Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold215
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 2124891
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
File 11 of 16
Found at i:1424180 original size:123 final size:124
Alignment explanation
Indices: 1423939--1424276 Score: 367
Period size: 123 Copynumber: 2.7 Consensus size: 124
1423929 TTCAGTCTCC
* * * * *
1423939 TTTCAAAGCCCACACAAGTTGGTGGCACCCTTTAGTCCTTAAAGAGCAGGATGCCTTTCTCCTTT
1 TTTCAAAGCCCACACGAGTTGGTGACACCATTTAGTCCTCAAAGAGCAGGATGCCTTTTTCCTTT
* * * * **
1424004 CAAAGCCAACACGAGTTGGTGACATCTTTTAGTCCTCAAAAAGCAGGTTGCCTTTTTCG
66 CAAAGCCAACACGAGTTGGTGGCACCCTTTAATCCTCAAAAAGCAGGACGCCTTTTTCG
* * * ** * *
1424063 TTTCAAA-CCTACACGGGTTGGTGGC-CTCATTTTTTCCTCAAAGAGTAGGACT-CCTTTTTCTT
1 TTTCAAAGCCCACACGAGTTGGTGACAC-CATTTAGTCCTCAAAGAGCAGGA-TGCCTTTTTCCT
* * * * * *
1424125 TTCAAAGCCTACACGAGTTTGTGGCACCCTTTAATTCTGAAAGAGCAGGACGCCTTTTTCT
64 TTCAAAGCCAACACGAGTTGGTGGCACCCTTTAATCCTCAAAAAGCAGGACGCCTTTTTCG
* * * *
1424186 TTTCAAAGCCCACACGAGTTTGTGACACCCTTTAGTCCTCAAAGAGCAAGATGCCCTTTTCCTTT
1 TTTCAAAGCCCACACGAGTTGGTGACACCATTTAGTCCTCAAAGAGCAGGATGCCTTTTTCCTTT
* *
1424251 CAATGCCCACACGAGTTGGTGGCACC
66 CAAAGCCAACACGAGTTGGTGGCACC
1424277 ATTCAGTCTC
Statistics
Matches: 173, Mismatches: 36, Indels: 10
0.79 0.16 0.05
Matches are distributed among these distances:
122 1 0.01
123 98 0.57
124 73 0.42
125 1 0.01
ACGTcount: A:0.24, C:0.27, G:0.19, T:0.31
Consensus pattern (124 bp):
TTTCAAAGCCCACACGAGTTGGTGACACCATTTAGTCCTCAAAGAGCAGGATGCCTTTTTCCTTT
CAAAGCCAACACGAGTTGGTGGCACCCTTTAATCCTCAAAAAGCAGGACGCCTTTTTCG
Found at i:1424196 original size:349 final size:348
Alignment explanation
Indices: 1423747--1424633 Score: 1169
Period size: 349 Copynumber: 2.5 Consensus size: 348
1423737 GCACCCTTTA
* * * * *
1423747 GTCCTCAAAGAGCAGGCCGCCTTTTTCTTTTCAAATCCCACACAAGTTGGTGGCATCCTTTAGTC
1 GTCCTCAAAGAGCAGGACACCTTTTTCTTTTCAAAGCCCACAC-AGTTTGTGGCACCCTTTAGTC
* * *
1423812 CTCAATA-ATCAGGATGCCTTTTTCCTTTCAAAGCCCACACAAGTTTGTGGCACCCTTTAGTCCT
65 CTCAA-AGAGCAGGACGCCTTTTTCTTTTCAAAGCCCACACAAGTTTGTGGCACCCTTTAGTCCT
* * * *
1423876 TAAAGTGCAAGATGTCTTTTTCCTTTCAGCGCCCACACGTGTTGGTGGCACCCTTCAGTCTCCTT
129 CAAAGTGCAAGATGCCTTTTTCCTTTCAGAGCCCACACGAGTTGGTGGCACCCTTCAGTCTCCTT
* *
1423941 TCAAAGCCCACACAAGTTGGTGGCACCCTTTAGTCCTTAAAGAGCAGGATGCCTTTCTCCTTTCA
194 TCAAAGCCCACACAAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTCTCATTTCA
** * * * *
1424006 AAGC-CAACACGAGTTGGTGACATCTTTTAGTCCTCAAAAAGCAGGTTGCCTTTTTCGTTT-CAA
259 AAGCTC-ACACGAGTTCATGACACCCTTTAGTCCTCAAAAAGCAGGATGCCTTTTTCGTTTAAAA
*
1424069 ACCTACACGGGTTGGTGGCCTCATTTT
323 ACCCACACGGGTTGGTGGCC-CATTTT
* * * * * *
1424096 TTCCTCAAAGAGTAGGACTCCTTTTTCTTTTCAAAGCCTACACGAGTTTGTGGCACCCTTTAATT
1 GTCCTCAAAGAGCAGGACACCTTTTTCTTTTCAAAGCCCACAC-AGTTTGTGGCACCCTTTAGTC
* * *
1424161 CTGAAAGAGCAGGACGCCTTTTTCTTTTCAAAGCCCACACGAGTTTGTGACACCCTTTAGTCCTC
65 CTCAAAGAGCAGGACGCCTTTTTCTTTTCAAAGCCCACACAAGTTTGTGGCACCCTTTAGTCCTC
* * *
1424226 AAAGAGCAAGATGCCCTTTTCCTTTCA-ATGCCCACACGAGTTGGTGGCACCATTCAGTCTCCTT
130 AAAGTGCAAGATGCCTTTTTCCTTTCAGA-GCCCACACGAGTTGGTGGCACCCTTCAGTCTCCTT
* *
1424290 TCAAAGCCCACACAAGTTGGTGGCACCCTTTAGTCCTCAAATAGCAGGATGCCTTTTTCATTTCA
194 TCAAAGCCCACACAAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTCTCATTTCA
* * *
1424355 AAGCTCACACGAGTTCATGGCACCCTTTAGTCCTTAAAATGCAGGATGCCTTTTTCGTTTAAAAA
259 AAGCTCACACGAGTTCATGACACCCTTTAGTCCTCAAAAAGCAGGATGCCTTTTTCGTTTAAAAA
** *
1424420 CCCACATTGGTTGGTGGTCCATTTT
324 CCCACACGGGTTGGTGGCCCATTTT
* *
1424445 GTCTTCAAAGAGCAGGACACCTTTTTCTTTTCAAAGCCCGCACA-TGTTGTTGGCACCCTTTAGT
1 GTCCTCAAAGAGCAGGACACCTTTTTCTTTTCAAAGCCCACACAGT-TTG-TGGCACCCTTTAGT
* ** * *
1424509 CCTCAAAGAGCAAGACGTATTTTTCTTTTCAAAGCCCACAGAAG-TTGATGGGACCCTTTAGTCC
64 CCTCAAAGAGCAGGACGCCTTTTTCTTTTCAAAGCCCACACAAGTTTG-TGGCACCCTTTAGTCC
* *
1424573 TCAAA-TAGCAGGATGCCTTTTTCCTTTC-GAAGCCCGCACGAGTTGGTGGCACCCTTCAGTC
128 TCAAAGT-GCAAGATGCCTTTTTCCTTTCAG-AGCCCACACGAGTTGGTGGCACCCTTCAGTC
1424634 CTCAAAAAGT
Statistics
Matches: 466, Mismatches: 62, Indels: 20
0.85 0.11 0.04
Matches are distributed among these distances:
347 1 0.00
348 8 0.02
349 437 0.94
350 20 0.04
ACGTcount: A:0.23, C:0.27, G:0.19, T:0.31
Consensus pattern (348 bp):
GTCCTCAAAGAGCAGGACACCTTTTTCTTTTCAAAGCCCACACAGTTTGTGGCACCCTTTAGTCC
TCAAAGAGCAGGACGCCTTTTTCTTTTCAAAGCCCACACAAGTTTGTGGCACCCTTTAGTCCTCA
AAGTGCAAGATGCCTTTTTCCTTTCAGAGCCCACACGAGTTGGTGGCACCCTTCAGTCTCCTTTC
AAAGCCCACACAAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTCTCATTTCAAA
GCTCACACGAGTTCATGACACCCTTTAGTCCTCAAAAAGCAGGATGCCTTTTTCGTTTAAAAACC
CACACGGGTTGGTGGCCCATTTT
Found at i:1424364 original size:102 final size:102
Alignment explanation
Indices: 1424186--1424378 Score: 287
Period size: 102 Copynumber: 1.9 Consensus size: 102
1424176 GCCTTTTTCT
* * *
1424186 TTTCAAAGCCCACACGAGTTTGTGACACCCTTTAGTCCTCAAAGAGCAAGATGCCCTTTTCCTTT
1 TTTCAAAGCCCACACAAGTTGGTGACACCCTTTAGTCCTCAAAGAGCAAGATGCCCTTTTCATTT
* **
1424251 CAATGCCCACACGAGTTGGTGGCACCATTCAGTCTCC
66 CAAAGCCCACACGAGTTCATGGCACCATTCAGTCTCC
* * * *
1424288 TTTCAAAGCCCACACAAGTTGGTGGCACCCTTTAGTCCTCAAATAGCAGGATGCCTTTTTCATTT
1 TTTCAAAGCCCACACAAGTTGGTGACACCCTTTAGTCCTCAAAGAGCAAGATGCCCTTTTCATTT
*
1424353 CAAAGCTCACACGAGTTCATGGCACC
66 CAAAGCCCACACGAGTTCATGGCACC
1424379 CTTTAGTCCT
Statistics
Matches: 80, Mismatches: 11, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
102 80 1.00
ACGTcount: A:0.25, C:0.30, G:0.18, T:0.27
Consensus pattern (102 bp):
TTTCAAAGCCCACACAAGTTGGTGACACCCTTTAGTCCTCAAAGAGCAAGATGCCCTTTTCATTT
CAAAGCCCACACGAGTTCATGGCACCATTCAGTCTCC
Found at i:1424385 original size:62 final size:62
Alignment explanation
Indices: 1424285--1424718 Score: 457
Period size: 62 Copynumber: 7.0 Consensus size: 62
1424275 CCATTCAGTC
* * *
1424285 TCCTTTCAAAGCCCACACAAGTTGGTGGCACCCTTTAGTCCTCAAATAGCAGGATGCCTTTT
1 TCCTTTCAAAGCCCACACGAGTTGATGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTT
* * * *
1424347 TCATTTCAAAGCTCACACGAGTTCATGGCACCCTTTAGTCCTTAAA-ATGCAGGATGCCTTTT
1 TCCTTTCAAAGCCCACACGAGTTGATGGCACCCTTTAGTCCTCAAAGA-GCAGGATGCCTTTT
* * * * * * * * * **
1424409 TCGTTTAAAAACCCACATTG-GTTGGTGG-TCCATTTTGTCTTCAAAGAGCAGGACACCTTTT
1 TCCTTTCAAAGCCCACA-CGAGTTGATGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTT
* * * * * **
1424470 TCTTTTCAAAGCCCGCAC-ATGTTGTTGGCACCCTTTAGTCCTCAAAGAGCAAGACGTATTTT
1 TCCTTTCAAAGCCCACACGA-GTTGATGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTT
* * *
1424532 TCTTTTCAAAGCCCACA-GAAGTTGATGGGACCCTTTAGTCCTCAAATAGCAGGATGCCTTTT
1 TCCTTTCAAAGCCCACACG-AGTTGATGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTT
* * * * * *
1424594 TCCTTTCGAAGCCCGCACGAGTTGGTGGCACCCTTCAGTCCTCAAAAAGTAGGATGCCTTTT
1 TCCTTTCAAAGCCCACACGAGTTGATGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTT
* *
1424656 TCCTTTCAAAGCCCACACGAGTT-AGTGGCACCTTTTAGTCCTCAAAGAGCAGCATGCCTTTT
1 TCCTTTCAAAGCCCACACGAGTTGA-TGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTT
1424718 T
1 T
1424719 AAGTGGCACC
Statistics
Matches: 304, Mismatches: 58, Indels: 20
0.80 0.15 0.05
Matches are distributed among these distances:
61 45 0.15
62 256 0.84
63 3 0.01
ACGTcount: A:0.24, C:0.26, G:0.19, T:0.31
Consensus pattern (62 bp):
TCCTTTCAAAGCCCACACGAGTTGATGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTT
Found at i:1424436 original size:164 final size:164
Alignment explanation
Indices: 1424124--1424425 Score: 408
Period size: 164 Copynumber: 1.8 Consensus size: 164
1424114 TCCTTTTTCT
* * * * * *
1424124 TTTCAAAGCCTACACGAGTTTGTGGCACCCTTTAATTCTGAAAGAGCAGGACGCCTTTTTCTTTT
1 TTTCAAAGCCCACACAAGTTGGTGGCACCCTTTAATCCTCAAAGAGCAGGACGCCTTTTTCATTT
** *
1424189 CAAAGCCCACACGAGTTTGTGACACCCTTTAGTCCTCAAAGAGCAAGATGCCCTTTTCCTTTCAA
66 CAAAGCCCACACGAGTTCATGACACCCTTTAGTCCTCAAAGAGCAAGATGCCCTTTTCCTTTAAA
**
1424254 TGCCCACACGAGTTGGTGGCACCATTCAGTCTCC
131 AACCCACACGAGTTGGTGGCACCATTCAGTCTCC
* * *
1424288 TTTCAAAGCCCACACAAGTTGGTGGCACCCTTTAGTCCTCAAATAGCAGGATGCCTTTTTCATTT
1 TTTCAAAGCCCACACAAGTTGGTGGCACCCTTTAATCCTCAAAGAGCAGGACGCCTTTTTCATTT
* * * * * *
1424353 CAAAGCTCACACGAGTTCATGGCACCCTTTAGTCCTTAAA-ATGCAGGATGCCTTTTTCGTTTAA
66 CAAAGCCCACACGAGTTCATGACACCCTTTAGTCCTCAAAGA-GCAAGATGCCCTTTTCCTTTAA
1424417 AAACCCACA
130 AAACCCACA
1424426 TTGGTTGGTG
Statistics
Matches: 117, Mismatches: 20, Indels: 2
0.84 0.14 0.01
Matches are distributed among these distances:
163 1 0.01
164 116 0.99
ACGTcount: A:0.25, C:0.28, G:0.17, T:0.29
Consensus pattern (164 bp):
TTTCAAAGCCCACACAAGTTGGTGGCACCCTTTAATCCTCAAAGAGCAGGACGCCTTTTTCATTT
CAAAGCCCACACGAGTTCATGACACCCTTTAGTCCTCAAAGAGCAAGATGCCCTTTTCCTTTAAA
AACCCACACGAGTTGGTGGCACCATTCAGTCTCC
Found at i:1424759 original size:349 final size:350
Alignment explanation
Indices: 1424372--1431842 Score: 1173
Period size: 349 Copynumber: 21.0 Consensus size: 350
1424362 CACGAGTTCA
* * * * **
1424372 TGGCACCCTTTAGTCCTTAAAATGCAGGATGCCTTTTTCGTTTAAAAACCCACATTGGTTGGTGG
1 TGGCACCCTTTAGTCCTCAAAATGCAAGACGCCTTTTTCCTTTAAAAACCCACA-CAGTTGGTGG
* * * * * * *
1424437 -TCCATTTTGTCTTCAAAGAGCAGGACACCTTTTTCTTTTCAAAGCCCGCAC-ATGTTGTTGGCA
65 CACCATTTAGTCCTCAAAGAGCAAGACACCTTTTTCATTTCAAAGCCCACACGA-GTTGCTGGCA
** * * *
1424500 CCCTTTAGTCCTCAAAGAGCAAGACGTATTTTTCTTTTCAAAGCCCACA-GAAGTTGATGGGACC
129 CCCTTTAGTCCTCAAAGAGCAAGACACATTTCTCCTTTCAAAGCCCACACG-AGTTGATGGCACC
* * * * * *
1424564 CTTTAGTCCTCAAATAGCAGGATGCCTTTTTCCTTTCGAAGCCCGCACGAGTTGGTGGCACCCTT
193 CTTTAGTCCTAAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACAAGTTGGTGGCACCCTT
* *
1424629 CAGTCCTCAAAAAGT-AGGATGCCTTTTTCCTTTCAAAGCCCACACGAGTTAGTGGCACCTTTTA
258 CAGTCCTCAAAAA-TCAGGATGCCTTTTTCCTTTCAAAGCCCACACAAGTTAGTGGCACCCTTTA
1424693 GTCCTCAAAGAGCAGCATGCCTTTTTAAG
322 GTCCTCAAAGAGCAGCATGCCTTTTTAAG
** *
1424722 TGGCACCCTTTAGTCCTCAAAGA-GCAAGACG-CTTTTTCCTTTCGAAGCCCACACAGTTGGTGG
1 TGGCACCCTTTAGTCCTCAAA-ATGCAAGACGCCTTTTTCCTTTAAAAACCCACACAGTTGGTGG
* *
1424785 CACCCTTTAGTCCTCAAAGAGCAAGACACCTTTTTCATTTCAAAGCCTACACGAGTTGCTGGCAC
65 CACCATTTAGTCCTCAAAGAGCAAGACACCTTTTTCATTTCAAAGCCCACACGAGTTGCTGGCAC
* * * * *
1424850 CCTTTAGTCGTCGAAGAGTAAGACACCTTTCTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCT
130 CCTTTAGTCCTCAAAGAGCAAGACACATTTCTCCTTTCAAAGCCCACACGAGTTGATGGCACCCT
* * * *
1424915 TTAGTTCTAAAAGAGCAGGCCGCCTTTTTCTTTTCAAAGCCCACACAAGTTGGTGGCACCCTTTA
195 TTAGTCCTAAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACAAGTTGGTGGCACCCTTCA
*
1424980 GTCCTCAAAAATCAGGATGCCTTTTTCCTTTCAAAGCCCACACAAGTTTGTGGCACCCTTTAGTC
260 GTCCTCAAAAATCAGGATGCCTTTTTCCTTTCAAAGCCCACACAAGTTAGTGGCACCCTTTAGTC
* * **
1425045 CTTAAAGAGCAAG-ATGTCTTTTT-CC
325 CTCAAAGAGC-AGCATGCCTTTTTAAG
** *** * *** * * *
1425070 TTTCAGCGCCCACACGT-GT-----TGGTGGCAC-CCTTCAGTCTCCTTTCAAAGCCCACACAAG
1 TGGCA-C-CCTTTA-GTCCTCAAAATGCAAG-ACGCCTT---TTTCCTTTAAAAACCCACAC-AG
* * ** * * *
1425128 TTGGTGGCACGC-TTCAGTCCTCAAAGAGCAGGATGCCTTTCTCCTTTCAAAGCCAACACGAGTT
58 TTGGTGGCAC-CATTTAGTCCTCAAAGAGCAAGACACCTTTTTCATTTCAAAGCCCACACGAGTT
* * * * * * *** * * * * * *
1425192 GGTGACATCTTTTAGTCCTCAAAAAGCAGGTTGCCTTTTTCGTTTCAAA-CCTACACGGGTTGGT
122 GCTGGCACCCTTTAGTCCTCAAAGAGCAAGACACATTTCTCCTTTCAAAGCCCACACGAGTTGAT
* ** * * * * * * *
1425256 GGC-CTCATTTTTTCCTCAAAGAGTAGGACTCCTTTTTCTTTTCAAAGCCTACACGAGTTTGTGG
187 GGCAC-CCTTTAGTCCTAAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACAAGTTGGTGG
* * * * * * * * * * *
1425320 CACCCTTTAATTCTGAAAGAGCAGGACGCCTTTTTCTTTTCAAAGCCCACACGAGTTTGTGACAC
251 CACCCTTCAGTCCTCAAAAATCAGGATGCCTTTTTCCTTTCAAAGCCCACACAAGTTAGTGGCAC
* **
1425385 CCTTTAGTCCTCAAAGAGCAAG-ATGCCCTTTT-CC
316 CCTTTAGTCCTCAAAGAGC-AGCATGCCTTTTTAAG
** * * * ** *** * * * *
1425419 TTTCA----AT-GCCCACACGAGTTGGTGGCAC-CATTCAGTCTCCTTTCAAAGCCCACACAAGT
1 TGGCACCCTTTAGTCCTCA--AAATGCAAG-ACGCCTT---TTTCCTTTAAAAACCCACAC-AGT
* * * ** *
1425478 TGGTGGCACCCTTTAGTCCTCAAATAGCAGGATGCCTTTTTCATTTCAAAGCTCACACGAGTT-C
59 TGGTGGCACCATTTAGTCCTCAAAGAGCAAGACACCTTTTTCATTTCAAAGCCCACACGAGTTGC
* * ** * * * * * * *
1425542 ATGGCACCCTTTAGTCCTTAAA-ATGCAGGATGCCTTTTTCGTTTAAAAACCCACATTG-GTTGG
124 -TGGCACCCTTTAGTCCTCAAAGA-GCAAGACACATTTCTCCTTTCAAAGCCCACA-CGAGTTGA
* * * * * * * * * *
1425605 TGG-TCCATTTTGTCTTCAAAGAGCAGGACACCTTTTTCTTTTCAAAGCCCGCACATGTTGTTGG
186 TGGCACCCTTTAGTCCTAAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACAAGTTGGTGG
* * * * * ** * * *
1425669 CACCCTTTAGTCCTCAAAGAGCAAGACGTATTTTTCTTTTCAAAGCCCACAGAAGTT-GATGGGA
251 CACCCTTCAGTCCTCAAAAATCAGGATGCCTTTTTCCTTTCAAAGCCCACACAAGTTAG-TGGCA
* *
1425733 CCCTTTAGTCCTCAAATAGCAGGATGCCTTTTTCCTTTCGAAGCCCGCACGAGTTGG
315 CCCTTTAGTCCTCAAAGAGCAGCATGCC---TT--TTT----------A--A----G
* * * * * * * *
1425790 TGGCACCCTTCAGTCCTCAAAAAGTAGGATGCCTTTTTCCTTTCAAAGCCCACACGAGTTAGTGG
1 TGGCACCCTTTAGTCCTCAAAATGCAAGACGCCTTTTTCCTTTAAAAACCCACAC-AGTTGGTGG
*
1425855 CACCCTTTAGTCCTCAAAGAGC-AG-CATGCC---TT--TTT----------A--A---G-TGGC
65 CACCATTTAGTCCTCAAAGAGCAAGACA--CCTTTTTCATTTCAAAGCCCACACGAGTTGCTGGC
* * * *
1425897 ACCCTTTAGTCCTCAAAGAGCAAGACGC-TTTTTCCTTTCGAAGCCCACAC-AGTTGGTGGCACC
128 ACCCTTTAGTCCTCAAAGAGCAAGACACATTTCTCCTTTCAAAGCCCACACGAGTTGATGGCACC
* * * * * * *
1425960 CTTTAGTCCTCAAAGAGCAAGACACCTTTTTCATTTCAAAGCCTACACGAGTTGCTGGCACCCTT
193 CTTTAGTCCTAAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACAAGTTGGTGGCACCCTT
* * * * * ** * * *
1426025 TAGTCGTCGAAGAGT-AAGACACCTTTCTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTA
258 CAGTCCTC-AAAAATCAGGATGCCTTTTTCCTTTCAAAGCCCACACAAGTTAGTGGCACCCTTTA
* * *
1426089 GTTCTAAAAGAGCAGGC-CGCCTTTTTCTTTTCAAAGCCCACACAAGTTGG
322 GTCCTCAAAGAGCA-GCATGCC----T-TTTT------------AA----G
* * * * * *
1426139 TGGCACCCTTTAGTCCTCAAAAAT-CAGGATGCCTTTTTCCTTTCAAAGCCCGCACAAGTTTGTG
1 TGGCACCCTTTAGTCCTC-AAAATGCAAGACGCCTTTTTCCTTTAAAAACCCACAC-AGTTGGTG
* * *** * ** * *
1426203 GCACCCTTTAGTCCTTAAAGAGCAAGATGTCTTTTTCCTTTCAGCGCCCACACGTGTTGGTGGCA
64 GCACCATTTAGTCCTCAAAGAGCAAGACACCTTTTTCATTTCAAAGCCCACACGAGTTGCTGGCA
* * *
1426268 CCC-----T--T-------C-AG-------TCTCCTTTCAAAGCCCACACAAGTTGGTGGCACGC
129 CCCTTTAGTCCTCAAAGAGCAAGACACATTTCTCCTTTCAAAGCCCACACGAGTTGATGGCACCC
* * * * * * * * * *
1426311 TTCAGTCCTCAAAGAGCAGGATGCCTTTCTCCTTTCAAAGCCAACACGAGTTGGTGACATCTTTT
194 TTTAGTCCTAAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACAAGTTGGTGGCACCCTTC
* * * * * ** * * **
1426376 AGTCCTCAAAAAGCTGGTTGCCTTTTTCGTTTCAAA-CCTACACGGGTTGGTGGC-CTCATTTTT
259 AGTCCTCAAAAATCAGGATGCCTTTTTCCTTTCAAAGCCCACACAAGTTAGTGGCAC-CCTTTAG
* * *
1426439 TCCTCAAAGAGTAGGACTCCTTTTTCTTTTCAAAGCCTACACGAGTTTG
323 TCCTCAAAGAGCAGCA-TGC-----CTTTT-------T--A--A----G
* * * * * * * *
1426488 TGGCACCCTTTAATTCTGAAAGA-GCAGGACGCCTTTTTCTTTTCAAAGCCCACACGAGTTTGTG
1 TGGCACCCTTTAGTCCTCAAA-ATGCAAGACGCCTTTTTCCTTTAAAAACCCACAC-AGTTGGTG
* * ** * * * *
1426552 ACACCCTTTAGTCCTCAAAGAGCAAGATGCCCTTTTCCTTTCAATGCCCACACGAGTTGGTGGCA
64 GCACCATTTAGTCCTCAAAGAGCAAGACACCTTTTTCATTTCAAAGCCCACACGAGTTGCTGGCA
* * * * * * * *
1426617 CCATTCAGTCTCCTTTCAAAGCCCACACAAGTTGGTGGCACCCTTTAGTCCTCAAATAGCAGGAT
129 CCCTTTAG--TCC--TCAAAG---A-GCAA------GACA-CATTT-CTCCT----T-TCA--AA
**** * * * * * * * *
1426682 GCCTTTTTC-ATTTCAAAGCTCACACGAGTTCATGGCACCCTTTAGTCCTTAAA-ATGCAGGATG
171 GCC-CACACGAGTT-GATG-GCAC-C--CTT--TAG--TCC--TA------AAAGA-GCAGGACG
* * * *** * * ** * * * **
1426745 CCTTTTTCGTTTAAAAACCCACATTGGTTGGTGG-TCCATTTTGTCTTCAAAGAGCAGGACACCT
217 CCTTTTTCCTTTCAAAGCCCACACAAGTTGGTGGCACCCTTCAGTCCTCAAAAATCAGGATGCCT
* * *
1426809 TTTTCTTTTCAAAGCCCGCACATGTT-GTTGGCACCCTTTAGTCCTCAAAGAGCAAGACGTATTT
282 TTTTCCTTTCAAAGCCCACACAAGTTAG-TGGCACCCTTTAGTCCTCAAAGAGC-AG-C--A--T
** *
1426873 TTCTTTTCAAAGCCCACAGAAGTTG
340 GCCTTTT-----------TAA---G
* * * ** * *
1426898 ATGGGACCCTTTAGTCCTC-AAATAGCAGGATGCCTTTTTCCTTTCGAAGCCCGCACGAGTTGGT
1 -TGGCACCCTTTAGTCCTCAAAAT-GCAAGACGCCTTTTTCCTTTAAAAACCCACAC-AGTTGGT
* * * * * ** *
1426962 GGCACCCTTCAGTCCTCAAAAAGTAGGATGCCTTTTTCCTTTCAAAGCCCACACGAGTTAG-TGG
63 GGCACCATTTAGTCCTCAAAGAGCAAGACACCTTTTTCATTTCAAAGCCCACACGAGTT-GCTGG
* **
1427026 CACCCTTTAGTCCTCAAAGAGC-AG---CA--T-GCCTTT--------TTA--A---G-TGGCAC
127 CACCCTTTAGTCCTCAAAGAGCAAGACACATTTCTCCTTTCAAAGCCCACACGAGTTGATGGCAC
* * *
1427070 CCTTTAGTCCTCAAAGAGCAAGACG-CTTTTTCCTTTCGAAGCCCACAC-AGTTGGTGGCACCCT
192 CCTTTAGTCCTAAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACAAGTTGGTGGCACCCT
* * * * ** * * *
1427133 TTAGTCCTCAAAGAGCAAGACACCTTTTTCATTTCAAAGCCTACACGAGTT-GCTGGCACCCTTT
257 TCAGTCCTCAAAAATCAGGATGCCTTTTTCCTTTCAAAGCCCACACAAGTTAG-TGGCACCCTTT
* * * * **
1427197 AGTCGTCGAAGAGTAAGACACCTTTCTCCTTTCAAAGCCCACACGAGTTGG
321 AGTCCTC-AA-AG--AG-CAGC-AT-GCCTTT--------TTA--A----G
* * * * * * *
1427248 TGGCACCCTTTAGTTCT-AAAAGAGCAGGCCGCCTTTTTCTTTTCAAAGCCCACACAAGTTGGTG
1 TGGCACCCTTTAGTCCTCAAAA-TGCAAGACGCCTTTTTCCTTTAAAAACCCACAC-AGTTGGTG
* * * * ** * * *
1427312 GCACCCTTTAGTCCTCAAAAATCAGGATGCCTTTTTCCTTTCAAAGCCCGCACAAGTTTG-TGGC
64 GCACCATTTAGTCCTCAAAGAGCAAGACACCTTTTTCATTTCAAAGCCCACACGAG-TTGCTGGC
* ** * ** * *
1427376 ACCCTTTAGTCCTTAAAGAGCAAGATGTC-TTTTTCCTTTCAGCGCCCACACGTGTTGGTGGCAC
128 ACCCTTTAGTCCTCAAAGAGCAAGA-CACATTTCTCCTTTCAAAGCCCACACGAGTTGATGGCAC
*
1427440 CC-----T--T-------C---A-G----TCTCCTTTCAAAGCCCACACAAGTTGGTGGCACCCT
192 CCTTTAGTCCTAAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACAAGTTGGTGGCACCCT
* * * * * * * * *
1427483 TCAGTCCTCAAAGAGCAGGATGCCTTTCTCCTTTCAAAGCCAACACGAGTTGGTGACATCTTTTA
257 TCAGTCCTCAAAAATCAGGATGCCTTTTTCCTTTCAAAGCCCACACAAGTTAGTGGCACCCTTTA
* **
1427548 GTCCTCAAAAAGCAGGTTGCCTTTTTCGTTTCAAACCTACACGGG
322 GTCCTCAAAGAGCAGCATGCC----T--TTT------TA-A---G
** ** * * * * * * *
1427593 TTGGTGGCCTCATTTTTTCCTCAAAGA-GTAGGACTCCTTTTTCTTTTCAAAGCCTACACGAGTT
1 -TGG-CACC-C-TTTAGTCCTCAAA-ATGCAAGACGCCTTTTTCCTTTAAAAACCCACAC-AGTT
* * * * * * * *
1427657 TGTGGCACCCTTTAATTCTGAAAGAGCAGGACGCCTTTTTCTTTTCAAAGCCCACACGAGTTTG-
60 GGTGGCACCATTTAGTCCTCAAAGAGCAAGACACCTTTTTCATTTCAAAGCCCACACGAG-TTGC
* * * *
1427721 TGACACCCTTTAGTCCTCAAAGAGCAAGATGC-CCTTT-TCCTTTCAATGCCCACACGAGTTGGT
124 TGGCACCCTTTAGTCCTCAAAGAGCAAGA--CACATTTCTCCTTTCAAAGCCCACACGAGTTGAT
*
1427784 GGCA-CC---A-T--T-------C---A-G----TCTCCTTTCAAAGCCCACACAAGTTGGTGGC
187 GGCACCCTTTAGTCCTAAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACAAGTTGGTGGC
* * * * * *
1427827 ACCCTTTAGTCCTCAAATAGCAGGATGCCTTTTTCATTTCAAAGCTCACACGAGTTCA-TGGCAC
252 ACCCTTCAGTCCTCAAAAATCAGGATGCCTTTTTCCTTTCAAAGCCCACACAAGTT-AGTGGCAC
* *
1427891 CCTTTAGTCCTTAAA-ATGCAGGATGCCTTTTTCGTTTAAAAACCCACATTGG
316 CCTTTAGTCCTCAAAGA-GCAGCATGCC---TT--TTT--------A-A---G
** * * * * * * * * *
1427943 TTGGTGGTCCATTTTGTCTTCAAAGA-GCAGGACACCTTTTTCTTTTCAAAGCCCGCACATGTTG
1 -T-G-GCACCCTTTAGTCCTCAAA-ATGCAAGACGCCTTTTTCCTTTAAAAACCCACACA-GTTG
* * *** * *
1428007 TTGGCACCCTTTAGTCCTCAAAGAGCAAGACGTATTTTTCTTTTCAAAGCCCACA-GAAGTTGAT
61 GTGGCACCATTTAGTCCTCAAAGAGCAAGACACCTTTTTCATTTCAAAGCCCACACG-AGTTGCT
* * * ** * * * * *
1428071 GGGACCCTTTAGTCCTCAAATAGCAGGATGCCTTTTTCCTTTCGAAGCCCGCACGAGTTGGTGGC
125 GGCACCCTTTAGTCCTCAAAGAGCAAGACACATTTCTCCTTTCAAAGCCCACACGAGTTGATGGC
* * * * *
1428136 ACCCTTCAGTCCTCAAAA-AGTAGGATGCCTTTTTCCTTTCAAAGCCCACACGAGTTAGTGGCAC
190 ACCCTTTAGTCCT-AAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACAAGTTGGTGGCAC
* * * * ** ** * * * **
1428200 CCTTTAGTCCTCAAAGAGCAGCATGCCTTTTTAAGTGGCACCCTTTAGTCCTCA-AAG--AGCAA
254 CCTTCAGTCCTCAAAAATCAGGATGCCTTTTT-CCTTTCA-----AAGCCCACACAAGTTAG-TG
* * * ** ** *
1428262 G-ACGCTTT-TTCCTTTCGAAGCCCA-CA---C-AGTT-GG
312 GCACCCTTTAGTCC--TCAAAGAGCAGCATGCCTTTTTAAG
* * * * * *
1428295 TGGCACCCTTTAGTCCTCAAAGA-GCAAGACACCTTTTTCATTTCAAAGCCTACACGAGTTGCTG
1 TGGCACCCTTTAGTCCTCAAA-ATGCAAGACGCCTTTTTCCTTTAAAAACCCACAC-AGTTGGTG
* * * * * * *
1428359 GCACCCTTTAGTCGTCGAAGAGTAAGACACCTTTCTCCTTTCAAAGCCCACACGAGTTGGTGGCA
64 GCACCATTTAGTCCTCAAAGAGCAAGACACCTTTTTCATTTCAAAGCCCACACGAGTTGCTGGCA
* * * * * * * * * *
1428424 CCCTTTAGTTCTAAAAGAGCAGGCCGCCTTTTTCTTTTCAAAGCCCACACAAGTTGGTGGCACCC
129 CCCTTTAGTCCTCAAAGAGCAAGACACATTTCTCCTTTCAAAGCCCACACGAGTTGATGGCACCC
* * *
1428489 TTTAGTCCTCAAAA-ATCAGGATGCCTTTTTCCTTTCAAAGCCCACACAAGTTTGTGGCACCCTT
194 TTTAGTCCT-AAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACAAGTTGGTGGCACCCTT
* * * * * * ** ** * *
1428553 TAGTCCTTAAAGAGCAAGATGTCTTTTTCCTTTCAGCGCCCACACGTGTTGGTGGCACCCTTCAG
258 CAGTCCTCAAAAATCAGGATGCCTTTTTCCTTTCAAAGCCCACACAAGTTAGTGGCACCCTTTAG
** *** *
1428618 TCTCCTTTCAAAGCCCA-CA---CAAGTT-GG
323 --TCC--TCAAAGAGCAGCATGCCTTTTTAAG
* * * * * * *
1428645 TGGCACCCTTCAGTCCTCAAAGA-GCAGGATGCCTTTCTCCTTTCAAAGCCAACACGAGTTGGTG
1 TGGCACCCTTTAGTCCTCAAA-ATGCAAGACGCCTTTTTCCTTTAAAAACCCACAC-AGTTGGTG
* * * * * *** * * * *
1428709 ACATCTTTTAGTCCTCAAAAAGCAGGTTGCCTTTTTCGTTTCAAA-CCTACACGGGTTGGTGGC-
64 GCACCATTTAGTCCTCAAAGAGCAAGACACCTTTTTCATTTCAAAGCCCACACGAGTTGCTGGCA
* ** * * * * * * *
1428772 CTCATTTTTTCCTCAAAGAGTAGGACTCCTTTTTCTTTTCAAAGCCTACACGAGTTTG-TGGCAC
129 C-CCTTTAGTCCTCAAAGAGCAAGACACATTTCTCCTTTCAAAGCCCACACGAG-TTGATGGCAC
* * * * * * *
1428836 CCTTTAGTTCTGAAAGAGCAGGATGCCTTTTTCTTTTCAAAGCCCACACGAGTTTGTGACACCCT
192 CCTTTAGTCCTAAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACAAGTTGGTGGCACCCT
* * * * * * * * * * *
1428901 TTAGTCTTCAAAGAGCAAGATGCCCTTTTCCTTTCAATGCCCACACGAGTTGGTGGCACCATTCA
257 TCAGTCCTCAAAAATCAGGATGCCTTTTTCCTTTCAAAGCCCACACAAGTTAGTGGCACCCTTTA
** *** *
1428966 GTCTCCTTTCAAAGCCCA-CA---CAAGTT-GG
322 G--TCC--TCAAAGAGCAGCATGCCTTTTTAAG
* * * * * * **
1428994 TGGCACCCTTTAGTCCTC-AAATAGCAGGATGCCTTTTTCATTTCAAAGCTCACACGAGTTCATG
1 TGGCACCCTTTAGTCCTCAAAAT-GCAAGACGCCTTTTTCCTTTAAAAACCCACAC-AGTTGGTG
* * * ** * * * * *
1429058 GCACCCTTTAGTCCTTAAA-ATGCAGGATGCCTTTTTCGTTTAAAAACCCACATTG-GTTGGTGG
64 GCACCATTTAGTCCTCAAAGA-GCAAGACACCTTTTTCATTTCAAAGCCCACA-CGAGTTGCTGG
* * * * * * * * * *
1429121 -TCCATTTTGTCTTCAAAGAGCAGGACACCTTTTTCTTTTCAAAGCCCGCAC-ATGTTGTTGGCA
127 CACCCTTTAGTCCTCAAAGAGCAAGACACATTTCTCCTTTCAAAGCCCACACGA-GTTGATGGCA
* * ** * * * *
1429184 CCCTTTAGTCCTCAAAGAGCAAGACGTATTTTTCTTTTCAAAGCCCACAGAAGTTGATGGGACCC
191 CCCTTTAGTCCTAAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACAAGTTGGTGGCACCC
* * * ** * * * *
1429249 TTTAGTCCTCAAATAGCAGGATGCCTTTTTCCTTTCGTAGCCCGCACGAGTTGGTGGCACCCTTC
256 TTCAGTCCTCAAAAATCAGGATGCCTTTTTCCTTTCAAAGCCCACACAAGTTAGTGGCACCCTTT
* * **
1429314 AGTCCTCAAAAAGCAGGATGCCTTTTT-CC
321 AGTCCTCAAAGAGCAGCATGCCTTTTTAAG
** * * * ** ** * * * * *
1429343 TTTCA-----AAGCCCACACGAGTTAG-TGGCAC-CCTTTAGTCC-TCAAAGA-GCAGGATGCCT
1 TGGCACCCTTTAGTCCTCA--AAAT-GCAAG-ACGCCTTT-TTCCTTTAAAAACCCA-CA---C-
** * ** ** *
1429399 TTTTGAGTGGCACCCTTTAGTCCGGAAAGAGCAAGATGCCTTTTTCCTTTCAAAGCCCACAC-AG
56 AGTTG-GTGGCACCATTTAGTCCTCAAAGAGCAAGACACCTTTTTCATTTCAAAGCCCACACGAG
* * * * *
1429463 TTGGTGGCACCCTTTAATCCTCAAAGAGCAAGACACCTTTTTCCTTTCAAAGCCTACACGAGTTG
120 TTGCTGGCACCCTTTAGTCCTCAAAGAGCAAGACACATTTCTCCTTTCAAAGCCCACACGAGTTG
* * ** * * **
1429528 CTGGCACTCTTTAGTCCTCGAAGAGCAGGATGCTTTTTTCCTTTCAAAGCCCACAGGAGTTGGTG
185 ATGGCACCCTTTAGTCCTAAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACAAGTTGGTG
* * * * * * * * *
1429593 GCACCTTTTAGTCCTCAAAGAGT-AGGACGCATTTTTCTTTTCAAAGCTCATACAAGTTGGTGGC
250 GCACCCTTCAGTCCTCAAA-AATCAGGATGCCTTTTTCCTTTCAAAGCCCACACAAGTTAGTGGC
* * *
1429657 ACCCTTTAGTCCTCAAAGAGCAGGACGTCTTTTTCCTTTCAAAGCCCACACGAGTTTG
314 ACCCTTTAGTCCTCAAAGAGCAGCATG-C--CTT--TTT----------A--A----G
* * * **
1429715 TGGCACCCTTTAATCCTCAAAGA-GCAAGATGCCTTTTTCCTTTCAACGCCCACACGAGTTGGTG
1 TGGCACCCTTTAGTCCTCAAA-ATGCAAGACGCCTTTTTCCTTTAAAAACCCACAC-AGTTGGTG
* * *
1429779 GCACCCTTTAGT-CT--------------CC--TTTCA----AAA-CCCACACAAGTTGGTGGCA
64 GCACCATTTAGTCCTCAAAGAGCAAGACACCTTTTTCATTTCAAAGCCCACACGAGTTGCTGGCA
* ** * * *
1429822 CCCTTTAGTCCTCAAAGAGCAGGATGCCTTTTTCCTTTCTAAGCCCACACGAGTTCG-TGGCACC
129 CCCTTTAGTCCTCAAAGAGCAAGACACATTTCTCCTTTCAAAGCCCACACGAGTT-GATGGCACC
* * ** * * * * * *
1429886 ATTTAGTCCTTAAAA-AGAAGGATTCCTTTTTCATTTCAAAACTCACACGAGTTGGTGG-TCCAT
193 CTTTAGTCC-TAAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACAAGTTGGTGGCACCCT
** * * * * * * **
1429949 TTTGTCCTCAAAGAGCAGGACAG-CTTTTTCTTTTCAAAG-CC-CATATGTGTAGTTGGTGCCCT
257 TCAGTCCTCAAAAATCAGGA-TGCCTTTTTCCTTTCAAAGCCCACACAAGT-TAG-TGGCACCCT
* * *
1430011 TTAGTCCTCAAAGAGCAAGAAGTATTTTTCCTTTCAAAGCCCATAGAAGTTGG
319 TTAGTCCTCAAAGAGC----AGCA---TGCCTTT---------T-TAA----G
* * * * * *
1430064 TGGCACCCTTTAATCCTCAAAGA-GCAGGATGCCTTTTTCCTTTCAAAGCCCGCACGAGTTGGTG
1 TGGCACCCTTTAGTCCTCAAA-ATGCAAGACGCCTTTTTCCTTTAAAAACCCACAC-AGTTGGTG
* * **
1430128 GCACCCTTTAGTCCTCAAAGAGCAGGATGCC---TT--TTT------------GA----CTGGCA
64 GCACCATTTAGTCCTCAAAGAGCAAGACACCTTTTTCATTTCAAAGCCCACACGAGTTGCTGGCA
* * * * * *
1430172 CCCGTTAGTCATCAAAGAGCAAGACGCCTTTTTCCTTTCAAAGCCCACAC-AGTTTG-TGGAACC
129 CCCTTTAGTCCTCAAAGAGCAAGACACATTTCTCCTTTCAAAGCCCACACGAG-TTGATGGCACC
** * * * * * * ****
1430235 CTTTAGTCCTCTAAGAGCAAGACACCTTTTTCCTTTCGAAGCCTACCCGAGCAAGATGCCTTTTT
193 CTTTAGTCCTAAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCC--CAC-A-CAAGTTG-GTGGCA
* * * ** * * * *
1430300 CCTTTCAACGCCCACACGAGT-TGG-TGGCACCCTTCAGTCTCCTTTCAAAGCCCACACAAGTTG
253 CCCTTC-A-GTCCTCAAAAATCAGGAT-G---CCTT---TTTCCTTTCAAAGCCCACACAAGTTA
* *
1430363 GTGGCACCCTTTAGTCCTCAAAGAGAAGGATGCCTTTTTCCTTTCTAAGCCCACACGCGTTCG
309 GTGGCACCCTTTAGTCCTCAAAGAGCAGCATGCC----T--TTT-T------A-A-------G
* * * * * ** * *
1430426 TGGCTCCATTTAGTCCTTAAAAAGCAGGATTCCTTTTTCATTTCAAAACCCACACGAGTTGGTGG
1 TGGCACCCTTTAGTCCTCAAAATGCAAGACGCCTTTTTCCTTTAAAAACCCACAC-AGTTGGTGG
* * * * * * * *
1430491 -TCCATTTTGTCCTCAAAGAGCAGGACACCTTTTTCTTTTCAAAGCCCACAGGTGTTGTTGGTAC
65 CACCATTTAGTCCTCAAAGAGCAAGACACCTTTTTCATTTCAAAGCCCACACGAGTTGCTGGCAC
** * * *
1430555 CCTTTAGTCCTCAAAGAGCAAGACGTATTTTTCCTTTCAAAGCCCATA-GAAGTTGGTGGCACCC
130 CCTTTAGTCCTCAAAGAGCAAGACACATTTCTCCTTTCAAAGCCCACACG-AGTTGATGGCACCC
* * * * *
1430619 TTTAGTCCTAAAAGAGAAGGATGCCTTTTTCCTTTCAAAGCCCGCACGAGTTGGTGGCACCCTTT
194 TTTAGTCCTAAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACAAGTTGGTGGCACCCTTC
* * * *
1430684 AGTCCTCAAAAAGCAGGATGCCTTTCTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGT
259 AGTCCTCAAAAATCAGGATGCCTTTTTCCTTTCAAAGCCCACACAAGTTAGTGGCACCCTTTAGT
*
1430749 CCTCAAAGAGCATCATGCCTTTTTGAA-
324 CCTCAAAGAGCAGCATGCCTTTTT-AAG
* *
1430776 TGGCACCCTTTAGTCCTCAAAGA-GCAAGACGCCTTTTTCCTTTCAAAGCCCACACAGTTGGTGG
1 TGGCACCCTTTAGTCCTCAAA-ATGCAAGACGCCTTTTTCCTTTAAAAACCCACACAGTTGGTGG
* * *
1430840 CACCCTTTAGTCCTCAAAGAGCAAGACACCTTTTTCATTTCAAAGCCTACACGAGTTGTTGGCAC
65 CACCATTTAGTCCTCAAAGAGCAAGACACCTTTTTCATTTCAAAGCCCACACGAGTTGCTGGCAC
* * * * * * * *
1430905 CCTTTAGTCCTCGAAGAGTAGGACACCTTTTTCCTTTCAAAGCTCACACAAGTTGCTGGCACCCT
130 CCTTTAGTCCTCAAAGAGCAAGACACATTTCTCCTTTCAAAGCCCACACGAGTTGATGGCACCCT
* * * * * * *
1430970 TTAGTCCTCAAAGAGCAGGATGCCTATTTCATTTCAAAGCCCACACGAGTTCGTGGCACCCTTTA
195 TTAGTCCTAAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACAAGTTGGTGGCACCCTTCA
* * * * * *** * * * *
1431035 GTCCTTAAAAACCAGGATGCCTTTTTCGTTTAAAAACCCACATGGGTTGGTGG-TCCATTTTGTC
260 GTCCTCAAAAATCAGGATGCCTTTTTCCTTTCAAAGCCCACACAAGTTAGTGGCACCCTTTAGTC
** *
1431099 CTCAAAGAGCAGGACACCTTTTTCTTTTCAAAGCCCACACGTGTTG
325 CTCAAAGAGCA-G-CA----TGCCTTTT-------TA-A------G
* ** * * * *
1431145 TTGGTACCCTTTAGTCCTCAAAGA-GCAAGACGTATTTTTCCTTTCAAAGCCCATAGAAGTTGGT
1 -TGGCACCCTTTAGTCCTCAAA-ATGCAAGACGCCTTTTTCCTTTAAAAACCCACA-CAGTTGGT
* ** * * *
1431209 GGCACCCTTTAGTCCTCAAAGAG-AAGGATGCCTTTTTCCTTTCAAAGCCCGCACGAGTTGGTGG
63 GGCACCATTTAGTCCTCAAAGAGCAA-GACACCTTTTTCATTTCAAAGCCCACACGAGTTGCTGG
* * * ** * * * *
1431273 CACCCTTTAGTCCTTAAAAAGCAGGATGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGCCAC
127 CACCCTTTAGTCCTCAAAGAGCAAGACACATTTCTCCTTTCAAAGCCCACACGAGTTGATGGCAC
* * * *
1431338 CCTTTTGTCCTCAAAGAGCAGCATGCC---TT--TTT------------AA----GTGGCACCCT
192 CCTTTAGTCCTAAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACAAGTTGGTGGCACCCT
* * * * ** * *
1431382 TTAGTCCTCAAAGAGCAAGACACCTTTTTCCTTTCGAAGCCCACAC-AGTTGGTGGCACCCTTTA
257 TCAGTCCTCAAAAATCAGGATGCCTTTTTCCTTTCAAAGCCCACACAAGTTAGTGGCACCCTTTA
* * *
1431446 GTCCTCAAAGAGCAAGACACCTTTTTCATTTCAAAGCCTACACGAG
322 GTCCTCAAAGAGC-AG-CA-----TGCCTTT-------T-TA--AG
* * * * * * *
1431492 TTGTTGCCACCCTTTAGTCCTCGAAGA-GTAGGACACCTTTTTCCTTTCAAAGCTCACACAAGTT
1 -TG--G-CACCCTTTAGTCCTC-AAAATGCAAGACGCCTTTTTCCTTTAAAAACCCACAC-AGTT
* * ** *
1431556 GGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTATTTCATTTCAAAGCCCACACGAGTT-CG
60 GGTGGCACCATTTAGTCCTCAAAGAGCAAGACACCTTTTTCATTTCAAAGCCCACACGAGTTGC-
* * * ** * * * * * * * *
1431620 TGGCACCCTTTAGTCCTTAAA-AACTAGGATGCCTTTTTCGTTTAAAAACCCACATGGGTTGGTG
124 TGGCACCCTTTAGTCCTCAAAGAGC-AAGACACATTTCTCCTTTCAAAGCCCACACGAGTTGATG
* * * * ** * ** * *
1431684 G-TCCATTTTGTCCTCAAAGAGCAGGATACCTTTTTCTTTTCAAAGCCCACACGTGTTGTTGGTA
188 GCACCCTTTAGTCCTAAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACAAGTTGGTGGCA
* * * * * ** * * *
1431748 CCCTTTAGTCCTCAAAGAGCAAGACGTATTTTTCCTTTCAAAGCCCATAGAAGTTGGTGGCACCC
253 CCCTTCAGTCCTCAAAAATCAGGATGCCTTTTTCCTTTCAAAGCCCACACAAGTTAGTGGCACCC
* *
1431813 TTTAATCCTCAAAGAGCAGGATGCCTTTTT
318 TTTAGTCCTCAAAGAGCAGCATGCCTTTTT
1431843 CCTTTCAAAG
Statistics
Matches: 5517, Mismatches: 1040, Indels: 1122
0.72 0.14 0.15
Matches are distributed among these distances:
341 1 0.00
342 1 0.00
343 8 0.00
344 8 0.00
345 16 0.00
346 30 0.01
347 27 0.00
348 80 0.01
349 2688 0.49
350 1364 0.25
351 50 0.01
352 13 0.00
353 18 0.00
354 20 0.00
355 23 0.00
356 15 0.00
357 7 0.00
358 8 0.00
359 6 0.00
360 4 0.00
361 28 0.01
362 95 0.02
363 8 0.00
364 18 0.00
365 10 0.00
366 11 0.00
367 2 0.00
368 4 0.00
369 3 0.00
370 120 0.02
371 359 0.07
372 13 0.00
373 5 0.00
374 23 0.00
375 17 0.00
376 15 0.00
377 14 0.00
378 8 0.00
379 5 0.00
380 1 0.00
381 2 0.00
382 51 0.01
383 44 0.01
384 1 0.00
386 1 0.00
387 4 0.00
388 3 0.00
390 1 0.00
391 1 0.00
392 3 0.00
394 7 0.00
395 2 0.00
396 4 0.00
399 2 0.00
401 1 0.00
402 1 0.00
403 3 0.00
404 1 0.00
405 1 0.00
407 6 0.00
409 4 0.00
410 39 0.01
411 181 0.03
412 4 0.00
413 1 0.00
415 2 0.00
416 1 0.00
ACGTcount: A:0.24, C:0.27, G:0.19, T:0.30
Consensus pattern (350 bp):
TGGCACCCTTTAGTCCTCAAAATGCAAGACGCCTTTTTCCTTTAAAAACCCACACAGTTGGTGGC
ACCATTTAGTCCTCAAAGAGCAAGACACCTTTTTCATTTCAAAGCCCACACGAGTTGCTGGCACC
CTTTAGTCCTCAAAGAGCAAGACACATTTCTCCTTTCAAAGCCCACACGAGTTGATGGCACCCTT
TAGTCCTAAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACAAGTTGGTGGCACCCTTCAG
TCCTCAAAAATCAGGATGCCTTTTTCCTTTCAAAGCCCACACAAGTTAGTGGCACCCTTTAGTCC
TCAAAGAGCAGCATGCCTTTTTAAG
Found at i:1424819 original size:101 final size:102
Alignment explanation
Indices: 1424618--1424807 Score: 285
Period size: 101 Copynumber: 1.9 Consensus size: 102
1424608 GCACGAGTTG
* * *
1424618 GTGGCACCCTTCAGTCCTCAAAAAGTAGGATGCCTTTTTCCTTTCAAAGCCCACACGAGTTAGTG
1 GTGGCACCCTTCAGTCCTCAAAAAGCAAGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTAGTG
*
1424683 GCACCTTTTAGTCCTCAAAGAGCAGCATGCCTTTTTAA
66 GCACCCTTTAGTCCTCAAAGAGCAGCA-GCCTTTTTAA
* * * *
1424721 GTGGCACCCTTTAGTCCTCAAAGAGCAAGACG-CTTTTTCCTTTCGAAGCCCACAC-AGTTGGTG
1 GTGGCACCCTTCAGTCCTCAAAAAGCAAGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTAGTG
1424784 GCACCCTTTAGTCCTCAAAGAGCA
66 GCACCCTTTAGTCCTCAAAGAGCA
1424808 AGACACCTTT
Statistics
Matches: 79, Mismatches: 8, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
101 30 0.38
102 22 0.28
103 27 0.34
ACGTcount: A:0.25, C:0.28, G:0.19, T:0.27
Consensus pattern (102 bp):
GTGGCACCCTTCAGTCCTCAAAAAGCAAGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTAGTG
GCACCCTTTAGTCCTCAAAGAGCAGCAGCCTTTTTAA
Found at i:1424839 original size:163 final size:165
Alignment explanation
Indices: 1424561--1424867 Score: 449
Period size: 163 Copynumber: 1.9 Consensus size: 165
1424551 AGTTGATGGG
* * * *
1424561 ACCCTTTAGTCCTCAAATAGCAGGATGCCTTTTTCCTTTCGAAGCCCGCACGAGTTGGTGGCACC
1 ACCCTTTAGTCCTCAAAGAGCAAGACGCCTTTTTCCTTTCGAAGCCCACACGAGTTGGTGGCACC
* * ** * *
1424626 CTTCAGTCCTCAAAAAGTAGGATGCCTTTTTCCTTTCAAAGCCCACACGAGTTAG-TGGCACCTT
66 CTTCAGTCCTCAAAAAGCAAGACACCTTTTTCATTTCAAAGCCCACACGAGTT-GCTGGCACCCT
1424690 TTAGTCCTCAAAGAGCAGCATGCCTTTTTAAGTGGC
130 TTAGTCCTCAAAGAGCAGCATGCCTTTTTAAGTGGC
1424726 ACCCTTTAGTCCTCAAAGAGCAAGACG-CTTTTTCCTTTCGAAGCCCACAC-AGTTGGTGGCACC
1 ACCCTTTAGTCCTCAAAGAGCAAGACGCCTTTTTCCTTTCGAAGCCCACACGAGTTGGTGGCACC
* * *
1424789 CTTTAGTCCTCAAAGAGCAAGACACCTTTTTCATTTCAAAGCCTACACGAGTTGCTGGCACCCTT
66 CTTCAGTCCTCAAAAAGCAAGACACCTTTTTCATTTCAAAGCCCACACGAGTTGCTGGCACCCTT
* *
1424854 TAGTCGTCGAAGAG
131 TAGTCCTCAAAGAG
1424868 TAAGACACCT
Statistics
Matches: 126, Mismatches: 15, Indels: 4
0.87 0.10 0.03
Matches are distributed among these distances:
162 1 0.01
163 79 0.63
164 22 0.17
165 24 0.19
ACGTcount: A:0.24, C:0.28, G:0.20, T:0.28
Consensus pattern (165 bp):
ACCCTTTAGTCCTCAAAGAGCAAGACGCCTTTTTCCTTTCGAAGCCCACACGAGTTGGTGGCACC
CTTCAGTCCTCAAAAAGCAAGACACCTTTTTCATTTCAAAGCCCACACGAGTTGCTGGCACCCTT
TAGTCCTCAAAGAGCAGCATGCCTTTTTAAGTGGC
Found at i:1424873 original size:62 final size:62
Alignment explanation
Indices: 1424721--1425106 Score: 470
Period size: 62 Copynumber: 6.3 Consensus size: 62
1424711 GCCTTTTTAA
* *
1424721 GTGGCACCCTTTAGTCCTCAAAGAGCAAGAC-GCTTTTTCCTTTCGAAGCCCACAC-AGTTG
1 GTGGCACCCTTTAGTCCTCAAAGAGCAAGACACCTTTTTCCTTTCAAAGCCCACACAAGTTG
* * *
1424781 GTGGCACCCTTTAGTCCTCAAAGAGCAAGACACCTTTTTCATTTCAAAGCCTACACGAGTTG
1 GTGGCACCCTTTAGTCCTCAAAGAGCAAGACACCTTTTTCCTTTCAAAGCCCACACAAGTTG
* * * * * *
1424843 CTGGCACCCTTTAGTCGTCGAAGAGTAAGACACCTTTCTCCTTTCAAAGCCCACACGAGTTG
1 GTGGCACCCTTTAGTCCTCAAAGAGCAAGACACCTTTTTCCTTTCAAAGCCCACACAAGTTG
* * * * * *
1424905 GTGGCACCCTTTAGTTCTAAAAGAGCAGGCCGCCTTTTTCTTTTCAAAGCCCACACAAGTTG
1 GTGGCACCCTTTAGTCCTCAAAGAGCAAGACACCTTTTTCCTTTCAAAGCCCACACAAGTTG
* * * ** *
1424967 GTGGCACCCTTTAGTCCTCAAAAATCAGGATGCCTTTTTCCTTTCAAAGCCCACACAAGTTT
1 GTGGCACCCTTTAGTCCTCAAAGAGCAAGACACCTTTTTCCTTTCAAAGCCCACACAAGTTG
* *** ** **
1425029 GTGGCACCCTTTAGTCCTTAAAGAGCAAGATGTCTTTTTCCTTTCAGCGCCCACACGTGTTG
1 GTGGCACCCTTTAGTCCTCAAAGAGCAAGACACCTTTTTCCTTTCAAAGCCCACACAAGTTG
*
1425091 GTGGCACCCTTCAGTC
1 GTGGCACCCTTTAGTC
1425107 TCCTTTCAAA
Statistics
Matches: 282, Mismatches: 42, Indels: 2
0.87 0.13 0.01
Matches are distributed among these distances:
60 31 0.11
61 20 0.07
62 231 0.82
ACGTcount: A:0.24, C:0.29, G:0.19, T:0.28
Consensus pattern (62 bp):
GTGGCACCCTTTAGTCCTCAAAGAGCAAGACACCTTTTTCCTTTCAAAGCCCACACAAGTTG
Found at i:1424888 original size:225 final size:227
Alignment explanation
Indices: 1424495--1424932 Score: 619
Period size: 225 Copynumber: 1.9 Consensus size: 227
1424485 CACATGTTGT
*
1424495 TGGCACCCTTTAGTCCTCAAAGAGCAAGACGTATTTTTCTTTTCAAAGCCCACAGAAGTTGATGG
1 TGGCACCCTTTAGTCCTCAAAGAGCAAGACGTATTTTTCCTTTCAAAGCCCACAGAAGTTGATGG
* * * ** * * * *
1424560 GACCCTTTAGTCCTCAAATAGCAGGATGCCTTTTTCCTTTCGAAGCCCGCACGAGTTGGTGGCAC
66 CACCCTTTAGTCCTCAAAGAGCAAGACACCTTTTTCATTTCAAAGCCCACACGAGTTGCTGGCAC
* ** * *
1424625 CCTTCAGTCCTCAAAAAGTAGGATGCCTTTTTCCTTTCAAAGCCCACACGAGTTAGTGGCACCTT
131 CCTTCAGTCCTCAAAAAGTAAGACACCTTTCTCCTTTCAAAGCCCACACGAGTTAGTGGCACCCT
*
1424690 TTAGTCCTCAAAGAGCAGCATGCCTTTTTAAG
196 TTAGTCCTAAAAGAGCAGCATGCCTTTTTAAG
* * * *
1424722 TGGCACCCTTTAGTCCTCAAAGAGCAAGACG-CTTTTTCCTTTCGAAGCCCACA-CAGTTGGTGG
1 TGGCACCCTTTAGTCCTCAAAGAGCAAGACGTATTTTTCCTTTCAAAGCCCACAGAAGTTGATGG
*
1424785 CACCCTTTAGTCCTCAAAGAGCAAGACACCTTTTTCATTTCAAAGCCTACACGAGTTGCTGGCAC
66 CACCCTTTAGTCCTCAAAGAGCAAGACACCTTTTTCATTTCAAAGCCCACACGAGTTGCTGGCAC
* * * * *
1424850 CCTTTAGTCGTCGAAGAGTAAGACACCTTTCTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCT
131 CCTTCAGTCCTCAAAAAGTAAGACACCTTTCTCCTTTCAAAGCCCACACGAGTTAGTGGCACCCT
*
1424915 TTAGTTCTAAAAGAGCAG
196 TTAGTCCTAAAAGAGCAG
1424933 GCCGCCTTTT
Statistics
Matches: 184, Mismatches: 27, Indels: 2
0.86 0.13 0.01
Matches are distributed among these distances:
225 134 0.73
226 19 0.10
227 31 0.17
ACGTcount: A:0.25, C:0.27, G:0.20, T:0.28
Consensus pattern (227 bp):
TGGCACCCTTTAGTCCTCAAAGAGCAAGACGTATTTTTCCTTTCAAAGCCCACAGAAGTTGATGG
CACCCTTTAGTCCTCAAAGAGCAAGACACCTTTTTCATTTCAAAGCCCACACGAGTTGCTGGCAC
CCTTCAGTCCTCAAAAAGTAAGACACCTTTCTCCTTTCAAAGCCCACACGAGTTAGTGGCACCCT
TTAGTCCTAAAAGAGCAGCATGCCTTTTTAAG
Found at i:1425122 original size:40 final size:40
Alignment explanation
Indices: 1425067--1425146 Score: 115
Period size: 40 Copynumber: 2.0 Consensus size: 40
1425057 GATGTCTTTT
** **
1425067 TCCTTTCAGCGCCCACACGTGTTGGTGGCACCCTTCAGTC
1 TCCTTTCAAAGCCCACACAAGTTGGTGGCACCCTTCAGTC
*
1425107 TCCTTTCAAAGCCCACACAAGTTGGTGGCACGCTTCAGTC
1 TCCTTTCAAAGCCCACACAAGTTGGTGGCACCCTTCAGTC
1425147 CTCAAAGAGC
Statistics
Matches: 35, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
40 35 1.00
ACGTcount: A:0.17, C:0.35, G:0.21, T:0.26
Consensus pattern (40 bp):
TCCTTTCAAAGCCCACACAAGTTGGTGGCACCCTTCAGTC
Found at i:1425187 original size:102 final size:102
Alignment explanation
Indices: 1425005--1425195 Score: 283
Period size: 102 Copynumber: 1.9 Consensus size: 102
1424995 GATGCCTTTT
* * * * *
1425005 TCCTTTCAAAGCCCACACAAGTTTGTGGCACCCTTTAGTCCTTAAAGAGCAAGATGTCTTTTTCC
1 TCCTTTCAAAGCCCACACAAGTTGGTGGCACCCTTCAGTCCTCAAAGAGCAAGATGCCTTTCTCC
** * *
1425070 TTTCAGCGCCCACACGTGTTGGTGGCACCCTTCAGTC
66 TTTCAAAGCCAACACGAGTTGGTGGCACCCTTCAGTC
* *
1425107 TCCTTTCAAAGCCCACACAAGTTGGTGGCACGCTTCAGTCCTCAAAGAGCAGGATGCCTTTCTCC
1 TCCTTTCAAAGCCCACACAAGTTGGTGGCACCCTTCAGTCCTCAAAGAGCAAGATGCCTTTCTCC
1425172 TTTCAAAGCCAACACGAGTTGGTG
66 TTTCAAAGCCAACACGAGTTGGTG
1425196 ACATCTTTTA
Statistics
Matches: 78, Mismatches: 11, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
102 78 1.00
ACGTcount: A:0.23, C:0.30, G:0.20, T:0.28
Consensus pattern (102 bp):
TCCTTTCAAAGCCCACACAAGTTGGTGGCACCCTTCAGTCCTCAAAGAGCAAGATGCCTTTCTCC
TTTCAAAGCCAACACGAGTTGGTGGCACCCTTCAGTC
Found at i:1425209 original size:62 final size:62
Alignment explanation
Indices: 1425107--1425447 Score: 373
Period size: 62 Copynumber: 5.5 Consensus size: 62
1425097 CCCTTCAGTC
* * * *
1425107 TCCTTTCAAAGCCCACACAAGTTGGTGGCACGCTTCAGTCCTCAAAGAGCAGGATGCCTTTC
1 TCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTT
* * * * * *
1425169 TCCTTTCAAAGCCAACACGAGTTGGTGACATCTTTTAGTCCTCAAAAAGCAGGTTGCCTTTT
1 TCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTT
* * * * ** *
1425231 TCGTTTCAAA-CCTACACGGGTTGGTGGC-CTCATTTTTTCCTCAAAGAGTAGGACT-CCTTTT
1 TCCTTTCAAAGCCCACACGAGTTGGTGGCAC-CCTTTAGTCCTCAAAGAGCAGGA-TGCCTTTT
* * * * * * *
1425292 TCTTTTCAAAGCCTACACGAGTTTGTGGCACCCTTTAATTCTGAAAGAGCAGGACGCCTTTT
1 TCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTT
* * * * *
1425354 TCTTTTCAAAGCCCACACGAGTTTGTGACACCCTTTAGTCCTCAAAGAGCAAGATGCCCTTT
1 TCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTT
*
1425416 TCCTTTCAATGCCCACACGAGTTGGTGGCACC
1 TCCTTTCAAAGCCCACACGAGTTGGTGGCACC
1425448 ATTCAGTCTC
Statistics
Matches: 231, Mismatches: 43, Indels: 10
0.81 0.15 0.04
Matches are distributed among these distances:
61 47 0.20
62 183 0.79
63 1 0.00
ACGTcount: A:0.23, C:0.27, G:0.19, T:0.30
Consensus pattern (62 bp):
TCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTT
Found at i:1425351 original size:123 final size:124
Alignment explanation
Indices: 1425110--1425447 Score: 360
Period size: 123 Copynumber: 2.7 Consensus size: 124
1425100 TTCAGTCTCC
* * * *
1425110 TTTCAAAGCCCACACAAGTTGGTGGCACGC-TTCAGTCCTCAAAGAGCAGGATGCCTTTCTCCTT
1 TTTCAAAGCCCACACGAGTTGGTGACAC-CATTTAGTCCTCAAAGAGCAGGATGCCTTTTTCCTT
* * * * **
1425174 TCAAAGCCAACACGAGTTGGTGACATCTTTTAGTCCTCAAAAAGCAGGTTGCCTTTTTCG
65 TCAAAGCCAACACGAGTTGGTGGCACCCTTTAATCCTCAAAAAGCAGGACGCCTTTTTCG
* * * ** * *
1425234 TTTCAAA-CCTACACGGGTTGGTGGC-CTCATTTTTTCCTCAAAGAGTAGGACT-CCTTTTTCTT
1 TTTCAAAGCCCACACGAGTTGGTGACAC-CATTTAGTCCTCAAAGAGCAGGA-TGCCTTTTTCCT
* * * * * *
1425296 TTCAAAGCCTACACGAGTTTGTGGCACCCTTTAATTCTGAAAGAGCAGGACGCCTTTTTCT
64 TTCAAAGCCAACACGAGTTGGTGGCACCCTTTAATCCTCAAAAAGCAGGACGCCTTTTTCG
* * * *
1425357 TTTCAAAGCCCACACGAGTTTGTGACACCCTTTAGTCCTCAAAGAGCAAGATGCCCTTTTCCTTT
1 TTTCAAAGCCCACACGAGTTGGTGACACCATTTAGTCCTCAAAGAGCAGGATGCCTTTTTCCTTT
* *
1425422 CAATGCCCACACGAGTTGGTGGCACC
66 CAAAGCCAACACGAGTTGGTGGCACC
1425448 ATTCAGTCTC
Statistics
Matches: 173, Mismatches: 36, Indels: 10
0.79 0.16 0.05
Matches are distributed among these distances:
122 2 0.01
123 97 0.56
124 73 0.42
125 1 0.01
ACGTcount: A:0.24, C:0.27, G:0.19, T:0.30
Consensus pattern (124 bp):
TTTCAAAGCCCACACGAGTTGGTGACACCATTTAGTCCTCAAAGAGCAGGATGCCTTTTTCCTTT
CAAAGCCAACACGAGTTGGTGGCACCCTTTAATCCTCAAAAAGCAGGACGCCTTTTTCG
Found at i:1425535 original size:102 final size:102
Alignment explanation
Indices: 1425357--1425549 Score: 287
Period size: 102 Copynumber: 1.9 Consensus size: 102
1425347 GCCTTTTTCT
* * *
1425357 TTTCAAAGCCCACACGAGTTTGTGACACCCTTTAGTCCTCAAAGAGCAAGATGCCCTTTTCCTTT
1 TTTCAAAGCCCACACAAGTTGGTGACACCCTTTAGTCCTCAAAGAGCAAGATGCCCTTTTCATTT
* **
1425422 CAATGCCCACACGAGTTGGTGGCACCATTCAGTCTCC
66 CAAAGCCCACACGAGTTCATGGCACCATTCAGTCTCC
* * * *
1425459 TTTCAAAGCCCACACAAGTTGGTGGCACCCTTTAGTCCTCAAATAGCAGGATGCCTTTTTCATTT
1 TTTCAAAGCCCACACAAGTTGGTGACACCCTTTAGTCCTCAAAGAGCAAGATGCCCTTTTCATTT
*
1425524 CAAAGCTCACACGAGTTCATGGCACC
66 CAAAGCCCACACGAGTTCATGGCACC
1425550 CTTTAGTCCT
Statistics
Matches: 80, Mismatches: 11, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
102 80 1.00
ACGTcount: A:0.25, C:0.30, G:0.18, T:0.27
Consensus pattern (102 bp):
TTTCAAAGCCCACACAAGTTGGTGACACCCTTTAGTCCTCAAAGAGCAAGATGCCCTTTTCATTT
CAAAGCCCACACGAGTTCATGGCACCATTCAGTCTCC
Found at i:1425556 original size:62 final size:62
Alignment explanation
Indices: 1425456--1425889 Score: 466
Period size: 62 Copynumber: 7.0 Consensus size: 62
1425446 CCATTCAGTC
* * *
1425456 TCCTTTCAAAGCCCACACAAGTTGGTGGCACCCTTTAGTCCTCAAATAGCAGGATGCCTTTT
1 TCCTTTCAAAGCCCACACGAGTTGATGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTT
* * * *
1425518 TCATTTCAAAGCTCACACGAGTTCATGGCACCCTTTAGTCCTTAAA-ATGCAGGATGCCTTTT
1 TCCTTTCAAAGCCCACACGAGTTGATGGCACCCTTTAGTCCTCAAAGA-GCAGGATGCCTTTT
* * * * * * * * * **
1425580 TCGTTTAAAAACCCACATTG-GTTGGTGG-TCCATTTTGTCTTCAAAGAGCAGGACACCTTTT
1 TCCTTTCAAAGCCCACA-CGAGTTGATGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTT
* * * * * **
1425641 TCTTTTCAAAGCCCGCAC-ATGTTGTTGGCACCCTTTAGTCCTCAAAGAGCAAGACGTATTTT
1 TCCTTTCAAAGCCCACACGA-GTTGATGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTT
* * *
1425703 TCTTTTCAAAGCCCACA-GAAGTTGATGGGACCCTTTAGTCCTCAAATAGCAGGATGCCTTTT
1 TCCTTTCAAAGCCCACACG-AGTTGATGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTT
* * * * * *
1425765 TCCTTTCGAAGCCCGCACGAGTTGGTGGCACCCTTCAGTCCTCAAAAAGTAGGATGCCTTTT
1 TCCTTTCAAAGCCCACACGAGTTGATGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTT
*
1425827 TCCTTTCAAAGCCCACACGAGTT-AGTGGCACCCTTTAGTCCTCAAAGAGCAGCATGCCTTTT
1 TCCTTTCAAAGCCCACACGAGTTGA-TGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTT
1425889 T
1 T
1425890 AAGTGGCACC
Statistics
Matches: 305, Mismatches: 57, Indels: 20
0.80 0.15 0.05
Matches are distributed among these distances:
61 45 0.15
62 257 0.84
63 3 0.01
ACGTcount: A:0.24, C:0.26, G:0.19, T:0.31
Consensus pattern (62 bp):
TCCTTTCAAAGCCCACACGAGTTGATGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTT
Found at i:1425607 original size:164 final size:164
Alignment explanation
Indices: 1425295--1425596 Score: 408
Period size: 164 Copynumber: 1.8 Consensus size: 164
1425285 TCCTTTTTCT
* * * * * *
1425295 TTTCAAAGCCTACACGAGTTTGTGGCACCCTTTAATTCTGAAAGAGCAGGACGCCTTTTTCTTTT
1 TTTCAAAGCCCACACAAGTTGGTGGCACCCTTTAATCCTCAAAGAGCAGGACGCCTTTTTCATTT
** *
1425360 CAAAGCCCACACGAGTTTGTGACACCCTTTAGTCCTCAAAGAGCAAGATGCCCTTTTCCTTTCAA
66 CAAAGCCCACACGAGTTCATGACACCCTTTAGTCCTCAAAGAGCAAGATGCCCTTTTCCTTTAAA
**
1425425 TGCCCACACGAGTTGGTGGCACCATTCAGTCTCC
131 AACCCACACGAGTTGGTGGCACCATTCAGTCTCC
* * *
1425459 TTTCAAAGCCCACACAAGTTGGTGGCACCCTTTAGTCCTCAAATAGCAGGATGCCTTTTTCATTT
1 TTTCAAAGCCCACACAAGTTGGTGGCACCCTTTAATCCTCAAAGAGCAGGACGCCTTTTTCATTT
* * * * * *
1425524 CAAAGCTCACACGAGTTCATGGCACCCTTTAGTCCTTAAA-ATGCAGGATGCCTTTTTCGTTTAA
66 CAAAGCCCACACGAGTTCATGACACCCTTTAGTCCTCAAAGA-GCAAGATGCCCTTTTCCTTTAA
1425588 AAACCCACA
130 AAACCCACA
1425597 TTGGTTGGTG
Statistics
Matches: 117, Mismatches: 20, Indels: 2
0.84 0.14 0.01
Matches are distributed among these distances:
163 1 0.01
164 116 0.99
ACGTcount: A:0.25, C:0.28, G:0.17, T:0.29
Consensus pattern (164 bp):
TTTCAAAGCCCACACAAGTTGGTGGCACCCTTTAATCCTCAAAGAGCAGGACGCCTTTTTCATTT
CAAAGCCCACACGAGTTCATGACACCCTTTAGTCCTCAAAGAGCAAGATGCCCTTTTCCTTTAAA
AACCCACACGAGTTGGTGGCACCATTCAGTCTCC
Found at i:1425973 original size:101 final size:103
Alignment explanation
Indices: 1425789--1425978 Score: 303
Period size: 101 Copynumber: 1.9 Consensus size: 103
1425779 GCACGAGTTG
* * *
1425789 GTGGCACCCTTCAGTCCTCAAAAAGTAGGATGCCTTTTTCCTTTCAAAGCCCACACGAGTTAGTG
1 GTGGCACCCTTCAGTCCTCAAAAAGCAAGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTAGTG
1425854 GCACCCTTTAGTCCTCAAAGAGCAGCATGCCTTTTTAA
66 GCACCCTTTAGTCCTCAAAGAGCAGCATGCCTTTTTAA
* * * *
1425892 GTGGCACCCTTTAGTCCTCAAAGAGCAAGACG-CTTTTTCCTTTCGAAGCCCACAC-AGTTGGTG
1 GTGGCACCCTTCAGTCCTCAAAAAGCAAGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTAGTG
1425955 GCACCCTTTAGTCCTCAAAGAGCA
66 GCACCCTTTAGTCCTCAAAGAGCA
1425979 AGACACCTTT
Statistics
Matches: 80, Mismatches: 7, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
101 31 0.39
102 22 0.28
103 27 0.34
ACGTcount: A:0.25, C:0.29, G:0.19, T:0.27
Consensus pattern (103 bp):
GTGGCACCCTTCAGTCCTCAAAAAGCAAGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTAGTG
GCACCCTTTAGTCCTCAAAGAGCAGCATGCCTTTTTAA
Found at i:1426010 original size:163 final size:165
Alignment explanation
Indices: 1425732--1426038 Score: 458
Period size: 163 Copynumber: 1.9 Consensus size: 165
1425722 AGTTGATGGG
* * * *
1425732 ACCCTTTAGTCCTCAAATAGCAGGATGCCTTTTTCCTTTCGAAGCCCGCACGAGTTGGTGGCACC
1 ACCCTTTAGTCCTCAAAGAGCAAGACGCCTTTTTCCTTTCGAAGCCCACACGAGTTGGTGGCACC
* * ** *
1425797 CTTCAGTCCTCAAAAAGTAGGATGCCTTTTTCCTTTCAAAGCCCACACGAGTTAG-TGGCACCCT
66 CTTCAGTCCTCAAAAAGCAAGACACCTTTTTCATTTCAAAGCCCACACGAGTT-GCTGGCACCCT
1425861 TTAGTCCTCAAAGAGCAGCATGCCTTTTTAAGTGGC
130 TTAGTCCTCAAAGAGCAGCATGCCTTTTTAAGTGGC
1425897 ACCCTTTAGTCCTCAAAGAGCAAGACG-CTTTTTCCTTTCGAAGCCCACAC-AGTTGGTGGCACC
1 ACCCTTTAGTCCTCAAAGAGCAAGACGCCTTTTTCCTTTCGAAGCCCACACGAGTTGGTGGCACC
* * *
1425960 CTTTAGTCCTCAAAGAGCAAGACACCTTTTTCATTTCAAAGCCTACACGAGTTGCTGGCACCCTT
66 CTTCAGTCCTCAAAAAGCAAGACACCTTTTTCATTTCAAAGCCCACACGAGTTGCTGGCACCCTT
* *
1426025 TAGTCGTCGAAGAG
131 TAGTCCTCAAAGAG
1426039 TAAGACACCT
Statistics
Matches: 127, Mismatches: 14, Indels: 4
0.88 0.10 0.03
Matches are distributed among these distances:
162 1 0.01
163 80 0.63
164 22 0.17
165 24 0.19
ACGTcount: A:0.24, C:0.29, G:0.20, T:0.28
Consensus pattern (165 bp):
ACCCTTTAGTCCTCAAAGAGCAAGACGCCTTTTTCCTTTCGAAGCCCACACGAGTTGGTGGCACC
CTTCAGTCCTCAAAAAGCAAGACACCTTTTTCATTTCAAAGCCCACACGAGTTGCTGGCACCCTT
TAGTCCTCAAAGAGCAGCATGCCTTTTTAAGTGGC
Found at i:1426044 original size:62 final size:62
Alignment explanation
Indices: 1425892--1426277 Score: 461
Period size: 62 Copynumber: 6.3 Consensus size: 62
1425882 GCCTTTTTAA
* *
1425892 GTGGCACCCTTTAGTCCTCAAAGAGCAAGAC-GCTTTTTCCTTTCGAAGCCCACAC-AGTTG
1 GTGGCACCCTTTAGTCCTCAAAGAGCAAGACACCTTTTTCCTTTCAAAGCCCACACAAGTTG
* * *
1425952 GTGGCACCCTTTAGTCCTCAAAGAGCAAGACACCTTTTTCATTTCAAAGCCTACACGAGTTG
1 GTGGCACCCTTTAGTCCTCAAAGAGCAAGACACCTTTTTCCTTTCAAAGCCCACACAAGTTG
* * * * * *
1426014 CTGGCACCCTTTAGTCGTCGAAGAGTAAGACACCTTTCTCCTTTCAAAGCCCACACGAGTTG
1 GTGGCACCCTTTAGTCCTCAAAGAGCAAGACACCTTTTTCCTTTCAAAGCCCACACAAGTTG
* * * * * *
1426076 GTGGCACCCTTTAGTTCTAAAAGAGCAGGCCGCCTTTTTCTTTTCAAAGCCCACACAAGTTG
1 GTGGCACCCTTTAGTCCTCAAAGAGCAAGACACCTTTTTCCTTTCAAAGCCCACACAAGTTG
* * * ** * *
1426138 GTGGCACCCTTTAGTCCTCAAAAATCAGGATGCCTTTTTCCTTTCAAAGCCCGCACAAGTTT
1 GTGGCACCCTTTAGTCCTCAAAGAGCAAGACACCTTTTTCCTTTCAAAGCCCACACAAGTTG
* *** ** **
1426200 GTGGCACCCTTTAGTCCTTAAAGAGCAAGATGTCTTTTTCCTTTCAGCGCCCACACGTGTTG
1 GTGGCACCCTTTAGTCCTCAAAGAGCAAGACACCTTTTTCCTTTCAAAGCCCACACAAGTTG
*
1426262 GTGGCACCCTTCAGTC
1 GTGGCACCCTTTAGTC
1426278 TCCTTTCAAA
Statistics
Matches: 280, Mismatches: 44, Indels: 2
0.86 0.13 0.01
Matches are distributed among these distances:
60 31 0.11
61 20 0.07
62 229 0.82
ACGTcount: A:0.23, C:0.29, G:0.19, T:0.28
Consensus pattern (62 bp):
GTGGCACCCTTTAGTCCTCAAAGAGCAAGACACCTTTTTCCTTTCAAAGCCCACACAAGTTG
Found at i:1426059 original size:225 final size:227
Alignment explanation
Indices: 1425666--1426103 Score: 628
Period size: 225 Copynumber: 1.9 Consensus size: 227
1425656 CACATGTTGT
*
1425666 TGGCACCCTTTAGTCCTCAAAGAGCAAGACGTATTTTTCTTTTCAAAGCCCACAGAAGTTGATGG
1 TGGCACCCTTTAGTCCTCAAAGAGCAAGACGTATTTTTCCTTTCAAAGCCCACAGAAGTTGATGG
* * * ** * * * *
1425731 GACCCTTTAGTCCTCAAATAGCAGGATGCCTTTTTCCTTTCGAAGCCCGCACGAGTTGGTGGCAC
66 CACCCTTTAGTCCTCAAAGAGCAAGACACCTTTTTCATTTCAAAGCCCACACGAGTTGCTGGCAC
* ** *
1425796 CCTTCAGTCCTCAAAAAGTAGGATGCCTTTTTCCTTTCAAAGCCCACACGAGTTAGTGGCACCCT
131 CCTTCAGTCCTCAAAAAGTAAGACACCTTTCTCCTTTCAAAGCCCACACGAGTTAGTGGCACCCT
*
1425861 TTAGTCCTCAAAGAGCAGCATGCCTTTTTAAG
196 TTAGTCCTAAAAGAGCAGCATGCCTTTTTAAG
* * * *
1425893 TGGCACCCTTTAGTCCTCAAAGAGCAAGACG-CTTTTTCCTTTCGAAGCCCACA-CAGTTGGTGG
1 TGGCACCCTTTAGTCCTCAAAGAGCAAGACGTATTTTTCCTTTCAAAGCCCACAGAAGTTGATGG
*
1425956 CACCCTTTAGTCCTCAAAGAGCAAGACACCTTTTTCATTTCAAAGCCTACACGAGTTGCTGGCAC
66 CACCCTTTAGTCCTCAAAGAGCAAGACACCTTTTTCATTTCAAAGCCCACACGAGTTGCTGGCAC
* * * * *
1426021 CCTTTAGTCGTCGAAGAGTAAGACACCTTTCTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCT
131 CCTTCAGTCCTCAAAAAGTAAGACACCTTTCTCCTTTCAAAGCCCACACGAGTTAGTGGCACCCT
*
1426086 TTAGTTCTAAAAGAGCAG
196 TTAGTCCTAAAAGAGCAG
1426104 GCCGCCTTTT
Statistics
Matches: 185, Mismatches: 26, Indels: 2
0.87 0.12 0.01
Matches are distributed among these distances:
225 135 0.73
226 19 0.10
227 31 0.17
ACGTcount: A:0.25, C:0.28, G:0.20, T:0.28
Consensus pattern (227 bp):
TGGCACCCTTTAGTCCTCAAAGAGCAAGACGTATTTTTCCTTTCAAAGCCCACAGAAGTTGATGG
CACCCTTTAGTCCTCAAAGAGCAAGACACCTTTTTCATTTCAAAGCCCACACGAGTTGCTGGCAC
CCTTCAGTCCTCAAAAAGTAAGACACCTTTCTCCTTTCAAAGCCCACACGAGTTAGTGGCACCCT
TTAGTCCTAAAAGAGCAGCATGCCTTTTTAAG
Found at i:1426293 original size:40 final size:40
Alignment explanation
Indices: 1426238--1426317 Score: 115
Period size: 40 Copynumber: 2.0 Consensus size: 40
1426228 GATGTCTTTT
** **
1426238 TCCTTTCAGCGCCCACACGTGTTGGTGGCACCCTTCAGTC
1 TCCTTTCAAAGCCCACACAAGTTGGTGGCACCCTTCAGTC
*
1426278 TCCTTTCAAAGCCCACACAAGTTGGTGGCACGCTTCAGTC
1 TCCTTTCAAAGCCCACACAAGTTGGTGGCACCCTTCAGTC
1426318 CTCAAAGAGC
Statistics
Matches: 35, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
40 35 1.00
ACGTcount: A:0.17, C:0.35, G:0.21, T:0.26
Consensus pattern (40 bp):
TCCTTTCAAAGCCCACACAAGTTGGTGGCACCCTTCAGTC
Found at i:1426358 original size:102 final size:102
Alignment explanation
Indices: 1426176--1426366 Score: 274
Period size: 102 Copynumber: 1.9 Consensus size: 102
1426166 GATGCCTTTT
* * * * * *
1426176 TCCTTTCAAAGCCCGCACAAGTTTGTGGCACCCTTTAGTCCTTAAAGAGCAAGATGTCTTTTTCC
1 TCCTTTCAAAGCCCACACAAGTTGGTGGCACCCTTCAGTCCTCAAAGAGCAAGATGCCTTTCTCC
** * *
1426241 TTTCAGCGCCCACACGTGTTGGTGGCACCCTTCAGTC
66 TTTCAAAGCCAACACGAGTTGGTGGCACCCTTCAGTC
* *
1426278 TCCTTTCAAAGCCCACACAAGTTGGTGGCACGCTTCAGTCCTCAAAGAGCAGGATGCCTTTCTCC
1 TCCTTTCAAAGCCCACACAAGTTGGTGGCACCCTTCAGTCCTCAAAGAGCAAGATGCCTTTCTCC
1426343 TTTCAAAGCCAACACGAGTTGGTG
66 TTTCAAAGCCAACACGAGTTGGTG
1426367 ACATCTTTTA
Statistics
Matches: 77, Mismatches: 12, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
102 77 1.00
ACGTcount: A:0.22, C:0.30, G:0.20, T:0.28
Consensus pattern (102 bp):
TCCTTTCAAAGCCCACACAAGTTGGTGGCACCCTTCAGTCCTCAAAGAGCAAGATGCCTTTCTCC
TTTCAAAGCCAACACGAGTTGGTGGCACCCTTCAGTC
Found at i:1426380 original size:62 final size:62
Alignment explanation
Indices: 1426278--1426618 Score: 364
Period size: 62 Copynumber: 5.5 Consensus size: 62
1426268 CCCTTCAGTC
* * * *
1426278 TCCTTTCAAAGCCCACACAAGTTGGTGGCACGCTTCAGTCCTCAAAGAGCAGGATGCCTTTC
1 TCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTT
* * * * * * *
1426340 TCCTTTCAAAGCCAACACGAGTTGGTGACATCTTTTAGTCCTCAAAAAGCTGGTTGCCTTTT
1 TCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTT
* * * * ** *
1426402 TCGTTTCAAA-CCTACACGGGTTGGTGGC-CTCATTTTTTCCTCAAAGAGTAGGACT-CCTTTT
1 TCCTTTCAAAGCCCACACGAGTTGGTGGCAC-CCTTTAGTCCTCAAAGAGCAGGA-TGCCTTTT
* * * * * * *
1426463 TCTTTTCAAAGCCTACACGAGTTTGTGGCACCCTTTAATTCTGAAAGAGCAGGACGCCTTTT
1 TCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTT
* * * * *
1426525 TCTTTTCAAAGCCCACACGAGTTTGTGACACCCTTTAGTCCTCAAAGAGCAAGATGCCCTTT
1 TCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTT
*
1426587 TCCTTTCAATGCCCACACGAGTTGGTGGCACC
1 TCCTTTCAAAGCCCACACGAGTTGGTGGCACC
1426619 ATTCAGTCTC
Statistics
Matches: 229, Mismatches: 45, Indels: 10
0.81 0.16 0.04
Matches are distributed among these distances:
61 46 0.20
62 182 0.79
63 1 0.00
ACGTcount: A:0.23, C:0.27, G:0.19, T:0.30
Consensus pattern (62 bp):
TCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTT
Found at i:1426522 original size:123 final size:124
Alignment explanation
Indices: 1426281--1426618 Score: 351
Period size: 123 Copynumber: 2.7 Consensus size: 124
1426271 TTCAGTCTCC
* * * *
1426281 TTTCAAAGCCCACACAAGTTGGTGGCACGC-TTCAGTCCTCAAAGAGCAGGATGCCTTTCTCCTT
1 TTTCAAAGCCCACACGAGTTGGTGACAC-CATTTAGTCCTCAAAGAGCAGGATGCCTTTTTCCTT
* * * * * **
1426345 TCAAAGCCAACACGAGTTGGTGACATCTTTTAGTCCTCAAAAAGCTGGTTGCCTTTTTCG
65 TCAAAGCCAACACGAGTTGGTGGCACCCTTTAATCCTCAAAAAGCAGGACGCCTTTTTCG
* * * ** * *
1426405 TTTCAAA-CCTACACGGGTTGGTGGC-CTCATTTTTTCCTCAAAGAGTAGGACT-CCTTTTTCTT
1 TTTCAAAGCCCACACGAGTTGGTGACAC-CATTTAGTCCTCAAAGAGCAGGA-TGCCTTTTTCCT
* * * * * *
1426467 TTCAAAGCCTACACGAGTTTGTGGCACCCTTTAATTCTGAAAGAGCAGGACGCCTTTTTCT
64 TTCAAAGCCAACACGAGTTGGTGGCACCCTTTAATCCTCAAAAAGCAGGACGCCTTTTTCG
* * * *
1426528 TTTCAAAGCCCACACGAGTTTGTGACACCCTTTAGTCCTCAAAGAGCAAGATGCCCTTTTCCTTT
1 TTTCAAAGCCCACACGAGTTGGTGACACCATTTAGTCCTCAAAGAGCAGGATGCCTTTTTCCTTT
* *
1426593 CAATGCCCACACGAGTTGGTGGCACC
66 CAAAGCCAACACGAGTTGGTGGCACC
1426619 ATTCAGTCTC
Statistics
Matches: 172, Mismatches: 37, Indels: 10
0.79 0.17 0.05
Matches are distributed among these distances:
122 2 0.01
123 96 0.56
124 73 0.42
125 1 0.01
ACGTcount: A:0.23, C:0.27, G:0.19, T:0.30
Consensus pattern (124 bp):
TTTCAAAGCCCACACGAGTTGGTGACACCATTTAGTCCTCAAAGAGCAGGATGCCTTTTTCCTTT
CAAAGCCAACACGAGTTGGTGGCACCCTTTAATCCTCAAAAAGCAGGACGCCTTTTTCG
Found at i:1426706 original size:102 final size:102
Alignment explanation
Indices: 1426528--1426720 Score: 287
Period size: 102 Copynumber: 1.9 Consensus size: 102
1426518 GCCTTTTTCT
* * *
1426528 TTTCAAAGCCCACACGAGTTTGTGACACCCTTTAGTCCTCAAAGAGCAAGATGCCCTTTTCCTTT
1 TTTCAAAGCCCACACAAGTTGGTGACACCCTTTAGTCCTCAAAGAGCAAGATGCCCTTTTCATTT
* **
1426593 CAATGCCCACACGAGTTGGTGGCACCATTCAGTCTCC
66 CAAAGCCCACACGAGTTCATGGCACCATTCAGTCTCC
* * * *
1426630 TTTCAAAGCCCACACAAGTTGGTGGCACCCTTTAGTCCTCAAATAGCAGGATGCCTTTTTCATTT
1 TTTCAAAGCCCACACAAGTTGGTGACACCCTTTAGTCCTCAAAGAGCAAGATGCCCTTTTCATTT
*
1426695 CAAAGCTCACACGAGTTCATGGCACC
66 CAAAGCCCACACGAGTTCATGGCACC
1426721 CTTTAGTCCT
Statistics
Matches: 80, Mismatches: 11, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
102 80 1.00
ACGTcount: A:0.25, C:0.30, G:0.18, T:0.27
Consensus pattern (102 bp):
TTTCAAAGCCCACACAAGTTGGTGACACCCTTTAGTCCTCAAAGAGCAAGATGCCCTTTTCATTT
CAAAGCCCACACGAGTTCATGGCACCATTCAGTCTCC
Found at i:1426727 original size:62 final size:62
Alignment explanation
Indices: 1426627--1427060 Score: 466
Period size: 62 Copynumber: 7.0 Consensus size: 62
1426617 CCATTCAGTC
* * *
1426627 TCCTTTCAAAGCCCACACAAGTTGGTGGCACCCTTTAGTCCTCAAATAGCAGGATGCCTTTT
1 TCCTTTCAAAGCCCACACGAGTTGATGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTT
* * * *
1426689 TCATTTCAAAGCTCACACGAGTTCATGGCACCCTTTAGTCCTTAAA-ATGCAGGATGCCTTTT
1 TCCTTTCAAAGCCCACACGAGTTGATGGCACCCTTTAGTCCTCAAAGA-GCAGGATGCCTTTT
* * * * * * * * * **
1426751 TCGTTTAAAAACCCACATTG-GTTGGTGG-TCCATTTTGTCTTCAAAGAGCAGGACACCTTTT
1 TCCTTTCAAAGCCCACA-CGAGTTGATGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTT
* * * * * **
1426812 TCTTTTCAAAGCCCGCAC-ATGTTGTTGGCACCCTTTAGTCCTCAAAGAGCAAGACGTATTTT
1 TCCTTTCAAAGCCCACACGA-GTTGATGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTT
* * *
1426874 TCTTTTCAAAGCCCACA-GAAGTTGATGGGACCCTTTAGTCCTCAAATAGCAGGATGCCTTTT
1 TCCTTTCAAAGCCCACACG-AGTTGATGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTT
* * * * * *
1426936 TCCTTTCGAAGCCCGCACGAGTTGGTGGCACCCTTCAGTCCTCAAAAAGTAGGATGCCTTTT
1 TCCTTTCAAAGCCCACACGAGTTGATGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTT
*
1426998 TCCTTTCAAAGCCCACACGAGTT-AGTGGCACCCTTTAGTCCTCAAAGAGCAGCATGCCTTTT
1 TCCTTTCAAAGCCCACACGAGTTGA-TGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTT
1427060 T
1 T
1427061 AAGTGGCACC
Statistics
Matches: 305, Mismatches: 57, Indels: 20
0.80 0.15 0.05
Matches are distributed among these distances:
61 45 0.15
62 257 0.84
63 3 0.01
ACGTcount: A:0.24, C:0.26, G:0.19, T:0.31
Consensus pattern (62 bp):
TCCTTTCAAAGCCCACACGAGTTGATGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTT
Found at i:1426778 original size:164 final size:164
Alignment explanation
Indices: 1426466--1426767 Score: 408
Period size: 164 Copynumber: 1.8 Consensus size: 164
1426456 TCCTTTTTCT
* * * * * *
1426466 TTTCAAAGCCTACACGAGTTTGTGGCACCCTTTAATTCTGAAAGAGCAGGACGCCTTTTTCTTTT
1 TTTCAAAGCCCACACAAGTTGGTGGCACCCTTTAATCCTCAAAGAGCAGGACGCCTTTTTCATTT
** *
1426531 CAAAGCCCACACGAGTTTGTGACACCCTTTAGTCCTCAAAGAGCAAGATGCCCTTTTCCTTTCAA
66 CAAAGCCCACACGAGTTCATGACACCCTTTAGTCCTCAAAGAGCAAGATGCCCTTTTCCTTTAAA
**
1426596 TGCCCACACGAGTTGGTGGCACCATTCAGTCTCC
131 AACCCACACGAGTTGGTGGCACCATTCAGTCTCC
* * *
1426630 TTTCAAAGCCCACACAAGTTGGTGGCACCCTTTAGTCCTCAAATAGCAGGATGCCTTTTTCATTT
1 TTTCAAAGCCCACACAAGTTGGTGGCACCCTTTAATCCTCAAAGAGCAGGACGCCTTTTTCATTT
* * * * * *
1426695 CAAAGCTCACACGAGTTCATGGCACCCTTTAGTCCTTAAA-ATGCAGGATGCCTTTTTCGTTTAA
66 CAAAGCCCACACGAGTTCATGACACCCTTTAGTCCTCAAAGA-GCAAGATGCCCTTTTCCTTTAA
1426759 AAACCCACA
130 AAACCCACA
1426768 TTGGTTGGTG
Statistics
Matches: 117, Mismatches: 20, Indels: 2
0.84 0.14 0.01
Matches are distributed among these distances:
163 1 0.01
164 116 0.99
ACGTcount: A:0.25, C:0.28, G:0.17, T:0.29
Consensus pattern (164 bp):
TTTCAAAGCCCACACAAGTTGGTGGCACCCTTTAATCCTCAAAGAGCAGGACGCCTTTTTCATTT
CAAAGCCCACACGAGTTCATGACACCCTTTAGTCCTCAAAGAGCAAGATGCCCTTTTCCTTTAAA
AACCCACACGAGTTGGTGGCACCATTCAGTCTCC
Found at i:1427144 original size:101 final size:103
Alignment explanation
Indices: 1426960--1427149 Score: 303
Period size: 101 Copynumber: 1.9 Consensus size: 103
1426950 GCACGAGTTG
* * *
1426960 GTGGCACCCTTCAGTCCTCAAAAAGTAGGATGCCTTTTTCCTTTCAAAGCCCACACGAGTTAGTG
1 GTGGCACCCTTCAGTCCTCAAAAAGCAAGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTAGTG
1427025 GCACCCTTTAGTCCTCAAAGAGCAGCATGCCTTTTTAA
66 GCACCCTTTAGTCCTCAAAGAGCAGCATGCCTTTTTAA
* * * *
1427063 GTGGCACCCTTTAGTCCTCAAAGAGCAAGACG-CTTTTTCCTTTCGAAGCCCACAC-AGTTGGTG
1 GTGGCACCCTTCAGTCCTCAAAAAGCAAGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTAGTG
1427126 GCACCCTTTAGTCCTCAAAGAGCA
66 GCACCCTTTAGTCCTCAAAGAGCA
1427150 AGACACCTTT
Statistics
Matches: 80, Mismatches: 7, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
101 31 0.39
102 22 0.28
103 27 0.34
ACGTcount: A:0.25, C:0.29, G:0.19, T:0.27
Consensus pattern (103 bp):
GTGGCACCCTTCAGTCCTCAAAAAGCAAGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTAGTG
GCACCCTTTAGTCCTCAAAGAGCAGCATGCCTTTTTAA
Found at i:1427181 original size:163 final size:165
Alignment explanation
Indices: 1426903--1427209 Score: 458
Period size: 163 Copynumber: 1.9 Consensus size: 165
1426893 AGTTGATGGG
* * * *
1426903 ACCCTTTAGTCCTCAAATAGCAGGATGCCTTTTTCCTTTCGAAGCCCGCACGAGTTGGTGGCACC
1 ACCCTTTAGTCCTCAAAGAGCAAGACGCCTTTTTCCTTTCGAAGCCCACACGAGTTGGTGGCACC
* * ** *
1426968 CTTCAGTCCTCAAAAAGTAGGATGCCTTTTTCCTTTCAAAGCCCACACGAGTTAG-TGGCACCCT
66 CTTCAGTCCTCAAAAAGCAAGACACCTTTTTCATTTCAAAGCCCACACGAGTT-GCTGGCACCCT
1427032 TTAGTCCTCAAAGAGCAGCATGCCTTTTTAAGTGGC
130 TTAGTCCTCAAAGAGCAGCATGCCTTTTTAAGTGGC
1427068 ACCCTTTAGTCCTCAAAGAGCAAGACG-CTTTTTCCTTTCGAAGCCCACAC-AGTTGGTGGCACC
1 ACCCTTTAGTCCTCAAAGAGCAAGACGCCTTTTTCCTTTCGAAGCCCACACGAGTTGGTGGCACC
* * *
1427131 CTTTAGTCCTCAAAGAGCAAGACACCTTTTTCATTTCAAAGCCTACACGAGTTGCTGGCACCCTT
66 CTTCAGTCCTCAAAAAGCAAGACACCTTTTTCATTTCAAAGCCCACACGAGTTGCTGGCACCCTT
* *
1427196 TAGTCGTCGAAGAG
131 TAGTCCTCAAAGAG
1427210 TAAGACACCT
Statistics
Matches: 127, Mismatches: 14, Indels: 4
0.88 0.10 0.03
Matches are distributed among these distances:
162 1 0.01
163 80 0.63
164 22 0.17
165 24 0.19
ACGTcount: A:0.24, C:0.29, G:0.20, T:0.28
Consensus pattern (165 bp):
ACCCTTTAGTCCTCAAAGAGCAAGACGCCTTTTTCCTTTCGAAGCCCACACGAGTTGGTGGCACC
CTTCAGTCCTCAAAAAGCAAGACACCTTTTTCATTTCAAAGCCCACACGAGTTGCTGGCACCCTT
TAGTCCTCAAAGAGCAGCATGCCTTTTTAAGTGGC
Found at i:1427215 original size:62 final size:62
Alignment explanation
Indices: 1427063--1427448 Score: 461
Period size: 62 Copynumber: 6.3 Consensus size: 62
1427053 GCCTTTTTAA
* *
1427063 GTGGCACCCTTTAGTCCTCAAAGAGCAAGAC-GCTTTTTCCTTTCGAAGCCCACAC-AGTTG
1 GTGGCACCCTTTAGTCCTCAAAGAGCAAGACACCTTTTTCCTTTCAAAGCCCACACAAGTTG
* * *
1427123 GTGGCACCCTTTAGTCCTCAAAGAGCAAGACACCTTTTTCATTTCAAAGCCTACACGAGTTG
1 GTGGCACCCTTTAGTCCTCAAAGAGCAAGACACCTTTTTCCTTTCAAAGCCCACACAAGTTG
* * * * * *
1427185 CTGGCACCCTTTAGTCGTCGAAGAGTAAGACACCTTTCTCCTTTCAAAGCCCACACGAGTTG
1 GTGGCACCCTTTAGTCCTCAAAGAGCAAGACACCTTTTTCCTTTCAAAGCCCACACAAGTTG
* * * * * *
1427247 GTGGCACCCTTTAGTTCTAAAAGAGCAGGCCGCCTTTTTCTTTTCAAAGCCCACACAAGTTG
1 GTGGCACCCTTTAGTCCTCAAAGAGCAAGACACCTTTTTCCTTTCAAAGCCCACACAAGTTG
* * * ** * *
1427309 GTGGCACCCTTTAGTCCTCAAAAATCAGGATGCCTTTTTCCTTTCAAAGCCCGCACAAGTTT
1 GTGGCACCCTTTAGTCCTCAAAGAGCAAGACACCTTTTTCCTTTCAAAGCCCACACAAGTTG
* *** ** **
1427371 GTGGCACCCTTTAGTCCTTAAAGAGCAAGATGTCTTTTTCCTTTCAGCGCCCACACGTGTTG
1 GTGGCACCCTTTAGTCCTCAAAGAGCAAGACACCTTTTTCCTTTCAAAGCCCACACAAGTTG
*
1427433 GTGGCACCCTTCAGTC
1 GTGGCACCCTTTAGTC
1427449 TCCTTTCAAA
Statistics
Matches: 280, Mismatches: 44, Indels: 2
0.86 0.13 0.01
Matches are distributed among these distances:
60 31 0.11
61 20 0.07
62 229 0.82
ACGTcount: A:0.23, C:0.29, G:0.19, T:0.28
Consensus pattern (62 bp):
GTGGCACCCTTTAGTCCTCAAAGAGCAAGACACCTTTTTCCTTTCAAAGCCCACACAAGTTG
Found at i:1427230 original size:225 final size:227
Alignment explanation
Indices: 1426837--1427274 Score: 628
Period size: 225 Copynumber: 1.9 Consensus size: 227
1426827 CACATGTTGT
*
1426837 TGGCACCCTTTAGTCCTCAAAGAGCAAGACGTATTTTTCTTTTCAAAGCCCACAGAAGTTGATGG
1 TGGCACCCTTTAGTCCTCAAAGAGCAAGACGTATTTTTCCTTTCAAAGCCCACAGAAGTTGATGG
* * * ** * * * *
1426902 GACCCTTTAGTCCTCAAATAGCAGGATGCCTTTTTCCTTTCGAAGCCCGCACGAGTTGGTGGCAC
66 CACCCTTTAGTCCTCAAAGAGCAAGACACCTTTTTCATTTCAAAGCCCACACGAGTTGCTGGCAC
* ** *
1426967 CCTTCAGTCCTCAAAAAGTAGGATGCCTTTTTCCTTTCAAAGCCCACACGAGTTAGTGGCACCCT
131 CCTTCAGTCCTCAAAAAGTAAGACACCTTTCTCCTTTCAAAGCCCACACGAGTTAGTGGCACCCT
*
1427032 TTAGTCCTCAAAGAGCAGCATGCCTTTTTAAG
196 TTAGTCCTAAAAGAGCAGCATGCCTTTTTAAG
* * * *
1427064 TGGCACCCTTTAGTCCTCAAAGAGCAAGACG-CTTTTTCCTTTCGAAGCCCACA-CAGTTGGTGG
1 TGGCACCCTTTAGTCCTCAAAGAGCAAGACGTATTTTTCCTTTCAAAGCCCACAGAAGTTGATGG
*
1427127 CACCCTTTAGTCCTCAAAGAGCAAGACACCTTTTTCATTTCAAAGCCTACACGAGTTGCTGGCAC
66 CACCCTTTAGTCCTCAAAGAGCAAGACACCTTTTTCATTTCAAAGCCCACACGAGTTGCTGGCAC
* * * * *
1427192 CCTTTAGTCGTCGAAGAGTAAGACACCTTTCTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCT
131 CCTTCAGTCCTCAAAAAGTAAGACACCTTTCTCCTTTCAAAGCCCACACGAGTTAGTGGCACCCT
*
1427257 TTAGTTCTAAAAGAGCAG
196 TTAGTCCTAAAAGAGCAG
1427275 GCCGCCTTTT
Statistics
Matches: 185, Mismatches: 26, Indels: 2
0.87 0.12 0.01
Matches are distributed among these distances:
225 135 0.73
226 19 0.10
227 31 0.17
ACGTcount: A:0.25, C:0.28, G:0.20, T:0.28
Consensus pattern (227 bp):
TGGCACCCTTTAGTCCTCAAAGAGCAAGACGTATTTTTCCTTTCAAAGCCCACAGAAGTTGATGG
CACCCTTTAGTCCTCAAAGAGCAAGACACCTTTTTCATTTCAAAGCCCACACGAGTTGCTGGCAC
CCTTCAGTCCTCAAAAAGTAAGACACCTTTCTCCTTTCAAAGCCCACACGAGTTAGTGGCACCCT
TTAGTCCTAAAAGAGCAGCATGCCTTTTTAAG
Found at i:1427464 original size:40 final size:40
Alignment explanation
Indices: 1427409--1427488 Score: 124
Period size: 40 Copynumber: 2.0 Consensus size: 40
1427399 GATGTCTTTT
** **
1427409 TCCTTTCAGCGCCCACACGTGTTGGTGGCACCCTTCAGTC
1 TCCTTTCAAAGCCCACACAAGTTGGTGGCACCCTTCAGTC
1427449 TCCTTTCAAAGCCCACACAAGTTGGTGGCACCCTTCAGTC
1 TCCTTTCAAAGCCCACACAAGTTGGTGGCACCCTTCAGTC
1427489 CTCAAAGAGC
Statistics
Matches: 36, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
40 36 1.00
ACGTcount: A:0.17, C:0.36, G:0.20, T:0.26
Consensus pattern (40 bp):
TCCTTTCAAAGCCCACACAAGTTGGTGGCACCCTTCAGTC
Found at i:1427529 original size:102 final size:102
Alignment explanation
Indices: 1427347--1427537 Score: 283
Period size: 102 Copynumber: 1.9 Consensus size: 102
1427337 GATGCCTTTT
* * * * * *
1427347 TCCTTTCAAAGCCCGCACAAGTTTGTGGCACCCTTTAGTCCTTAAAGAGCAAGATGTCTTTTTCC
1 TCCTTTCAAAGCCCACACAAGTTGGTGGCACCCTTCAGTCCTCAAAGAGCAAGATGCCTTTCTCC
** * *
1427412 TTTCAGCGCCCACACGTGTTGGTGGCACCCTTCAGTC
66 TTTCAAAGCCAACACGAGTTGGTGGCACCCTTCAGTC
*
1427449 TCCTTTCAAAGCCCACACAAGTTGGTGGCACCCTTCAGTCCTCAAAGAGCAGGATGCCTTTCTCC
1 TCCTTTCAAAGCCCACACAAGTTGGTGGCACCCTTCAGTCCTCAAAGAGCAAGATGCCTTTCTCC
1427514 TTTCAAAGCCAACACGAGTTGGTG
66 TTTCAAAGCCAACACGAGTTGGTG
1427538 ACATCTTTTA
Statistics
Matches: 78, Mismatches: 11, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
102 78 1.00
ACGTcount: A:0.22, C:0.30, G:0.20, T:0.28
Consensus pattern (102 bp):
TCCTTTCAAAGCCCACACAAGTTGGTGGCACCCTTCAGTCCTCAAAGAGCAAGATGCCTTTCTCC
TTTCAAAGCCAACACGAGTTGGTGGCACCCTTCAGTC
Found at i:1427551 original size:62 final size:62
Alignment explanation
Indices: 1427449--1427789 Score: 382
Period size: 62 Copynumber: 5.5 Consensus size: 62
1427439 CCCTTCAGTC
* * *
1427449 TCCTTTCAAAGCCCACACAAGTTGGTGGCACCCTTCAGTCCTCAAAGAGCAGGATGCCTTTC
1 TCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTT
* * * * * *
1427511 TCCTTTCAAAGCCAACACGAGTTGGTGACATCTTTTAGTCCTCAAAAAGCAGGTTGCCTTTT
1 TCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTT
* * * * ** *
1427573 TCGTTTCAAA-CCTACACGGGTTGGTGGC-CTCATTTTTTCCTCAAAGAGTAGGACT-CCTTTT
1 TCCTTTCAAAGCCCACACGAGTTGGTGGCAC-CCTTTAGTCCTCAAAGAGCAGGA-TGCCTTTT
* * * * * * *
1427634 TCTTTTCAAAGCCTACACGAGTTTGTGGCACCCTTTAATTCTGAAAGAGCAGGACGCCTTTT
1 TCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTT
* * * * *
1427696 TCTTTTCAAAGCCCACACGAGTTTGTGACACCCTTTAGTCCTCAAAGAGCAAGATGCCCTTT
1 TCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTT
*
1427758 TCCTTTCAATGCCCACACGAGTTGGTGGCACC
1 TCCTTTCAAAGCCCACACGAGTTGGTGGCACC
1427790 ATTCAGTCTC
Statistics
Matches: 232, Mismatches: 42, Indels: 10
0.82 0.15 0.04
Matches are distributed among these distances:
61 47 0.20
62 184 0.79
63 1 0.00
ACGTcount: A:0.23, C:0.28, G:0.19, T:0.30
Consensus pattern (62 bp):
TCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTT
Found at i:1427693 original size:123 final size:124
Alignment explanation
Indices: 1427452--1427789 Score: 367
Period size: 123 Copynumber: 2.7 Consensus size: 124
1427442 TTCAGTCTCC
* * * * *
1427452 TTTCAAAGCCCACACAAGTTGGTGGCACCCTTCAGTCCTCAAAGAGCAGGATGCCTTTCTCCTTT
1 TTTCAAAGCCCACACGAGTTGGTGACACCATTTAGTCCTCAAAGAGCAGGATGCCTTTTTCCTTT
* * * * **
1427517 CAAAGCCAACACGAGTTGGTGACATCTTTTAGTCCTCAAAAAGCAGGTTGCCTTTTTCG
66 CAAAGCCAACACGAGTTGGTGGCACCCTTTAATCCTCAAAAAGCAGGACGCCTTTTTCG
* * * ** * *
1427576 TTTCAAA-CCTACACGGGTTGGTGGC-CTCATTTTTTCCTCAAAGAGTAGGACT-CCTTTTTCTT
1 TTTCAAAGCCCACACGAGTTGGTGACAC-CATTTAGTCCTCAAAGAGCAGGA-TGCCTTTTTCCT
* * * * * *
1427638 TTCAAAGCCTACACGAGTTTGTGGCACCCTTTAATTCTGAAAGAGCAGGACGCCTTTTTCT
64 TTCAAAGCCAACACGAGTTGGTGGCACCCTTTAATCCTCAAAAAGCAGGACGCCTTTTTCG
* * * *
1427699 TTTCAAAGCCCACACGAGTTTGTGACACCCTTTAGTCCTCAAAGAGCAAGATGCCCTTTTCCTTT
1 TTTCAAAGCCCACACGAGTTGGTGACACCATTTAGTCCTCAAAGAGCAGGATGCCTTTTTCCTTT
* *
1427764 CAATGCCCACACGAGTTGGTGGCACC
66 CAAAGCCAACACGAGTTGGTGGCACC
1427790 ATTCAGTCTC
Statistics
Matches: 173, Mismatches: 36, Indels: 10
0.79 0.16 0.05
Matches are distributed among these distances:
122 1 0.01
123 98 0.57
124 73 0.42
125 1 0.01
ACGTcount: A:0.24, C:0.27, G:0.19, T:0.30
Consensus pattern (124 bp):
TTTCAAAGCCCACACGAGTTGGTGACACCATTTAGTCCTCAAAGAGCAGGATGCCTTTTTCCTTT
CAAAGCCAACACGAGTTGGTGGCACCCTTTAATCCTCAAAAAGCAGGACGCCTTTTTCG
Found at i:1427877 original size:102 final size:102
Alignment explanation
Indices: 1427699--1427891 Score: 287
Period size: 102 Copynumber: 1.9 Consensus size: 102
1427689 GCCTTTTTCT
* * *
1427699 TTTCAAAGCCCACACGAGTTTGTGACACCCTTTAGTCCTCAAAGAGCAAGATGCCCTTTTCCTTT
1 TTTCAAAGCCCACACAAGTTGGTGACACCCTTTAGTCCTCAAAGAGCAAGATGCCCTTTTCATTT
* **
1427764 CAATGCCCACACGAGTTGGTGGCACCATTCAGTCTCC
66 CAAAGCCCACACGAGTTCATGGCACCATTCAGTCTCC
* * * *
1427801 TTTCAAAGCCCACACAAGTTGGTGGCACCCTTTAGTCCTCAAATAGCAGGATGCCTTTTTCATTT
1 TTTCAAAGCCCACACAAGTTGGTGACACCCTTTAGTCCTCAAAGAGCAAGATGCCCTTTTCATTT
*
1427866 CAAAGCTCACACGAGTTCATGGCACC
66 CAAAGCCCACACGAGTTCATGGCACC
1427892 CTTTAGTCCT
Statistics
Matches: 80, Mismatches: 11, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
102 80 1.00
ACGTcount: A:0.25, C:0.30, G:0.18, T:0.27
Consensus pattern (102 bp):
TTTCAAAGCCCACACAAGTTGGTGACACCCTTTAGTCCTCAAAGAGCAAGATGCCCTTTTCATTT
CAAAGCCCACACGAGTTCATGGCACCATTCAGTCTCC
Found at i:1427898 original size:62 final size:62
Alignment explanation
Indices: 1427798--1428231 Score: 466
Period size: 62 Copynumber: 7.0 Consensus size: 62
1427788 CCATTCAGTC
* * *
1427798 TCCTTTCAAAGCCCACACAAGTTGGTGGCACCCTTTAGTCCTCAAATAGCAGGATGCCTTTT
1 TCCTTTCAAAGCCCACACGAGTTGATGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTT
* * * *
1427860 TCATTTCAAAGCTCACACGAGTTCATGGCACCCTTTAGTCCTTAAA-ATGCAGGATGCCTTTT
1 TCCTTTCAAAGCCCACACGAGTTGATGGCACCCTTTAGTCCTCAAAGA-GCAGGATGCCTTTT
* * * * * * * * * **
1427922 TCGTTTAAAAACCCACATTG-GTTGGTGG-TCCATTTTGTCTTCAAAGAGCAGGACACCTTTT
1 TCCTTTCAAAGCCCACA-CGAGTTGATGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTT
* * * * * **
1427983 TCTTTTCAAAGCCCGCAC-ATGTTGTTGGCACCCTTTAGTCCTCAAAGAGCAAGACGTATTTT
1 TCCTTTCAAAGCCCACACGA-GTTGATGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTT
* * *
1428045 TCTTTTCAAAGCCCACA-GAAGTTGATGGGACCCTTTAGTCCTCAAATAGCAGGATGCCTTTT
1 TCCTTTCAAAGCCCACACG-AGTTGATGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTT
* * * * * *
1428107 TCCTTTCGAAGCCCGCACGAGTTGGTGGCACCCTTCAGTCCTCAAAAAGTAGGATGCCTTTT
1 TCCTTTCAAAGCCCACACGAGTTGATGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTT
*
1428169 TCCTTTCAAAGCCCACACGAGTT-AGTGGCACCCTTTAGTCCTCAAAGAGCAGCATGCCTTTT
1 TCCTTTCAAAGCCCACACGAGTTGA-TGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTT
1428231 T
1 T
1428232 AAGTGGCACC
Statistics
Matches: 305, Mismatches: 57, Indels: 20
0.80 0.15 0.05
Matches are distributed among these distances:
61 45 0.15
62 257 0.84
63 3 0.01
ACGTcount: A:0.24, C:0.26, G:0.19, T:0.31
Consensus pattern (62 bp):
TCCTTTCAAAGCCCACACGAGTTGATGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTT
Found at i:1427949 original size:164 final size:164
Alignment explanation
Indices: 1427637--1427938 Score: 408
Period size: 164 Copynumber: 1.8 Consensus size: 164
1427627 TCCTTTTTCT
* * * * * *
1427637 TTTCAAAGCCTACACGAGTTTGTGGCACCCTTTAATTCTGAAAGAGCAGGACGCCTTTTTCTTTT
1 TTTCAAAGCCCACACAAGTTGGTGGCACCCTTTAATCCTCAAAGAGCAGGACGCCTTTTTCATTT
** *
1427702 CAAAGCCCACACGAGTTTGTGACACCCTTTAGTCCTCAAAGAGCAAGATGCCCTTTTCCTTTCAA
66 CAAAGCCCACACGAGTTCATGACACCCTTTAGTCCTCAAAGAGCAAGATGCCCTTTTCCTTTAAA
**
1427767 TGCCCACACGAGTTGGTGGCACCATTCAGTCTCC
131 AACCCACACGAGTTGGTGGCACCATTCAGTCTCC
* * *
1427801 TTTCAAAGCCCACACAAGTTGGTGGCACCCTTTAGTCCTCAAATAGCAGGATGCCTTTTTCATTT
1 TTTCAAAGCCCACACAAGTTGGTGGCACCCTTTAATCCTCAAAGAGCAGGACGCCTTTTTCATTT
* * * * * *
1427866 CAAAGCTCACACGAGTTCATGGCACCCTTTAGTCCTTAAA-ATGCAGGATGCCTTTTTCGTTTAA
66 CAAAGCCCACACGAGTTCATGACACCCTTTAGTCCTCAAAGA-GCAAGATGCCCTTTTCCTTTAA
1427930 AAACCCACA
130 AAACCCACA
1427939 TTGGTTGGTG
Statistics
Matches: 117, Mismatches: 20, Indels: 2
0.84 0.14 0.01
Matches are distributed among these distances:
163 1 0.01
164 116 0.99
ACGTcount: A:0.25, C:0.28, G:0.17, T:0.29
Consensus pattern (164 bp):
TTTCAAAGCCCACACAAGTTGGTGGCACCCTTTAATCCTCAAAGAGCAGGACGCCTTTTTCATTT
CAAAGCCCACACGAGTTCATGACACCCTTTAGTCCTCAAAGAGCAAGATGCCCTTTTCCTTTAAA
AACCCACACGAGTTGGTGGCACCATTCAGTCTCC
Found at i:1428315 original size:101 final size:103
Alignment explanation
Indices: 1428131--1428320 Score: 303
Period size: 101 Copynumber: 1.9 Consensus size: 103
1428121 GCACGAGTTG
* * *
1428131 GTGGCACCCTTCAGTCCTCAAAAAGTAGGATGCCTTTTTCCTTTCAAAGCCCACACGAGTTAGTG
1 GTGGCACCCTTCAGTCCTCAAAAAGCAAGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTAGTG
1428196 GCACCCTTTAGTCCTCAAAGAGCAGCATGCCTTTTTAA
66 GCACCCTTTAGTCCTCAAAGAGCAGCATGCCTTTTTAA
* * * *
1428234 GTGGCACCCTTTAGTCCTCAAAGAGCAAGACG-CTTTTTCCTTTCGAAGCCCACAC-AGTTGGTG
1 GTGGCACCCTTCAGTCCTCAAAAAGCAAGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTAGTG
1428297 GCACCCTTTAGTCCTCAAAGAGCA
66 GCACCCTTTAGTCCTCAAAGAGCA
1428321 AGACACCTTT
Statistics
Matches: 80, Mismatches: 7, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
101 31 0.39
102 22 0.28
103 27 0.34
ACGTcount: A:0.25, C:0.29, G:0.19, T:0.27
Consensus pattern (103 bp):
GTGGCACCCTTCAGTCCTCAAAAAGCAAGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTAGTG
GCACCCTTTAGTCCTCAAAGAGCAGCATGCCTTTTTAA
Found at i:1428352 original size:163 final size:165
Alignment explanation
Indices: 1428074--1428380 Score: 458
Period size: 163 Copynumber: 1.9 Consensus size: 165
1428064 AGTTGATGGG
* * * *
1428074 ACCCTTTAGTCCTCAAATAGCAGGATGCCTTTTTCCTTTCGAAGCCCGCACGAGTTGGTGGCACC
1 ACCCTTTAGTCCTCAAAGAGCAAGACGCCTTTTTCCTTTCGAAGCCCACACGAGTTGGTGGCACC
* * ** *
1428139 CTTCAGTCCTCAAAAAGTAGGATGCCTTTTTCCTTTCAAAGCCCACACGAGTTAG-TGGCACCCT
66 CTTCAGTCCTCAAAAAGCAAGACACCTTTTTCATTTCAAAGCCCACACGAGTT-GCTGGCACCCT
1428203 TTAGTCCTCAAAGAGCAGCATGCCTTTTTAAGTGGC
130 TTAGTCCTCAAAGAGCAGCATGCCTTTTTAAGTGGC
1428239 ACCCTTTAGTCCTCAAAGAGCAAGACG-CTTTTTCCTTTCGAAGCCCACAC-AGTTGGTGGCACC
1 ACCCTTTAGTCCTCAAAGAGCAAGACGCCTTTTTCCTTTCGAAGCCCACACGAGTTGGTGGCACC
* * *
1428302 CTTTAGTCCTCAAAGAGCAAGACACCTTTTTCATTTCAAAGCCTACACGAGTTGCTGGCACCCTT
66 CTTCAGTCCTCAAAAAGCAAGACACCTTTTTCATTTCAAAGCCCACACGAGTTGCTGGCACCCTT
* *
1428367 TAGTCGTCGAAGAG
131 TAGTCCTCAAAGAG
1428381 TAAGACACCT
Statistics
Matches: 127, Mismatches: 14, Indels: 4
0.88 0.10 0.03
Matches are distributed among these distances:
162 1 0.01
163 80 0.63
164 22 0.17
165 24 0.19
ACGTcount: A:0.24, C:0.29, G:0.20, T:0.28
Consensus pattern (165 bp):
ACCCTTTAGTCCTCAAAGAGCAAGACGCCTTTTTCCTTTCGAAGCCCACACGAGTTGGTGGCACC
CTTCAGTCCTCAAAAAGCAAGACACCTTTTTCATTTCAAAGCCCACACGAGTTGCTGGCACCCTT
TAGTCCTCAAAGAGCAGCATGCCTTTTTAAGTGGC
Found at i:1428386 original size:62 final size:62
Alignment explanation
Indices: 1428234--1428619 Score: 470
Period size: 62 Copynumber: 6.3 Consensus size: 62
1428224 GCCTTTTTAA
* *
1428234 GTGGCACCCTTTAGTCCTCAAAGAGCAAGAC-GCTTTTTCCTTTCGAAGCCCACAC-AGTTG
1 GTGGCACCCTTTAGTCCTCAAAGAGCAAGACACCTTTTTCCTTTCAAAGCCCACACAAGTTG
* * *
1428294 GTGGCACCCTTTAGTCCTCAAAGAGCAAGACACCTTTTTCATTTCAAAGCCTACACGAGTTG
1 GTGGCACCCTTTAGTCCTCAAAGAGCAAGACACCTTTTTCCTTTCAAAGCCCACACAAGTTG
* * * * * *
1428356 CTGGCACCCTTTAGTCGTCGAAGAGTAAGACACCTTTCTCCTTTCAAAGCCCACACGAGTTG
1 GTGGCACCCTTTAGTCCTCAAAGAGCAAGACACCTTTTTCCTTTCAAAGCCCACACAAGTTG
* * * * * *
1428418 GTGGCACCCTTTAGTTCTAAAAGAGCAGGCCGCCTTTTTCTTTTCAAAGCCCACACAAGTTG
1 GTGGCACCCTTTAGTCCTCAAAGAGCAAGACACCTTTTTCCTTTCAAAGCCCACACAAGTTG
* * * ** *
1428480 GTGGCACCCTTTAGTCCTCAAAAATCAGGATGCCTTTTTCCTTTCAAAGCCCACACAAGTTT
1 GTGGCACCCTTTAGTCCTCAAAGAGCAAGACACCTTTTTCCTTTCAAAGCCCACACAAGTTG
* *** ** **
1428542 GTGGCACCCTTTAGTCCTTAAAGAGCAAGATGTCTTTTTCCTTTCAGCGCCCACACGTGTTG
1 GTGGCACCCTTTAGTCCTCAAAGAGCAAGACACCTTTTTCCTTTCAAAGCCCACACAAGTTG
*
1428604 GTGGCACCCTTCAGTC
1 GTGGCACCCTTTAGTC
1428620 TCCTTTCAAA
Statistics
Matches: 282, Mismatches: 42, Indels: 2
0.87 0.13 0.01
Matches are distributed among these distances:
60 31 0.11
61 20 0.07
62 231 0.82
ACGTcount: A:0.24, C:0.29, G:0.19, T:0.28
Consensus pattern (62 bp):
GTGGCACCCTTTAGTCCTCAAAGAGCAAGACACCTTTTTCCTTTCAAAGCCCACACAAGTTG
Found at i:1428401 original size:225 final size:227
Alignment explanation
Indices: 1428008--1428445 Score: 628
Period size: 225 Copynumber: 1.9 Consensus size: 227
1427998 CACATGTTGT
*
1428008 TGGCACCCTTTAGTCCTCAAAGAGCAAGACGTATTTTTCTTTTCAAAGCCCACAGAAGTTGATGG
1 TGGCACCCTTTAGTCCTCAAAGAGCAAGACGTATTTTTCCTTTCAAAGCCCACAGAAGTTGATGG
* * * ** * * * *
1428073 GACCCTTTAGTCCTCAAATAGCAGGATGCCTTTTTCCTTTCGAAGCCCGCACGAGTTGGTGGCAC
66 CACCCTTTAGTCCTCAAAGAGCAAGACACCTTTTTCATTTCAAAGCCCACACGAGTTGCTGGCAC
* ** *
1428138 CCTTCAGTCCTCAAAAAGTAGGATGCCTTTTTCCTTTCAAAGCCCACACGAGTTAGTGGCACCCT
131 CCTTCAGTCCTCAAAAAGTAAGACACCTTTCTCCTTTCAAAGCCCACACGAGTTAGTGGCACCCT
*
1428203 TTAGTCCTCAAAGAGCAGCATGCCTTTTTAAG
196 TTAGTCCTAAAAGAGCAGCATGCCTTTTTAAG
* * * *
1428235 TGGCACCCTTTAGTCCTCAAAGAGCAAGACG-CTTTTTCCTTTCGAAGCCCACA-CAGTTGGTGG
1 TGGCACCCTTTAGTCCTCAAAGAGCAAGACGTATTTTTCCTTTCAAAGCCCACAGAAGTTGATGG
*
1428298 CACCCTTTAGTCCTCAAAGAGCAAGACACCTTTTTCATTTCAAAGCCTACACGAGTTGCTGGCAC
66 CACCCTTTAGTCCTCAAAGAGCAAGACACCTTTTTCATTTCAAAGCCCACACGAGTTGCTGGCAC
* * * * *
1428363 CCTTTAGTCGTCGAAGAGTAAGACACCTTTCTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCT
131 CCTTCAGTCCTCAAAAAGTAAGACACCTTTCTCCTTTCAAAGCCCACACGAGTTAGTGGCACCCT
*
1428428 TTAGTTCTAAAAGAGCAG
196 TTAGTCCTAAAAGAGCAG
1428446 GCCGCCTTTT
Statistics
Matches: 185, Mismatches: 26, Indels: 2
0.87 0.12 0.01
Matches are distributed among these distances:
225 135 0.73
226 19 0.10
227 31 0.17
ACGTcount: A:0.25, C:0.28, G:0.20, T:0.28
Consensus pattern (227 bp):
TGGCACCCTTTAGTCCTCAAAGAGCAAGACGTATTTTTCCTTTCAAAGCCCACAGAAGTTGATGG
CACCCTTTAGTCCTCAAAGAGCAAGACACCTTTTTCATTTCAAAGCCCACACGAGTTGCTGGCAC
CCTTCAGTCCTCAAAAAGTAAGACACCTTTCTCCTTTCAAAGCCCACACGAGTTAGTGGCACCCT
TTAGTCCTAAAAGAGCAGCATGCCTTTTTAAG
Found at i:1428635 original size:40 final size:40
Alignment explanation
Indices: 1428580--1428659 Score: 124
Period size: 40 Copynumber: 2.0 Consensus size: 40
1428570 GATGTCTTTT
** **
1428580 TCCTTTCAGCGCCCACACGTGTTGGTGGCACCCTTCAGTC
1 TCCTTTCAAAGCCCACACAAGTTGGTGGCACCCTTCAGTC
1428620 TCCTTTCAAAGCCCACACAAGTTGGTGGCACCCTTCAGTC
1 TCCTTTCAAAGCCCACACAAGTTGGTGGCACCCTTCAGTC
1428660 CTCAAAGAGC
Statistics
Matches: 36, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
40 36 1.00
ACGTcount: A:0.17, C:0.36, G:0.20, T:0.26
Consensus pattern (40 bp):
TCCTTTCAAAGCCCACACAAGTTGGTGGCACCCTTCAGTC
Found at i:1428700 original size:102 final size:102
Alignment explanation
Indices: 1428518--1428708 Score: 292
Period size: 102 Copynumber: 1.9 Consensus size: 102
1428508 GATGCCTTTT
* * * * *
1428518 TCCTTTCAAAGCCCACACAAGTTTGTGGCACCCTTTAGTCCTTAAAGAGCAAGATGTCTTTTTCC
1 TCCTTTCAAAGCCCACACAAGTTGGTGGCACCCTTCAGTCCTCAAAGAGCAAGATGCCTTTCTCC
** * *
1428583 TTTCAGCGCCCACACGTGTTGGTGGCACCCTTCAGTC
66 TTTCAAAGCCAACACGAGTTGGTGGCACCCTTCAGTC
*
1428620 TCCTTTCAAAGCCCACACAAGTTGGTGGCACCCTTCAGTCCTCAAAGAGCAGGATGCCTTTCTCC
1 TCCTTTCAAAGCCCACACAAGTTGGTGGCACCCTTCAGTCCTCAAAGAGCAAGATGCCTTTCTCC
1428685 TTTCAAAGCCAACACGAGTTGGTG
66 TTTCAAAGCCAACACGAGTTGGTG
1428709 ACATCTTTTA
Statistics
Matches: 79, Mismatches: 10, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
102 79 1.00
ACGTcount: A:0.23, C:0.30, G:0.19, T:0.28
Consensus pattern (102 bp):
TCCTTTCAAAGCCCACACAAGTTGGTGGCACCCTTCAGTCCTCAAAGAGCAAGATGCCTTTCTCC
TTTCAAAGCCAACACGAGTTGGTGGCACCCTTCAGTC
Found at i:1428863 original size:123 final size:124
Alignment explanation
Indices: 1428623--1428960 Score: 326
Period size: 123 Copynumber: 2.7 Consensus size: 124
1428613 TTCAGTCTCC
** * ***
1428623 TTTCAAAGCCCACACAAGTTGGTGGCAC-CCTTCAGTCCTCAAAGAGCAGGATGCCTTTCTCCTT
1 TTTCAAAGCCCACACGGGTTGGTGGC-CTCATTTTTTCCTCAAAGAGCAGGATGCCTTTCTCCTT
* * *
1428687 TCAAAGCCAACACGAGTTGGTGACATCTTTTAGTCCTCAAAAAGCAGGTTGCCTTTTTCG
65 TCAAAGCCAACACGAGTTGGTGACACCCTTTAGTCCTCAAAAAGCAGGATGCCTTTTTCG
* * * *
1428747 TTTCAAA-CCTACACGGGTTGGTGGCCTCATTTTTTCCTCAAAGAGTAGGACT-CCTTTTTCTTT
1 TTTCAAAGCCCACACGGGTTGGTGGCCTCATTTTTTCCTCAAAGAGCAGGA-TGCCTTTCTCCTT
* * * * * * *
1428810 TCAAAGCCTACACGAGTTTGTGGCACCCTTTAGTTCTGAAAGAGCAGGATGCCTTTTTCT
65 TCAAAGCCAACACGAGTTGGTGACACCCTTTAGTCCTCAAAAAGCAGGATGCCTTTTTCG
* * * * ** * *
1428870 TTTCAAAGCCCACACGAGTTTGTGACAC-CCTTTAGTCTTCAAAGAGCAAGATGCCCTTT-TCCT
1 TTTCAAAGCCCACACGGGTTGGTGGC-CTCATTTTTTCCTCAAAGAGCAGGATG-CCTTTCTCCT
* * *
1428933 TTCAATGCCCACACGAGTTGGTGGCACC
64 TTCAAAGCCAACACGAGTTGGTGACACC
1428961 ATTCAGTCTC
Statistics
Matches: 174, Mismatches: 34, Indels: 12
0.79 0.15 0.05
Matches are distributed among these distances:
122 1 0.01
123 100 0.57
124 67 0.39
125 6 0.03
ACGTcount: A:0.23, C:0.27, G:0.19, T:0.31
Consensus pattern (124 bp):
TTTCAAAGCCCACACGGGTTGGTGGCCTCATTTTTTCCTCAAAGAGCAGGATGCCTTTCTCCTTT
CAAAGCCAACACGAGTTGGTGACACCCTTTAGTCCTCAAAAAGCAGGATGCCTTTTTCG
Found at i:1428969 original size:62 final size:62
Alignment explanation
Indices: 1428620--1428960 Score: 391
Period size: 62 Copynumber: 5.5 Consensus size: 62
1428610 CCCTTCAGTC
* * *
1428620 TCCTTTCAAAGCCCACACAAGTTGGTGGCACCCTTCAGTCCTCAAAGAGCAGGATGCCTTTC
1 TCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTT
* * * * * *
1428682 TCCTTTCAAAGCCAACACGAGTTGGTGACATCTTTTAGTCCTCAAAAAGCAGGTTGCCTTTT
1 TCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTT
* * * * ** *
1428744 TCGTTTCAAA-CCTACACGGGTTGGTGGC-CTCATTTTTTCCTCAAAGAGTAGGACT-CCTTTT
1 TCCTTTCAAAGCCCACACGAGTTGGTGGCAC-CCTTTAGTCCTCAAAGAGCAGGA-TGCCTTTT
* * * * *
1428805 TCTTTTCAAAGCCTACACGAGTTTGTGGCACCCTTTAGTTCTGAAAGAGCAGGATGCCTTTT
1 TCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTT
* * * * * *
1428867 TCTTTTCAAAGCCCACACGAGTTTGTGACACCCTTTAGTCTTCAAAGAGCAAGATGCCCTTT
1 TCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTT
*
1428929 TCCTTTCAATGCCCACACGAGTTGGTGGCACC
1 TCCTTTCAAAGCCCACACGAGTTGGTGGCACC
1428961 ATTCAGTCTC
Statistics
Matches: 234, Mismatches: 40, Indels: 10
0.82 0.14 0.04
Matches are distributed among these distances:
61 48 0.21
62 185 0.79
63 1 0.00
ACGTcount: A:0.23, C:0.27, G:0.19, T:0.31
Consensus pattern (62 bp):
TCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTT
Found at i:1429048 original size:102 final size:102
Alignment explanation
Indices: 1428870--1429062 Score: 278
Period size: 102 Copynumber: 1.9 Consensus size: 102
1428860 GCCTTTTTCT
* * * *
1428870 TTTCAAAGCCCACACGAGTTTGTGACACCCTTTAGTCTTCAAAGAGCAAGATGCCCTTTTCCTTT
1 TTTCAAAGCCCACACAAGTTGGTGACACCCTTTAGTCCTCAAAGAGCAAGATGCCCTTTTCATTT
* **
1428935 CAATGCCCACACGAGTTGGTGGCACCATTCAGTCTCC
66 CAAAGCCCACACGAGTTCATGGCACCATTCAGTCTCC
* * * *
1428972 TTTCAAAGCCCACACAAGTTGGTGGCACCCTTTAGTCCTCAAATAGCAGGATGCCTTTTTCATTT
1 TTTCAAAGCCCACACAAGTTGGTGACACCCTTTAGTCCTCAAAGAGCAAGATGCCCTTTTCATTT
*
1429037 CAAAGCTCACACGAGTTCATGGCACC
66 CAAAGCCCACACGAGTTCATGGCACC
1429063 CTTTAGTCCT
Statistics
Matches: 79, Mismatches: 12, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
102 79 1.00
ACGTcount: A:0.25, C:0.30, G:0.18, T:0.28
Consensus pattern (102 bp):
TTTCAAAGCCCACACAAGTTGGTGACACCCTTTAGTCCTCAAAGAGCAAGATGCCCTTTTCATTT
CAAAGCCCACACGAGTTCATGGCACCATTCAGTCTCC
Found at i:1429069 original size:62 final size:62
Alignment explanation
Indices: 1428969--1429402 Score: 475
Period size: 62 Copynumber: 7.0 Consensus size: 62
1428959 CCATTCAGTC
* * *
1428969 TCCTTTCAAAGCCCACACAAGTTGGTGGCACCCTTTAGTCCTCAAATAGCAGGATGCCTTTT
1 TCCTTTCAAAGCCCACACGAGTTGATGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTT
* * * *
1429031 TCATTTCAAAGCTCACACGAGTTCATGGCACCCTTTAGTCCTTAAA-ATGCAGGATGCCTTTT
1 TCCTTTCAAAGCCCACACGAGTTGATGGCACCCTTTAGTCCTCAAAGA-GCAGGATGCCTTTT
* * * * * * * * * **
1429093 TCGTTTAAAAACCCACATTG-GTTGGTGG-TCCATTTTGTCTTCAAAGAGCAGGACACCTTTT
1 TCCTTTCAAAGCCCACA-CGAGTTGATGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTT
* * * * * **
1429154 TCTTTTCAAAGCCCGCAC-ATGTTGTTGGCACCCTTTAGTCCTCAAAGAGCAAGACGTATTTT
1 TCCTTTCAAAGCCCACACGA-GTTGATGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTT
* * *
1429216 TCTTTTCAAAGCCCACA-GAAGTTGATGGGACCCTTTAGTCCTCAAATAGCAGGATGCCTTTT
1 TCCTTTCAAAGCCCACACG-AGTTGATGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTT
** * * * *
1429278 TCCTTTCGTAGCCCGCACGAGTTGGTGGCACCCTTCAGTCCTCAAAAAGCAGGATGCCTTTT
1 TCCTTTCAAAGCCCACACGAGTTGATGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTT
1429340 TCCTTTCAAAGCCCACACGAGTT-AGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTT
1 TCCTTTCAAAGCCCACACGAGTTGA-TGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTT
1429402 T
1 T
1429403 GAGTGGCACC
Statistics
Matches: 306, Mismatches: 56, Indels: 20
0.80 0.15 0.05
Matches are distributed among these distances:
61 45 0.15
62 258 0.84
63 3 0.01
ACGTcount: A:0.24, C:0.26, G:0.19, T:0.31
Consensus pattern (62 bp):
TCCTTTCAAAGCCCACACGAGTTGATGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTT
Found at i:1429120 original size:164 final size:164
Alignment explanation
Indices: 1428808--1429109 Score: 419
Period size: 164 Copynumber: 1.8 Consensus size: 164
1428798 TCCTTTTTCT
* * * * * *
1428808 TTTCAAAGCCTACACGAGTTTGTGGCACCCTTTAGTTCTGAAAGAGCAGGATGCCTTTTTCTTTT
1 TTTCAAAGCCCACACAAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTTTCATTT
** *
1428873 CAAAGCCCACACGAGTTTGTGACACCCTTTAGTCTTCAAAGAGCAAGATGCCCTTTTCCTTTCAA
66 CAAAGCCCACACGAGTTCATGACACCCTTTAGTCTTCAAAGAGCAAGATGCCCTTTTCCTTTAAA
**
1428938 TGCCCACACGAGTTGGTGGCACCATTCAGTCTCC
131 AACCCACACGAGTTGGTGGCACCATTCAGTCTCC
*
1428972 TTTCAAAGCCCACACAAGTTGGTGGCACCCTTTAGTCCTCAAATAGCAGGATGCCTTTTTCATTT
1 TTTCAAAGCCCACACAAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTTTCATTT
* * * * *
1429037 CAAAGCTCACACGAGTTCATGGCACCCTTTAGTCCTT-AAA-ATGCAGGATGCCTTTTTCGTTTA
66 CAAAGCCCACACGAGTTCATGACACCCTTTAGT-CTTCAAAGA-GCAAGATGCCCTTTTCCTTTA
1429100 AAAACCCACA
129 AAAACCCACA
1429110 TTGGTTGGTG
Statistics
Matches: 119, Mismatches: 17, Indels: 4
0.85 0.12 0.03
Matches are distributed among these distances:
163 1 0.01
164 115 0.97
165 3 0.03
ACGTcount: A:0.25, C:0.27, G:0.18, T:0.30
Consensus pattern (164 bp):
TTTCAAAGCCCACACAAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTTTCATTT
CAAAGCCCACACGAGTTCATGACACCCTTTAGTCTTCAAAGAGCAAGATGCCCTTTTCCTTTAAA
AACCCACACGAGTTGGTGGCACCATTCAGTCTCC
Found at i:1429408 original size:41 final size:41
Alignment explanation
Indices: 1429363--1429443 Score: 135
Period size: 41 Copynumber: 2.0 Consensus size: 41
1429353 CACACGAGTT
* *
1429363 AGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTTTG
1 AGTGGCACCCTTTAGTCCGCAAAGAGCAAGATGCCTTTTTG
*
1429404 AGTGGCACCCTTTAGTCCGGAAAGAGCAAGATGCCTTTTT
1 AGTGGCACCCTTTAGTCCGCAAAGAGCAAGATGCCTTTTT
1429444 CCTTTCAAAG
Statistics
Matches: 37, Mismatches: 3, Indels: 0
0.93 0.08 0.00
Matches are distributed among these distances:
41 37 1.00
ACGTcount: A:0.23, C:0.23, G:0.25, T:0.28
Consensus pattern (41 bp):
AGTGGCACCCTTTAGTCCGCAAAGAGCAAGATGCCTTTTTG
Found at i:1429524 original size:164 final size:164
Alignment explanation
Indices: 1429237--1429566 Score: 466
Period size: 164 Copynumber: 2.0 Consensus size: 164
1429227 CCCACAGAAG
* * * * ** *
1429237 TTGATGGGACCCTTTAGTCCTCAAATAGCAGGATGCCTTTTTCCTTTCGTAGCCCGCACGAGTTG
1 TTGATGGCACCCTTTAGTCCGCAAAGAGCAAGATGCCTTTTTCCTTTCAAAGCCCACACGAGTTG
* * **
1429302 GTGGCACCCTTCAGTCCTCAAAAAGCAGGATGCCTTTTTCCTTTCAAAGCCCACACGAGTTAG-T
66 GTGGCACCCTTCAATCCTCAAAAAGCAAGACACCTTTTTCCTTTCAAAGCCCACACGAGTT-GCT
1429366 GGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTT
130 GGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTT
*
1429401 TTGAGTGGCACCCTTTAGTCCGGAAAGAGCAAGATGCCTTTTTCCTTTCAAAGCCCACAC-AGTT
1 TTGA-TGGCACCCTTTAGTCCGCAAAGAGCAAGATGCCTTTTTCCTTTCAAAGCCCACACGAGTT
* * *
1429465 GGTGGCACCCTTTAATCCTCAAAGAGCAAGACACCTTTTTCCTTTCAAAGCCTACACGAGTTGCT
65 GGTGGCACCCTTCAATCCTCAAAAAGCAAGACACCTTTTTCCTTTCAAAGCCCACACGAGTTGCT
* * *
1429530 GGCACTCTTTAGTCCTCGAAGAGCAGGATGCTTTT
130 GGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTT
1429565 TT
1 TT
1429567 CCTTTCAAAG
Statistics
Matches: 146, Mismatches: 18, Indels: 4
0.87 0.11 0.02
Matches are distributed among these distances:
163 1 0.01
164 98 0.67
165 47 0.32
ACGTcount: A:0.23, C:0.27, G:0.21, T:0.29
Consensus pattern (164 bp):
TTGATGGCACCCTTTAGTCCGCAAAGAGCAAGATGCCTTTTTCCTTTCAAAGCCCACACGAGTTG
GTGGCACCCTTCAATCCTCAAAAAGCAAGACACCTTTTTCCTTTCAAAGCCCACACGAGTTGCTG
GCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTT
Found at i:1429566 original size:62 final size:62
Alignment explanation
Indices: 1429405--1429791 Score: 524
Period size: 62 Copynumber: 6.3 Consensus size: 62
1429395 GCCTTTTTGA
** *
1429405 GTGGCACCCTTTAGTCCGGAAAGAGCAAGATGCCTTTTTCCTTTCAAAGCCCACAC-AGTTG
1 GTGGCACCCTTTAGTCCTCAAAGAGCAAGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTG
* * *
1429466 GTGGCACCCTTTAATCCTCAAAGAGCAAGACACCTTTTTCCTTTCAAAGCCTACACGAGTTG
1 GTGGCACCCTTTAGTCCTCAAAGAGCAAGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTG
* * * * * * *
1429528 CTGGCACTCTTTAGTCCTCGAAGAGCAGGATGCTTTTTTCCTTTCAAAGCCCACAGGAGTTG
1 GTGGCACCCTTTAGTCCTCAAAGAGCAAGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTG
* * * * * * * *
1429590 GTGGCACCTTTTAGTCCTCAAAGAGTAGGACGCATTTTTCTTTTCAAAGCTCATACAAGTTG
1 GTGGCACCCTTTAGTCCTCAAAGAGCAAGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTG
* * *
1429652 GTGGCACCCTTTAGTCCTCAAAGAGCAGGACGTCTTTTTCCTTTCAAAGCCCACACGAGTTT
1 GTGGCACCCTTTAGTCCTCAAAGAGCAAGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTG
* * *
1429714 GTGGCACCCTTTAATCCTCAAAGAGCAAGATGCCTTTTTCCTTTCAACGCCCACACGAGTTG
1 GTGGCACCCTTTAGTCCTCAAAGAGCAAGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTG
1429776 GTGGCACCCTTTAGTC
1 GTGGCACCCTTTAGTC
1429792 TCCTTTCAAA
Statistics
Matches: 281, Mismatches: 44, Indels: 1
0.86 0.13 0.00
Matches are distributed among these distances:
61 50 0.18
62 231 0.82
ACGTcount: A:0.24, C:0.27, G:0.20, T:0.29
Consensus pattern (62 bp):
GTGGCACCCTTTAGTCCTCAAAGAGCAAGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTG
Found at i:1429574 original size:226 final size:227
Alignment explanation
Indices: 1429179--1429628 Score: 623
Period size: 226 Copynumber: 2.0 Consensus size: 227
1429169 CACATGTTGT
* * *
1429179 TGGCACCCTTTAGTCCTCAAAGAGCAAGACGTATTTTTCTTTTCAAAGCCCACAGAAGTTGATGG
1 TGGCACCCTTTAGTCCGCAAAGAGCAAGACGCATTTTTCCTTTCAAAGCCCACAGAAGTTGATGG
* * * * ** ** * *
1429244 GACCCTTTAGTCCTCAAATAGCAGGATGCCTTTTTCCTTTCGTAGCCCGCACGAGTTGGTGGCAC
66 CACCCTTTAATCCTCAAAGAGCAAGACACCTTTTTCCTTTCAAAGCCCACACGAGTTGCTGGCAC
1429309 CCTTCAGTCCTCAAAAAGCAGGATGCCTTTTTCCTTTCAAAGCCCACACGAGTTAGTGGCACCCT
131 CCTTCAGTCCTCAAAAAGCAGGATGCCTTTTTCCTTTCAAAGCCCACACGAGTTAGTGGCACCCT
* *
1429374 TTAGTCCTCAAAGAGCAGGATGCCTTTTTGAG
196 TTAGTCCTCAAAGAGCAGGACGCATTTTTGAG
* * * * *
1429406 TGGCACCCTTTAGTCCGGAAAGAGCAAGATGCCTTTTTCCTTTCAAAGCCCACA-CAGTTGGTGG
1 TGGCACCCTTTAGTCCGCAAAGAGCAAGACGCATTTTTCCTTTCAAAGCCCACAGAAGTTGATGG
*
1429470 CACCCTTTAATCCTCAAAGAGCAAGACACCTTTTTCCTTTCAAAGCCTACACGAGTTGCTGGCAC
66 CACCCTTTAATCCTCAAAGAGCAAGACACCTTTTTCCTTTCAAAGCCCACACGAGTTGCTGGCAC
* * * * * * * *
1429535 TCTTTAGTCCTCGAAGAGCAGGATGCTTTTTTCCTTTCAAAGCCCACAGGAGTTGGTGGCACCTT
131 CCTTCAGTCCTCAAAAAGCAGGATGCCTTTTTCCTTTCAAAGCCCACACGAGTTAGTGGCACCCT
*
1429600 TTAGTCCTCAAAGAGTAGGACGCATTTTT
196 TTAGTCCTCAAAGAGCAGGACGCATTTTT
1429629 CTTTTCAAAG
Statistics
Matches: 193, Mismatches: 30, Indels: 1
0.86 0.13 0.00
Matches are distributed among these distances:
226 145 0.75
227 48 0.25
ACGTcount: A:0.24, C:0.27, G:0.20, T:0.29
Consensus pattern (227 bp):
TGGCACCCTTTAGTCCGCAAAGAGCAAGACGCATTTTTCCTTTCAAAGCCCACAGAAGTTGATGG
CACCCTTTAATCCTCAAAGAGCAAGACACCTTTTTCCTTTCAAAGCCCACACGAGTTGCTGGCAC
CCTTCAGTCCTCAAAAAGCAGGATGCCTTTTTCCTTTCAAAGCCCACACGAGTTAGTGGCACCCT
TTAGTCCTCAAAGAGCAGGACGCATTTTTGAG
Found at i:1429798 original size:40 final size:40
Alignment explanation
Indices: 1429752--1429831 Score: 133
Period size: 40 Copynumber: 2.0 Consensus size: 40
1429742 GATGCCTTTT
** *
1429752 TCCTTTCAACGCCCACACGAGTTGGTGGCACCCTTTAGTC
1 TCCTTTCAAAACCCACACAAGTTGGTGGCACCCTTTAGTC
1429792 TCCTTTCAAAACCCACACAAGTTGGTGGCACCCTTTAGTC
1 TCCTTTCAAAACCCACACAAGTTGGTGGCACCCTTTAGTC
1429832 CTCAAAGAGC
Statistics
Matches: 37, Mismatches: 3, Indels: 0
0.93 0.08 0.00
Matches are distributed among these distances:
40 37 1.00
ACGTcount: A:0.21, C:0.34, G:0.17, T:0.28
Consensus pattern (40 bp):
TCCTTTCAAAACCCACACAAGTTGGTGGCACCCTTTAGTC
Found at i:1429868 original size:102 final size:102
Alignment explanation
Indices: 1429690--1429893 Score: 329
Period size: 102 Copynumber: 2.0 Consensus size: 102
1429680 GACGTCTTTT
* * *
1429690 TCCTTTCAAAGCCCACACGAGTTTGTGGCACCCTTTAATCCTCAAAGAGCAAGATGCCTTTTTCC
1 TCCTTTCAAAACCCACACAAGTTGGTGGCACCCTTTAATCCTCAAAGAGCAAGATGCCTTTTTCC
* *
1429755 TTTCAACGCCCACACGAGTTGGTGGCACCCTTTAGTC
66 TTTCAACGCCCACACGAGTTCGTGGCACCATTTAGTC
* *
1429792 TCCTTTCAAAACCCACACAAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTTTCC
1 TCCTTTCAAAACCCACACAAGTTGGTGGCACCCTTTAATCCTCAAAGAGCAAGATGCCTTTTTCC
1429857 TTTCTAA-GCCCACACGAGTTCGTGGCACCATTTAGTC
66 TTTC-AACGCCCACACGAGTTCGTGGCACCATTTAGTC
1429894 CTTAAAAAGA
Statistics
Matches: 94, Mismatches: 7, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
102 92 0.98
103 2 0.02
ACGTcount: A:0.23, C:0.31, G:0.18, T:0.28
Consensus pattern (102 bp):
TCCTTTCAAAACCCACACAAGTTGGTGGCACCCTTTAATCCTCAAAGAGCAAGATGCCTTTTTCC
TTTCAACGCCCACACGAGTTCGTGGCACCATTTAGTC
Found at i:1429891 original size:62 final size:62
Alignment explanation
Indices: 1429792--1430163 Score: 426
Period size: 62 Copynumber: 6.0 Consensus size: 62
1429782 CCCTTTAGTC
* *
1429792 TCCTTTCAAAACCCACACAAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTT
1 TCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTT
* * * * * * *
1429854 TCCTTTCTAAGCCCACACGAGTTCGTGGCACCATTTAGTCCTTAAAAAGAAGGATTCCTTTT
1 TCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTT
* * * * * * *
1429916 TCATTTCAAAACTCACACGAGTTGGTGG-TCCATTTTGTCCTCAAAGAGCAGGACAG-CTTTT
1 TCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGA-TGCCTTTT
* * * * * * ** * * **
1429977 TCTTTTCAAAGCCCATATGTGTAGTTGGTGCCCTTTAGTCCTCAAAGAGCAAGAAGTATTTT
1 TCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTT
* *
1430039 TCCTTTCAAAGCCCATA-GAAGTTGGTGGCACCCTTTAATCCTCAAAGAGCAGGATGCCTTTT
1 TCCTTTCAAAGCCCACACG-AGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTT
*
1430101 TCCTTTCAAAGCCCGCACGAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTT
1 TCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTT
1430163 T
1 T
1430164 GACTGGCACC
Statistics
Matches: 257, Mismatches: 48, Indels: 10
0.82 0.15 0.03
Matches are distributed among these distances:
61 48 0.19
62 208 0.81
63 1 0.00
ACGTcount: A:0.25, C:0.25, G:0.19, T:0.31
Consensus pattern (62 bp):
TCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTT
Found at i:1429916 original size:164 final size:164
Alignment explanation
Indices: 1429644--1429943 Score: 467
Period size: 164 Copynumber: 1.8 Consensus size: 164
1429634 CAAAGCTCAT
*
1429644 ACAAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGACGTCTTTTTCCTTTCAAAGCCCACACG
1 ACAAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACG
* * * * **
1429709 AGTTTGTGGCACCCTTTAATCCTCAAAGAGCAAGATGCCTTTTTCCTTTCAACGCCCACACGAGT
66 AGTTCGTGGCACCATTTAATCCTCAAAAAGCAAGATGCCTTTTTCATTTCAAAACCCACACGAGT
1429774 TGGTGGCACCCTTTAGTCTCCTTTCAAAACCCAC
131 TGGTGGCACCCTTTAGTCTCCTTTCAAAACCCAC
* *
1429808 ACAAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTTTCCTTTCTAAGCCCACACG
1 ACAAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACG
* * * *
1429873 AGTTCGTGGCACCATTTAGTCCTTAAAAAG-AAGGATTCCTTTTTCATTTCAAAACTCACACGAG
66 AGTTCGTGGCACCATTTAATCCTCAAAAAGCAA-GATGCCTTTTTCATTTCAAAACCCACACGAG
1429937 TTGGTGG
130 TTGGTGG
1429944 TCCATTTTGT
Statistics
Matches: 122, Mismatches: 13, Indels: 2
0.89 0.09 0.01
Matches are distributed among these distances:
163 2 0.02
164 120 0.98
ACGTcount: A:0.25, C:0.28, G:0.19, T:0.29
Consensus pattern (164 bp):
ACAAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACG
AGTTCGTGGCACCATTTAATCCTCAAAAAGCAAGATGCCTTTTTCATTTCAAAACCCACACGAGT
TGGTGGCACCCTTTAGTCTCCTTTCAAAACCCAC
Found at i:1430171 original size:41 final size:41
Alignment explanation
Indices: 1430126--1430204 Score: 122
Period size: 41 Copynumber: 1.9 Consensus size: 41
1430116 CACGAGTTGG
* * * *
1430126 TGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTTTGAC
1 TGGCACCCGTTAGTCATCAAAGAGCAAGACGCCTTTTTGAC
1430167 TGGCACCCGTTAGTCATCAAAGAGCAAGACGCCTTTTT
1 TGGCACCCGTTAGTCATCAAAGAGCAAGACGCCTTTTT
1430205 CCTTTCAAAG
Statistics
Matches: 34, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
41 34 1.00
ACGTcount: A:0.24, C:0.27, G:0.22, T:0.28
Consensus pattern (41 bp):
TGGCACCCGTTAGTCATCAAAGAGCAAGACGCCTTTTTGAC
Found at i:1430343 original size:40 final size:40
Alignment explanation
Indices: 1430299--1430378 Score: 133
Period size: 40 Copynumber: 2.0 Consensus size: 40
1430289 GATGCCTTTT
* *
1430299 TCCTTTCAACGCCCACACGAGTTGGTGGCACCCTTCAGTC
1 TCCTTTCAAAGCCCACACAAGTTGGTGGCACCCTTCAGTC
*
1430339 TCCTTTCAAAGCCCACACAAGTTGGTGGCACCCTTTAGTC
1 TCCTTTCAAAGCCCACACAAGTTGGTGGCACCCTTCAGTC
1430379 CTCAAAGAGA
Statistics
Matches: 37, Mismatches: 3, Indels: 0
0.93 0.08 0.00
Matches are distributed among these distances:
40 37 1.00
ACGTcount: A:0.20, C:0.35, G:0.19, T:0.26
Consensus pattern (40 bp):
TCCTTTCAAAGCCCACACAAGTTGGTGGCACCCTTCAGTC
Found at i:1430438 original size:62 final size:62
Alignment explanation
Indices: 1430339--1430772 Score: 539
Period size: 62 Copynumber: 7.0 Consensus size: 62
1430329 CCCTTCAGTC
* *
1430339 TCCTTTCAAAGCCCACACAAGTTGGTGGCACCCTTTAGTCCTCAAAGAGAAGGATGCCTTTT
1 TCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTT
* * * * * * * *
1430401 TCCTTTCTAAGCCCACACGCGTTCGTGGCTCCATTTAGTCCTTAAAAAGCAGGATTCCTTTT
1 TCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTT
* * * * * **
1430463 TCATTTCAAAACCCACACGAGTTGGTGG-TCCATTTTGTCCTCAAAGAGCAGGACACCTTTT
1 TCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTT
* * * * * * * **
1430524 TCTTTTCAAAGCCCACAGGTGTTGTTGGTACCCTTTAGTCCTCAAAGAGCAAGACGTATTTT
1 TCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTT
* * *
1430586 TCCTTTCAAAGCCCATA-GAAGTTGGTGGCACCCTTTAGTCCTAAAAGAGAAGGATGCCTTTT
1 TCCTTTCAAAGCCCACACG-AGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTT
* * *
1430648 TCCTTTCAAAGCCCGCACGAGTTGGTGGCACCCTTTAGTCCTCAAAAAGCAGGATGCCTTTC
1 TCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTT
**
1430710 TCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCATCATGCCTTTT
1 TCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTT
1430772 T
1 T
1430773 GAATGGCACC
Statistics
Matches: 315, Mismatches: 54, Indels: 6
0.84 0.14 0.02
Matches are distributed among these distances:
61 52 0.17
62 262 0.83
63 1 0.00
ACGTcount: A:0.24, C:0.27, G:0.19, T:0.30
Consensus pattern (62 bp):
TCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTT
Found at i:1430810 original size:41 final size:41
Alignment explanation
Indices: 1430735--1430813 Score: 131
Period size: 41 Copynumber: 1.9 Consensus size: 41
1430725 CACGAGTTGG
* *
1430735 TGGCACCCTTTAGTCCTCAAAGAGCATCATGCCTTTTTGAA
1 TGGCACCCTTTAGTCCTCAAAGAGCAACACGCCTTTTTGAA
*
1430776 TGGCACCCTTTAGTCCTCAAAGAGCAAGACGCCTTTTT
1 TGGCACCCTTTAGTCCTCAAAGAGCAACACGCCTTTTT
1430814 CCTTTCAAAG
Statistics
Matches: 35, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
41 35 1.00
ACGTcount: A:0.24, C:0.28, G:0.18, T:0.30
Consensus pattern (41 bp):
TGGCACCCTTTAGTCCTCAAAGAGCAACACGCCTTTTTGAA
Found at i:1430894 original size:164 final size:165
Alignment explanation
Indices: 1430611--1430922 Score: 493
Period size: 164 Copynumber: 1.9 Consensus size: 165
1430601 TAGAAGTTGG
* *
1430611 TGGCACCCTTTAGTCCTAAAAGAGAAGGATGCCTTTTTCCTTTCAAAGCCCGCACGAGTTGGTGG
1 TGGCACCCTTTAGTCCTAAAAGAGAAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGG
* ** *
1430676 CACCCTTTAGTCCTCAAAAAGCAGGATGCCTTTCTCCTTTCAAAGCCCACACGAGTTGGTGGCAC
66 CACCCTTTAGTCCTCAAAAAGCAAGACACCTTTCTCATTTCAAAGCCCACACGAGTTGGTGGCAC
1430741 CCTTTAGTCCTCAAAGAGCATCATGCCTTTTTGAA
131 CCTTTAGTCCTCAAAGAGCATCATGCCTTTTTGAA
*
1430776 TGGCACCCTTTAGTCCTCAAAGAGCAA-GACGCCTTTTTCCTTTCAAAGCCCACAC-AGTTGGTG
1 TGGCACCCTTTAGTCCTAAAAGAG-AAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTG
* * * *
1430839 GCACCCTTTAGTCCTCAAAGAGCAAGACACCTTTTTCATTTCAAAGCCTACACGAGTTGTTGGCA
65 GCACCCTTTAGTCCTCAAAAAGCAAGACACCTTTCTCATTTCAAAGCCCACACGAGTTGGTGGCA
*
1430904 CCCTTTAGTCCTCGAAGAG
130 CCCTTTAGTCCTCAAAGAG
1430923 TAGGACACCT
Statistics
Matches: 134, Mismatches: 12, Indels: 3
0.90 0.08 0.02
Matches are distributed among these distances:
164 83 0.62
165 49 0.37
166 2 0.01
ACGTcount: A:0.25, C:0.29, G:0.19, T:0.28
Consensus pattern (165 bp):
TGGCACCCTTTAGTCCTAAAAGAGAAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGG
CACCCTTTAGTCCTCAAAAAGCAAGACACCTTTCTCATTTCAAAGCCCACACGAGTTGGTGGCAC
CCTTTAGTCCTCAAAGAGCATCATGCCTTTTTGAA
Found at i:1430930 original size:62 final size:62
Alignment explanation
Indices: 1430776--1431369 Score: 735
Period size: 62 Copynumber: 9.6 Consensus size: 62
1430766 CCTTTTTGAA
*
1430776 TGGCACCCTTTAGTCCTCAAAGAGCAAGACGCCTTTTTCCTTTCAAAGCCCACAC-AGTTGG
1 TGGCACCCTTTAGTCCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTGG
* * * * *
1430837 TGGCACCCTTTAGTCCTCAAAGAGCAAGACACCTTTTTCATTTCAAAGCCTACACGAGTTGT
1 TGGCACCCTTTAGTCCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTGG
* * * * * *
1430899 TGGCACCCTTTAGTCCTCGAAGAGTAGGACACCTTTTTCCTTTCAAAGCTCACACAAGTTGC
1 TGGCACCCTTTAGTCCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTGG
* * * *
1430961 TGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTATTTCATTTCAAAGCCCACACGAGTTCG
1 TGGCACCCTTTAGTCCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTGG
* * * * * * * * *
1431023 TGGCACCCTTTAGTCCTTAAAAACCAGGATGCCTTTTTCGTTTAAAAACCCACATGGGTTGG
1 TGGCACCCTTTAGTCCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTGG
* * * * * * *
1431085 TGG-TCCATTTTGTCCTCAAAGAGCAGGACACCTTTTTCTTTTCAAAGCCCACACGTGTTGT
1 TGGCACCCTTTAGTCCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTGG
* * ** *
1431146 TGGTACCCTTTAGTCCTCAAAGAGCAAGACGTATTTTTCCTTTCAAAGCCCATA-GAAGTTGG
1 TGGCACCCTTTAGTCCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACG-AGTTGG
* * *
1431208 TGGCACCCTTTAGTCCTCAAAGAGAAGGATGCCTTTTTCCTTTCAAAGCCCGCACGAGTTGG
1 TGGCACCCTTTAGTCCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTGG
* * *
1431270 TGGCACCCTTTAGTCCTTAAAAAGCAGGATGCCTTTTTCCTTTCAAAGCCCACACGAGTTGG
1 TGGCACCCTTTAGTCCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTGG
* * * *
1431332 TGCCACCCTTTTGTCCTCAAAGAGCAGCATGCCTTTTT
1 TGGCACCCTTTAGTCCTCAAAGAGCAGGACGCCTTTTT
1431370 AAGTGGCACC
Statistics
Matches: 455, Mismatches: 74, Indels: 7
0.85 0.14 0.01
Matches are distributed among these distances:
61 100 0.22
62 354 0.78
63 1 0.00
ACGTcount: A:0.24, C:0.27, G:0.19, T:0.29
Consensus pattern (62 bp):
TGGCACCCTTTAGTCCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTGG
Found at i:1430967 original size:226 final size:227
Alignment explanation
Indices: 1430553--1430986 Score: 665
Period size: 226 Copynumber: 1.9 Consensus size: 227
1430543 TGTTGTTGGT
* *
1430553 ACCCTTTAGTCCTCAAAGAGCAAGACGTATTTTTCCTTTCAAAGCCCATAGAAGTTGGTGGCACC
1 ACCCTTTAGTCCTCAAAGAGCAAGACGCATTTTTCCTTTCAAAGCCCACAGAAGTTGGTGGCACC
** * *
1430618 CTTTAGTCCTAAAAGAGAAGGATGCCTTTTTCCTTTCAAAGCCCGCACGAGTTGGTGGCACCCTT
66 CTTTAGTCCTAAAAGAGAAGGACACCTTTTTCATTTCAAAGCCCACACGAGTTGGTGGCACCCTT
** * *
1430683 TAGTCCTCAAAAAGCAGGATGCCTTTCTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAG
131 TAGTCCTCAAAAAGCAGGACACCTTTCTCCTTTCAAAGCCCACACAAGTTGCTGGCACCCTTTAG
1430748 TCCTCAAAGAGCATCATGCCTTTTTGAATGGC
196 TCCTCAAAGAGCATCATGCCTTTTTGAATGGC
* *
1430780 ACCCTTTAGTCCTCAAAGAGCAAGACGCCTTTTTCCTTTCAAAGCCCACA-CAGTTGGTGGCACC
1 ACCCTTTAGTCCTCAAAGAGCAAGACGCATTTTTCCTTTCAAAGCCCACAGAAGTTGGTGGCACC
* * *
1430844 CTTTAGTCCTCAAAGAGCAA-GACACCTTTTTCATTTCAAAGCCTACACGAGTTGTTGGCACCCT
66 CTTTAGTCCTAAAAGAG-AAGGACACCTTTTTCATTTCAAAGCCCACACGAGTTGGTGGCACCCT
* * * * *
1430908 TTAGTCCTCGAAGAGTAGGACACCTTTTTCCTTTCAAAGCTCACACAAGTTGCTGGCACCCTTTA
130 TTAGTCCTCAAAAAGCAGGACACCTTTCTCCTTTCAAAGCCCACACAAGTTGCTGGCACCCTTTA
1430973 GTCCTCAAAGAGCA
195 GTCCTCAAAGAGCA
1430987 GGATGCCTAT
Statistics
Matches: 186, Mismatches: 20, Indels: 3
0.89 0.10 0.01
Matches are distributed among these distances:
226 137 0.74
227 49 0.26
ACGTcount: A:0.26, C:0.28, G:0.18, T:0.28
Consensus pattern (227 bp):
ACCCTTTAGTCCTCAAAGAGCAAGACGCATTTTTCCTTTCAAAGCCCACAGAAGTTGGTGGCACC
CTTTAGTCCTAAAAGAGAAGGACACCTTTTTCATTTCAAAGCCCACACGAGTTGGTGGCACCCTT
TAGTCCTCAAAAAGCAGGACACCTTTCTCCTTTCAAAGCCCACACAAGTTGCTGGCACCCTTTAG
TCCTCAAAGAGCATCATGCCTTTTTGAATGGC
Found at i:1431214 original size:247 final size:246
Alignment explanation
Indices: 1430776--1431892 Score: 1226
Period size: 247 Copynumber: 4.6 Consensus size: 246
1430766 CCTTTTTGAA
* *
1430776 TGGCACCCTTTAGTCCTCAAAGAGCAAGACGCCTTTTTCCTTTCAAAGCCCACACAGTTGGTGGC
1 TGGCACCCTTTAGTCCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACAGAGTTGGTGGC
* *
1430841 ACCCTTTAGTCCTCAAAGAGCAAGACACCTTTTTCATTTCAAAGCCTACACGAGTTGTTGGCACC
66 ACCCTTTAGTCCTCAAAGAGCAGGACACCTTTTTCATTTCAAAGCCCACACGAGTTG-TGGCACC
* * * * * *
1430906 CTTTAGTCCTCGAAGAGTAGGACACCTTTTTCCTTTCAAAGCTCACACAAGTTGCTGGCACCCTT
130 CTTTAGTCCTCAAAGAGCAAGACACCTTTTTCCTTTCAAAGCCCACAGAAGTTGGTGGCACCCTT
* *
1430971 TAGTCCTCAAAGAGCAGGATGCCTATTTCATTTCAAAGCCCACACGAGTTCG-
195 TAGTCCTCAAAGAGCAGGATACCTTTTTCATTTCAAAGCCCACACGAGTT-GT
* * * * * * * *
1431023 TGGCACCCTTTAGTCCTTAAAAACCAGGATGCCTTTTTCGTTTAAAAACCCACATGGGTTGGTGG
1 TGGCACCCTTTAGTCCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACA-GAGTTGGTGG
* * * * * *
1431088 -TCCATTTTGTCCTCAAAGAGCAGGACACCTTTTTCTTTTCAAAGCCCACACGTGTTGTTGGTAC
65 CACCCTTTAGTCCTCAAAGAGCAGGACACCTTTTTCATTTCAAAGCCCACACGAGTTG-TGGCAC
*** *
1431152 CCTTTAGTCCTCAAAGAGCAAGACGTATTTTTCCTTTCAAAGCCCATAGAAGTTGGTGGCACCCT
129 CCTTTAGTCCTCAAAGAGCAAGACACCTTTTTCCTTTCAAAGCCCACAGAAGTTGGTGGCACCCT
* * * * *
1431217 TTAGTCCTCAAAGAGAAGGATGCCTTTTTCCTTTCAAAGCCCGCACGAGTTGG
194 TTAGTCCTCAAAGAGCAGGATACCTTTTTCATTTCAAAGCCCACACGAGTTGT
* * * *
1431270 TGGCACCCTTTAGTCCTTAAAAAGCAGGATGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGC
1 TGGCACCCTTTAGTCCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACA-GAGTTGGTGG
* * **
1431335 CACCCTTTTGTCCTCAAAGAGCAGCATGCC---TT--TTT----------A--A---GTGGCACC
65 CACCCTTTAGTCCTCAAAGAGCAGGACACCTTTTTCATTTCAAAGCCCACACGAGTTGTGGCACC
* *
1431380 CTTTAGTCCTCAAAGAGCAAGACACCTTTTTCCTTTCGAAGCCCACA-CAGTTGGTGGCACCCTT
130 CTTTAGTCCTCAAAGAGCAAGACACCTTTTTCCTTTCAAAGCCCACAGAAGTTGGTGGCACCCTT
* * *
1431444 TAGTCCTCAAAGAGCAAGACACCTTTTTCATTTCAAAGCCTACACGAGTTGT
195 TAGTCCTCAAAGAGCAGGATACCTTTTTCATTTCAAAGCCCACACGAGTTGT
* * * *
1431496 TGCCACCCTTTAGTCCTCGAAGAGTAGGACACCTTTTTCCTTTCAAAGCTCACACA-AGTTGGTG
1 TGGCACCCTTTAGTCCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGC-C-CACAGAGTTGGTG
** *
1431560 GCACCCTTTAGTCCTCAAAGAGCAGGATGCCTATTTCATTTCAAAGCCCACACGAGTTCGTGGCA
64 GCACCCTTTAGTCCTCAAAGAGCAGGACACCTTTTTCATTTCAAAGCCCACACGAGTT-GTGGCA
* * * ** * * * * *
1431625 CCCTTTAGTCCTTAAA-AACTAGGATGCCTTTTTCGTTTAAAAACCCACATG-GGTTGGTGG-TC
128 CCCTTTAGTCCTCAAAGAGC-AAGACACCTTTTTCCTTTCAAAGCCCACA-GAAGTTGGTGGCAC
* * * *
1431687 CATTTTGTCCTCAAAGAGCAGGATACCTTTTTCTTTTCAAAGCCCACACGTGTTGT
191 CCTTTAGTCCTCAAAGAGCAGGATACCTTTTTCATTTCAAAGCCCACACGAGTTGT
* * ** *
1431743 TGGTACCCTTTAGTCCTCAAAGAGCAAGACGTATTTTTCCTTTCAAAGCCCATAGAAGTTGGTGG
1 TGGCACCCTTTAGTCCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACAG-AGTTGGTGG
* ** * *
1431808 CACCCTTTAATCCTCAAAGAGCAGGATGCCTTTTTCCTTTCAAAGCCCGCACGAGTTGGTGGCAC
65 CACCCTTTAGTCCTCAAAGAGCAGGACACCTTTTTCATTTCAAAGCCCACACGAGTT-GTGGCAC
1431873 CCTTTAGTCCTCAAAGAGCA
129 CCTTTAGTCCTCAAAGAGCA
1431893 GGATGCCTTT
Statistics
Matches: 734, Mismatches: 104, Indels: 64
0.81 0.12 0.07
Matches are distributed among these distances:
226 138 0.19
227 49 0.07
228 5 0.01
229 2 0.00
231 3 0.00
233 1 0.00
241 1 0.00
243 4 0.01
245 5 0.01
246 4 0.01
247 480 0.65
248 42 0.06
ACGTcount: A:0.25, C:0.27, G:0.19, T:0.29
Consensus pattern (246 bp):
TGGCACCCTTTAGTCCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACAGAGTTGGTGGC
ACCCTTTAGTCCTCAAAGAGCAGGACACCTTTTTCATTTCAAAGCCCACACGAGTTGTGGCACCC
TTTAGTCCTCAAAGAGCAAGACACCTTTTTCCTTTCAAAGCCCACAGAAGTTGGTGGCACCCTTT
AGTCCTCAAAGAGCAGGATACCTTTTTCATTTCAAAGCCCACACGAGTTGT
Found at i:1431480 original size:164 final size:165
Alignment explanation
Indices: 1431207--1431519 Score: 477
Period size: 164 Copynumber: 1.9 Consensus size: 165
1431197 ATAGAAGTTG
** *
1431207 GTGGCACCCTTTAGTCCTCAAAGAGAAGGATGCCTTTTTCCTTTCAAAGCCCGCACGAGTTGGTG
1 GTGGCACCCTTTAGTCCTCAAAGAGAAGGACACCTTTTTCCTTTCAAAGCCCACACGAGTTGGTG
* * ** *
1431272 GCACCCTTTAGTCCTTAAAAAGCAGGATGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGCCA
66 GCACCCTTTAGTCCTCAAAAAGCAAGACACCTTTTTCATTTCAAAGCCCACACGAGTTGGTGCCA
*
1431337 CCCTTTTGTCCTCAAAGAGCAGCATGCCTTTTTAA
131 CCCTTTAGTCCTCAAAGAGCAGCATGCCTTTTTAA
*
1431372 GTGGCACCCTTTAGTCCTCAAAGAGCAA-GACACCTTTTTCCTTTCGAAGCCCACAC-AGTTGGT
1 GTGGCACCCTTTAGTCCTCAAAGAG-AAGGACACCTTTTTCCTTTCAAAGCCCACACGAGTTGGT
* * *
1431435 GGCACCCTTTAGTCCTCAAAGAGCAAGACACCTTTTTCATTTCAAAGCCTACACGAGTTGTTGCC
65 GGCACCCTTTAGTCCTCAAAAAGCAAGACACCTTTTTCATTTCAAAGCCCACACGAGTTGGTGCC
*
1431500 ACCCTTTAGTCCTCGAAGAG
130 ACCCTTTAGTCCTCAAAGAG
1431520 TAGGACACCT
Statistics
Matches: 133, Mismatches: 14, Indels: 3
0.89 0.09 0.02
Matches are distributed among these distances:
164 82 0.62
165 49 0.37
166 2 0.02
ACGTcount: A:0.24, C:0.29, G:0.19, T:0.28
Consensus pattern (165 bp):
GTGGCACCCTTTAGTCCTCAAAGAGAAGGACACCTTTTTCCTTTCAAAGCCCACACGAGTTGGTG
GCACCCTTTAGTCCTCAAAAAGCAAGACACCTTTTTCATTTCAAAGCCCACACGAGTTGGTGCCA
CCCTTTAGTCCTCAAAGAGCAGCATGCCTTTTTAA
Found at i:1431527 original size:62 final size:62
Alignment explanation
Indices: 1431372--1431904 Score: 642
Period size: 62 Copynumber: 8.6 Consensus size: 62
1431362 GCCTTTTTAA
* ** *
1431372 GTGGCACCCTTTAGTCCTCAAAGAGCAAGACACCTTTTTCCTTTCGAAGCCCACAC-AGTTG
1 GTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTTTCCTTTCAAAGCCCACACGAGTTG
* ** * *
1431433 GTGGCACCCTTTAGTCCTCAAAGAGCAAGACACCTTTTTCATTTCAAAGCCTACACGAGTTG
1 GTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTTTCCTTTCAAAGCCCACACGAGTTG
* * * * ** * *
1431495 TTGCCACCCTTTAGTCCTCGAAGAGTAGGACACCTTTTTCCTTTCAAAGCTCACACAAGTTG
1 GTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTTTCCTTTCAAAGCCCACACGAGTTG
* * *
1431557 GTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTATTTCATTTCAAAGCCCACACGAGTTC
1 GTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTTTCCTTTCAAAGCCCACACGAGTTG
* * * * * * *
1431619 GTGGCACCCTTTAGTCCTTAAA-AACTAGGATGCCTTTTTCGTTTAAAAACCCACATGGGTTG
1 GTGGCACCCTTTAGTCCTCAAAGAGC-AGGATGCCTTTTTCCTTTCAAAGCCCACACGAGTTG
* * * * * *
1431681 GTGG-TCCATTTTGTCCTCAAAGAGCAGGATACCTTTTTCTTTTCAAAGCCCACACGTGTTG
1 GTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTTTCCTTTCAAAGCCCACACGAGTTG
* * * * ** *
1431742 TTGGTACCCTTTAGTCCTCAAAGAGCAAGACGTATTTTTCCTTTCAAAGCCCATA-GAAGTTG
1 GTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTTTCCTTTCAAAGCCCACACG-AGTTG
* *
1431804 GTGGCACCCTTTAATCCTCAAAGAGCAGGATGCCTTTTTCCTTTCAAAGCCCGCACGAGTTG
1 GTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTTTCCTTTCAAAGCCCACACGAGTTG
1431866 GTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTTT
1 GTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTTT
1431905 GACTGGCACC
Statistics
Matches: 401, Mismatches: 65, Indels: 11
0.84 0.14 0.02
Matches are distributed among these distances:
61 102 0.25
62 298 0.74
63 1 0.00
ACGTcount: A:0.25, C:0.27, G:0.19, T:0.30
Consensus pattern (62 bp):
GTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTTTCCTTTCAAAGCCCACACGAGTTG
Found at i:1431558 original size:226 final size:227
Alignment explanation
Indices: 1431150--1431591 Score: 645
Period size: 226 Copynumber: 2.0 Consensus size: 227
1431140 TGTTGTTGGT
** *
1431150 ACCCTTTAGTCCTCAAAGAGCAAGACGTATTTTTCCTTTCAAAGCCCATAGAAGTTGGTGGCACC
1 ACCCTTTAGTCCTCAAAGAGCAAGACACATTTTTCCTTTCAAAGCCCACAGAAGTTGGTGGCACC
** * * *
1431215 CTTTAGTCCTCAAAGAGAAGGATGCCTTTTTCCTTTCAAAGCCCGCACGAGTTGGTGGCACCCTT
66 CTTTAGTCCTCAAAGAGAAGGACACCTTTTTCATTTCAAAGCCCACACGAGTTGGTGCCACCCTT
* ** * *
1431280 TAGTCCTTAAAAAGCAGGATGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGCCACCCTTTTG
131 TAGTCCTCAAAAAGCAGGACACCTTTTTCCTTTCAAAGCCCACACAAGTTGGTGCCACCCTTTAG
1431345 TCCTCAAAGAGCAGCATGCCTTTTTAAGTGGC
196 TCCTCAAAGAGCAGCATGCCTTTTTAAGTGGC
* * *
1431377 ACCCTTTAGTCCTCAAAGAGCAAGACACCTTTTTCCTTTCGAAGCCCACA-CAGTTGGTGGCACC
1 ACCCTTTAGTCCTCAAAGAGCAAGACACATTTTTCCTTTCAAAGCCCACAGAAGTTGGTGGCACC
* *
1431441 CTTTAGTCCTCAAAGAGCAA-GACACCTTTTTCATTTCAAAGCCTACACGAGTTGTTGCCACCCT
66 CTTTAGTCCTCAAAGAG-AAGGACACCTTTTTCATTTCAAAGCCCACACGAGTTGGTGCCACCCT
* * * * *
1431505 TTAGTCCTCGAAGAGTAGGACACCTTTTTCCTTTCAAAGCTCACACAAGTTGGTGGCACCCTTTA
130 TTAGTCCTCAAAAAGCAGGACACCTTTTTCCTTTCAAAGCCCACACAAGTTGGTGCCACCCTTTA
*
1431570 GTCCTCAAAGAGCAGGATGCCT
195 GTCCTCAAAGAGCAGCATGCCT
1431592 ATTTCATTTC
Statistics
Matches: 190, Mismatches: 24, Indels: 3
0.88 0.11 0.01
Matches are distributed among these distances:
226 143 0.75
227 47 0.25
ACGTcount: A:0.25, C:0.28, G:0.19, T:0.28
Consensus pattern (227 bp):
ACCCTTTAGTCCTCAAAGAGCAAGACACATTTTTCCTTTCAAAGCCCACAGAAGTTGGTGGCACC
CTTTAGTCCTCAAAGAGAAGGACACCTTTTTCATTTCAAAGCCCACACGAGTTGGTGCCACCCTT
TAGTCCTCAAAAAGCAGGACACCTTTTTCCTTTCAAAGCCCACACAAGTTGGTGCCACCCTTTAG
TCCTCAAAGAGCAGCATGCCTTTTTAAGTGGC
Found at i:1431912 original size:41 final size:41
Alignment explanation
Indices: 1431867--1431945 Score: 122
Period size: 41 Copynumber: 1.9 Consensus size: 41
1431857 CACGAGTTGG
* * * *
1431867 TGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTTTGAC
1 TGGCACCCGTTAGTCATCAAAGAGCAAGACGCCTTTTTGAC
1431908 TGGCACCCGTTAGTCATCAAAGAGCAAGACGCCTTTTT
1 TGGCACCCGTTAGTCATCAAAGAGCAAGACGCCTTTTT
1431946 CCTTTCAAAG
Statistics
Matches: 34, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
41 34 1.00
ACGTcount: A:0.24, C:0.27, G:0.22, T:0.28
Consensus pattern (41 bp):
TGGCACCCGTTAGTCATCAAAGAGCAAGACGCCTTTTTGAC
Found at i:1432084 original size:40 final size:40
Alignment explanation
Indices: 1432040--1432119 Score: 124
Period size: 40 Copynumber: 2.0 Consensus size: 40
1432030 GATGCCTTTT
* * *
1432040 TCCTTTCAACGCCCACACGAGTTGGTGGCACCCTTCAGTC
1 TCCTTTCAAAGCCCACACAAATTGGTGGCACCCTTCAGTC
*
1432080 TCCTTTCAAAGCCCACACAAATTGGTGGCACCCTTTAGTC
1 TCCTTTCAAAGCCCACACAAATTGGTGGCACCCTTCAGTC
1432120 CTCAAAGAGC
Statistics
Matches: 36, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
40 36 1.00
ACGTcount: A:0.21, C:0.35, G:0.17, T:0.26
Consensus pattern (40 bp):
TCCTTTCAAAGCCCACACAAATTGGTGGCACCCTTCAGTC
Found at i:1432180 original size:62 final size:62
Alignment explanation
Indices: 1432083--1432288 Score: 279
Period size: 62 Copynumber: 3.3 Consensus size: 62
1432073 TTCAGTCTCC
* * *
1432083 TTTCAAAGCCCACACAAATTGGTGGCACCCTTTAGTCCTCAAAGAGCAAGACACCTTTTTCA
1 TTTCAAAGCCTACACGAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAAGACACCTTTTTCA
* * * * *
1432145 TTTCAAAGCCTACAGGAGTTGTTGGCACCCTTTAGTCCTCGAAGAGTAAGACACCTTTTTCC
1 TTTCAAAGCCTACACGAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAAGACACCTTTTTCA
* * **
1432207 TTTCAAAG-CTCACACAAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTTTCA
1 TTTCAAAGCCT-ACACGAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAAGACACCTTTTTCA
*
1432269 TTTCAAAGCCCACACGAGTT
1 TTTCAAAGCCTACACGAGTT
1432289 TGTCGTAACG
Statistics
Matches: 123, Mismatches: 19, Indels: 4
0.84 0.13 0.03
Matches are distributed among these distances:
61 2 0.02
62 120 0.98
63 1 0.01
ACGTcount: A:0.27, C:0.27, G:0.17, T:0.28
Consensus pattern (62 bp):
TTTCAAAGCCTACACGAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAAGACACCTTTTTCA
Found at i:1435437 original size:52 final size:52
Alignment explanation
Indices: 1435367--1435487 Score: 224
Period size: 52 Copynumber: 2.3 Consensus size: 52
1435357 GAAAATTTAT
*
1435367 CTGCATGTATCGATACATTTAATAGTGTATCGATACATCTGGGCAAATTTGC
1 CTGCATGTATCGATACATTTAATAATGTATCGATACATCTGGGCAAATTTGC
*
1435419 CTGCATGTATCGATACATTTTATAATGTATCGATACATCTGGGCAAATTTGC
1 CTGCATGTATCGATACATTTAATAATGTATCGATACATCTGGGCAAATTTGC
1435471 CTGCATGTATCGATACA
1 CTGCATGTATCGATACA
1435488 AAGATCAGTG
Statistics
Matches: 67, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
52 67 1.00
ACGTcount: A:0.29, C:0.18, G:0.18, T:0.35
Consensus pattern (52 bp):
CTGCATGTATCGATACATTTAATAATGTATCGATACATCTGGGCAAATTTGC
Found at i:1435500 original size:52 final size:51
Alignment explanation
Indices: 1435367--1435507 Score: 212
Period size: 52 Copynumber: 2.7 Consensus size: 51
1435357 GAAAATTTAT
1435367 CTGCATGTATCGATACATTTAATAGTGTATCGATACATCTGGGCAAATTTGC
1 CTGCATGTATCGATACA-TTAATAGTGTATCGATACATCTGGGCAAATTTGC
* *
1435419 CTGCATGTATCGATACATTTTATAATGTATCGATACATCTGGGCAAATTTGC
1 CTGCATGTATCGATACA-TTAATAGTGTATCGATACATCTGGGCAAATTTGC
*
1435471 CTGCATGTATCGATACA-AAGATCAGTGTATCGATACA
1 CTGCATGTATCGATACATTA-AT-AGTGTATCGATACA
1435508 ATGTATCGAT
Statistics
Matches: 82, Mismatches: 5, Indels: 4
0.90 0.05 0.04
Matches are distributed among these distances:
51 2 0.02
52 80 0.98
ACGTcount: A:0.30, C:0.18, G:0.18, T:0.33
Consensus pattern (51 bp):
CTGCATGTATCGATACATTAATAGTGTATCGATACATCTGGGCAAATTTGC
Found at i:1435514 original size:13 final size:13
Alignment explanation
Indices: 1435496--1435520 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
1435486 CAAAGATCAG
1435496 TGTATCGATACAA
1 TGTATCGATACAA
1435509 TGTATCGATACA
1 TGTATCGATACA
1435521 TGTGAGTAAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:1435603 original size:33 final size:33
Alignment explanation
Indices: 1435561--1435630 Score: 104
Period size: 33 Copynumber: 2.1 Consensus size: 33
1435551 GGCAGTAGCT
1435561 TACATTGTATCGATACAAAAAAATATGTATCGA
1 TACATTGTATCGATACAAAAAAATATGTATCGA
* ***
1435594 TACATTGTATCGATACAACATTTTATGTATCGA
1 TACATTGTATCGATACAAAAAAATATGTATCGA
1435627 TACA
1 TACA
1435631 AATCGTTGAA
Statistics
Matches: 33, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
33 33 1.00
ACGTcount: A:0.40, C:0.14, G:0.11, T:0.34
Consensus pattern (33 bp):
TACATTGTATCGATACAAAAAAATATGTATCGA
Found at i:1435604 original size:13 final size:13
Alignment explanation
Indices: 1435586--1435610 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
1435576 CAAAAAAATA
1435586 TGTATCGATACAT
1 TGTATCGATACAT
1435599 TGTATCGATACA
1 TGTATCGATACA
1435611 ACATTTTATG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:1436512 original size:67 final size:68
Alignment explanation
Indices: 1436388--1436514 Score: 175
Period size: 67 Copynumber: 1.9 Consensus size: 68
1436378 ATTGGGTTTT
* * *
1436388 AAAGATGATGAAGGTGCCAATATGCTGATTCAAGGCCAGCAATATTGGACTTAAAGATGAAGATG
1 AAAGATGATAAAGATGCCAATATGCTGATTCAAGGCCAACAATATTGGACTTAAAGATGAAGATG
1436453 AGA
66 AGA
* * * * *
1436456 AAAG-TGATAAAGATGCCAATATGTTGATTCATGGCCAACGATATTGGGCTTGAAGATGA
1 AAAGATGATAAAGATGCCAATATGCTGATTCAAGGCCAACAATATTGGACTTAAAGATGA
1436515 TGAAAAAGGA
Statistics
Matches: 51, Mismatches: 8, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
67 47 0.92
68 4 0.08
ACGTcount: A:0.38, C:0.12, G:0.26, T:0.24
Consensus pattern (68 bp):
AAAGATGATAAAGATGCCAATATGCTGATTCAAGGCCAACAATATTGGACTTAAAGATGAAGATG
AGA
Found at i:1436668 original size:49 final size:49
Alignment explanation
Indices: 1436528--1437329 Score: 904
Period size: 49 Copynumber: 16.7 Consensus size: 49
1436518 AAAAGGATGT
* *
1436528 CAATGTGCTGATTCAAGGCCAGCTACATTGAACTTAAAGATGGAAAATGTGC
1 CAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGAT-G--AAGGTGC
* * *
1436580 CGATATGCTGATTCAAGGCCAAGCTATATTGGACTTAAAGATGAAGGTGC
1 CAATGTGCTGATTCAAGGCC-AGCTACATTGGACTTAAAGATGAAGGTGC
* * *
1436630 CAATGTGCTGAGTCAAGGCTAGCTACATTGGACTTAAAGATAAAGGTGC
1 CAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGC
* * * *
1436679 CAATATGCTG-----AGGCCAGCTATA-T-GAGCTTAATGGTGCAA-GTGC
1 CAATGTGCTGATTCAAGGCCAGCTACATTGGA-CTTAAAGATG-AAGGTGC
* *
1436722 CAATGTGCTGAGTCAAGGCCAGCTACATTGGACTTAAAGATAAAGGTGC
1 CAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGC
* * * * *
1436771 CAATATGCTGATTCAAGGCCAGCTATA-TGGGCTTAATGGTGCAA-GTGC
1 CAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATG-AAGGTGC
* * *
1436819 CAATGTGCTGAGTCAAGGCCAGCTACATTGGACTTAAAGATAAAGGAGC
1 CAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGC
* * * *
1436868 CAATATGCTGATTCAAGGCCAGCTATATTGGACTTAATGGTGAAGGTGC
1 CAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGC
* * *
1436917 CAATGTGCTGAGTCAAGGCCAGCTACATTGGACTTAAAGATGATGATGC
1 CAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGC
* * *
1436966 CAATATGCTGATTCAAGGCCAGCGATATTGGACTT----A--AAGGTGC
1 CAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGC
**
1437009 CAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGACGC
1 CAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGC
* * *
1437058 CAATATGCTGATTCAAGGCCAGCGATATTGGACTT----A--AAGGTGC
1 CAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGC
1437101 CAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGC
1 CAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGC
*
1437150 CAATGTGCTGAGTCAAGGCCAGCTACATTGGACTTAAAGATGGAAAAGGTGC
1 CAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGAT-G--AAGGTGC
* * *
1437202 CAATATGCTGATTCAAGGCCAGCGATATTGGACTT----A--AAGGTGC
1 CAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGC
* *
1437245 CAATGTGCTGAGTCAAGGCCAGCTACATTGGACTTAAAGATGAAGATGC
1 CAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGC
* * *
1437294 CAATATGCTGATTCAAGGCCAGCTATATTGGGCTTA
1 CAATGTGCTGATTCAAGGCCAGCTACATTGGACTTA
1437330 GAAGGGTTGT
Statistics
Matches: 631, Mismatches: 84, Indels: 73
0.80 0.11 0.09
Matches are distributed among these distances:
42 2 0.00
43 133 0.21
44 12 0.02
45 2 0.00
47 3 0.00
48 54 0.09
49 324 0.51
50 25 0.04
52 57 0.09
53 19 0.03
ACGTcount: A:0.31, C:0.18, G:0.26, T:0.25
Consensus pattern (49 bp):
CAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGC
Found at i:1436770 original size:92 final size:93
Alignment explanation
Indices: 1436528--1437329 Score: 744
Period size: 92 Copynumber: 8.4 Consensus size: 93
1436518 AAAAGGATGT
* * * *
1436528 CAATGTGCTGATTCAAGGCCAGCTACATTGAACTTAAAGATGGAAAATGTGCCGATATGCTGATT
1 CAATGTGCTGAGTCAAGGCCAGCTACATTGGACTTAAAGAT---AAAGGTGCCAATATGCTG---
* *
1436593 CAAGGCCAAGCTATATTGGACTTAAAGATGAAGGTGC
60 -AAGGCC-AGCTATATTGGACTTAATGGTGAA-GTGC
*
1436630 CAATGTGCTGAGTCAAGGCTAGCTACATTGGACTTAAAGATAAAGGTGCCAATATGCTG-AGGCC
1 CAATGTGCTGAGTCAAGGCCAGCTACATTGGACTTAAAGATAAAGGTGCCAATATGCTGAAGGCC
1436694 AGCTATA-T-GAGCTTAATGGTGCAAGTGC
66 AGCTATATTGGA-CTTAATGGTG-AAGTGC
1436722 CAATGTGCTGAGTCAAGGCCAGCTACATTGGACTTAAAGATAAAGGTGCCAATATGCTGATTCAA
1 CAATGTGCTGAGTCAAGGCCAGCTACATTGGACTTAAAGATAAAGGTGCCAATATGCTG----AA
*
1436787 GGCCAGCTATA-TGGGCTTAATGGTGCAAGTGC
62 GGCCAGCTATATTGGACTTAATGGTG-AAGTGC
*
1436819 CAATGTGCTGAGTCAAGGCCAGCTACATTGGACTTAAAGATAAAGGAGCCAATATGCTGATTCAA
1 CAATGTGCTGAGTCAAGGCCAGCTACATTGGACTTAAAGATAAAGGTGCCAATATGCTG----AA
1436884 GGCCAGCTATATTGGACTTAATGGTGAAGGTGC
62 GGCCAGCTATATTGGACTTAATGGTGAA-GTGC
* * *
1436917 CAATGTGCTGAGTCAAGGCCAGCTACATTGGACTTAAAGATGATGATGCCAATATGCTGATTCAA
1 CAATGTGCTGAGTCAAGGCCAGCTACATTGGACTTAAAGATAAAGGTGCCAATATGCTG----AA
* *
1436982 GGCCAGCGATATTGGACTTAA-----AGGTGC
62 GGCCAGCTATATTGGACTTAATGGTGAAGTGC
* * **
1437009 CAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGACGCCAATATGCTGATTCAA
1 CAATGTGCTGAGTCAAGGCCAGCTACATTGGACTTAAAGATAAAGGTGCCAATATGCTG----AA
* *
1437074 GGCCAGCGATATTGGACTTAA-----AGGTGC
62 GGCCAGCTATATTGGACTTAATGGTGAAGTGC
* * *
1437101 CAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGCCAATGTGCTGAGTCAA
1 CAATGTGCTGAGTCAAGGCCAGCTACATTGGACTTAAAGATAAAGGTGCCAATATGCT--G--AA
* **
1437166 GGCCAGCTACATTGGACTTAAAGATGGAAAAGGTGC
62 GGCCAGCTATATTGGACTT--A-ATGGTGAA-GTGC
* * * * *
1437202 CAATATGCTGATTCAAGGCCAGCGATATTGGAC-T-----TAAAGGTGCCAATGTGCTGAGTCAA
1 CAATGTGCTGAGTCAAGGCCAGCTACATTGGACTTAAAGATAAAGGTGCCAATATGCT--G--AA
* * *
1437261 GGCCAGCTACATTGGACTTAAAGATGAAGATGC
62 GGCCAGCTATATTGGACTTAATGGTGAAG-TGC
* * * *
1437294 CAATATGCTGATTCAAGGCCAGCTATATTGGGCTTA
1 CAATGTGCTGAGTCAAGGCCAGCTACATTGGACTTA
1437330 GAAGGGTTGT
Statistics
Matches: 640, Mismatches: 36, Indels: 56
0.87 0.05 0.08
Matches are distributed among these distances:
91 3 0.00
92 278 0.43
93 12 0.02
94 7 0.01
95 44 0.07
97 107 0.17
98 99 0.15
99 16 0.03
100 2 0.00
101 34 0.05
102 38 0.06
ACGTcount: A:0.31, C:0.18, G:0.26, T:0.25
Consensus pattern (93 bp):
CAATGTGCTGAGTCAAGGCCAGCTACATTGGACTTAAAGATAAAGGTGCCAATATGCTGAAGGCC
AGCTATATTGGACTTAATGGTGAAGTGC
Found at i:1437044 original size:141 final size:139
Alignment explanation
Indices: 1436576--1437329 Score: 748
Period size: 141 Copynumber: 5.3 Consensus size: 139
1436566 GATGGAAAAT
* * *
1436576 GTGCCGATATGCTGATTCAAGGCCAAGCTATATTGGACTTAAAGATGAAGGTGCCAATGTGCTGA
1 GTGCCAATATGCTGATTCAAGGCC-AGCTACATTGGACTTAAAGATGAAGGTGCCAATATGCTGA
* * * * * *
1436641 GTCAAGGCTAGCTACATTGGACTTAAAGATAAAGGTGCCAATATGCT--G---AGGCCAGCTATA
65 TTCAAGGCCAGCTATATTGGACTTAAAGAT-GA-GTGCCAATGTGCTGAGTCAAGGCCAGCTACA
*
1436701 -T-GAGCTTAATGGTGCAA
128 TTGGA-CTTAA------AG
* * *
1436718 GTGCCAATGTGCTGAGTCAAGGCCAGCTACATTGGACTTAAAGATAAAGGTGCCAATATGCTGAT
1 GTGCCAATATGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGCCAATATGCTGAT
* * *
1436783 TCAAGGCCAGCTATA-TGGGCTTAATGGTGCAAGTGCCAATGTGCTGAGTCAAGGCCAGCTACAT
66 TCAAGGCCAGCTATATTGGACTTAAAGATG--AGTGCCAATGTGCTGAGTCAAGGCCAGCTACAT
1436847 TGGACTTAAAGATAAAG
129 TGGAC-T-----TAAAG
* * * * * *
1436864 GAGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAATGGTGAAGGTGCCAATGTGCTGAG
1 GTGCCAATATGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGCCAATATGCTGAT
* * * * *
1436929 TCAAGGCCAGCTACATTGGACTTAAAGATGATGATGCCAATATGCTGATTCAAGGCCAGCGATAT
66 TCAAGGCCAGCTATATTGGACTTAAAGATGA-G-TGCCAATGTGCTGAGTCAAGGCCAGCTACAT
1436994 TGGACTTAAAG
129 TGGACTTAAAG
* **
1437005 GTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGACGCCAATATGCTGAT
1 GTGCCAATATGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGCCAATATGCTGAT
* *
1437070 TCAAGGCCAGCGATATTGGACTT-AA-A-G-GTGCCAATGTGCTGATTCAAGGCCAGCTACATTG
66 TCAAGGCCAGCTATATTGGACTTAAAGATGAGTGCCAATGTGCTGAGTCAAGGCCAGCTACATTG
1437131 GACTTAAAGATGAAG
131 GACTT----A--AAG
* *
1437146 GTGCCAATGTGCTGAGTCAAGGCCAGCTACATTGGACTTAAAGATGGAAAAGGTGCCAATATGCT
1 GTGCCAATATGCTGATTCAAGGCCAGCTACATTGGACTTAAAGAT-G--AAGGTGCCAATATGCT
*
1437211 GATTCAAGGCCAGCGATATTGGACTT-AA-A-G-GTGCCAATGTGCTGAGTCAAGGCCAGCTACA
63 GATTCAAGGCCAGCTATATTGGACTTAAAGATGAGTGCCAATGTGCTGAGTCAAGGCCAGCTACA
1437272 TTGGACTTAAAGATG
128 TTGGACTT-AA-A-G
* *
1437287 AAGATGCCAATATGCTGATTCAAGGCCAGCTATATTGGGCTTA
1 --G-TGCCAATATGCTGATTCAAGGCCAGCTACATTGGACTTA
1437330 GAAGGGTTGT
Statistics
Matches: 524, Mismatches: 56, Indels: 62
0.82 0.09 0.10
Matches are distributed among these distances:
135 35 0.07
136 1 0.00
138 1 0.00
139 3 0.01
140 25 0.05
141 182 0.35
142 23 0.04
143 1 0.00
144 117 0.22
145 12 0.02
146 75 0.14
147 46 0.09
152 3 0.01
ACGTcount: A:0.31, C:0.18, G:0.26, T:0.25
Consensus pattern (139 bp):
GTGCCAATATGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGCCAATATGCTGAT
TCAAGGCCAGCTATATTGGACTTAAAGATGAGTGCCAATGTGCTGAGTCAAGGCCAGCTACATTG
GACTTAAAG
Found at i:1437412 original size:34 final size:33
Alignment explanation
Indices: 1437329--1437435 Score: 164
Period size: 33 Copynumber: 3.2 Consensus size: 33
1437319 TATTGGGCTT
* *
1437329 AGAAGGGTTGTCACCGACTTGTGTGGGCTTTGG
1 AGAAGGGTTGCCACCGACTTGTGTGGGCTTTAG
1437362 AAGAA-GGTTGCCACCGACTTGTGTGGGCTTTAG
1 -AGAAGGGTTGCCACCGACTTGTGTGGGCTTTAG
1437395 AGAAGGGTTTGCCACCGACTTGTGTGGGCTTTAG
1 AGAAGGG-TTGCCACCGACTTGTGTGGGCTTTAG
1437429 A-AAGGGT
1 AGAAGGGT
1437436 GAAAGATGCC
Statistics
Matches: 69, Mismatches: 2, Indels: 6
0.90 0.03 0.08
Matches are distributed among these distances:
32 5 0.07
33 33 0.48
34 31 0.45
ACGTcount: A:0.20, C:0.16, G:0.36, T:0.28
Consensus pattern (33 bp):
AGAAGGGTTGCCACCGACTTGTGTGGGCTTTAG
Found at i:1437548 original size:34 final size:34
Alignment explanation
Indices: 1437437--1438003 Score: 573
Period size: 33 Copynumber: 16.8 Consensus size: 34
1437427 AGAAAGGGTG
* * *
1437437 AAAGA-TGCCACGAAGTTGTGGACTTAAAAAGAA
1 AAAGAGTGCCACGGAGTTGTGGGCTTAAAAGGAA
* *
1437470 CAAG-GTGCCACAGAGTTGTGGGCTTTAAAAAGGAAAAA
1 AAAGAGTGCCACGGAGTTGTGGGC-TT-AAAAGG---AA
*
1437508 AAAGAGTGCCACGGAGTTGTGGGCTTAGAAGGAA
1 AAAGAGTGCCACGGAGTTGTGGGCTTAAAAGGAA
*
1437542 AAAGAGTGCCACGGAGTTGTGGGCTTAGAAGG-A
1 AAAGAGTGCCACGGAGTTGTGGGCTTAAAAGGAA
* *
1437575 AAAGAGTGCCACGTAGTTGTGGGCTTTAAAGG-A
1 AAAGAGTGCCACGGAGTTGTGGGCTTAAAAGGAA
* *
1437608 AAAGAGTGCCACGGAGTCGTGGACTTAAAAGG-A
1 AAAGAGTGCCACGGAGTTGTGGGCTTAAAAGGAA
* *
1437641 AAAGAGTGCCACGGAGTCGTGGACTTAAAA-G--
1 AAAGAGTGCCACGGAGTTGTGGGCTTAAAAGGAA
*
1437672 ---G-GTGCCACGGAGTTGTGGGCTTAGAAGG-A
1 AAAGAGTGCCACGGAGTTGTGGGCTTAAAAGGAA
1437701 AAAGAAGGTGCCACGGAGTTGTGGGCTTTAAAAAGGGAA
1 AAAG-A-GTGCCACGGAGTTGTGGGC-TT-AAAA-GGAA
*
1437740 AAAGAGTGCCACGGAGTTGTGGGCTTTAAAAAGAA
1 AAAGAGTGCCACGGAGTTGTGGGC-TTAAAAGGAA
1437775 AAAG-GTGCCACGGAGTTGTGGGCTTTGAAAAGGGAA
1 AAAGAGTGCCACGGAGTTGTGGGC-TT-AAAA-GGAA
* *
1437811 AAAGAGTGCCACAGAGTTGTGGGCTTTAAAAAGAA
1 AAAGAGTGCCACGGAGTTGTGGGC-TTAAAAGGAA
* * *
1437846 AAAGTGTGCCACAGAGTTGTGGGCTTTAAAGG-A
1 AAAGAGTGCCACGGAGTTGTGGGCTTAAAAGGAA
* * *
1437879 AAAG-GTGCCACGGAGGTGTGGACTTAAAGATGAA
1 AAAGAGTGCCACGGAGTTGTGGGCTTAAA-AGGAA
*
1437913 AAA-AGTGCCACGGAATTGTGGGCTTTGAAAA-GAA
1 AAAGAGTGCCACGGAGTTGTGGGC-TT-AAAAGGAA
* *
1437947 GAAG-GTGCCACGGAGTTGTGGGCTTTAAAGG-A
1 AAAGAGTGCCACGGAGTTGTGGGCTTAAAAGGAA
* *
1437979 AAAG-GTGCCACGAAGCTGTGGGCTT
1 AAAGAGTGCCACGGAGTTGTGGGCTT
1438004 TGAAGAAAAA
Statistics
Matches: 465, Mismatches: 40, Indels: 59
0.82 0.07 0.10
Matches are distributed among these distances:
27 22 0.05
28 2 0.00
32 48 0.10
33 118 0.25
34 107 0.23
35 64 0.14
36 20 0.04
37 51 0.11
38 10 0.02
39 23 0.05
ACGTcount: A:0.34, C:0.13, G:0.34, T:0.19
Consensus pattern (34 bp):
AAAGAGTGCCACGGAGTTGTGGGCTTAAAAGGAA
Found at i:1437561 original size:106 final size:102
Alignment explanation
Indices: 1437437--1438004 Score: 621
Period size: 106 Copynumber: 5.6 Consensus size: 102
1437427 AGAAAGGGTG
* * *
1437437 AAAGA-TGCCACGAAGTTGTGGACTTAAAAAGAACAAGGTGCCACAGAGTTGTGGGCTTTAAAAA
1 AAAGAGTGCCACGGAGTTGTGGGCTTAAAAAGAA-AAGGTGCCACGGAGTTGTGGGCTTT-AAAA
*
1437501 GGAAAAAAAAGAGTGCCACGGAGTTGTGGGCTTAGAAGGAA
64 GG--AAAAAAGAGTGCCACGGAGTTGTGGGCTTAAAAGGAA
* * *
1437542 AAAGAGTGCCACGGAGTTGTGGGCTTAGAAGGAAAAGAGTGCCACGTAGTTGTGGGCTTT-AAAG
1 AAAGAGTGCCACGGAGTTGTGGGCTTAAAAAGAAAAG-GTGCCACGGAGTTGTGGGCTTTAAAAG
* *
1437606 G--AAAAGAGTGCCACGGAGTCGTGGACTTAAAAGG-A
65 GAAAAAAGAGTGCCACGGAGTTGTGGGCTTAAAAGGAA
* * *
1437641 AAAGAGTGCCACGGAGTCGTGGACTT-AAAAG----GGTGCCACGGAGTTGTGGGC-TTAGAAGG
1 AAAGAGTGCCACGGAGTTGTGGGCTTAAAAAGAAAAGGTGCCACGGAGTTGTGGGCTTTAAAAGG
1437700 AAAAGAAG-GTGCCACGGAGTTGTGGGCTTTAAAAAGGGAA
66 AAAA-AAGAGTGCCACGGAGTTGTGGGC-TT-AAAA-GGAA
1437740 AAAGAGTGCCACGGAGTTGTGGGCTTTAAAAAGAAAAAGGTGCCACGGAGTTGTGGGCTTTGAAA
1 AAAGAGTGCCACGGAGTTGTGGGC-TTAAAAAG-AAAAGGTGCCACGGAGTTGTGGGCTTT-AAA
* * *
1437805 AGGGAAAAAGAGTGCCACAGAGTTGTGGGCTTTAAAAAGAA
63 AGGAAAAAAGAGTGCCACGGAGTTGTGGGC-TTAAAAGGAA
* * * * * * *
1437846 AAAGTGTGCCACAGAGTTGTGGGCTTTAAAGGAAAAGGTGCCACGGAGGTGTGGAC-TTAAAGAT
1 AAAGAGTGCCACGGAGTTGTGGGCTTAAAAAGAAAAGGTGCCACGGAGTTGTGGGCTTTAAA-AG
*
1437910 G-AAAAA-AGTGCCACGGAATTGTGGGCTTTGAAAA-GAA
65 GAAAAAAGAGTGCCACGGAGTTGTGGGC-TT-AAAAGGAA
* * * * *
1437947 GAAG-GTGCCACGGAGTTGTGGGCTTTAAAGGAAAAGGTGCCACGAAGCTGTGGGCTTT
1 AAAGAGTGCCACGGAGTTGTGGGCTTAAAAAGAAAAGGTGCCACGGAGTTGTGGGCTTT
1438005 GAAGAAAAAA
Statistics
Matches: 403, Mismatches: 37, Indels: 50
0.82 0.08 0.10
Matches are distributed among these distances:
92 2 0.00
93 22 0.05
94 1 0.00
95 19 0.05
96 5 0.01
97 4 0.01
98 5 0.01
99 48 0.12
100 79 0.20
101 34 0.08
102 12 0.03
103 4 0.01
104 27 0.07
105 14 0.03
106 89 0.22
107 9 0.02
108 29 0.07
ACGTcount: A:0.34, C:0.13, G:0.34, T:0.20
Consensus pattern (102 bp):
AAAGAGTGCCACGGAGTTGTGGGCTTAAAAAGAAAAGGTGCCACGGAGTTGTGGGCTTTAAAAGG
AAAAAAGAGTGCCACGGAGTTGTGGGCTTAAAAGGAA
Found at i:1437678 original size:27 final size:27
Alignment explanation
Indices: 1437607--1437699 Score: 96
Period size: 27 Copynumber: 3.2 Consensus size: 27
1437597 GCTTTAAAGG
*
1437607 AAAAGAGTGCCACGGAGTCGTGGACTT
1 AAAAGGGTGCCACGGAGTCGTGGACTT
1437634 AAAAGGAAAAGAGTGCCACGGAGTCGTGGACTT
1 AAAA-G----G-GTGCCACGGAGTCGTGGACTT
* *
1437667 AAAAGGGTGCCACGGAGTTGTGGGCTT
1 AAAAGGGTGCCACGGAGTCGTGGACTT
*
1437694 AGAAGG
1 AAAAGG
1437700 AAAAGAAGGT
Statistics
Matches: 56, Mismatches: 4, Indels: 12
0.78 0.06 0.17
Matches are distributed among these distances:
27 28 0.50
28 2 0.04
32 1 0.02
33 25 0.45
ACGTcount: A:0.31, C:0.15, G:0.37, T:0.17
Consensus pattern (27 bp):
AAAAGGGTGCCACGGAGTCGTGGACTT
Found at i:1437718 original size:35 final size:34
Alignment explanation
Indices: 1437667--1438004 Score: 402
Period size: 34 Copynumber: 9.8 Consensus size: 34
1437657 TCGTGGACTT
* *
1437667 AAAAGGGTGCCACGGAGTTGTGGGC-TTAGAAGG
1 AAAAAGGTGCCACGGAGTTGTGGGCTTTAAAAGG
1437700 AAAAGAAGGTGCCACGGAGTTGTGGGCTTTAAAAAGGG
1 -AAA-AAGGTGCCACGGAGTTGTGGGCTTT-AAAA-GG
*
1437738 AAAAAGAGTGCCACGGAGTTGTGGGCTTTAAAAAG
1 AAAAAG-GTGCCACGGAGTTGTGGGCTTTAAAAGG
1437773 AAAAAGGTGCCACGGAGTTGTGGGCTTTGAAAAGGG
1 AAAAAGGTGCCACGGAGTTGTGGGCTTT-AAAA-GG
* *
1437809 AAAAAGAGTGCCACAGAGTTGTGGGCTTTAAAAAG
1 AAAAAG-GTGCCACGGAGTTGTGGGCTTTAAAAGG
*
1437844 AAAAAGTGTGCCACAGAGTTGTGGGCTTT-AAAGG
1 AAAAAG-GTGCCACGGAGTTGTGGGCTTTAAAAGG
* * *
1437878 -AAAAGGTGCCACGGAGGTGTGGAC-TTAAAGATG
1 AAAAAGGTGCCACGGAGTTGTGGGCTTTAAA-AGG
* *
1437911 AAAAAAGTGCCACGGAATTGTGGGCTTTGAAAA-G
1 AAAAAGGTGCCACGGAGTTGTGGGCTTT-AAAAGG
*
1437945 AAGAAGGTGCCACGGAGTTGTGGGCTTT-AAAGG
1 AAAAAGGTGCCACGGAGTTGTGGGCTTTAAAAGG
* *
1437978 -AAAAGGTGCCACGAAGCTGTGGGCTTT
1 AAAAAGGTGCCACGGAGTTGTGGGCTTT
1438005 GAAGAAAAAA
Statistics
Matches: 268, Mismatches: 22, Indels: 30
0.84 0.07 0.09
Matches are distributed among these distances:
31 2 0.01
32 45 0.17
33 8 0.03
34 75 0.28
35 64 0.24
36 23 0.09
37 49 0.18
38 2 0.01
ACGTcount: A:0.33, C:0.12, G:0.35, T:0.20
Consensus pattern (34 bp):
AAAAAGGTGCCACGGAGTTGTGGGCTTTAAAAGG
Found at i:1438019 original size:31 final size:32
Alignment explanation
Indices: 1437674--1438099 Score: 171
Period size: 32 Copynumber: 12.8 Consensus size: 32
1437664 CTTAAAAGGG
*
1437674 TGCCACGG-AGTTGTGGGCTTAGAAGGAAAAGAA
1 TGCCACGGAAGTTGTGGGCTTTGAA-GAAAA-AA
*
1437707 GGTGCCACGG-AGTTGTGGGCTTTAAAAAGGGAAAAAGA
1 --TGCCACGGAAGTTGTGGGCTTT--GAA--GAAAAA-A
* *
1437745 GTGCCACGG-AGTTGTGGGCTTTAAAAAGAAAAAGG
1 -TGCCACGGAAGTTGTGGGCTTT--GAAGAAAAA-A
1437780 TGCCACGG-AGTTGTGGGCTTTGAAAAGGGAAAAAGA
1 TGCCACGGAAGTTGTGGGCTTTG--AA--GAAAAA-A
* * *
1437816 GTGCCACAG-AGTTGTGGGCTTTAAAAAGAAAAAGTG
1 -TGCCACGGAAGTTGTGGGCTTT--GAAGAAAAA--A
* * **
1437852 TGCCACAG-AGTTGTGGGCTTTAAAGGAAAAGG
1 TGCCACGGAAGTTGTGGGCTTTGAA-GAAAAAA
* * * *
1437884 TGCCACGG-AGGTGTGGACTTAAAGATGAAAAAA
1 TGCCACGGAAGTTGTGGGCTT--TGAAGAAAAAA
1437917 GTGCCACGGAA-TTGTGGGCTTTGAA-AAGAAGAA
1 -TGCCACGGAAGTTGTGGGCTTTGAAGAA-AA-AA
* **
1437950 GGTGCCACGG-AGTTGTGGGCTTTAAAGGAAAAGG
1 --TGCCACGGAAGTTGTGGGCTTTGAA-GAAAAAA
*
1437984 TGCCAC-GAAGCTGTGGGCTTTGAAGAAAAAA
1 TGCCACGGAAGTTGTGGGCTTTGAAGAAAAAA
* * * *
1438015 TGCCACTG-AGTCGTGGACTTTG-AGACAAAA
1 TGCCACGGAAGTTGTGGGCTTTGAAGAAAAAA
* * * * *
1438045 TGCCACTG-AGTCGTGGACTTTAAAGGAAAAGA
1 TGCCACGGAAGTTGTGGGCTTTGAA-GAAAAAA
* * *
1438077 TGCCACTG-AGTCGTGGACTTTGA
1 TGCCACGGAAGTTGTGGGCTTTGA
1438100 GCAGAGATTG
Statistics
Matches: 327, Mismatches: 37, Indels: 57
0.78 0.09 0.14
Matches are distributed among these distances:
30 28 0.09
31 26 0.08
32 70 0.21
33 11 0.03
34 67 0.20
35 57 0.17
36 9 0.03
37 52 0.16
38 7 0.02
ACGTcount: A:0.33, C:0.13, G:0.33, T:0.21
Consensus pattern (32 bp):
TGCCACGGAAGTTGTGGGCTTTGAAGAAAAAA
Found at i:1438080 original size:62 final size:63
Alignment explanation
Indices: 1437996--1438193 Score: 280
Period size: 62 Copynumber: 3.2 Consensus size: 63
1437986 CCACGAAGCT
* * * *
1437996 GTGGGCTTTGAAGAAAAAATGCCACTGAGTCGTGGACTTTGAGACA-A-AATGCCACTGAGTC
1 GTGGACTTTAAAGAAAAGATGCCACTGAGTCGTGGACTTTGAGACAGAGATTGCCACTGAGTC
*
1438057 GTGGACTTTAAAGGAAAAGATGCCACTGAGTCGTGGACTTTGAG-CAGAGATTGCCACTGGGTC
1 GTGGACTTTAAA-GAAAAGATGCCACTGAGTCGTGGACTTTGAGACAGAGATTGCCACTGAGTC
* *
1438120 GTGGACTTT-GAGAAGAGATTGCCACTGAGTCGTGGACTTTGAGA-AGAGATTGCCACTGAGTC
1 GTGGACTTTAAAGAAAAGA-TGCCACTGAGTCGTGGACTTTGAGACAGAGATTGCCACTGAGTC
1438182 GTGGACTTTAAA
1 GTGGACTTTAAA
1438194 AAGGTATTTG
Statistics
Matches: 122, Mismatches: 9, Indels: 10
0.87 0.06 0.07
Matches are distributed among these distances:
61 18 0.15
62 82 0.67
63 22 0.18
ACGTcount: A:0.28, C:0.17, G:0.30, T:0.25
Consensus pattern (63 bp):
GTGGACTTTAAAGAAAAGATGCCACTGAGTCGTGGACTTTGAGACAGAGATTGCCACTGAGTC
Found at i:1438098 original size:93 final size:93
Alignment explanation
Indices: 1437852--1438190 Score: 287
Period size: 93 Copynumber: 3.6 Consensus size: 93
1437842 AGAAAAAGTG
* * * * * * *
1437852 TGCCACAGAGTTGTGGGCTTTAAAGGAAAAGGTGCCACGGAGGT-GTGGACTTAAAGATGAAAAA
1 TGCCACTGAGTCGTGGACTTTAAAGGAAAAGATGCCACTGA-GTCGTGGACTT--TGAAGAAAAA
* * * * *
1437916 AGTGCCACGGAATTGTGGGCTTTGAAAAGAAGAA
63 A-TGCCACTGAGTCGTGGACTTTG-AGA-AAGAA
* * * * *
1437950 GGTGCCACGGAGTTGTGGGCTTTAAAGGAAAAGGTGCCAC-GAAG-CTGTGGGCTTTGAAGAAAA
1 --TGCCACTGAGTCGTGGACTTTAAAGGAAAAGATGCCACTG-AGTC-GTGGACTTTGAAGAAAA
1438013 AATGCCACTGAGTCGTGGACTTTGAGACAA-AA
62 AATGCCACTGAGTCGTGGACTTTGAGA-AAGAA
* * *
1438045 TGCCACTGAGTCGTGGACTTTAAAGGAAAAGATGCCACTGAGTCGTGGACTTTG-AGCAGAGATT
1 TGCCACTGAGTCGTGGACTTTAAAGGAAAAGATGCCACTGAGTCGTGGACTTTGAAG-AAAAAAT
* *
1438109 GCCACTGGGTCGTGGACTTTGAGAAGAGAT
65 GCCACTGAGTCGTGGACTTTGAGAA-AGAA
* *
1438139 TGCCACTGAGTCGTGGACTTT-GA-GAAGAGATTGCCACTGAGTCGTGGACTTT
1 TGCCACTGAGTCGTGGACTTTAAAGGAAAAGA-TGCCACTGAGTCGTGGACTTT
1438191 AAAAAGGTAT
Statistics
Matches: 208, Mismatches: 22, Indels: 25
0.82 0.09 0.10
Matches are distributed among these distances:
92 9 0.04
93 95 0.46
94 24 0.12
95 2 0.01
96 4 0.02
97 18 0.09
98 9 0.04
99 2 0.01
100 45 0.22
ACGTcount: A:0.29, C:0.16, G:0.32, T:0.23
Consensus pattern (93 bp):
TGCCACTGAGTCGTGGACTTTAAAGGAAAAGATGCCACTGAGTCGTGGACTTTGAAGAAAAAATG
CCACTGAGTCGTGGACTTTGAGAAAGAA
Found at i:1438115 original size:31 final size:31
Alignment explanation
Indices: 1438015--1438190 Score: 259
Period size: 31 Copynumber: 5.7 Consensus size: 31
1438005 GAAGAAAAAA
*
1438015 TGCCACTGAGTCGTGGACTTTGAGACA-A-AA
1 TGCCACTGAGTCGTGGACTTTGAGA-AGAGAT
* *
1438045 TGCCACTGAGTCGTGGACTTTAAAGGAAAAGA-
1 TGCCACTGAGTCGTGGACTTT-GA-GAAGAGAT
*
1438077 TGCCACTGAGTCGTGGACTTTGAGCAGAGAT
1 TGCCACTGAGTCGTGGACTTTGAGAAGAGAT
*
1438108 TGCCACTGGGTCGTGGACTTTGAGAAGAGAT
1 TGCCACTGAGTCGTGGACTTTGAGAAGAGAT
1438139 TGCCACTGAGTCGTGGACTTTGAGAAGAGAT
1 TGCCACTGAGTCGTGGACTTTGAGAAGAGAT
1438170 TGCCACTGAGTCGTGGACTTT
1 TGCCACTGAGTCGTGGACTTT
1438191 AAAAAGGTAT
Statistics
Matches: 134, Mismatches: 7, Indels: 9
0.89 0.05 0.06
Matches are distributed among these distances:
30 26 0.19
31 83 0.62
32 24 0.18
33 1 0.01
ACGTcount: A:0.26, C:0.18, G:0.31, T:0.26
Consensus pattern (31 bp):
TGCCACTGAGTCGTGGACTTTGAGAAGAGAT
Found at i:1446469 original size:52 final size:52
Alignment explanation
Indices: 1446399--1446519 Score: 224
Period size: 52 Copynumber: 2.3 Consensus size: 52
1446389 GAAAATTTAT
*
1446399 CTGCATGTATCGATACATTTAATAGTGTATCGATACATCTGGGCAAATTTGC
1 CTGCATGTATCGATACATTTAATAATGTATCGATACATCTGGGCAAATTTGC
*
1446451 CTGCATGTATCGATACATTTTATAATGTATCGATACATCTGGGCAAATTTGC
1 CTGCATGTATCGATACATTTAATAATGTATCGATACATCTGGGCAAATTTGC
1446503 CTGCATGTATCGATACA
1 CTGCATGTATCGATACA
1446520 AAGATCAGTG
Statistics
Matches: 67, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
52 67 1.00
ACGTcount: A:0.29, C:0.18, G:0.18, T:0.35
Consensus pattern (52 bp):
CTGCATGTATCGATACATTTAATAATGTATCGATACATCTGGGCAAATTTGC
Found at i:1446532 original size:52 final size:51
Alignment explanation
Indices: 1446399--1446539 Score: 212
Period size: 52 Copynumber: 2.7 Consensus size: 51
1446389 GAAAATTTAT
1446399 CTGCATGTATCGATACATTTAATAGTGTATCGATACATCTGGGCAAATTTGC
1 CTGCATGTATCGATACA-TTAATAGTGTATCGATACATCTGGGCAAATTTGC
* *
1446451 CTGCATGTATCGATACATTTTATAATGTATCGATACATCTGGGCAAATTTGC
1 CTGCATGTATCGATACA-TTAATAGTGTATCGATACATCTGGGCAAATTTGC
*
1446503 CTGCATGTATCGATACA-AAGATCAGTGTATCGATACA
1 CTGCATGTATCGATACATTA-AT-AGTGTATCGATACA
1446540 ATGTATCGAT
Statistics
Matches: 82, Mismatches: 5, Indels: 4
0.90 0.05 0.04
Matches are distributed among these distances:
51 2 0.02
52 80 0.98
ACGTcount: A:0.30, C:0.18, G:0.18, T:0.33
Consensus pattern (51 bp):
CTGCATGTATCGATACATTAATAGTGTATCGATACATCTGGGCAAATTTGC
Found at i:1446546 original size:13 final size:13
Alignment explanation
Indices: 1446528--1446552 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
1446518 CAAAGATCAG
1446528 TGTATCGATACAA
1 TGTATCGATACAA
1446541 TGTATCGATACA
1 TGTATCGATACA
1446553 TGTGAGTAAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:1446635 original size:33 final size:33
Alignment explanation
Indices: 1446593--1446662 Score: 104
Period size: 33 Copynumber: 2.1 Consensus size: 33
1446583 GGCAGTAGCT
1446593 TACATTGTATCGATACAAAAAAATATGTATCGA
1 TACATTGTATCGATACAAAAAAATATGTATCGA
* ***
1446626 TACATTGTATCGATACAACATTTTATGTATCGA
1 TACATTGTATCGATACAAAAAAATATGTATCGA
1446659 TACA
1 TACA
1446663 AATCGTTGAA
Statistics
Matches: 33, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
33 33 1.00
ACGTcount: A:0.40, C:0.14, G:0.11, T:0.34
Consensus pattern (33 bp):
TACATTGTATCGATACAAAAAAATATGTATCGA
Found at i:1446636 original size:13 final size:13
Alignment explanation
Indices: 1446618--1446642 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
1446608 CAAAAAAATA
1446618 TGTATCGATACAT
1 TGTATCGATACAT
1446631 TGTATCGATACA
1 TGTATCGATACA
1446643 ACATTTTATG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:1447137 original size:62 final size:63
Alignment explanation
Indices: 1447048--1447181 Score: 184
Period size: 62 Copynumber: 2.2 Consensus size: 63
1447038 TCCATTTTGT
* * * *
1447048 CCTCAAAGAGCAGGACAACTTTTTCTTTTCAAAGCCCACACATGTTGTTGGCACCCTTTAG-C
1 CCTCAAAGAGCAAGACAACTTTCTCTTTTCAAAGCCCACACAAGTTGATGGCACCCTTTAGTC
* *
1447110 CCTCAAAGAGCAAGACGTA-TTTCTCTTTTCAAAGCCCACAGAAGTTGATGGCACCCTTTAGTC
1 CCTCAAAGAGCAAGAC-AACTTTCTCTTTTCAAAGCCCACACAAGTTGATGGCACCCTTTAGTC
1447173 CCT-AAAGAG
1 CCTCAAAGAG
1447182 AAGGATGCCT
Statistics
Matches: 64, Mismatches: 6, Indels: 4
0.86 0.08 0.05
Matches are distributed among these distances:
62 59 0.92
63 5 0.08
ACGTcount: A:0.28, C:0.28, G:0.17, T:0.27
Consensus pattern (63 bp):
CCTCAAAGAGCAAGACAACTTTCTCTTTTCAAAGCCCACACAAGTTGATGGCACCCTTTAGTC
Found at i:1447204 original size:62 final size:62
Alignment explanation
Indices: 1446967--1447205 Score: 178
Period size: 62 Copynumber: 3.9 Consensus size: 62
1446957 GTGTCTACAG
* * * * * * * * * **
1446967 AGTTCATGGCACCCTTTAGTCCTTAAAAACCAAGATGCCTTTTTCGTTTAAAAACCCACATG
1 AGTTGATGGCACCCTTTAGCCCTCAAAGAGCAAGACGCCTTTTTCTTTTCAAAGCCCACACA
* * * * * * * **
1447029 GGTTGGTGG-TCCATTTTGTCCTCAAAGAGCAGGACAACTTTTTCTTTTCAAAGCCCACACA
1 AGTTGATGGCACCCTTTAGCCCTCAAAGAGCAAGACGCCTTTTTCTTTTCAAAGCCCACACA
* * ** * *
1447090 TGTTGTTGGCACCCTTTAGCCCTCAAAGAGCAAGACGTATTTCTCTTTTCAAAGCCCACAGA
1 AGTTGATGGCACCCTTTAGCCCTCAAAGAGCAAGACGCCTTTTTCTTTTCAAAGCCCACACA
* * *
1447152 AGTTGATGGCACCCTTTAGTCCCT-AAAGAG-AAGGATGCCTTTTTCCTCTCAAAG
1 AGTTGATGGCACCCTTTAG-CCCTCAAAGAGCAA-GACGCCTTTTTCTTTTCAAAG
1447206 AGCAAGATGC
Statistics
Matches: 136, Mismatches: 38, Indels: 6
0.76 0.21 0.03
Matches are distributed among these distances:
61 46 0.34
62 86 0.63
63 4 0.03
ACGTcount: A:0.27, C:0.26, G:0.18, T:0.30
Consensus pattern (62 bp):
AGTTGATGGCACCCTTTAGCCCTCAAAGAGCAAGACGCCTTTTTCTTTTCAAAGCCCACACA
Found at i:1447206 original size:26 final size:26
Alignment explanation
Indices: 1447176--1447231 Score: 87
Period size: 26 Copynumber: 2.2 Consensus size: 26
1447166 TTTAGTCCCT
1447176 AAAGAG-AAGGATGCCTTTTTCCTCTC
1 AAAGAGCAA-GATGCCTTTTTCCTCTC
*
1447202 AAAGAGCAAGATGCCTTTTTCCTTTC
1 AAAGAGCAAGATGCCTTTTTCCTCTC
1447228 AAAG
1 AAAG
1447232 CCCCCATCAT
Statistics
Matches: 28, Mismatches: 1, Indels: 2
0.90 0.03 0.06
Matches are distributed among these distances:
26 26 0.93
27 2 0.07
ACGTcount: A:0.30, C:0.21, G:0.18, T:0.30
Consensus pattern (26 bp):
AAAGAGCAAGATGCCTTTTTCCTCTC
Found at i:1447404 original size:62 final size:62
Alignment explanation
Indices: 1447199--1447775 Score: 558
Period size: 62 Copynumber: 9.4 Consensus size: 62
1447189 CCTTTTTCCT
* * * * * *
1447199 CTCAAAGAGCAAGATGCCTTTTTCCTTTCAAAGCCCCCATC-A-TTAGCGACAGCCTTTAGTC
1 CTCAAAGAGCAGGATGCCTTTTTCCTTTCAAAGCCCACA-CGAGTTGGTGGCACCCTTTAGTC
* * * * ** **
1447260 CTCAAAAAGTAAGATGCCTTTTCCCTTTCAAAGCCTGCAC-AGTTGGTGGCACTTTTTAGTC
1 CTCAAAGAGCAGGATGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGTC
* * * * * * *
1447321 CTCAAAGAGCTGGATTGCCTTTTTCTTTTCAGAGCCCAGAGGGGTTGGTGGCACCCTTTACTC
1 CTCAAAGAGCAGGA-TGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGTC
* * * *
1447384 CTCAAAGAGGAGGATGCCTTTTTCC--TCAAAGGCCATACGAGTTTGTGGCACCCTTTAGTC
1 CTCAAAGAGCAGGATGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGTC
* * * * * * * * * * *
1447444 CTTAAAAAGCAGGATACCATTTTCGTTTCAAAACCTACACGGGTTGGTGG-TCCATTTTGTC
1 CTCAAAGAGCAGGATGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGTC
* ** * * *
1447505 CTCAAAGAGTAGGACACCTTTTTCTTTTCAAA-CCACACACGTGTTGTTGGCACCCTTTAGTC
1 CTCAAAGAGCAGGATGCCTTTTTCCTTTCAAAGCC-CACACGAGTTGGTGGCACCCTTTAGTC
* * **
1447567 CTCAAAGAGCAAGACGTATTTTTCCTTTCAAAGCCCACA-GAAGTTGGTGGCACCCTTTAGTC
1 CTCAAAGAGCAGGATGCCTTTTTCCTTTCAAAGCCCACACG-AGTTGGTGGCACCCTTTAGTC
* * * * *
1447629 CTCAAAGAGCAGGATGGCTTTTTCCTTTCAAAGCCCGCACTAGTTGGTGGTACCCTTCAGTC
1 CTCAAAGAGCAGGATGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGTC
* * * *
1447691 CTCAAAAAGCAGGACGCATTTTTCCTTTCAAATCCCACACGAGTTGGTGGCACCCTTTAGTC
1 CTCAAAGAGCAGGATGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGTC
*
1447753 CTCAAAGAGTAGGATGCCTTTTT
1 CTCAAAGAGCAGGATGCCTTTTT
1447776 GAGTGGCACC
Statistics
Matches: 414, Mismatches: 92, Indels: 19
0.79 0.18 0.04
Matches are distributed among these distances:
60 51 0.12
61 104 0.25
62 228 0.55
63 31 0.07
ACGTcount: A:0.24, C:0.26, G:0.20, T:0.30
Consensus pattern (62 bp):
CTCAAAGAGCAGGATGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGTC
Found at i:1447794 original size:41 final size:41
Alignment explanation
Indices: 1447737--1447816 Score: 133
Period size: 41 Copynumber: 2.0 Consensus size: 41
1447727 ACACGAGTTG
* * *
1447737 GTGGCACCCTTTAGTCCTCAAAGAGTAGGATGCCTTTTTGA
1 GTGGCACCCTTTAGTCCTCAAAAAGCAAGATGCCTTTTTGA
1447778 GTGGCACCCTTTAGTCCTCAAAAAGCAAGATGCCTTTTT
1 GTGGCACCCTTTAGTCCTCAAAAAGCAAGATGCCTTTTT
1447817 CCTTTCAAAG
Statistics
Matches: 36, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
41 36 1.00
ACGTcount: A:0.24, C:0.24, G:0.21, T:0.31
Consensus pattern (41 bp):
GTGGCACCCTTTAGTCCTCAAAAAGCAAGATGCCTTTTTGA
Found at i:1447908 original size:164 final size:165
Alignment explanation
Indices: 1447613--1447939 Score: 476
Period size: 164 Copynumber: 2.0 Consensus size: 165
1447603 ACAGAAGTTG
* * * * *
1447613 GTGGCACCCTTTAGTCCTCAAAGAGCAGGATGGCTTTTTCCTTTCAAAGCCCGCACTAGTTGGTG
1 GTGGCACCCTTTAGTCCTCAAAAAGCAAGATGCCTTTTTCCTTTCAAAGCCCACACTAATTGGTG
* * * * *
1447678 GTACCCTTCAGTCCTCAAAAAGCAGGACGCATTTTTCCTTTCAAATCCCACACGAGTTGGTGGCA
66 GCACCCTTCAGTCCTCAAAAAGCAAGACACATTTTTCCTTTCAAAGCCCACACGAGTTGCTGGCA
*
1447743 CCCTTTAGTCCTCAAAGAGTAGGATGCCTTTTTGA
131 CCCTTTAGTCCTCAAAGAGCAGGATGCCTTTTTGA
*
1447778 GTGGCACCCTTTAGTCCTCAAAAAGCAAGATGCCTTTTTCCTTTCAAAGCCCACAC-AATTGTTG
1 GTGGCACCCTTTAGTCCTCAAAAAGCAAGATGCCTTTTTCCTTTCAAAGCCCACACTAATTGGTG
* ** * *
1447842 GCACCCTTTAGTCCTCAAAGGGCAAGACACCTTTTTCCTTTCAAAGCCTACACGAGTTGCTGGCA
66 GCACCCTTCAGTCCTCAAAAAGCAAGACACATTTTTCCTTTCAAAGCCCACACGAGTTGCTGGCA
* *
1447907 CCCTTTAGTCCTCAAATAGCAGGATGGCTTTTT
131 CCCTTTAGTCCTCAAAGAGCAGGATGCCTTTTT
1447940 CTTTTCAAAG
Statistics
Matches: 143, Mismatches: 19, Indels: 1
0.88 0.12 0.01
Matches are distributed among these distances:
164 91 0.64
165 52 0.36
ACGTcount: A:0.24, C:0.28, G:0.19, T:0.29
Consensus pattern (165 bp):
GTGGCACCCTTTAGTCCTCAAAAAGCAAGATGCCTTTTTCCTTTCAAAGCCCACACTAATTGGTG
GCACCCTTCAGTCCTCAAAAAGCAAGACACATTTTTCCTTTCAAAGCCCACACGAGTTGCTGGCA
CCCTTTAGTCCTCAAAGAGCAGGATGCCTTTTTGA
Found at i:1447938 original size:62 final size:62
Alignment explanation
Indices: 1447778--1448102 Score: 454
Period size: 62 Copynumber: 5.3 Consensus size: 62
1447768 GCCTTTTTGA
* *
1447778 GTGGCACCCTTTAGTCCTCAAAAAGCAAGATGCCTTTTTCCTTTCAAAGCCCACAC-AATTG
1 GTGGCACCCTTTAGTCCTCAAAGAGCAAGATGCCTTTTTCCTTTCAAAGCCCACACGAGTTG
* * ** *
1447839 TTGGCACCCTTTAGTCCTCAAAGGGCAAGACACCTTTTTCCTTTCAAAGCCTACACGAGTTG
1 GTGGCACCCTTTAGTCCTCAAAGAGCAAGATGCCTTTTTCCTTTCAAAGCCCACACGAGTTG
* * * * * *
1447901 CTGGCACCCTTTAGTCCTCAAATAGCAGGATGGCTTTTTCTTTTCAAAGCCCACACAAGTTG
1 GTGGCACCCTTTAGTCCTCAAAGAGCAAGATGCCTTTTTCCTTTCAAAGCCCACACGAGTTG
* * * * *
1447963 GTGGCACCCTTTAGTCTTCAAAGAGCTAGATGCCTTTTTCTTTTCAAAGCACACACGAGTTT
1 GTGGCACCCTTTAGTCCTCAAAGAGCAAGATGCCTTTTTCCTTTCAAAGCCCACACGAGTTG
* *
1448025 GTGGGACCCTTTAGTCCTCAAAGAGCAAGATGCCTTTTTCCTTTCAACGCCCACACGAGTTG
1 GTGGCACCCTTTAGTCCTCAAAGAGCAAGATGCCTTTTTCCTTTCAAAGCCCACACGAGTTG
*
1448087 GTGGCACCCTTCAGTC
1 GTGGCACCCTTTAGTC
1448103 TCCTTTCAAA
Statistics
Matches: 228, Mismatches: 35, Indels: 1
0.86 0.13 0.00
Matches are distributed among these distances:
61 50 0.22
62 178 0.78
ACGTcount: A:0.24, C:0.28, G:0.18, T:0.30
Consensus pattern (62 bp):
GTGGCACCCTTTAGTCCTCAAAGAGCAAGATGCCTTTTTCCTTTCAAAGCCCACACGAGTTG
Found at i:1447948 original size:226 final size:227
Alignment explanation
Indices: 1447552--1448001 Score: 654
Period size: 226 Copynumber: 2.0 Consensus size: 227
1447542 CACGTGTTGT
* * *
1447552 TGGCACCCTTTAGTCCTCAAAGAGCAAGACGTATTTTTCCTTTCAAAGCCCACAGAAGTTGGTGG
1 TGGCACCCTTTAGTCCTCAAAAAGCAAGACGCATTTTTCCTTTCAAAGCCCACACAAGTTGGTGG
* *** * * * *
1447617 CACCCTTTAGTCCTCAAAGAGCAGGATGGCTTTTTCCTTTCAAAGCCCGCACTAGTTGGTGGTAC
66 CACCCTTTAGTCCTCAAAGAGCAAGACACCTTTTTCCTTTCAAAGCCCACACGAGTTGCTGGCAC
* *
1447682 CCTTCAGTCCTCAAAAAGCAGGACGCATTTTTCCTTTCAAATCCCACACGAGTTGGTGGCACCCT
131 CCTTCAGTCCTCAAAAAGCAGGACGCATTTTTCCTTTCAAAGCCCACACAAGTTGGTGGCACCCT
1447747 TTAGTCCTCAAAGAG-TAGGATGCCTTTTTGAG
196 TTAGTCCTCAAAGAGCTA-GATGCCTTTTTGAG
* * *
1447779 TGGCACCCTTTAGTCCTCAAAAAGCAAGATGCCTTTTTCCTTTCAAAGCCCACACAA-TTGTTGG
1 TGGCACCCTTTAGTCCTCAAAAAGCAAGACGCATTTTTCCTTTCAAAGCCCACACAAGTTGGTGG
* *
1447843 CACCCTTTAGTCCTCAAAGGGCAAGACACCTTTTTCCTTTCAAAGCCTACACGAGTTGCTGGCAC
66 CACCCTTTAGTCCTCAAAGAGCAAGACACCTTTTTCCTTTCAAAGCCCACACGAGTTGCTGGCAC
* * * *
1447908 CCTTTAGTCCTCAAATAGCAGGATGGC-TTTTTCTTTTCAAAGCCCACACAAGTTGGTGGCACCC
131 CCTTCAGTCCTCAAAAAGCAGGA-CGCATTTTTCCTTTCAAAGCCCACACAAGTTGGTGGCACCC
*
1447972 TTTAGTCTTCAAAGAGCTAGATGCCTTTTT
195 TTTAGTCCTCAAAGAGCTAGATGCCTTTTT
1448002 CTTTTCAAAG
Statistics
Matches: 198, Mismatches: 23, Indels: 5
0.88 0.10 0.02
Matches are distributed among these distances:
226 142 0.72
227 56 0.28
ACGTcount: A:0.24, C:0.27, G:0.19, T:0.30
Consensus pattern (227 bp):
TGGCACCCTTTAGTCCTCAAAAAGCAAGACGCATTTTTCCTTTCAAAGCCCACACAAGTTGGTGG
CACCCTTTAGTCCTCAAAGAGCAAGACACCTTTTTCCTTTCAAAGCCCACACGAGTTGCTGGCAC
CCTTCAGTCCTCAAAAAGCAGGACGCATTTTTCCTTTCAAAGCCCACACAAGTTGGTGGCACCCT
TTAGTCCTCAAAGAGCTAGATGCCTTTTTGAG
Found at i:1448069 original size:350 final size:351
Alignment explanation
Indices: 1447427--1465654 Score: 8566
Period size: 350 Copynumber: 50.0 Consensus size: 351
1447417 CATACGAGTT
* * * * * * * * *
1447427 TGTGGCACCCTTTAGTCCTTAAAAAGCAGGATACCATTTTCGTTTCAAAACCTACACGGGTTGGT
1 TGTGGCACCCTTTAGTCCTCAAAGAGCAAGATGCCTTTTTCCTTTCAAAGCCCACAC-AGTTGGT
* * * * * ** * * *
1447492 GG-TCCATTTTGTCCTCAAAGAGTAGGACACCTTTTTCTTTTCAAA-CCACACACGTGTTGTTGG
65 GGCACCCTTTAGTCCTCAAAGAGCAAGATGCCTTTTTCCTTTCAAAGCC-CACACGAGTTGGTGG
* * ** *
1447555 CACCCTTTAGTCCTCAAAGAGCAAGACGTATTTTTCCTTTCAAAGCCCACAGAAGTTGGTGGCAC
129 CACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTTTCCTTTCAAAGCCCACACAAGTTGGTGGCAC
* * * * *
1447620 CCTTTAGTCCTCAAAGAGCAGGATGGCTTTTTCCTTTCAAAGCCCGCACTAGTTGGTGGTACCCT
194 CCTTTAGTCCTCAAAGAGCAGGATGCCTTTTTCTTTTCAAAGCCCACACGAGTTGGTGGCACCCT
* * * * *
1447685 TCAGTCCTCAAAAAGCAGGACGCATTTTTCCTTTCAAATCCCACACGAGTTGGTGGCACCCTTTA
259 TTAGTCCTCAAAGAGCAGGATGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTA
*
1447750 GTCCTCAAAGAGTAGGATGCCTTTTTGA
324 GTCCTCAAAGAGCAGGATGCCTTTTTGA
* * *
1447778 -GTGGCACCCTTTAGTCCTCAAAAAGCAAGATGCCTTTTTCCTTTCAAAGCCCACACAATTGTTG
1 TGTGGCACCCTTTAGTCCTCAAAGAGCAAGATGCCTTTTTCCTTTCAAAGCCCACACAGTTGGTG
* ** * *
1447842 GCACCCTTTAGTCCTCAAAGGGCAAGACACCTTTTTCCTTTCAAAGCCTACACGAGTTGCTGGCA
66 GCACCCTTTAGTCCTCAAAGAGCAAGATGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCA
* * *
1447907 CCCTTTAGTCCTCAAATAGCAGGATGGCTTTTTCTTTTCAAAGCCCACACAAGTTGGTGGCACCC
131 CCCTTTAGTCCTCAAAGAGCAGGATGCCTTTTTCCTTTCAAAGCCCACACAAGTTGGTGGCACCC
* * * *
1447972 TTTAGTCTTCAAAGAGCTA-GATGCCTTTTTCTTTTCAAAGCACACACGAGTTTGTGGGACCCTT
196 TTTAGTCCTCAAAGAGC-AGGATGCCTTTTTCTTTTCAAAGCCCACACGAGTTGGTGGCACCCTT
* * *
1448036 TAGTCCTCAAAGAGCAAGATGCCTTTTTCCTTTCAACGCCCACACGAGTTGGTGGCACCCTTCAG
260 TAGTCCTCAAAGAGCAGGATGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAG
** * ***
1448101 TCTCCTTTCAAAGCCCA-CA---CAAATTG-
325 --TCC--TCAAAGAGCAGGATGCCTTTTTGA
** * * * *
1448127 -GTGGCACCCTTTAGTCCTCAAAGAGCAAGACACCTTTTTCATTTCAAAGCCTACAGGAGTTGTT
1 TGTGGCACCCTTTAGTCCTCAAAGAGCAAGATGCCTTTTTCCTTTCAAAGCCCACA-CAGTTGGT
* * * ** * *
1448191 GGCACCCTTTAGTCCTCGAAGAGTAGGACACCTTTTTCCTTTCAAAGCTCACACAAGTTGGTGGC
65 GGCACCCTTTAGTCCTCAAAGAGCAAGATGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGC
* * **
1448256 ACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTTTCATTTCAAAGCCCACACGAGTTCATGGCACC
130 ACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTTTCCTTTCAAAGCCCACACAAGTTGGTGGCACC
* * * * * * * * * * *
1448321 CTTTAGTCCTTAAAAACCAAGATGCC-TTTTCGTTTAAAAACCCACATGGGTTGGTGG-TCCATT
195 CTTTAGTCCTCAAAGAGCAGGATGCCTTTTTCTTTTCAAAGCCCACACGAGTTGGTGGCACCCTT
* *** * *
1448384 TTGTCCTCAAAGAGCAGGACAACTTTTTCTTTTCAAAGCCCACAC-ATGTTGTTGGCACCCTTTA
260 TAGTCCTCAAAGAGCAGGATGCCTTTTTCCTTTCAAAGCCCACACGA-GTTGGTGGCACCCTTTA
* * *
1448448 GCCCTCAAAGAGCAAGACGTATTTCTCTTTTCAAAGCCCACAGAA
324 GTCCTCAAAGAGC-AG--G-A-TGC-CTTTT----------TG-A
* * *
1448493 GTTGATGGCACCCTTTAGTCC-CTAAAGAG-AAGGATGCCTTTTTCCTTTCAATGCCCGCTCGAG
1 --TG-TGGCACCCTTTAGTCCTC-AAAGAGCAA-GATGCCTTTTTCCTTTCAAAGCCCACAC-AG
* * * * * * *
1448556 TTGGTGGCACCCTTCAGTCCTCAAAAATCAAGATGCCTTTTTGCTTTCAAAGCCAACACTAGTTA
60 TTGGTGGCACCCTTTAGTCCTCAAAGAGCAAGATGCCTTTTTCCTTTCAAAGCCCACACGAGTTG
*
1448621 GTGGCACCCTTTAGTCCTCAAAGAGTAGGATGCC---TT--TTT----G--------AG-TGGT-
125 GTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTTTCCTTTCAAAGCCCACACAAGTTGGTG
* * * * *
1448667 --ACCCTTTAGTCCTCAAAGAGCAAGACGCCTTTTTCCTTTCAACGCCCATACGAGTTGGTGGCA
190 GCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTTTCTTTTCAAAGCCCACACGAGTTGGTGGCA
* * * ** * * * *
1448730 CCCTTTAGCCCTCAAAGAGCAAGACGTATTTCTCTTTTTAAAGCCCACA-GAAGTTGATGGCACC
255 CCCTTTAGTCCTCAAAGAGCAGGATGCCTTTTTCCTTTCAAAGCCCACACG-AGTTGGTGGCACC
*
1448794 CTTTAGTCCCCAAAGAGCAGGATGCCTTTTTCCTTTCAAAGCCCGCACGA
319 CTTTAGTCCTCAAAGAGCAGGATGCC---TT--TTT------------GA
* * * * *
1448844 GTTGGTGGCACCCTTCAGTCCTCAAAAATCAAGATGCCTTTTTGCTTTCAAAGCCAACACTAGTT
1 --T-GTGGCACCCTTTAGTCCTCAAAGAGCAAGATGCCTTTTTCCTTTCAAAGCCCACAC-AGTT
* * * *
1448909 AGTGGCACCCTTTAGTCTTCAAAGAGTAGGATGCC---TT--TTT------------GAG-TGGT
62 GGTGGCACCCTTTAGTCCTCAAAGAGCAAGATGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGT
* * *
1448956 ---ACCCTTTAGTCCTCAAAGAGCAAGACGCCTTTTTCCTTTCGAAGCCCACAC-AGTTGGTGGC
127 GGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTTTCCTTTCAAAGCCCACACAAGTTGGTGGC
* ** * * *
1449017 ACCCTTTAGTCCTCAAAGAGCAAGACACCTTTTTCATTTCAAAGCCTACACGAGTTGCTGGCACC
192 ACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTTTCTTTTCAAAGCCCACACGAGTTGGTGGCACC
* * * **
1449082 CTTTAGTCGTCGAAGAGTAGGACACCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTT
257 CTTTAGTCCTCAAAGAGCAGGATGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTT
**
1449147 TAGTCCTCAAAGAGCAGGCCGCCTTTTTCTTTTCGAAGCCCACACAA
322 TAGTCCTCAAAGAGCAGGATGCC----T-TTTT----G--------A
* * *
1449194 GTTGGTGGCACCCTTTAGTCCTCAAAAATCAGGATGCCTTTTTCCTTTCAAAGCCCACACAAGTT
1 --T-GTGGCACCCTTTAGTCCTCAAAGAGCAAGATGCCTTTTTCCTTTCAAAGCCCACAC-AGTT
* * * ** *
1449259 TGTGGCACCCTTTAGTCCTTAAAGAGCAAGATGTCTTTTTCCTTTCAGCGCCCACACGTGTTGGT
62 GGTGGCACCCTTTAGTCCTCAAAGAGCAAGATGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGT
1449324 GGCACCC-----T--T-------CA-G-T--C----TCCTTTCAAAGCCCACACAAGTTGGTGGC
127 GGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTTTCCTTTCAAAGCCCACACAAGTTGGTGGC
* * * * * *
1449367 ACCCTTCAGTCCTCAAAGAGCAGGATGCCTTTCTCCTTTCAAAGCCAACACGAGTTGGTGACATC
192 ACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTTTCTTTTCAAAGCCCACACGAGTTGGTGGCACC
* * * * * * *
1449432 TTTTAGTCCTCAAAAAGCAGGTTGCCTTTTTCGTTTCAAA-CCTACACGGGTTGGTGGC-CTCAT
257 CTTTAGTCCTCAAAGAGCAGGATGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCAC-CCT
** * *
1449495 TTTTTCCTCAAAGAGTAGGACTCCTTTTTCTTTTCAAAGCCTACACGA
321 TTAGTCCTCAAAGAGCAGGA-TGC-----CTTTT-------T----GA
* * * *
1449543 GTTTGTGGCACCCTTTAGTTCTGAAAGAGCAGGATGCCTTTTTCTTTTCAAAGCCCACACGAGTT
1 ---TGTGGCACCCTTTAGTCCTCAAAGAGCAAGATGCCTTTTTCCTTTCAAAGCCCACAC-AGTT
* * * *
1449608 TGTGACACCCTTTAGTCCTCAAAGAGCAAGATGCCCTTTTCCTTTCAATGCCCACACGAGTTGGT
62 GGTGGCACCCTTTAGTCCTCAAAGAGCAAGATGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGT
1449673 GGCA-CC---A-T--T-------CA-G-T--C----TCCTTTCAAAGCCCACACAAGTTGGTGGC
127 GGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTTTCCTTTCAAAGCCCACACAAGTTGGTGGC
* * * **
1449716 ACCCTTTAGTCCTCAAAAAGCAGGATGCCTTTTTCATTTCAAAGCTCACACGAGTTCATGGCACC
192 ACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTTTCTTTTCAAAGCCCACACGAGTTGGTGGCACC
* * * * * * *
1449781 CTTTAGTCCTTAAA-ATGCAGGATGCCTTTTTCGTTTAAAAACCCACATTG-GTTGGTGG-TCCA
257 CTTTAGTCCTCAAAGA-GCAGGATGCCTTTTTCCTTTCAAAGCCCACA-CGAGTTGGTGGCACCC
* **
1449843 TTTTGTCCTCAAAGAGCAGGACACCTTTTTCTTTTCAAAGCCCGCACA
320 TTTAGTCCTCAAAGAGCAGGATGCC----T-TTTT--------G---A
* ** * *
1449891 TGTTGTTGGCACCCTTTAGTCCTCAAAGAGCAAGACGTATTTTTCTTTTCAAAGCCCACAGAAGT
1 ---TG-TGGCACCCTTTAGTCCTCAAAGAGCAAGATGCCTTTTTCCTTTCAAAGCCCACA-CAGT
* * * * * * *
1449956 TGATGGGACCCTTTAGTCCTCAAATAGCAGGATGCCTTTTTTCTTTCGAAGCCCGCACGAGTTGG
61 TGGTGGCACCCTTTAGTCCTCAAAGAGCAAGATGCCTTTTTCCTTTCAAAGCCCACACGAGTTGG
* * * * *
1450021 TGGCACCCTTCAGTCCTCAAAAAGCAGGATGCCTTTTTCCTTTCAAAGCCCACACGAGTTAGTGT
126 TGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTTTCCTTTCAAAGCCCACACAAGTTGGTGG
*
1450086 CACCCTTTAGTCCTCAAAAAGCAGGATGCC----T-TTTT------------GA----GTGGCAC
191 CACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTTTCTTTTCAAAGCCCACACGAGTTGGTGGCAC
** *
1450130 CCTTTAGTCCGGAAAGAGCAAGATGCCTTTTTCCTTTCAAAGCCCACAC-AGTTGGTGGCACCCT
256 CCTTTAGTCCTCAAAGAGCAGGATGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCT
* * *
1450194 TTAATCCTCAAAGAGCAAGACGTATTTTTCCTTTCAAAGCCCATAGAA
321 TTAGTCCTCAAAGAGC-AG--G-A---TGCCTTT---------TTG-A
* * * *
1450242 GTTGGTGGTACCCTTTAGTTCTCAAAGAG-AAGGATGCCTTTTTCCTTTCAAAGCCCGCACGAAT
1 --T-GTGGCACCCTTTAGTCCTCAAAGAGCAA-GATGCCTTTTTCCTTTCAAAGCCCACAC-AGT
* * ** *
1450306 TGGTGGCACTCTTTAGTCCTCAAAAAGCTGGATGCCTTTTTCCTTTCAAAGCCCACACGAATTGG
61 TGGTGGCACCCTTTAGTCCTCAAAGAGCAAGATGCCTTTTTCCTTTCAAAGCCCACACGAGTTGG
*
1450371 TGGCACCCTTTAGTCCTCAAAGAGCAGCATGCC---TT--TTT------------AA----GTGG
126 TGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTTTCCTTTCAAAGCCCACACAAGTTGGTGG
** *
1450415 CACCCTTTAGTCCTCAAAGAGCAGGCCGCCTTTTTCTTTTCAAAGCCCACACAAGTTGGTGGCAC
191 CACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTTTCTTTTCAAAGCCCACACGAGTTGGTGGCAC
* * * *
1450480 CCTTTAGTCCTCAAAAATCAGGATGCCTTTTTCCTTTCAAAGCCCACACAAGTTTGTGGCACCCT
256 CCTTTAGTCCTCAAAGAGCAGGATGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCT
* * * **
1450545 TTAGTCCTTAAAGAGCAAGATGTCTTTTTCC
321 TTAGTCCTCAAAGAGCAGGATGCCTTTTTGA
* * * ** * * ** ** * *
1450576 TTTCAGCGCCC-ACACGT-GT---TG-G-TGGAACCCTTCAGTCTCCTTTCAAAGCCAACACAAG
1 TGT-GGCACCCTTTA-GTCCTCAAAGAGCAAGATGCCTT---TTTCCTTTCAAAGCCCACAC-AG
* * * *
1450634 TTGGTGGCACCCTTCAGTCCTCAAAGAGCAGGATGCCTTTCTCCTTTCAAAGCCAACACGAGTTG
60 TTGGTGGCACCCTTTAGTCCTCAAAGAGCAAGATGCCTTTTTCCTTTCAAAGCCCACACGAGTTG
* * * * * * * **
1450699 GTGACAGCTTTTAGTCCTCAAAAAGCAGGTTGCCTTTTTCGTTTCAAA-CCTACACGGGTTGGTG
125 GTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTTTCCTTTCAAAGCCCACACAAGTTGGTG
* ** * * *
1450763 GC-CTCATTTTTTCCTCAAAGAGTAGGACT-CCTTTTTCTTTTCAAAGCCTACACGAGTTTGTGG
190 GCAC-CCTTTAGTCCTCAAAGAGCAGGA-TGCCTTTTTCTTTTCAAAGCCCACACGAGTTGGTGG
* * *
1450826 CACCCTTCAGTCCTCAAAAAGCAGGATGCCTTTTTCCTTTCAAAGCCCACACGAGTTAGTGGCAC
253 CACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCAC
*
1450891 CCTTTAGTCCTCAAAAAGCAGGATGCCTTTTTGA
318 CCTTTAGTCCTCAAAGAGCAGGATGCCTTTTTGA
**
1450925 -GTGGCACCCTTTAGTCCGGAAAGAGCAAGATGCCTTTTTCCTTTCAAAGCCCACACAGTTGGTG
1 TGTGGCACCCTTTAGTCCTCAAAGAGCAAGATGCCTTTTTCCTTTCAAAGCCCACACAGTTGGTG
* * ** * *
1450989 GCACCCTTTAATCCTCAAAGAGCAAGACGTATTTTTCCTTTCAAAGCCCATA-GAAGTTGGTGGT
66 GCACCCTTTAGTCCTCAAAGAGCAAGATGCCTTTTTCCTTTCAAAGCCCACACG-AGTTGGTGGC
* * *
1451053 ACCCTTTAGTTCTCAAAGAGAAGGATGCCTTTTTCCTTTCAAAGCCCGCACGAA-TTGGTGGCAC
130 ACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTTTCCTTTCAAAGCCCACAC-AAGTTGGTGGCAC
* * * * *
1451117 TCTTTAGTCCTCAAAAAGCTGGATGCCTTTTTCCTTTCAAAGCCCACACGAATTGGTGGCACCCT
194 CCTTTAGTCCTCAAAGAGCAGGATGCCTTTTTCTTTTCAAAGCCCACACGAGTTGGTGGCACCCT
* ** ** * * * * * **
1451182 TTAGTCCTCAAAGAGCAGCATGCCTTTTTAAGTGGCACCCTTTAGTCCTCA-AAG-AGCAGGC-C
259 TTAGTCCTCAAAGAGCAGGATGCCTTTTT-CCTTTCA-----AAGCCCACACGAGTTGGTGGCAC
* * ** * ***
1451244 GCCTTT-TTCTTTTCAAAGCCCA-CA---CAAGTTG-
318 -CCTTTAGTC--CTCAAAGAGCAGGATGCCTTTTTGA
* * * *
1451275 -GTGGCACCCTTTAGTCCTCAAAAATCAGGATGCCTTTTTCCTTTCAAAGCCCACACAAGTTTGT
1 TGTGGCACCCTTTAGTCCTCAAAGAGCAAGATGCCTTTTTCCTTTCAAAGCCCACAC-AGTTGGT
* * ** * *
1451339 GGCACCCTTTAGTCCTTAAAGAGCAAGATGTCTTTTTCCTTTCAGTGCCCACACGTGTTGGTGGA
65 GGCACCCTTTAGTCCTCAAAGAGCAAGATGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGC
* *
1451404 ACCC-----T--T-------CA-G-T--C----TCCTTTCAAAGCCAACATAAGTTGGTGGCACC
130 ACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTTTCCTTTCAAAGCCCACACAAGTTGGTGGCACC
* * * * * * *
1451447 CTTCAGTCCTCAAAGAGCAGGATGCCTTTCTCCTTTCAAAGCCAACACGAGTTGGTGACAGCTTT
195 CTTTAGTCCTCAAAGAGCAGGATGCCTTTTTCTTTTCAAAGCCCACACGAGTTGGTGGCACCCTT
* * * * * * *
1451512 TAGTCCTCAAAAAGCAGGTTGCCTTTTTCGTTTCAAA-CCTACACGGGTTGGTGGC-CTCATTTT
260 TAGTCCTCAAAGAGCAGGATGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCAC-CCTTTA
* * *
1451575 TTCCTCAAAGAGTAGGACTCCTTTTTCTTTTCAAAGCCTACACGA
324 GTCCTCAAAGAGCAGGA-TGC-----CTTTT-------T----GA
* * * *
1451620 GTTTGTGGCACCCTTTAGTTCTGAAAGAGCAGGATGCCTTTTTCTTTTCAAAGCCCACACGAGTT
1 ---TGTGGCACCCTTTAGTCCTCAAAGAGCAAGATGCCTTTTTCCTTTCAAAGCCCACAC-AGTT
* * * *
1451685 TGTGACACCCTTTAGTCCTCAAAGAGCAAGATGCCCTTTTCCTTTCAATGCCCACACGAGTTGGT
62 GGTGGCACCCTTTAGTCCTCAAAGAGCAAGATGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGT
1451750 GGCA-CC---A-T--T-------CA-G-T--C----TCCTTTCAAAGCCCACACAAGTTGGTGGC
127 GGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTTTCCTTTCAAAGCCCACACAAGTTGGTGGC
* * **
1451793 ACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTTTCATTTCAAAGCTCACACGAGTTCATGGCACC
192 ACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTTTCTTTTCAAAGCCCACACGAGTTGGTGGCACC
* * * * * * *
1451858 CTTTAGTCCTTAAA-ATGCAGGATGCCTTTTTCGTTTAAAAACCCACATTG-GTTGGTGG-TCCA
257 CTTTAGTCCTCAAAGA-GCAGGATGCCTTTTTCCTTTCAAAGCCCACA-CGAGTTGGTGGCACCC
* * **
1451920 TTTTGTCTTCAAAGAGCAGGACACCTTTTTCTTTTTAAAGCCCGCACA
320 TTTAGTCCTCAAAGAGCAGG--A----TGCCTTTTT-------G---A
* ** * *
1451968 TGTTGTTGGCACCCTTTAGTCCTCAAAGAGCAAGACGTATTTTTCTTTTCAAAGCCCACAGAAGT
1 ---TG-TGGCACCCTTTAGTCCTCAAAGAGCAAGATGCCTTTTTCCTTTCAAAGCCCACA-CAGT
* * * * * *
1452033 TGATGGGACCCTTTAGTCCTCAAATAGCAGGATGCCTTTTTCCTTTCGAAGCCCGCACGAGTTGG
61 TGGTGGCACCCTTTAGTCCTCAAAGAGCAAGATGCCTTTTTCCTTTCAAAGCCCACACGAGTTGG
* * * *
1452098 TGGCACCCTTCAGTCCTCAAAAAGCAGGATGCCTTTTTCCTTTCAAAGCCCACACGAGTTAGTGG
126 TGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTTTCCTTTCAAAGCCCACACAAGTTGGTGG
*
1452163 CACCCTTTAGTCCTCAAAGAGCAGCATGCC----T-TTTT----------A--A----GTGGCAC
191 CACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTTTCTTTTCAAAGCCCACACGAGTTGGTGGCAC
* * * * *
1452207 CCTTTAGTCCTCAAAGAGCAAGACGCTTTTTTCCTTTCAAAGCCCACAGGAGTTGGTGGCACCTT
256 CCTTTAGTCCTCAAAGAGCAGGATGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCT
* * *
1452272 TTAGTCCTCAAAGAGTAGGACGCATTTTTCTTTTCAAAGCTCATACAAGT
321 TTAGTCCTCAAAGAGCAGGATGC------C-TTT------T--T----GA
* * *
1452322 TGGTGGCACCCTTTAGTCCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTTG
1 T-GTGGCACCCTTTAGTCCTCAAAGAGCAAGATGCCTTTTTCCTTTCAAAGCCCACAC-AGTTGG
*
1452387 TGGCACCCTTTAGTCCTCAAAGAGCAAGATGCCTTTTTCCTTTCAACGCCCACACGAGTTGGTGG
64 TGGCACCCTTTAGTCCTCAAAGAGCAAGATGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGG
1452452 CACCCTTTAGTCTCCTTTCAAAACCCACACAAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGG
129 CACCCTTTAG--TCC--T-----------CAA---------A----------------GAGCAGG
* * * * * * * *
1452517 ATGCCTTTTTCCTTTCTAAGCCCACACGAGTTCGTGGCACCATTTAGTCCTTAAAAAGAAGGATT
154 ATGCCTTTTTCCTTTCAAAGCCCACACAAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATG
* * * * * * *
1452582 CCTTTTTCATTTCAAAACTCACACGAGTTGGTGG-TCCATTTTGTCCTCAAAGAGCAGGACAG-C
219 CCTTTTTCTTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGA-TGCC
* * * * * * **
1452645 TTTTTCTTTTCAAAGCCCATATGTGTAGTTGGTGCCCTTTAGTCCTCAAAGAGCAAGAAGTATTT
283 TTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGTCCTCAAAGAGC-AG--G-A---
* *
1452710 TTCCTTTCAAAGCCCATAGAA
341 TGCCTTT---------TTG-A
* * *
1452731 GTTGGTGGCACCCTTTAATCCTCAAAGAGCAGGATGCCTTTTTCCTTTCAAAGCCCGCACGAGTT
1 --T-GTGGCACCCTTTAGTCCTCAAAGAGCAAGATGCCTTTTTCCTTTCAAAGCCCACAC-AGTT
* *
1452796 TGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCC---TT--TTT----G-----AC-------T
62 GGTGGCACCCTTTAGTCCTCAAAGAGCAAGATGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGT
* * * * * *
1452840 GGCACCCGTTAGTCATCAAAGAGCAAGACGCCTTTTTCCTTTCAAAGCCCACAC-AGTTTGTGGA
127 GGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTTTCCTTTCAAAGCCCACACAAGTTGGTGGC
* * ** * * *
1452904 ACCCTTTAGTCCTCTAAGAGCAAGACACCTTTTTCATTTCAAAGCCTACACGAGTTTGTGGCACC
192 ACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTTTCTTTTCAAAGCCCACACGAGTTGGTGGCACC
* * * * *
1452969 CTTTAGTTCTGAAAGAGCAGGATGCCTTTTTCTTTTCAAAGCCCACACGAGTTTGTGACACCCTT
257 CTTTAGTCCTCAAAGAGCAGGATGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTT
* * * **
1453034 TAGTCTTCAAAGAGCAAGATGCCCTTTTCC
322 TAGTCCTCAAAGAGCAGGATGCCTTTTTGA
* * * ** * *
1453064 T-T-TCA----AT-G-CC-CACACGAG-TTGGTGGCACCCTTCAGTCTCCTTTCAAAGCCCACAC
1 TGTGGCACCCTTTAGTCCTCA-AAGAGCAAGAT-G---CCTT---TTTCCTTTCAAAGCCCACAC
* *
1453119 AAGTTGGTGGCACCCTTTAGTCCTCAAAGAG-AAGGATGCCTTTTTCCTTTCTAAGCCCACACGC
58 -AGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAA-GATGCCTTTTTCCTTTCAAAGCCCACACGA
* * * * * * * * *
1453183 GTTCGTGGCTCCATTTAGTCCTTAAAAAGCAGGATTCCTTTTTCATTTCAAAACCCACACGAGTT
121 GTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTTTCCTTTCAAAGCCCACACAAGTT
* * * ** * * *
1453248 GGTGG-TCCATTTTGTCCTCAAAGAGCAGGACACCTTTTTCTTTTCAAAGCCCACAGGTGTTGTT
186 GGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTTTCTTTTCAAAGCCCACACGAGTTGGT
* * * ** *
1453312 GGTACCCTTTAGTCCTCAAAGAGCAAGACGTATTTTTCCTTTCAAAGCCCATA-GAAGTTGGTGG
251 GGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTTTCCTTTCAAAGCCCACACG-AGTTGGTGG
* *
1453376 CACCCTTTAGTCCTAAAAGAGAAGGATGCCTTTTTCCTTTCAAAGCCCGCACGA
315 CACCCTTTAGTCCTCAAAGAGCAGGATGCC---TT--TTT------------GA
* * *
1453430 GTTGGTGGCACCCTTTAGTCCTCAAAAAGCAGGATGCCTTTCTCCTTTCAAAGCCCACACGAGTT
1 --T-GTGGCACCCTTTAGTCCTCAAAGAGCAAGATGCCTTTTTCCTTTCAAAGCCCACAC-AGTT
**
1453495 GGTGGCACCCTTTAGTCCTCAAAGAGCATCATGCC---TT--TTT----G-----A--A-----T
62 GGTGGCACCCTTTAGTCCTCAAAGAGCAAGATGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGT
* * * *
1453539 GGCACCCTCTAGTCCTCAAAGAGCAAGACGCTTTTTTCCTTTCAAAGCCCACAC-AGTTGGTGGC
127 GGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTTTCCTTTCAAAGCCCACACAAGTTGGTGGC
* ** * * *
1453603 ACCCTTTAGTCCTCAAAGAGCAAGACACCTTTTTCATTTCAAAGCCTACACGAGTTGTTGGCACC
192 ACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTTTCTTTTCAAAGCCCACACGAGTTGGTGGCACC
* * * * *
1453668 CTTTAGTCCTCGAAGAGTAGGACGCCTTTTTCCTTTCAAAGCTCACACAAGTTGGTGGCACCCTT
257 CTTTAGTCCTCAAAGAGCAGGATGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTT
1453733 TAGTCCTCAAAGAGCAGGATGCCTATTTCATTTCAAAGCCCACACGA
322 TAGTCCTCAAAGAGCAGGATGCC---TT--TTT------------GA
* * * * * * * **
1453780 GTTCGTGGCACCCTTTAGTCCTTAAAAACCAGGATGCCTTTTTCGTTTAAAAACCCACATGGGTT
1 --T-GTGGCACCCTTTAGTCCTCAAAGAGCAAGATGCCTTTTTCCTTTCAAAGCCCACA-CAGTT
* * * * ** * * *
1453845 GGTGG-TCCATTTTGTCCTCAAAGAGCAGGACACCTTTTTCTTTTCAAAGCCCACACGTGTTGTT
62 GGTGGCACCCTTTAGTCCTCAAAGAGCAAGATGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGT
* * * ** * *
1453909 GGTACCCTTTAGTCCTCAAAGAGCAAGACGTATTTTTCCTTTCAAAGCCCATAGAAGTTGGTGGC
127 GGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTTTCCTTTCAAAGCCCACACAAGTTGGTGGC
* * *
1453974 ACCCTTTAGTCCTCAAAGAGAAGGATGCCTTTTTCCTTTCAAAGCCCGCACGAGTTGGTGGCACC
192 ACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTTTCTTTTCAAAGCCCACACGAGTTGGTGGCACC
*
1454039 CTTTAGTCCTCAAAAAGCAGGATGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTT
257 CTTTAGTCCTCAAAGAGCAGGATGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTT
*
1454104 TAGTCCTCAAAGAGCAGCATGCCTTTTT-A
322 TAGTCCTCAAAGAGCAGGATGCCTTTTTGA
* * *
1454133 AGTGGCACCCTTTAGTCCTCAAAGAGCAAGACGCCTTTTTCCTTTCGAAGCCCACACAGTTGGTG
1 TGTGGCACCCTTTAGTCCTCAAAGAGCAAGATGCCTTTTTCCTTTCAAAGCCCACACAGTTGGTG
** * * * *
1454198 GCACCCTTTAGTCCTCAAAGAGCAAGACACCTTTTTCATTTCAAAGCCTACACGAGTTGTTGCCA
66 GCACCCTTTAGTCCTCAAAGAGCAAGATGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCA
* * ** *
1454263 CCCTTTAGTCCTCGAAGAGTAGGACACCTTTTTCCTTTCAAAGCTCACACAAGTTGGTGGCACCC
131 CCCTTTAGTCCTCAAAGAGCAGGATGCCTTTTTCCTTTCAAAGCCCACACAAGTTGGTGGCACCC
* * *
1454328 TTTAGTCCTCAAAGAGCAGGATGCCTATTTCATTTCAAAGCCCACACGAGTTCGTGGCACCCTTT
196 TTTAGTCCTCAAAGAGCAGGATGCCTTTTTCTTTTCAAAGCCCACACGAGTTGGTGGCACCCTTT
* * * * * * * * * *
1454393 AGTCCTTGAAA-ACCAGGATGCCTTTTTCGTTTAAAATCCCACATGGGTTGGTGG-TCCATTTTG
261 AGTCC-TCAAAGAGCAGGATGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAG
* **
1454456 TCCTCAAACAGCAGGACACCTTTTTCTTTTCAAAGCCCACA
325 TCCTCAAAGAGCAGGATGCC----T-TTTT----G-----A
* * ** * *
1454497 CGTGTTGTTGGTACCCTTTAGTCCTCAAAGAGCAAGACGTATTTTTCCTTTCAAAGCCCATAGAA
1 -----TG-TGGCACCCTTTAGTCCTCAAAGAGCAAGATGCCTTTTTCCTTTCAAAGCCCACA-CA
*
1454562 GTTGGTGGCACCCTTTAGTCCTCAAAGAG-AAGGATGCCTTTTTCCTTTCAAAGCCCGCACGAGT
59 GTTGGTGGCACCCTTTAGTCCTCAAAGAGCAA-GATGCCTTTTTCCTTTCAAAGCCCACACGAGT
* *
1454626 TGGTGGCACCCTTTAGTCCTCAAAAAGCAGGATGCCTTTTTCCTTTCAAAGCCCACACGAGTTGG
123 TGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTTTCCTTTCAAAGCCCACACAAGTTGG
*
1454691 TGGCACCCTTTAGTCCTCAAAGAGCAGCATGCCTTTTTAAGTGGCACCCTTTAGCCCTCAAAGAG
188 TGGCACCCTTTAGTCCTCAAAGAGCAGGATGCC-TTTT---T------CTTT-----TC-AA-AG
** *** ** * * * ** *
1454756 CAAGACACCTTTTTCCTTTCGAAGCCCACACAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAAG
236 C-CCACA-CGAGTT--GGT-G--G--CAC-C-CTT--TAG--TCCTCA--------AAGAGCAGG
** * * * * ** * **
1454821 ACACCTTTTTCATTTCAAAGCCTACACGAGTTGCTGGCACCCTTTAGTCATTGAAGAGTAGGACA
278 ATGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATG
1454886 CCTTTTTCCTTTCAAAGCCCACACGA
343 CC---TT--TTT------------GA
* * *
1454912 GTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGCTGCCTTTTTCTTTTCAAAGCCCACACAAGTT
1 --T-GTGGCACCCTTTAGTCCTCAAAGAGCAAGATGCCTTTTTCCTTTCAAAGCCCACAC-AGTT
* * * * *
1454977 GGTGGCACCCTTTAGTCCTCAAAAATCAGGATGCCTTTTTCCTTTCAAAGCCCACACAAGTTTGT
62 GGTGGCACCCTTTAGTCCTCAAAGAGCAAGATGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGT
* * ** **
1455042 GGCACCCTTTAGTCCTTAAAGAGCAAGATGCCTTTTTCCTTTCAGCGCCCACACGTGTTGGTGGC
127 GGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTTTCCTTTCAAAGCCCACACAAGTTGGTGGC
*
1455107 ACCCTTCAGTCTCCTTTCAAAGCCCACACAAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGA
192 ACCCTTTAG--TCC--T-----------CAA---------A----------------GAGCAGGA
* * * * * * * *
1455172 TGCCTTTTTCCTTTCTAAGCCCACACGAGTTCGTGGCACCATTTAGTCCTTAAAAAGCAAGATTC
217 TGCCTTTTTCTTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGC
* * * * * * **
1455237 CTTTTTCATTTCAAAACCCACACGAGATGGTGG-TCCATTTTGTCCTCAAAGAGCAGGACACCTT
282 CTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCC--
1455301 TTTCTTTTCAAAGCCCATA
345 --T-TTTT----G-----A
* * ** * *
1455320 CGTGTAGTTGGTACCCTTTAGTCCTCAAAGAGCAAGACGTATTTTTCTTTTCAAAGCCCACAGAA
1 ----T-G-TGGCACCCTTTAGTCCTCAAAGAGCAAGATGCCTTTTTCCTTTCAAAGCCCACA-CA
* * * * * * *
1455385 GTTGATGGGACCCTTTAGTCCTCAAATAACAGGATGCCTTTTTCCTTTCGAAGCCCGCACGAGTT
59 GTTGGTGGCACCCTTTAGTCCTCAAAGAGCAAGATGCCTTTTTCCTTTCAAAGCCCACACGAGTT
* * * * *
1455450 GGTGGCACCCTTCAATCCTCAAAAAGCAGGATGCCTTTTTCCTTTCAAAGCCCACACGAGTTAGT
124 GGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTTTCCTTTCAAAGCCCACACAAGTTGGT
1455515 GGCACCCTTTAGTCCTCAAAGAGCAGGATGCC----T-TTTT------------GA----GTGGC
189 GGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTTTCTTTTCAAAGCCCACACGAGTTGGTGGC
** * *
1455559 ACCCTTTAGTCCGGAAAGAGCAAGATGCCTTTTTCCTTTCAAAGCCCACTC-AGTTGGTGGCACC
254 ACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACC
* * * *
1455623 CTTTAATCCTCAAAGAGCAAGACACCTTTTTCCTTTCAAAGCCTACACGA
319 CTTTAGTCCTCAAAGAGC-AG-GA-----TGCCTTT-------T---TGA
* * *
1455673 GTTGCTGGCACTCTTTAGTCCTCGAAGAGCAGGATGCCTTTTTCCTTTCAAAGCCCACACGAGTT
1 --TG-TGGCACCCTTTAGTCCTCAAAGAGCAAGATGCCTTTTTCCTTTCAAAGCCCACAC-AGTT
* * * * * * * *
1455738 GGTGGCACCTTTTAGTCCTCAAAGAGTAGGACGCCTTTTTCTTTTCAAAGCTCATACAAGTTGGT
62 GGTGGCACCCTTTAGTCCTCAAAGAGCAAGATGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGT
* * *
1455803 GGCACCCTTTAGTCCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTTGTGGC
127 GGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTTTCCTTTCAAAGCCCACACAAGTTGGTGGC
* * * * *
1455868 ACCCTTTAGTCCTCAAAGAGCAAGATGCCTTTTTCCTTTCAACGCCCACTCGAGTTGATGGCACC
192 ACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTTTCTTTTCAAAGCCCACACGAGTTGGTGGCACC
1455933 CTTTAGTCTCCTTTCAAAACCCACACAAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGC
257 CTTTAG--TCC--T-----------CAA---------A----------------GAGCAGGATGC
* * * * * * *
1455998 CTTTTTCCTTTCTAAGCCCACACGAGTTCGTGGCACCATTTAGTCCTTAAAAAGCAAGATTCCTT
282 CTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCC--
1456063 TTTCATTTCAAAACCCACACGAGA
345 -TT--TTT--------------GA
* * * * ** * *
1456087 TGGTGG-TCCATTTTGTCCTCAAAGAGCAGGACACCTTTTTCTTTTCAAAGCCCATAC-GTGTAG
1 T-GTGGCACCCTTTAGTCCTCAAAGAGCAAGATGCCTTTTTCCTTTCAAAGCCCACACAGT-T-G
* * * ** *
1456150 TTGGTACCCTTTAGTCCTCAAAGAGCAAGAAGTATTTTTCCTTTCAAAGCCCATA-GAAGTTGGT
63 GTGGCACCCTTTAGTCCTCAAAGAGCAAGATGCCTTTTTCCTTTCAAAGCCCACACG-AGTTGGT
* *
1456214 GGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTTTCCTTTCAAAGCCCGCACGAGTTGGTGGC
127 GGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTTTCCTTTCAAAGCCCACACAAGTTGGTGGC
* * *
1456279 ACCCCTTAGTCCTCAAAAAGCAGGATGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCA-C
192 ACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTTTCTTTTCAAAGCCCACACGAGTTGGTGGCACC
*
1456343 C---A-T--T-------CA-G-T--C----TCCTTTCAAAGCCCACACAAGTTGGTGGCACCCTT
257 CTTTAGTCCTCAAAGAGCAGGATGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTT
1456387 TAGTCCTCAAAGAGCAGGATGCCTTTTTCATTTCAAAGCTCACACGA
322 TAGTCCTCAAAGAGCAGGATGCC----T--TTT------T-----GA
* * * * * * * **
1456434 GTTCATGGCACCCTTTAGTCCTTAAAAAGCAGGATGCCTTTTTCGTTTAAAAACCCACATTGGTT
1 --T-GTGGCACCCTTTAGTCCTCAAAGAGCAAGATGCCTTTTTCCTTTCAAAGCCCACA-CAGTT
* * * * * * *
1456499 GGTGG-TCCATTTTGTCCTCAAAGAGCAGGA--CTCTTTTTCTTTTCAAAACCCGCAC-ATGTTG
62 GGTGGCACCCTTTAGTCCTCAAAGAGCAAGATGC-CTTTTTCCTTTCAAAGCCCACACGA-GTTG
* * * ** * * *
1456560 TTGGCACCCTTTAGTCCTCAAAGAGCAAGACGTATTTTTCTTTTCAAAGCCCACAGAAGTTGATG
125 GTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTTTCCTTTCAAAGCCCACACAAGTTGGTG
* * * * *
1456625 GGACCCTTTAGTCCTCAAATAGCAGGATGCCTTTTTCCTTTCGAAGCCCGCACGAGTTGGTGGCA
190 GCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTTTCTTTTCAAAGCCCACACGAGTTGGTGGCA
* * * *
1456690 CCCTTCAATCCTCAAAAAGCAGGATGCCTTTTTCCTTTCAAAGCCCACACGAGTTAGTGGCACCC
255 CCCTTTAGTCCTCAAAGAGCAGGATGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCC
1456755 TTTAGTCCTCAAAGAGCAGGATGCCTTTTTGA
320 TTTAGTCCTCAAAGAGCAGGATGCCTTTTTGA
**
1456787 -GTGGCACCCTTTAGTCCGGAAAGAGCAAGATGCCTTTTTCCTTTCAAAGCCCACACAGTTGGTG
1 TGTGGCACCCTTTAGTCCTCAAAGAGCAAGATGCCTTTTTCCTTTCAAAGCCCACACAGTTGGTG
* ** * *
1456851 GCACCCTTTAATCCTCAAAGAGCAAGACACCTTTTTCCTTTCAAAGCCTACACGAGTTGCTGGCA
66 GCACCCTTTAGTCCTCAAAGAGCAAGATGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCA
* * * *
1456916 CTCTTTAGTCCTCGAAGAGCAGGATGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCT
131 CCCTTTAGTCCTCAAAGAGCAGGATGCCTTTTTCCTTTCAAAGCCCACACAAGTTGGTGGCACCC
* * * * *
1456981 TTTAGTCCTCAAAGAGTAGGACGCCTTTTTCTTTTCAAAGCTCATACAAGTTGGTGGCACCCTTT
196 TTTAGTCCTCAAAGAGCAGGATGCCTTTTTCTTTTCAAAGCCCACACGAGTTGGTGGCACCCTTT
* * *
1457046 AGTCCTCATAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTTGTGGCACCCTTTAGT
261 AGTCCTCAAAGAGCAGGATGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGT
* **
1457111 CCTCAAAGAGCAAGATGCCTTTTTCC
326 CCTCAAAGAGCAGGATGCCTTTTTGA
* * * ** *
1457137 T-T-TCA-AC----G-CC-CACATGAG-TTGATGGCACCCTTTAGTCTCCTTTCAAAACCCACAC
1 TGTGGCACCCTTTAGTCCTCA-AAGAGCAAGAT-G---CCTTT--T-TCCTTTCAAAGCCCACAC
* *
1457192 AAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTTTCCTTTCTAAGCCCACACGAG
58 -AGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAAGATGCCTTTTTCCTTTCAAAGCCCACACGAG
* * * * * * * *
1457257 TTCGTGGCACCATTTAGTCCTTAAAAAGCAGGATTCCTTTTTCATTTCAAAACCCACACGAGTTG
122 TTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTTTCCTTTCAAAGCCCACACAAGTTG
* * * * ** * * * *
1457322 GTGG-TCCATTTTGTCCTCAAAGAGCAAGACACCTTTTTCTTTTCAAAGCCCATACGTGTAGTTG
187 GTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTTTCTTTTCAAAGCCCACACGAGTTGGTG
* * * ** *
1457386 GTACCCTTTAGTCCTCAAAGAGCAAGAAGTATTTTTCCTTTCAAAGCCCATA-GAAGTTGGTGGC
252 GCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTTTCCTTTCAAAGCCCACACG-AGTTGGTGGC
1457450 ACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTTTCCTTTCAAAGCCCGCACGA
316 ACCCTTTAGTCCTCAAAGAGCAGGATGCC---TT--TTT------------GA
* *
1457503 GTTGGTGGCACCCTTTAGTCCTCAAAAAGCAGGATGCCTTTTTCCTTTCAAAGCCCACACGAGTT
1 --T-GTGGCACCCTTTAGTCCTCAAAGAGCAAGATGCCTTTTTCCTTTCAAAGCCCACAC-AGTT
* * * * * * * * *
1457568 GGTGGAACCTTTTAGTCCTCAAAGAGTAGGACGCCTTTTTCTTTTCAAAGCTCATACAAGTTGGT
62 GGTGGCACCCTTTAGTCCTCAAAGAGCAAGATGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGT
* * *
1457633 GGCACCCTTTAGTCCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTTGTGGC
127 GGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTTTCCTTTCAAAGCCCACACAAGTTGGTGGC
* * * * *
1457698 ACCCTTTAGTCCTTAAAAAGCAAGATGCCTTTTTCCTTTCAACGCCCACACGAGTTGGTGGCACC
192 ACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTTTCTTTTCAAAGCCCACACGAGTTGGTGGCACC
*
1457763 CTTCAGTCTCCTTTCAAAGCCCACACAAGTTGGTGGCACCCTTTATTTTTCAAAGAGCCGGATGC
257 CTTTAG--TCC--TCAAAG--------A-------G--------------C----A---GGATGC
* * * *
1457828 CTTTTTCCTTTCAAAGCCCACACGAGTTGGTGACACCTTTTAGTCCTCAAAAAGTAGGATGCCTT
282 CTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTT
1457893 TTTCGTTTCAAA
347 TTT-G------A
* * * * * * *
1457905 CCTACACGGGTTAGTAGCCTCATTTTGTCCTCAAAGAGTAGGACT-CCCTTTTCTTTTCAAAGCC
1 --T------G-TGGCA-CC-C-TTTAGTCCTCAAAGAGCAAGA-TGCCTTTTTCCTTTCAAAGCC
* * * * * ** * * *
1457969 CACACTTGTTGGCGGCACCCTTTAGTCCTCAATGAGTAGGACCCCTTTTTCTTTTCAACGCCTAC
53 CACAC-AGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAAGATGCCTTTTTCCTTTCAAAGCCCAC
* * * * * *
1458034 A-TAGGTTTGTGGCACCATTTAGTTCTGAAAGAGCAGGATGCCTTTTTCCTTTCAAAGCCCACAT
117 ACGA-GTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTTTCCTTTCAAAGCCCACAC
* * * * * * * *
1458098 GAGTTTGTGGCACCCTTTAGCCCACAAAGAGCAAGACGCCTTTTTCCTTTCAACGCCCACACGAG
181 AAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTTTCTTTTCAAAGCCCACACGAG
*
1458163 TTGGTGGCACCCTTCAGTCTCCTTTCAAAGCCCACACAAGTTGGTGGCACCTTTTAGTCTTCAAA
246 TTGGTGGCACCCTTTAG--TCC--T-----------C-A---------A---------------A
* * * * * *
1458228 GAGCAGGATGCCTTTCTCCTTTCAAAGCCAACACGAGTTGGTGACATCTTTTAGTCCTCAAAAAG
271 GAGCAGGATGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGTCCTCAAAGAG
*
1458293 CAGGTTGCCTTTTTCGTTTCAGA
336 CAGGATGCC---TT--TTT--GA
** ** * * * *
1458316 CCTACACGGGTTGGTGGCCTCATTTTTTCCTCAAAGAGTAGGACT-CCTTTTTCTTTTTAAAGCC
1 --T------G-TGG-CACC-C-TTTAGTCCTCAAAGAGCAAGA-TGCCTTTTTCCTTTCAAAGCC
* * * * * ** * *
1458380 TACACTTGTTGGCGGCACCCTTTAGTCCTCAATGAGCAGGACCCCTTTTTCTTTTCAAAGCCTAC
53 CACAC-AGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAAGATGCCTTTTTCCTTTCAAAGCCCAC
* * * * * *
1458445 TCGAGTTTGTGGCACCCTTTAGTTCTGAAAGAGGAGGATGCCTTTTTCCTTTCAAAGCCCACACG
117 ACGAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTTTCCTTTCAAAGCCCACACA
* * * * * *
1458510 AGTTTGTGGCACCCTTTAGTCCTCAAAGAGCATGATGCCCTTTTCCTTTCAATGCCCACACGTGT
182 AGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTTTCTTTTCAAAGCCCACACGAGT
* * * *
1458575 TGGTGGCACCATTCAGTCTCATTTCAAAGCCCACACAAGTTGGTGGCACCCTTTTGTCCTCAAAG
247 TGGTGGCACCCTTTAGTC-C---TCAAAG---A-GC-AG--GAT-G---CC--TT-T--T-----
** * * *
1458640 AGCAGGATACCTTTTTCATTCAAAGCCCACACGAGTTCATGGCACCCTTTAGACCTTAAAAAGCA
287 -------T-CC----T--TTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCA
*
1458705 AGATGCCTTTTTCGTTTAAAAACCCACA
338 GGATGCCTTTTT-G-------------A
** * * * *
1458733 TGGGTTGGTGGTCCATTTTGTCCTCAAAGAGCAGGA-GACCTTTTTCTTTTCAAAGCCCACACAT
1 T--G-T-G-GCACCCTTTAGTCCTCAAAGAGCAAGATG-CCTTTTTCCTTTCAAAGCCCACACA-
* * ** *
1458797 GTTGTTGGCACCCTTTAGTCCTCAAAGAGCAAGACGTATTTTTCTTTTCAAAGCCCACA-GAAGT
59 GTTGGTGGCACCCTTTAGTCCTCAAAGAGCAAGATGCCTTTTTCCTTTCAAAGCCCACACG-AGT
* * * * *
1458861 TGATGGCACCCTTGAGTCCTCAAAGAGCAGTG-TGCCTTTTTCCTTTTAAAGCCCGCACGAGTTG
123 TGGTGGCACCCTTTAGTCCTCAAAGAGCAG-GATGCCTTTTTCCTTTCAAAGCCCACACAAGTTG
* * *
1458925 GTGGCACCCTTCAGTCCTCAAAAAGCAGGATGCCTTTTTCCTTTT-AAAGCCCACACGAGTTAGT
187 GTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTTT-CTTTTCAAAGCCCACACGAGTTGGT
* ** ** ***
1458989 GGCACCCTTTAGTCCTCAAAGAGTAGGATGCCTTTTTGAGTGGC--A-CCCTTTAGTC-CGAAAA
251 GGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTTT-CCTTTCAAAGCCC---A--CACGAGTT
** * * **
1459050 GAGCAAG-ACGCCTTT-TTCCTTTCAAAGAGCA-CA---C-AGTTG-
310 G-G-TGGCAC-CCTTTAGTCC--TCAAAGAGCAGGATGCCTTTTTGA
* * ** * *
1459089 T-TGGCAGCCTTTAATCCTCAAAGAGCAAGACACCTTTTTCCTTTCAAAGCCTACACGAGTTGCT
1 TGTGGCACCCTTTAGTCCTCAAAGAGCAAGATGCCTTTTTCCTTTCAAAGCCCACAC-AGTTGGT
* * *
1459153 GGCACCCTTTAGTCCTCGAAGAGCAGGATGCCTTTTTCCTTTCAAAGCCTACACGAGTTGGTGGC
65 GGCACCCTTTAGTCCTCAAAGAGCAAGATGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGC
* * * *
1459218 ACCTTTTAGTCCTCAAAGAGCAGGATGCCTTTTTCTTTTCAAAGCTCATACAAGTTGGTGGCACC
130 ACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTTTCCTTTCAAAGCCCACACAAGTTGGTGGCACC
* * * * *
1459283 CTTTAGTCCTCATAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTTGTGCCACCCTT
195 CTTTAGTCCTCAAAGAGCAGGATGCCTTTTTCTTTTCAAAGCCCACACGAGTTGGTGGCACCCTT
* * * *
1459348 TAGTCCTTAAAGAGCAAGATGCCTTTTTCCTTTCAATGCCCACACGAGTTGGTGGCACCCTTCAG
260 TAGTCCTCAAAGAGCAGGATGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAG
** * ***
1459413 TCTTCTTTCAAAGCCCA-CA---CAAGTTG-
325 TC--C--TCAAAGAGCAGGATGCCTTTTTGA
* * * **
1459439 -GTGGCACCCTTTATTTCTCGAAGAGCCGGATGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGT
1 TGTGGCACCCTTTAGTCCTCAAAGAGCAAGATGCCTTTTTCCTTTCAAAGCCCACAC-AGTTGGT
* * * * * * * * * *
1459503 GACACCTTTTAGTCCTCAAAAAGTAGGATGCCTTTTTCGTTTCAAA-CCTACACGGGTCGGTAGC
65 GGCACCCTTTAGTCCTCAAAGAGCAAGATGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGC
* * * * ** *
1459567 -CTCATTTTGTCCTCAAAGAGTAGGACT-CCTTTTTCTTTTCAAAGCCCACACTTGTTGGCGGCA
130 AC-CCTTTAGTCCTCAAAGAGCAGGA-TGCCTTTTTCCTTTCAAAGCCCACACAAGTTGGTGGCA
* * *** * * * *
1459630 CCCTTTAGTCCTCAATGAGTAGGGCCCCTTTTTCTTTTCAACGCCTACA-TAGGTTTGTGGCACC
193 CCCTTTAGTCCTCAAAGAGCAGGATGCCTTTTTCTTTTCAAAGCCCACACGA-GTTGGTGGCACC
* * * *
1459694 ATTTAGTTCTGAAAGAGCAGGATGCCTTTTTCCTTTCAAAGCCCACACGAGTTTGTGGCACCCTT
257 CTTTAGTCCTCAAAGAGCAGGATGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTT
* **
1459759 TAGTCCTCAAAGAGCAAGATGCCTTTTTCC
322 TAGTCCTCAAAGAGCAGGATGCCTTTTTGA
* * * ** * *
1459789 T-T-TCA-AC----G-CC-CACACGAG-TTGGTGGCACCCTTCAGTCTCCTTTCAAAGCCCACAC
1 TGTGGCACCCTTTAGTCCTCA-AAGAGCAAGAT-G---CCTT---TTTCCTTTCAAAGCCCACAC
1459844 AAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAAGATGCCTTTTTCCTTTCAAAGCCCACACGAG
58 -AGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAAGATGCCTTTTTCCTTTCAAAGCCCACACGAG
* * * * * * **
1459909 TTGGTGACACCTTTTAGTTCTCAAAAAGCAGGATGCCTTTTTCGTTTCAAA-CCTACACGGGTTG
122 TTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTTTCCTTTCAAAGCCCACACAAGTTG
* * * * * ** *
1459973 GTGGC-CTCATTTTGTCCTCAAAGAGTAGGATTCCTTTTTCTTTTCAATGCCCACACTTGTTGGC
187 GTGGCAC-CCTTTAGTCCTCAAAGAGCAGGATGCCTTTTTCTTTTCAAAGCCCACACGAGTTGGT
* * * ** * *
1460037 AGCACCCTTTACTCCTCAATGAGCAGGACCCCTTTTTCTTTTCAAAGCCTACACGAGTTGGTGGC
251 GGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGC
*
1460102 ACCCTTCAGTCCTCAAAGAGCAGGATGCCTTTTTCCTTTCAAAGCCCGCACGA
316 ACCCTTTAGTCCTCAAAGAGCAGGATGCC---TT--TTT------------GA
* * *
1460155 GTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTTTCCTTTCAAAGCCCACACGGGTC
1 --T-GTGGCACCCTTTAGTCCTCAAAGAGCAAGATGCCTTTTTCCTTTCAAAGCCCACAC-AGTT
* * * * * * *** * * *
1460220 GGTGGCTCCCGTTAGCCCTTAAAAAGAAAGGCACCTTTTTCCTCTCAAAGCCCACATGAGTTGGC
62 GGTGGCACCCTTTAGTCCTCAAAGAGCAAGATGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGT
* * * ** * * * **
1460285 CGCACCCTTTAGCCCTCAAAGAGTAGGACACCTTTTTCTTTTCAAAGTCGACACGTGTTGGTGGC
127 GGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTTTCCTTTCAAAGCCCACACAAGTTGGTGGC
** * * * * *
1460350 TTCTTTTAGTCCTCAAAGAGAAGGATG-CTATTTTC-TTTCAATGCCCAAACGAGTTGGTGGCAT
192 ACCCTTTAGTCCTCAAAGAGCAGGATGCCT-TTTTCTTTTCAAAGCCCACACGAGTTGGTGGCAC
* * * * * * * ** *
1460413 TCTTTTGT-CTGGAAAAAGCCGGACG-CTTCTTATTTTTAAAGCCCACACGAGTTGGTGGCACCC
256 CCTTTAGTCCT-CAAAGAGCAGGATGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCC
1460476 TTTAGTCCTCAAAGTATG--GGATGCCTTTTTCCATTCAAAGCCCACACGA
320 TTTAGTCCTCAAAG-A-GCAGGATGCC--TTT---TT------------GA
* * * * *
1460525 GTTGGTGGCACTCTTTACTCCTCAAAGAGCCAGAAGCCTTTTTCTTTTCAAAGCCCACACAGGTT
1 --T-GTGGCACCCTTTAGTCCTCAAAGAGCAAGATGCCTTTTTCCTTTCAAAGCCCACACA-GTT
* * * * * ** * *
1460590 GGTGGTACCCTTTTGTTCTCAAAGAGTATGACACATTTTTCCTTTCAATGCCCACACGAGTTGGT
62 GGTGGCACCCTTTAGTCCTCAAAGAGCAAGATGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGT
* * * ** * **
1460655 GGCACTCTTTTGTCCTCAAAAAGCAGGACACCTTTTTCCTTTCAAAGCTCACACGGGTTGGTGGC
127 GGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTTTCCTTTCAAAGCCCACACAAGTTGGTGGC
* * * * * *
1460720 ACCCTTTAGTCCACAAAGAGCAGGACGCCTTTTTCTTTTCAGAG-CCAGATG-GATTGATGGCAC
192 ACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTTTCTTTTCAAAGCCCACACGAG-TTGGTGGCAC
* * * ** * * * * **
1460783 CCTTTAGTCCACAAAAAGCAGTATGCCTTTTTTGTTTCAAAACACACACGGGTTGGTGGCTCTAT
256 CCTTTAGTCCTCAAAGAGCAGGATGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCT
* * *
1460848 TTTGTCCTCAAAGAGCAGGACACCTTTTTTCTTTTTGAAGCCCACATGTA
321 TTAGTCCTCAAAGAGCAGG--A------TGCCTTTT----------TG-A
* * **** * * *
1460898 TTGGTGGCACCCTTTAGTCCTCAAAGTGTAAGACATATTTTTTCTTTTAAAGCGCACACGAGTTG
1 -T-GTGGCACCCTTTAGTCCTCAAAGAGCAAGATGCCTTTTTCCTTTCAAAGCCCACAC-AGTTG
* * * *
1460963 GTGGCACCCTTTTGTTCTCAAAGAGC-AGCATGCCTTTTTCCTTTCAAAGCTCGCACGAGTTGGT
63 GTGGCACCCTTTAGTCCTCAAAGAGCAAG-ATGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGT
* * ** * * * * *
1461027 GGCACCCCTTAGTCCTTAGTGAGCTGGAAGCCTTTTTCCTTTCAAAGCCCACAC-CGTT-ATCGA
127 GGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTTTCCTTTCAAAGCCCACACAAGTTGGT-GG
* * * * *
1461090 CACCCTTTAGTCCTCAAAAAGCAAGATGCCTTTTCCCTTTCAAAGCCCACAC-AATTGGTGGCAC
191 CACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTTTCTTTTCAAAGCCCACACGAGTTGGTGGCAC
* * * * * *
1461154 CCTTTAGTCCTTAAAGAGCAGGATGCCTTTTTCTTTTCAAAGCCCAGATGGGTTGGTGGCACCTT
256 CCTTTAGTCCTCAAAGAGCAGGATGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCT
*
1461219 TTAGTCCTCAAAGAGCAAGATGCCTTTTTCCTTTCAAAGCCCACACGA
321 TTAGTCCTCAAAGAGCAGGATGCC---TT--TTT------------GA
* * * * * *
1461267 CTTGGTGGCACCCTTTAGTCCTTAAAAAGCAGGATGCCTTTTTCGTTTCAAAACCCACACGGGTT
1 --T-GTGGCACCCTTTAGTCCTCAAAGAGCAAGATGCCTTTTTCCTTTCAAAGCCCACAC-AGTT
* * * ** * * *
1461332 GGTGGCTCCATTTTA-TCCTCAAAGAGCATGACACCTTTTTCTTTTCAAAGCCCACACGTGTTGT
62 GGTGGCACC-CTTTAGTCCTCAAAGAGCAAGATGCCTTTTTCCTTTCAAAGCCCACACGAGTTGG
* * * ** *
1461396 TGGCACCCTTTAGTGCTCAAAGAGCAAGACGTATTTTTCCTTTCACAA-CCCACAAAAGTTGGTG
126 TGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTTTCCTTTCA-AAGCCCACACAAGTTGGTG
* * * * *
1461460 GCACCCTTTAGTCCTCAAAGAGCAGGATGTCATTTTCCTTTCAAAGCCCGCACGAGTTGATGGCA
190 GCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTTTCTTTTCAAAGCCCACACGAGTTGGTGGCA
* * * * *
1461525 CCCTTCAGTCCTCAAAAAGCAGGATGCCTTTTTCCTTTCAAA-CCCAACAGGAATTAGTGGCACC
255 CCCTTTAGTCCTCAAAGAGCAGGATGCCTTTTTCCTTTCAAAGCCC-ACACGAGTTGGTGGCACC
* * *
1461589 CTTTAGTCCTCAATGATCAGGATGCCTTTTCGA
319 CTTTAGTCCTCAAAGAGCAGGATGCCTTTTTGA
* *
1461622 -GTGGTACCCTTTAGTCCTCAAAGAGCAAGACGCCTTTTTCCTTTCAAAGCCCACACAGTTGGTG
1 TGTGGCACCCTTTAGTCCTCAAAGAGCAAGATGCCTTTTTCCTTTCAAAGCCCACACAGTTGGTG
* * * ** * * * *
1461686 GCACCGTTGAGTCCTCAAAGAACAAGACACCTTTTTCCCTTCAAAGCCTACACGAGTTGTTGTCA
66 GCACCCTTTAGTCCTCAAAGAGCAAGATGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCA
* * ** * *
1461751 CCCTTTAGTCCTCGAAGAGTAGGACACTTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCC
131 CCCTTTAGTCCTCAAAGAGCAGGATGCCTTTTTCCTTTCAAAGCCCACACAAGTTGGTGGCACCC
* * **
1461816 TTTAGTCCCCAAAGAGCAGGACGCCTTTTTCTTTTCAAAGCCCACATAAGTTGGTGGCACCCTTT
196 TTTAGTCCTCAAAGAGCAGGATGCCTTTTTCTTTTCAAAGCCCACACGAGTTGGTGGCACCCTTT
* * *
1461881 AGTCCTCAAAGAGTAGGATGCCTTTTTCCTTTCAAAGCCCATACGAGTTTGTGGCACCCTTTAGT
261 AGTCCTCAAAGAGCAGGATGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGT
* **
1461946 CCTCAAAGAGCAAGATGCCTTTTTCC
326 CCTCAAAGAGCAGGATGCCTTTTTGA
* * * ** * *
1461972 T-T-TCA----AT-G-CC-CACACGAG-TTGGTGGCACCCTTCGGTCTCCTTTCAAAGCCCACAC
1 TGTGGCACCCTTTAGTCCTCA-AAGAGCAAGAT-G---CCTT---TTTCCTTTCAAAGCCCACAC
* * *
1462027 TAGTTGGTGGCACCCTTCT-GTCCCCAAAGAGCAGGATGCCTTTTTCCTTTCAAAGCCCACACAA
58 -AGTTGGTGGCACCCTT-TAGTCCTCAAAGAGCAAGATGCCTTTTTCCTTTCAAAGCCCACACGA
* * * *
1462091 GTTGGTGGCACCTTTTAGTCCTTAAAGAGCACGACT-ACTTTTTCCTTTCAAAGCCCACAC-AGT
121 GTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGA-TGCCTTTTTCCTTTCAAAGCCCACACAAGT
* ** * * *
1462154 TGGTGGCACCCTTTAGTCTTCAAAGAGCAGGACACCTTTTTCCTTTCAAAACCCACATGAGTTGG
185 TGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTTTCTTTTCAAAGCCCACACGAGTTGG
* * * * *
1462219 TGGCACCCTTTAGTCCTTAAAGTGCAGGATGCCTTTTTCCTTTCAAAGCCCACACGGGTAGATGG
250 TGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGG
* * * * **
1462284 CTCCCTTTAGCCCTCAAAAAGCCAGACACCTTTTTCTTTTTAAAGGCCACACGA
315 CACCCTTTAGTCCTCAAAGAG-CAG-GA----TGCCTTTTT-----------GA
* * * * * * * * *
1462338 GTCGGTGGCTCTCTTTTGTCCTTAAAGTGTAGGATGCCTTTTTTCTTTCAAAGTCCACACGAGTT
1 -T--GTGGCACCCTTTAGTCCTCAAAGAGCAAGATGCCTTTTTCCTTTCAAAGCCCACAC-AGTT
* ** * * *
1462403 GGAGGCACCCTTTAGTCCTCAAAGAGTGAGATGCCTTTTTCATTTCAAAGCCCACATGAGTTGCT
62 GGTGGCACCCTTTAGTCCTCAAAGAGCAAGATGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGT
* * * * ** * ** *
1462468 GGCACCCTTTAGTCCTCAAAGAGGAGGACGTCTTTTTCCATT-AGAAGGGCAAATGATTTGGTGG
127 GGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTTTCCTTTCA-AAGCCCACACAAGTTGGTGG
** * * * *
1462532 CATTCTTTAGTCCTCAATGAGCAGGATGCTTTTTTC-TTTCAAAGCCCAAACGAGTTGGTGGCAT
191 CACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTTTCTTTTCAAAGCCCACACGAGTTGGTGGCAC
* * * ** *
1462596 TCTTTTGTCCTCAAAGAGTAGGACACCTTTTTCCTTTCAAAGCCCACATGAGTTGGTGGCACCCT
256 CCTTTAGTCCTCAAAGAGCAGGATGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCT
* * *
1462661 TTACTCCTCAAAGAGCCGGAAGCCTTTTTCTTTTCAAACCCCGCA
321 TTAGTCCTCAAAGAGCAGGATGCC----T-TTTT--------G-A
* * * *
1462706 CGGGTTGGTCACACCATTTTA-TCCTCAAAGAG-AGTGATGCCTTTTTCTTTTAAAAGCCCACAC
1 --TG-TGG-CAC-CC--TTTAGTCCTCAAAGAGCA-AGATGCCTTTTTCCTTTCAAAGCCCACAC
* * * * *
1462769 GAGTTGGTGGCACCCTCTACTCCTTAAAGAGCAGGATGCCTTTTTCCTTTCAAAGCCCACACGTG
58 -AGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAAGATGCCTTTTTCCTTTCAAAGCCCACACGAG
* * **
1462834 TTGGTGGCACCCTTTAGTCCTCAAAGAGCAAGACATG--TTTTTCCTTTTAAAGCCCACACGGGT
122 TTGGTGGCACCCTTTAGTCCTCAAAGAGC-AG-GATGCCTTTTTCCTTTCAAAGCCCACACAAGT
** * * *** *
1462897 TGGTGGCACCCTTTTTTCCTTAAAGAGTAGGACATCTTTTTCCTTTCAATA-CCCACACGAGTTG
185 TGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTTTCTTTTCAA-AGCCCACACGAGTTG
* * * ** * * * *
1462961 GTGTCACTCTTTAGTCCTCAAAGCA-TAGGACACCTTTTTCCATTCAAAGGCCACAAGGGTTGGT
249 GTGGCACCCTTTAGTCCTCAAAG-AGCAGGATGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGT
* * *
1463025 GGCACCTTTTAGTCCACAAAGAGCAGGACGCCTTTTTCTTTTCAAAGCCCAGATA
313 GGCACCCTTTAGTCCTCAAAGAGCAGGATGCC----T-TTTT---------G--A
*
1463080 GGTTGGTGGCACCCTTTAGTCCTTAAAGAGC-AGCATGCCTTTTTCCTTTCAAAGCCCACACGAG
1 ---T-GTGGCACCCTTTAGTCCTCAAAGAGCAAG-ATGCCTTTTTCCTTTCAAAGCCCACAC-AG
* * * * *
1463144 TTGGTGGCA-CCTTTAGTCCTCAAAAAGCAAGAT-CCTTTTCTCGTTTAAAAGCCTACACGGGTT
60 TTGGTGGCACCCTTTAGTCCTCAAAGAGCAAGATGCCTTTT-TCCTTTCAAAGCCCACACGAGTT
* * * * ** * * *
1463207 GGTAGC-CTCATTTTGTCCTCAAAGAGTAGGACACTTTTTTCTTTTCAAAGCCCACACAAGTTTG
124 GGTGGCAC-CCTTTAGTCCTCAAAGAGCAGGATGCCTTTTTCCTTTCAAAGCCCACACAAGTTGG
* * ** * * * **
1463271 TGACACTCTTTAGTTTTCAAATAGCAGGATACCTTTTTCCTTTCAAAGCCCACGTGAGTTGGTGG
188 TGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTTTCTTTTCAAAGCCCACACGAGTTGGTGG
* ** * *
1463336 CACCCTTCAGTCCTCAAAGAGCAGGACACTTTTTTCCTTTCAAAGCCCACAAGAGTTGGTGGCAC
253 CACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCAC
*
1463401 CCTTTAGTCCTCGAAGAGCAGGATGCCTTTTTCCTTTCAAAGCCCA
318 CCTTTAGTCCTCAAAGAGCAGGATGCC---TT--TTT----G---A
* ** * **
1463447 TACAAGTTGGCCGCACCCTTTAGTCCTCGAAGAGCAAGACACCTTTTTCTTTTCAAAGCAAACAC
1 T----G-T-G--GCACCCTTTAGTCCTCAAAGAGCAAGATGCCTTTTTCCTTTCAAAGCCCACAC
* * * ** * *
1463512 GAGTTGGTGGCACCCTTTAGTCCTCGAAGAGGAGGACACCTTTTTCCCTTCAAAGCCCAAACGAG
58 -AGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAAGATGCCTTTTTCCTTTCAAAGCCCACACGAG
* * ** * * * * * *
1463577 TTGATGACATTCTTTTGTCTTGAAAGAGCAGGA--CACTTTTTTCTTCTCAAAACCCAC-CTGAG
122 TTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGC-CTTTTTCCTT-TCAAAGCCCACAC-AAG
* * * * * *
1463639 TTGGTGACACCCTTTAGTCCTCAAAGAGTCA-GATGTCTTTTTCCTTTCAAAACCCACATGGGTT
184 TTGGTGGCACCCTTTAGTCCTCAAAGAG-CAGGATGCCTTTTTCTTTTCAAAGCCCACACGAGTT
* * * * ** * * *
1463703 GG-CG-ACCTCATTTTGTCCTTAAAGAGTAGGAAACCTTTTTCTTTTCAAAGCCTACACGTGTTG
248 GGTGGCACC-C-TTTAGTCCTCAAAGAGCAGGATGCCTTTTTCCTTTCAAAGCCCACACGAGTTG
* * *
1463766 GTGGCACCCTTTAGTCCTCAATGAGCAAGACGCCTTTTTCCTTTCAAAGTCCATACGA
311 GTGGCACCCTTTAGTCCTCAAAGAGC-AG--G----ATGCCTTT-----T---T--GA
* * * **
1463824 GTTTGTGGCACCCTTTAGTTCTTAAAGAGCAGGATGCCTTTTTCCTTTCAAAGCCCACGTGAGTT
1 ---TGTGGCACCCTTTAGTCCTCAAAGAGCAAGATGCCTTTTTCCTTTCAAAGCCCAC-ACAGTT
* * * *** * * * *
1463889 AGTGGCACCCTTCAGTCCCTCAAAAAGTGGGACGCC-TTTTCTTTTCAAAGCCCATACAAGTTGG
62 GGTGGCACCCTTTAGT-CCTCAAAGAGCAAGATGCCTTTTTCCTTTCAAAGCCCACACGAGTTGG
* * * *** *
1463953 TGGCACCCTTTAGTCCTCAAAGAGCAGGACGCCTTTTCCCTTTCAAATCCCACATGGGTCGGTGG
126 TGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTTTCCTTTCAAAGCCCACACAAGTTGGTGG
* * * * ** * * * *
1464018 CTCCCGTTAGCCCTCAAA-ACGTAGGACACCTTTTTCCTTTCAAAGCCCACATGAGTTGGTCGCT
191 CACCCTTTAGTCCTCAAAGA-GCAGGATGCCTTTTTCTTTTCAAAGCCCACACGAGTTGGTGGCA
* * * * * * *
1464082 CCCTTTAGCCCACAAAGAGCATGATGCCTTTTTCTTTTCAAAGCCCAGATGGGTTGGTGGCACCC
255 CCCTTTAGTCCTCAAAGAGCAGGATGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCC
* *
1464147 TTTAGTCCTTAAAGAGTAGGATGCCTTTTTCTTTTCAAAGCCCACACGA
320 TTTAGTCCTCAAAGAGCAGGATGCC----T-TTTT------------GA
* * ** * * *
1464196 GTTGGTGGCACCCTTTAGTCCTCAAAAAGCAAGCTGCCTTTTTTGTTTTAAAACCCACACGGGTT
1 --T-GTGGCACCCTTTAGTCCTCAAAGAGCAAGATGCCTTTTTCCTTTCAAAGCCCACAC-AGTT
* * * * * * ** * ** *
1464261 GGCGGC-CTCATTTTGTCCTCAAAAAGTAGGACACCTTTTTTCTTTTCAAAGGTCACACGTGTTG
62 GGTGGCAC-CCTTTAGTCCTCAAAGAGCAAGATGCC-TTTTTCCTTTCAAAGCCCACACGAGTTG
* * * * * * **
1464325 GTGGAACCTTTTAGTCCTCAATGAGCAGGACGCCTTTTTCCTTTTAAAGCCTACAGGAG-TGTGT
125 GTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTTTCCTTTCAAAGCCCACACAAGTTG-GT
* ** * **
1464389 GACACCCTTTAGTTTTCAAAGAGCAGGATGCCTTTTTCCTTTCAAAGCCCATGCGAGTTGGTGGC
189 GGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTTTCTTTTCAAAGCCCACACGAGTTGGTGGC
* * ** *
1464454 ACCCTTCAGTCCTCAAAGAGTAGGACACTTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACC
254 ACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACC
* * *
1464519 CTTTAGTCCTCGAAGAGTAGGACGCCTTTTTCCTTTCAAAGCCCA
319 CTTTAGTCCTCAAAGAGCAGGATGCC---TT--TTT----G---A
* * * * * * *
1464564 CGTGAGTTGGTGACACCTTTAAGTCCTCAAAGAGGAGGACGCCCTTTTCTTTTTAAAGCCCACAC
1 --T--G-TGG-CAC-CCTTT-AGTCCTCAAAGAGCAAGATGCCTTTTTCCTTTCAAAGCCCACAC
* * * * * * * *
1464629 AAGTTGGTGGCACCCTCTAGTCCTCAAAAAACAAGACGCCTTTTTCCTTAT-AAATCCCATAGGG
58 -AGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAAGATGCCTTTTTCCTT-TCAAAGCCCACACGA
* * * * * * * ** *
1464693 GTCGATGGCTCCCGTTAGCCCTCAAAAAGTAGGACACCTTTTTCCTTTCAAAGCCCACACGAGTT
121 GTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTTTCCTTTCAAAGCCCACACAAGTT
** * * * * * * *
1464758 GGTCACTCCCTTTAGTCCACAAAGAGCATGATGCCTTTTTCTTTTCAAAGCCTAGATGGGTTGGT
186 GGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTTTCTTTTCAAAGCCCACACGAGTTGGT
* * ** *
1464823 GGCACCCTTTAGTCCTTAAAGAGTAGGATGTTTTTTTCTTTTCAAAGCCCACACTGAGTTGGTGG
251 GGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTTTCCTTTCAAAGCCCACAC-GAGTTGGTGG
* *
1464888 CACCCTTTAGTCCTCAAAAAGCAGGATGCTTTTTTTGTTTTAAAACCCACA
315 CACCCTTTAGTCCTCAAAGAGCAGGATGC-CTTTTTG-------------A
* * * * * * ** * * * *
1464939 CGGGTTAGCGGCCTCATTTTGTCCTCAAAGAGTAGGACACCTTTTTCTTTTCAAAGGCCAGACGT
1 --TG-TGGC-ACC-C-TTTAGTCCTCAAAGAGCAAGATGCCTTTTTCCTTTCAAAGCCCACAC-A
* * * * * * *
1465004 GTTGGTGGCACCTTTTAGTTCTCAATGAGCAGGACT-CCTTTTTCCTTTTAAAGTCTACACGAGT
59 GTTGGTGGCACCCTTTAGTCCTCAAAGAGCAAGA-TGCCTTTTTCCTTTCAAAGCCCACACGAGT
* * ** * *
1465068 TTGTGTCACCCTTTAGTTTTCAAAGAGTAGGATGCCTTTTTCCTTTCAAAGCCCA-AGCGAGTTG
123 TGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTTTCCTTTCAAAGCCCACA-CAAGTTG
* ** * *
1465132 GTGGCACCCTTCAGTCCTCAAAGAGCAGGACACCTTTTTCCTTTCAAAGCCCGCACGAGTTGGTG
187 GTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTTTCTTTTCAAAGCCCACACGAGTTGGTG
* * * * ** * *
1465197 GCACCTTTTAGTCTTCGAAGAGCATGATGCC-TTTTCCTTTTGAAGCCCACACGAGTTAGTGGCT
252 GCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCA
* * * *
1465261 TCCTTCAATCCTCAAAGAGCAGGATGCCTTTTTCCTTTCACATCCCACACAGT
317 CCCTTTAGTCCTCAAAGAGCAGGATGCC----T--TTT----T--------GA
* * * *
1465314 TAGTGGCACCCTTTAGTCCTCAAAGAGCAAGATGCCATTTCCCTTTTAAAGCCCACATAGTTGGT
1 T-GTGGCACCCTTTAGTCCTCAAAGAGCAAGATGCCTTTTTCCTTTCAAAGCCCACACAG-T--T
* * * * * * *
1465379 GGTGGCACCCTTTAGTCCTCTAAGAGCAAGATGCCTTTTTCTTTTCAGAGCCTAGA-TAGGTTAG
62 GGTGGCACCCTTTAGTCCTCAAAGAGCAAGATGCCTTTTTCCTTTCAAAGCCCACACGA-GTTGG
* * * *
1465443 TGGCACCCTTTAGTCCTCAAAGAGCAAGTTGCCTTTTTCCTTTCAAAGACCACACGAGTTGGTGG
126 TGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTTTCCTTTCAAAGCCCACACAAGTTGGTGG
* * * * * * *
1465508 CACCCTTTAGTCCTTAAAAAGTAGGATGCCTTTTTCGTTTCAAAACCCACACGGGTTGGTGGCTC
191 CACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTTTCTTTTCAAAGCCCACACGAGTTGGTGGCAC
* * * * ** * *
1465573 CATTTTGTCCTTAAAGAGTAGGACACCTTTTTCTTTTCAAACCCCACAC-ATGTTGGTGGCACCC
256 CCTTTAGTCCTCAAAGAGCAGGATGCCTTTTTCCTTTCAAAGCCCACACGA-GTTGGTGGCACCC
*
1465637 TTTAGTCCTCAAAAAGCA
320 TTTAGTCCTCAAAGAGCA
1465655 AGACGTATTT
Statistics
Matches: 13972, Mismatches: 2553, Indels: 2682
0.73 0.13 0.14
Matches are distributed among these distances:
321 4 0.00
322 10 0.00
323 9 0.00
324 11 0.00
325 7 0.00
326 6 0.00
327 2 0.00
328 62 0.00
329 241 0.02
330 26 0.00
331 6 0.00
332 9 0.00
333 13 0.00
334 10 0.00
335 5 0.00
336 1 0.00
337 2 0.00
339 1 0.00
340 1 0.00
341 1 0.00
342 15 0.00
343 26 0.00
344 16 0.00
345 20 0.00
346 31 0.00
347 31 0.00
348 243 0.02
349 2326 0.17
350 3251 0.23
351 474 0.03
352 38 0.00
353 31 0.00
354 44 0.00
355 28 0.00
356 13 0.00
357 14 0.00
358 5 0.00
359 1 0.00
360 1 0.00
361 2 0.00
362 4 0.00
363 8 0.00
364 10 0.00
365 13 0.00
366 27 0.00
367 21 0.00
368 20 0.00
369 33 0.00
370 784 0.06
371 1725 0.12
372 1402 0.10
373 619 0.04
374 43 0.00
375 26 0.00
376 25 0.00
377 29 0.00
378 18 0.00
379 7 0.00
380 6 0.00
381 3 0.00
382 3 0.00
383 1 0.00
384 2 0.00
386 7 0.00
387 3 0.00
388 8 0.00
389 4 0.00
390 17 0.00
391 66 0.00
392 2 0.00
393 3 0.00
395 5 0.00
396 8 0.00
397 5 0.00
398 2 0.00
399 5 0.00
400 2 0.00
401 4 0.00
402 4 0.00
403 7 0.00
404 4 0.00
405 8 0.00
406 10 0.00
407 9 0.00
408 11 0.00
409 14 0.00
410 267 0.02
411 1199 0.09
412 346 0.02
413 6 0.00
414 10 0.00
415 3 0.00
416 4 0.00
417 2 0.00
418 2 0.00
420 6 0.00
422 3 0.00
423 1 0.00
424 2 0.00
425 1 0.00
426 3 0.00
427 3 0.00
428 1 0.00
430 1 0.00
431 1 0.00
432 2 0.00
433 3 0.00
434 3 0.00
435 3 0.00
436 2 0.00
437 2 0.00
439 1 0.00
442 3 0.00
447 2 0.00
448 1 0.00
451 4 0.00
452 11 0.00
ACGTcount: A:0.24, C:0.27, G:0.19, T:0.30
Consensus pattern (351 bp):
TGTGGCACCCTTTAGTCCTCAAAGAGCAAGATGCCTTTTTCCTTTCAAAGCCCACACAGTTGGTG
GCACCCTTTAGTCCTCAAAGAGCAAGATGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCA
CCCTTTAGTCCTCAAAGAGCAGGATGCCTTTTTCCTTTCAAAGCCCACACAAGTTGGTGGCACCC
TTTAGTCCTCAAAGAGCAGGATGCCTTTTTCTTTTCAAAGCCCACACGAGTTGGTGGCACCCTTT
AGTCCTCAAAGAGCAGGATGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGT
CCTCAAAGAGCAGGATGCCTTTTTGA
Found at i:1448109 original size:226 final size:226
Alignment explanation
Indices: 1447877--1448328 Score: 627
Period size: 226 Copynumber: 2.0 Consensus size: 226
1447867 GACACCTTTT
* * * * * *** *
1447877 TCCTTTCAAAGCCTACACGAGTTGCTGGCACCCTTTAGTCCTCAAATAGCAGGATGGCTTTTTCT
1 TCCTTTCAAAGCCCACACAAATTGCTGGCACCCTTTAGTCCTCAAAGAGCAAGACACCTTTTTCA
* ** *
1447942 TTTCAAAGCCCACACAAGTTGGTGGCACCCTTTAGTCTTCAAAGAGCTA-GATGCCTTTTTCTTT
66 TTTCAAAGCCCACACAAGTTGGTGGCACCCTTTAGTCCTCAAAGAG-TAGGACACCTTTTTCCTT
* * * *
1448006 TCAAAGCACACACGAGTTTGTGGGACCCTTTAGTCCTCAAAGAGCAAGATGCCTTTTTCCTTTCA
130 TCAAAGCACACACAAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAAGATGCCTTTTTCATTTCA
* **
1448071 ACGCCCACACGAGTTGGTGGCACCCTTCAGTC
195 AAGCCCACACGAGTTCATGGCACCCTTCAGTC
*
1448103 TCCTTTCAAAGCCCACACAAATTGGTGGCACCCTTTAGTCCTCAAAGAGCAAGACACCTTTTTCA
1 TCCTTTCAAAGCCCACACAAATTGCTGGCACCCTTTAGTCCTCAAAGAGCAAGACACCTTTTTCA
* ** * *
1448168 TTTCAAAGCCTACAGGAGTTGTTGGCACCCTTTAGTCCTCGAAGAGTAGGACACCTTTTTCCTTT
66 TTTCAAAGCCCACACAAGTTGGTGGCACCCTTTAGTCCTCAAAGAGTAGGACACCTTTTTCCTTT
* *
1448233 CAAAGCTCACACAAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTTTCATTTCAA
131 CAAAGCACACACAAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAAGATGCCTTTTTCATTTCAA
*
1448298 AGCCCACACGAGTTCATGGCACCCTTTAGTC
196 AGCCCACACGAGTTCATGGCACCCTTCAGTC
1448329 CTTAAAAACC
Statistics
Matches: 196, Mismatches: 29, Indels: 2
0.86 0.13 0.01
Matches are distributed among these distances:
225 2 0.01
226 194 0.99
ACGTcount: A:0.24, C:0.28, G:0.18, T:0.29
Consensus pattern (226 bp):
TCCTTTCAAAGCCCACACAAATTGCTGGCACCCTTTAGTCCTCAAAGAGCAAGACACCTTTTTCA
TTTCAAAGCCCACACAAGTTGGTGGCACCCTTTAGTCCTCAAAGAGTAGGACACCTTTTTCCTTT
CAAAGCACACACAAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAAGATGCCTTTTTCATTTCAA
AGCCCACACGAGTTCATGGCACCCTTCAGTC
Found at i:1448118 original size:40 final size:40
Alignment explanation
Indices: 1448063--1448142 Score: 124
Period size: 40 Copynumber: 2.0 Consensus size: 40
1448053 GATGCCTTTT
* * *
1448063 TCCTTTCAACGCCCACACGAGTTGGTGGCACCCTTCAGTC
1 TCCTTTCAAAGCCCACACAAATTGGTGGCACCCTTCAGTC
*
1448103 TCCTTTCAAAGCCCACACAAATTGGTGGCACCCTTTAGTC
1 TCCTTTCAAAGCCCACACAAATTGGTGGCACCCTTCAGTC
1448143 CTCAAAGAGC
Statistics
Matches: 36, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
40 36 1.00
ACGTcount: A:0.21, C:0.35, G:0.17, T:0.26
Consensus pattern (40 bp):
TCCTTTCAAAGCCCACACAAATTGGTGGCACCCTTCAGTC
Found at i:1448134 original size:288 final size:284
Alignment explanation
Indices: 1447552--1448350 Score: 964
Period size: 288 Copynumber: 2.8 Consensus size: 284
1447542 CACGTGTTGT
*** * *
1447552 TGGCACCCTTTAGTCCTCAAAGAGCAAGACGTATTTTTCCTTTCAAAGCCCACAGAAGTTGGTGG
1 TGGCACCCTTTAGTCCTCAAAGAGCAAGACACCTTTTTCCTTTCAAAGCCTACAG-AGTTGCTGG
* * *
1447617 CACCCTTTAGTCCTCAAAGAGCAGGATGGCTTTTTCCTTTCAAAGCCCGCACTAGTTGGTGGTAC
65 CACCCTTTAGTCCTCAAAGAGCAGGATGGCTTTTTCCTTTCAAAGCCCACACAAGTTGGTGGCAC
* * * * * * *
1447682 CCTTCAGTCCTCAAAAAGCAGGACGCATTTTTCCTTTCAAATCCCACACGAGTTGGTGGCACCCT
130 CCTTTAGTCCTCAAAGAGCAGGATGCCTTTTTCATTTCAAAGCCCACACGAGTTCGTGGCACCCT
* * * *
1447747 TTAGTCCTCAAAGAGTAGGATGCCTTTTTGAGTGGCACCCTTTAGTCCTCAAAAAGCAAGATGCC
195 TTAGTCCTCAAAGAGCAAGATGCCTTTTTGACTGGCACAC--T-GTCCTCAAAAAGCAAGATGCC
* *
1447812 TTTTTCCTTTCAAAGCCCACACAATTGT
257 TTTCTCCTTTCAAAGCCCACACAATTGG
*
1447840 TGGCACCCTTTAGTCCTCAAAGGGCAAGACACCTTTTTCCTTTCAAAGCCTACACGAGTTGCTGG
1 TGGCACCCTTTAGTCCTCAAAGAGCAAGACACCTTTTTCCTTTCAAAGCCTACA-GAGTTGCTGG
* *
1447905 CACCCTTTAGTCCTCAAATAGCAGGATGGCTTTTTCTTTTCAAAGCCCACACAAGTTGGTGGCAC
65 CACCCTTTAGTCCTCAAAGAGCAGGATGGCTTTTTCCTTTCAAAGCCCACACAAGTTGGTGGCAC
* * * * *
1447970 CCTTTAGTCTTCAAAGAGCTA-GATGCCTTTTTCTTTTCAAAGCACACACGAGTTTGTGGGACCC
130 CCTTTAGTCCTCAAAGAGC-AGGATGCCTTTTTCATTTCAAAGCCCACACGAGTTCGTGGCACCC
* ** ** ** *
1448034 TTTAGTCCTCAAAGAGCAAGATGCCTTTTT-CCTTTCA-AC-G-CC-CACACGAG-TTGGTGGCA
194 TTTAGTCCTCAAAGAGCAAGATGCCTTTTTGACTGGCACACTGTCCTCA-AAAAGCAAGAT-G--
1448093 CCCTTCAGTCTCCTTTCAAAGCCCACACAAATTGG
255 -CCTT---TCTCCTTTCAAAGCCCACAC-AATTGG
* *
1448128 TGGCACCCTTTAGTCCTCAAAGAGCAAGACACCTTTTTCATTTCAAAGCCTACAGGAGTTGTTGG
1 TGGCACCCTTTAGTCCTCAAAGAGCAAGACACCTTTTTCCTTTCAAAGCCTACA-GAGTTGCTGG
* * *** *
1448193 CACCCTTTAGTCCTCGAAGAGTAGGACACCTTTTTCCTTTCAAAGCTCACACAAGTTGGTGGCAC
65 CACCCTTTAGTCCTCAAAGAGCAGGATGGCTTTTTCCTTTCAAAGCCCACACAAGTTGGTGGCAC
*
1448258 CCTTTAGTCCTCAAAGAGCAGGATGCCTTTTTCATTTCAAAGCCCACACGAGTTCATGGCACCCT
130 CCTTTAGTCCTCAAAGAGCAGGATGCCTTTTTCATTTCAAAGCCCACACGAGTTCGTGGCACCCT
* * *
1448323 TTAGTCCTTAAAAACCAAGATGCCTTTT
195 TTAGTCCTCAAAGAGCAAGATGCCTTTT
1448351 CGTTTAAAAA
Statistics
Matches: 443, Mismatches: 56, Indels: 24
0.85 0.11 0.05
Matches are distributed among these distances:
280 4 0.01
281 6 0.01
282 1 0.00
284 4 0.01
286 1 0.00
287 23 0.05
288 402 0.91
289 2 0.00
ACGTcount: A:0.25, C:0.28, G:0.18, T:0.29
Consensus pattern (284 bp):
TGGCACCCTTTAGTCCTCAAAGAGCAAGACACCTTTTTCCTTTCAAAGCCTACAGAGTTGCTGGC
ACCCTTTAGTCCTCAAAGAGCAGGATGGCTTTTTCCTTTCAAAGCCCACACAAGTTGGTGGCACC
CTTTAGTCCTCAAAGAGCAGGATGCCTTTTTCATTTCAAAGCCCACACGAGTTCGTGGCACCCTT
TAGTCCTCAAAGAGCAAGATGCCTTTTTGACTGGCACACTGTCCTCAAAAAGCAAGATGCCTTTC
TCCTTTCAAAGCCCACACAATTGG
Found at i:1448187 original size:102 final size:102
Alignment explanation
Indices: 1448004--1448204 Score: 285
Period size: 102 Copynumber: 2.0 Consensus size: 102
1447994 GCCTTTTTCT
* * * * ** *
1448004 TTTCAAAGCACACACGAGTTTGTGGGACCCTTTAGTCCTCAAAGAGCAAGATGCCTTTTTCCTTT
1 TTTCAAAGCACACACAAATTGGTGGCACCCTTTAGTCCTCAAAGAGCAAGACACCTTTTTCATTT
*
1448069 CAACGCCCACACGAGTTGGTGGCACCCTTCAGTCTCC
66 CAAAGCCCACACGAGTTGGTGGCACCCTTCAGTCTCC
*
1448106 TTTCAAAGCCCACACAAATTGGTGGCACCCTTTAGTCCTCAAAGAGCAAGACACCTTTTTCATTT
1 TTTCAAAGCACACACAAATTGGTGGCACCCTTTAGTCCTCAAAGAGCAAGACACCTTTTTCATTT
* * * *
1448171 CAAAGCCTACAGGAGTTGTTGGCACCCTTTAGTC
66 CAAAGCCCACACGAGTTGGTGGCACCCTTCAGTC
1448205 CTCGAAGAGT
Statistics
Matches: 86, Mismatches: 13, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
102 86 1.00
ACGTcount: A:0.25, C:0.29, G:0.18, T:0.28
Consensus pattern (102 bp):
TTTCAAAGCACACACAAATTGGTGGCACCCTTTAGTCCTCAAAGAGCAAGACACCTTTTTCATTT
CAAAGCCCACACGAGTTGGTGGCACCCTTCAGTCTCC
Found at i:1448227 original size:164 final size:164
Alignment explanation
Indices: 1447942--1448266 Score: 465
Period size: 164 Copynumber: 2.0 Consensus size: 164
1447932 GGCTTTTTCT
* * * ** *
1447942 TTTCAAAGCCCACACAAGTTGGTGGCACCCTTTAGTCTTCAAAGAGCTAGATGCCTTTTTCTTTT
1 TTTCAAAGCCCACACAAATTGGTGGCACCCTTTAGTCCTCAAAGAGCAAGACACCTTTTTCATTT
* **
1448007 CAAAGCACACACGAGTTTGTGGGACCCTTTAGTCCTCAAAGAGCAAGATGCCTTTTTCCTTTCAA
66 CAAAGCACACACGAGTTTGTGGCACCCTTTAGTCCTCAAAGAGCAAGACACCTTTTTCCTTTCAA
* *
1448072 CGCCCACACGAGTTGGTGGCACCCTTCAGTCTCC
131 AGCCCACACAAGTTGGTGGCACCCTTCAGTCTCC
1448106 TTTCAAAGCCCACACAAATTGGTGGCACCCTTTAGTCCTCAAAGAGCAAGACACCTTTTTCATTT
1 TTTCAAAGCCCACACAAATTGGTGGCACCCTTTAGTCCTCAAAGAGCAAGACACCTTTTTCATTT
* * * *
1448171 CAAAGC-CTACAGGAG-TTGTTGGCACCCTTTAGTCCTCGAAGAGTAGGACACCTTTTTCCTTTC
66 CAAAGCAC-ACACGAGTTTG-TGGCACCCTTTAGTCCTCAAAGAGCAAGACACCTTTTTCCTTTC
* *
1448234 AAAGCTCACACAAGTTGGTGGCACCCTTTAGTC
129 AAAGCCCACACAAGTTGGTGGCACCCTTCAGTC
1448267 CTCAAAGAGC
Statistics
Matches: 142, Mismatches: 17, Indels: 4
0.87 0.10 0.02
Matches are distributed among these distances:
163 4 0.03
164 138 0.97
ACGTcount: A:0.25, C:0.28, G:0.18, T:0.29
Consensus pattern (164 bp):
TTTCAAAGCCCACACAAATTGGTGGCACCCTTTAGTCCTCAAAGAGCAAGACACCTTTTTCATTT
CAAAGCACACACGAGTTTGTGGCACCCTTTAGTCCTCAAAGAGCAAGACACCTTTTTCCTTTCAA
AGCCCACACAAGTTGGTGGCACCCTTCAGTCTCC
Found at i:1448323 original size:124 final size:124
Alignment explanation
Indices: 1448103--1448659 Score: 600
Period size: 124 Copynumber: 4.5 Consensus size: 124
1448093 CCCTTCAGTC
* * **
1448103 TCCTTTCAAAGCCCACACAAATTGGTGGCACCCTTTAGTCCTCAAAGAGCAAGACACCTTTTTCA
1 TCCTTTCAAAGCCCACACAAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTTTCA
* * * * * * *
1448168 TTTCAAAGCCTACAGGAGTTGTTGGCACCCTTTAGTCCTCGAAGAGTAGGACACCTTTT
66 TTTCAAAGCCCACACGAGTTGTTGGCACCCTTTAGTCCTCAAAAAGCAAGACGCCTTTT
*
1448227 TCCTTTCAAAGCTCACACAAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTTTCA
1 TCCTTTCAAAGCCCACACAAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTTTCA
** * * *
1448292 TTTCAAAGCCCACACGAGTTCATGGCACCCTTTAGTCCTTAAAAACCAAGATGCC-TTT
66 TTTCAAAGCCCACACGAGTTGTTGGCACCCTTTAGTCCTCAAAAAGCAAGACGCCTTTT
* * * *** * * * *** *
1448350 TCGTTTAAAAACCCACATGGGTTGGTGG-TCCATTTTGTCCTCAAAGAGCAGGACAACTTTTTCT
1 TCCTTTCAAAGCCCACACAAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTTTCA
* * ** *
1448414 TTTCAAAGCCCACAC-ATGTTGTTGGCACCCTTTAGCCCTCAAAGAGCAAGACGTATTTC
66 TTTCAAAGCCCACACGA-GTTGTTGGCACCCTTTAGTCCTCAAAAAGCAAGACGCCTTTT
* * * *
1448473 TCTTTTCAAAGCCCACAGAAGTTGATGGCACCCTTTAGTCC-CTAAAGAGAAGGATGCCTTTTTC
1 TCCTTTCAAAGCCCACACAAGTTGGTGGCACCCTTTAGTCCTC-AAAGAGCAGGATGCCTTTTTC
* * * * * * * *
1448537 CTTTCAATGCCCGCTCGAGTTGGTGGCACCCTTCAGTCCTCAAAAATCAAGATGCCTTTT
65 ATTTCAAAGCCCACACGAGTTGTTGGCACCCTTTAGTCCTCAAAAAGCAAGACGCCTTTT
* * * * *
1448597 TGCTTTCAAAGCCAACACTAGTTAGTGGCACCCTTTAGTCCTCAAAGAGTAGGATGCCTTTTT
1 TCCTTTCAAAGCCCACACAAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTTT
1448660 GAGTGGTACC
Statistics
Matches: 351, Mismatches: 76, Indels: 12
0.80 0.17 0.03
Matches are distributed among these distances:
121 1 0.00
122 73 0.21
123 48 0.14
124 227 0.65
125 2 0.01
ACGTcount: A:0.26, C:0.27, G:0.18, T:0.29
Consensus pattern (124 bp):
TCCTTTCAAAGCCCACACAAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTTTCA
TTTCAAAGCCCACACGAGTTGTTGGCACCCTTTAGTCCTCAAAAAGCAAGACGCCTTTT
Found at i:1448456 original size:184 final size:186
Alignment explanation
Indices: 1448101--1448645 Score: 515
Period size: 184 Copynumber: 2.9 Consensus size: 186
1448091 CACCCTTCAG
* * * * * * *
1448101 TCTCCTTTCAAAGCCCACACAAATTGGTGGCACCCTTTAGTCCTCAAAGAGCAAGACACCTTTTT
1 TCTCATTTCAAAGCCCACACGAGTTGATGGCACCCTTTAGTCCTTAAAAACCAAGACACCTTTTT
* * * * * * * *
1448166 CATTTCAAAGCCTACAGGAGTTGTTGGCACCCTTTAGTCCTCGAAGAGTAGGACACCTTTTTCCT
66 CATTTAAAAACCCACAGGAGTTGGTGGCACCATTTAGTCCTCAAAGAGCAGGACAACTTTTTCCT
* * * * *
1448231 TTCAAAGCTCACACAAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTT
131 TTCAAAGCCCACACAAGTTGGTGGCACCCTTTAGCCCTCAAAGAGCAAGACGCATT
* * **
1448287 TTTCATTTCAAAGCCCACACGAGTTCATGGCACCCTTTAGTCCTTAAAAACCAAGATGCC-TTTT
1 TCTCATTTCAAAGCCCACACGAGTTGATGGCACCCTTTAGTCCTTAAAAACCAAGACACCTTTTT
* * * *
1448351 CGTTTAAAAACCCACATGG-GTTGGTGG-TCCATTTTGTCCTCAAAGAGCAGGACAACTTTTTCT
66 CATTTAAAAACCCACA-GGAGTTGGTGGCACCATTTAGTCCTCAAAGAGCAGGACAACTTTTTCC
* * *
1448414 TTTCAAAGCCCACACATGTTGTTGGCACCCTTTAGCCCTCAAAGAGCAAGACGTATT
130 TTTCAAAGCCCACACAAGTTGGTGGCACCCTTTAGCCCTCAAAGAGCAAGACGCATT
* * * * **
1448471 TCTCTTTTCAAAGCCCACA-GAAGTTGATGGCACCCTTTAGTCCCTAAAGA-GAAGGATGCCTTT
1 TCTCATTTCAAAGCCCACACG-AGTTGATGGCACCCTTTAGTCCTTAAAAACCAA-GACACCTTT
* * ** * ** * * * * * *** *
1448534 TTCCTTTCAATGCCCGCTCGAGTTGGTGGCACCCTTCAGTCCTCAAAAATCAAGATGCCTTTTTG
64 TTCATTTAAAAACCCACAGGAGTTGGTGGCACCATTTAGTCCTCAAAGAGCAGGACAACTTTTTC
* * * *
1448599 CTTTCAAAGCCAACACTAGTTAGTGGCACCCTTTAGTCCTCAAAGAG
129 CTTTCAAAGCCCACACAAGTTGGTGGCACCCTTTAGCCCTCAAAGAG
1448646 TAGGATGCCT
Statistics
Matches: 291, Mismatches: 62, Indels: 12
0.80 0.17 0.03
Matches are distributed among these distances:
183 3 0.01
184 128 0.44
185 45 0.15
186 115 0.40
ACGTcount: A:0.26, C:0.27, G:0.18, T:0.29
Consensus pattern (186 bp):
TCTCATTTCAAAGCCCACACGAGTTGATGGCACCCTTTAGTCCTTAAAAACCAAGACACCTTTTT
CATTTAAAAACCCACAGGAGTTGGTGGCACCATTTAGTCCTCAAAGAGCAGGACAACTTTTTCCT
TTCAAAGCCCACACAAGTTGGTGGCACCCTTTAGCCCTCAAAGAGCAAGACGCATT
Found at i:1448590 original size:246 final size:246
Alignment explanation
Indices: 1448140--1448596 Score: 639
Period size: 246 Copynumber: 1.9 Consensus size: 246
1448130 GCACCCTTTA
* * * *
1448140 GTCCTCAAAGAGCAAGACACCTTTTTCATTTCAAAGCCTACAGGAGTTGTTGGCACCCTTTAGTC
1 GTCCTCAAAGAGCAAGACAACTTTTTCATTTCAAAGCCCACAGCAGTTGTTGGCACCCTTTAGCC
* * * * * * *
1448205 CTCGAAGAGTAGGACACCTTTTTCCTTTCAAAGCTCACACAAGTTGGTGGCACCCTTTAGTCCTC
66 CTCAAAGAGCAAGACACATTTCTCCTTTCAAAGCCCACACAAGTTGATGGCACCCTTTAGTCCTC
* * *
1448270 AAAGAGCAGGATGCCTTTTTCATTTCAAAGCCCACACGAGTTCATGGCACCCTTTAGTCCTTAAA
131 AAAGAGAAGGATGCCTTTTTCATTTCAAAGCCCACACGAGTTCATGGCACCCTTCAGTCCTCAAA
1448335 AACCAAGATGCCTTTTCGTTTAAAAACCCACATGGGTTGGTGGTCCATTTT
196 AACCAAGATGCCTTTTCGTTTAAAAACCCACATGGGTTGGTGGTCCATTTT
* *
1448386 GTCCTCAAAGAGCAGGACAACTTTTTCTTTTCAAAGCCCACA-CATGTTGTTGGCACCCTTTAGC
1 GTCCTCAAAGAGCAAGACAACTTTTTCATTTCAAAGCCCACAGCA-GTTGTTGGCACCCTTTAGC
** * *
1448450 CCTCAAAGAGCAAGACGTATTTCTCTTTTCAAAGCCCACAGAAGTTGATGGCACCCTTTAGTCC-
65 CCTCAAAGAGCAAGACACATTTCTCCTTTCAAAGCCCACACAAGTTGATGGCACCCTTTAGTCCT
* * * * **
1448514 CTAAAGAGAAGGATGCCTTTTTCCTTTCAATGCCCGCTCGAGTTGGTGGCACCCTTCAGTCCTCA
130 C-AAAGAGAAGGATGCCTTTTTCATTTCAAAGCCCACACGAGTTCATGGCACCCTTCAGTCCTCA
*
1448579 AAAATCAAGATGCCTTTT
194 AAAACCAAGATGCCTTTT
1448597 TGCTTTCAAA
Statistics
Matches: 182, Mismatches: 27, Indels: 4
0.85 0.13 0.02
Matches are distributed among these distances:
245 2 0.01
246 180 0.99
ACGTcount: A:0.26, C:0.27, G:0.18, T:0.29
Consensus pattern (246 bp):
GTCCTCAAAGAGCAAGACAACTTTTTCATTTCAAAGCCCACAGCAGTTGTTGGCACCCTTTAGCC
CTCAAAGAGCAAGACACATTTCTCCTTTCAAAGCCCACACAAGTTGATGGCACCCTTTAGTCCTC
AAAGAGAAGGATGCCTTTTTCATTTCAAAGCCCACACGAGTTCATGGCACCCTTCAGTCCTCAAA
AACCAAGATGCCTTTTCGTTTAAAAACCCACATGGGTTGGTGGTCCATTTT
Found at i:1448660 original size:62 final size:61
Alignment explanation
Indices: 1448105--1448659 Score: 522
Period size: 62 Copynumber: 9.0 Consensus size: 61
1448095 CTTCAGTCTC
* * **
1448105 CTTTCAAAGCCCACACAAATTGGTGGCACCCTTTAGTCCTCAAAGAGCAAGACACCTTTTT
1 CTTTCAAAGCCCACACAAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTTT
* ** * * * **
1448166 CATTTCAAAGCCTACAGGAGTTGTTGGCACCCTTTAGTCCTCGAAGAGTAGGACACCTTTTT
1 C-TTTCAAAGCCCACACAAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTTT
*
1448228 CCTTTCAAAGCTCACACAAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTTT
1 -CTTTCAAAGCCCACACAAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTTT
* ** * * * *
1448290 CATTTCAAAGCCCACACGAGTTCATGGCACCCTTTAGTCCTTAAAAACCAAGATGCC-TTTT
1 C-TTTCAAAGCCCACACAAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTTT
* * *** * * * ***
1448351 CGTTTAAAAACCCACATGGGTTGGTGG-TCCATTTTGTCCTCAAAGAGCAGGACAACTTTTT
1 C-TTTCAAAGCCCACACAAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTTT
* * * * * ** *
1448412 CTTTTCAAAGCCCACACATGTTGTTGGCACCCTTTAGCCCTCAAAGAGCAAGACGTATTTCT
1 C-TTTCAAAGCCCACACAAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTTT
* * *
1448474 CTTTTCAAAGCCCACAGAAGTTGATGGCACCCTTTAGTCC-CTAAAGAGAAGGATGCCTTTTT
1 C-TTTCAAAGCCCACACAAGTTGGTGGCACCCTTTAGTCCTC-AAAGAGCAGGATGCCTTTTT
* * * * * * * *
1448536 CCTTTCAATGCCCGCTCGAGTTGGTGGCACCCTTCAGTCCTCAAAAATCAAGATGCCTTTTT
1 -CTTTCAAAGCCCACACAAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTTT
* * * *
1448598 GCTTTCAAAGCCAACACTAGTTAGTGGCACCCTTTAGTCCTCAAAGAGTAGGATGCCTTTTT
1 -CTTTCAAAGCCCACACAAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTTT
1448660 GAGTGGTACC
Statistics
Matches: 395, Mismatches: 91, Indels: 15
0.79 0.18 0.03
Matches are distributed among these distances:
60 19 0.05
61 51 0.13
62 322 0.82
63 3 0.01
ACGTcount: A:0.26, C:0.27, G:0.18, T:0.29
Consensus pattern (61 bp):
CTTTCAAAGCCCACACAAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTTT
Found at i:1448665 original size:41 final size:41
Alignment explanation
Indices: 1448620--1448700 Score: 126
Period size: 41 Copynumber: 2.0 Consensus size: 41
1448610 AACACTAGTT
* * *
1448620 AGTGGCACCCTTTAGTCCTCAAAGAGTAGGATGCCTTTTTG
1 AGTGGCACCCTTTAGTCCTCAAAGAGCAAGACGCCTTTTTG
*
1448661 AGTGGTACCCTTTAGTCCTCAAAGAGCAAGACGCCTTTTT
1 AGTGGCACCCTTTAGTCCTCAAAGAGCAAGACGCCTTTTT
1448701 CCTTTCAACG
Statistics
Matches: 36, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
41 36 1.00
ACGTcount: A:0.23, C:0.23, G:0.22, T:0.31
Consensus pattern (41 bp):
AGTGGCACCCTTTAGTCCTCAAAGAGCAAGACGCCTTTTTG
Found at i:1448743 original size:103 final size:103
Alignment explanation
Indices: 1448559--1448748 Score: 272
Period size: 103 Copynumber: 1.8 Consensus size: 103
1448549 GCTCGAGTTG
* * * *
1448559 GTGGCACCCTTCAGTCCTCAAAAATCAAGATGCCTTTTTGCTTTCAAAGCCAACACTAGTTAGTG
1 GTGGCACCCTTCAGTCCTCAAAAAGCAAGACGCCTTTTTCCTTTCAAAGCCAACACGAGTTAGTG
*
1448624 GCACCCTTTAGTCCTCAAAGAGTAGGATGCCTTTTTGA
66 GCACCCTTTAGCCCTCAAAGAGTAGGATGCCTTTTTGA
* * * * * * *
1448662 GTGGTACCCTTTAGTCCTCAAAGAGCAAGACGCCTTTTTCCTTTCAACGCCCATACGAGTTGGTG
1 GTGGCACCCTTCAGTCCTCAAAAAGCAAGACGCCTTTTTCCTTTCAAAGCCAACACGAGTTAGTG
1448727 GCACCCTTTAGCCCTCAAAGAG
66 GCACCCTTTAGCCCTCAAAGAG
1448749 CAAGACGTAT
Statistics
Matches: 75, Mismatches: 12, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
103 75 1.00
ACGTcount: A:0.25, C:0.27, G:0.19, T:0.28
Consensus pattern (103 bp):
GTGGCACCCTTCAGTCCTCAAAAAGCAAGACGCCTTTTTCCTTTCAAAGCCAACACGAGTTAGTG
GCACCCTTTAGCCCTCAAAGAGTAGGATGCCTTTTTGA
Found at i:1448744 original size:62 final size:62
Alignment explanation
Indices: 1448662--1448948 Score: 333
Period size: 62 Copynumber: 4.6 Consensus size: 62
1448652 GCCTTTTTGA
* * * *
1448662 GTGGTACCCTTTAGTCCTCAAAGAGCAAGACGCCTTTTTCCTTTCAACGCCCATACGAGTTG
1 GTGGCACCCTTTAGTCCTCAAAGAGCAAGATGCCTTTTTCCTTTCAAAGCCCACACGAGTTG
* * ** * * *
1448724 GTGGCACCCTTTAGCCCTCAAAGAGCAAGACGTATTTCTCTTTTTAAAGCCCACA-GAAGTTG
1 GTGGCACCCTTTAGTCCTCAAAGAGCAAGATGCCTTTTTCCTTTCAAAGCCCACACG-AGTTG
* * * *
1448786 ATGGCACCCTTTAGTCCCCAAAGAGCAGGATGCCTTTTTCCTTTCAAAGCCCGCACGAGTTG
1 GTGGCACCCTTTAGTCCTCAAAGAGCAAGATGCCTTTTTCCTTTCAAAGCCCACACGAGTTG
* * * * * * *
1448848 GTGGCACCCTTCAGTCCTCAAAAATCAAGATGCCTTTTTGCTTTCAAAGCCAACACTAGTTA
1 GTGGCACCCTTTAGTCCTCAAAGAGCAAGATGCCTTTTTCCTTTCAAAGCCCACACGAGTTG
* * *
1448910 GTGGCACCCTTTAGTCTTCAAAGAGTAGGATGCCTTTTT
1 GTGGCACCCTTTAGTCCTCAAAGAGCAAGATGCCTTTTT
1448949 GAGTGGTACC
Statistics
Matches: 186, Mismatches: 37, Indels: 4
0.82 0.16 0.02
Matches are distributed among these distances:
61 1 0.01
62 184 0.99
63 1 0.01
ACGTcount: A:0.25, C:0.27, G:0.19, T:0.29
Consensus pattern (62 bp):
GTGGCACCCTTTAGTCCTCAAAGAGCAAGATGCCTTTTTCCTTTCAAAGCCCACACGAGTTG
Found at i:1448793 original size:165 final size:164
Alignment explanation
Indices: 1448494--1448824 Score: 411
Period size: 165 Copynumber: 2.0 Consensus size: 164
1448484 CCCACAGAAG
* * *
1448494 TTGATGGCACCCTTTAGTCCCTAAAGAGAAGGATGCCTTTTTCCTTTCAATGCCCGCTCGAGTTG
1 TTGATGGCACCCTTTAGTCCCTAAAGAGAAGGACGCCTTTTTCCTTTCAACGCCCGATCGAGTTG
* * * * * *
1448559 GTGGCACCCTTCAGTCCTCAAAAATCAAGATGCCTTTTTGCTTTCAAAGCCAACACTAGTTAGTG
66 GTGGCACCCTTCAGCCCTCAAAAAGCAAGACGCATTTCTGCTTTCAAAGCCAACACAAGTTAGTG
* *
1448624 GCACCCTTTAGTCCTCAAAGAGTAGGATGCCTTT
131 GCACCCTTTAGTCCCCAAAGAGCAGGATGCCTTT
*
1448658 TTGAGTGGTACCCTTTAGT-CCTCAAAGAGCAA-GACGCCTTTTTCCTTTCAACGCCC-ATACGA
1 TTGA-TGGCACCCTTTAGTCCCT-AAAGAG-AAGGACGCCTTTTTCCTTTCAACGCCCGAT-CGA
* * * * * *
1448720 GTTGGTGGCACCCTTTAGCCCTCAAAGAGCAAGACGTATTTCT-CTTTTTAAAGCCCACAGAAGT
62 GTTGGTGGCACCCTTCAGCCCTCAAAAAGCAAGACGCATTTCTGC-TTTCAAAGCCAACACAAGT
1448784 T-GATGGCACCCTTTAGTCCCCAAAGAGCAGGATGCCTTT
126 TAG-TGGCACCCTTTAGTCCCCAAAGAGCAGGATGCCTTT
1448823 TT
1 TT
1448825 CCTTTCAAAG
Statistics
Matches: 143, Mismatches: 18, Indels: 11
0.83 0.10 0.06
Matches are distributed among these distances:
164 10 0.07
165 131 0.92
166 2 0.01
ACGTcount: A:0.24, C:0.27, G:0.20, T:0.30
Consensus pattern (164 bp):
TTGATGGCACCCTTTAGTCCCTAAAGAGAAGGACGCCTTTTTCCTTTCAACGCCCGATCGAGTTG
GTGGCACCCTTCAGCCCTCAAAAAGCAAGACGCATTTCTGCTTTCAAAGCCAACACAAGTTAGTG
GCACCCTTTAGTCCCCAAAGAGCAGGATGCCTTT
Found at i:1448835 original size:227 final size:227
Alignment explanation
Indices: 1448440--1448887 Score: 537
Period size: 227 Copynumber: 2.0 Consensus size: 227
1448430 TGTTGTTGGC
* *
1448440 ACCCTTTAGCCCTCAAAGAGCAAGACGTATTTCTCTTTTCAAAGCCCACAGAAGTTGATGGCACC
1 ACCCTTTAGCCCTCAAAGAGCAAGACGCATTTCTCCTTTCAAAGCCCACAGAAGTTGATGGCACC
* * * * * * *
1448505 CTTTAGTCCCTAAAGAGAAGGATGCCTTTTTCCTTTCAATGCCCGCTCGAGTTGGTGGCACCCTT
66 CTTTAGTCCCTAAAGAGAAGGACGCATTTCTCCTTTCAAAGCCCACTAGAGTTGATGGCACCCTT
* * * * *
1448570 CAGTCCTCAAAAATCAAGATGCCTTTTTGCTTTCAAAGCCAACACTAGTTAGTGGCACCCTTTAG
131 CAGTCCCCAAAAAGCAAGATGCCTTTTTCCTTTCAAAGCCAACACGAGTTAGTGGCACCCTTCAG
* *
1448635 TCCTCAAAGAGT-AGGATGCCTTTTTGAGTGGT
196 TCCTCAAA-AATCAAGATGCCTTTTTGAGTGGT
* * * * * *
1448667 ACCCTTTAGTCCTCAAAGAGCAAGACGCCTTTTTCCTTTCAACGCCCATACG-AGTTGGTGGCAC
1 ACCCTTTAGCCCTCAAAGAGCAAGACGCATTTCTCCTTTCAAAGCCCACA-GAAGTTGATGGCAC
* * *
1448731 CCTTTAG-CCCTCAAAGAGCAA-GACGTATTTCTCTTTTTAAAGCCCAC-AGAAGTTGATGGCAC
65 CCTTTAGTCCCT-AAAGAG-AAGGACGCATTTCTCCTTTCAAAGCCCACTAG-AGTTGATGGCAC
* * * ** *
1448793 CCTTTAGTCCCCAAAGAGCAGGATGCCTTTTTCCTTTCAAAGCCCGCACGAGTTGGTGGCACCCT
127 CCTTCAGTCCCCAAAAAGCAAGATGCCTTTTTCCTTTCAAAGCCAACACGAGTTAGTGGCACCCT
1448858 TCAGTCCTCAAAAATCAAGATGCCTTTTTG
192 TCAGTCCTCAAAAATCAAGATGCCTTTTTG
1448888 CTTTCAAAGC
Statistics
Matches: 185, Mismatches: 31, Indels: 10
0.82 0.14 0.04
Matches are distributed among these distances:
226 7 0.04
227 175 0.95
228 3 0.02
ACGTcount: A:0.25, C:0.27, G:0.19, T:0.29
Consensus pattern (227 bp):
ACCCTTTAGCCCTCAAAGAGCAAGACGCATTTCTCCTTTCAAAGCCCACAGAAGTTGATGGCACC
CTTTAGTCCCTAAAGAGAAGGACGCATTTCTCCTTTCAAAGCCCACTAGAGTTGATGGCACCCTT
CAGTCCCCAAAAAGCAAGATGCCTTTTTCCTTTCAAAGCCAACACGAGTTAGTGGCACCCTTCAG
TCCTCAAAAATCAAGATGCCTTTTTGAGTGGT
Found at i:1448954 original size:41 final size:41
Alignment explanation
Indices: 1448909--1448989 Score: 117
Period size: 41 Copynumber: 2.0 Consensus size: 41
1448899 AACACTAGTT
* * * *
1448909 AGTGGCACCCTTTAGTCTTCAAAGAGTAGGATGCCTTTTTG
1 AGTGGCACCCTTTAGTCCTCAAAGAGCAAGACGCCTTTTTG
*
1448950 AGTGGTACCCTTTAGTCCTCAAAGAGCAAGACGCCTTTTT
1 AGTGGCACCCTTTAGTCCTCAAAGAGCAAGACGCCTTTTT
1448990 CCTTTCGAAG
Statistics
Matches: 35, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
41 35 1.00
ACGTcount: A:0.23, C:0.22, G:0.22, T:0.32
Consensus pattern (41 bp):
AGTGGCACCCTTTAGTCCTCAAAGAGCAAGACGCCTTTTTG
Found at i:1449081 original size:164 final size:164
Alignment explanation
Indices: 1448783--1449112 Score: 459
Period size: 164 Copynumber: 2.0 Consensus size: 164
1448773 CCCACAGAAG
* * *
1448783 TTGATGGCACCCTTTAGTCCCCAAAGAGCAGGATGCCTTTTTCCTTTCAAAGCCCGCACGAGTTG
1 TTGATGGCACCCTTTAGTCCCCAAAGAGCAAGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTG
* ** *
1448848 GTGGCACCCTTCAGTCCTCAAAAATCAAGATGCCTTTTTGCTTTCAAAGCCAACACTAGTTAGTG
66 GTGGCACCCTTCAGTCCTCAAAAAGCAAGACACCTTTTTGCTTTCAAAGCCAACACGAGTTAGTG
* **
1448913 GCACCCTTTAGTCTTCAAAGAGTAGGATGCCTTT
131 GCACCCTTTAGTCGTCAAAGAGTAGGACACCTTT
* * *
1448947 TTGAGTGGTACCCTTTAGTCCTCAAAGAGCAAGACGCCTTTTTCCTTTCGAAGCCCACAC-AGTT
1 TTGA-TGGCACCCTTTAGTCCCCAAAGAGCAAGACGCCTTTTTCCTTTCAAAGCCCACACGAGTT
* * *
1449011 GGTGGCACCCTTTAGTCCTCAAAGAGCAAGACACCTTTTT-CATTTCAAAGCCTACACGAGTT-G
65 GGTGGCACCCTTCAGTCCTCAAAAAGCAAGACACCTTTTTGC-TTTCAAAGCCAACACGAGTTAG
*
1449074 CTGGCACCCTTTAGTCGTCGAAGAGTAGGACACCTTT
129 -TGGCACCCTTTAGTCGTCAAAGAGTAGGACACCTTT
1449111 TT
1 TT
1449113 CCTTTCAAAG
Statistics
Matches: 146, Mismatches: 17, Indels: 6
0.86 0.10 0.04
Matches are distributed among these distances:
163 2 0.01
164 95 0.65
165 49 0.34
ACGTcount: A:0.24, C:0.27, G:0.20, T:0.29
Consensus pattern (164 bp):
TTGATGGCACCCTTTAGTCCCCAAAGAGCAAGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTG
GTGGCACCCTTCAGTCCTCAAAAAGCAAGACACCTTTTTGCTTTCAAAGCCAACACGAGTTAGTG
GCACCCTTTAGTCGTCAAAGAGTAGGACACCTTT
Done.