Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold215
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 2124891
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
File 10 of 16
Found at i:1412033 original size:380 final size:380
Alignment explanation
Indices: 1411544--1412275 Score: 1018
Period size: 380 Copynumber: 1.9 Consensus size: 380
1411534 CTTCAGTCTC
*
1411544 TTTTCAAAGCCCACACAAGTTGGTAGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTTTCCTT
1 TTTTCAAAGCCCACACAAGTTGGTAGCACCCTTTAGTCCTCAAAGAGCAGGATCCCTTTTTCCTT
* * * * *
1411609 TCAAAGCCCACACGAGTTGGTGGCACCTTTTAGTTCTGAAAGAGCAGGATGCCTTTTTCCTTTCA
66 TCAAAACCCACACGAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAAGATGCCTTTTTCCTTTCA
* * *
1411674 AAGCCCACACAAGTTTGCGGCACCCTTTAGTCTCCTTTCAAAGCCCACACAAGTTGGTGGCACCC
131 AAGCCCACACAAGTTGGCGGCACCCTTCAGTCTCCTTTCAAAGCCCACACAAGTTGGTAGCACCC
* ** *
1411739 ATTAGTCCTCAAAAAGCAGGATGCTTTTTTCCTTTCAAAGCCCACACGAGTTGGTGACACCTTTT
196 ATTAGTCCTCAAAAAGCAGGATGCCTTTTTCCTTTCAAAGCCCACACGAGTTCATGACACCATTT
* * * * * *
1411804 AGTCCTCAAAAAGCAGGGTGCCTTTTTCGTTTC-AAACCTACTCGGGTTGGTGGCCTCATTTTAT
261 AGTCCTCAAAAAGCAAGATGCCTTTTTCATTTCAAAACCCACACGAGTTGGTGGCC-CATTTTAT
* *
1411868 CCTCAAAGAGTAGGACTCCTTTTTCTTTAGTCCTCAAAGAGCACGACCCTTTTTTT
325 CCTCAAAGAGCAGGACACCTTTTTCTTTAGTCCTCAAAGAGCACGACCCTTTTTTT
* ** * * * * * *
1411924 TTTTCAAAGCCTACACGGGTTTGTGGCACCTTTTAGTTCTGAAAGAGCATGA-CCCATTTTTCCT
1 TTTTCAAAGCCCACACAAGTTGGTAGCACCCTTTAGTCCTCAAAGAGCAGGATCCC-TTTTTCCT
* * * *
1411988 TTTAAAACCCACACGAGTTTGTGGCACCCTTTAGTCCTCAAAGAGCAAGATTCCTTTTTCTTTTC
65 TTCAAAACCCACACGAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAAGATGCCTTTTTCCTTTC
* * * *
1412053 AATGCCCACACGAGTTGGTGGCACCCTTCAGTCTCTTTTCAAAGCCCACACAAGTTGGTAGCACC
130 AAAGCCCACACAAGTTGGCGGCACCCTTCAGTCTCCTTTCAAAGCCCACACAAGTTGGTAGCACC
* * * *
1412118 CTTTAGTCCTCAAAGAGCAGGATGCCTTTTTCCTTTCTAAGCCCACACGAGTTCATGGCACCATT
195 CATTAGTCCTCAAAAAGCAGGATGCCTTTTTCCTTTCAAAGCCCACACGAGTTCATGACACCATT
* * * *
1412183 TAGTCCTTAAAAAGCAAGATTCCTTTTTCATTTCAAAACCCACACGAGTTGGTGGTCCATTTTGT
260 TAGTCCTCAAAAAGCAAGATGCCTTTTTCATTTCAAAACCCACACGAGTTGGTGGCCCATTTTAT
1412248 CCTCAAAGAGCAGGACACCTTTTTCTTT
325 CCTCAAAGAGCAGGACACCTTTTTCTTT
1412276 TCAAAGCCCA
Statistics
Matches: 304, Mismatches: 46, Indels: 4
0.86 0.13 0.01
Matches are distributed among these distances:
379 2 0.01
380 284 0.93
381 18 0.06
ACGTcount: A:0.24, C:0.27, G:0.18, T:0.31
Consensus pattern (380 bp):
TTTTCAAAGCCCACACAAGTTGGTAGCACCCTTTAGTCCTCAAAGAGCAGGATCCCTTTTTCCTT
TCAAAACCCACACGAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAAGATGCCTTTTTCCTTTCA
AAGCCCACACAAGTTGGCGGCACCCTTCAGTCTCCTTTCAAAGCCCACACAAGTTGGTAGCACCC
ATTAGTCCTCAAAAAGCAGGATGCCTTTTTCCTTTCAAAGCCCACACGAGTTCATGACACCATTT
AGTCCTCAAAAAGCAAGATGCCTTTTTCATTTCAAAACCCACACGAGTTGGTGGCCCATTTTATC
CTCAAAGAGCAGGACACCTTTTTCTTTAGTCCTCAAAGAGCACGACCCTTTTTTT
Found at i:1412101 original size:40 final size:40
Alignment explanation
Indices: 1412046--1412125 Score: 124
Period size: 40 Copynumber: 2.0 Consensus size: 40
1412036 GATTCCTTTT
* * *
1412046 TCTTTTCAATGCCCACACGAGTTGGTGGCACCCTTCAGTC
1 TCTTTTCAAAGCCCACACAAGTTGGTAGCACCCTTCAGTC
*
1412086 TCTTTTCAAAGCCCACACAAGTTGGTAGCACCCTTTAGTC
1 TCTTTTCAAAGCCCACACAAGTTGGTAGCACCCTTCAGTC
1412126 CTCAAAGAGC
Statistics
Matches: 36, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
40 36 1.00
ACGTcount: A:0.21, C:0.31, G:0.17, T:0.30
Consensus pattern (40 bp):
TCTTTTCAAAGCCCACACAAGTTGGTAGCACCCTTCAGTC
Found at i:1412152 original size:164 final size:164
Alignment explanation
Indices: 1411924--1412237 Score: 425
Period size: 164 Copynumber: 1.9 Consensus size: 164
1411914 CCCTTTTTTT
* ** * * * * * *
1411924 TTTTCAAAGCCTACACGGGTTTGTGGCACCTTTTAGTTCTGAAAGAGCATGACCCATTTTTCCTT
1 TTTTCAAAGCCCACACAAGTTGGTAGCACCCTTTAGTCCTCAAAGAGCAGGACCCATTTTTCCTT
** * * *
1411989 T-TAAAACCCACACGAGTTTGTGGCACCCTTTAGTCCTCAAAGAGCAAGATTCCTTTTTCTTTTC
66 TCT-AAACCCACACGAGTTCATGGCACCATTTAGTCCTCAAAAAGCAAGATTCCTTTTTCATTTC
**
1412053 AATGCCCACACGAGTTGGTGGCACCCTTCAGTCTC
130 AAAACCCACACGAGTTGGTGGCACCCTTCAGTCTC
*
1412088 TTTTCAAAGCCCACACAAGTTGGTAGCACCCTTTAGTCCTCAAAGAGCAGGATGCC-TTTTTCCT
1 TTTTCAAAGCCCACACAAGTTGGTAGCACCCTTTAGTCCTCAAAGAGCAGGA-CCCATTTTTCCT
* *
1412152 TTCTAAGCCCACACGAGTTCATGGCACCATTTAGTCCTTAAAAAGCAAGATTCCTTTTTCATTTC
65 TTCTAAACCCACACGAGTTCATGGCACCATTTAGTCCTCAAAAAGCAAGATTCCTTTTTCATTTC
1412217 AAAACCCACACGAGTTGGTGG
130 AAAACCCACACGAGTTGGTGG
1412238 TCCATTTTGT
Statistics
Matches: 129, Mismatches: 19, Indels: 4
0.85 0.12 0.03
Matches are distributed among these distances:
164 126 0.98
165 3 0.02
ACGTcount: A:0.25, C:0.27, G:0.17, T:0.31
Consensus pattern (164 bp):
TTTTCAAAGCCCACACAAGTTGGTAGCACCCTTTAGTCCTCAAAGAGCAGGACCCATTTTTCCTT
TCTAAACCCACACGAGTTCATGGCACCATTTAGTCCTCAAAAAGCAAGATTCCTTTTTCATTTCA
AAACCCACACGAGTTGGTGGCACCCTTCAGTCTC
Found at i:1412177 original size:102 final size:101
Alignment explanation
Indices: 1411986--1412179 Score: 282
Period size: 102 Copynumber: 1.9 Consensus size: 101
1411976 CCCATTTTTC
* * * * *
1411986 CTTTTAAAACCCACACGAGTTTGTGGCACCCTTTAGTCCTCAAAGAGCAAGATTCCTTTTTCTTT
1 CTTTTAAAACCCACACAAGTTGGTAGCACCCTTTAGTCCTCAAAGAGCAAGATGCCTTTTTCCTT
**
1412051 TCAATGCCCACACGAGTTGGTGGCACCCTTCAGTCT
66 TCAATGCCCACACGAGTTCATGGCACCCTTCAGTCT
* *
1412087 CTTTTCAAAGCCCACACAAGTTGGTAGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTTTCCT
1 CTTTT-AAAACCCACACAAGTTGGTAGCACCCTTTAGTCCTCAAAGAGCAAGATGCCTTTTTCCT
1412152 TTCTAA-GCCCACACGAGTTCATGGCACC
65 TTC-AATGCCCACACGAGTTCATGGCACC
1412180 ATTTAGTCCT
Statistics
Matches: 82, Mismatches: 9, Indels: 3
0.87 0.10 0.03
Matches are distributed among these distances:
101 5 0.06
102 75 0.91
103 2 0.02
ACGTcount: A:0.24, C:0.30, G:0.17, T:0.29
Consensus pattern (101 bp):
CTTTTAAAACCCACACAAGTTGGTAGCACCCTTTAGTCCTCAAAGAGCAAGATGCCTTTTTCCTT
TCAATGCCCACACGAGTTCATGGCACCCTTCAGTCT
Found at i:1412208 original size:62 final size:62
Alignment explanation
Indices: 1412089--1412620 Score: 654
Period size: 62 Copynumber: 8.6 Consensus size: 62
1412079 TTCAGTCTCT
* *
1412089 TTTCAAAGCCCACACAAGTTGGTAGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTTTCC
1 TTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTTTCC
* ** * * * * * *
1412151 TTTCTAAGCCCACACGAGTTCATGGCACCATTTAGTCCTTAAAAAGCAAGATTCCTTTTTCA
1 TTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTTTCC
* * * * ** *
1412213 TTTCAAAACCCACACGAGTTGGTGG-TCCATTTTGTCCTCAAAGAGCAGGACACCTTTTTCT
1 TTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTTTCC
* * * * * **
1412274 TTTCAAAGCCCACACGTGTTGTTGGTACCCTTTAGTCCTCAAAGAGCAAGACGTATTTTTCC
1 TTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTTTCC
* * *
1412336 TTTCAAAGCCCATA-GAAGTTGGTGGCACCCTTTAGTCCTGAAAGAGCAGGATGCCTCTTTCC
1 TTTCAAAGCCCACACG-AGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTTTCC
* * *
1412398 TTTCAAAGCCCGCACGAGTTAGTGGCACCCTTTAGTCCTCAAAAAGCAGGATGCCTTTTTCC
1 TTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTTTCC
* * **
1412460 TTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGTTCTGAAAGAGCAGGATGCCTTTCCCC
1 TTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTTTCC
* * **
1412522 TTTCAAAGCCCACACAAGTTTGTGGCACCCTTTAGTCCTCAAAGAGCAACATGCCTTTTTCC
1 TTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTTTCC
** * *
1412584 TTTCAGCGCCCACACGTGTTGGTGGCACCCTTCAGTC
1 TTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGTC
1412621 TCCTTTCAAA
Statistics
Matches: 396, Mismatches: 71, Indels: 6
0.84 0.15 0.01
Matches are distributed among these distances:
61 51 0.13
62 344 0.87
63 1 0.00
ACGTcount: A:0.24, C:0.28, G:0.19, T:0.29
Consensus pattern (62 bp):
TTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTTTCC
Found at i:1412223 original size:226 final size:225
Alignment explanation
Indices: 1411892--1412310 Score: 536
Period size: 226 Copynumber: 1.9 Consensus size: 225
1411882 ACTCCTTTTT
** * * ** *
1411892 CTTTAGTCCTCAAAGAGCACGACCCTTTTTTTTTTTCAAAGCCTACACGGGTTTGTGGCACCTTT
1 CTTTAGTCCTCAAAGAGCACGACCCTTTTTTCCTTTCAAAGCCCACACGAGTTCATGGCACCATT
* * * * * * *
1411957 TAGTTCTGAAAGAGCATGACCCATTTTTCCTTTTAAAACCCACACGAGTTTGTGGCACCCTTTAG
66 TAGTCCTGAAAAAGCAAGACCCATTTTTCATTTCAAAACCCACACGAGTTGGTGG-ACCATTTAG
** *
1412022 TCCTCAAAGAGCAAGATTCCTTTTTCTTTTCAATGCCCACACGAGTTGGTGGCACCCTTCAGTCT
130 TCCTCAAAGAGCAAGACACCTTTTTCTTTTCAAAGCCCACACGAGTTGGTGGCACCCTTCAGTCT
1412087 CTTTTCAAAGCCCACACAAGTTGGTAGCACC
195 CTTTTCAAAGCCCACACAAGTTGGTAGCACC
* * *
1412118 CTTTAGTCCTCAAAGAGCAGGATGCC-TTTTTCCTTTCTAAGCCCACACGAGTTCATGGCACCAT
1 CTTTAGTCCTCAAAGAGCACGA-CCCTTTTTTCCTTTCAAAGCCCACACGAGTTCATGGCACCAT
* * * *
1412182 TTAGTCCTTAAAAAGCAAGATTCC-TTTTTCATTTCAAAACCCACACGAGTTGGTGGTCCATTTT
65 TTAGTCCTGAAAAAGCAAGA-CCCATTTTTCATTTCAAAACCCACACGAGTTGGTGGACCATTTA
* * * * *
1412246 GTCCTCAAAGAGCAGGACACCTTTTTCTTTTCAAAGCCCACACGTGTTGTTGGTACCCTTTAGTC
129 GTCCTCAAAGAGCAAGACACCTTTTTCTTTTCAAAGCCCACACGAGTTGGTGGCACCCTTCAGTC
1412311 CTCAAAGAGC
Statistics
Matches: 162, Mismatches: 29, Indels: 5
0.83 0.15 0.03
Matches are distributed among these distances:
225 62 0.38
226 96 0.59
227 4 0.02
ACGTcount: A:0.24, C:0.27, G:0.17, T:0.32
Consensus pattern (225 bp):
CTTTAGTCCTCAAAGAGCACGACCCTTTTTTCCTTTCAAAGCCCACACGAGTTCATGGCACCATT
TAGTCCTGAAAAAGCAAGACCCATTTTTCATTTCAAAACCCACACGAGTTGGTGGACCATTTAGT
CCTCAAAGAGCAAGACACCTTTTTCTTTTCAAAGCCCACACGAGTTGGTGGCACCCTTCAGTCTC
TTTTCAAAGCCCACACAAGTTGGTAGCACC
Found at i:1412636 original size:40 final size:40
Alignment explanation
Indices: 1412581--1412660 Score: 115
Period size: 40 Copynumber: 2.0 Consensus size: 40
1412571 CATGCCTTTT
** **
1412581 TCCTTTCAGCGCCCACACGTGTTGGTGGCACCCTTCAGTC
1 TCCTTTCAAAGCCCACACAAGTTGGTGGCACCCTTCAGTC
*
1412621 TCCTTTCAAAGCCCACACAAGTTGGTGGCACCCTTTAGTC
1 TCCTTTCAAAGCCCACACAAGTTGGTGGCACCCTTCAGTC
1412661 CTCAAAGAGC
Statistics
Matches: 35, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
40 35 1.00
ACGTcount: A:0.17, C:0.35, G:0.20, T:0.28
Consensus pattern (40 bp):
TCCTTTCAAAGCCCACACAAGTTGGTGGCACCCTTCAGTC
Found at i:1412654 original size:164 final size:164
Alignment explanation
Indices: 1412457--1412752 Score: 448
Period size: 164 Copynumber: 1.8 Consensus size: 164
1412447 GATGCCTTTT
* * *
1412457 TCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGTTCTGAAAGAGCAGGATGCCTTTCCCC
1 TCCTTTCAAAGCCCACACAAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTCCCC
* * * *
1412522 TTTCAAAGCCCACACAAGTTTGTGGCACCCTTTAGTCCTCAAAGAGCAACATGCCTTTTTCCTTT
66 TTTCAAAGCCAACACAAGTTAGTGACACCCTTTAGTCCTCAAAAAGCAACATGCCTTTTTCCTTT
1412587 CAGCGCCCACACGTGTTGGTGGCACCCTTCAGTC
131 CAGCGCCCACACGTGTTGGTGGCACCCTTCAGTC
**
1412621 TCCTTTCAAAGCCCACACAAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTTTCC
1 TCCTTTCAAAGCCCACACAAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTCCCC
* * * *** *
1412686 TTTCAAAGCCAACACGAGTTAGTGACATCTTTTAGTCCTCAAAAAGCAGGTTGCCTTTTTCGTTT
66 TTTCAAAGCCAACACAAGTTAGTGACACCCTTTAGTCCTCAAAAAGCAACATGCCTTTTTCCTTT
1412751 CA
131 CA
1412753 AACCTACATG
Statistics
Matches: 116, Mismatches: 16, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
164 116 1.00
ACGTcount: A:0.23, C:0.29, G:0.19, T:0.29
Consensus pattern (164 bp):
TCCTTTCAAAGCCCACACAAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTCCCC
TTTCAAAGCCAACACAAGTTAGTGACACCCTTTAGTCCTCAAAAAGCAACATGCCTTTTTCCTTT
CAGCGCCCACACGTGTTGGTGGCACCCTTCAGTC
Found at i:1412722 original size:62 final size:62
Alignment explanation
Indices: 1412621--1413022 Score: 434
Period size: 62 Copynumber: 6.5 Consensus size: 62
1412611 CCCTTCAGTC
* *
1412621 TCCTTTCAAAGCCCACACAAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTT
1 TCCTTTCAAAGCCTACACGAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTT
* * * * * * *
1412683 TCCTTTCAAAGCCAACACGAGTTAGTGACATCTTTTAGTCCTCAAAAAGCAGGTTGCCTTTT
1 TCCTTTCAAAGCCTACACGAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTT
* * * * ** *
1412745 TCGTTTCAAA-CCTACATGGGTTGGTGGC-CTCATTTTTTCCTCAAAGAGTAGGACT-CCTTTT
1 TCCTTTCAAAGCCTACACGAGTTGGTGGCAC-CCTTTAGTCCTCAAAGAGCAGGA-TGCCTTTT
* ** * ** **
1412806 TCTTTTCAAAGCCTACACTTGTTGGCGGCACCCTTTAGTCCTCACTGAGCAGGACCCCTTTT
1 TCCTTTCAAAGCCTACACGAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTT
* * * *
1412868 TCTTTTCAAAGCCTACACGAGTTTGTGGCACCCTTTAGTTCTGAAAGAGCAGGATGCCTTTT
1 TCCTTTCAAAGCCTACACGAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTT
* * * * * *
1412930 TCCTTTCAAAGCCCACACAAGTTTGTGGCACCCTTTAGTCTTCAAAGAGCAAGATGCCCTTT
1 TCCTTTCAAAGCCTACACGAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTT
*
1412992 TCCTTTCAATGTCC-ACACGAGTTGGTGGCAC
1 TCCTTTCAAAG-CCTACACGAGTTGGTGGCAC
1413023 TATTCAGTCT
Statistics
Matches: 280, Mismatches: 54, Indels: 12
0.81 0.16 0.03
Matches are distributed among these distances:
61 45 0.16
62 232 0.83
63 3 0.01
ACGTcount: A:0.23, C:0.27, G:0.19, T:0.32
Consensus pattern (62 bp):
TCCTTTCAAAGCCTACACGAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTT
Found at i:1413110 original size:102 final size:102
Alignment explanation
Indices: 1412932--1413116 Score: 307
Period size: 102 Copynumber: 1.8 Consensus size: 102
1412922 TGCCTTTTTC
* * *
1412932 CTTTCAAAGCCCACACAAGTTTGTGGCACCCTTTAGTCTTCAAAGAGCAAGATGCCCTTTTCCTT
1 CTTTCAAAGCCCACACAAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAAGATGCCCTTTTCATT
* *
1412997 TCAATGTCCACACGAGTTGGTGGCACTATTCAGTCTT
66 TCAAAGCCCACACGAGTTGGTGGCACTATTCAGTCTT
* *
1413034 CTTTCAAAGCCCACACAAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTTTCATT
1 CTTTCAAAGCCCACACAAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAAGATGCCCTTTTCATT
1413099 TCAAAGCCCACACGAGTT
66 TCAAAGCCCACACGAGTT
1413117 CATGGCACCC
Statistics
Matches: 76, Mismatches: 7, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
102 76 1.00
ACGTcount: A:0.25, C:0.28, G:0.18, T:0.29
Consensus pattern (102 bp):
CTTTCAAAGCCCACACAAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAAGATGCCCTTTTCATT
TCAAAGCCCACACGAGTTGGTGGCACTATTCAGTCTT
Found at i:1413132 original size:62 final size:62
Alignment explanation
Indices: 1413034--1413465 Score: 460
Period size: 62 Copynumber: 7.0 Consensus size: 62
1413024 ATTCAGTCTT
* *
1413034 CTTTCAAAGCCCACACAAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTTTC
1 CTTTCAAAGCCCACACGAGTTGATGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTTTC
* * * *
1413096 ATTTCAAAGCCCACACGAGTTCATGGCACCCTTTAGTCCTTAAAAAGCAGGATGCCTTTTTC
1 CTTTCAAAGCCCACACGAGTTGATGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTTTC
* * * * * * * * * * ***
1413158 GTTTAAAAACCCGCATGGGTTGGTGG-TCCATTTTGTCCTCAAAGAGCAGGGCACCTTTTTC
1 CTTTCAAAGCCCACACGAGTTGATGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTTTC
* * * ** *
1413219 TTTTCAAAGCCCACAC-ATGTTGTTGGCACCCTTTAGTCCTCAAAGAGCAAGATGTATTTCTC
1 CTTTCAAAGCCCACACGA-GTTGATGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTTTC
* *
1413281 TTTTCAAAGCCCACA-GAAGTTGATGGCACCCTTTAGTCCCCAAAGAGCAGGATGCCTTTTTC
1 CTTTCAAAGCCCACACG-AGTTGATGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTTTC
* * ** * * * *
1413343 CCTTCAAAGCCCGCACGAGTTTG-TGAAACCCTTCAGCCCTCAAAAATCAGGATGCCTTTTTC
1 CTTTCAAAGCCCACACGAG-TTGATGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTTTC
* *
1413405 CTTTCAAAGCCCACACTAGTT-AGTGGCACCCTTTAGTCCTCAAAGAGTAGGATGCCTTTTT
1 CTTTCAAAGCCCACACGAGTTGA-TGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTTT
1413466 GAGTGGTACC
Statistics
Matches: 297, Mismatches: 65, Indels: 16
0.79 0.17 0.04
Matches are distributed among these distances:
61 47 0.16
62 245 0.82
63 5 0.02
ACGTcount: A:0.25, C:0.27, G:0.19, T:0.29
Consensus pattern (62 bp):
CTTTCAAAGCCCACACGAGTTGATGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTTTC
Found at i:1413182 original size:164 final size:164
Alignment explanation
Indices: 1412871--1413183 Score: 430
Period size: 164 Copynumber: 1.9 Consensus size: 164
1412861 CCCTTTTTCT
* * * * * *
1412871 TTTCAAAGCCTACACGAGTTTGTGGCACCCTTTAGTTCTGAAAGAGCAGGATGCCTTTTTCCTTT
1 TTTCAAAGCCCACACAAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTTTCATTT
** * *
1412936 CAAAGCCCACACAAGTTTGTGGCACCCTTTAGTCTTCAAAGAGCAAGATGCCCTTTTCCTTTCAA
66 CAAAGCCCACACAAGTTCATGGCACCCTTTAGTCTTCAAAAAGCAAGATGCCCTTTTCCTTTAAA
***
1413001 TGTCCACACGAGTTGGTGGCACTATTCAGTCTTC
131 AACCCACACGAGTTGGTGGCACTATTCAGTCTTC
1413035 TTTCAAAGCCCACACAAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTTTCATTT
1 TTTCAAAGCCCACACAAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTTTCATTT
* * * *
1413100 CAAAGCCCACACGAGTTCATGGCACCCTTTAGTCCTT-AAAAAGCAGGATGCCTTTTTCGTTTAA
66 CAAAGCCCACACAAGTTCATGGCACCCTTTAGT-CTTCAAAAAGCAAGATGCCCTTTTCCTTTAA
* * *
1413164 AAACCCGCATGGGTTGGTGG
130 AAACCCACACGAGTTGGTGG
1413184 TCCATTTTGT
Statistics
Matches: 128, Mismatches: 20, Indels: 2
0.85 0.13 0.01
Matches are distributed among these distances:
164 125 0.98
165 3 0.02
ACGTcount: A:0.24, C:0.26, G:0.20, T:0.30
Consensus pattern (164 bp):
TTTCAAAGCCCACACAAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTTTCATTT
CAAAGCCCACACAAGTTCATGGCACCCTTTAGTCTTCAAAAAGCAAGATGCCCTTTTCCTTTAAA
AACCCACACGAGTTGGTGGCACTATTCAGTCTTC
Found at i:1413471 original size:41 final size:41
Alignment explanation
Indices: 1413426--1413506 Score: 117
Period size: 41 Copynumber: 2.0 Consensus size: 41
1413416 CACACTAGTT
* * *
1413426 AGTGGCACCCTTTAGTCCTCAAAGAGTAGGATGCCTTTTTG
1 AGTGGCACCCTTTAGTCCTCAAAGAGCAAGACGCCTTTTTG
* *
1413467 AGTGGTACCCTTTAGTCCTGAAAGAGCAAGACGCCTTTTT
1 AGTGGCACCCTTTAGTCCTCAAAGAGCAAGACGCCTTTTT
1413507 CCTTTCAAAG
Statistics
Matches: 35, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
41 35 1.00
ACGTcount: A:0.23, C:0.22, G:0.23, T:0.31
Consensus pattern (41 bp):
AGTGGCACCCTTTAGTCCTCAAAGAGCAAGACGCCTTTTTG
Found at i:1413600 original size:164 final size:164
Alignment explanation
Indices: 1413300--1413615 Score: 411
Period size: 164 Copynumber: 1.9 Consensus size: 164
1413290 CCCACAGAAG
* * * **
1413300 TTGATGGCACCCTTTAGTCCCCAAAGAGCAGGATGCCTTTTTCCCTTCAAAGCCCGCACGAGTTT
1 TTGATGGCACCCTTTAGTCCCCAAAGAGCAAGACGCCTTTTTCCCTTCAAAGCCCACACGAGTCG
** * *
1413365 GTGAAACCCTTCAGCCCTCAAAAATCAGGATGCCTTTTTCCTTTCAAAGCCCACACTAGTTAGTG
66 GTGAAACCCTTCAGCCCTCAAAAATCAGGACACCTTTTTCCATTCAAAGCCCACACGAGTTAGTG
1413430 GCACCCTTTAGTCCTCAAAGAGTAGGATGCCTTT
131 GCACCCTTTAGTCCTCAAAGAGTAGGATGCCTTT
* ** *
1413464 TTGAGTGGTACCCTTTAGTCCTGAAAGAGCAAGACGCCTTTTTCCTTTCAAAGCCCACAC-AGTC
1 TTGA-TGGCACCCTTTAGTCCCCAAAGAGCAAGACGCCTTTTTCCCTTCAAAGCCCACACGAGTC
** * * * * * *
1413528 GGTGGCACCCTTCAGTCCTTAAGGAGT-AGGACACTTTTTTCCATTCAAAGCCCACACGAGTTGG
65 GGTGAAACCCTTCAGCCCTCAA-AAATCAGGACACCTTTTTCCATTCAAAGCCCACACGAGTTAG
1413592 TGGCACCCTTTAGTCCTCAAAGAG
129 TGGCACCCTTTAGTCCTCAAAGAG
1413616 CAAGACGTCT
Statistics
Matches: 129, Mismatches: 21, Indels: 4
0.84 0.14 0.03
Matches are distributed among these distances:
164 79 0.61
165 50 0.39
ACGTcount: A:0.24, C:0.28, G:0.20, T:0.28
Consensus pattern (164 bp):
TTGATGGCACCCTTTAGTCCCCAAAGAGCAAGACGCCTTTTTCCCTTCAAAGCCCACACGAGTCG
GTGAAACCCTTCAGCCCTCAAAAATCAGGACACCTTTTTCCATTCAAAGCCCACACGAGTTAGTG
GCACCCTTTAGTCCTCAAAGAGTAGGATGCCTTT
Found at i:1413637 original size:62 final size:62
Alignment explanation
Indices: 1413468--1413787 Score: 412
Period size: 62 Copynumber: 5.2 Consensus size: 62
1413458 GCCTTTTTGA
* * *
1413468 GTGGTACCCTTTAGTCCTGAAAGAGCAAGACGCCTTTTTCCTTTCAAAGCCCACAC-AGTCG
1 GTGGCACCCTTTAGTCCTCAAAGAGCAAGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTG
* * * * * * * *
1413529 GTGGCACCCTTCAGTCCTTAAGGAGTAGGACACTTTTTTCCATTCAAAGCCCACACGAGTTG
1 GTGGCACCCTTTAGTCCTCAAAGAGCAAGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTG
* *
1413591 GTGGCACCCTTTAGTCCTCAAAGAGCAAGACGTC-TTTTCCTTTTCAAAGCCCACACAAGTTG
1 GTGGCACCCTTTAGTCCTCAAAGAGCAAGACGCCTTTTTCC-TTTCAAAGCCCACACGAGTTG
*
1413653 GTGGCACCCTTTAGTCCTCAAAGAGC-AGAACGCCTTTTTCCTTTCAAAGCCCACACGAGTTT
1 GTGGCACCCTTTAGTCCTCAAAGAGCAAG-ACGCCTTTTTCCTTTCAAAGCCCACACGAGTTG
* * * * * * *
1413715 ATGGCACCCTTTAGTCCTTAAAGAGCAGGATGCCATTTTCCTTTCAATGCCCATACGAGTTG
1 GTGGCACCCTTTAGTCCTCAAAGAGCAAGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTG
1413777 GTGGCACCCTT
1 GTGGCACCCTT
1413788 CGGTCTCCTT
Statistics
Matches: 222, Mismatches: 32, Indels: 9
0.84 0.12 0.03
Matches are distributed among these distances:
61 55 0.25
62 160 0.72
63 7 0.03
ACGTcount: A:0.24, C:0.29, G:0.19, T:0.28
Consensus pattern (62 bp):
GTGGCACCCTTTAGTCCTCAAAGAGCAAGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTG
Found at i:1413641 original size:226 final size:227
Alignment explanation
Indices: 1413246--1413691 Score: 563
Period size: 226 Copynumber: 2.0 Consensus size: 227
1413236 TGTTGTTGGC
* * * *
1413246 ACCCTTTAGTCCTCAAAGAGCAAGATGTATTTCTCTTTTCAAAGCCCACAGAAGTTGATGGCACC
1 ACCCTTTAGTCCTCAAAGAGCAAGACGCATTTCTCCTTTCAAAGCCCACAGAAGTCGATGGCACC
* ** * * *
1413311 CTTTAGTCCCCAAAGAGCAGGATGCCTTTTTCCCTTCAAAGCCCGCACGAGTTTGTGAAACCCTT
66 CTTCAGTCCCCAAAGAGCAGGACACCTTTTTCCATTCAAAGCCCACACGAGTTGGTGAAACCCTT
* * * *
1413376 CAGCCCTCAAAAATCAGGATGCCTTTTTCCTTTCAAAGCCCACACTAGTTAGTGGCACCCTTTAG
131 CAGCCCTCAAAAAGCAAGACGCCTTTTTCCTTTCAAAGCCCACACAAGTTAGTGGCACCCTTTAG
* * *
1413441 TCCTCAAAGAGTAGGATGCCTTTTTGAGTGGT
196 TCCTCAAAGAGCAGAACGCCTTTTTGAGTGGT
* * * * *
1413473 ACCCTTTAGTCCTGAAAGAGCAAGACGCCTTTTTCCTTTCAAAGCCCACA-CAGTCGGTGGCACC
1 ACCCTTTAGTCCTCAAAGAGCAAGACGCATTTCTCCTTTCAAAGCCCACAGAAGTCGATGGCACC
** * * * **
1413537 CTTCAGTCCTTAAGGAGTAGGACACTTTTTTCCATTCAAAGCCCACACGAGTTGGTGGCACCCTT
66 CTTCAGTCCCCAAAGAGCAGGACACCTTTTTCCATTCAAAGCCCACACGAGTTGGTGAAACCCTT
* * * * *
1413602 TAGTCCTCAAAGAGCAAGACGTC-TTTTCCTTTTCAAAGCCCACACAAGTTGGTGGCACCCTTTA
131 CAGCCCTCAAAAAGCAAGACGCCTTTTTCC-TTTCAAAGCCCACACAAGTTAGTGGCACCCTTTA
1413666 GTCCTCAAAGAGCAGAACGCCTTTTT
195 GTCCTCAAAGAGCAGAACGCCTTTTT
1413692 CCTTTCAAAG
Statistics
Matches: 184, Mismatches: 34, Indels: 3
0.83 0.15 0.01
Matches are distributed among these distances:
225 6 0.03
226 134 0.73
227 44 0.24
ACGTcount: A:0.25, C:0.28, G:0.19, T:0.28
Consensus pattern (227 bp):
ACCCTTTAGTCCTCAAAGAGCAAGACGCATTTCTCCTTTCAAAGCCCACAGAAGTCGATGGCACC
CTTCAGTCCCCAAAGAGCAGGACACCTTTTTCCATTCAAAGCCCACACGAGTTGGTGAAACCCTT
CAGCCCTCAAAAAGCAAGACGCCTTTTTCCTTTCAAAGCCCACACAAGTTAGTGGCACCCTTTAG
TCCTCAAAGAGCAGAACGCCTTTTTGAGTGGT
Found at i:1413816 original size:40 final size:40
Alignment explanation
Indices: 1413753--1413828 Score: 125
Period size: 40 Copynumber: 1.9 Consensus size: 40
1413743 GATGCCATTT
* *
1413753 TCCTTTCAATGCCCATACGAGTTGGTGGCACCCTTCGGTC
1 TCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTCGGTC
*
1413793 TCCTTTCAAAGCCCACACTAGTTGGTGGCACCCTTC
1 TCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTC
1413829 TGTCCCCAAA
Statistics
Matches: 33, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
40 33 1.00
ACGTcount: A:0.17, C:0.34, G:0.20, T:0.29
Consensus pattern (40 bp):
TCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTCGGTC
Found at i:1413869 original size:102 final size:102
Alignment explanation
Indices: 1413691--1413886 Score: 295
Period size: 102 Copynumber: 1.9 Consensus size: 102
1413681 AACGCCTTTT
* **
1413691 TCCTTTCAAAGCCCACACGAGTTTATGGCACCCTTTAGTCCTTAAAGAGCAGGATGCCATTTTCC
1 TCCTTTCAAAGCCCACACGAGTTGATGGCACCCTTTAGTCCCCAAAGAGCAGGATGCCATTTTCC
* * *
1413756 TTTCAATGCCCATACGAGTTGGTGGCACCCTTCGGTC
66 TTTAAAAGCCCACACGAGTTGGTGGCACCCTTCGGTC
* * *
1413793 TCCTTTCAAAGCCCACACTAGTTGGTGGCACCCTTCT-GTCCCCAAAGAGCAGGATGCCTTTTTC
1 TCCTTTCAAAGCCCACACGAGTTGATGGCACCCTT-TAGTCCCCAAAGAGCAGGATGCCATTTTC
1413857 CTTTAAAAGCCCACACGAGTTGGTGGCACC
65 CTTTAAAAGCCCACACGAGTTGGTGGCACC
1413887 TTTTAGTCCT
Statistics
Matches: 84, Mismatches: 9, Indels: 2
0.88 0.09 0.02
Matches are distributed among these distances:
102 83 0.99
103 1 0.01
ACGTcount: A:0.22, C:0.31, G:0.20, T:0.28
Consensus pattern (102 bp):
TCCTTTCAAAGCCCACACGAGTTGATGGCACCCTTTAGTCCCCAAAGAGCAGGATGCCATTTTCC
TTTAAAAGCCCACACGAGTTGGTGGCACCCTTCGGTC
Found at i:1413905 original size:164 final size:163
Alignment explanation
Indices: 1413632--1413950 Score: 487
Period size: 164 Copynumber: 2.0 Consensus size: 163
1413622 GTCTTTTCCT
*
1413632 TTTCAAAGCCCACACAAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGAACGCCTTTTTCCTTT
1 TTTCAAAGCCCACACAAGTTGGTGGCACCCTTTAGTCCCCAAAGAGCAGAACGCCTTTTTCCTTT
* * *
1413697 CAAAGCCCACACGAGTTTATGGCACCCTTTAGTCCTTAAAGAGCAGGATGCCATTTTCCTTTCAA
66 AAAAGCCCACACGAGTTGATGGCACCCTTTAGTCCTTAAAGAGCAAGATGCCATTTTCCTTTCAA
* * *
1413762 TGCCCATACGAGTTGGTGGCACCCTTCGGTCTCC
131 AGCCCACAC-AATTGGTGGCACCCTTCGGTCTCC
* * *
1413796 TTTCAAAGCCCACACTAGTTGGTGGCACCCTTCT-GTCCCCAAAGAGCAGGATGCCTTTTTCCTT
1 TTTCAAAGCCCACACAAGTTGGTGGCACCCTT-TAGTCCCCAAAGAGCAGAACGCCTTTTTCCTT
* * * *
1413860 TAAAAGCCCACACGAGTTGGTGGCACCTTTTAGTCCTTGAAGAGCAAGATGCCTTTTTCCTTTCA
65 TAAAAGCCCACACGAGTTGATGGCACCCTTTAGTCCTTAAAGAGCAAGATGCCATTTTCCTTTCA
1413925 AAGCCCACACAATTGGTGGCACCCTT
130 AAGCCCACACAATTGGTGGCACCCTT
1413951 TAGTCCTCAA
Statistics
Matches: 140, Mismatches: 14, Indels: 3
0.89 0.09 0.02
Matches are distributed among these distances:
163 15 0.11
164 124 0.89
165 1 0.01
ACGTcount: A:0.23, C:0.29, G:0.19, T:0.28
Consensus pattern (163 bp):
TTTCAAAGCCCACACAAGTTGGTGGCACCCTTTAGTCCCCAAAGAGCAGAACGCCTTTTTCCTTT
AAAAGCCCACACGAGTTGATGGCACCCTTTAGTCCTTAAAGAGCAAGATGCCATTTTCCTTTCAA
AGCCCACACAATTGGTGGCACCCTTCGGTCTCC
Found at i:1413962 original size:123 final size:124
Alignment explanation
Indices: 1413793--1414070 Score: 382
Period size: 123 Copynumber: 2.3 Consensus size: 124
1413783 CCCTTCGGTC
*
1413793 TCCTTTCAAAGCCCACACTAGTTGGTGGCACCCTTCTGTCCCCAAAGAGCAGGATGCCTTTTTCC
1 TCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTCTGTCCCCAAAGAGCAGGATGCCTTTTTCC
* * **
1413858 TTTAAAAGCCCACACGAGTTGGTGGCACCTTTTAGTCCTTGAAGAGCAAGATGCCTTTT
66 TTTAAAAGCCCACACGACTTGGTGGCACCCTTTAGTCCTCAAAGAGCAAGATGCCTTTT
* * *
1413917 TCCTTTCAAAGCCCACAC-AATTGGTGGCACCCTT-TAGTCCTCAAAGAGCTGGATGCCTTTTTC
1 TCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTCT-GTCCCCAAAGAGCAGGATGCCTTTTTC
* * * * *
1413980 TTTTCAAAGCCCACACGACTTTGTGGGACCCTTTAGTCCTCAAAGAGGAAGATGCCTTTT
65 CTTTAAAAGCCCACACGACTTGGTGGCACCCTTTAGTCCTCAAAGAGCAAGATGCCTTTT
* * *
1414040 T-CATTCAACGCCCACACGAGTTGGGGGCACC
1 TCCTTTCAAAGCCCACACGAGTTGGTGGCACC
1414071 ATTCAGTCTC
Statistics
Matches: 136, Mismatches: 16, Indels: 5
0.87 0.10 0.03
Matches are distributed among these distances:
122 15 0.11
123 103 0.76
124 18 0.13
ACGTcount: A:0.23, C:0.29, G:0.20, T:0.28
Consensus pattern (124 bp):
TCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTCTGTCCCCAAAGAGCAGGATGCCTTTTTCC
TTTAAAAGCCCACACGACTTGGTGGCACCCTTTAGTCCTCAAAGAGCAAGATGCCTTTT
Found at i:1413972 original size:61 final size:62
Alignment explanation
Indices: 1413793--1414070 Score: 364
Period size: 62 Copynumber: 4.5 Consensus size: 62
1413783 CCCTTCGGTC
* * *
1413793 TCCTTTCAAAGCCCACACTAGTTGGTGGCACCCTTCT-GTCCCCAAAGAGCAGGATGCCTTTT
1 TCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTT-TAGTCCTCAAAGAGCAAGATGCCTTTT
* * **
1413855 TCCTTTAAAAGCCCACACGAGTTGGTGGCACCTTTTAGTCCTTGAAGAGCAAGATGCCTTTT
1 TCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAAGATGCCTTTT
* **
1413917 TCCTTTCAAAGCCCACAC-AATTGGTGGCACCCTTTAGTCCTCAAAGAGCTGGATGCCTTTT
1 TCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAAGATGCCTTTT
* * * * *
1413978 TCTTTTCAAAGCCCACACGACTTTGTGGGACCCTTTAGTCCTCAAAGAGGAAGATGCCTTTT
1 TCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAAGATGCCTTTT
* * *
1414040 T-CATTCAACGCCCACACGAGTTGGGGGCACC
1 TCCTTTCAAAGCCCACACGAGTTGGTGGCACC
1414071 ATTCAGTCTC
Statistics
Matches: 186, Mismatches: 28, Indels: 5
0.85 0.13 0.02
Matches are distributed among these distances:
61 78 0.42
62 108 0.58
ACGTcount: A:0.23, C:0.29, G:0.20, T:0.28
Consensus pattern (62 bp):
TCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAAGATGCCTTTT
Found at i:1414102 original size:40 final size:40
Alignment explanation
Indices: 1414043--1414118 Score: 109
Period size: 40 Copynumber: 1.9 Consensus size: 40
1414033 GCCTTTTTCA
* *
1414043 TTCAACGCCCACACGAGTTGGGGGCA-CCATTCAGTCTCCT
1 TTCAAAGCCCACACAAGTTGGGGGCAGCCATT-AGTCTCCT
*
1414083 TTCAAAGCCCACACAAGTTGGTGGCAGCCATTAGTC
1 TTCAAAGCCCACACAAGTTGGGGGCAGCCATTAGTC
1414119 CTCAAAGAGC
Statistics
Matches: 32, Mismatches: 3, Indels: 2
0.86 0.08 0.05
Matches are distributed among these distances:
40 27 0.84
41 5 0.16
ACGTcount: A:0.24, C:0.32, G:0.22, T:0.22
Consensus pattern (40 bp):
TTCAAAGCCCACACAAGTTGGGGGCAGCCATTAGTCTCCT
Found at i:1414179 original size:62 final size:62
Alignment explanation
Indices: 1414079--1414264 Score: 209
Period size: 62 Copynumber: 3.0 Consensus size: 62
1414069 CCATTCAGTC
*
1414079 TCCTTTCAAAGCCCACACAAGTTGGTGGCAGCC-ATTAGTCCTCAAAGAGCAGGATGCTTTTT
1 TCCTTTCAAAGCCCACACAAGTTGGTGGCA-CCTTTTAGTCCTCAAAGAGCAGGATGCTTTTT
* * * *
1414141 TCCTTTCAAAGCCCACACAAGTTGGTGACACCTTTTAGTCCTCAAAAAGCAGGGTGCCTTTT
1 TCCTTTCAAAGCCCACACAAGTTGGTGGCACCTTTTAGTCCTCAAAGAGCAGGATGCTTTTT
* * ** * *
1414203 TCGTTTCAAA-CCTACACGGGTTGGTGGC-CTCATTTT-GTCCTCAAAGAGTAGGACTCCTTTTT
1 TCCTTTCAAAGCCCACACAAGTTGGTGGCAC-C-TTTTAGTCCTCAAAGAGCAGGA-TGCTTTTT
1414265 CTTTTGTCCT
Statistics
Matches: 105, Mismatches: 15, Indels: 8
0.82 0.12 0.06
Matches are distributed among these distances:
60 1 0.01
61 31 0.30
62 73 0.70
ACGTcount: A:0.24, C:0.26, G:0.20, T:0.31
Consensus pattern (62 bp):
TCCTTTCAAAGCCCACACAAGTTGGTGGCACCTTTTAGTCCTCAAAGAGCAGGATGCTTTTT
Found at i:1414270 original size:31 final size:31
Alignment explanation
Indices: 1414235--1414294 Score: 102
Period size: 31 Copynumber: 1.9 Consensus size: 31
1414225 GGTGGCCTCA
* *
1414235 TTTTGTCCTCAAAGAGTAGGACTCCTTTTTC
1 TTTTGTCCTCAAAGAGCAGGACCCCTTTTTC
1414266 TTTTGTCCTCAAAGAGCAGGACCCCTTTT
1 TTTTGTCCTCAAAGAGCAGGACCCCTTTT
1414295 AATTTTCAAA
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
31 27 1.00
ACGTcount: A:0.20, C:0.25, G:0.17, T:0.38
Consensus pattern (31 bp):
TTTTGTCCTCAAAGAGCAGGACCCCTTTTTC
Found at i:1414332 original size:154 final size:155
Alignment explanation
Indices: 1414116--1414405 Score: 368
Period size: 154 Copynumber: 1.9 Consensus size: 155
1414106 GCAGCCATTA
** * ** *
1414116 GTCCTCAAAGAGCAGGATGCTTTTTTCCTTTCAAAGCCCACACAAGTTGGTGACACCTTTTAGTC
1 GTCCTCAAAGAGCAGGACCCCTTTTAACTTTCAAAGCCCACACAAGTTGGTGACACCCTTTAGTC
* * * * *
1414181 CTCAAAAAGCAGGGTGCCTTTTTCGTTTCAAA-CCTACACGGGTTGGTGGC-CTCATTTTGTCCT
66 CTCAAAAAGCAGGATGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCAC-CATTTAGTCCT
1414244 CAAAGAGTAGGACTCCTTTTTCTTTT
130 CAAAGAGTAGGACTCCTTTTTCTTTT
* * * * * *
1414270 GTCCTCAAAGAGCAGGACCCCTTTTAATTTTCAAAGCCTACACGAGTTTGTGGCACCCTTTAGTT
1 GTCCTCAAAGAGCAGGACCCCTTTTAACTTTCAAAGCCCACACAAGTTGGTGACACCCTTTAGTC
* * * *
1414335 CTGAAAGAGCAGGATGCCTTTTTCCTTTCAAAGCCCACACGAGTTTGTGGCACCCTTTAGTCCTC
66 CTCAAAAAGCAGGATGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCATTTAGTCCTC
1414400 AAAGAG
131 AAAGAG
1414406 CAAGATGCCC
Statistics
Matches: 113, Mismatches: 21, Indels: 3
0.82 0.15 0.02
Matches are distributed among these distances:
154 81 0.72
155 31 0.27
156 1 0.01
ACGTcount: A:0.23, C:0.26, G:0.20, T:0.31
Consensus pattern (155 bp):
GTCCTCAAAGAGCAGGACCCCTTTTAACTTTCAAAGCCCACACAAGTTGGTGACACCCTTTAGTC
CTCAAAAAGCAGGATGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCATTTAGTCCTC
AAAGAGTAGGACTCCTTTTTCTTTT
Found at i:1414346 original size:62 final size:62
Alignment explanation
Indices: 1414265--1414448 Score: 208
Period size: 62 Copynumber: 3.0 Consensus size: 62
1414255 ACTCCTTTTT
* * *
1414265 CTTTTGTCCTCAAAGAGCAGGACCCCTTTTAATTTTCAAAGCCTACACGAGTTTGTGGCACC
1 CTTTAGTCCTCAAAGAGCAGGACCCCTTTTAACTTTCAAAGCCCACACGAGTTTGTGGCACC
* * ** **
1414327 CTTTAGTTCTGAAAGAGCAGGATGCCTTTTTCCTTTCAAAGCCCACACGAGTTTGTGGCACC
1 CTTTAGTCCTCAAAGAGCAGGACCCCTTTTAACTTTCAAAGCCCACACGAGTTTGTGGCACC
* * * * ** *
1414389 CTTTAGTCCTCAAAGAGCAAGATGCCCTTTT-CCATTCAATTCCCACACGAGTTGGTGGCA
1 CTTTAGTCCTCAAAGAGCAGGA-CCCCTTTTAACTTTCAAAGCCCACACGAGTTTGTGGCA
1414449 ACATTCAGTC
Statistics
Matches: 103, Mismatches: 18, Indels: 2
0.84 0.15 0.02
Matches are distributed among these distances:
62 97 0.94
63 6 0.06
ACGTcount: A:0.24, C:0.27, G:0.19, T:0.30
Consensus pattern (62 bp):
CTTTAGTCCTCAAAGAGCAGGACCCCTTTTAACTTTCAAAGCCCACACGAGTTTGTGGCACC
Found at i:1414538 original size:102 final size:102
Alignment explanation
Indices: 1414357--1414543 Score: 286
Period size: 102 Copynumber: 1.8 Consensus size: 102
1414347 GATGCCTTTT
* *
1414357 TCCTTTCAAAGCCCACACGAGTTTGTGGCACCCTTTAGTCCTCAAAGAGCAAGATGCCCTTTTCC
1 TCCTTTCAAAGCCCACACAAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAAGATGCCCTTTTCC
**
1414422 ATTCAATTCCCACACGAGTTGGTGGCAACATTCAGTC
66 ATTCAAAGCCCACACGAGTTGGTGGCAACATTCAGTC
* **
1414459 TCCTTTCAAAGCCCACACAAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATG-CCTTTTTG
1 TCCTTTCAAAGCCCACACAAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAAGATGCCCTTTTCC
*
1414523 ATTTCAAAGCTCACACGAGTT
66 A-TTCAAAGCCCACACGAGTT
1414544 CATGGCACCC
Statistics
Matches: 76, Mismatches: 8, Indels: 2
0.88 0.09 0.02
Matches are distributed among these distances:
101 7 0.09
102 69 0.91
ACGTcount: A:0.25, C:0.29, G:0.18, T:0.28
Consensus pattern (102 bp):
TCCTTTCAAAGCCCACACAAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAAGATGCCCTTTTCC
ATTCAAAGCCCACACGAGTTGGTGGCAACATTCAGTC
Found at i:1414559 original size:62 final size:62
Alignment explanation
Indices: 1414462--1414892 Score: 460
Period size: 62 Copynumber: 7.0 Consensus size: 62
1414452 TTCAGTCTCC
* * *
1414462 TTTCAAAGCCCACACAAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTTTGA
1 TTTCAAAGCCCACACGAGTTGATGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTTTCA
* * * * * * *
1414524 TTTCAAAGCTCACACGAGTTCATGGCACCCCTTAGTCCTTAAAAAACAGGATGCCTTTTTCG
1 TTTCAAAGCCCACACGAGTTGATGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTTTCA
* * * * * * ** *
1414586 TTTAAAAACCCACATGTGTTGGTAGTGCA---TTTTGTCCTCAAAGAGCAGGACACCTTTTTCT
1 TTTCAAAGCCCACACGAGTTGAT-G-GCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTTTCA
* * * ** *
1414647 TTTCAAAGCCCACAC-ATGTTGTTGGCACCCTTTAGTCCTCAAAGAGCAAGACGTATTTTTCT
1 TTTCAAAGCCCACACGA-GTTGATGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTTTCA
* *
1414709 TTTCAAAGCCCACA-GAAGTTGATGGCACCCTTTAGTCTTCAAAGAGCAGGATGCCTTTTTCC
1 TTTCAAAGCCCACACG-AGTTGATGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTTTCA
* * * * ** *
1414771 TTTCAAAGCCCAAACGAGTTGGTGGCACCCTTCAGTCCTCAAAAAAAAGGATGCCTTTTTCC
1 TTTCAAAGCCCACACGAGTTGATGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTTTCA
*
1414833 TTTCAAAGCCCACACGAGTT-AGTGGCACCCTTTAGTCCTCAAAAAGCAGGATGCCTTTTT
1 TTTCAAAGCCCACACGAGTTGA-TGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTTT
1414893 GAGTGGCACC
Statistics
Matches: 305, Mismatches: 54, Indels: 20
0.80 0.14 0.05
Matches are distributed among these distances:
59 3 0.01
60 1 0.00
61 41 0.13
62 254 0.83
63 3 0.01
64 3 0.01
ACGTcount: A:0.27, C:0.26, G:0.18, T:0.29
Consensus pattern (62 bp):
TTTCAAAGCCCACACGAGTTGATGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTTTCA
Found at i:1415003 original size:164 final size:164
Alignment explanation
Indices: 1414727--1415056 Score: 432
Period size: 164 Copynumber: 2.0 Consensus size: 164
1414717 CCCACAGAAG
** * * *
1414727 TTGATGGCACCCTTTAGTCTTCAAAGAGCAGGATGCCTTTTTCCTTTCAAAGCCCAAACGAGTTG
1 TTGATGGCACCCTTTAGTCCGCAAAGAGCAAGACGCCTGTTTCCTTTCAAAGCCCAAACGAGTTG
* * **
1414792 GTGGCACCCTTCAGTCCTCAAAAAAAAGGATGCCTTTTTCCTTTCAAAGCCCACACGAGTTAG-T
66 GTGGCACCATTCAATCCTCAAAAAAAAGGACACCTTTTTCCTTTCAAAGCCCACACGAGTT-GCT
*
1414856 GGCACCCTTTAGTCCTCAAAAAGCAGGATGCCTTT
130 GGCACCCATTAGTCCTCAAAAAGCAGGATGCCTTT
* * * *
1414891 TTGAGTGGCACCCTTTAGTCCGGAAAGAGGAAGACGCCTGTTTCCTTTCAAAGGCCACAC-AGTT
1 TTGA-TGGCACCCTTTAGTCCGCAAAGAGCAAGACGCCTGTTTCCTTTCAAAGCCCAAACGAGTT
* * * *
1414955 GGTGGCACCATTTAATCCTCAAAGAGAAA-GACACCTTTTTCCTTTCAAAGCCTACATGAGTTGC
65 GGTGGCACCATTCAATCCTCAAA-AAAAAGGACACCTTTTTCCTTTCAAAGCCCACACGAGTTGC
* *
1415019 TGGCACCCATTAGTCCTCGAAGAGCAGGATGCCTTT
129 TGGCACCCATTAGTCCTCAAAAAGCAGGATGCCTTT
1415055 TT
1 TT
1415057 TTCTTTCAAA
Statistics
Matches: 143, Mismatches: 20, Indels: 6
0.85 0.12 0.04
Matches are distributed among these distances:
163 1 0.01
164 92 0.64
165 50 0.35
ACGTcount: A:0.26, C:0.26, G:0.20, T:0.28
Consensus pattern (164 bp):
TTGATGGCACCCTTTAGTCCGCAAAGAGCAAGACGCCTGTTTCCTTTCAAAGCCCAAACGAGTTG
GTGGCACCATTCAATCCTCAAAAAAAAGGACACCTTTTTCCTTTCAAAGCCCACACGAGTTGCTG
GCACCCATTAGTCCTCAAAAAGCAGGATGCCTTT
Found at i:1415098 original size:227 final size:227
Alignment explanation
Indices: 1414669--1415119 Score: 584
Period size: 227 Copynumber: 2.0 Consensus size: 227
1414659 CACATGTTGT
* * * *
1414669 TGGCACCCTTTAGTCCTCAAAGAGCAAGACGTATTTTTCTTTTCAAAGCCCACAGAAGTTGATGG
1 TGGCACCCTTTAGTCCGCAAAGAGCAAGACGCATGTTTCCTTTCAAAGCCCACAGAAGTTGATGG
* * * * * ** *
1414734 CACCCTTTAGTCTTCAAAGAGCAGGATGCCTTTTTCCTTTCAAAGCCCAAACGAGTTGGTGGCAC
66 CACCATTTAATCCTCAAAGAGAAAGACACCTTTTTCCTTTCAAAGCCCAAACGAGTTGCTGGCAC
1414799 CCTTCAGTCCTCAAAAAAAAGGATGCCTTTTTCCTTTCAAAGCCCACACGAGTTAGTGGCACCCT
131 CCTTCAGTCCTCAAAAAAAAGGATGCCTTTTTCCTTTCAAAGCCCACACGAGTTAGTGGCACCCT
1414864 TTAGTCCTCAAAAAGCAGGAT-GCCTTTTTGAG
196 TTAGTCCTCAAAAAGCAGG-TCGCCTTTTTGAG
* * * * * *
1414896 TGGCACCCTTTAGTCCGGAAAGAGGAAGACGCCTGTTTCCTTTCAAAGGCCACA-CAGTTGGTGG
1 TGGCACCCTTTAGTCCGCAAAGAGCAAGACGCATGTTTCCTTTCAAAGCCCACAGAAGTTGATGG
* * *
1414960 CACCATTTAATCCTCAAAGAGAAAGACACCTTTTTCCTTTCAAAGCCTACATGAGTTGCTGGCAC
66 CACCATTTAATCCTCAAAGAGAAAGACACCTTTTTCCTTTCAAAGCCCAAACGAGTTGCTGGCAC
* * ** * *
1415025 CCATT-AGTCCTCGAAGAGCAGGATGCCTTTTTTTCTTTCAAAGCCCACACGAGTTGGTGGCACC
131 CC-TTCAGTCCTCAAAAAAAAGGATGCC-TTTTTCCTTTCAAAGCCCACACGAGTTAGTGGCACC
* * *
1415089 TTTTAGTCCTCAAAGAGTAGGTCGCCTTTTT
194 CTTTAGTCCTCAAAAAGCAGGTCGCCTTTTT
1415120 CTTTTCAAAG
Statistics
Matches: 191, Mismatches: 30, Indels: 6
0.84 0.13 0.03
Matches are distributed among these distances:
226 83 0.43
227 108 0.57
ACGTcount: A:0.26, C:0.26, G:0.20, T:0.28
Consensus pattern (227 bp):
TGGCACCCTTTAGTCCGCAAAGAGCAAGACGCATGTTTCCTTTCAAAGCCCACAGAAGTTGATGG
CACCATTTAATCCTCAAAGAGAAAGACACCTTTTTCCTTTCAAAGCCCAAACGAGTTGCTGGCAC
CCTTCAGTCCTCAAAAAAAAGGATGCCTTTTTCCTTTCAAAGCCCACACGAGTTAGTGGCACCCT
TTAGTCCTCAAAAAGCAGGTCGCCTTTTTGAG
Found at i:1415117 original size:125 final size:123
Alignment explanation
Indices: 1414926--1415243 Score: 390
Period size: 125 Copynumber: 2.6 Consensus size: 123
1414916 AGAGGAAGAC
* * * * * * * *
1414926 GCCTGTTTCCTTTCAAAGGCCACACAGTTGGTGGCACCATTTAATCCTCAAAGAGAAAGACACCT
1 GCCTTTTTGCTTTCAAAGCCCACACAGTTGGTGGCACCATTTAGTCCTCAAAGAGTAGGTCGCCT
* *
1414991 TTTTCCTTTCAAAGC-C-TACATGAGTTGCTGGCACCCATTAGTCCTCGAAGAGCAGGAT
66 TTTTCCTTTCAAAGCTCATACAT--GTTGCTGGCACCCATTAGTCCTCAAAAAGCAGGAT
* *
1415049 GCCTTTTTTTCTTTCAAAGCCCACACGAGTTGGTGGCACCTTTTAGTCCTCAAAGAGTAGGTCGC
1 GCC-TTTTTGCTTTCAAAGCCCACAC-AGTTGGTGGCACCATTTAGTCCTCAAAGAGTAGGTCGC
* * * *
1415114 CTTTTTCTTTTCAAAGCTCATACATGTTGGTGGCACCCTTTAGTCCTCAAAAATCAGGAT
64 CTTTTTCCTTTCAAAGCTCATACATGTTGCTGGCACCCATTAGTCCTCAAAAAGCAGGAT
* * *
1415174 GCCTTTTTGCTTTCAAAGCCAACACTAGTTAGTGGCACCCTTTAGTCCTCAAAGAGTAGGAT-GC
1 GCCTTTTTGCTTTCAAAGCCCACAC-AGTTGGTGGCACCATTTAGTCCTCAAAGAGTAGG-TCGC
1415238 CTTTTT
64 CTTTTT
1415244 GAGTGGTACC
Statistics
Matches: 170, Mismatches: 20, Indels: 9
0.85 0.10 0.05
Matches are distributed among these distances:
123 3 0.02
124 79 0.46
125 82 0.48
126 1 0.01
127 5 0.03
ACGTcount: A:0.24, C:0.25, G:0.19, T:0.31
Consensus pattern (123 bp):
GCCTTTTTGCTTTCAAAGCCCACACAGTTGGTGGCACCATTTAGTCCTCAAAGAGTAGGTCGCCT
TTTTCCTTTCAAAGCTCATACATGTTGCTGGCACCCATTAGTCCTCAAAAAGCAGGAT
Found at i:1415244 original size:62 final size:62
Alignment explanation
Indices: 1414895--1415243 Score: 361
Period size: 62 Copynumber: 5.6 Consensus size: 62
1414885 GCCTTTTTGA
** * * * *
1414895 GTGGCACCCTTTAGTCCGGAAAGAGGAAGACGCCTGTTTCCTTTCAAAGGCC-ACAC-AGTTG
1 GTGGCACCCTTTAGTCCTCAAAGAGTAGGATGCCTTTTTCCTTTCAAA-GCCAACACTAGTTG
* * * * ** *
1414956 GTGGCACCATTTAATCCTCAAAGAGAAAGACACCTTTTTCCTTTCAAAGCCTACA-TGAGTTG
1 GTGGCACCCTTTAGTCCTCAAAGAGTAGGATGCCTTTTTCCTTTCAAAGCCAACACT-AGTTG
* * * * * * *
1415018 CTGGCACCCATTAGTCCTCGAAGAGCAGGATGCCTTTTTTTCTTTCAAAGCCCACACGAGTTG
1 GTGGCACCCTTTAGTCCTCAAAGAGTAGGATGCC-TTTTTCCTTTCAAAGCCAACACTAGTTG
* *
1415081 GTGGCACCTTTTAGTCCTCAAAGAGTAGG-TCGCCTTTTTCTTTTCAAAGCTCATACA-T-GTTG
1 GTGGCACCCTTTAGTCCTCAAAGAGTAGGAT-GCCTTTTTCCTTTCAAAGC-CA-ACACTAGTTG
* * *
1415143 GTGGCACCCTTTAGTCCTCAAA-AATCAGGATGCCTTTTTGCTTTCAAAGCCAACACTAGTTA
1 GTGGCACCCTTTAGTCCTCAAAGAGT-AGGATGCCTTTTTCCTTTCAAAGCCAACACTAGTTG
1415205 GTGGCACCCTTTAGTCCTCAAAGAGTAGGATGCCTTTTT
1 GTGGCACCCTTTAGTCCTCAAAGAGTAGGATGCCTTTTT
1415244 GAGTGGTACC
Statistics
Matches: 241, Mismatches: 34, Indels: 25
0.80 0.11 0.08
Matches are distributed among these distances:
60 6 0.02
61 49 0.20
62 128 0.53
63 55 0.23
64 3 0.01
ACGTcount: A:0.25, C:0.25, G:0.20, T:0.30
Consensus pattern (62 bp):
GTGGCACCCTTTAGTCCTCAAAGAGTAGGATGCCTTTTTCCTTTCAAAGCCAACACTAGTTG
Found at i:1415282 original size:41 final size:41
Alignment explanation
Indices: 1415204--1415284 Score: 108
Period size: 41 Copynumber: 2.0 Consensus size: 41
1415194 AACACTAGTT
** * **
1415204 AGTGGCACCCTTTAGTCCTCAAAGAGTAGGATGCCTTTTTG
1 AGTGGCACCCTTTAGTCCTCAAAGACCAAGACACCTTTTTG
*
1415245 AGTGGTACCCTTTAGTCCTCAAAGACCAAGACACCTTTTT
1 AGTGGCACCCTTTAGTCCTCAAAGACCAAGACACCTTTTT
1415285 CCTTTCAAAG
Statistics
Matches: 34, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
41 34 1.00
ACGTcount: A:0.25, C:0.25, G:0.20, T:0.31
Consensus pattern (41 bp):
AGTGGCACCCTTTAGTCCTCAAAGACCAAGACACCTTTTTG
Found at i:1415392 original size:62 final size:62
Alignment explanation
Indices: 1415246--1415565 Score: 408
Period size: 62 Copynumber: 5.2 Consensus size: 62
1415236 GCCTTTTTGA
* * * * * *
1415246 GTGGTACCCTTTAGTCCTCAAAGACCAAGACACCTTTTTCCTTTCAAAGCCCACA-TAGTCG
1 GTGGCACCCTTTAGTCCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTG
* * * * * * *
1415307 GTGGTACCCTTCAGTCCTTAAAGAGTAGGACACTTTTTTCCTTTCAAAGCTCACACGAGTTG
1 GTGGCACCCTTTAGTCCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTG
* *
1415369 GTGGCACCCTTTAGTCCTCAAAGAGCAGGACGCCTTTTTCTTTTCAAAGCCCACACAAGTTG
1 GTGGCACCCTTTAGTCCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTG
* * *
1415431 GTGGCACCCTTTAGTCCTCAAAGAGCAAGATGCCTTTTTCCTTTCAAAGCCCACACGAGTTT
1 GTGGCACCCTTTAGTCCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTG
* * * * * *
1415493 GTGGCACCCCTTAGTCCTTAAAGAGTAGGATGCCATTTTCCTTTCAATGCCCACACGAGTTG
1 GTGGCACCCTTTAGTCCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTG
*
1415555 GTGGCATCCTT
1 GTGGCACCCTT
1415566 CGGTCTCCTT
Statistics
Matches: 226, Mismatches: 32, Indels: 1
0.87 0.12 0.00
Matches are distributed among these distances:
61 48 0.21
62 178 0.79
ACGTcount: A:0.24, C:0.28, G:0.19, T:0.29
Consensus pattern (62 bp):
GTGGCACCCTTTAGTCCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTG
Found at i:1415577 original size:226 final size:225
Alignment explanation
Indices: 1415345--1415790 Score: 651
Period size: 226 Copynumber: 2.0 Consensus size: 225
1415335 GACACTTTTT
* *
1415345 TCCTTTCAAAGCTCACACGAGTTGGTGGCACCCTT-TAGTCCTCAAAGAGCAGGACGCCTTTTTC
1 TCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTCT-GTCCCCAAAGAGCAGGACGCCTTTTTC
* *
1415409 TTTTCAAAGCCCACACAAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAAGATGCCTTTTTCCTT
65 CTTTAAAAGCCCACACAAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAAGATGCCTTTTTCCTT
* * * **
1415474 TCAAAGCCCACACGAGTTTGTGGCACCCCTTAGTCCTTAAAGAGTAGGATGCCATTTTCCTTTCA
130 TCAAAGCCCACAC-AGTTGGTGGCACCCCTTAGTCCTCAAAGAGCAGGACACCATTTTCCTTTCA
** *
1415539 ATGCCCACACGAGTTGGTGGCATCCTTCGGTC
194 AAACCCACACGAGTTGGTGGCACCCTTCGGTC
* * *
1415571 TCCTTTCAAAGCCCATACTAGTTGGTGGCACCCTTCTGTCCCCAAAGAGCAGGATGCCTTTTTCC
1 TCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTCTGTCCCCAAAGAGCAGGACGCCTTTTTCC
* * * * ** *
1415636 TTTAAAAGCCCACACGAGTTGGTGTCACCTTTTAGTCGTTGAAGAGCACGATGCCTTTTTCCTTT
66 TTTAAAAGCCCACACAAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAAGATGCCTTTTTCCTTT
* *
1415701 CAAAGCCCACACAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGACACCTTTTTCCTTTCAAA
131 CAAAGCCCACACAGTTGGTGGCACCCCTTAGTCCTCAAAGAGCAGGACACCATTTTCCTTTCAAA
1415766 ACCCACACGAGTTGGTGGCACCCTT
196 ACCCACACGAGTTGGTGGCACCCTT
1415791 TAGTCCCTAA
Statistics
Matches: 195, Mismatches: 24, Indels: 3
0.88 0.11 0.01
Matches are distributed among these distances:
225 68 0.35
226 126 0.65
227 1 0.01
ACGTcount: A:0.23, C:0.29, G:0.20, T:0.29
Consensus pattern (225 bp):
TCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTCTGTCCCCAAAGAGCAGGACGCCTTTTTCC
TTTAAAAGCCCACACAAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAAGATGCCTTTTTCCTTT
CAAAGCCCACACAGTTGGTGGCACCCCTTAGTCCTCAAAGAGCAGGACACCATTTTCCTTTCAAA
ACCCACACGAGTTGGTGGCACCCTTCGGTC
Found at i:1415594 original size:40 final size:40
Alignment explanation
Indices: 1415531--1415606 Score: 116
Period size: 40 Copynumber: 1.9 Consensus size: 40
1415521 GATGCCATTT
* *
1415531 TCCTTTCAATGCCCACACGAGTTGGTGGCATCCTTCGGTC
1 TCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTCGGTC
* *
1415571 TCCTTTCAAAGCCCATACTAGTTGGTGGCACCCTTC
1 TCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTC
1415607 TGTCCCCAAA
Statistics
Matches: 32, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
40 32 1.00
ACGTcount: A:0.17, C:0.33, G:0.20, T:0.30
Consensus pattern (40 bp):
TCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTCGGTC
Found at i:1415647 original size:102 final size:102
Alignment explanation
Indices: 1415469--1415659 Score: 276
Period size: 102 Copynumber: 1.9 Consensus size: 102
1415459 GATGCCTTTT
* ** *
1415469 TCCTTTCAAAGCCCACACGAGTTTGTGGCACCCCTTAGTCCTTAAAGAGTAGGATGCCATTTTCC
1 TCCTTTCAAAGCCCACACGAGTTGGTGGCACCCCTTAGTCCCCAAAGAGCAGGATGCCATTTTCC
* *
1415534 TTTCAATGCCCACACGAGTTGGTGGCATCCTTCGGTC
66 TTTAAAAGCCCACACGAGTTGGTGGCATCCTTCGGTC
* * * *
1415571 TCCTTTCAAAGCCCATACTAGTTGGTGGCA-CCCTTCTGTCCCCAAAGAGCAGGATGCCTTTTTC
1 TCCTTTCAAAGCCCACACGAGTTGGTGGCACCCCTT-AGTCCCCAAAGAGCAGGATGCCATTTTC
1415635 CTTTAAAAGCCCACACGAGTTGGTG
65 CTTTAAAAGCCCACACGAGTTGGTG
1415660 TCACCTTTTA
Statistics
Matches: 78, Mismatches: 10, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
101 5 0.06
102 73 0.94
ACGTcount: A:0.21, C:0.29, G:0.20, T:0.29
Consensus pattern (102 bp):
TCCTTTCAAAGCCCACACGAGTTGGTGGCACCCCTTAGTCCCCAAAGAGCAGGATGCCATTTTCC
TTTAAAAGCCCACACGAGTTGGTGGCATCCTTCGGTC
Found at i:1415681 original size:62 final size:62
Alignment explanation
Indices: 1415571--1417113 Score: 1589
Period size: 62 Copynumber: 25.0 Consensus size: 62
1415561 TCCTTCGGTC
* * *
1415571 TCCTTTCAAAGCCCATACTAGTTGGTGGCACCCTTCT-GTCCCCAAAGAGCAGGATGCCTTTT
1 TCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTT-TAGTCCTCAAAGAGCAGGATGCCTTTT
* * * * ** *
1415633 TCCTTTAAAAGCCCACACGAGTTGGTGTCACCTTTTAGTCGTTGAAGAGCACGATGCCTTTT
1 TCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTT
**
1415695 TCCTTTCAAAGCCCACAC-AGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGACACCTTTT
1 TCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTT
*
1415756 TCCTTTCAAAACCCACACGAGTTGGTGGCACCCTTTAGTCC-CTAAAGAGCAGGATGCCTTTT
1 TCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGTCCTC-AAAGAGCAGGATGCCTTTT
* * * * * * **
1415818 TCCTTTCAAAGCCCACACGGGTAGGTGGCTCCCTTTAGCCCTTAAAAAGCCA-GACACCTTTT
1 TCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGTCCTCAAAGAG-CAGGATGCCTTTT
* * * * * * *
1415880 TCCTTTCAAAGGCCACACGAGTCGGTGGCTCTCTTTTGTCCTCAAAGAGTAGGATGCTTTTT
1 TCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTT
* **
1415942 TCCTTTCAAAGCCCACACGAGTTGGAGGCACCCTTTAGTCCTCAAAGAGTGGGATGCCTTTT
1 TCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTT
* * *
1416004 TCATTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGTCCTCAAAGAGGAGGATGTCTTTT
1 TCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTT
* ** * ** * * *
1416066 TCC-ATCAAAAGGGCAAACGAGTTGGTGGCATTCTTTAGCCCTCAATGAGCAAGATG-CTTCTT
1 TCCTTTC-AAAGCCCACACGAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTT-TT
* ** * * **
1416128 T-CTTTCAAAGCCCAAACGAGTTGGTGGCATTCTTTTGTCCTCAAAGAGCAAGACACCTTTT
1 TCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTT
* * * * *
1416189 TCCTTTCAAATCCCACACGAGTTGG-GGGACCCTTTACTCCTTAAAGAGCCA-GAAGCCTTTT
1 TCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGTCCTCAAAGAG-CAGGATGCCTTTT
* * * * ** * * *
1416250 TCTTTTCAAAGCCCGCATGGGTTGGTCACACCATTTTGTCCTCAAAGAG-AGTGATACCTTTT
1 TCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAG-GATGCCTTTT
* * * * *
1416312 TCTTTTCAAAGCCCACACAAGTTGGTGGCACCCTTTACTCCTTAAAGAGCAGGATGCTTTTT
1 TCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTT
* * *
1416374 TCTTTTCAAAGCCCACACGGGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAAGACATG--TTTT
1 TCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGTCCTCAAAGAGC-AG-GATGCCTTTT
* * * * * *
1416436 TCCTTTTAAAGCCCACACAAGTTGGTGGCACCTTTTGGTTCTCAAAGAGCAAGATGCCTTTT
1 TCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTT
* * * *
1416498 TCCTTTCAAAGCCCGCACGAGTTGGTGGCACCCTTTAGTCCTCAAAAAGCAGAAAGCCTTTT
1 TCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTT
* * * * * * * *
1416560 TCCTTTCAAAGCCCACATC-A-TTAGCGACAACCTTTAGTCCTCAAAAAGTAAGACGCCTTTT
1 TCCTTTCAAAGCCCACA-CGAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTT
* ** ** *
1416621 CCCTTTCAAAGCCTGCAC-AGTTGGTGGCACATTTTAGTCCTCAAAGAGCCGGATTGCCTTTT
1 TCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGA-TGCCTTTT
* * * * * * *
1416683 TCTTTTCAGAGCCCAGAGGGGTTGGTGGCACCCTTTACTCCTCAAAGAGGAGGATGCCTTTT
1 TCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTT
* * * * * * *
1416745 TCC--TCAAAGGCCATACGAGTTTGTGGCACCCTTTAGTCCTTAAAAAGCAGGATACCATTT
1 TCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTT
* * * * * * * * **
1416805 TCGTTTCAAAACCTACACGGGTTGGTGG-TCCATTTTGTCCTCAAAGAGTAGGACACCTTTT
1 TCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTT
* * * * * **
1416866 TCTTTTCAAA-CCACACACGTGTTGTTGGCACCCTTTAGTCCTCAAAGAGCAAGACGTATTTT
1 TCCTTTCAAAGCC-CACACGAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTT
*
1416928 TCCTTTCAAAGCCCACA-GAAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGGCTTTT
1 TCCTTTCAAAGCCCACACG-AGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTT
* * * * * * *
1416990 TCCTTTCAAAGCCCGCACTAGTTGGTGGTA-CCTTCAGTCCTCAAAAAGCAGGACGCATTTT
1 TCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTT
* *
1417051 TCCTTTCAAATCCCACACGAGTTGGTGGCACCCTTTAGTCCTCAAAGAGTAGGATGCCTTTT
1 TCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTT
1417113 T
1 T
1417114 GAGTGGCACC
Statistics
Matches: 1214, Mismatches: 235, Indels: 64
0.80 0.16 0.04
Matches are distributed among these distances:
60 55 0.05
61 321 0.26
62 797 0.66
63 38 0.03
64 3 0.00
ACGTcount: A:0.24, C:0.27, G:0.20, T:0.30
Consensus pattern (62 bp):
TCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTT
Found at i:1415698 original size:164 final size:163
Alignment explanation
Indices: 1415410--1415728 Score: 469
Period size: 164 Copynumber: 2.0 Consensus size: 163
1415400 GCCTTTTTCT
*
1415410 TTTCAAAGCCCACACAAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAAGATGCCTTTTTCCTTT
1 TTTCAAAGCCCACACAAGTTGGTGGCACCCTTTAGTCCCCAAAGAGCAAGATGCCTTTTTCCTTT
* * * *
1415475 CAAAGCCCACACGAGTTTGTGGCACCCCTTAGTCCTTAAAGAGTAGGATGCCATTTTCCTTTCAA
66 AAAAGCCCACACGAGTTGGTGGCACCCCTTAGTCCTTAAAGAGCACGATGCCATTTTCCTTTCAA
* *
1415540 TGCCCACACGAGTTGGTGGCATCCTTCGGTCTCC
131 AGCCCACAC-AGTTGGTGGCACCCTTCGGTCTCC
* * *
1415574 TTTCAAAGCCCATACTAGTTGGTGGCACCCTTCT-GTCCCCAAAGAGCAGGATGCCTTTTTCCTT
1 TTTCAAAGCCCACACAAGTTGGTGGCACCCTT-TAGTCCCCAAAGAGCAAGATGCCTTTTTCCTT
* ** * * *
1415638 TAAAAGCCCACACGAGTTGGTGTCACCTTTTAGTCGTTGAAGAGCACGATGCCTTTTTCCTTTCA
65 TAAAAGCCCACACGAGTTGGTGGCACCCCTTAGTCCTTAAAGAGCACGATGCCATTTTCCTTTCA
1415703 AAGCCCACACAGTTGGTGGCACCCTT
130 AAGCCCACACAGTTGGTGGCACCCTT
1415729 TAGTCCTCAA
Statistics
Matches: 138, Mismatches: 16, Indels: 3
0.88 0.10 0.02
Matches are distributed among these distances:
163 15 0.11
164 122 0.88
165 1 0.01
ACGTcount: A:0.22, C:0.29, G:0.20, T:0.29
Consensus pattern (163 bp):
TTTCAAAGCCCACACAAGTTGGTGGCACCCTTTAGTCCCCAAAGAGCAAGATGCCTTTTTCCTTT
AAAAGCCCACACGAGTTGGTGGCACCCCTTAGTCCTTAAAGAGCACGATGCCATTTTCCTTTCAA
AGCCCACACAGTTGGTGGCACCCTTCGGTCTCC
Found at i:1415883 original size:185 final size:186
Alignment explanation
Indices: 1415571--1417113 Score: 1569
Period size: 185 Copynumber: 8.3 Consensus size: 186
1415561 TCCTTCGGTC
* * *
1415571 TCCTTTCAAAGCCCATACTAGTTGGTGGCACCCTTCT-GTCCCCAAAGAGCAGGATGCCTTTTTC
1 TCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTT-TAGTCCTCAAAGAGCAGGATGCCTTTTTC
* * * * ** * *
1415635 CTTTAAAAGCCCACACGAGTTGGTGTCACCTTTTAGTCGTTGAAGAGCACGATGCCTTTTTCCTT
65 CTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATACCTTTTTCCTT
**
1415700 TCAAAGCCCACAC-AGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGACACCTTTT
130 TCAAAGCCCACACGAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTT
*
1415756 TCCTTTCAAAACCCACACGAGTTGGTGGCACCCTTTAGTCC-CTAAAGAGCAGGATGCCTTTTTC
1 TCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGTCCTC-AAAGAGCAGGATGCCTTTTTC
* * * * * * *
1415820 CTTTCAAAGCCCACACGGGTAGGTGGCTCCCTTTAGCCCTTAAAAAGCCA-GACACCTTTTTCCT
65 CTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGTCCTCAAAGAG-CAGGATACCTTTTTCCT
* * * * * * *
1415884 TTCAAAGGCCACACGAGTCGGTGGCTCTCTTTTGTCCTCAAAGAGTAGGATGCTTTTT
129 TTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTT
* ** *
1415942 TCCTTTCAAAGCCCACACGAGTTGGAGGCACCCTTTAGTCCTCAAAGAGTGGGATGCCTTTTTCA
1 TCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTTTCC
* ** *
1416007 TTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGTCCTCAAAGAGGAGGATGTCTTTTTCC-AT
66 TTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATACCTTTTTCCTTT
** * ** * * *
1416071 CAAAAGGGCAAACGAGTTGGTGGCATTCTTTAGCCCTCAATGAGCAAGATG-CTTCTT
131 C-AAAGCCCACACGAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTT-TT
* ** * * **
1416128 T-CTTTCAAAGCCCAAACGAGTTGGTGGCATTCTTTTGTCCTCAAAGAGCAAGACACCTTTTTCC
1 TCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTTTCC
* * * * *
1416192 TTTCAAATCCCACACGAGTTGG-GGGACCCTTTACTCCTTAAAGAGCCA-GA-AGCCTTTTTCTT
66 TTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGTCCTCAAAGAG-CAGGATA-CCTTTTTCCT
* * * ** * * *
1416254 TTCAAAGCCCGCATGGGTTGGTCACACCATTTTGTCCTCAAAGAG-AGTGATACCTTTT
129 TTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAG-GATGCCTTTT
* * * * * *
1416312 TCTTTTCAAAGCCCACACAAGTTGGTGGCACCCTTTACTCCTTAAAGAGCAGGATGCTTTTTTCT
1 TCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTTTCC
* * * **
1416377 TTTCAAAGCCCACACGGGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAAGACATGTTTTTCCTTT
66 TTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATACCTTTTTCCTTT
* * * * * *
1416442 TAAAGCCCACACAAGTTGGTGGCACCTTTTGGTTCTCAAAGAGCAAGATGCCTTTT
131 CAAAGCCCACACGAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTT
* * * *
1416498 TCCTTTCAAAGCCCGCACGAGTTGGTGGCACCCTTTAGTCCTCAAAAAGCAGAAAGCCTTTTTCC
1 TCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTTTCC
* * * * * * * ** *
1416563 TTTCAAAGCCCACATC-A-TTAGCGACAACCTTTAGTCCTCAAAAAGTAAGACGCCTTTTCCCTT
66 TTTCAAAGCCCACA-CGAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATACCTTTTTCCTT
** ** *
1416626 TCAAAGCCTGCAC-AGTTGGTGGCACATTTTAGTCCTCAAAGAGCCGGATTGCCTTTT
130 TCAAAGCCCACACGAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGA-TGCCTTTT
* * * * * * *
1416683 TCTTTTCAGAGCCCAGAGGGGTTGGTGGCACCCTTTACTCCTCAAAGAGGAGGATGCCTTTTTCC
1 TCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTTTCC
* * * * * * *
1416748 --TCAAAGGCCATACGAGTTTGTGGCACCCTTTAGTCCTTAAAAAGCAGGATACCATTTTCGTTT
66 TTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATACCTTTTTCCTTT
* * * * * * * **
1416811 CAAAACCTACACGGGTTGGTGG-TCCATTTTGTCCTCAAAGAGTAGGACACCTTTT
131 CAAAGCCCACACGAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTT
* * * * * **
1416866 TCTTTTCAAA-CCACACACGTGTTGTTGGCACCCTTTAGTCCTCAAAGAGCAAGACGTATTTTTC
1 TCCTTTCAAAGCC-CACACGAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTTTC
**
1416930 CTTTCAAAGCCCACA-GAAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGGCTTTTTCCT
65 CTTTCAAAGCCCACACG-AGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATACCTTTTTCCT
* * * * * * *
1416994 TTCAAAGCCCGCACTAGTTGGTGGTA-CCTTCAGTCCTCAAAAAGCAGGACGCATTTT
129 TTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTT
* *
1417051 TCCTTTCAAATCCCACACGAGTTGGTGGCACCCTTTAGTCCTCAAAGAGTAGGATGCCTTTTT
1 TCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTTT
1417114 GAGTGGCACC
Statistics
Matches: 1103, Mismatches: 226, Indels: 58
0.80 0.16 0.04
Matches are distributed among these distances:
182 3 0.00
183 69 0.06
184 160 0.15
185 536 0.49
186 331 0.30
187 4 0.00
ACGTcount: A:0.24, C:0.27, G:0.20, T:0.30
Consensus pattern (186 bp):
TCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTTTCC
TTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATACCTTTTTCCTTT
CAAAGCCCACACGAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTT
Found at i:1417132 original size:41 final size:41
Alignment explanation
Indices: 1417075--1417154 Score: 133
Period size: 41 Copynumber: 2.0 Consensus size: 41
1417065 ACACGAGTTG
* * *
1417075 GTGGCACCCTTTAGTCCTCAAAGAGTAGGATGCCTTTTTGA
1 GTGGCACCCTTTAGTCCTCAAAAAGCAAGATGCCTTTTTGA
1417116 GTGGCACCCTTTAGTCCTCAAAAAGCAAGATGCCTTTTT
1 GTGGCACCCTTTAGTCCTCAAAAAGCAAGATGCCTTTTT
1417155 CCTTTCAAAG
Statistics
Matches: 36, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
41 36 1.00
ACGTcount: A:0.24, C:0.24, G:0.21, T:0.31
Consensus pattern (41 bp):
GTGGCACCCTTTAGTCCTCAAAAAGCAAGATGCCTTTTTGA
Found at i:1417155 original size:164 final size:164
Alignment explanation
Indices: 1416952--1417277 Score: 474
Period size: 164 Copynumber: 2.0 Consensus size: 164
1416942 ACAGAAGTTG
* * * * *
1416952 GTGGCACCCTTTAGTCCTCAAAGAGCAGGATGGCTTTTTCCTTTCAAAGCCCGCACTAGTTGGTG
1 GTGGCACCCTTTAGTCCTCAAAAAGCAAGATGCCTTTTTCCTTTCAAAGCCCACAC-AATTGGTG
* * * * *
1417017 GTA-CCTTCAGTCCTCAAAAAGCAGGACGCATTTTTCCTTTCAAATCCCACACGAGTTGGTGGCA
65 GCACCCTTCAGTCCTCAAAAAGCAAGACACATTTTTCCTTTCAAAGCCCACACGAGTTGCTGGCA
*
1417081 CCCTTTAGTCCTCAAAGAGTAGGATGCCTTTTTGA
130 CCCTTTAGTCCTCAAAGAGCAGGATGCCTTTTTGA
*
1417116 GTGGCACCCTTTAGTCCTCAAAAAGCAAGATGCCTTTTTCCTTTCAAAGCCCACACAATTGTTGG
1 GTGGCACCCTTTAGTCCTCAAAAAGCAAGATGCCTTTTTCCTTTCAAAGCCCACACAATTGGTGG
* * * *
1417181 CACCCTTTAGTCCTCAAAGAGCAAGACACCTTTTTCCTTTCAAAGCCTACACGAGTTGCTGGCAC
66 CACCCTTCAGTCCTCAAAAAGCAAGACACATTTTTCCTTTCAAAGCCCACACGAGTTGCTGGCAC
* *
1417246 CCTTTAGTCCTCAAATAGCAGGATGGCTTTTT
131 CCTTTAGTCCTCAAAGAGCAGGATGCCTTTTT
1417278 CTTTTCAAAG
Statistics
Matches: 143, Mismatches: 18, Indels: 2
0.88 0.11 0.01
Matches are distributed among these distances:
163 8 0.06
164 135 0.94
ACGTcount: A:0.24, C:0.27, G:0.19, T:0.29
Consensus pattern (164 bp):
GTGGCACCCTTTAGTCCTCAAAAAGCAAGATGCCTTTTTCCTTTCAAAGCCCACACAATTGGTGG
CACCCTTCAGTCCTCAAAAAGCAAGACACATTTTTCCTTTCAAAGCCCACACGAGTTGCTGGCAC
CCTTTAGTCCTCAAAGAGCAGGATGCCTTTTTGA
Found at i:1417276 original size:62 final size:62
Alignment explanation
Indices: 1417116--1417440 Score: 454
Period size: 62 Copynumber: 5.3 Consensus size: 62
1417106 GCCTTTTTGA
* *
1417116 GTGGCACCCTTTAGTCCTCAAAAAGCAAGATGCCTTTTTCCTTTCAAAGCCCACAC-AATTG
1 GTGGCACCCTTTAGTCCTCAAAGAGCAAGATGCCTTTTTCCTTTCAAAGCCCACACGAGTTG
* ** *
1417177 TTGGCACCCTTTAGTCCTCAAAGAGCAAGACACCTTTTTCCTTTCAAAGCCTACACGAGTTG
1 GTGGCACCCTTTAGTCCTCAAAGAGCAAGATGCCTTTTTCCTTTCAAAGCCCACACGAGTTG
* * * * * *
1417239 CTGGCACCCTTTAGTCCTCAAATAGCAGGATGGCTTTTTCTTTTCAAAGCCCACACAAGTTG
1 GTGGCACCCTTTAGTCCTCAAAGAGCAAGATGCCTTTTTCCTTTCAAAGCCCACACGAGTTG
* * * * *
1417301 GTGGCACCCTTTAGTCTTCAAAGAGCTAGATGCCTTTTTCTTTTCAAAGCACACACGAGTTT
1 GTGGCACCCTTTAGTCCTCAAAGAGCAAGATGCCTTTTTCCTTTCAAAGCCCACACGAGTTG
* * *
1417363 GTGGGACCTTTTAGTCCTCAAAGAGCAAGATGCCTTTTTCCTTTCAACGCCCACACGAGTTG
1 GTGGCACCCTTTAGTCCTCAAAGAGCAAGATGCCTTTTTCCTTTCAAAGCCCACACGAGTTG
*
1417425 GTGGCACCCTTCAGTC
1 GTGGCACCCTTTAGTC
1417441 TCCTTTCAAA
Statistics
Matches: 228, Mismatches: 35, Indels: 1
0.86 0.13 0.00
Matches are distributed among these distances:
61 51 0.22
62 177 0.78
ACGTcount: A:0.24, C:0.28, G:0.18, T:0.30
Consensus pattern (62 bp):
GTGGCACCCTTTAGTCCTCAAAGAGCAAGATGCCTTTTTCCTTTCAAAGCCCACACGAGTTG
Found at i:1417286 original size:226 final size:226
Alignment explanation
Indices: 1416891--1417339 Score: 652
Period size: 226 Copynumber: 2.0 Consensus size: 226
1416881 CACGTGTTGT
* * *
1416891 TGGCACCCTTTAGTCCTCAAAGAGCAAGACGTATTTTTCCTTTCAAAGCCCACAGAAGTTGGTGG
1 TGGCACCCTTTAGTCCTCAAAAAGCAAGACGCATTTTTCCTTTCAAAGCCCACACAAGTTGGTGG
* *** * * * *
1416956 CACCCTTTAGTCCTCAAAGAGCAGGATGGCTTTTTCCTTTCAAAGCCCGCACTAGTTGGTGGTAC
66 CACCCTTTAGTCCTCAAAGAGCAAGACACCTTTTTCCTTTCAAAGCCCACACGAGTTGCTGGCAC
* *
1417021 CTTCAGTCCTCAAAAAGCAGGACGCATTTTTCCTTTCAAATCCCACACGAGTTGGTGGCACCCTT
131 CTTCAGTCCTCAAAAAGCAGGACGCATTTTTCCTTTCAAAGCCCACACAAGTTGGTGGCACCCTT
1417086 TAGTCCTCAAAGAG-TAGGATGCCTTTTTGAG
196 TAGTCCTCAAAGAGCTA-GATGCCTTTTTGAG
* * *
1417117 TGGCACCCTTTAGTCCTCAAAAAGCAAGATGCCTTTTTCCTTTCAAAGCCCACACAA-TTGTTGG
1 TGGCACCCTTTAGTCCTCAAAAAGCAAGACGCATTTTTCCTTTCAAAGCCCACACAAGTTGGTGG
*
1417181 CACCCTTTAGTCCTCAAAGAGCAAGACACCTTTTTCCTTTCAAAGCCTACACGAGTTGCTGGCAC
66 CACCCTTTAGTCCTCAAAGAGCAAGACACCTTTTTCCTTTCAAAGCCCACACGAGTTGCTGGCA-
* * * *
1417246 CCTTTAGTCCTCAAATAGCAGGATGGC-TTTTTCTTTTCAAAGCCCACACAAGTTGGTGGCACCC
130 CCTTCAGTCCTCAAAAAGCAGGA-CGCATTTTTCCTTTCAAAGCCCACACAAGTTGGTGGCACCC
*
1417310 TTTAGTCTTCAAAGAGCTAGATGCCTTTTT
194 TTTAGTCCTCAAAGAGCTAGATGCCTTTTT
1417340 CTTTTCAAAG
Statistics
Matches: 198, Mismatches: 22, Indels: 6
0.88 0.10 0.03
Matches are distributed among these distances:
225 61 0.31
226 133 0.67
227 4 0.02
ACGTcount: A:0.25, C:0.27, G:0.19, T:0.30
Consensus pattern (226 bp):
TGGCACCCTTTAGTCCTCAAAAAGCAAGACGCATTTTTCCTTTCAAAGCCCACACAAGTTGGTGG
CACCCTTTAGTCCTCAAAGAGCAAGACACCTTTTTCCTTTCAAAGCCCACACGAGTTGCTGGCAC
CTTCAGTCCTCAAAAAGCAGGACGCATTTTTCCTTTCAAAGCCCACACAAGTTGGTGGCACCCTT
TAGTCCTCAAAGAGCTAGATGCCTTTTTGAG
Found at i:1417447 original size:226 final size:226
Alignment explanation
Indices: 1417215--1417666 Score: 602
Period size: 226 Copynumber: 2.0 Consensus size: 226
1417205 GACACCTTTT
* * * * * *** *
1417215 TCCTTTCAAAGCCTACACGAGTTGCTGGCACCCTTTAGTCCTCAAATAGCAGGATGGCTTTTTCT
1 TCCTTTCAAAGCCCACACAAATTGCTGGCACCCTTTAGTCCTCAAAGAGCAAGACACCTTTTTCA
* * *
1417280 TTTCAAAGCCCACACAAGTTGGTGGCACCCTTTAGTCTTCAAAGAGCTA-GA-TGCCTTTTTCTT
66 TTTCAAAGCCCACACAAGTTGGTGGCACCCTTTAGTCCTCAAAGAG-TAGGACAG-CTTTTTCCT
* * * *
1417343 TTCAAAGCACACACGAGTTTGTGGGACCTTTTAGTCCTCAAAGAGCAAGATGCCTTTTTCCTTTC
129 TTCAAAGCACACACGAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAAGATGCCTTTTTCATTTC
*
1417408 AACGCCCACACGAGTTGGTGGCACCCTTCAGTC
194 AACGCCCACACAAGTTGGTGGCACCCTTCAGTC
*
1417441 TCCTTTCAAAGCCCACACAAATTGGTGGCACCCTTTAGTCCTCAAAGAGCAAGACACCTTTTTCA
1 TCCTTTCAAAGCCCACACAAATTGCTGGCACCCTTTAGTCCTCAAAGAGCAAGACACCTTTTTCA
* ** * *
1417506 TTTCAAAGCCTACAGGAGTTGTTGGCACCCTTTAGTCCTCGAAGAGTAGGACAGCTTTTTCCTTT
66 TTTCAAAGCCCACACAAGTTGGTGGCACCCTTTAGTCCTCAAAGAGTAGGACAGCTTTTTCCTTT
* * *
1417571 CAAAGCCCACACGAGTTGGTGGCACCCTTTAGTGCTCAAAGAGCAGGATGCCTTTTTCATTTCAA
131 CAAAGCACACACGAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAAGATGCCTTTTTCATTTCAA
* * * *
1417636 CTCCCGCATAAGTTGGTGGCACCCTTTAGTC
196 CGCCCACACAAGTTGGTGGCACCCTTCAGTC
1417667 CTCAAAGAGC
Statistics
Matches: 194, Mismatches: 30, Indels: 4
0.85 0.13 0.02
Matches are distributed among these distances:
225 2 0.01
226 191 0.98
227 1 0.01
ACGTcount: A:0.24, C:0.27, G:0.19, T:0.30
Consensus pattern (226 bp):
TCCTTTCAAAGCCCACACAAATTGCTGGCACCCTTTAGTCCTCAAAGAGCAAGACACCTTTTTCA
TTTCAAAGCCCACACAAGTTGGTGGCACCCTTTAGTCCTCAAAGAGTAGGACAGCTTTTTCCTTT
CAAAGCACACACGAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAAGATGCCTTTTTCATTTCAA
CGCCCACACAAGTTGGTGGCACCCTTCAGTC
Found at i:1417456 original size:40 final size:40
Alignment explanation
Indices: 1417401--1417480 Score: 124
Period size: 40 Copynumber: 2.0 Consensus size: 40
1417391 GATGCCTTTT
* * *
1417401 TCCTTTCAACGCCCACACGAGTTGGTGGCACCCTTCAGTC
1 TCCTTTCAAAGCCCACACAAATTGGTGGCACCCTTCAGTC
*
1417441 TCCTTTCAAAGCCCACACAAATTGGTGGCACCCTTTAGTC
1 TCCTTTCAAAGCCCACACAAATTGGTGGCACCCTTCAGTC
1417481 CTCAAAGAGC
Statistics
Matches: 36, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
40 36 1.00
ACGTcount: A:0.21, C:0.35, G:0.17, T:0.26
Consensus pattern (40 bp):
TCCTTTCAAAGCCCACACAAATTGGTGGCACCCTTCAGTC
Found at i:1417525 original size:102 final size:102
Alignment explanation
Indices: 1417342--1417542 Score: 276
Period size: 102 Copynumber: 2.0 Consensus size: 102
1417332 GCCTTTTTCT
* * * * * ** *
1417342 TTTCAAAGCACACACGAGTTTGTGGGACCTTTTAGTCCTCAAAGAGCAAGATGCCTTTTTCCTTT
1 TTTCAAAGCACACACAAATTGGTGGCACCCTTTAGTCCTCAAAGAGCAAGACACCTTTTTCATTT
*
1417407 CAACGCCCACACGAGTTGGTGGCACCCTTCAGTCTCC
66 CAAAGCCCACACGAGTTGGTGGCACCCTTCAGTCTCC
*
1417444 TTTCAAAGCCCACACAAATTGGTGGCACCCTTTAGTCCTCAAAGAGCAAGACACCTTTTTCATTT
1 TTTCAAAGCACACACAAATTGGTGGCACCCTTTAGTCCTCAAAGAGCAAGACACCTTTTTCATTT
* * * *
1417509 CAAAGCCTACAGGAGTTGTTGGCACCCTTTAGTC
66 CAAAGCCCACACGAGTTGGTGGCACCCTTCAGTC
1417543 CTCGAAGAGT
Statistics
Matches: 85, Mismatches: 14, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
102 85 1.00
ACGTcount: A:0.25, C:0.28, G:0.18, T:0.28
Consensus pattern (102 bp):
TTTCAAAGCACACACAAATTGGTGGCACCCTTTAGTCCTCAAAGAGCAAGACACCTTTTTCATTT
CAAAGCCCACACGAGTTGGTGGCACCCTTCAGTCTCC
Found at i:1417541 original size:62 final size:62
Alignment explanation
Indices: 1417441--1417790 Score: 461
Period size: 62 Copynumber: 5.6 Consensus size: 62
1417431 CCCTTCAGTC
* * * *
1417441 TCCTTTCAAAGCCCACACAAATTGGTGGCACCCTTTAGTCCTCAAAGAGCAAGACACCTTTT
1 TCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGACGCCTTTT
* * * * * *
1417503 TCATTTCAAAGCCTACAGGAGTTGTTGGCACCCTTTAGTCCTCGAAGAGTAGGACAG-CTTTT
1 TCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGAC-GCCTTTT
* *
1417565 TCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGTGCTCAAAGAGCAGGATGCCTTTT
1 TCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGACGCCTTTT
* ** * **
1417627 TCATTTCAACTCCCGCATAAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGACGCCTTTT
1 TCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGACGCCTTTT
* * *
1417689 TCCTTTCAAAGCCCACACGAGTTTGTGGCACCCTTTAGTCCTCAAAGAGCAAGATGCCTTTT
1 TCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGACGCCTTTT
* *
1417751 TCCTTTCAACGCCCACACGACTTGGTGGCA-CCTTTCAGTC
1 TCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTT-AGTC
1417791 TCCTTTCAAA
Statistics
Matches: 247, Mismatches: 38, Indels: 6
0.85 0.13 0.02
Matches are distributed among these distances:
61 6 0.02
62 241 0.98
ACGTcount: A:0.24, C:0.29, G:0.19, T:0.28
Consensus pattern (62 bp):
TCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGACGCCTTTT
Found at i:1417566 original size:164 final size:164
Alignment explanation
Indices: 1417280--1417599 Score: 466
Period size: 164 Copynumber: 2.0 Consensus size: 164
1417270 GGCTTTTTCT
* * * ** *
1417280 TTTCAAAGCCCACACAAGTTGGTGGCACCCTTTAGTCTTCAAAGAGCTAGATGCCTTTTTCTTTT
1 TTTCAAAGCCCACACAAATTGGTGGCACCCTTTAGTCCTCAAAGAGCAAGACACCTTTTTCATTT
* * *
1417345 CAAAGCACACACGAGTTTGTGGGACCTTTTAGTCCTCAAAGAGCAAGATGCCTTTTTCCTTTCAA
66 CAAAGCACACACGAGTTTGTGGCACCCTTTAGTCCTCAAAGAGCAAGAAGCCTTTTTCCTTTCAA
*
1417410 CGCCCACACGAGTTGGTGGCACCCTTCAGTCTCC
131 AGCCCACACGAGTTGGTGGCACCCTTCAGTCTCC
1417444 TTTCAAAGCCCACACAAATTGGTGGCACCCTTTAGTCCTCAAAGAGCAAGACACCTTTTTCATTT
1 TTTCAAAGCCCACACAAATTGGTGGCACCCTTTAGTCCTCAAAGAGCAAGACACCTTTTTCATTT
* * * *
1417509 CAAAGC-CTACAGGAG-TTGTTGGCACCCTTTAGTCCTCGAAGAGTAGGACAG-CTTTTTCCTTT
66 CAAAGCAC-ACACGAGTTTG-TGGCACCCTTTAGTCCTCAAAGAGCAAGA-AGCCTTTTTCCTTT
1417571 CAAAGCCCACACGAGTTGGTGGCACCCTT
128 CAAAGCCCACACGAGTTGGTGGCACCCTT
1417600 TAGTGCTCAA
Statistics
Matches: 139, Mismatches: 14, Indels: 6
0.87 0.09 0.04
Matches are distributed among these distances:
163 4 0.03
164 134 0.96
165 1 0.01
ACGTcount: A:0.24, C:0.28, G:0.19, T:0.29
Consensus pattern (164 bp):
TTTCAAAGCCCACACAAATTGGTGGCACCCTTTAGTCCTCAAAGAGCAAGACACCTTTTTCATTT
CAAAGCACACACGAGTTTGTGGCACCCTTTAGTCCTCAAAGAGCAAGAAGCCTTTTTCCTTTCAA
AGCCCACACGAGTTGGTGGCACCCTTCAGTCTCC
Found at i:1417796 original size:40 final size:40
Alignment explanation
Indices: 1417751--1417830 Score: 117
Period size: 40 Copynumber: 2.0 Consensus size: 40
1417741 GATGCCTTTT
* *
1417751 TCCTTTCAACGCCCACACGACTTGGTGGC-ACCTTTCAGTC
1 TCCTTTCAAAGCCCACACAACTTGGTGGCAACCTTT-AGTC
*
1417791 TCCTTTCAAAGCCCACACAAGTTGGTGGCAACCTTTAGTC
1 TCCTTTCAAAGCCCACACAACTTGGTGGCAACCTTTAGTC
1417831 CTCAAAGAGC
Statistics
Matches: 36, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
40 30 0.83
41 6 0.17
ACGTcount: A:0.21, C:0.34, G:0.17, T:0.28
Consensus pattern (40 bp):
TCCTTTCAAAGCCCACACAACTTGGTGGCAACCTTTAGTC
Found at i:1417889 original size:61 final size:60
Alignment explanation
Indices: 1417791--1417975 Score: 246
Period size: 61 Copynumber: 3.0 Consensus size: 60
1417781 CCTTTCAGTC
* *
1417791 TCCTTTCAAAGCCCACACAAGTTGGTGGCAACCTTTAGTCCTCAAAGAGCAGGATGCCTTTT
1 TCCTTTCAAA-ACCACACGAGTTGGTGGC-ACCTTTAGTCCTCAAAGAGCAGGATGCCTTTT
* * *
1417853 TCCTTTCAAAACCACACGAGTTGGTGACACCTTTTAGTCCTCAAAAAGCAGGGTGCCTTTT
1 TCCTTTCAAAACCACACGAGTTGGTGGCACC-TTTAGTCCTCAAAGAGCAGGATGCCTTTT
* * *
1417914 TCGTTTC-AAACCTACACGGGTTGGTGGCACCCTTTAGTCCTCAAAGAGTAGGATGCCTTTT
1 TCCTTTCAAAACC-ACACGAGTTGGTGGCA-CCTTTAGTCCTCAAAGAGCAGGATGCCTTTT
1417975 T
1 T
1417976 GAGTGGTACC
Statistics
Matches: 109, Mismatches: 11, Indels: 7
0.86 0.09 0.06
Matches are distributed among these distances:
60 8 0.07
61 89 0.82
62 12 0.11
ACGTcount: A:0.24, C:0.26, G:0.20, T:0.30
Consensus pattern (60 bp):
TCCTTTCAAAACCACACGAGTTGGTGGCACCTTTAGTCCTCAAAGAGCAGGATGCCTTTT
Found at i:1417991 original size:163 final size:161
Alignment explanation
Indices: 1417645--1418055 Score: 479
Period size: 163 Copynumber: 2.5 Consensus size: 161
1417635 ACTCCCGCAT
1417645 AAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGAG
1 AAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAA-CCCACACGAG
* * *
1417710 TTTGTGGCACCCTTTAGTCCTCAAAGAGCAAGATGCCTTTTTCCTTTCAACGCCCACACGACTTG
65 TTGGTGGCACCCTTTAGTCCTCAAAAAGCAAGATGCCTTTTTCCTTTCAACACCCACACGACTTG
*
1417775 GTGGCACCTTTCAGTCTCCTTTCAAAGCCCACAC
130 GTGGCACCTTTCAG-CTCC-TTCAAAGACCACAC
* * *
1417809 AAGTTGGTGGCAACCTTTAGTCCTCAAAGAGCAGGATGCCTTTTTCCTTTCAAAACCACACGAGT
1 AAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAACCCACACGAGT
* * * * * * **
1417874 TGGTGACACCTTTTAGTCCTCAAAAAGCAGGGTGCCTTTTTCGTTTCAA-ACCTACACGGGTTGG
66 TGGTGGCACCCTTTAGTCCTCAAAAAGCAAGATGCCTTTTTCCTTTCAACACCCACACGACTTGG
** *
1417938 TGGCACCCTTT-AG-TCC-TCAAAGAGTAGGATGCC
131 TGGCA-CCTTTCAGCTCCTTCAAAGACCA-CA---C
*** * * *
1417971 TTTTTGAGTGGTACCCTTTAGTCCTCAAAGAGCAAGACGCCTTTTTCCTTTCAACGCCCACACGA
1 AAGTTG-GTGGCACCCTTTAGTCCTCAAAGAGCAGGACGCCTTTTTCCTTTCAA-ACCCACACGA
*
1418036 GTTGGTGGCACCCTTCAGTC
64 GTTGGTGGCACCCTTTAGTC
1418056 TCCTTTCAAA
Statistics
Matches: 210, Mismatches: 30, Indels: 14
0.83 0.12 0.06
Matches are distributed among these distances:
158 7 0.03
159 1 0.00
160 3 0.01
162 22 0.10
163 100 0.48
164 77 0.37
ACGTcount: A:0.23, C:0.28, G:0.20, T:0.28
Consensus pattern (161 bp):
AAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAACCCACACGAGT
TGGTGGCACCCTTTAGTCCTCAAAAAGCAAGATGCCTTTTTCCTTTCAACACCCACACGACTTGG
TGGCACCTTTCAGCTCCTTCAAAGACCACAC
Found at i:1417999 original size:41 final size:41
Alignment explanation
Indices: 1417937--1418016 Score: 124
Period size: 41 Copynumber: 2.0 Consensus size: 41
1417927 ACACGGGTTG
* * *
1417937 GTGGCACCCTTTAGTCCTCAAAGAGTAGGATGCCTTTTTGA
1 GTGGCACCCTTTAGTCCTCAAAGAGCAAGACGCCTTTTTGA
*
1417978 GTGGTACCCTTTAGTCCTCAAAGAGCAAGACGCCTTTTT
1 GTGGCACCCTTTAGTCCTCAAAGAGCAAGACGCCTTTTT
1418017 CCTTTCAACG
Statistics
Matches: 35, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
41 35 1.00
ACGTcount: A:0.23, C:0.24, G:0.23, T:0.31
Consensus pattern (41 bp):
GTGGCACCCTTTAGTCCTCAAAGAGCAAGACGCCTTTTTGA
Found at i:1418071 original size:40 final size:40
Alignment explanation
Indices: 1418016--1418095 Score: 133
Period size: 40 Copynumber: 2.0 Consensus size: 40
1418006 GACGCCTTTT
* *
1418016 TCCTTTCAACGCCCACACGAGTTGGTGGCACCCTTCAGTC
1 TCCTTTCAAAGCCCACACAAGTTGGTGGCACCCTTCAGTC
*
1418056 TCCTTTCAAAGCCCACACAAGTTGGTGGCACCCTTTAGTC
1 TCCTTTCAAAGCCCACACAAGTTGGTGGCACCCTTCAGTC
1418096 CTCAAAGAGC
Statistics
Matches: 37, Mismatches: 3, Indels: 0
0.93 0.08 0.00
Matches are distributed among these distances:
40 37 1.00
ACGTcount: A:0.20, C:0.35, G:0.19, T:0.26
Consensus pattern (40 bp):
TCCTTTCAAAGCCCACACAAGTTGGTGGCACCCTTCAGTC
Found at i:1418131 original size:62 final size:62
Alignment explanation
Indices: 1418056--1418242 Score: 209
Period size: 62 Copynumber: 3.0 Consensus size: 62
1418046 CCCTTCAGTC
* * **
1418056 TCCTTTCAAAGCCCACACAAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGTTTTTT
1 TCCTTTCAAAGCCCACACGAGTTGGTGGCACCATTTAGTCCTCAAAGAGCAGGATGCCTTTT
* * * * *
1418118 TCCTTTCAAAGCCCACATGAGTTGGTGACACCTTTTAGTCCTCAAACAGCAGGGTGCCTTTT
1 TCCTTTCAAAGCCCACACGAGTTGGTGGCACCATTTAGTCCTCAAAGAGCAGGATGCCTTTT
* * * * *
1418180 TCGTTTCAAA-CCTACACGGGTTGGTGGC-CTCATTTTGTCCTCAAAGAGTAGGACT-CCTTTT
1 TCCTTTCAAAGCCCACACGAGTTGGTGGCAC-CATTTAGTCCTCAAAGAGCAGGA-TGCCTTTT
1418241 TC
1 TC
1418243 TTTAGTCCTC
Statistics
Matches: 105, Mismatches: 18, Indels: 5
0.82 0.14 0.04
Matches are distributed among these distances:
60 1 0.01
61 40 0.38
62 64 0.61
ACGTcount: A:0.22, C:0.26, G:0.20, T:0.32
Consensus pattern (62 bp):
TCCTTTCAAAGCCCACACGAGTTGGTGGCACCATTTAGTCCTCAAAGAGCAGGATGCCTTTT
Found at i:1418374 original size:154 final size:151
Alignment explanation
Indices: 1418088--1418399 Score: 335
Period size: 154 Copynumber: 2.0 Consensus size: 151
1418078 TGGTGGCACC
* ***
1418088 CTTTAGTCCTCAAAGAGCAGGATGTTTTTTTCCTTTCAAAGCCCACATGAGTTGGTGACACCTTT
1 CTTTAGTCCTCAAAGAGCACGACCCTTTTTT-CTTTCAAAGCCCACATGAGTTGGTGACACCTTT
* * *
1418153 TAGTCCTCAAACAGCAGGGTGCCTTTTTCGTTTCAAACCTACACGGGTTGGTGGCCTCATTTTGT
65 TAGTCCTCAAACAGCA--GTGCCTTTTTCCTTTCAAACCTACACGAGTTGGTGGCCTCATTTAGT
* *
1418218 CCTCAAAGAGTAGGACTCCTTTTT
128 CCTCAAAGAGCAAGACTCCTTTTT
* * * *
1418242 CTTTAGTCCTCAAAGAGCACGACCCCTTTTTT-TTTCAAAGCCTACATGGGTTTGTGGCACCTTT
1 CTTTAGTCCTCAAAGAGCACGA-CCCTTTTTTCTTTCAAAGCCCACATGAGTTGGTGACACCTTT
* * * * *
1418306 TAGTTCTGAAAGAGCA-TGACCTATTTTTCCTTTCAAAGCAC-ACACGAGTTTGTGGCAC-CCTT
65 TAGTCCTCAAACAGCAGTG-CC--TTTTTCCTTTCAAA-C-CTACACGAGTTGGTGGC-CTCATT
*
1418368 TAGTCCTCAAAGAGCAAGATTCCTTTTT
124 TAGTCCTCAAAGAGCAAGACTCCTTTTT
1418396 CTTT
1 CTTT
1418400 TCAACGCCCA
Statistics
Matches: 132, Mismatches: 19, Indels: 14
0.80 0.12 0.08
Matches are distributed among these distances:
150 2 0.02
151 2 0.02
153 54 0.41
154 66 0.50
155 8 0.06
ACGTcount: A:0.22, C:0.24, G:0.18, T:0.35
Consensus pattern (151 bp):
CTTTAGTCCTCAAAGAGCACGACCCTTTTTTCTTTCAAAGCCCACATGAGTTGGTGACACCTTTT
AGTCCTCAAACAGCAGTGCCTTTTTCCTTTCAAACCTACACGAGTTGGTGGCCTCATTTAGTCCT
CAAAGAGCAAGACTCCTTTTT
Found at i:1418468 original size:124 final size:122
Alignment explanation
Indices: 1418242--1418643 Score: 416
Period size: 124 Copynumber: 3.3 Consensus size: 122
1418232 ACTCCTTTTT
* ** * * * * *
1418242 CTTTAGTCCTCAAAGAGCACGACCCCTTTTT-TTTTCAAAGCCTACATGGGTTTGTGGCACCTTT
1 CTTTAGTCCTCAAAGAGCAGGATGCCTTTTTCTTTTCAAAGCCCACACGAGTTGGTGGCACCCTT
* * * * *
1418306 TAGTTCTGAAAGAGCATGACCTATTTTTCCTTTCAAAGCACACACGAGTTTGTGGCACC
66 TAGTCCTCAAAGAACAAGACGTATTTTT-CTTTCAAAGC-CACACGAGTTTGTGGCACC
* * *
1418365 CTTTAGTCCTCAAAGAGCAAGATTCCTTTTTCTTTTCAACGCCCACACGAGTTGGTGGCACCCTT
1 CTTTAGTCCTCAAAGAGCAGGATGCCTTTTTCTTTTCAAAGCCCACACGAGTTGGTGGCACCCTT
* * *
1418430 TAGCCCTCAAAGAACAAGACGTATTTCTCTTTTTAAAGCC-CACAGAAG-TTGATGGCACC
66 TAGTCCTCAAAGAACAAGACGTATTTTTC-TTTCAAAGCCACAC-G-AGTTTG-TGGCACC
* * * *
1418489 CTTTAGTCCCCAAAGAGCAGGATGCCTTTTTCCTTTCAAAGTCCGCACGAGTTGGTGGCACCCTT
1 CTTTAGTCCTCAAAGAGCAGGATGCCTTTTTCTTTTCAAAGCCCACACGAGTTGGTGGCACCCTT
* * ** * *
1418554 CAGTCCTCAAA-AATCAAGATGCCTTTTTGCTTTCAAAGCCAACACTAGTTAGTGGCACC
66 TAGTCCTCAAAGAA-CAAGACGTATTTTT-CTTTCAAAGCC-ACACGAGTTTGTGGCACC
* *
1418613 CTTTAGTCTTCAAAGAGTAGGATGCCTTTTT
1 CTTTAGTCCTCAAAGAGCAGGATGCCTTTTT
1418644 GAGTGGTACC
Statistics
Matches: 233, Mismatches: 36, Indels: 19
0.81 0.12 0.07
Matches are distributed among these distances:
122 3 0.01
123 36 0.15
124 188 0.81
125 3 0.01
126 3 0.01
ACGTcount: A:0.25, C:0.26, G:0.18, T:0.31
Consensus pattern (122 bp):
CTTTAGTCCTCAAAGAGCAGGATGCCTTTTTCTTTTCAAAGCCCACACGAGTTGGTGGCACCCTT
TAGTCCTCAAAGAACAAGACGTATTTTTCTTTCAAAGCCACACGAGTTTGTGGCACC
Found at i:1418644 original size:62 final size:61
Alignment explanation
Indices: 1418242--1418643 Score: 355
Period size: 62 Copynumber: 6.5 Consensus size: 61
1418232 ACTCCTTTTT
* ** * * * * *
1418242 CTTTAGTCCTCAAAGAGCACGACCCCTTTTTTTTTCAAAGCCTACATGGGTTTGTGGCACC
1 CTTTAGTCCTCAAAGAGCAAGATGCCTTTTTCTTTCAAAGCCAACACGAGTTGGTGGCACC
* * * * *
1418303 TTTTAGTTCTGAAAGAGCATGA--CCTATTTTTCCTTTCAAAG-CACACACGAGTTTGTGGCACC
1 CTTTAGTCCTCAAAGAGCAAGATGCC--TTTTT-CTTTCAAAGCCA-ACACGAGTTGGTGGCACC
* * *
1418365 CTTTAGTCCTCAAAGAGCAAGATTCCTTTTTCTTTTCAACGCCCACACGAGTTGGTGGCACC
1 CTTTAGTCCTCAAAGAGCAAGATGCCTTTTTC-TTTCAAAGCCAACACGAGTTGGTGGCACC
* * * ** * * * *
1418427 CTTTAGCCCTCAAAGAACAAGACGTATTTCTCTTTTTAAAGCCCACA-GAAGTTGATGGCACC
1 CTTTAGTCCTCAAAGAGCAAGATGCCTTTTTC-TTTCAAAGCCAACACG-AGTTGGTGGCACC
* * *
1418489 CTTTAGTCCCCAAAGAGCAGGATGCCTTTTTCCTTTCAAAGTCC-GCACGAGTTGGTGGCACC
1 CTTTAGTCCTCAAAGAGCAAGATGCCTTTTT-CTTTCAAAG-CCAACACGAGTTGGTGGCACC
* * * * *
1418551 CTTCAGTCCTCAAAAATCAAGATGCCTTTTTGCTTTCAAAGCCAACACTAGTTAGTGGCACC
1 CTTTAGTCCTCAAAGAGCAAGATGCCTTTTT-CTTTCAAAGCCAACACGAGTTGGTGGCACC
* * *
1418613 CTTTAGTCTTCAAAGAGTAGGATGCCTTTTT
1 CTTTAGTCCTCAAAGAGCAAGATGCCTTTTT
1418644 GAGTGGTACC
Statistics
Matches: 277, Mismatches: 51, Indels: 25
0.78 0.14 0.07
Matches are distributed among these distances:
59 2 0.01
61 28 0.10
62 240 0.87
63 5 0.02
64 2 0.01
ACGTcount: A:0.25, C:0.26, G:0.18, T:0.31
Consensus pattern (61 bp):
CTTTAGTCCTCAAAGAGCAAGATGCCTTTTTCTTTCAAAGCCAACACGAGTTGGTGGCACC
Found at i:1418649 original size:41 final size:41
Alignment explanation
Indices: 1418604--1418684 Score: 117
Period size: 41 Copynumber: 2.0 Consensus size: 41
1418594 AACACTAGTT
* * * *
1418604 AGTGGCACCCTTTAGTCTTCAAAGAGTAGGATGCCTTTTTG
1 AGTGGCACCCTTTAGTCCTCAAAGAGCAAGACGCCTTTTTG
*
1418645 AGTGGTACCCTTTAGTCCTCAAAGAGCAAGACGCCTTTTT
1 AGTGGCACCCTTTAGTCCTCAAAGAGCAAGACGCCTTTTT
1418685 CCTTTCAATG
Statistics
Matches: 35, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
41 35 1.00
ACGTcount: A:0.23, C:0.22, G:0.22, T:0.32
Consensus pattern (41 bp):
AGTGGCACCCTTTAGTCCTCAAAGAGCAAGACGCCTTTTTG
Found at i:1418739 original size:40 final size:40
Alignment explanation
Indices: 1418684--1418763 Score: 133
Period size: 40 Copynumber: 2.0 Consensus size: 40
1418674 GACGCCTTTT
* *
1418684 TCCTTTCAATGCCCACACGAGTTGGTGGCACCCTTCAGTC
1 TCCTTTCAAAGCCCACACAAGTTGGTGGCACCCTTCAGTC
*
1418724 TCCTTTCAAAGCCCACACAAGTTGGTGGCACCCTTTAGTC
1 TCCTTTCAAAGCCCACACAAGTTGGTGGCACCCTTCAGTC
1418764 CTCAAAGAGC
Statistics
Matches: 37, Mismatches: 3, Indels: 0
0.93 0.08 0.00
Matches are distributed among these distances:
40 37 1.00
ACGTcount: A:0.20, C:0.34, G:0.19, T:0.28
Consensus pattern (40 bp):
TCCTTTCAAAGCCCACACAAGTTGGTGGCACCCTTCAGTC
Found at i:1418799 original size:62 final size:62
Alignment explanation
Indices: 1418724--1418909 Score: 214
Period size: 62 Copynumber: 3.0 Consensus size: 62
1418714 CCCTTCAGTC
* *
1418724 TCCTTTCAAAGCCCACACAAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCTTTTT
1 TCCTTTCAAAGCCCACACGAGTTGGTGGCACCATTTAGTCCTCAAAGAGCAGGATGCTTTTT
* * * * * *
1418786 TCCTTTCAAAGCCCACATGAGTTGGTGACACCTTTTAGTCCTCAAAAAGCAGGGTGCCTTTT
1 TCCTTTCAAAGCCCACACGAGTTGGTGGCACCATTTAGTCCTCAAAGAGCAGGATGCTTTTT
* * * * * *
1418848 TCGTTTCAAA-CCTACACGGGTTGGTGGC-CTCATTTTGTCCTCAAAGAGTAGGACTCCTTTTT
1 TCCTTTCAAAGCCCACACGAGTTGGTGGCAC-CATTTAGTCCTCAAAGAGCAGGA-TGCTTTTT
1418910 CTTTAGTCCT
Statistics
Matches: 103, Mismatches: 19, Indels: 4
0.82 0.15 0.03
Matches are distributed among these distances:
60 1 0.01
61 32 0.31
62 70 0.68
ACGTcount: A:0.23, C:0.26, G:0.20, T:0.32
Consensus pattern (62 bp):
TCCTTTCAAAGCCCACACGAGTTGGTGGCACCATTTAGTCCTCAAAGAGCAGGATGCTTTTT
Found at i:1418989 original size:62 final size:62
Alignment explanation
Indices: 1418910--1419103 Score: 210
Period size: 62 Copynumber: 3.1 Consensus size: 62
1418900 ACTCCTTTTT
* ** *
1418910 CTTTAGTCCTCAAAGAGCACGACCCCTTTTTTATTTCAAAGCCTACACGGGGTTGTGGCACC
1 CTTTAGTCCTCAAAGAGCAAGACCCCTTTTTCCTTTCAAAGCCCACACGGGGTTGTGGCACC
* * * ** * * **
1418972 CTTTAGTTCTGAAAGAGCATGACCTATTTTTCCTTTCAAAGCCCACACGAGTTTGTGTTACC
1 CTTTAGTCCTCAAAGAGCAAGACCCCTTTTTCCTTTCAAAGCCCACACGGGGTTGTGGCACC
** * *
1419034 CTTTAGTCCTCAAAGAGCAAGATTCCTTTTTCCTTTCAACGCCCACAC-GTGTTGCTGGCACC
1 CTTTAGTCCTCAAAGAGCAAGACCCCTTTTTCCTTTCAAAGCCCACACGGGGTTG-TGGCACC
*
1419096 CTTCAGTC
1 CTTTAGTC
1419104 TCCTTTCAAA
Statistics
Matches: 105, Mismatches: 26, Indels: 2
0.79 0.20 0.02
Matches are distributed among these distances:
61 3 0.03
62 102 0.97
ACGTcount: A:0.22, C:0.29, G:0.17, T:0.32
Consensus pattern (62 bp):
CTTTAGTCCTCAAAGAGCAAGACCCCTTTTTCCTTTCAAAGCCCACACGGGGTTGTGGCACC
Found at i:1419119 original size:40 final size:40
Alignment explanation
Indices: 1419064--1419143 Score: 115
Period size: 40 Copynumber: 2.0 Consensus size: 40
1419054 GATTCCTTTT
* **
1419064 TCCTTTCAACGCCCACACGTGTTGCTGGCACCCTTCAGTC
1 TCCTTTCAAAGCCCACACAAGTTGCTGGCACCCTTCAGTC
* *
1419104 TCCTTTCAAAGCCCACACAAGTTGGTGGCACCCTTTAGTC
1 TCCTTTCAAAGCCCACACAAGTTGCTGGCACCCTTCAGTC
1419144 CTTAAAAACC
Statistics
Matches: 35, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
40 35 1.00
ACGTcount: A:0.19, C:0.36, G:0.17, T:0.28
Consensus pattern (40 bp):
TCCTTTCAAAGCCCACACAAGTTGCTGGCACCCTTCAGTC
Found at i:1419289 original size:62 final size:62
Alignment explanation
Indices: 1419104--1419475 Score: 435
Period size: 62 Copynumber: 6.0 Consensus size: 62
1419094 CCCTTCAGTC
* * * *
1419104 TCCTTTCAAAGCCCACACAAGTTGGTGGCACCCTTTAGTCCTTAAAAACCAGGATGCCTTTT
1 TCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGTCCTCAAAAAGCAGGACGCCTTTT
* * * * * * * * * * *
1419166 TCTTTTAAAAACCCACATGGGTTGGTGG-TCCATTTTGTCCTCAAAGAGCAAGACACCTTTT
1 TCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGTCCTCAAAAAGCAGGACGCCTTTT
* * * * * **
1419227 TCTTTTCAAAGCCCACACGTGTTGCTGGTACCCTTTAGTCCTCAAAAAGCAAGACGTATTTT
1 TCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGTCCTCAAAAAGCAGGACGCCTTTT
* * * *
1419289 TCCTTTCAAAGCCCATA-GAAGTTGGTGGCACCCTTTTGTCCTCAAAAAGTAGGATGCCTTTT
1 TCCTTTCAAAGCCCACACG-AGTTGGTGGCACCCTTTAGTCCTCAAAAAGCAGGACGCCTTTT
*
1419351 TCCTTTCAAAGCCCGA-ACGAGTTGGTGGCACCCTTTAGTCCTCAAAAAGCAGGATGCCTTTT
1 TCCTTTCAAAGCCC-ACACGAGTTGGTGGCACCCTTTAGTCCTCAAAAAGCAGGACGCCTTTT
* * *
1419413 TTCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTT
1 TCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGTCCTCAAAAAGCAGGACGCCTTTT
1419475 T
1 T
1419476 GAGTGGCACC
Statistics
Matches: 263, Mismatches: 42, Indels: 10
0.83 0.13 0.03
Matches are distributed among these distances:
61 49 0.19
62 212 0.81
63 2 0.01
ACGTcount: A:0.25, C:0.26, G:0.19, T:0.31
Consensus pattern (62 bp):
TCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGTCCTCAAAAAGCAGGACGCCTTTT
Found at i:1419514 original size:41 final size:41
Alignment explanation
Indices: 1419437--1419516 Score: 115
Period size: 41 Copynumber: 2.0 Consensus size: 41
1419427 ACACGAGTTG
* * * **
1419437 GTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTTTGA
1 GTGGCACCCGTTACTCCTCAAAGAGCAAGACACCTTTTTGA
1419478 GTGGCACCCGTTACTCCTCAAAGAGCAAGACACCTTTTT
1 GTGGCACCCGTTACTCCTCAAAGAGCAAGACACCTTTTT
1419517 CCTTTCAAAG
Statistics
Matches: 34, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
41 34 1.00
ACGTcount: A:0.24, C:0.28, G:0.21, T:0.28
Consensus pattern (41 bp):
GTGGCACCCGTTACTCCTCAAAGAGCAAGACACCTTTTTGA
Found at i:1419575 original size:102 final size:103
Alignment explanation
Indices: 1419375--1419575 Score: 287
Period size: 103 Copynumber: 2.0 Consensus size: 103
1419365 GAACGAGTTG
* * * ** *
1419375 GTGGCACCCTTTAGTCCTCAAAAAGCAGGATGCCTTTTTTCTTTCAAAGCCCACACGAGTTGGTG
1 GTGGCACCCGTTACTCCTCAAAAAGCAAGACACCTTTTTCCTTTCAAAGCCCACACGAGTTGGTG
* * **
1419440 GCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTTTGA
66 GAACCCTTTAGTCCTCAAAGAGCAAGACACCTTTTTGA
*
1419478 GTGGCACCCGTTACTCCTCAAAGAGCAAGACACCTTTTTCCTTTCAAAGCCCACAC-AGTTGGTG
1 GTGGCACCCGTTACTCCTCAAAAAGCAAGACACCTTTTTCCTTTCAAAGCCCACACGAGTTGGTG
*
1419542 GAACCCTTTAGTCCTCTAAGAGCAAGACACCTTT
66 GAACCCTTTAGTCCTCAAAGAGCAAGACACCTTT
1419576 CTCCTTTCGA
Statistics
Matches: 86, Mismatches: 12, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
102 37 0.43
103 49 0.57
ACGTcount: A:0.25, C:0.28, G:0.19, T:0.27
Consensus pattern (103 bp):
GTGGCACCCGTTACTCCTCAAAAAGCAAGACACCTTTTTCCTTTCAAAGCCCACACGAGTTGGTG
GAACCCTTTAGTCCTCAAAGAGCAAGACACCTTTTTGA
Found at i:1419633 original size:62 final size:62
Alignment explanation
Indices: 1419478--1419802 Score: 409
Period size: 62 Copynumber: 5.3 Consensus size: 62
1419468 GCCTTTTTGA
* *
1419478 GTGGCACCCGTTACTCCTCAAAGAGCAAGACACCTTTTTCCTTTCAAAGCCCACA-CAGTTG
1 GTGGCACCCTTTAGTCCTCAAAGAGCAAGACACCTTTTTCCTTTCAAAGCCCACACCAGTTG
* * * * * *
1419539 GTGGAACCCTTTAGTCCTCTAAGAGCAAGACACCTTTCTCCTTTCGAAGCCTACCCCAGTTG
1 GTGGCACCCTTTAGTCCTCAAAGAGCAAGACACCTTTTTCCTTTCAAAGCCCACACCAGTTG
* * * * * *
1419601 CTAGCACCCTTTAGTCCTCGAAGAGTAGGACACCTTTTTCCTTTCAAAGCCCACACGAGTTG
1 GTGGCACCCTTTAGTCCTCAAAGAGCAAGACACCTTTTTCCTTTCAAAGCCCACACCAGTTG
** ** * *
1419663 GTGGCACCCTTTAGTCCTCAAAGAGCGGGATGCCTTTTTCCTTTCAAAGCCCACACGAGTTT
1 GTGGCACCCTTTAGTCCTCAAAGAGCAAGACACCTTTTTCCTTTCAAAGCCCACACCAGTTG
** * *
1419725 GTGGCACCCTTTAGTCCTCAAAGAGCAAGATGCCTTTTTCCTTTCAACGCCCACACGAGTTG
1 GTGGCACCCTTTAGTCCTCAAAGAGCAAGACACCTTTTTCCTTTCAAAGCCCACACCAGTTG
* *
1419787 ATGGAACCCTTTAGTC
1 GTGGCACCCTTTAGTC
1419803 TCCTTTTAAA
Statistics
Matches: 230, Mismatches: 33, Indels: 1
0.87 0.12 0.00
Matches are distributed among these distances:
61 47 0.20
62 183 0.80
ACGTcount: A:0.23, C:0.31, G:0.18, T:0.27
Consensus pattern (62 bp):
GTGGCACCCTTTAGTCCTCAAAGAGCAAGACACCTTTTTCCTTTCAAAGCCCACACCAGTTG
Found at i:1419660 original size:226 final size:227
Alignment explanation
Indices: 1419256--1419701 Score: 599
Period size: 226 Copynumber: 2.0 Consensus size: 227
1419246 TGTTGCTGGT
* * ** * *
1419256 ACCCTTTAGTCCTCAAAAAGCAAGACGTATTTTTCCTTTCAAAGCCCATAGAAGTTGGTGGCACC
1 ACCCGTTACTCCTCAAAAAGCAAGACACATTTTTCCTTTCAAAGCCCACAGAAGTTGGTGGAACC
* * * ** * * * *
1419321 CTTTTGTCCTCAAAAAGTAGGATGCCTTTTTCCTTTCAAAGCCCGAACGAGTTGGTGGCACCCTT
66 CTTTAGTCCTCAAAAAGCAAGACACCTTTCTCCTTTCAAAGCCCGAACCAGTTGCTAGCACCCTT
** *
1419386 TAGTCCTCAAAAAGCAGGATGCCTTTTTTCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAG
131 TAGTCCTCAAAAAGCAGGACACCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAG
1419451 TCCTCAAAGAGCAGGATGCCTTTTTGAGTGGC
196 TCCTCAAAGAGCAGGATGCCTTTTTGAGTGGC
* * *
1419483 ACCCGTTACTCCTCAAAGAGCAAGACACCTTTTTCCTTTCAAAGCCCACA-CAGTTGGTGGAACC
1 ACCCGTTACTCCTCAAAAAGCAAGACACATTTTTCCTTTCAAAGCCCACAGAAGTTGGTGGAACC
* * * * *
1419547 CTTTAGTCCTCTAAGAGCAAGACACCTTTCTCCTTTCGAAG-CCTACCCCAGTTGCTAGCACCCT
66 CTTTAGTCCTCAAAAAGCAAGACACCTTTCTCCTTTCAAAGCCCGA-ACCAGTTGCTAGCACCCT
* * *
1419611 TTAGTCCTCGAAGAGTAGGACACCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTA
130 TTAGTCCTCAAAAAGCAGGACACCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTA
*
1419676 GTCCTCAAAGAGCGGGATGCCTTTTT
195 GTCCTCAAAGAGCAGGATGCCTTTTT
1419702 CCTTTCAAAG
Statistics
Matches: 188, Mismatches: 30, Indels: 3
0.85 0.14 0.01
Matches are distributed among these distances:
225 3 0.02
226 142 0.76
227 43 0.23
ACGTcount: A:0.24, C:0.28, G:0.19, T:0.28
Consensus pattern (227 bp):
ACCCGTTACTCCTCAAAAAGCAAGACACATTTTTCCTTTCAAAGCCCACAGAAGTTGGTGGAACC
CTTTAGTCCTCAAAAAGCAAGACACCTTTCTCCTTTCAAAGCCCGAACCAGTTGCTAGCACCCTT
TAGTCCTCAAAAAGCAGGACACCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAG
TCCTCAAAGAGCAGGATGCCTTTTTGAGTGGC
Found at i:1419807 original size:226 final size:225
Alignment explanation
Indices: 1419596--1420027 Score: 576
Period size: 226 Copynumber: 1.9 Consensus size: 225
1419586 AGCCTACCCC
* *
1419596 AGTTGCTAGCACCCTTTAGTCCTCGAAGAGTAGGACACCTTTTTCCTTTCAAAGCCCACACGAGT
1 AGTTGCTAGCACCCTTTAGTCCTCAAAGAGCAGGACACCTTTTTCCTTTCAAAGCCCACACGAGT
* * * * * * *
1419661 TGGTGGCACCCTTTAGTCCTCAAAGAGCGGGATGCCTTTTTCCTTTCAAAGCCCACACGAGTTTG
66 TCGTGGCACCATTTAGTCCTCAAAAAGCAGGATGCCTTTTTCATTTCAAAACCCACACGAGTTGG
* ** *
1419726 TGGCACCCTTTAGTCCTCAAAGAGCAAGATGCCTTTTTCCTTTCAACGCCCACACGAGTTGATGG
131 TGG-ACCATTTAGTCCTCAAAGAGCAAGACACCTTTTTCCTTTCAAAGCCCACACGAGTTGATGG
*
1419791 AACCCTTTAGTCTCCTTTTAAAACCCACACA
195 AACCCTTTAGTCTCCTTTCAAAACCCACACA
* * ** *
1419822 AGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTTTCCTTTCTAAGCCCACACGAGT
1 AGTTGCTAGCACCCTTTAGTCCTCAAAGAGCAGGACACCTTTTTCCTTTCAAAGCCCACACGAGT
* * *
1419887 TCGTGGCACCATTTAGTCCTTAAAAAGTAGGATTCCTTTTTCATTTCAAAACCCACACGAGTTGG
66 TCGTGGCACCATTTAGTCCTCAAAAAGCAGGATGCCTTTTTCATTTCAAAACCCACACGAGTTGG
* * * * * * * * *
1419952 TGGTCCATTTTGTCCTCCAATAGCAGGACACCTTTTTCTTTTCAAAGCCCACACGTGTTGTTGGT
131 TGGACCATTTAGTCCTCAAAGAGCAAGACACCTTTTTCCTTTCAAAGCCCACACGAGTTGATGGA
1420017 ACCCTTTAGTC
196 ACCCTTTAGTC
1420028 CTCAAAGAGC
Statistics
Matches: 176, Mismatches: 30, Indels: 1
0.85 0.14 0.00
Matches are distributed among these distances:
225 60 0.34
226 116 0.66
ACGTcount: A:0.23, C:0.28, G:0.18, T:0.31
Consensus pattern (225 bp):
AGTTGCTAGCACCCTTTAGTCCTCAAAGAGCAGGACACCTTTTTCCTTTCAAAGCCCACACGAGT
TCGTGGCACCATTTAGTCCTCAAAAAGCAGGATGCCTTTTTCATTTCAAAACCCACACGAGTTGG
TGGACCATTTAGTCCTCAAAGAGCAAGACACCTTTTTCCTTTCAAAGCCCACACGAGTTGATGGA
ACCCTTTAGTCTCCTTTCAAAACCCACACA
Found at i:1419842 original size:164 final size:164
Alignment explanation
Indices: 1419639--1419950 Score: 489
Period size: 164 Copynumber: 1.9 Consensus size: 164
1419629 GACACCTTTT
* * *
1419639 TCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCGGGATGCCTTTTTCC
1 TCCTTTCAAAACCCACACAAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTTTCC
* * * *
1419704 TTTCAAAGCCCACACGAGTTTGTGGCACCCTTTAGTCCTCAAAGAGCAAGATGCCTTTTTCCTTT
66 TTTCAAAGCCCACACGAGTTCGTGGCACCATTTAGTCCTCAAAAAGCAAGATGCCTTTTTCATTT
**
1419769 CAACGCCCACACGAGTTGATGGAACCCTTTAGTC
131 CAAAACCCACACGAGTTGATGGAACCCTTTAGTC
*
1419803 TCCTTTTAAAACCCACACAAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTTTCC
1 TCCTTTCAAAACCCACACAAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTTTCC
* * * * *
1419868 TTTCTAAGCCCACACGAGTTCGTGGCACCATTTAGTCCTTAAAAAGTAGGATTCCTTTTTCATTT
66 TTTCAAAGCCCACACGAGTTCGTGGCACCATTTAGTCCTCAAAAAGCAAGATGCCTTTTTCATTT
1419933 CAAAACCCACACGAGTTG
131 CAAAACCCACACGAGTTG
1419951 GTGGTCCATT
Statistics
Matches: 133, Mismatches: 15, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
164 133 1.00
ACGTcount: A:0.24, C:0.29, G:0.18, T:0.29
Consensus pattern (164 bp):
TCCTTTCAAAACCCACACAAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTTTCC
TTTCAAAGCCCACACGAGTTCGTGGCACCATTTAGTCCTCAAAAAGCAAGATGCCTTTTTCATTT
CAAAACCCACACGAGTTGATGGAACCCTTTAGTC
Found at i:1419879 original size:102 final size:102
Alignment explanation
Indices: 1419701--1419904 Score: 313
Period size: 102 Copynumber: 2.0 Consensus size: 102
1419691 GATGCCTTTT
* * *
1419701 TCCTTTCAAAGCCCACACGAGTTTGTGGCACCCTTTAGTCCTCAAAGAGCAAGATGCCTTTTTCC
1 TCCTTTCAAAACCCACACAAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAAGATGCCTTTTTCC
*
1419766 TTTCAACGCCCACACGAGTT-GATGGAACCCTTTAGTC
66 TTTCAACGCCCACACGAGTTCG-TGGAACCATTTAGTC
* *
1419803 TCCTTTTAAAACCCACACAAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTTTCC
1 TCCTTTCAAAACCCACACAAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAAGATGCCTTTTTCC
*
1419868 TTTCTAA-GCCCACACGAGTTCGTGGCACCATTTAGTC
66 TTTC-AACGCCCACACGAGTTCGTGGAACCATTTAGTC
1419905 CTTAAAAAGT
Statistics
Matches: 93, Mismatches: 7, Indels: 4
0.89 0.07 0.04
Matches are distributed among these distances:
102 90 0.97
103 3 0.03
ACGTcount: A:0.24, C:0.30, G:0.18, T:0.29
Consensus pattern (102 bp):
TCCTTTCAAAACCCACACAAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAAGATGCCTTTTTCC
TTTCAACGCCCACACGAGTTCGTGGAACCATTTAGTC
Found at i:1419902 original size:62 final size:62
Alignment explanation
Indices: 1419803--1420112 Score: 327
Period size: 62 Copynumber: 5.0 Consensus size: 62
1419793 CCCTTTAGTC
* * *
1419803 TCCTTTTAAAACCCACACAAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTT
1 TCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTT
* * * * * * *
1419865 TCCTTTCTAAGCCCACACGAGTTCGTGGCACCATTTAGTCCTTAAAAAGTAGGATTCCTTTT
1 TCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTT
* * * * * * * **
1419927 TCATTTCAAAACCCACACGAGTTGGTGG-TCCATTTTGTCCTCCAATAGCAGGACACCTTTT
1 TCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTT
* * * * * * **
1419988 TCTTTTCAAAGCCCACACGTGTTGTTGGTACCCTTTAGTCCTCAAAGAGCAAGACGTATTTT
1 TCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTT
* * *
1420050 TCCTTTCAATGCCCATA-GAAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGCATGCCTTTT
1 TCCTTTCAAAGCCCACACG-AGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTT
1420112 T
1 T
1420113 AAGTGGCACC
Statistics
Matches: 200, Mismatches: 46, Indels: 4
0.80 0.18 0.02
Matches are distributed among these distances:
61 50 0.25
62 150 0.75
ACGTcount: A:0.24, C:0.26, G:0.17, T:0.32
Consensus pattern (62 bp):
TCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTT
Found at i:1420050 original size:123 final size:124
Alignment explanation
Indices: 1419810--1420101 Score: 320
Period size: 123 Copynumber: 2.4 Consensus size: 124
1419800 GTCTCCTTTT
* ** *
1419810 AAAACCCACACAAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTTTCCTTTCTAA
1 AAAACCCACACAAGTTGGTGGCACCATTTAGTCCTCAAAGAGCAGGACACCTTTTTCCTTTCAAA
* * * * *
1419875 GCCCACACGAGTTCGTGGCACCATTTAGTCCTTAAAAAGTAGGATTCCTTTTTCATTTC
66 GCCCACACGAGTTCGTGGCACCATTTAGTCCTCAAAAAGCAAGAGTCATTTTTCATTTC
* * * * * *
1419934 AAAACCCACACGAGTTGGTGG-TCCATTTTGTCCTCCAATAGCAGGACACCTTTTTCTTTTCAAA
1 AAAACCCACACAAGTTGGTGGCACCATTTAGTCCTCAAAGAGCAGGACACCTTTTTCCTTTCAAA
* * * * *
1419998 GCCCACACGTGTT-GTTGGTACCCTTTAGTCCTCAAAGAGCAAGACGT-ATTTTTCCTTTC
66 GCCCACACGAGTTCG-TGGCACCATTTAGTCCTCAAAAAGCAAGA-GTCATTTTTCATTTC
** * * *
1420057 AATGCCCATAGAAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAG
1 AAAACCCACACAAGTTGGTGGCACCATTTAGTCCTCAAAGAGCAG
1420102 CATGCCTTTT
Statistics
Matches: 135, Mismatches: 30, Indels: 6
0.79 0.18 0.04
Matches are distributed among these distances:
122 1 0.01
123 95 0.70
124 39 0.29
ACGTcount: A:0.25, C:0.26, G:0.18, T:0.30
Consensus pattern (124 bp):
AAAACCCACACAAGTTGGTGGCACCATTTAGTCCTCAAAGAGCAGGACACCTTTTTCCTTTCAAA
GCCCACACGAGTTCGTGGCACCATTTAGTCCTCAAAAAGCAAGAGTCATTTTTCATTTC
Found at i:1420121 original size:226 final size:226
Alignment explanation
Indices: 1419889--1420338 Score: 562
Period size: 226 Copynumber: 2.0 Consensus size: 226
1419879 ACACGAGTTC
* * * **
1419889 GTGGCACCATTTAGTCCTTAAAAAGTAGGATTCCTTTTTCATTTCAAAACCCACACGAGTTGGTG
1 GTGGCACCATTTAGTCCTCAAAAAGCAAGACGCCTTTTTCATTTCAAAACCCACAC-AGTTGGTG
* * * * * * * * *
1419954 G-TCCATTTTGTCCTCCAATAGCAGGACACCTTTTTCTTTTCAAAGCCCACACGTGTTGTTGGTA
65 GCACCATTTAGTCCTCAAAGAGCAAGACACCTTTTTCATTTCAAAGCCCACACGAGTTGCTGGCA
** * *
1420018 CCCTTTAGTCCTCAAAGAGCAAGACGTATTTTTCCTTTCAATGCCCATA-GAAGTTGGTGGCACC
130 CCCTTTAGTCCTCAAAGAGCAAGACACATTTTTCCTTTCAAAGCCCACACG-AGTTGGTGGCACC
*
1420082 CTTTAGTCCTCAAAGAGCAGCATGCCTTTTTAA
194 CTTTAGTCCTCAAAGAGCAGCACGCCTTTTTAA
* * * * * *
1420115 GTGGCACCCTTTTGTCCTCAAAGAGCAAGACGCCTTTTTCCTTTCGAAGCCCACACAGTTGGTGG
1 GTGGCACCATTTAGTCCTCAAAAAGCAAGACGCCTTTTTCATTTCAAAACCCACACAGTTGGTGG
* *
1420180 CACCCTTTAGTCCTCAAAGAGCAAGACACCTTTTTCATTTCAAAGCCTACACGAGTTGCTGGCAC
66 CACCATTTAGTCCTCAAAGAGCAAGACACCTTTTTCATTTCAAAGCCCACACGAGTTGCTGGCAC
* * * * * *
1420245 CGTTTAGTCGTCGAAGAGTACGACACCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCT
131 CCTTTAGTCCTCAAAGAGCAAGACACATTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCT
*
1420310 TTAGTCCTCAAAGAGCAGGACGCCTTTTT
196 TTAGTCCTCAAAGAGCAGCACGCCTTTTT
1420339 TCTTTTCAAA
Statistics
Matches: 188, Mismatches: 34, Indels: 4
0.83 0.15 0.02
Matches are distributed among these distances:
225 9 0.05
226 178 0.95
227 1 0.01
ACGTcount: A:0.24, C:0.27, G:0.19, T:0.30
Consensus pattern (226 bp):
GTGGCACCATTTAGTCCTCAAAAAGCAAGACGCCTTTTTCATTTCAAAACCCACACAGTTGGTGG
CACCATTTAGTCCTCAAAGAGCAAGACACCTTTTTCATTTCAAAGCCCACACGAGTTGCTGGCAC
CCTTTAGTCCTCAAAGAGCAAGACACATTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCT
TTAGTCCTCAAAGAGCAGCACGCCTTTTTAA
Found at i:1420150 original size:41 final size:41
Alignment explanation
Indices: 1420074--1420153 Score: 126
Period size: 41 Copynumber: 2.0 Consensus size: 41
1420064 ATAGAAGTTG
*
1420074 GTGGCACCCTTTAGTCCTCAAAGAGCAGCATGCCTTTTTAA
1 GTGGCACCCTTTAGTCCTCAAAGAGCAGCACGCCTTTTTAA
*
1420115 GTGGCACCCTTTTGTCCTCAAAGAGCAAG-ACGCCTTTTT
1 GTGGCACCCTTTAGTCCTCAAAGAGC-AGCACGCCTTTTT
1420154 CCTTTCGAAG
Statistics
Matches: 36, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
41 34 0.94
42 2 0.06
ACGTcount: A:0.23, C:0.28, G:0.20, T:0.30
Consensus pattern (41 bp):
GTGGCACCCTTTAGTCCTCAAAGAGCAGCACGCCTTTTTAA
Found at i:1420245 original size:164 final size:165
Alignment explanation
Indices: 1419959--1420262 Score: 405
Period size: 164 Copynumber: 1.8 Consensus size: 165
1419949 TGGTGGTCCA
* * * * * * *
1419959 TTTTGTCCTCCAATAGCAGGACACCTTTTTCTTTTCAAAGCCCACACGTGTTGTTGGTACCCTTT
1 TTTTGTCCTCAAAGAGCAAGACACCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTT
** * * * *
1420024 AGTCCTCAAAGAGCAAGACGTATTTTTCCTTTCAATGCCCATAGAAGTTGGTGGCACCCTTTAGT
66 AGTCCTCAAAGAGCAAGACACATTTTTCATTTCAAAGCCCACAGAAGTTGCTGGCACCCTTTAGT
1420089 CCTCAAAGAGCAGCATGCCTTTTTAAGTGGCACCC
131 CCTCAAAGAGCAGCATGCCTTTTTAAGTGGCACCC
* *
1420124 TTTTGTCCTCAAAGAGCAAGACGCCTTTTTCCTTTCGAAGCCCACAC-AGTTGGTGGCACCCTTT
1 TTTTGTCCTCAAAGAGCAAGACACCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTT
* * *
1420188 AGTCCTCAAAGAGCAAGACACCTTTTTCATTTCAAAGCCTACACG-AGTTGCTGGCACCGTTTAG
66 AGTCCTCAAAGAGCAAGACACATTTTTCATTTCAAAGCCCACA-GAAGTTGCTGGCACCCTTTAG
* *
1420252 TCGTCGAAGAG
130 TCCTCAAAGAG
1420263 TACGACACCT
Statistics
Matches: 118, Mismatches: 20, Indels: 3
0.84 0.14 0.02
Matches are distributed among these distances:
164 76 0.64
165 42 0.36
ACGTcount: A:0.24, C:0.27, G:0.19, T:0.30
Consensus pattern (165 bp):
TTTTGTCCTCAAAGAGCAAGACACCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTT
AGTCCTCAAAGAGCAAGACACATTTTTCATTTCAAAGCCCACAGAAGTTGCTGGCACCCTTTAGT
CCTCAAAGAGCAGCATGCCTTTTTAAGTGGCACCC
Found at i:1420270 original size:62 final size:62
Alignment explanation
Indices: 1420115--1420502 Score: 562
Period size: 62 Copynumber: 6.3 Consensus size: 62
1420105 GCCTTTTTAA
* *
1420115 GTGGCACCCTTTTGTCCTCAAAGAGCAAGACGCCTTTTTCCTTTCGAAGCCCACAC-AGTTG
1 GTGGCACCCTTTAGTCCTCAAAGAGCAAGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTG
* * *
1420176 GTGGCACCCTTTAGTCCTCAAAGAGCAAGACACCTTTTTCATTTCAAAGCCTACACGAGTTG
1 GTGGCACCCTTTAGTCCTCAAAGAGCAAGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTG
* * * * * * *
1420238 CTGGCACCGTTTAGTCGTCGAAGAGTACGACACCTTTTTCCTTTCAAAGCCCACACGAGTTG
1 GTGGCACCCTTTAGTCCTCAAAGAGCAAGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTG
* * *
1420300 GTGGCACCCTTTAGTCCTCAAAGAGCAGGACGCCTTTTTTCTTTTCAAAGCCCACACAAGTTG
1 GTGGCACCCTTTAGTCCTCAAAGAGCAAGACGCC-TTTTTCCTTTCAAAGCCCACACGAGTTG
** *
1420363 GTGGCACCCTTTAGTCCTCAAAGAGCGGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTT
1 GTGGCACCCTTTAGTCCTCAAAGAGCAAGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTG
* * *
1420425 GTGGCACCCTTTATTCCTCAAAGAGCAAGATGCCTTTTTCCTTTCAACGCCCACACGAGTTG
1 GTGGCACCCTTTAGTCCTCAAAGAGCAAGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTG
*
1420487 ATGGCACCCTTTAGTC
1 GTGGCACCCTTTAGTC
1420503 TCCTTTCAAA
Statistics
Matches: 291, Mismatches: 34, Indels: 3
0.89 0.10 0.01
Matches are distributed among these distances:
61 51 0.18
62 181 0.62
63 59 0.20
ACGTcount: A:0.23, C:0.30, G:0.19, T:0.28
Consensus pattern (62 bp):
GTGGCACCCTTTAGTCCTCAAAGAGCAAGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTG
Found at i:1420387 original size:125 final size:124
Alignment explanation
Indices: 1420115--1420502 Score: 562
Period size: 125 Copynumber: 3.1 Consensus size: 124
1420105 GCCTTTTTAA
* *
1420115 GTGGCACCCTTTTGTCCTCAAAGAGCAAGACGCCTTTTTCCTTTCGAAGCCCACAC-AGTTGGTG
1 GTGGCACCCTTTAGTCCTCAAAGAGCAAGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTG
* *
1420179 GCACCCTTTAGTCCTCAAAGAGCAAGACACCTTTTTCATTTCAAAGCCTACACGAGTTG
66 GCACCCTTTAGTCCTCAAAGAGCAAGACGCCTTTTTCATTTCAAAGCCCACACGAGTTG
* * * * * * *
1420238 CTGGCACCGTTTAGTCGTCGAAGAGTACGACACCTTTTTCCTTTCAAAGCCCACACGAGTTGGTG
1 GTGGCACCCTTTAGTCCTCAAAGAGCAAGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTG
* * *
1420303 GCACCCTTTAGTCCTCAAAGAGCAGGACGCCTTTTTTCTTTTCAAAGCCCACACAAGTTG
66 GCACCCTTTAGTCCTCAAAGAGCAAGACGCC-TTTTTCATTTCAAAGCCCACACGAGTTG
** *
1420363 GTGGCACCCTTTAGTCCTCAAAGAGCGGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTTGTG
1 GTGGCACCCTTTAGTCCTCAAAGAGCAAGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTG
* * * *
1420428 GCACCCTTTATTCCTCAAAGAGCAAGATGCCTTTTTCCTTTCAACGCCCACACGAGTTG
66 GCACCCTTTAGTCCTCAAAGAGCAAGACGCCTTTTTCATTTCAAAGCCCACACGAGTTG
*
1420487 ATGGCACCCTTTAGTC
1 GTGGCACCCTTTAGTC
1420503 TCCTTTCAAA
Statistics
Matches: 233, Mismatches: 30, Indels: 3
0.88 0.11 0.01
Matches are distributed among these distances:
123 47 0.20
124 77 0.33
125 109 0.47
ACGTcount: A:0.23, C:0.30, G:0.19, T:0.28
Consensus pattern (124 bp):
GTGGCACCCTTTAGTCCTCAAAGAGCAAGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTG
GCACCCTTTAGTCCTCAAAGAGCAAGACGCCTTTTTCATTTCAAAGCCCACACGAGTTG
Found at i:1420432 original size:187 final size:185
Alignment explanation
Indices: 1420115--1420502 Score: 571
Period size: 187 Copynumber: 2.1 Consensus size: 185
1420105 GCCTTTTTAA
* *
1420115 GTGGCACCCTTTTGTCCTCAAAGAGCAAGACGCCTTTTTCCTTTCGAAGCCCACACAGTTGGTGG
1 GTGGCACCCTTTAGTCCTCAAAGAGCAAGACGCCTTTTTCCTTTCAAAGCCCACACAGTTGGTGG
*
1420180 CACCCTTTAGTCCTCAAAGAGCAAGACACCTTTTTCATTTCAAAGCCTACACGAGTTGCTGGCAC
66 CACCCTTTAGTCCTCAAAGAGCAAGACACCTTTTTCATTTCAAAGCCCACACGAGTTGCTGGCAC
* * * * *
1420245 CGTTTAGTCGTCGAAGAGTACGACACCTTTTTCCTTTCAAAGCCCACACGAGTTG
131 CCTTTAGTCCTCAAAGAGCAAGACACCTTTTTCCTTTCAAAGCCCACACGAGTTG
* *
1420300 GTGGCACCCTTTAGTCCTCAAAGAGCAGGACGCCTTTTTTCTTTTCAAAGCCCACACAAGTTGGT
1 GTGGCACCCTTTAGTCCTCAAAGAGCAAGACGCC-TTTTTCCTTTCAAAGCCCACAC-AGTTGGT
** * *
1420365 GGCACCCTTTAGTCCTCAAAGAGCGGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTTG-TGG
64 GGCACCCTTTAGTCCTCAAAGAGCAAGACACCTTTTTCATTTCAAAGCCCACACGAG-TTGCTGG
* ** *
1420429 CACCCTTTATTCCTCAAAGAGCAAGATGCCTTTTTCCTTTCAACGCCCACACGAGTTG
128 CACCCTTTAGTCCTCAAAGAGCAAGACACCTTTTTCCTTTCAAAGCCCACACGAGTTG
*
1420487 ATGGCACCCTTTAGTC
1 GTGGCACCCTTTAGTC
1420503 TCCTTTCAAA
Statistics
Matches: 181, Mismatches: 19, Indels: 4
0.89 0.09 0.02
Matches are distributed among these distances:
185 32 0.18
186 20 0.11
187 126 0.70
188 3 0.02
ACGTcount: A:0.23, C:0.30, G:0.19, T:0.28
Consensus pattern (185 bp):
GTGGCACCCTTTAGTCCTCAAAGAGCAAGACGCCTTTTTCCTTTCAAAGCCCACACAGTTGGTGG
CACCCTTTAGTCCTCAAAGAGCAAGACACCTTTTTCATTTCAAAGCCCACACGAGTTGCTGGCAC
CCTTTAGTCCTCAAAGAGCAAGACACCTTTTTCCTTTCAAAGCCCACACGAGTTG
Found at i:1420509 original size:40 final size:40
Alignment explanation
Indices: 1420463--1420542 Score: 124
Period size: 40 Copynumber: 2.0 Consensus size: 40
1420453 GATGCCTTTT
** *
1420463 TCCTTTCAACGCCCACACGAGTTGATGGCACCCTTTAGTC
1 TCCTTTCAAAACCCACACAAGTTGATGGCACCCTTTAGTC
*
1420503 TCCTTTCAAAACCCACACAAGTTGGTGGCACCCTTTAGTC
1 TCCTTTCAAAACCCACACAAGTTGATGGCACCCTTTAGTC
1420543 CTCAAAAAGC
Statistics
Matches: 36, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
40 36 1.00
ACGTcount: A:0.23, C:0.34, G:0.16, T:0.28
Consensus pattern (40 bp):
TCCTTTCAAAACCCACACAAGTTGATGGCACCCTTTAGTC
Found at i:1420579 original size:102 final size:102
Alignment explanation
Indices: 1420401--1420604 Score: 297
Period size: 102 Copynumber: 2.0 Consensus size: 102
1420391 GACGCCTTTT
* * * * *
1420401 TCCTTTCAAAGCCCACACGAGTTTGTGGCACCCTTTATTCCTCAAAGAGCAAGATGCCTTTTTCC
1 TCCTTTCAAAACCCACACAAGTTGGTGGCACCCTTTAGTCCTCAAAAAGCAAGATGCCTTTTTCC
* *
1420466 TTTCAACGCCCACACGAGTT-GATGGCACCCTTTAGTC
66 TTTCAACGCCCACACGAGTTCG-TGGCAACATTTAGTC
1420503 TCCTTTCAAAACCCACACAAGTTGGTGGCACCCTTTAGTCCTCAAAAAGC-AGCATGCCTTTTTC
1 TCCTTTCAAAACCCACACAAGTTGGTGGCACCCTTTAGTCCTCAAAAAGCAAG-ATGCCTTTTTC
1420567 CTTTCTAA-GCCCACACGAGTTCGTGGCAACATTTAGTC
65 CTTTC-AACGCCCACACGAGTTCGTGGCAACATTTAGTC
1420605 CTTAAAAAGC
Statistics
Matches: 92, Mismatches: 7, Indels: 6
0.88 0.07 0.06
Matches are distributed among these distances:
101 2 0.02
102 87 0.95
103 3 0.03
ACGTcount: A:0.24, C:0.31, G:0.16, T:0.29
Consensus pattern (102 bp):
TCCTTTCAAAACCCACACAAGTTGGTGGCACCCTTTAGTCCTCAAAAAGCAAGATGCCTTTTTCC
TTTCAACGCCCACACGAGTTCGTGGCAACATTTAGTC
Found at i:1420602 original size:62 final size:62
Alignment explanation
Indices: 1420503--1420936 Score: 530
Period size: 62 Copynumber: 7.0 Consensus size: 62
1420493 CCCTTTAGTC
* * * *
1420503 TCCTTTCAAAACCCACACAAGTTGGTGGCACCCTTTAGTCCTCAAAAAGCAGCATGCCTTTT
1 TCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTT
* * * * * * *
1420565 TCCTTTCTAAGCCCACACGAGTTCGTGGCAACATTTAGTCCTTAAAAAGCAGGATTCCTTTT
1 TCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTT
* * * * * * **
1420627 TCATTTCAAAACCCACACGAGTTGGTGG-TCCGTTTTGTCCTCAAAGTGCAGGACACCTTTT
1 TCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTT
* * * * * * **
1420688 TCTTTTCAAAGCCCACACGTGTTGTTGGCACCCTTTAGTCCTCAGAGAGCAAGACGTATTTT
1 TCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTT
* * *
1420750 TCCTTTCAAAGCCCATA-GAAGTTGGTGGCACCCTTTAGTTCTCAAAGAGAAGGATGCCTTTT
1 TCCTTTCAAAGCCCACACG-AGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTT
* *
1420812 TCCTTTCAAAGCCCGCACGAGTTGGTGGCACCCTTTAGTCCTCAAAAAGCAGGATGCCTTTT
1 TCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTT
* * *
1420874 TCCTTTCAAAGCCCACACGAATCGGTGGCACCCTTTAGTCCTCAAAGAGCAGCATGCCTTTT
1 TCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTT
1420936 T
1 T
1420937 AAGTGGCACC
Statistics
Matches: 313, Mismatches: 56, Indels: 6
0.83 0.15 0.02
Matches are distributed among these distances:
61 49 0.16
62 263 0.84
63 1 0.00
ACGTcount: A:0.24, C:0.27, G:0.18, T:0.30
Consensus pattern (62 bp):
TCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTT
Found at i:1420627 original size:164 final size:164
Alignment explanation
Indices: 1420342--1420650 Score: 465
Period size: 164 Copynumber: 1.9 Consensus size: 164
1420332 CCTTTTTTCT
* * * *
1420342 TTTCAAAGCCCACACAAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCGGGACGCCTTTTTCCTTT
1 TTTCAAAACCCACACAAGTTGGTGGCACCCTTTAGTCCTCAAAAAGCAGCACGCCTTTTTCCTTT
* * * * * *
1420407 CAAAGCCCACACGAGTTTGTGGCACCCTTTATTCCTCAAAGAGCAAGATGCCTTTTTCCTTTCAA
66 CAAAGCCCACACGAGTTCGTGGCAACATTTAGTCCTCAAAAAGCAAGATGCCTTTTTCATTTCAA
**
1420472 CGCCCACACGAGTTGATGGCACCCTTTAGTCTCC
131 AACCCACACGAGTTGATGGCACCCTTTAGTCTCC
*
1420506 TTTCAAAACCCACACAAGTTGGTGGCACCCTTTAGTCCTCAAAAAGCAGCATGCCTTTTTCCTTT
1 TTTCAAAACCCACACAAGTTGGTGGCACCCTTTAGTCCTCAAAAAGCAGCACGCCTTTTTCCTTT
* * * *
1420571 CTAAGCCCACACGAGTTCGTGGCAACATTTAGTCCTTAAAAAGCAGGATTCCTTTTTCATTTCAA
66 CAAAGCCCACACGAGTTCGTGGCAACATTTAGTCCTCAAAAAGCAAGATGCCTTTTTCATTTCAA
1420636 AACCCACACGAGTTG
131 AACCCACACGAGTTG
1420651 GTGGTCCGTT
Statistics
Matches: 128, Mismatches: 17, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
164 128 1.00
ACGTcount: A:0.25, C:0.29, G:0.17, T:0.28
Consensus pattern (164 bp):
TTTCAAAACCCACACAAGTTGGTGGCACCCTTTAGTCCTCAAAAAGCAGCACGCCTTTTTCCTTT
CAAAGCCCACACGAGTTCGTGGCAACATTTAGTCCTCAAAAAGCAAGATGCCTTTTTCATTTCAA
AACCCACACGAGTTGATGGCACCCTTTAGTCTCC
Found at i:1420974 original size:41 final size:41
Alignment explanation
Indices: 1420898--1420977 Score: 135
Period size: 41 Copynumber: 2.0 Consensus size: 41
1420888 ACACGAATCG
*
1420898 GTGGCACCCTTTAGTCCTCAAAGAGCAGCATGCCTTTTTAA
1 GTGGCACCCTTTAGTCCTCAAAGAGCAGCACGCCTTTTTAA
1420939 GTGGCACCCTTTAGTCCTCAAAGAGCAAG-ACGCCTTTTT
1 GTGGCACCCTTTAGTCCTCAAAGAGC-AGCACGCCTTTTT
1420978 CCTTTCGAAC
Statistics
Matches: 37, Mismatches: 1, Indels: 2
0.93 0.03 0.05
Matches are distributed among these distances:
41 35 0.95
42 2 0.05
ACGTcount: A:0.24, C:0.28, G:0.20, T:0.29
Consensus pattern (41 bp):
GTGGCACCCTTTAGTCCTCAAAGAGCAGCACGCCTTTTTAA
Found at i:1421047 original size:164 final size:165
Alignment explanation
Indices: 1420774--1421086 Score: 459
Period size: 164 Copynumber: 1.9 Consensus size: 165
1420764 ATAGAAGTTG
* * * *
1420774 GTGGCACCCTTTAGTTCTCAAAGAGAAGGATGCCTTTTTCCTTTCAAAGCCCGCACGAGTTGGTG
1 GTGGCACCCTTTAGTCCTCAAAGAGAAGGACGCCTTTTTCCTTTCAAACCCCACACGAGTTGGTG
* ** * *
1420839 GCACCCTTTAGTCCTCAAAAAGCAGGATGCCTTTTTCCTTTCAAAGCCCACACGAATCGGTGGCA
66 GCACCCTTTAGTCCTCAAAAAGCAAGACACCTTTTTCATTTCAAAGCCCACACGAATCGCTGGCA
1420904 CCCTTTAGTCCTCAAAGAGCAGCATGCCTTTTTAA
131 CCCTTTAGTCCTCAAAGAGCAGCATGCCTTTTTAA
*
1420939 GTGGCACCCTTTAGTCCTCAAAGAGCAA-GACGCCTTTTTCCTTTCGAACCCCACAC-AGTTGGT
1 GTGGCACCCTTTAGTCCTCAAAGAG-AAGGACGCCTTTTTCCTTTCAAACCCCACACGAGTTGGT
* * * *
1421002 GGCACCCTTTAGTCCTCAAAGAGCAAGACACCTTTTTCATTTCAAAGCCTACACGAGTTGCTGGC
65 GGCACCCTTTAGTCCTCAAAAAGCAAGACACCTTTTTCATTTCAAAGCCCACACGAATCGCTGGC
* *
1421067 ACCCTTTAGTCGTCGAAGAG
130 ACCCTTTAGTCCTCAAAGAG
1421087 TAGGACACCT
Statistics
Matches: 131, Mismatches: 16, Indels: 3
0.87 0.11 0.02
Matches are distributed among these distances:
164 81 0.62
165 48 0.37
166 2 0.02
ACGTcount: A:0.24, C:0.29, G:0.20, T:0.27
Consensus pattern (165 bp):
GTGGCACCCTTTAGTCCTCAAAGAGAAGGACGCCTTTTTCCTTTCAAACCCCACACGAGTTGGTG
GCACCCTTTAGTCCTCAAAAAGCAAGACACCTTTTTCATTTCAAAGCCCACACGAATCGCTGGCA
CCCTTTAGTCCTCAAAGAGCAGCATGCCTTTTTAA
Found at i:1421094 original size:62 final size:62
Alignment explanation
Indices: 1420939--1421325 Score: 497
Period size: 62 Copynumber: 6.3 Consensus size: 62
1420929 GCCTTTTTAA
* * *
1420939 GTGGCACCCTTTAGTCCTCAAAGAGCAAGACGCCTTTTTCCTTTCGAACCCCACAC-AGTTG
1 GTGGCACCCTTTAGTCCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACAAGTTG
* * * * *
1421000 GTGGCACCCTTTAGTCCTCAAAGAGCAAGACACCTTTTTCATTTCAAAGCCTACACGAGTTG
1 GTGGCACCCTTTAGTCCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACAAGTTG
* * * * * * *
1421062 CTGGCACCCTTTAGTCGTCGAAGAGTAGGACACCTTTCTCCTTTCAAAGCCCACACGAGTTG
1 GTGGCACCCTTTAGTCCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACAAGTTG
* *
1421124 GTGGCACCCTTTAGTCCTCAAAGAGCAGGCCGCCTTTTTCTTTTCAAAGCCCACACAAGTTG
1 GTGGCACCCTTTAGTCCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACAAGTTG
* * * *
1421186 GTGGCACCCTTTAGTCCTCAAAAATCAGGATGCCTTTTTCCTTTCAAAGCCCACACAAGTTT
1 GTGGCACCCTTTAGTCCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACAAGTTG
* * * * ** **
1421248 GTGGCACCCTTTAGTCCTTAAAGAGCAAGATGTCTTTTTCCTTTCAGCGCCCACACGTGTTG
1 GTGGCACCCTTTAGTCCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACAAGTTG
*
1421310 GTGGCACCCTTCAGTC
1 GTGGCACCCTTTAGTC
1421326 TCCTTTCAAA
Statistics
Matches: 286, Mismatches: 39, Indels: 1
0.88 0.12 0.00
Matches are distributed among these distances:
61 51 0.18
62 235 0.82
ACGTcount: A:0.23, C:0.30, G:0.19, T:0.28
Consensus pattern (62 bp):
GTGGCACCCTTTAGTCCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACAAGTTG
Found at i:1421108 original size:226 final size:227
Alignment explanation
Indices: 1420713--1421151 Score: 648
Period size: 226 Copynumber: 1.9 Consensus size: 227
1420703 CACGTGTTGT
* * * *
1420713 TGGCACCCTTTAGTCCTCAGAGAGCAAGACGTATTTTTCCTTTCAAAGCCCATAGAAGTTGGTGG
1 TGGCACCCTTTAGTCCTCAAAGAGCAAGACGCATTTTTCCTTTCAAACCCCACAGAAGTTGGTGG
* ** * * *
1420778 CACCCTTTAGTTCTCAAAGAGAAGGATGCCTTTTTCCTTTCAAAGCCCGCACGAGTTGGTGGCAC
66 CACCCTTTAGTCCTCAAAGAGAAGGACACCTTTTTCATTTCAAAGCCCACACGAGTTGCTGGCAC
** *
1420843 CCTTTAGTCCTCAAAAAGCAGGATGCCTTTTTCCTTTCAAAGCCCACACGAATCGGTGGCACCCT
131 CCTTTAGTCCTCAAAAAGCAGGACACCTTTCTCCTTTCAAAGCCCACACGAATCGGTGGCACCCT
1420908 TTAGTCCTCAAAGAGCAGCATGCCTTTTTAAG
196 TTAGTCCTCAAAGAGCAGCATGCCTTTTTAAG
* * *
1420940 TGGCACCCTTTAGTCCTCAAAGAGCAAGACGCCTTTTTCCTTTCGAACCCCACA-CAGTTGGTGG
1 TGGCACCCTTTAGTCCTCAAAGAGCAAGACGCATTTTTCCTTTCAAACCCCACAGAAGTTGGTGG
*
1421004 CACCCTTTAGTCCTCAAAGAGCAA-GACACCTTTTTCATTTCAAAGCCTACACGAGTTGCTGGCA
66 CACCCTTTAGTCCTCAAAGAG-AAGGACACCTTTTTCATTTCAAAGCCCACACGAGTTGCTGGCA
* * * * * *
1421068 CCCTTTAGTCGTCGAAGAGTAGGACACCTTTCTCCTTTCAAAGCCCACACGAGTTGGTGGCACCC
130 CCCTTTAGTCCTCAAAAAGCAGGACACCTTTCTCCTTTCAAAGCCCACACGAATCGGTGGCACCC
1421133 TTTAGTCCTCAAAGAGCAG
195 TTTAGTCCTCAAAGAGCAG
1421152 GCCGCCTTTT
Statistics
Matches: 188, Mismatches: 23, Indels: 3
0.88 0.11 0.01
Matches are distributed among these distances:
226 138 0.73
227 50 0.27
ACGTcount: A:0.25, C:0.28, G:0.20, T:0.27
Consensus pattern (227 bp):
TGGCACCCTTTAGTCCTCAAAGAGCAAGACGCATTTTTCCTTTCAAACCCCACAGAAGTTGGTGG
CACCCTTTAGTCCTCAAAGAGAAGGACACCTTTTTCATTTCAAAGCCCACACGAGTTGCTGGCAC
CCTTTAGTCCTCAAAAAGCAGGACACCTTTCTCCTTTCAAAGCCCACACGAATCGGTGGCACCCT
TTAGTCCTCAAAGAGCAGCATGCCTTTTTAAG
Found at i:1421341 original size:40 final size:40
Alignment explanation
Indices: 1421286--1421365 Score: 124
Period size: 40 Copynumber: 2.0 Consensus size: 40
1421276 GATGTCTTTT
** **
1421286 TCCTTTCAGCGCCCACACGTGTTGGTGGCACCCTTCAGTC
1 TCCTTTCAAAGCCCACACAAGTTGGTGGCACCCTTCAGTC
1421326 TCCTTTCAAAGCCCACACAAGTTGGTGGCACCCTTCAGTC
1 TCCTTTCAAAGCCCACACAAGTTGGTGGCACCCTTCAGTC
1421366 CTCAAAGATC
Statistics
Matches: 36, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
40 36 1.00
ACGTcount: A:0.17, C:0.36, G:0.20, T:0.26
Consensus pattern (40 bp):
TCCTTTCAAAGCCCACACAAGTTGGTGGCACCCTTCAGTC
Found at i:1421406 original size:102 final size:102
Alignment explanation
Indices: 1421224--1421414 Score: 274
Period size: 102 Copynumber: 1.9 Consensus size: 102
1421214 GATGCCTTTT
* * * * *
1421224 TCCTTTCAAAGCCCACACAAGTTTGTGGCACCCTTTAGTCCTTAAAGAGCAAGATGTCTTTTTCC
1 TCCTTTCAAAGCCCACACAAGTTGGTGGCACCCTTCAGTCCTCAAAGAGCAAGATGCCTTTCTCC
** * *
1421289 TTTCAGCGCCCACACGTGTTGGTGGCACCCTTCAGTC
66 TTTCAAAGCCAACACGAGTTGGTGGCACCCTTCAGTC
* **
1421326 TCCTTTCAAAGCCCACACAAGTTGGTGGCACCCTTCAGTCCTCAAAGATCTGGATGCCTTTCTCC
1 TCCTTTCAAAGCCCACACAAGTTGGTGGCACCCTTCAGTCCTCAAAGAGCAAGATGCCTTTCTCC
1421391 TTTCAAAGCCAACACGAGTTGGTG
66 TTTCAAAGCCAACACGAGTTGGTG
1421415 ACATCTTTTA
Statistics
Matches: 77, Mismatches: 12, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
102 77 1.00
ACGTcount: A:0.22, C:0.30, G:0.19, T:0.29
Consensus pattern (102 bp):
TCCTTTCAAAGCCCACACAAGTTGGTGGCACCCTTCAGTCCTCAAAGAGCAAGATGCCTTTCTCC
TTTCAAAGCCAACACGAGTTGGTGGCACCCTTCAGTC
Found at i:1421428 original size:62 final size:62
Alignment explanation
Indices: 1421326--1421666 Score: 380
Period size: 62 Copynumber: 5.5 Consensus size: 62
1421316 CCCTTCAGTC
* * * * *
1421326 TCCTTTCAAAGCCCACACAAGTTGGTGGCACCCTTCAGTCCTCAAAGATCTGGATGCCTTTC
1 TCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTT
* * * * * *
1421388 TCCTTTCAAAGCCAACACGAGTTGGTGACATCTTTTAGTCCTCAAAAAGCAGGTTGCCTTTT
1 TCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTT
* * * * ** * * *
1421450 TCGTTTCAAA-CCTACACGGGTTGGTGGC-CTCATTTTTTCCTCAAAGAGTAGTATTCCTTTT
1 TCCTTTCAAAGCCCACACGAGTTGGTGGCAC-CCTTTAGTCCTCAAAGAGCAGGATGCCTTTT
* * * * *
1421511 TCTTTTCAAAGCCTACACGAGTTTGTGGCACCCTTTAGTTCTGAAAGAGCAGGATGCCTTTT
1 TCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTT
* * * * *
1421573 TCTTTTCAAAGCCCACACGAGTTTGTGACACCCTTTAGTCCTCAAAGAGCAAGATGCCCTTT
1 TCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTT
*
1421635 TCCTTTCAATGCCCACACGAGTTGGTGGCACC
1 TCCTTTCAAAGCCCACACGAGTTGGTGGCACC
1421667 ATTCAGTCTC
Statistics
Matches: 231, Mismatches: 45, Indels: 6
0.82 0.16 0.02
Matches are distributed among these distances:
61 47 0.20
62 183 0.79
63 1 0.00
ACGTcount: A:0.23, C:0.27, G:0.18, T:0.32
Consensus pattern (62 bp):
TCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTT
Found at i:1421569 original size:123 final size:124
Alignment explanation
Indices: 1421329--1421666 Score: 358
Period size: 123 Copynumber: 2.7 Consensus size: 124
1421319 TTCAGTCTCC
* * * * * ** *
1421329 TTTCAAAGCCCACACAAGTTGGTGGCACCCTTCAGTCCTCAAAGATCTGGATGCCTTTCTCCTTT
1 TTTCAAAGCCCACACGAGTTGGTGACACCATTTAGTCCTCAAAGAGCAAGATGCCTTTTTCCTTT
* * * *
1421394 CAAAGCCAACACGAGTTGGTGACATCTTTTAGTCCTCAAAAAGCAGGTTGCCTTTTTCG
66 CAAAGCCAACACGAGTTGGTGGCACCCTTTAGTCCTCAAAAAGCAGGATGCCTTTTTCG
* * * ** * * *
1421453 TTTCAAA-CCTACACGGGTTGGTGGC-CTCATTTTTTCCTCAAAGAG-TAGTATTCCTTTTTCTT
1 TTTCAAAGCCCACACGAGTTGGTGACAC-CATTTAGTCCTCAAAGAGCAAG-ATGCCTTTTTCCT
* * * * * *
1421515 TTCAAAGCCTACACGAGTTTGTGGCACCCTTTAGTTCTGAAAGAGCAGGATGCCTTTTTCT
64 TTCAAAGCCAACACGAGTTGGTGGCACCCTTTAGTCCTCAAAAAGCAGGATGCCTTTTTCG
* * *
1421576 TTTCAAAGCCCACACGAGTTTGTGACACCCTTTAGTCCTCAAAGAGCAAGATGCCCTTTTCCTTT
1 TTTCAAAGCCCACACGAGTTGGTGACACCATTTAGTCCTCAAAGAGCAAGATGCCTTTTTCCTTT
* *
1421641 CAATGCCCACACGAGTTGGTGGCACC
66 CAAAGCCAACACGAGTTGGTGGCACC
1421667 ATTCAGTCTC
Statistics
Matches: 173, Mismatches: 36, Indels: 10
0.79 0.16 0.05
Matches are distributed among these distances:
122 3 0.02
123 96 0.55
124 71 0.41
125 3 0.02
ACGTcount: A:0.23, C:0.27, G:0.19, T:0.32
Consensus pattern (124 bp):
TTTCAAAGCCCACACGAGTTGGTGACACCATTTAGTCCTCAAAGAGCAAGATGCCTTTTTCCTTT
CAAAGCCAACACGAGTTGGTGGCACCCTTTAGTCCTCAAAAAGCAGGATGCCTTTTTCG
Found at i:1421754 original size:102 final size:102
Alignment explanation
Indices: 1421576--1421768 Score: 287
Period size: 102 Copynumber: 1.9 Consensus size: 102
1421566 GCCTTTTTCT
* * * *
1421576 TTTCAAAGCCCACACGAGTTTGTGACACCCTTTAGTCCTCAAAGAGCAAGATGCCCTTTTCCTTT
1 TTTCAAAGCCCACACAAGTTGGTGACACCCTTTAGTCCTCAAAAAGCAAGATGCCCTTTTCATTT
* **
1421641 CAATGCCCACACGAGTTGGTGGCACCATTCAGTCTCC
66 CAAAGCCCACACGAGTTCATGGCACCATTCAGTCTCC
* * *
1421678 TTTCAAAGCCCACACAAGTTGGTGGCACCCTTTAGTCCTCAAAAAGCAGGATGCCTTTTTCATTT
1 TTTCAAAGCCCACACAAGTTGGTGACACCCTTTAGTCCTCAAAAAGCAAGATGCCCTTTTCATTT
*
1421743 CAAAGCTCACACGAGTTCATGGCACC
66 CAAAGCCCACACGAGTTCATGGCACC
1421769 CTTTAGTCCT
Statistics
Matches: 80, Mismatches: 11, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
102 80 1.00
ACGTcount: A:0.25, C:0.30, G:0.18, T:0.27
Consensus pattern (102 bp):
TTTCAAAGCCCACACAAGTTGGTGACACCCTTTAGTCCTCAAAAAGCAAGATGCCCTTTTCATTT
CAAAGCCCACACGAGTTCATGGCACCATTCAGTCTCC
Found at i:1421775 original size:62 final size:62
Alignment explanation
Indices: 1421675--1422108 Score: 482
Period size: 62 Copynumber: 7.0 Consensus size: 62
1421665 CCATTCAGTC
* *
1421675 TCCTTTCAAAGCCCACACAAGTTGGTGGCACCCTTTAGTCCTCAAAAAGCAGGATGCCTTTT
1 TCCTTTCAAAGCCCACACGAGTTGATGGCACCCTTTAGTCCTCAAAAAGCAGGATGCCTTTT
* * * * *
1421737 TCATTTCAAAGCTCACACGAGTTCATGGCACCCTTTAGTCCTTAAAATGCAGGATGCCTTTT
1 TCCTTTCAAAGCCCACACGAGTTGATGGCACCCTTTAGTCCTCAAAAAGCAGGATGCCTTTT
* * * * * * * * * **
1421799 TCGTTTAAAAACCCACATTG-GTTGGTGG-TCCATTTTGTCCTCAAAGAGCAGGACACCTTTT
1 TCCTTTCAAAGCCCACA-CGAGTTGATGGCACCCTTTAGTCCTCAAAAAGCAGGATGCCTTTT
* * * * * * **
1421860 TCTTTTCAAAGCCCGCAC-ATGTTGTTGGCACCCTTTAGTCCTCAAAGAGCAAGACGTATTTT
1 TCCTTTCAAAGCCCACACGA-GTTGATGGCACCCTTTAGTCCTCAAAAAGCAGGATGCCTTTT
* * *
1421922 TCTTTTCAAAGCCCACA-GAAGTTGATGGGACCCTTTAGTCCTCAAATAGCAGGATGCCTTTT
1 TCCTTTCAAAGCCCACACG-AGTTGATGGCACCCTTTAGTCCTCAAAAAGCAGGATGCCTTTT
* * * *
1421984 TCCTTTCGAAGCCCGCACGAGTTGGTGGCACCCTTCAGTCCTCAAAAAGCAGGATGCCTTTT
1 TCCTTTCAAAGCCCACACGAGTTGATGGCACCCTTTAGTCCTCAAAAAGCAGGATGCCTTTT
* *
1422046 TCCTTTCAAAGCCCACACGAGTT-AGTGGCACCCTTTAGTCCTCAAAGAGCAGCATGCCTTTT
1 TCCTTTCAAAGCCCACACGAGTTGA-TGGCACCCTTTAGTCCTCAAAAAGCAGGATGCCTTTT
1422108 T
1 T
1422109 AAGTGGCACC
Statistics
Matches: 308, Mismatches: 56, Indels: 16
0.81 0.15 0.04
Matches are distributed among these distances:
61 45 0.15
62 260 0.84
63 3 0.01
ACGTcount: A:0.24, C:0.27, G:0.19, T:0.30
Consensus pattern (62 bp):
TCCTTTCAAAGCCCACACGAGTTGATGGCACCCTTTAGTCCTCAAAAAGCAGGATGCCTTTT
Found at i:1421826 original size:164 final size:164
Alignment explanation
Indices: 1421514--1421815 Score: 426
Period size: 164 Copynumber: 1.8 Consensus size: 164
1421504 TCCTTTTTCT
* * * * * * *
1421514 TTTCAAAGCCTACACGAGTTTGTGGCACCCTTTAGTTCTGAAAGAGCAGGATGCCTTTTTCTTTT
1 TTTCAAAGCCCACACAAGTTGGTGGCACCCTTTAGTCCTCAAAAAGCAGGATGCCTTTTTCATTT
** *
1421579 CAAAGCCCACACGAGTTTGTGACACCCTTTAGTCCTCAAAGAGCAAGATGCCCTTTTCCTTTCAA
66 CAAAGCCCACACGAGTTCATGACACCCTTTAGTCCTCAAAGAGCAAGATGCCCTTTTCCTTTAAA
**
1421644 TGCCCACACGAGTTGGTGGCACCATTCAGTCTCC
131 AACCCACACGAGTTGGTGGCACCATTCAGTCTCC
1421678 TTTCAAAGCCCACACAAGTTGGTGGCACCCTTTAGTCCTCAAAAAGCAGGATGCCTTTTTCATTT
1 TTTCAAAGCCCACACAAGTTGGTGGCACCCTTTAGTCCTCAAAAAGCAGGATGCCTTTTTCATTT
* * * * * *
1421743 CAAAGCTCACACGAGTTCATGGCACCCTTTAGTCCTTAAA-ATGCAGGATGCCTTTTTCGTTTAA
66 CAAAGCCCACACGAGTTCATGACACCCTTTAGTCCTCAAAGA-GCAAGATGCCCTTTTCCTTTAA
1421807 AAACCCACA
130 AAACCCACA
1421816 TTGGTTGGTG
Statistics
Matches: 119, Mismatches: 18, Indels: 2
0.86 0.13 0.01
Matches are distributed among these distances:
163 1 0.01
164 118 0.99
ACGTcount: A:0.25, C:0.27, G:0.18, T:0.29
Consensus pattern (164 bp):
TTTCAAAGCCCACACAAGTTGGTGGCACCCTTTAGTCCTCAAAAAGCAGGATGCCTTTTTCATTT
CAAAGCCCACACGAGTTCATGACACCCTTTAGTCCTCAAAGAGCAAGATGCCCTTTTCCTTTAAA
AACCCACACGAGTTGGTGGCACCATTCAGTCTCC
Found at i:1422146 original size:41 final size:41
Alignment explanation
Indices: 1422069--1422149 Score: 128
Period size: 41 Copynumber: 2.0 Consensus size: 41
1422059 CACACGAGTT
* *
1422069 AGTGGCACCCTTTAGTCCTCAAAGAGCAGCATGCCTTTTTA
1 AGTGGCACCCTTCAGTCCTCAAAGAGCAGCACGCCTTTTTA
1422110 AGTGGCACCCTTCAGTCCTCAAAGAGCAAG-ACGCCTTTTT
1 AGTGGCACCCTTCAGTCCTCAAAGAGC-AGCACGCCTTTTT
1422150 CCTTTCGAAG
Statistics
Matches: 37, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
41 35 0.95
42 2 0.05
ACGTcount: A:0.25, C:0.28, G:0.20, T:0.27
Consensus pattern (41 bp):
AGTGGCACCCTTCAGTCCTCAAAGAGCAGCACGCCTTTTTA
Found at i:1422230 original size:164 final size:165
Alignment explanation
Indices: 1421951--1422258 Score: 467
Period size: 164 Copynumber: 1.9 Consensus size: 165
1421941 AGTTGATGGG
* * * * *
1421951 ACCCTTTAGTCCTCAAATAGCAGGATGCCTTTTTCCTTTCGAAGCCCGCACGAGTTGGTGGCACC
1 ACCCTTCAGTCCTCAAAGAGCAAGACGCCTTTTTCCTTTCGAAGCCCACACGAGTTGGTGGCACC
* ** *
1422016 CTTCAGTCCTCAAAAAGCAGGATGCCTTTTTCCTTTCAAAGCCCACACGAGTTAG-TGGCACCCT
66 CTTCAGTCCTCAAAAAGCAAGACACCTTTTTCATTTCAAAGCCCACACGAGTT-GCTGGCACCCT
1422080 TTAGTCCTCAAAGAGCAGCATGCCTTTTTAAGTGGC
130 TTAGTCCTCAAAGAGCAGCATGCCTTTTTAAGTGGC
1422116 ACCCTTCAGTCCTCAAAGAGCAAGACGCCTTTTTCCTTTCGAAGCCCACAC-AGTTGGTGGCACC
1 ACCCTTCAGTCCTCAAAGAGCAAGACGCCTTTTTCCTTTCGAAGCCCACACGAGTTGGTGGCACC
* * *
1422180 CTTTAGTCCTCAAAGAGCAAGACACCTTTTTCATTTCAAAGCCTACACGAGTTGCTGGCACCCTT
66 CTTCAGTCCTCAAAAAGCAAGACACCTTTTTCATTTCAAAGCCCACACGAGTTGCTGGCACCCTT
* *
1422245 TAGTCGTCGAAGAG
131 TAGTCCTCAAAGAG
1422259 TAGGACACCT
Statistics
Matches: 128, Mismatches: 14, Indels: 3
0.88 0.10 0.02
Matches are distributed among these distances:
163 1 0.01
164 81 0.63
165 46 0.36
ACGTcount: A:0.24, C:0.30, G:0.19, T:0.27
Consensus pattern (165 bp):
ACCCTTCAGTCCTCAAAGAGCAAGACGCCTTTTTCCTTTCGAAGCCCACACGAGTTGGTGGCACC
CTTCAGTCCTCAAAAAGCAAGACACCTTTTTCATTTCAAAGCCCACACGAGTTGCTGGCACCCTT
TAGTCCTCAAAGAGCAGCATGCCTTTTTAAGTGGC
Found at i:1422266 original size:62 final size:62
Alignment explanation
Indices: 1422111--1422497 Score: 515
Period size: 62 Copynumber: 6.3 Consensus size: 62
1422101 GCCTTTTTAA
* *
1422111 GTGGCACCCTTCAGTCCTCAAAGAGCAAGACGCCTTTTTCCTTTCGAAGCCCACAC-AGTTG
1 GTGGCACCCTTTAGTCCTCAAAGAGCAAGACGCCTTTTTCCTTTCAAAGCCCACACAAGTTG
* * * *
1422172 GTGGCACCCTTTAGTCCTCAAAGAGCAAGACACCTTTTTCATTTCAAAGCCTACACGAGTTG
1 GTGGCACCCTTTAGTCCTCAAAGAGCAAGACGCCTTTTTCCTTTCAAAGCCCACACAAGTTG
* * * * * * *
1422234 CTGGCACCCTTTAGTCGTCGAAGAGTAGGACACCTTTTTCCTTTCAAAGCCCACACGAGTTG
1 GTGGCACCCTTTAGTCCTCAAAGAGCAAGACGCCTTTTTCCTTTCAAAGCCCACACAAGTTG
* *
1422296 GTGGCACCCTTTAGTCCTCAAAGAGCAAGCCGCCTTTTTCTTTTCAAAGCCCACACAAGTTG
1 GTGGCACCCTTTAGTCCTCAAAGAGCAAGACGCCTTTTTCCTTTCAAAGCCCACACAAGTTG
* * * * *
1422358 GTGGCACCCTTTAGTCCTCAAAAATCAGGATGCCTTTTTCCTTTCAAAGCCCACACAAGTTT
1 GTGGCACCCTTTAGTCCTCAAAGAGCAAGACGCCTTTTTCCTTTCAAAGCCCACACAAGTTG
* * * ** **
1422420 GTGGCACCCTTTAGTCCTTAAAGAGCAAGATGTCTTTTTCCTTTCAGCGCCCACACGTGTTG
1 GTGGCACCCTTTAGTCCTCAAAGAGCAAGACGCCTTTTTCCTTTCAAAGCCCACACAAGTTG
*
1422482 GTGGCACCCTTCAGTC
1 GTGGCACCCTTTAGTC
1422498 TCCTTTCAAA
Statistics
Matches: 286, Mismatches: 39, Indels: 1
0.88 0.12 0.00
Matches are distributed among these distances:
61 51 0.18
62 235 0.82
ACGTcount: A:0.23, C:0.30, G:0.19, T:0.28
Consensus pattern (62 bp):
GTGGCACCCTTTAGTCCTCAAAGAGCAAGACGCCTTTTTCCTTTCAAAGCCCACACAAGTTG
Found at i:1422280 original size:226 final size:227
Alignment explanation
Indices: 1421885--1422322 Score: 644
Period size: 226 Copynumber: 1.9 Consensus size: 227
1421875 CACATGTTGT
* * *
1421885 TGGCACCCTTTAGTCCTCAAAGAGCAAGACGTATTTTTCTTTTCAAAGCCCACAGAAGTTGATGG
1 TGGCACCCTTCAGTCCTCAAAGAGCAAGACGCATTTTTCCTTTCAAAGCCCACAGAAGTTGATGG
* * * ** * * * *
1421950 GACCCTTTAGTCCTCAAATAGCAGGATGCCTTTTTCCTTTCGAAGCCCGCACGAGTTGGTGGCAC
66 CACCCTTTAGTCCTCAAAGAGCAAGACACCTTTTTCATTTCAAAGCCCACACGAGTTGCTGGCAC
**
1422015 CCTTCAGTCCTCAAAAAGCAGGATGCCTTTTTCCTTTCAAAGCCCACACGAGTTAGTGGCACCCT
131 CCTTCAGTCCTCAAAAAGCAGGACACCTTTTTCCTTTCAAAGCCCACACGAGTTAGTGGCACCCT
1422080 TTAGTCCTCAAAGAGCAGCATGCCTTTTTAAG
196 TTAGTCCTCAAAGAGCAGCATGCCTTTTTAAG
* * * *
1422112 TGGCACCCTTCAGTCCTCAAAGAGCAAGACGCCTTTTTCCTTTCGAAGCCCACA-CAGTTGGTGG
1 TGGCACCCTTCAGTCCTCAAAGAGCAAGACGCATTTTTCCTTTCAAAGCCCACAGAAGTTGATGG
*
1422176 CACCCTTTAGTCCTCAAAGAGCAAGACACCTTTTTCATTTCAAAGCCTACACGAGTTGCTGGCAC
66 CACCCTTTAGTCCTCAAAGAGCAAGACACCTTTTTCATTTCAAAGCCCACACGAGTTGCTGGCAC
* * * * * *
1422241 CCTTTAGTCGTCGAAGAGTAGGACACCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCT
131 CCTTCAGTCCTCAAAAAGCAGGACACCTTTTTCCTTTCAAAGCCCACACGAGTTAGTGGCACCCT
1422306 TTAGTCCTCAAAGAGCA
196 TTAGTCCTCAAAGAGCA
1422323 AGCCGCCTTT
Statistics
Matches: 186, Mismatches: 25, Indels: 1
0.88 0.12 0.00
Matches are distributed among these distances:
226 137 0.74
227 49 0.26
ACGTcount: A:0.25, C:0.29, G:0.20, T:0.27
Consensus pattern (227 bp):
TGGCACCCTTCAGTCCTCAAAGAGCAAGACGCATTTTTCCTTTCAAAGCCCACAGAAGTTGATGG
CACCCTTTAGTCCTCAAAGAGCAAGACACCTTTTTCATTTCAAAGCCCACACGAGTTGCTGGCAC
CCTTCAGTCCTCAAAAAGCAGGACACCTTTTTCCTTTCAAAGCCCACACGAGTTAGTGGCACCCT
TTAGTCCTCAAAGAGCAGCATGCCTTTTTAAG
Found at i:1422513 original size:40 final size:40
Alignment explanation
Indices: 1422458--1422537 Score: 106
Period size: 40 Copynumber: 2.0 Consensus size: 40
1422448 GATGTCTTTT
** **
1422458 TCCTTTCAGCGCCCACACGTGTTGGTGGCACCCTTCAGTC
1 TCCTTTCAAAGCCCACACAAGTTGGTGGCACCCTTCAGTC
* *
1422498 TCCTTTCAAAGCCCACACAAGTTGGTGGCATCCTTTAGTC
1 TCCTTTCAAAGCCCACACAAGTTGGTGGCACCCTTCAGTC
1422538 CTCAATAATC
Statistics
Matches: 34, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
40 34 1.00
ACGTcount: A:0.17, C:0.34, G:0.20, T:0.29
Consensus pattern (40 bp):
TCCTTTCAAAGCCCACACAAGTTGGTGGCACCCTTCAGTC
Found at i:1422574 original size:102 final size:102
Alignment explanation
Indices: 1422396--1422599 Score: 284
Period size: 102 Copynumber: 2.0 Consensus size: 102
1422386 GATGCCTTTT
* * *
1422396 TCCTTTCAAAGCCCACACAAGTTTGTGGCACCCTTTAGTCCTTAAAGAGCAAGATGTCTTTTTCC
1 TCCTTTCAAAGCCCACACAAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAAGATGCCTTTTTCC
** **
1422461 TTTCAGCGCCCACACGTGTTGGTGGCACCCTTCAGTC
66 TTTCAAAGCCCACACAAGTTGGTGGCACCCTTCAGTC
* * *
1422498 TCCTTTCAAAGCCCACACAAGTTGGTGGCATCCTTTAGTCCTCAATA-ATCAGGATGCCTTTTTC
1 TCCTTTCAAAGCCCACACAAGTTGGTGGCACCCTTTAGTCCTCAA-AGAGCAAGATGCCTTTTTC
* *
1422562 CTTTCAAAGCCCACACAAGTTTGTGGCACCCTTTAGTC
65 CTTTCAAAGCCCACACAAGTTGGTGGCACCCTTCAGTC
1422600 CTTAAAGTGC
Statistics
Matches: 89, Mismatches: 12, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
102 88 0.99
103 1 0.01
ACGTcount: A:0.22, C:0.30, G:0.17, T:0.31
Consensus pattern (102 bp):
TCCTTTCAAAGCCCACACAAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAAGATGCCTTTTTCC
TTTCAAAGCCCACACAAGTTGGTGGCACCCTTCAGTC
Found at i:1422595 original size:62 final size:62
Alignment explanation
Indices: 1422498--1422661 Score: 213
Period size: 62 Copynumber: 2.6 Consensus size: 62
1422488 CCCTTCAGTC
* *
1422498 TCCTTTCAAAGCCCACACAAGTTGGTGGCATCCTTTAGTCCTCAATAAT-CAGGATGCCTTTT
1 TCCTTTCAAAGCCCACACAAGTTGGTGGCACCCTTTAGTCCTCAA-AATGCAAGATGCCTTTT
* * * *
1422560 TCCTTTCAAAGCCCACACAAGTTTGTGGCACCCTTTAGTCCTTAAAGTGCAAGATGTCTTTT
1 TCCTTTCAAAGCCCACACAAGTTGGTGGCACCCTTTAGTCCTCAAAATGCAAGATGCCTTTT
** ** *
1422622 TCCTTTCAGCGCCCACACGTGTTGGTGGCACCCTTCAGTC
1 TCCTTTCAAAGCCCACACAAGTTGGTGGCACCCTTTAGTC
1422662 TCCTTTCAAA
Statistics
Matches: 89, Mismatches: 12, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
61 2 0.02
62 87 0.98
ACGTcount: A:0.21, C:0.29, G:0.18, T:0.32
Consensus pattern (62 bp):
TCCTTTCAAAGCCCACACAAGTTGGTGGCACCCTTTAGTCCTCAAAATGCAAGATGCCTTTT
Found at i:1422614 original size:164 final size:163
Alignment explanation
Indices: 1422337--1422793 Score: 734
Period size: 164 Copynumber: 2.8 Consensus size: 163
1422327 GCCTTTTTCT
1422337 TTTCAAAGCCCACACAAGTTGGTGGCACCCTTTAGTCCTCAAAAATCAGGATGCCTTTTTCCTTT
1 TTTCAAAGCCCACACAAGTTGGTGGCACCCTTTAGTCCTC-AAAATCAGGATGCCTTTTTCCTTT
1422402 CAAAGCCCACACAAGTTTGTGGCACCCTTTAGTCCTTAAAGAGCAAGATGTCTTTTTCCTTTCAG
65 CAAAGCCCACACAAGTTTGTGGCACCCTTTAGTCCTTAAAGAGCAAGATGTCTTTTTCCTTTCAG
1422467 CGCCCACACGTGTTGGTGGCACCCTTCAGTCTCC
130 CGCCCACACGTGTTGGTGGCACCCTTCAGTCTCC
*
1422501 TTTCAAAGCCCACACAAGTTGGTGGCATCCTTTAGTCCTCAATAATCAGGATGCCTTTTTCCTTT
1 TTTCAAAGCCCACACAAGTTGGTGGCACCCTTTAGTCCTCAA-AATCAGGATGCCTTTTTCCTTT
*
1422566 CAAAGCCCACACAAGTTTGTGGCACCCTTTAGTCCTTAAAGTGCAAGATGTCTTTTTCCTTTCAG
65 CAAAGCCCACACAAGTTTGTGGCACCCTTTAGTCCTTAAAGAGCAAGATGTCTTTTTCCTTTCAG
1422631 CGCCCACACGTGTTGGTGGCACCCTTCAGTCTCC
130 CGCCCACACGTGTTGGTGGCACCCTTCAGTCTCC
* * *
1422665 TTTCAAAGCCCACACAAGTTGGTGGCACCCTTTAGTCCTTAAAGAGCAGGATGCCTTTCTCCTTT
1 TTTCAAAGCCCACACAAGTTGGTGGCACCCTTTAGTCCTCAAA-ATCAGGATGCCTTTTTCCTTT
* * * * * * * * * * * *
1422730 CAAAGCCAACACGAGTTGGTGACATCTTTTAGTCCTCAAAAAGCAGGTTGCCTTTTTCGTTTCA
65 CAAAGCCCACACAAGTTTGTGGCACCCTTTAGTCCTTAAAGAGCAAGATGTCTTTTTCCTTTCA
1422794 AACCTACACG
Statistics
Matches: 272, Mismatches: 19, Indels: 4
0.92 0.06 0.01
Matches are distributed among these distances:
163 3 0.01
164 269 0.99
ACGTcount: A:0.23, C:0.28, G:0.18, T:0.31
Consensus pattern (163 bp):
TTTCAAAGCCCACACAAGTTGGTGGCACCCTTTAGTCCTCAAAATCAGGATGCCTTTTTCCTTTC
AAAGCCCACACAAGTTTGTGGCACCCTTTAGTCCTTAAAGAGCAAGATGTCTTTTTCCTTTCAGC
GCCCACACGTGTTGGTGGCACCCTTCAGTCTCC
Found at i:1422666 original size:102 final size:102
Alignment explanation
Indices: 1422560--1422750 Score: 301
Period size: 102 Copynumber: 1.9 Consensus size: 102
1422550 GATGCCTTTT
* * * *
1422560 TCCTTTCAAAGCCCACACAAGTTTGTGGCACCCTTTAGTCCTTAAAGTGCAAGATGTCTTTTTCC
1 TCCTTTCAAAGCCCACACAAGTTGGTGGCACCCTTTAGTCCTTAAAGAGCAAGATGCCTTTCTCC
** * *
1422625 TTTCAGCGCCCACACGTGTTGGTGGCACCCTTCAGTC
66 TTTCAAAGCCAACACGAGTTGGTGGCACCCTTCAGTC
*
1422662 TCCTTTCAAAGCCCACACAAGTTGGTGGCACCCTTTAGTCCTTAAAGAGCAGGATGCCTTTCTCC
1 TCCTTTCAAAGCCCACACAAGTTGGTGGCACCCTTTAGTCCTTAAAGAGCAAGATGCCTTTCTCC
1422727 TTTCAAAGCCAACACGAGTTGGTG
66 TTTCAAAGCCAACACGAGTTGGTG
1422751 ACATCTTTTA
Statistics
Matches: 80, Mismatches: 9, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
102 80 1.00
ACGTcount: A:0.22, C:0.29, G:0.19, T:0.29
Consensus pattern (102 bp):
TCCTTTCAAAGCCCACACAAGTTGGTGGCACCCTTTAGTCCTTAAAGAGCAAGATGCCTTTCTCC
TTTCAAAGCCAACACGAGTTGGTGGCACCCTTCAGTC
Found at i:1422677 original size:40 final size:40
Alignment explanation
Indices: 1422622--1422701 Score: 115
Period size: 40 Copynumber: 2.0 Consensus size: 40
1422612 GATGTCTTTT
** **
1422622 TCCTTTCAGCGCCCACACGTGTTGGTGGCACCCTTCAGTC
1 TCCTTTCAAAGCCCACACAAGTTGGTGGCACCCTTCAGTC
*
1422662 TCCTTTCAAAGCCCACACAAGTTGGTGGCACCCTTTAGTC
1 TCCTTTCAAAGCCCACACAAGTTGGTGGCACCCTTCAGTC
1422702 CTTAAAGAGC
Statistics
Matches: 35, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
40 35 1.00
ACGTcount: A:0.17, C:0.35, G:0.20, T:0.28
Consensus pattern (40 bp):
TCCTTTCAAAGCCCACACAAGTTGGTGGCACCCTTCAGTC
Found at i:1422761 original size:62 final size:62
Alignment explanation
Indices: 1422662--1423001 Score: 341
Period size: 62 Copynumber: 5.5 Consensus size: 62
1422652 CCCTTCAGTC
* * * *
1422662 TCCTTTCAAAGCCCACACAAGTTGGTGGCACCCTTTAGTCCTTAAAGAGCAGGATGCCTTTC
1 TCCTTTCAAAGCCCACACGAGTTGGTGGCACCTTTTAGTCCTCAAAGAGCAGGATGCCTTTT
* * * * *
1422724 TCCTTTCAAAGCCAACACGAGTTGGTGACATCTTTTAGTCCTCAAAAAGCAGGTTGCCTTTT
1 TCCTTTCAAAGCCCACACGAGTTGGTGGCACCTTTTAGTCCTCAAAGAGCAGGATGCCTTTT
* * * * *
1422786 TCGTTTCAAA-CCTACACGGGTTGGTGGC-CTCATTTT-TTCCTCAAAGAGTAGGACT-CCTTTT
1 TCCTTTCAAAGCCCACACGAGTTGGTGGCAC-C-TTTTAGTCCTCAAAGAGCAGGA-TGCCTTTT
* * * * * * * *
1422847 TCTTTTCAAAGCCTACACGAGTTTGTGGCACCCTTTAGTTCTGAAGGAGTAGGATGCCTTTT
1 TCCTTTCAAAGCCCACACGAGTTGGTGGCACCTTTTAGTCCTCAAAGAGCAGGATGCCTTTT
* * ** * *
1422909 TCTTTTCAAAGCCCACACGAGTTTGTTACA-CTCTTTAGTCCTCAAAGAGCAAGATGCCCTTT
1 TCCTTTCAAAGCCCACACGAGTTGGTGGCACCT-TTTAGTCCTCAAAGAGCAGGATGCCTTTT
*
1422971 TCCTTTCAATGCCCACA-GAGTTGGTGGCACC
1 TCCTTTCAAAGCCCACACGAGTTGGTGGCACC
1423002 ATTCAGTCTC
Statistics
Matches: 228, Mismatches: 41, Indels: 18
0.79 0.14 0.06
Matches are distributed among these distances:
61 58 0.25
62 169 0.74
63 1 0.00
ACGTcount: A:0.23, C:0.26, G:0.19, T:0.32
Consensus pattern (62 bp):
TCCTTTCAAAGCCCACACGAGTTGGTGGCACCTTTTAGTCCTCAAAGAGCAGGATGCCTTTT
Found at i:1422905 original size:123 final size:124
Alignment explanation
Indices: 1422665--1423001 Score: 308
Period size: 123 Copynumber: 2.7 Consensus size: 124
1422655 TTCAGTCTCC
** * ** *
1422665 TTTCAAAGCCCACACAAGTTGGTGGCAC-CCTTTAGTCCTTAAAGAGCAGGATGCCTTTCTCCTT
1 TTTCAAAGCCCACACGGGTTGGTGGC-CTCATTTTTTCCTCAAAGAGCAGGATGCCTTTCTCCTT
* * *
1422729 TCAAAGCCAACACGAGTTGGTGACATCTTTTAGTCCTCAAAAAGCAGGTTGCCTTTTTCG
65 TCAAAGCCAACACGAGTTGGTGACACCCTTTAGTCCTCAAAAAGCAGGATGCCTTTTTCG
* * * *
1422789 TTTCAAA-CCTACACGGGTTGGTGGCCTCATTTTTTCCTCAAAGAGTAGGACT-CCTTTTTCTTT
1 TTTCAAAGCCCACACGGGTTGGTGGCCTCATTTTTTCCTCAAAGAGCAGGA-TGCCTTTCTCCTT
* * * * * ** * *
1422852 TCAAAGCCTACACGAGTTTGTGGCACCCTTTAGTTCTGAAGGAGTAGGATGCCTTTTTCT
65 TCAAAGCCAACACGAGTTGGTGACACCCTTTAGTCCTCAAAAAGCAGGATGCCTTTTTCG
* * ** ** *
1422912 TTTCAAAGCCCACACGAGTTTGTTACACTC-TTTAGTCCTCAAAGAGCAAGATGCCCTTT-TCCT
1 TTTCAAAGCCCACACGGGTTGGTGGC-CTCATTTTTTCCTCAAAGAGCAGGATG-CCTTTCTCCT
* * *
1422975 TTCAATGCCCACA-GAGTTGGTGGCACC
64 TTCAAAGCCAACACGAGTTGGTGACACC
1423002 ATTCAGTCTC
Statistics
Matches: 172, Mismatches: 35, Indels: 13
0.78 0.16 0.06
Matches are distributed among these distances:
122 1 0.01
123 111 0.65
124 52 0.30
125 8 0.05
ACGTcount: A:0.23, C:0.26, G:0.19, T:0.32
Consensus pattern (124 bp):
TTTCAAAGCCCACACGGGTTGGTGGCCTCATTTTTTCCTCAAAGAGCAGGATGCCTTTCTCCTTT
CAAAGCCAACACGAGTTGGTGACACCCTTTAGTCCTCAAAAAGCAGGATGCCTTTTTCG
Found at i:1422996 original size:185 final size:185
Alignment explanation
Indices: 1422665--1422998 Score: 456
Period size: 185 Copynumber: 1.8 Consensus size: 185
1422655 TTCAGTCTCC
*
1422665 TTTCAAAGCCCACACAAGTTGGTGGCACCCTTTAGTCCTTAAAGAGCAGGATGCCTTTCTCCTTT
1 TTTCAAAGCCCACACAAGTTGGTGGCACCCTTTAGTCCTGAAAGAGCAGGATGCCTTTCTCCTTT
* * * *
1422730 CAAAGCCAACACGAGTTGGTGACATCTTTTAGTCCTCAAAAAGCAGGTTGCCTTTTTCGTTTCAA
66 CAAAGCCAACACGAGTTGGTGACATCTTTTAGTCCTCAAAAAGCAAGATGCCCTTTTCCTTTCAA
* *
1422795 ACCTACACGGGTTGGTGGCCTCATTTTTTCCTCAAAGAGTAGGACTCCTTTTTCT
131 ACCCACACGAGTTGGTGGCCTCATTTTTTCCTCAAAGAGTAGGACTCCTTTTTCT
* * * * * * * *
1422850 TTTCAAAGCCTACACGAGTTTGTGGCACCCTTTAGTTCTGAAGGAGTAGGATGCCTTTTTCTTTT
1 TTTCAAAGCCCACACAAGTTGGTGGCACCCTTTAGTCCTGAAAGAGCAGGATGCCTTTCTCCTTT
* * * *
1422915 CAAAGCCCACACGAGTTTGTTACA-CTCTTTAGTCCTCAAAGAGCAAGATGCCCTTTTCCTTTCA
66 CAAAGCCAACACGAGTTGGTGACATCT-TTTAGTCCTCAAAAAGCAAGATGCCCTTTTCCTTTCA
*
1422979 ATGCCCACA-GAGTTGGTGGC
130 A-ACCCACACGAGTTGGTGGC
1422999 ACCATTCAGT
Statistics
Matches: 127, Mismatches: 20, Indels: 4
0.84 0.13 0.03
Matches are distributed among these distances:
184 2 0.02
185 120 0.94
186 5 0.04
ACGTcount: A:0.23, C:0.25, G:0.19, T:0.32
Consensus pattern (185 bp):
TTTCAAAGCCCACACAAGTTGGTGGCACCCTTTAGTCCTGAAAGAGCAGGATGCCTTTCTCCTTT
CAAAGCCAACACGAGTTGGTGACATCTTTTAGTCCTCAAAAAGCAAGATGCCCTTTTCCTTTCAA
ACCCACACGAGTTGGTGGCCTCATTTTTTCCTCAAAGAGTAGGACTCCTTTTTCT
Found at i:1423124 original size:62 final size:62
Alignment explanation
Indices: 1423010--1423443 Score: 464
Period size: 62 Copynumber: 7.0 Consensus size: 62
1423000 CCATTCAGTC
* *
1423010 TCCTTTCAAAGCCCACACAAGTTGGTGGCACCCTTTAGTCCTCAAAAAGCAGGATGCCTTTT
1 TCCTTTCAAAGCCCACACGAGTTGATGGCACCCTTTAGTCCTCAAAAAGCAGGATGCCTTTT
* * * * * * *
1423072 TCATTTAAAAGCTCACACGAGTTCATGGCACCCTTTATTCCTTAAAATGCAGGATGCCTTTT
1 TCCTTTCAAAGCCCACACGAGTTGATGGCACCCTTTAGTCCTCAAAAAGCAGGATGCCTTTT
* * * * * * * * * * **
1423134 TCGTTTAAAAACCCACATTG-GTTGGTGG-TCCATTTTGTCCTGAAAGAGCAGGACACCTTTT
1 TCCTTTCAAAGCCCACA-CGAGTTGATGGCACCCTTTAGTCCTCAAAAAGCAGGATGCCTTTT
* * * * * * **
1423195 TCTTTTCAAAGCCCGCAC-ATGTTGTTGGCACCCTTTAGTCCTCAAAGAGCAAGACGTATTTT
1 TCCTTTCAAAGCCCACACGA-GTTGATGGCACCCTTTAGTCCTCAAAAAGCAGGATGCCTTTT
* * *
1423257 TCTTTTCAAAGCCCACA-GAAGTTGATGGGACCCTTTAGTCCTCAAATAGCAGGATGCCTTTT
1 TCCTTTCAAAGCCCACACG-AGTTGATGGCACCCTTTAGTCCTCAAAAAGCAGGATGCCTTTT
* * * *
1423319 TCCTTTCGAAGCCCGCACGAGTTGGTGGCACCCTTCAGTCCTCAAAAAGCAGGATGCCTTTT
1 TCCTTTCAAAGCCCACACGAGTTGATGGCACCCTTTAGTCCTCAAAAAGCAGGATGCCTTTT
*
1423381 TCCTTTCAAAGCCCACACGAGTT-AGTGGCACCCTTCAGTCCTCAAAAAGCAGGATGCCTTTT
1 TCCTTTCAAAGCCCACACGAGTTGA-TGGCACCCTTTAGTCCTCAAAAAGCAGGATGCCTTTT
1423443 T
1 T
1423444 GAGTGGCACC
Statistics
Matches: 308, Mismatches: 56, Indels: 16
0.81 0.15 0.04
Matches are distributed among these distances:
61 44 0.14
62 261 0.85
63 3 0.01
ACGTcount: A:0.25, C:0.26, G:0.19, T:0.30
Consensus pattern (62 bp):
TCCTTTCAAAGCCCACACGAGTTGATGGCACCCTTTAGTCCTCAAAAAGCAGGATGCCTTTT
Found at i:1423449 original size:41 final size:41
Alignment explanation
Indices: 1423404--1423484 Score: 117
Period size: 41 Copynumber: 2.0 Consensus size: 41
1423394 CACACGAGTT
* *
1423404 AGTGGCACCCTTCAGTCCTCAAAAAGCAGGATGCCTTTTTG
1 AGTGGCACCCTTCAGTCCGCAAAAAGCAAGATGCCTTTTTG
* * *
1423445 AGTGGCACCCTTTAGTCCGGAAAGAGCAAGATGCCTTTTT
1 AGTGGCACCCTTCAGTCCGCAAAAAGCAAGATGCCTTTTT
1423485 CCTTTCAAAG
Statistics
Matches: 35, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
41 35 1.00
ACGTcount: A:0.25, C:0.25, G:0.23, T:0.27
Consensus pattern (41 bp):
AGTGGCACCCTTCAGTCCGCAAAAAGCAAGATGCCTTTTTG
Found at i:1423545 original size:61 final size:62
Alignment explanation
Indices: 1423446--1423731 Score: 400
Period size: 62 Copynumber: 4.6 Consensus size: 62
1423436 GCCTTTTTGA
**
1423446 GTGGCACCCTTTAGTCCGGAAAGAGCAAGATGCCTTTTTCCTTTCAAAGCCCACAC-AGTTG
1 GTGGCACCCTTTAGTCCTCAAAGAGCAAGATGCCTTTTTCCTTTCAAAGCCCACACGAGTTG
* * ** *
1423507 GTGGCACCCTTTAATCCTCAAAGAGCAAGACGTATTTTTCCTTTCAAAGCCCATA-GAAGTTG
1 GTGGCACCCTTTAGTCCTCAAAGAGCAAGATGCCTTTTTCCTTTCAAAGCCCACACG-AGTTG
* *
1423569 GTGGCACCCTTTAGTTCTCAAAGAG-AAGGATGCCTTTTTCCTTTCAAAGCCCGCACGAGTTG
1 GTGGCACCCTTTAGTCCTCAAAGAGCAA-GATGCCTTTTTCCTTTCAAAGCCCACACGAGTTG
* * * *
1423631 GTGGCACTCTTTAGTCCTCAAAAAGCAGGATGCCTTTTTCCTTTCAAAGCCCACACGAATTG
1 GTGGCACCCTTTAGTCCTCAAAGAGCAAGATGCCTTTTTCCTTTCAAAGCCCACACGAGTTG
1423693 GTGGCACCCTTTAGTCCTCAAAGAGC-AGCATGCCTTTTT
1 GTGGCACCCTTTAGTCCTCAAAGAGCAAG-ATGCCTTTTT
1423732 AAGTGGCACC
Statistics
Matches: 196, Mismatches: 23, Indels: 11
0.85 0.10 0.05
Matches are distributed among these distances:
61 51 0.26
62 143 0.73
63 2 0.01
ACGTcount: A:0.25, C:0.27, G:0.20, T:0.29
Consensus pattern (62 bp):
GTGGCACCCTTTAGTCCTCAAAGAGCAAGATGCCTTTTTCCTTTCAAAGCCCACACGAGTTG
Found at i:1423558 original size:164 final size:164
Alignment explanation
Indices: 1423278--1423607 Score: 448
Period size: 164 Copynumber: 2.0 Consensus size: 164
1423268 CCCACAGAAG
* * * * * *
1423278 TTGATGGGACCCTTTAGTCCTCAAATAGCAGGATGCCTTTTTCCTTTCGAAGCCCGCACGAGTTG
1 TTGATGGCACCCTTTAGTCCGCAAAGAGCAAGATGCCTTTTTCCTTTCAAAGCCCACACGAGTTG
* * * *
1423343 GTGGCACCCTTCAGTCCTCAAAAAGCAGGATGCCTTTTTCCTTTCAAAGCCCACACG-AGTTAGT
66 GTGGCACCCTTCAATCCTCAAAAAGCAAGACGCATTTTTCCTTTCAAAGCCCACA-GAAGTTAGT
*
1423407 GGCACCCTTCAGTCCTCAAAAAGCAGGATGCCTTT
130 GGCACCCTTCAGTCCTCAAAAAGAAGGATGCCTTT
*
1423442 TTGAGTGGCACCCTTTAGTCCGGAAAGAGCAAGATGCCTTTTTCCTTTCAAAGCCCACAC-AGTT
1 TTGA-TGGCACCCTTTAGTCCGCAAAGAGCAAGATGCCTTTTTCCTTTCAAAGCCCACACGAGTT
* * * * *
1423506 GGTGGCACCCTTTAATCCTCAAAGAGCAAGACGTATTTTTCCTTTCAAAGCCCATAGAAGTTGGT
65 GGTGGCACCCTTCAATCCTCAAAAAGCAAGACGCATTTTTCCTTTCAAAGCCCACAGAAGTTAGT
* * *
1423571 GGCACCCTTTAGTTCTCAAAGAGAAGGATGCCTTT
130 GGCACCCTTCAGTCCTCAAAAAGAAGGATGCCTTT
1423606 TT
1 TT
1423608 CCTTTCAAAG
Statistics
Matches: 144, Mismatches: 20, Indels: 4
0.86 0.12 0.02
Matches are distributed among these distances:
163 1 0.01
164 95 0.66
165 48 0.33
ACGTcount: A:0.25, C:0.26, G:0.21, T:0.28
Consensus pattern (164 bp):
TTGATGGCACCCTTTAGTCCGCAAAGAGCAAGATGCCTTTTTCCTTTCAAAGCCCACACGAGTTG
GTGGCACCCTTCAATCCTCAAAAAGCAAGACGCATTTTTCCTTTCAAAGCCCACAGAAGTTAGTG
GCACCCTTCAGTCCTCAAAAAGAAGGATGCCTTT
Found at i:1423615 original size:226 final size:227
Alignment explanation
Indices: 1423220--1423669 Score: 643
Period size: 226 Copynumber: 2.0 Consensus size: 227
1423210 CACATGTTGT
* * *
1423220 TGGCACCCTTTAGTCCTCAAAGAGCAAGACGTATTTTTCTTTTCAAAGCCCACAGAAGTTGATGG
1 TGGCACCCTTTAGTCCGCAAAGAGCAAGACGCATTTTTCCTTTCAAAGCCCACAGAAGTTGATGG
* * * * * * * *
1423285 GACCCTTTAGTCCTCAAATAGCAGGATGCCTTTTTCCTTTCGAAGCCCGCACGAGTTGGTGGCAC
66 CACCCTTTAATCCTCAAAGAGCAAGACGCATTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCAC
*
1423350 CCTTCAGTCCTCAAAAAGCAGGATGCCTTTTTCCTTTCAAAGCCCACACGAGTTAGTGGCACCCT
131 CCTTCAGTCCTCAAAAAGAAGGATGCCTTTTTCCTTTCAAAGCCCACACGAGTTAGTGGCACCCT
1423415 TCAGTCCTCAAAAAGCAGGATGCCTTTTTGAG
196 TCAGTCCTCAAAAAGCAGGATGCCTTTTTGAG
* * * * *
1423447 TGGCACCCTTTAGTCCGGAAAGAGCAAGATGCCTTTTTCCTTTCAAAGCCCACA-CAGTTGGTGG
1 TGGCACCCTTTAGTCCGCAAAGAGCAAGACGCATTTTTCCTTTCAAAGCCCACAGAAGTTGATGG
* *
1423511 CACCCTTTAATCCTCAAAGAGCAAGACGTATTTTTCCTTTCAAAGCCCATA-GAAGTTGGTGGCA
66 CACCCTTTAATCCTCAAAGAGCAAGACGCATTTTTCCTTTCAAAGCCCACACG-AGTTGGTGGCA
* * * * * *
1423575 CCCTTTAGTTCTCAAAGAGAAGGATGCCTTTTTCCTTTCAAAGCCCGCACGAGTTGGTGGCACTC
130 CCCTTCAGTCCTCAAAAAGAAGGATGCCTTTTTCCTTTCAAAGCCCACACGAGTTAGTGGCACCC
*
1423640 TTTAGTCCTCAAAAAGCAGGATGCCTTTTT
195 TTCAGTCCTCAAAAAGCAGGATGCCTTTTT
1423670 CCTTTCAAAG
Statistics
Matches: 196, Mismatches: 26, Indels: 3
0.87 0.12 0.01
Matches are distributed among these distances:
225 1 0.01
226 147 0.75
227 48 0.24
ACGTcount: A:0.25, C:0.26, G:0.20, T:0.28
Consensus pattern (227 bp):
TGGCACCCTTTAGTCCGCAAAGAGCAAGACGCATTTTTCCTTTCAAAGCCCACAGAAGTTGATGG
CACCCTTTAATCCTCAAAGAGCAAGACGCATTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCAC
CCTTCAGTCCTCAAAAAGAAGGATGCCTTTTTCCTTTCAAAGCCCACACGAGTTAGTGGCACCCT
TCAGTCCTCAAAAAGCAGGATGCCTTTTTGAG
Found at i:1423756 original size:165 final size:165
Alignment explanation
Indices: 1423569--1424060 Score: 484
Period size: 165 Copynumber: 3.0 Consensus size: 165
1423559 ATAGAAGTTG
* * * *
1423569 GTGGCACCCTTTAGTTCTCAAAGAGAAGGATGCCTTTTTCCTTTCAAAGCCCGCACGAGTTGGTG
1 GTGGCACCCTTTAGTCCTCAAAGAGAAGGACGCCTTTTTCCTTTCAAAGCCCACACAAGTTGGTG
1423634 GCA-CTCTTTAGTCCTCAAAAAGCAGGATGCCTTTTTCCTTTCAAAGCCCACACGAA-TTGGTGG
66 GCATC-CTTTAGTCCTCAAAAAGCAGGATGCCTTTTTCCTTTCAAAGCCCACAC-AAGTTGGTGG
1423697 CACCCTTTAGTCCTCAAAGAGCAGCATGCCTTTTTAA
129 CACCCTTTAGTCCTCAAAGAGCAGCATGCCTTTTTAA
* * * *
1423734 GTGGCACCCTTTAGTCCTCAAAGAGCAGGCCGCCTTTTTCTTTTCAAATCCCACACAAGTTGGTG
1 GTGGCACCCTTTAGTCCTCAAAGAGAAGGACGCCTTTTTCCTTTCAAAGCCCACACAAGTTGGTG
* * *
1423799 GCATCCTTTAGTCCTCAATAATCAGGATGCCTTTTTCCTTTCAAAGCCCACACAAGTTTGTGGCA
66 GCATCCTTTAGTCCTCAAAAAGCAGGATGCCTTTTTCCTTTCAAAGCCCACACAAGTTGGTGGCA
* * * *
1423864 CCCTTTAGTCCTTAAAGTGCAAG-ATGTCTTTTT-C
131 CCCTTTAGTCCTCAAAGAGC-AGCATGCCTTTTTAA
* ** *** * * * *
1423898 CTTTCAGCGCCCACACGT-GT---TG-G-TGGCAC-CCTTCAGTCTCCTTTCAAAGCCCACACAA
1 GTGGCA-C-CCTTTA-GTCCTCAAAGAGAAGG-ACGCCTT---TTTCCTTTCAAAGCCCACACAA
* * * * * *
1423956 GTTGGTGGCACCCTTTAGTCCTTAAAGAGCAGGATGCCTTTCTCCTTTCAAAGCCAACACGAGTT
59 GTTGGTGGCATCCTTTAGTCCTCAAAAAGCAGGATGCCTTTTTCCTTTCAAAGCCCACACAAGTT
* * * * **
1424021 GGTGACATCTTTTAGTCCTCAAAAAGCAGGTTGCCTTTTT
124 GGTGGCACCCTTTAGTCCTCAAAGAGCAGCATGCCTTTTT
1424061 CGTTTCAAAC
Statistics
Matches: 271, Mismatches: 45, Indels: 23
0.80 0.13 0.07
Matches are distributed among these distances:
161 6 0.02
162 2 0.01
163 3 0.01
164 109 0.40
165 142 0.52
166 7 0.03
167 2 0.01
ACGTcount: A:0.23, C:0.28, G:0.19, T:0.30
Consensus pattern (165 bp):
GTGGCACCCTTTAGTCCTCAAAGAGAAGGACGCCTTTTTCCTTTCAAAGCCCACACAAGTTGGTG
GCATCCTTTAGTCCTCAAAAAGCAGGATGCCTTTTTCCTTTCAAAGCCCACACAAGTTGGTGGCA
CCCTTTAGTCCTCAAAGAGCAGCATGCCTTTTTAA
Found at i:1423769 original size:41 final size:41
Alignment explanation
Indices: 1423693--1423772 Score: 135
Period size: 41 Copynumber: 2.0 Consensus size: 41
1423683 ACACGAATTG
*
1423693 GTGGCACCCTTTAGTCCTCAAAGAGCAGCATGCCTTTTTAA
1 GTGGCACCCTTTAGTCCTCAAAGAGCAGCACGCCTTTTTAA
1423734 GTGGCACCCTTTAGTCCTCAAAGAGCAGGC-CGCCTTTTT
1 GTGGCACCCTTTAGTCCTCAAAGAGCA-GCACGCCTTTTT
1423773 CTTTTCAAAT
Statistics
Matches: 37, Mismatches: 1, Indels: 2
0.93 0.03 0.05
Matches are distributed among these distances:
41 35 0.95
42 2 0.05
ACGTcount: A:0.21, C:0.29, G:0.21, T:0.29
Consensus pattern (41 bp):
GTGGCACCCTTTAGTCCTCAAAGAGCAGCACGCCTTTTTAA
Found at i:1423807 original size:62 final size:62
Alignment explanation
Indices: 1423734--1423935 Score: 235
Period size: 62 Copynumber: 3.3 Consensus size: 62
1423724 GCCTTTTTAA
* * *
1423734 GTGGCACCCTTTAGTCCTCAAAGAGCAGGCCGCCTTTTTCTTTTCAAATCCCACACAAGTTG
1 GTGGCACCCTTTAGTCCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACAAGTTG
* * * *
1423796 GTGGCATCCTTTAGTCCTCAATA-ATCAGGATGCCTTTTTCCTTTCAAAGCCCACACAAGTTT
1 GTGGCACCCTTTAGTCCTCAA-AGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACAAGTTG
* * * * * ** **
1423858 GTGGCACCCTTTAGTCCTTAAAGTGCAAGATGTCTTTTTCCTTTCAGCGCCCACACGTGTTG
1 GTGGCACCCTTTAGTCCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACAAGTTG
*
1423920 GTGGCACCCTTCAGTC
1 GTGGCACCCTTTAGTC
1423936 TCCTTTCAAA
Statistics
Matches: 119, Mismatches: 19, Indels: 4
0.84 0.13 0.03
Matches are distributed among these distances:
61 1 0.01
62 117 0.98
63 1 0.01
ACGTcount: A:0.21, C:0.29, G:0.18, T:0.32
Consensus pattern (62 bp):
GTGGCACCCTTTAGTCCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACAAGTTG
Found at i:1423810 original size:103 final size:103
Alignment explanation
Indices: 1423631--1423834 Score: 295
Period size: 103 Copynumber: 2.0 Consensus size: 103
1423621 GCACGAGTTG
* *
1423631 GTGGCACTCTTTAGTCCTCAAAAAGCAGGATGCCTTTTTCCTTTCAAAGCCCACACGAATTGGTG
1 GTGGCACCCTTTAGTCCTCAAAAAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGAATTGGTG
1423696 GCACCCTTTAGTCCTCAA-AGAGCAGCATGCCTTTTTAA
66 GCACCCTTTAGTCCTCAATA-AGCAGCATGCCTTTTTAA
* * * *
1423734 GTGGCACCCTTTAGTCCTCAAAGAGCAGGCCGCCTTTTTCTTTTCAAATCCCACAC-AAGTTGGT
1 GTGGCACCCTTTAGTCCTCAAAAAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGAA-TTGGT
* * *
1423798 GGCATCCTTTAGTCCTCAATAATCAGGATGCCTTTTT
65 GGCACCCTTTAGTCCTCAATAAGCAGCATGCCTTTTT
1423835 CCTTTCAAAG
Statistics
Matches: 90, Mismatches: 9, Indels: 4
0.87 0.09 0.04
Matches are distributed among these distances:
102 2 0.02
103 87 0.97
104 1 0.01
ACGTcount: A:0.24, C:0.27, G:0.18, T:0.31
Consensus pattern (103 bp):
GTGGCACCCTTTAGTCCTCAAAAAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGAATTGGTG
GCACCCTTTAGTCCTCAATAAGCAGCATGCCTTTTTAA
Found at i:1423836 original size:227 final size:224
Alignment explanation
Indices: 1423286--1424183 Score: 739
Period size: 226 Copynumber: 4.0 Consensus size: 224
1423276 AGTTGATGGG
* * * * * *
1423286 ACCCTTTAGTCCTCAAATAGCAGGATGCCTTTTTCCTTTCGAAGCCCGCACGAGTTGGTGGCACC
1 ACCCTTTAGTCCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACAAGTTGGTGGCATC
* * *
1423351 CTTCAGTCCTCAAAAAGCAGGATGCCTTTTTCCTTTCAAAGCCCACACGAGTTAGTGGCACCCTT
66 CTTTAGTCCTC-AAAAGCAGGATGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACTCTT
* * *** * *** * *
1423416 CAGTCCTCAAAAAGCAGGATGCCTTTTT-GAGT---GGCACC-CTTTAGTCCGGAAAGAGCAAGA
130 TAGTCCTCAAAGAGCAGGATGCCTTTTTCCTTTCAAAGC-CCACACGAGT-TGG--TG-GC---A
* * ** ** *
1423476 TGCCTTT-TTCCTTTCAAAGCCCA-CA--C-AGTTGGTGGC
187 -CCCTTTAGTCC--TCAAAGAGCAGCAGCCTTTTTAGTGGC
* * ** * * *
1423512 ACCCTTTAATCCTCAAAGAGCAAGACGTATTTTTCCTTTCAAAGCCCATAGAAGTTGGTGGCACC
1 ACCCTTTAGTCCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACAAGTTGGTGGCATC
* * *
1423577 CTTTAGTTCTCAAAGAGAAGGATGCCTTTTTCCTTTCAAAGCCCGCACGAGTTGGTGGCACTCTT
66 CTTTAGTCCTCAAA-AGCAGGATGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACTCTT
* *
1423642 TAGTCCTCAAAAAGCAGGATGCCTTTTTCCTTTCAAAGCCCACACGAATTGGTGGCACCCTTTAG
130 TAGTCCTCAAAGAGCAGGATGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAG
1423707 TCCTCAAAGAGCAGCATGCCTTTTTAAGTGGC
195 TCCTCAAAGAGCAGCA-GCCTTTTT-AGTGGC
* * *
1423739 ACCCTTTAGTCCTCAAAGAGCAGGCCGCCTTTTTCTTTTCAAATCCCACACAAGTTGGTGGCATC
1 ACCCTTTAGTCCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACAAGTTGGTGGCATC
* * * *
1423804 CTTTAGTCCTCAATAATCAGGATGCCTTTTTCCTTTCAAAGCCCACACAAGTTTGTGGCACCCTT
66 CTTTAGTCCTCAA-AAGCAGGATGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACTCTT
* * * * ** * *
1423869 TAGTCCTTAAAGTGCAAGATGTCTTTTTCCTTTCAGCGCCCACACGTGTTGGTGGCACCCTTCAG
130 TAGTCCTCAAAGAGCAGGATGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAG
** *** *
1423934 TCTCCTTTCAAAGCCCA-CA--CAAGTTGGTGGC
195 --TCC--TCAAAGAGCAGCAGCCTTTTTAGTGGC
* * * * * *
1423965 ACCCTTTAGTCCTTAAAGAGCAGGATGCCTTTCTCCTTTCAAAGCCAACACGAGTTGGTGACATC
1 ACCCTTTAGTCCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACAAGTTGGTGGCATC
* * * * *
1424030 TTTTAGTCCTCAAAAAGCAGGTTGCCTTTTTCGTTTCAAA-CCTACACGGGTTGGTGGC-CTCAT
66 CTTTAGTCCTC-AAAAGCAGGATGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACTC-T
** * * * *
1424093 TTTTTCCTCAAAGAGTAGGACT-CCTTTTTCTTTTCAAAGCCTACACGAGTTTGTGGCACCCTTT
129 TTAGTCCTCAAAGAGCAGGA-TGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTT
* * * *
1424157 AATTCTGAAAGAGCAGGACGCCTTTTT
193 AGTCCTCAAAGAGCAGCA-GCCTTTTT
1424184 CTTTTCAAAG
Statistics
Matches: 538, Mismatches: 109, Indels: 51
0.77 0.16 0.07
Matches are distributed among these distances:
221 15 0.03
222 8 0.01
223 6 0.01
224 2 0.00
225 71 0.13
226 235 0.44
227 178 0.33
228 1 0.00
229 7 0.01
230 7 0.01
231 8 0.01
ACGTcount: A:0.23, C:0.27, G:0.19, T:0.30
Consensus pattern (224 bp):
ACCCTTTAGTCCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACAAGTTGGTGGCATC
CTTTAGTCCTCAAAAGCAGGATGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACTCTTT
AGTCCTCAAAGAGCAGGATGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGT
CCTCAAAGAGCAGCAGCCTTTTTAGTGGC
Found at i:1423951 original size:40 final size:40
Alignment explanation
Indices: 1423896--1423975 Score: 115
Period size: 40 Copynumber: 2.0 Consensus size: 40
1423886 GATGTCTTTT
** **
1423896 TCCTTTCAGCGCCCACACGTGTTGGTGGCACCCTTCAGTC
1 TCCTTTCAAAGCCCACACAAGTTGGTGGCACCCTTCAGTC
*
1423936 TCCTTTCAAAGCCCACACAAGTTGGTGGCACCCTTTAGTC
1 TCCTTTCAAAGCCCACACAAGTTGGTGGCACCCTTCAGTC
1423976 CTTAAAGAGC
Statistics
Matches: 35, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
40 35 1.00
ACGTcount: A:0.17, C:0.35, G:0.20, T:0.28
Consensus pattern (40 bp):
TCCTTTCAAAGCCCACACAAGTTGGTGGCACCCTTCAGTC
Found at i:1424016 original size:102 final size:102
Alignment explanation
Indices: 1423834--1424024 Score: 301
Period size: 102 Copynumber: 1.9 Consensus size: 102
1423824 GATGCCTTTT
* * * *
1423834 TCCTTTCAAAGCCCACACAAGTTTGTGGCACCCTTTAGTCCTTAAAGTGCAAGATGTCTTTTTCC
1 TCCTTTCAAAGCCCACACAAGTTGGTGGCACCCTTTAGTCCTTAAAGAGCAAGATGCCTTTCTCC
** * *
1423899 TTTCAGCGCCCACACGTGTTGGTGGCACCCTTCAGTC
66 TTTCAAAGCCAACACGAGTTGGTGGCACCCTTCAGTC
*
1423936 TCCTTTCAAAGCCCACACAAGTTGGTGGCACCCTTTAGTCCTTAAAGAGCAGGATGCCTTTCTCC
1 TCCTTTCAAAGCCCACACAAGTTGGTGGCACCCTTTAGTCCTTAAAGAGCAAGATGCCTTTCTCC
1424001 TTTCAAAGCCAACACGAGTTGGTG
66 TTTCAAAGCCAACACGAGTTGGTG
1424025 ACATCTTTTA
Statistics
Matches: 80, Mismatches: 9, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
102 80 1.00
ACGTcount: A:0.22, C:0.29, G:0.19, T:0.29
Consensus pattern (102 bp):
TCCTTTCAAAGCCCACACAAGTTGGTGGCACCCTTTAGTCCTTAAAGAGCAAGATGCCTTTCTCC
TTTCAAAGCCAACACGAGTTGGTGGCACCCTTCAGTC
Found at i:1424035 original size:62 final size:62
Alignment explanation
Indices: 1423936--1424276 Score: 382
Period size: 62 Copynumber: 5.5 Consensus size: 62
1423926 CCCTTCAGTC
* * *
1423936 TCCTTTCAAAGCCCACACAAGTTGGTGGCACCCTTTAGTCCTTAAAGAGCAGGATGCCTTTC
1 TCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTT
* * * * * *
1423998 TCCTTTCAAAGCCAACACGAGTTGGTGACATCTTTTAGTCCTCAAAAAGCAGGTTGCCTTTT
1 TCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTT
* * * * ** *
1424060 TCGTTTCAAA-CCTACACGGGTTGGTGGC-CTCATTTTTTCCTCAAAGAGTAGGACT-CCTTTT
1 TCCTTTCAAAGCCCACACGAGTTGGTGGCAC-CCTTTAGTCCTCAAAGAGCAGGA-TGCCTTTT
* * * * * * *
1424121 TCTTTTCAAAGCCTACACGAGTTTGTGGCACCCTTTAATTCTGAAAGAGCAGGACGCCTTTT
1 TCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTT
* * * * *
1424183 TCTTTTCAAAGCCCACACGAGTTTGTGACACCCTTTAGTCCTCAAAGAGCAAGATGCCCTTT
1 TCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTT
*
1424245 TCCTTTCAATGCCCACACGAGTTGGTGGCACC
1 TCCTTTCAAAGCCCACACGAGTTGGTGGCACC
1424277 ATTCAGTCTC
Statistics
Matches: 232, Mismatches: 42, Indels: 10
0.82 0.15 0.04
Matches are distributed among these distances:
61 47 0.20
62 184 0.79
63 1 0.00
ACGTcount: A:0.23, C:0.27, G:0.19, T:0.31
Consensus pattern (62 bp):
TCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTT
Done.