Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold215
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 2124891
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
File 12 of 16
Found at i:1449106 original size:62 final size:62
Alignment explanation
Indices: 1448951--1449337 Score: 497
Period size: 62 Copynumber: 6.3 Consensus size: 62
1448941 GCCTTTTTGA
* * *
1448951 GTGGTACCCTTTAGTCCTCAAAGAGCAAGACGCCTTTTTCCTTTCGAAGCCCACAC-AGTTG
1 GTGGCACCCTTTAGTCCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACAAGTTG
* * * * *
1449012 GTGGCACCCTTTAGTCCTCAAAGAGCAAGACACCTTTTTCATTTCAAAGCCTACACGAGTTG
1 GTGGCACCCTTTAGTCCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACAAGTTG
* * * * * *
1449074 CTGGCACCCTTTAGTCGTCGAAGAGTAGGACACCTTTTTCCTTTCAAAGCCCACACGAGTTG
1 GTGGCACCCTTTAGTCCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACAAGTTG
* * *
1449136 GTGGCACCCTTTAGTCCTCAAAGAGCAGGCCGCCTTTTTCTTTTCGAAGCCCACACAAGTTG
1 GTGGCACCCTTTAGTCCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACAAGTTG
* * * *
1449198 GTGGCACCCTTTAGTCCTCAAAAATCAGGATGCCTTTTTCCTTTCAAAGCCCACACAAGTTT
1 GTGGCACCCTTTAGTCCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACAAGTTG
* * * * ** **
1449260 GTGGCACCCTTTAGTCCTTAAAGAGCAAGATGTCTTTTTCCTTTCAGCGCCCACACGTGTTG
1 GTGGCACCCTTTAGTCCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACAAGTTG
*
1449322 GTGGCACCCTTCAGTC
1 GTGGCACCCTTTAGTC
1449338 TCCTTTCAAA
Statistics
Matches: 286, Mismatches: 39, Indels: 1
0.88 0.12 0.00
Matches are distributed among these distances:
61 51 0.18
62 235 0.82
ACGTcount: A:0.23, C:0.29, G:0.19, T:0.29
Consensus pattern (62 bp):
GTGGCACCCTTTAGTCCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACAAGTTG
Found at i:1449112 original size:226 final size:227
Alignment explanation
Indices: 1448724--1449174 Score: 582
Period size: 226 Copynumber: 2.0 Consensus size: 227
1448714 ATACGAGTTG
* * *
1448724 GTGGCACCCTTTAGCCCTCAAAGAGCAAGACGTATTTCTCTTTTTAAAGCCCACAGAAGTTGATG
1 GTGGCACCCTTTAGCCCTCAAAGAGCAAGACGCATTTCTCCTTTCAAAGCCCACAGAAGTTGATG
* ** * * *
1448789 GCACCCTTTAGTCCCCAAAGAGCAGGATGCCTTTTTCCTTTCAAAGCCCGCACGAGTTGGTGGCA
66 GCACCCTTTAGTCCCCAAAGAGCAAGACACCTTTTTCATTTCAAAGCCCACACGAGTTGCTGGCA
** * *
1448854 CCCTTCAGTCCTCAAAAATCAAGATGCCTTTTTGCTTTCAAAGCCAACACTAGTTAGTGGCACCC
131 CCCTTCAGTCCTCAAAAATCAAGACACCTTTTTCCTTTCAAAGCCAACACGAGTTAGTGGCACCC
* * *
1448919 TTTAGTCTTCAAAGAGTAGGATGCCTTTTTGA
196 TTTAGTCCTCAAAGAGCAGGACGCCTTTTTGA
* * * * * * *
1448951 GTGGTACCCTTTAGTCCTCAAAGAGCAAGACGCCTTTTTCCTTTCGAAGCCCACA-CAGTTGGTG
1 GTGGCACCCTTTAGCCCTCAAAGAGCAAGACGCATTTCTCCTTTCAAAGCCCACAGAAGTTGATG
* *
1449015 GCACCCTTTAGTCCTCAAAGAGCAAGACACCTTTTTCATTTCAAAGCCTACACGAGTTGCTGGCA
66 GCACCCTTTAGTCCCCAAAGAGCAAGACACCTTTTTCATTTCAAAGCCCACACGAGTTGCTGGCA
* * * * * * *
1449080 CCCTTTAGTCGTCGAAGAGT-AGGACACCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACC
131 CCCTTCAGTCCTC-AAAAATCAAGACACCTTTTTCCTTTCAAAGCCAACACGAGTTAGTGGCACC
*
1449144 CTTTAGTCCTCAAAGAGCAGGCCGCCTTTTT
195 CTTTAGTCCTCAAAGAGCAGGACGCCTTTTT
1449175 CTTTTCGAAG
Statistics
Matches: 190, Mismatches: 33, Indels: 3
0.84 0.15 0.01
Matches are distributed among these distances:
226 139 0.73
227 51 0.27
ACGTcount: A:0.24, C:0.28, G:0.20, T:0.28
Consensus pattern (227 bp):
GTGGCACCCTTTAGCCCTCAAAGAGCAAGACGCATTTCTCCTTTCAAAGCCCACAGAAGTTGATG
GCACCCTTTAGTCCCCAAAGAGCAAGACACCTTTTTCATTTCAAAGCCCACACGAGTTGCTGGCA
CCCTTCAGTCCTCAAAAATCAAGACACCTTTTTCCTTTCAAAGCCAACACGAGTTAGTGGCACCC
TTTAGTCCTCAAAGAGCAGGACGCCTTTTTGA
Found at i:1449353 original size:40 final size:40
Alignment explanation
Indices: 1449298--1449377 Score: 124
Period size: 40 Copynumber: 2.0 Consensus size: 40
1449288 GATGTCTTTT
** **
1449298 TCCTTTCAGCGCCCACACGTGTTGGTGGCACCCTTCAGTC
1 TCCTTTCAAAGCCCACACAAGTTGGTGGCACCCTTCAGTC
1449338 TCCTTTCAAAGCCCACACAAGTTGGTGGCACCCTTCAGTC
1 TCCTTTCAAAGCCCACACAAGTTGGTGGCACCCTTCAGTC
1449378 CTCAAAGAGC
Statistics
Matches: 36, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
40 36 1.00
ACGTcount: A:0.17, C:0.36, G:0.20, T:0.26
Consensus pattern (40 bp):
TCCTTTCAAAGCCCACACAAGTTGGTGGCACCCTTCAGTC
Found at i:1449418 original size:102 final size:102
Alignment explanation
Indices: 1449236--1449426 Score: 292
Period size: 102 Copynumber: 1.9 Consensus size: 102
1449226 GATGCCTTTT
* * * * *
1449236 TCCTTTCAAAGCCCACACAAGTTTGTGGCACCCTTTAGTCCTTAAAGAGCAAGATGTCTTTTTCC
1 TCCTTTCAAAGCCCACACAAGTTGGTGGCACCCTTCAGTCCTCAAAGAGCAAGATGCCTTTCTCC
** * *
1449301 TTTCAGCGCCCACACGTGTTGGTGGCACCCTTCAGTC
66 TTTCAAAGCCAACACGAGTTGGTGGCACCCTTCAGTC
*
1449338 TCCTTTCAAAGCCCACACAAGTTGGTGGCACCCTTCAGTCCTCAAAGAGCAGGATGCCTTTCTCC
1 TCCTTTCAAAGCCCACACAAGTTGGTGGCACCCTTCAGTCCTCAAAGAGCAAGATGCCTTTCTCC
1449403 TTTCAAAGCCAACACGAGTTGGTG
66 TTTCAAAGCCAACACGAGTTGGTG
1449427 ACATCTTTTA
Statistics
Matches: 79, Mismatches: 10, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
102 79 1.00
ACGTcount: A:0.23, C:0.30, G:0.19, T:0.28
Consensus pattern (102 bp):
TCCTTTCAAAGCCCACACAAGTTGGTGGCACCCTTCAGTCCTCAAAGAGCAAGATGCCTTTCTCC
TTTCAAAGCCAACACGAGTTGGTGGCACCCTTCAGTC
Found at i:1449440 original size:62 final size:62
Alignment explanation
Indices: 1449338--1449678 Score: 400
Period size: 62 Copynumber: 5.5 Consensus size: 62
1449328 CCCTTCAGTC
* * *
1449338 TCCTTTCAAAGCCCACACAAGTTGGTGGCACCCTTCAGTCCTCAAAGAGCAGGATGCCTTTC
1 TCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTT
* * * * * *
1449400 TCCTTTCAAAGCCAACACGAGTTGGTGACATCTTTTAGTCCTCAAAAAGCAGGTTGCCTTTT
1 TCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTT
* * * * ** *
1449462 TCGTTTCAAA-CCTACACGGGTTGGTGGC-CTCATTTTTTCCTCAAAGAGTAGGACT-CCTTTT
1 TCCTTTCAAAGCCCACACGAGTTGGTGGCAC-CCTTTAGTCCTCAAAGAGCAGGA-TGCCTTTT
* * * * *
1449523 TCTTTTCAAAGCCTACACGAGTTTGTGGCACCCTTTAGTTCTGAAAGAGCAGGATGCCTTTT
1 TCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTT
* * * * *
1449585 TCTTTTCAAAGCCCACACGAGTTTGTGACACCCTTTAGTCCTCAAAGAGCAAGATGCCCTTT
1 TCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTT
*
1449647 TCCTTTCAATGCCCACACGAGTTGGTGGCACC
1 TCCTTTCAAAGCCCACACGAGTTGGTGGCACC
1449679 ATTCAGTCTC
Statistics
Matches: 235, Mismatches: 39, Indels: 10
0.83 0.14 0.04
Matches are distributed among these distances:
61 48 0.20
62 186 0.79
63 1 0.00
ACGTcount: A:0.23, C:0.27, G:0.19, T:0.30
Consensus pattern (62 bp):
TCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTT
Found at i:1449581 original size:123 final size:124
Alignment explanation
Indices: 1449341--1449678 Score: 385
Period size: 123 Copynumber: 2.7 Consensus size: 124
1449331 TTCAGTCTCC
* * * * *
1449341 TTTCAAAGCCCACACAAGTTGGTGGCACCCTTCAGTCCTCAAAGAGCAGGATGCCTTTCTCCTTT
1 TTTCAAAGCCCACACGAGTTGGTGACACCATTTAGTCCTCAAAGAGCAGGATGCCTTTTTCCTTT
* * * *
1449406 CAAAGCCAACACGAGTTGGTGACATCTTTTAGTCCTCAAAAAGCAGGTTGCCTTTTTCG
66 CAAAGCCAACACGAGTTGGTGGCACCCTTTAGTCCTCAAAAAGCAGGATGCCTTTTTCG
* * * ** * *
1449465 TTTCAAA-CCTACACGGGTTGGTGGC-CTCATTTTTTCCTCAAAGAGTAGGACT-CCTTTTTCTT
1 TTTCAAAGCCCACACGAGTTGGTGACAC-CATTTAGTCCTCAAAGAGCAGGA-TGCCTTTTTCCT
* * * * * *
1449527 TTCAAAGCCTACACGAGTTTGTGGCACCCTTTAGTTCTGAAAGAGCAGGATGCCTTTTTCT
64 TTCAAAGCCAACACGAGTTGGTGGCACCCTTTAGTCCTCAAAAAGCAGGATGCCTTTTTCG
* * * *
1449588 TTTCAAAGCCCACACGAGTTTGTGACACCCTTTAGTCCTCAAAGAGCAAGATGCCCTTTTCCTTT
1 TTTCAAAGCCCACACGAGTTGGTGACACCATTTAGTCCTCAAAGAGCAGGATGCCTTTTTCCTTT
* *
1449653 CAATGCCCACACGAGTTGGTGGCACC
66 CAAAGCCAACACGAGTTGGTGGCACC
1449679 ATTCAGTCTC
Statistics
Matches: 175, Mismatches: 34, Indels: 10
0.80 0.16 0.05
Matches are distributed among these distances:
122 1 0.01
123 100 0.57
124 73 0.42
125 1 0.01
ACGTcount: A:0.23, C:0.27, G:0.19, T:0.30
Consensus pattern (124 bp):
TTTCAAAGCCCACACGAGTTGGTGACACCATTTAGTCCTCAAAGAGCAGGATGCCTTTTTCCTTT
CAAAGCCAACACGAGTTGGTGGCACCCTTTAGTCCTCAAAAAGCAGGATGCCTTTTTCG
Found at i:1449602 original size:411 final size:412
Alignment explanation
Indices: 1447283--1465738 Score: 11086
Period size: 411 Copynumber: 43.9 Consensus size: 412
1447273 ATGCCTTTTC
** ** ** *
1447283 CCTTTCAAAGCCTGCAC-AGTTGGTGGCACTTTTTAGTCCTCAAAGAGCTGGATTGCCTTTTTCT
1 CCTTTCAAAGCCCACACAAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAAGA-TGCCTTTTTCC
* * * * * *
1447347 TTTCAGAGCCCAGAGGGGTTGGTGGCACCCTTTACTCCTCAAAGAGGAGGATGCCTTTTTCC--T
65 TTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTTTCCTTT
* * * * * * *
1447410 CAAAGGCCATACGAGTTTGTGGCACCCTTTAGTCCTTAAAAAGCAGGA-TACCATTTTCGTTTCA
130 CAAAGCCCACACGAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGACT-CCTTTTTCCTTTCA
* * * * * * * *
1447474 AAACCTACACGGGTTGGTGG-TCCATTTTGTCCTCAAAGAGTAGGACACCTTTTTCTTTTCAAA-
194 AAGCCCACACGAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGACGCCTTTTTCTTTTCAAAG
** * * * **
1447537 CCACACACGTGTTGTTGGCACCCTTTAGTCCTCAAAGAGCAAGACGTATTTTTCCTTTCAAAGCC
259 CC-CACACAAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTTTCCTTTCAAAGCC
* * * *
1447602 CACA-GAAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGGCTTTTTCCTTTCAAAGCCCG
323 CACACG-AGTTGGTGGCACCCTTTAGTCCTCAAAAAGCAAGATGCCTTTTTCCTTTCAAAGCCCA
* *
1447666 CACTAGTTGGTGGTACCCTTCAGTCCTCAAAAAGCAGGACGCATTTTT
387 CACGAGTTGGTGGCACCCTTCAG---T--------------C-----T
* * * *
1447714 CCTTTCAAATCCCACACGAGTTGGTGGCACCCTTTAGTCCTCAAAGAGTAGGATGCC---TT--T
1 CCTTTCAAAGCCCACACAAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAAGATGCCTTTTTCCT
* *
1447774 TT------------GA----GTGGCACCCTTTAGTCCTCAAAAAGCAAGATGCCTTTTTCCTTTC
66 TTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTTTCCTTTC
* * * * *
1447823 AAAGCCCACAC-AATTGTTGGCACCCTTTAGTCCTCAAAGGGCAAGACACCTTTTTCCTTTCAAA
131 AAAGCCCACACGAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGACTCCTTTTTCCTTTCAAA
* * * * *
1447887 GCCTACACGAGTTGCTGGCACCCTTTAGTCCTCAAATAGCAGGATGGCTTTTTCTTTTCAAAGCC
196 GCCCACACGAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGACGCCTTTTTCTTTTCAAAGCC
* * *
1447952 CACACAAGTTGGTGGCACCCTTTAGTCTTCAAAGAGCTA-GATGCCTTTTTCTTTTCAAAGCACA
261 CACACAAGTTGGTGGCACCCTTTAGTCCTCAAAGAGC-AGGATGCCTTTTTCCTTTCAAAGCCCA
* * * *
1448016 CACGAGTTTGTGGGACCCTTTAGTCCTCAAAGAGCAAGATGCCTTTTTCCTTTCAACGCCCACAC
325 CACGAGTTGGTGGCACCCTTTAGTCCTCAAAAAGCAAGATGCCTTTTTCCTTTCAAAGCCCACAC
1448081 GAGTTGGTGGCACCCTTCAGTCT
390 GAGTTGGTGGCACCCTTCAGTCT
* ** *
1448104 CCTTTCAAAGCCCACACAAATTGGTGGCACCCTTTAGTCCTCAAAGAGCAAGACACCTTTTTCAT
1 CCTTTCAAAGCCCACACAAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAAGATGCCTTTTTCCT
* * * * * **
1448169 TTCAAAGCCTACAGGAGTTGTTGGCACCCTTTAGTCCTCGAAGAGTAGGACACCTTTTTCCTTTC
66 TTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTTTCCTTTC
* * *
1448234 AAAGCTCACACAAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGA-TGCCTTTTTCATTTCAA
131 AAAGCCCACACGAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGACT-CCTTTTTCCTTTCAA
** * * * * * * * *
1448298 AGCCCACACGAGTTCATGGCACCCTTTAGTCCTTAAAAACCAAGATGCC-TTTTCGTTTAAAAAC
195 AGCCCACACGAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGACGCCTTTTTCTTTTCAAAGC
*** * * * *** *
1448362 CCACATGGGTTGGTGG-TCCATTTTGTCCTCAAAGAGCAGGACAACTTTTTCTTTTCAAAGCCCA
260 CCACACAAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTTTCCTTTCAAAGCCCA
* * * * ** * *
1448426 CAC-ATGTTGTTGGCACCCTTTAGCCCTCAAAGAGCAAGACGTATTTCTCTTTTCAAAGCCCACA
325 CACGA-GTTGGTGGCACCCTTTAGTCCTCAAAAAGCAAGATGCCTTTTTCCTTTCAAAGCCCACA
*
1448490 -GAAGTTGATGGCACCCTTTAGTCCCTAAAGAGAAGGATGCCTTTTT
389 CG-AGTTGGTGGCACCC--T--T--C--------A-G-T--C----T
* * * * * * * *
1448536 CCTTTCAATGCCCGCTCGAGTTGGTGGCACCCTTCAGTCCTCAAAAATCAAGATGCCTTTTTGCT
1 CCTTTCAAAGCCCACACAAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAAGATGCCTTTTTCCT
* * * *
1448601 TTCAAAGCCAACACTAGTTAGTGGCACCCTTTAGTCCTCAAAGAGTAGGATGCC---TT--TTT-
66 TTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTTTCCTTTC
* * *
1448660 -----------GAG-TGGT---ACCCTTTAGTCCTCAAAGAGCAAGACGCCTTTTTCCTTTCAAC
131 AAAGCCCACACGAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGACTCCTTTTTCCTTTCAAA
* * * ** * *
1448710 GCCCATACGAGTTGGTGGCACCCTTTAGCCCTCAAAGAGCAAGACGTATTTCTCTTTTTAAAGCC
196 GCCCACACGAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGACGCCTTTTTCTTTTCAAAGCC
* * * *
1448775 CACAGAAGTTGATGGCACCCTTTAGTCCCCAAAGAGCAGGATGCCTTTTTCCTTTCAAAGCCCGC
261 CACACAAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTTTCCTTTCAAAGCCCAC
* * * * *
1448840 ACGAGTTGGTGGCACCCTTCAGTCCTCAAAAATCAAGATGCCTTTTTGCTTTCAAAGCCAACACT
326 ACGAGTTGGTGGCACCCTTTAGTCCTCAAAAAGCAAGATGCCTTTTTCCTTTCAAAGCCCACACG
* *
1448905 AGTTAGTGGCACCCTTTAG--T
391 AGTTGGTGGCACCCTTCAGTCT
*** * *** * *
1448925 -C-TTCAAAGAGTAGGATGCCTTTTTGAGTGGTACCCTTTAGTCCTCAAAGAGCAAGACGCCTTT
1 CCTTTCAAAGCCCA-CA---CAAGTTG-GTGGCACCCTTTAGTCCTCAAAGAGCAAGATGCCTTT
* * **
1448988 TTCCTTTCGAAGCCCACAC-AGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAAGACACCTTTTTC
61 TTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTTTC
* * * * * * *
1449052 ATTTCAAAGCCTACACGAGTTGCTGGCACCCTTTAGTCGTCGAAGAGTAGGACACCTTTTTCCTT
126 CTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGACTCCTTTTTCCTT
* *
1449117 TCAAAGCCCACACGAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGCCGCCTTTTTCTTTTCG
191 TCAAAGCCCACACGAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGACGCCTTTTTCTTTTCA
* *
1449182 AAGCCCACACAAGTTGGTGGCACCCTTTAGTCCTCAAAAATCAGGATGCCTTTTTCCTTTCAAAG
256 AAGCCCACACAAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTTTCCTTTCAAAG
* * * * * **
1449247 CCCACACAAGTTTGTGGCACCCTTTAGTCCTTAAAGAGCAAGATGTCTTTTTCCTTTCAGCGCCC
321 CCCACACGAGTTGGTGGCACCCTTTAGTCCTCAAAAAGCAAGATGCCTTTTTCCTTTCAAAGCCC
*
1449312 ACACGTGTTGGTGGCACCCTTCAGTCT
386 ACACGAGTTGGTGGCACCCTTCAGTCT
* * *
1449339 CCTTTCAAAGCCCACACAAGTTGGTGGCACCCTTCAGTCCTCAAAGAGCAGGATGCCTTTCTCCT
1 CCTTTCAAAGCCCACACAAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAAGATGCCTTTTTCCT
* * * * * * *
1449404 TTCAAAGCCAACACGAGTTGGTGACATCTTTTAGTCCTCAAAAAGCAGGTTGCCTTTTTCGTTTC
66 TTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTTTCCTTTC
* * * ** * *
1449469 AAA-CCTACACGGGTTGGTGGC-CTCATTTTTTCCTCAAAGAGTAGGACTCCTTTTTCTTTTCAA
131 AAAGCCCACACGAGTTGGTGGCAC-CCTTTAGTCCTCAAAGAGCAGGACTCCTTTTTCCTTTCAA
* * * * *
1449532 AGCCTACACGAGTTTGTGGCACCCTTTAGTTCTGAAAGAGCAGGATGCCTTTTTCTTTTCAAAGC
195 AGCCCACACGAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGACGCCTTTTTCTTTTCAAAGC
* * * * * *
1449597 CCACACGAGTTTGTGACACCCTTTAGTCCTCAAAGAGCAAGATGCCCTTTTCCTTTCAATGCCCA
260 CCACACAAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTTTCCTTTCAAAGCCCA
* * * * **** * *
1449662 CACGAGTTGGTGGCACCATTCAGTCTCCTTTCAAAGCCCACA-CAAGTTG-GTGGCACCCTT--T
325 CACGAGTTGGTGGCACCCTTTAG--TCC--TCAAA----A-AGCAAGATGCCTTTTTCCTTTCAA
* * *** ** * *
1449723 AGTCCTCA--AAAAGCAGG-ATGCCTT---TTT
381 AGCCCACACGAGTTGGTGGCA-CCCTTCAGTCT
* * * ** * * *
1449750 CATTTCAAAGCTCACACGAGTTCATGGCACCCTTTAGTCCTTAAA-ATGCAGGATGCCTTTTTCG
1 CCTTTCAAAGCCCACACAAGTTGGTGGCACCCTTTAGTCCTCAAAGA-GCAAGATGCCTTTTTCC
* * * * * * ** *
1449814 TTTAAAAACCCACATTG-GTTGGTGG-TCCATTTTGTCCTCAAAGAGCAGGACACCTTTTTCTTT
65 TTTCAAAGCCCACA-CGAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTTTCCTT
* * * * *
1449877 TCAAAGCCCGCAC-ATGTTGTTGGCACCCTTTAGTCCTCAAAGAGCAAGACGT-ATTTTTCTTTT
129 TCAAAGCCCACACGA-GTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGAC-TCCTTTTTCCTTT
* * * *
1449940 CAAAGCCCACA-GAAGTTGATGGGACCCTTTAGTCCTCAAATAGCAGGATGCCTTTTT-TCTTTC
192 CAAAGCCCACACG-AGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGACGCCTTTTTCT-TTTC
* * * * *
1450003 GAAGCCCGCACGAGTTGGTGGCACCCTTCAGTCCTCAAAAAGCAGGATGCCTTTTTCCTTTCAAA
255 AAAGCCCACACAAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTTTCCTTTCAAA
* * * *** *
1450068 GCCCACACGAGTTAGTGTCACCCTTTAGTCCTCAAAAAGCAGGATGCCTTTTT-GAGT---GGCA
320 GCCCACACGAGTTGGTGGCACCCTTTAGTCCTCAAAAAGCAAGATGCCTTTTTCCTTTCAAAGC-
*** * * *** * ** *
1450129 CC-CTTTAGTCCGGAAAGAGCAAGATGCCTTTTT
384 CCACACGAGT-TGG--TG-GCACCCT-TCAGTCT
* * **
1450162 CCTTTCAAAGCCCACAC-AGTTGGTGGCACCCTTTAATCCTCAAAGAGCAAGACGTATTTTTCCT
1 CCTTTCAAAGCCCACACAAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAAGATGCCTTTTTCCT
* * * *
1450226 TTCAAAGCCCATA-GAAGTTGGTGGTACCCTTTAGTTCTCAAAGAGAAGGATGCCTTTTTCCTTT
66 TTCAAAGCCCACACG-AGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTTTCCTTT
* * * * *
1450290 CAAAGCCCGCACGAATTGGTGGCACTCTTTAGTCCTCAAAAAGCTGGA-TGCCTTTTTCCTTTCA
130 CAAAGCCCACACGAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGACT-CCTTTTTCCTTTCA
* * *
1450354 AAGCCCACACGAATTGGTGGCACCCTTTAGTCCTCAAAGAGCAGCATGCC----T-TTTT-----
194 AAGCCCACACGAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGACGCCTTTTTCTTTTCAAAG
** *
1450409 -------AA----GTGGCACCCTTTAGTCCTCAAAGAGCAGGCCGCCTTTTTCTTTTCAAAGCCC
259 CCCACACAAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTTTCCTTTCAAAGCCC
* * *
1450463 ACACAAGTTGGTGGCACCCTTTAGTCCTCAAAAATCAGGATGCCTTTTTCCTTTCAAAGCCCACA
324 ACACGAGTTGGTGGCACCCTTTAGTCCTCAAAAAGCAAGATGCCTTTTTCCTTTCAAAGCCCACA
* * *
1450528 CAAGTTTGTGGCACCCTTTAG--T
389 CGAGTTGGTGGCACCCTTCAGTCT
* * ***** * * * ** *
1450550 CC-TT-AAAG---A-GCAAGAT-GTCTTTTTCCTTTCAG-CGCCCACACGTG-TTGGTGGAACCC
1 CCTTTCAAAGCCCACACAAGTTGGT-GGCACCCTTT-AGTC-CTCA-AAGAGCAAGAT-G---CC
* * * *
1450606 TTCAGTCTCCTTTCAAAGCCAACACAAGTTGGTGGCACCCTTCAGTCCTCAAAGAGCAGGATGCC
58 TT---TTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCC
* * * * * * *
1450671 TTTCTCCTTTCAAAGCCAACACGAGTTGGTGACAGCTTTTAGTCCTCAAAAAGCAGG-TTGCCTT
120 TTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGACT-CCTT
* * * * ** * *
1450735 TTTCGTTTCAAA-CCTACACGGGTTGGTGGC-CTCATTTTTTCCTCAAAGAGTAGGACTCCTTTT
184 TTTCCTTTCAAAGCCCACACGAGTTGGTGGCAC-CCTTTAGTCCTCAAAGAGCAGGACGCCTTTT
* * * * *
1450798 TCTTTTCAAAGCCTACACGAGTTTGTGGCACCCTTCAGTCCTCAAAAAGCAGGATGCCTTTTTCC
248 TCTTTTCAAAGCCCACACAAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTTTCC
* * ***
1450863 TTTCAAAGCCCACACGAGTTAGTGGCACCCTTTAGTCCTCAAAAAGCAGGATGCCTTTTT-GAGT
313 TTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGTCCTCAAAAAGCAAGATGCCTTTTTCCTTT
* *** * * *** * ** *
1450927 ---GGCACC-CTTTAGTCCGGAAAGAGCAAGATGCCTTTTT
378 CAAAGC-CCACACGAGT-TGG--TG-GCACCCT-TCAGTCT
* * **
1450964 CCTTTCAAAGCCCACAC-AGTTGGTGGCACCCTTTAATCCTCAAAGAGCAAGACGTATTTTTCCT
1 CCTTTCAAAGCCCACACAAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAAGATGCCTTTTTCCT
* * * *
1451028 TTCAAAGCCCATA-GAAGTTGGTGGTACCCTTTAGTTCTCAAAGAGAAGGATGCCTTTTTCCTTT
66 TTCAAAGCCCACACG-AGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTTTCCTTT
* * * * *
1451092 CAAAGCCCGCACGAATTGGTGGCACTCTTTAGTCCTCAAAAAGCTGGA-TGCCTTTTTCCTTTCA
130 CAAAGCCCACACGAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGACT-CCTTTTTCCTTTCA
* * *
1451156 AAGCCCACACGAATTGGTGGCACCCTTTAGTCCTCAAAGAGCAGCATGCC----T-TTTT-----
194 AAGCCCACACGAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGACGCCTTTTTCTTTTCAAAG
** *
1451211 -------AA----GTGGCACCCTTTAGTCCTCAAAGAGCAGGCCGCCTTTTTCTTTTCAAAGCCC
259 CCCACACAAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTTTCCTTTCAAAGCCC
* * *
1451265 ACACAAGTTGGTGGCACCCTTTAGTCCTCAAAAATCAGGATGCCTTTTTCCTTTCAAAGCCCACA
324 ACACGAGTTGGTGGCACCCTTTAGTCCTCAAAAAGCAAGATGCCTTTTTCCTTTCAAAGCCCACA
* * *
1451330 CAAGTTTGTGGCACCCTTTAG--T
389 CGAGTTGGTGGCACCCTTCAGTCT
* * ***** * * ** *
1451352 CC-TT-AAAG---A-GCAAGAT-GTCTTTTTCCTTTCAGTGCC-CACACGTG-TTGGTGGAACCC
1 CCTTTCAAAGCCCACACAAGTTGGT-GGCACCCTTT-AGT-CCTCA-AAGAGCAAGAT-G---CC
* * ** *
1451408 TTCAGTCTCCTTTCAAAGCCAACATAAGTTGGTGGCACCCTTCAGTCCTCAAAGAGCAGGATGCC
58 TT---TTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCC
* * * * * * *
1451473 TTTCTCCTTTCAAAGCCAACACGAGTTGGTGACAGCTTTTAGTCCTCAAAAAGCAGG-TTGCCTT
120 TTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGACT-CCTT
* * * * ** * *
1451537 TTTCGTTTCAAA-CCTACACGGGTTGGTGGC-CTCATTTTTTCCTCAAAGAGTAGGACTCCTTTT
184 TTTCCTTTCAAAGCCCACACGAGTTGGTGGCAC-CCTTTAGTCCTCAAAGAGCAGGACGCCTTTT
* * * * * *
1451600 TCTTTTCAAAGCCTACACGAGTTTGTGGCACCCTTTAGTTCTGAAAGAGCAGGATGCCTTTTTCT
248 TCTTTTCAAAGCCCACACAAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTTTCC
* * * *
1451665 TTTCAAAGCCCACACGAGTTTGTGACACCCTTTAGTCCTCAAAGAGCAAGATGCCCTTTTCCTTT
313 TTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGTCCTCAAAAAGCAAGATGCCTTTTTCCTTT
* *
1451730 CAATGCCCACACGAGTTGGTGGCACCATTCAGTCT
378 CAAAGCCCACACGAGTTGGTGGCACCCTTCAGTCT
* *
1451765 CCTTTCAAAGCCCACACAAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTTTCAT
1 CCTTTCAAAGCCCACACAAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAAGATGCCTTTTTCCT
* ** * *
1451830 TTCAAAGCTCACACGAGTTCATGGCACCCTTTAGTCCTTAAA-ATGCAGGATGCCTTTTTCGTTT
66 TTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGTCCTCAAAGA-GCAGGATGCCTTTTTCCTTT
* * * * * * * * * *
1451894 AAAAACCCACATTG-GTTGGTGG-TCCATTTTGTCTTCAAAGAGCAGGACACCTTTTTCTTTTTA
130 CAAAGCCCACA-CGAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGACTCCTTTTTCCTTTCA
* * * **
1451957 AAGCCCGCAC-ATGTTGTTGGCACCCTTTAGTCCTCAAAGAGCAAGACGTATTTTTCTTTTCAAA
194 AAGCCCACACGA-GTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGACGCCTTTTTCTTTTCAAA
* * * * *
1452021 GCCCACAGAAGTTGATGGGACCCTTTAGTCCTCAAATAGCAGGATGCCTTTTTCCTTTCGAAGCC
258 GCCCACACAAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTTTCCTTTCAAAGCC
* * *
1452086 CGCACGAGTTGGTGGCACCCTTCAGTCCTCAAAAAGCAGGATGCCTTTTTCCTTTCAAAGCCCAC
323 CACACGAGTTGGTGGCACCCTTTAGTCCTCAAAAAGCAAGATGCCTTTTTCCTTTCAAAGCCCAC
* *
1452151 ACGAGTTAGTGGCACCCTTTAG--T
388 ACGAGTTGGTGGCACCCTTCAGTCT
** *** * * *
1452174 CC--TCAAAGAGCAGCATGCCTTTTTAAGTGGCACCCTTTAGTCCTCAAAGAGCAAGACGCTTTT
1 CCTTTCAAAGCCCA-CA---CAAGTT-GGTGGCACCCTTTAGTCCTCAAAGAGCAAGATGCCTTT
* * * * *
1452237 TTCCTTTCAAAGCCCACAGGAGTTGGTGGCACCTTTTAGTCCTCAAAGAGTAGGACGCATTTTTC
61 TTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTTTC
* * * * *
1452302 TTTTCAAAGCTCATACAAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGACGCCTTTTTCCTT
126 CTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGACTCCTTTTTCCTT
* * * *
1452367 TCAAAGCCCACACGAGTTTGTGGCACCCTTTAGTCCTCAAAGAGCAAGATGCCTTTTTCCTTTCA
191 TCAAAGCCCACACGAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGACGCCTTTTTCTTTTCA
* *
1452432 ACGCCCACACGAGTTGGTGGCACCCTTTAGTCTCCTTTCAAAACCCACACAAGTTGGTGGCACCC
256 AAGCCCACACAAGTTGGTGGCACCCTTTAG-------T---------C-C-------T--CA---
* * *
1452497 TTTAGTCCTCAAAGAGCAGGATGCCTTTTTCCTTTCTAAGCCCACACGAGTTCGTGGCACCATTT
292 -----------AAGAGCAGGATGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTT
* * * * *
1452562 AGTCCTTAAAAAG-AAGGATTCCTTTTTCATTTCAAAACTCACACGAGTTGGTGGTCCATTTTGT
346 AGTCCTCAAAAAGCAA-GATGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGG--CA------
** *
1452626 CCTCAAAGAGCAGGACAGCTTTTT
402 -C-C------C--TTCAG---TCT
* * *** * * ** * **
1452650 CTTTTCAAAGCCCATATGTGTAGTTGGTGCCCTTTAGTCCTCAAAGAGCAAGAAGTATTTTTCCT
1 CCTTTCAAAGCCCACACAAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAAGATGCCTTTTTCCT
* *
1452715 TTCAAAGCCCATA-GAAGTTGGTGGCACCCTTTAATCCTCAAAGAGCAGGATGCCTTTTTCCTTT
66 TTCAAAGCCCACACG-AGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTTTCCTTT
* *
1452779 CAAAGCCCGCACGAGTTTGTGGCACCCTTTAGTCCTCAAAGAGCAGGA-TGCC---TT--TTT--
130 CAAAGCCCACACGAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGACT-CCTTTTTCCTTTCA
* * * *
1452836 --G-----AC-------TGGCACCCGTTAGTCATCAAAGAGCAAGACGCCTTTTTCCTTTCAAAG
194 AAGCCCACACGAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGACGCCTTTTTCTTTTCAAAG
* * * * ** * *
1452887 CCCACAC-AGTTTGTGGAACCCTTTAGTCCTCTAAGAGCAAGACACCTTTTTCATTTCAAAGCCT
259 CCCACACAAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTTTCCTTTCAAAGCCC
* * * * * *
1452951 ACACGAGTTTGTGGCACCCTTTAGTTCTGAAAGAGCAGGATGCCTTTTTCTTTTCAAAGCCCACA
324 ACACGAGTTGGTGGCACCCTTTAGTCCTCAAAAAGCAAGATGCCTTTTTCCTTTCAAAGCCCACA
* * *
1453016 CGAGTTTGTGACACCCTTTAG--T
389 CGAGTTGGTGGCACCCTTCAGTCT
* * ******* * * ** *
1453038 -C-TTCAAAG---A-GCAAGATGCCCTTTTCCTTTCAATGCC-CACACGAG-TTGGTGGCACCCT
1 CCTTTCAAAGCCCACACAAGTTGGTGGCACCCTTT-AGT-CCTCA-AAGAGCAAGAT-G---CCT
* * *
1453095 TCAGTCTCCTTTCAAAGCCCACACAAGTTGGTGGCACCCTTTAGTCCTCAAAGAGAAGGATGCCT
59 T---TTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCT
* * * * * * * *
1453160 TTTTCCTTTCTAAGCCCACACGCGTTCGTGGCTCCATTTAGTCCTTAAAAAGCAGGATTCCTTTT
121 TTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGACTCCTTTT
* * * * * *
1453225 TCATTTCAAAACCCACACGAGTTGGTGG-TCCATTTTGTCCTCAAAGAGCAGGACACCTTTTTCT
186 TCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGACGCCTTTTTCT
*** * * * * **
1453289 TTTCAAAGCCCACAGGTGTTGTTGGTACCCTTTAGTCCTCAAAGAGCAAGACGTATTTTTCCTTT
251 TTTCAAAGCCCACACAAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTTTCCTTT
*
1453354 CAAAGCCCATA-GAAGTTGGTGGCACCCTTTAGTCCT-AAAAGAG-AAGGATGCCTTTTTCCTTT
316 CAAAGCCCACACG-AGTTGGTGGCACCCTTTAGTCCTCAAAA-AGCAA-GATGCCTTTTTCCTTT
*
1453416 CAAAGCCCGCACGAGTTGGTGGCACCCTTTAGTCCTCAAAAAGCAGGATGCCTTTCT
378 CAAAGCCCACACGAGTTGGTGGCACCC-----T--T-------C---A-G----TCT
* **
1453473 CCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCATCATGCC---TT--T
1 CCTTTCAAAGCCCACACAAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAAGATGCCTTTTTCCT
* * * *
1453533 TT----G-----A--A-----TGGCACCCTCTAGTCCTCAAAGAGCAAGACGCTTTTTTCCTTTC
66 TTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTTTCCTTTC
* * *
1453582 AAAGCCCACAC-AGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAAGACACCTTTTTCATTTCAAA
131 AAAGCCCACACGAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGACTCCTTTTTCCTTTCAAA
* * * * * *
1453646 GCCTACACGAGTTGTTGGCACCCTTTAGTCCTCGAAGAGTAGGACGCCTTTTTCCTTTCAAAGCT
196 GCCCACACGAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGACGCCTTTTTCTTTTCAAAGCC
* *
1453711 CACACAAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTATTTCATTTCAAAGCCCAC
261 CACACAAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTTTCCTTTCAAAGCCCAC
* * * * * * * *
1453776 ACGAGTTCGTGGCACCCTTTAGTCCTTAAAAACCAGGATGCCTTTTTCGTTTAAAAACCCACATG
326 ACGAGTTGGTGGCACCCTTTAGTCCTCAAAAAGCAAGATGCCTTTTTCCTTTCAAAGCCCACACG
* ** *
1453841 GGTTGGTGGTCCATTTTGTCCTCAAAGAGCAGGACACCTTTTT
391 AGTTGGTGG--CA------CC-C----TTCA-G-------TCT
* ** * * * **
1453884 CTTTTCAAAGCCCACACGTGTTGTTGGTACCCTTTAGTCCTCAAAGAGCAAGACGTATTTTTCCT
1 CCTTTCAAAGCCCACACAAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAAGATGCCTTTTTCCT
* *
1453949 TTCAAAGCCCATA-GAAGTTGGTGGCACCCTTTAGTCCTCAAAGAGAAGGATGCCTTTTTCCTTT
66 TTCAAAGCCCACACG-AGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTTTCCTTT
* *
1454013 CAAAGCCCGCACGAGTTGGTGGCACCCTTTAGTCCTCAAAAAGCAGGA-TGCCTTTTTCCTTTCA
130 CAAAGCCCACACGAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGACT-CCTTTTTCCTTTCA
* *
1454077 AAGCCCACACGAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGCATGCC----T-TTTT-----
194 AAGCCCACACGAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGACGCCTTTTTCTTTTCAAAG
* * *
1454132 -------AA----GTGGCACCCTTTAGTCCTCAAAGAGCAAGACGCCTTTTTCCTTTCGAAGCCC
259 CCCACACAAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTTTCCTTTCAAAGCCC
* ** * *
1454186 ACAC-AGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAAGACACCTTTTTCATTTCAAAGCCTACA
324 ACACGAGTTGGTGGCACCCTTTAGTCCTCAAAAAGCAAGATGCCTTTTTCCTTTCAAAGCCCACA
* *
1454250 CGAGTTGTTGCCACCCTTTAGTCCTCGAAGAGTAGGACACCTTTTT
389 CGAGTTGGTGGCACCC-----T--TC----AGT-------C----T
* * * *
1454296 CCTTTCAAAGCTCACACAAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTATTTCAT
1 CCTTTCAAAGCCCACACAAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAAGATGCCTTTTTCCT
* * * *
1454361 TTCAAAGCCCACACGAGTTCGTGGCACCCTTTAGTCCTTGAAA-ACCAGGATGCCTTTTTCGTTT
66 TTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGTCC-TCAAAGAGCAGGATGCCTTTTTCCTTT
* * * * * * * * * *
1454425 AAAATCCCACATGGGTTGGTGG-TCCATTTTGTCCTCAAACAGCAGGACACCTTTTTCTTTTCAA
130 CAAAGCCCACACGAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGACTCCTTTTTCCTTTCAA
* * * * ** *
1454489 AGCCCACACGTGTTGTTGGTACCCTTTAGTCCTCAAAGAGCAAGACGTATTTTTCCTTTCAAAGC
195 AGCCCACACGAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGACGCCTTTTTCTTTTCAAAGC
* * * *
1454554 CCATAGAAGTTGGTGGCACCCTTTAGTCCTCAAAGAGAAGGATGCCTTTTTCCTTTCAAAGCCCG
260 CCACACAAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTTTCCTTTCAAAGCCCA
*
1454619 CACGAGTTGGTGGCACCCTTTAGTCCTCAAAAAGCAGGATGCCTTTTTCCTTTCAAAGCCCACAC
325 CACGAGTTGGTGGCACCCTTTAGTCCTCAAAAAGCAAGATGCCTTTTTCCTTTCAAAGCCCACAC
*
1454684 GAGTTGGTGGCACCCTTTAG--T
390 GAGTTGGTGGCACCCTTCAGTCT
** *** * * **
1454705 CC--TCAAAGAGCAGCATGCCTTTTTAAGTGGCACCCTTTAGCCCTCAAAGAGCAAGACACCTTT
1 CCTTTCAAAGCCCA-CA---CAAGTT-GGTGGCACCCTTTAGTCCTCAAAGAGCAAGATGCCTTT
* * **
1454768 TTCCTTTCGAAGCCCACAC-AGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAAGACACCTTTTTC
61 TTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTTTC
* * * * ** * *
1454832 ATTTCAAAGCCTACACGAGTTGCTGGCACCCTTTAGTCATTGAAGAGTAGGACACCTTTTTCCTT
126 CTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGACTCCTTTTTCCTT
1454897 TCAAAGCCCACACGAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGG-CTGCCTTTTTCTTTTC
191 TCAAAGCCCACACGAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGAC-GCCTTTTTCTTTTC
* *
1454961 AAAGCCCACACAAGTTGGTGGCACCCTTTAGTCCTCAAAAATCAGGATGCCTTTTTCCTTTCAAA
255 AAAGCCCACACAAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTTTCCTTTCAAA
* * * * **
1455026 GCCCACACAAGTTTGTGGCACCCTTTAGTCCTTAAAGAGCAAGATGCCTTTTTCCTTTCAGCGCC
320 GCCCACACGAGTTGGTGGCACCCTTTAGTCCTCAAAAAGCAAGATGCCTTTTTCCTTTCAAAGCC
*
1455091 CACACGTGTTGGTGGCACCCTTCAGTCT
385 CACACGAGTTGGTGGCACCCTTCAGTCT
*
1455119 CCTTTCAAAGCCCACACAAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTTTCCT
1 CCTTTCAAAGCCCACACAAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAAGATGCCTTTTTCCT
* * * * * * * *
1455184 TTCTAAGCCCACACGAGTTCGTGGCACCATTTAGTCCTTAAAAAGCAAGATTCCTTTTTCATTTC
66 TTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTTTCCTTTC
* * * * * * *
1455249 AAAACCCACACGAGATGGTGG-TCCATTTTGTCCTCAAAGAGCAGGACACCTTTTTCTTTTCAAA
131 AAAGCCCACACGAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGACTCCTTTTTCCTTTCAAA
* * * * * * **
1455313 GCCCATACGTGTAGTTGGTACCCTTTAGTCCTCAAAGAGCAAGACGTATTTTTCTTTTCAAAGCC
196 GCCCACACGAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGACGCCTTTTTCTTTTCAAAGCC
* * * * * * *
1455378 CACAGAAGTTGATGGGACCCTTTAGTCCTCAAATAACAGGATGCCTTTTTCCTTTCGAAGCCCGC
261 CACACAAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTTTCCTTTCAAAGCCCAC
* * *
1455443 ACGAGTTGGTGGCACCCTTCAATCCTCAAAAAGCAGGATGCCTTTTTCCTTTCAAAGCCCACACG
326 ACGAGTTGGTGGCACCCTTTAGTCCTCAAAAAGCAAGATGCCTTTTTCCTTTCAAAGCCCACACG
* *
1455508 AGTTAGTGGCACCCTTTAG--T
391 AGTTGGTGGCACCCTTCAGTCT
** * *** **
1455528 CC--TCAAAGAGCAGGATGCCTTTTTGAGTGGCACCCTTTAGTCCGGAAAGAGCAAGATGCCTTT
1 CCTTTCAAAGCCCA-CA---CAAGTTG-GTGGCACCCTTTAGTCCTCAAAGAGCAAGATGCCTTT
* * * **
1455591 TTCCTTTCAAAGCCCACTC-AGTTGGTGGCACCCTTTAATCCTCAAAGAGCAAGACACCTTTTTC
61 TTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTTTC
* * * *
1455655 CTTTCAAAGCCTACACGAGTTGCTGGCACTCTTTAGTCCTCGAAGAGCAGGA-TGCCTTTTTCCT
126 CTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGACT-CCTTTTTCCT
* *
1455719 TTCAAAGCCCACACGAGTTGGTGGCACCTTTTAGTCCTCAAAGAGTAGGACGCCTTTTTCTTTTC
190 TTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGACGCCTTTTTCTTTTC
* * *
1455784 AAAGCTCATACAAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAA
255 AAAGCCCACACAAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTTTCCTTTCAAA
* * *
1455849 GCCCACACGAGTTTGTGGCACCCTTTAGTCCTCAAAGAGCAAGATGCCTTTTTCCTTTCAACGCC
320 GCCCACACGAGTTGGTGGCACCCTTTAGTCCTCAAAAAGCAAGATGCCTTTTTCCTTTCAAAGCC
* * *
1455914 CACTCGAGTTGATGGCACCCTTTAGTCT
385 CACACGAGTTGGTGGCACCCTTCAGTCT
* *
1455942 CCTTTCAAAACCCACACAAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTTTCCT
1 CCTTTCAAAGCCCACACAAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAAGATGCCTTTTTCCT
* * * * * * * *
1456007 TTCTAAGCCCACACGAGTTCGTGGCACCATTTAGTCCTTAAAAAGCAAGATTCCTTTTTCATTTC
66 TTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTTTCCTTTC
* * * * * * *
1456072 AAAACCCACACGAGATGGTGG-TCCATTTTGTCCTCAAAGAGCAGGACACCTTTTTCTTTTCAAA
131 AAAGCCCACACGAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGACTCCTTTTTCCTTTCAAA
* * * * * * * ** *
1456136 GCCCATACGTGTAGTTGGTACCCTTTAGTCCTCAAAGAGCAAGAAGTATTTTTCCTTTCAAAGCC
196 GCCCACACGAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGACGCCTTTTTCTTTTCAAAGCC
* * *
1456201 CATAGAAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTTTCCTTTCAAAGCCCGC
261 CACACAAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTTTCCTTTCAAAGCCCAC
* *
1456266 ACGAGTTGGTGGCACCCCTTAGTCCTCAAAAAGCAGGATGCCTTTTTCCTTTCAAAGCCCACACG
326 ACGAGTTGGTGGCACCCTTTAGTCCTCAAAAAGCAAGATGCCTTTTTCCTTTCAAAGCCCACACG
*
1456331 AGTTGGTGGCACCATTCAGTCT
391 AGTTGGTGGCACCCTTCAGTCT
* *
1456353 CCTTTCAAAGCCCACACAAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTTTCAT
1 CCTTTCAAAGCCCACACAAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAAGATGCCTTTTTCCT
* ** * * * *
1456418 TTCAAAGCTCACACGAGTTCATGGCACCCTTTAGTCCTTAAAAAGCAGGATGCCTTTTTCGTTTA
66 TTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTTTCCTTTC
* * * * * *
1456483 AAAACCCACATTG-GTTGGTGG-TCCATTTTGTCCTCAAAGAGCAGGACT-CTTTTTCTTTTCAA
131 AAAGCCCACA-CGAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGACTCCTTTTTCCTTTCAA
* * * * **
1456545 AACCCGCAC-ATGTTGTTGGCACCCTTTAGTCCTCAAAGAGCAAGACGTATTTTTCTTTTCAAAG
195 AGCCCACACGA-GTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGACGCCTTTTTCTTTTCAAAG
* * * * *
1456609 CCCACAGAAGTTGATGGGACCCTTTAGTCCTCAAATAGCAGGATGCCTTTTTCCTTTCGAAGCCC
259 CCCACACAAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTTTCCTTTCAAAGCCC
* * * *
1456674 GCACGAGTTGGTGGCACCCTTCAATCCTCAAAAAGCAGGATGCCTTTTTCCTTTCAAAGCCCACA
324 ACACGAGTTGGTGGCACCCTTTAGTCCTCAAAAAGCAAGATGCCTTTTTCCTTTCAAAGCCCACA
* *
1456739 CGAGTTAGTGGCACCCTTTAG--T
389 CGAGTTGGTGGCACCCTTCAGTCT
** * *** **
1456761 CC--TCAAAGAGCAGGATGCCTTTTTGAGTGGCACCCTTTAGTCCGGAAAGAGCAAGATGCCTTT
1 CCTTTCAAAGCCCA-CA---CAAGTTG-GTGGCACCCTTTAGTCCTCAAAGAGCAAGATGCCTTT
* * **
1456824 TTCCTTTCAAAGCCCACAC-AGTTGGTGGCACCCTTTAATCCTCAAAGAGCAAGACACCTTTTTC
61 TTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTTTC
* * * *
1456888 CTTTCAAAGCCTACACGAGTTGCTGGCACTCTTTAGTCCTCGAAGAGCAGGA-TGCCTTTTTCCT
126 CTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGACT-CCTTTTTCCT
* *
1456952 TTCAAAGCCCACACGAGTTGGTGGCACCTTTTAGTCCTCAAAGAGTAGGACGCCTTTTTCTTTTC
190 TTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGACGCCTTTTTCTTTTC
* * * *
1457017 AAAGCTCATACAAGTTGGTGGCACCCTTTAGTCCTCATAGAGCAGGACGCCTTTTTCCTTTCAAA
255 AAAGCCCACACAAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTTTCCTTTCAAA
* * *
1457082 GCCCACACGAGTTTGTGGCACCCTTTAGTCCTCAAAGAGCAAGATGCCTTTTTCCTTTCAACGCC
320 GCCCACACGAGTTGGTGGCACCCTTTAGTCCTCAAAAAGCAAGATGCCTTTTTCCTTTCAAAGCC
* * *
1457147 CACATGAGTTGATGGCACCCTTTAGTCT
385 CACACGAGTTGGTGGCACCCTTCAGTCT
* *
1457175 CCTTTCAAAACCCACACAAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTTTCCT
1 CCTTTCAAAGCCCACACAAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAAGATGCCTTTTTCCT
* * * * * * *
1457240 TTCTAAGCCCACACGAGTTCGTGGCACCATTTAGTCCTTAAAAAGCAGGATTCCTTTTTCATTTC
66 TTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTTTCCTTTC
* * * * * * *
1457305 AAAACCCACACGAGTTGGTGG-TCCATTTTGTCCTCAAAGAGCAAGACACCTTTTTCTTTTCAAA
131 AAAGCCCACACGAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGACTCCTTTTTCCTTTCAAA
* * * * * * * ** *
1457369 GCCCATACGTGTAGTTGGTACCCTTTAGTCCTCAAAGAGCAAGAAGTATTTTTCCTTTCAAAGCC
196 GCCCACACGAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGACGCCTTTTTCTTTTCAAAGCC
* * *
1457434 CATAGAAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTTTCCTTTCAAAGCCCGC
261 CACACAAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTTTCCTTTCAAAGCCCAC
*
1457499 ACGAGTTGGTGGCACCCTTTAGTCCTCAAAAAGCAGGATGCCTTTTTCCTTTCAAAGCCCACACG
326 ACGAGTTGGTGGCACCCTTTAGTCCTCAAAAAGCAAGATGCCTTTTTCCTTTCAAAGCCCACACG
* *
1457564 AGTTGGTGGAACCTTTTAGTCCTCAAAGAGTAGGACGCCTTTTT
391 AGTTGGTGGCACC-------CTTC----AGT-------C----T
* * * * *
1457608 CTTTTCAAAGCTCATACAAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGACGCCTTTTTCCT
1 CCTTTCAAAGCCCACACAAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAAGATGCCTTTTTCCT
* * * *
1457673 TTCAAAGCCCACACGAGTTTGTGGCACCCTTTAGTCCTTAAAAAGCAAGATGCCTTTTTCCTTTC
66 TTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTTTCCTTTC
*
1457738 AACGCCCACACGAGTTGGTGGCACCC-----T--T-------CA-G--T-C----TCCTTTCAAA
131 AAAGCCCACACGAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGACTCCTTTTTCCTTTCAAA
* * ** * * *
1457781 GCCCACACAAGTTGGTGGCACCCTTTATTTTTCAAAGAGCCGGATGCCTTTTTCCTTTCAAAGCC
196 GCCCACACGAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGACGCCTTTTTCTTTTCAAAGCC
* * * * * * *
1457846 CACACGAGTTGGTGACACCTTTTAGTCCTCAAAAAGTAGGATGCCTTTTTCGTTTCAAA-CCTAC
261 CACACAAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTTTCCTTTCAAAGCCCAC
* * * * * * * * * *
1457910 ACGGGTTAGTAGC-CTCATTTTGTCCTCAAAGAGTAGGACT-CCCTTTTCTTTTCAAAGCCCACA
326 ACGAGTTGGTGGCAC-CCTTTAGTCCTCAAAAAGCAAGA-TGCCTTTTTCCTTTCAAAGCCCACA
** *
1457973 CTTGTTGGCGGCACCCTTTAGTCCTCAATGAGTAGGACCCCTTTTT
389 CGAGTTGGTGGCACCC-----T--TC----AGT-------C----T
* * * * * * * * * *
1458019 CTTTTCAACGCCTACATAGGTTTGTGGCACCATTTAGTTCTGAAAGAGCAGGATGCCTTTTTCCT
1 CCTTTCAAAGCCCACACAAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAAGATGCCTTTTTCCT
* * * * * *
1458084 TTCAAAGCCCACATGAGTTTGTGGCACCCTTTAGCCCACAAAGAGCAAGACGCCTTTTTCCTTTC
66 TTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTTTCCTTTC
* *
1458149 AACGCCCACACGAGTTGGTGGCACCCTTCAGTCTCCTTTCAAAGCCCACACAAGTTGGTGGCACC
131 AAAGCCCACACGAGTTGGTGGCACCCTTTAG--TCC--TCAAAG--------A-------G---C
* * * * *
1458214 TTTTAGTCTTCAAAGAGCAGGATGCCTTTCTCCTTTCAAAGCCAACACGAGTTGGTGACATCTTT
174 ----AG--------GA-C----T-CCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTT
* ** * * * ** * *
1458279 TAGTCCTCAAAAAGCAGGTTGCCTTTTTCGTTTCAGA-CCTACACGGGTTGGTGGC-CTCATTTT
221 TAGTCCTCAAAGAGCAGGACGCCTTTTTCTTTTCAAAGCCCACACAAGTTGGTGGCAC-CCTTTA
* * * * * ** *
1458342 TTCCTCAAAGAGTAGGACT-CCTTTTTCTTTTTAAAGCCTACACTTGTTGGCGGCACCCTTTAGT
285 GTCCTCAAAGAGCAGGA-TGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGT
** * ** * * * *
1458406 CCTCAATGAGCAGGACCCCTTTTTCTTTTCAAAGCCTACTCGAGTTTGTGGCACCCTTTAGTTCT
349 CCTCAAAAAGCAAGATGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCC-----TTC-
1458471 GAAAGAGGAGGATGCCTTTTT
408 --------A-G-T--C----T
* * * *
1458492 CCTTTCAAAGCCCACACGAGTTTGTGGCACCCTTTAGTCCTCAAAGAGCATGATGCCCTTTTCCT
1 CCTTTCAAAGCCCACACAAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAAGATGCCTTTTTCCT
* * * * * *
1458557 TTCAATGCCCACACGTGTTGGTGGCACCATTCAGTCTCATTTCAAAGCCCACACAAGTTGGTGGC
66 TTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGTC-C---TCAAAG---A-GC-AG--GAT-G-
**
1458622 ACCCTTTTGTCCTCAAAGAGCAGGATACCTTTTTCATTCAAAGCCCACACGAGTTCATGGCACCC
118 --CC--TT-T--T------------T-CC----T--TTCAAAGCCCACACGAGTTGGTGGCACCC
* * * * * * * * * * *
1458687 TTTAGACCTTAAAAAGCAAGA-TGCCTTTTTCGTTTAAAAACCCACATGGGTTGGTGG-TCCATT
157 TTTAGTCCTCAAAGAGCAGGACT-CCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTT
* * *
1458750 TTGTCCTCAAAGAGCAGGA-GACCTTTTTCTTTTCAAAGCCCACACATGTTGTTGGCACCCTTTA
221 TAGTCCTCAAAGAGCAGGACG-CCTTTTTCTTTTCAAAGCCCACACAAGTTGGTGGCACCCTTTA
* * ** * * *
1458814 GTCCTCAAAGAGCAAGACGTATTTTTCTTTTCAAAGCCCACA-GAAGTTGATGGCACCCTTGAGT
285 GTCCTCAAAGAGCAGGATGCCTTTTTCCTTTCAAAGCCCACACG-AGTTGGTGGCACCCTTTAGT
* * * *
1458878 CCTCAAAGAGC-AGTGTGCCTTTTTCCTTTTAAAGCCCGCACGAGTTGGTGGCACCCTTCAGTCC
349 CCTCAAAAAGCAAG-ATGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTCAG---
1458942 TCAAAAAGCAGGAT
410 T-------C----T
* * * *
1458956 GCCTTTTTCCTTTTAAAGCCCACACGAGTTAGTGGCACCCTTTAGTCCTCAAAGAGTAGGATGCC
1 -CC--TTT-C----AAAGCCCACACAAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAAGATGCC
** * *
1459021 ---TT--TTT------------GA----GTGGCACCCTTTAGTCCGAAAAGAGCAAGACGCCTTT
58 TTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTT
** * * * * *
1459065 TTCCTTTCAAAGAGCACAC-AGTTGTTGGCAGCCTTTAATCCTCAAAGAGCAAGACACCTTTTTC
123 TTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGACTCCTTTTTC
* * * * *
1459129 CTTTCAAAGCCTACACGAGTTGCTGGCACCCTTTAGTCCTCGAAGAGCAGGATGCCTTTTTCCTT
188 CTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGACGCCTTTTTCTTT
* * * *
1459194 TCAAAGCCTACACGAGTTGGTGGCACCTTTTAGTCCTCAAAGAGCAGGATGCCTTTTTCTTTTCA
253 TCAAAGCCCACACAAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTTTCCTTTCA
* * * * * * *
1459259 AAGCTCATACAAGTTGGTGGCACCCTTTAGTCCTCATAGAGCAGGACGCCTTTTTCCTTTCAAAG
318 AAGCCCACACGAGTTGGTGGCACCCTTTAGTCCTCAAAAAGCAAGATGCCTTTTTCCTTTCAAAG
* * *
1459324 CCCACACGAGTTTGTGCCACCCTTTAG--T
383 CCCACACGAGTTGGTGGCACCCTTCAGTCT
* * * **** * * ** *
1459352 CC-TT-AAAG---A-GCAAGATGCCT-TTTTCCTTTCAATGCC-CACACGAG-TTGGTGGCACCC
1 CCTTTCAAAGCCCACACAAGTTG-GTGGCACCCTTT-AGT-CCTCA-AAGAGCAAGAT-G---CC
* * * * *
1459408 TTCAGTCTT-CTTTCAAAGCCCACACAAGTTGGTGGCACCCTTTATTTCTCGAAGAGCCGGATGC
58 TT---T-TTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGC
* * * *
1459472 CTTTTTCCTTTCAAAGCCCACACGAGTTGGTGACACCTTTTAGTCCTCAAAAAGTAGGA-TGCCT
119 CTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGACT-CCT
* * * * * * * * *
1459536 TTTTCGTTTCAAA-CCTACACGGGTCGGTAGC-CTCATTTTGTCCTCAAAGAGTAGGACTCCTTT
183 TTTTCCTTTCAAAGCCCACACGAGTTGGTGGCAC-CCTTTAGTCCTCAAAGAGCAGGACGCCTTT
** * * * ***
1459599 TTCTTTTCAAAGCCCACACTTGTTGGCGGCACCCTTTAGTCCTCAATGAGTAGGGCCCCTTTTTC
247 TTCTTTTCAAAGCCCACACAAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTTTC
* * * * * * * * * *
1459664 TTTTCAACGCCTACA-TAGGTTTGTGGCACCATTTAGTTCTGAAAGAGCAGGATGCCTTTTTCCT
312 CTTTCAAAGCCCACACGA-GTTGGTGGCACCCTTTAGTCCTCAAAAAGCAAGATGCCTTTTTCCT
* *
1459728 TTCAAAGCCCACACGAGTTTGTGGCACCCTTTAG--T
376 TTCAAAGCCCACACGAGTTGGTGGCACCCTTCAGTCT
* * * **** * ** *
1459763 CC--TCAAAG---A-GCAAGATGCCT-TTTTCCTTTCAACG-CC-CACACGAG-TTGGTGGCACC
1 CCTTTCAAAGCCCACACAAGTTG-GTGGCACCCTTT--A-GTCCTCA-AAGAGCAAGAT-G---C
* * *
1459818 CTTCAGTCTCCTTTCAAAGCCCACACAAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAAGATGC
57 CTT---TTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGC
* * * *
1459883 CTTTTTCCTTTCAAAGCCCACACGAGTTGGTGACACCTTTTAGTTCTCAAAAAGCAGGA-TGCCT
119 CTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGACT-CCT
* * * * * * **
1459947 TTTTCGTTTCAAA-CCTACACGGGTTGGTGGC-CTCATTTTGTCCTCAAAGAGTAGGATTCCTTT
183 TTTTCCTTTCAAAGCCCACACGAGTTGGTGGCAC-CCTTTAGTCCTCAAAGAGCAGGACGCCTTT
* ** ** * * **
1460010 TTCTTTTCAATGCCCACACTTGTTGGCAGCACCCTTTACTCCTCAATGAGCAGGACCCCTTTTTC
247 TTCTTTTCAAAGCCCACACAAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTTTC
* * * * *
1460075 TTTTCAAAGCCTACACGAGTTGGTGGCACCCTTCAGTCCTCAAAGAGCAGGATGCCTTTTTCCTT
312 CTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGTCCTCAAAAAGCAAGATGCCTTTTTCCTT
*
1460140 TCAAAGCCCGCACGAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTTT
377 TCAAAGCCCACACGAGTTGGTGGCACCC-----T--T-------CA-G-T--C----T
** * * * * * * * ***
1460198 CCTTTCAAAGCCCACACGGGTCGGTGGCTCCCGTTAGCCCTTAAAAAGAAAGGCACCTTTTTCCT
1 CCTTTCAAAGCCCACACAAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAAGATGCCTTTTTCCT
* * ** * * ** *
1460263 CTCAAAGCCCACATGAGTTGGCCGCACCCTTTAGCCCTCAAAGAGTAGGACACCTTTTTCTTTTC
66 TTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTTTCCTTTC
* * * ** * * *
1460328 AAAGTCGACACGTGTTGGTGGCTTCTTTTAGTCCTCAAAGAGAAGGA-TGCTATTTT-CTTTCAA
131 AAAGCCCACACGAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGACTCCT-TTTTCCTTTCAA
* * ** * * * * * * *
1460391 TGCCCAAACGAGTTGGTGGCATTCTTTTGT-CTGGAAAAAGCCGGACG-CTTCTTATTTTTAAAG
195 AGCCCACACGAGTTGGTGGCACCCTTTAGTCCT-CAAAGAGCAGGACGCCTTTTTCTTTTCAAAG
* *
1460454 CCCACACGAGTTGGTGGCACCCTTTAGTCCTCAAAGTATG--GGATGCCTTTTTCCATTCAAAGC
259 CCCACACAAGTTGGTGGCACCCTTTAGTCCTCAAAG-A-GCAGGATGCCTTTTTCCTTTCAAAGC
* * * * * *
1460517 CCACACGAGTTGGTGGCACTCTTTACTCCTCAAAGAGCCAGAAGCCTTTTTCTTTTCAAAGCCCA
322 CCACACGAGTTGGTGGCACCCTTTAGTCCTCAAAAAGCAAGATGCCTTTTTCCTTTCAAAGCCCA
*
1460582 CAC-AGGTTGGTGGTACCCTTTTGTTCTCAAAGAGTATGACACATTTTT
387 CACGA-GTTGGTGGCACCC------T-TC----AG--T----C-----T
* * * * * * **
1460630 CCTTTCAATGCCCACACGAGTTGGTGGCACTCTTTTGTCCTCAAAAAGCAGGACACCTTTTTCCT
1 CCTTTCAAAGCCCACACAAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAAGATGCCTTTTTCCT
* * * * *
1460695 TTCAAAGCTCACACGGGTTGGTGGCACCCTTTAGTCCACAAAGAGCAGGACGCCTTTTTCTTTTC
66 TTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTTTCCTTTC
* * * * * * * **
1460760 AGAG-CCAGATG-GATTGATGGCACCCTTTAGTCCACAAAAAGCAGTA-TGCCTTTTTTGTTTCA
131 AAAGCCCACACGAG-TTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGACT-CCTTTTTCCTTTCA
* * * * ** * * **
1460822 AAACACACACGGGTTGGTGGCTCTATTTTGTCCTCAAAGAGCAGGACACCTTTTTTCTTTTTGAA
194 AAGCCCACACGAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGACGCC-TTTTTCTTTTCAAA
** * * * **** * *
1460887 GCCCACATGTA-TTGGTGGCACCCTTTAGTCCTCAAAGTGTAAGACATATTTTTTCTTTTAAAGC
258 GCCCACA-CAAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTTTCCTTTCAAAGC
* * * * *
1460951 GCACACGAGTTGGTGGCACCCTTTTGTTCTCAAAGAGC-AGCATGCCTTTTTCCTTTCAAAGCTC
322 CCACACGAGTTGGTGGCACCCTTTAGTCCTCAAAAAGCAAG-ATGCCTTTTTCCTTTCAAAGCCC
*
1461015 GCACGAGTTGGTGGCACCCCTTAGTCCTTAGTGAGCTGGAAGCCTTTTT
386 ACACGAGTTGGTGGCA-CCC-T--T-C------AG-T------C----T
* * * * *
1461064 CCTTTCAAAGCCCACAC-CGTT-ATCGACACCCTTTAGTCCTCAAAAAGCAAGATGCCTTTTCCC
1 CCTTTCAAAGCCCACACAAGTTGGT-GGCACCCTTTAGTCCTCAAAGAGCAAGATGCCTTTTTCC
* * *
1461127 TTTCAAAGCCCACAC-AATTGGTGGCACCCTTTAGTCCTTAAAGAGCAGGATGCCTTTTTCTTTT
65 TTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTTTCCTTT
* * * * *
1461191 CAAAGCCCAGATGGGTTGGTGGCACCTTTTAGTCCTCAAAGAGCAAGA-TGCCTTTTTCCTTTCA
130 CAAAGCCCACACGAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGACT-CCTTTTTCCTTTCA
* * * * * *
1461255 AAGCCCACACGACTTGGTGGCACCCTTTAGTCCTTAAAAAGCAGGATGCCTTTTTCGTTTCAAAA
194 AAGCCCACACGAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGACGCCTTTTTCTTTTCAAAG
** * * * ** *
1461320 CCCACACGGGTTGGTGGCTCCATTTTA-TCCTCAAAGAGCATGACACCTTTTTCTTTTCAAAGCC
259 CCCACACAAGTTGGTGGCACC-CTTTAGTCCTCAAAGAGCAGGATGCCTTTTTCCTTTCAAAGCC
* * * * * **
1461384 CACACGTGTTGTTGGCACCCTTTAGTGCTCAAAGAGCAAGACGTATTTTTCCTTTCACAA-CCCA
323 CACACGAGTTGGTGGCACCCTTTAGTCCTCAAAAAGCAAGATGCCTTTTTCCTTTCA-AAGCCCA
**
1461448 CAAAAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGTCATTTT
387 CACGAGTTGGTGGCACCC-----T--T-------C---A-GTC----T
* * * * * *
1461496 CCTTTCAAAGCCCGCACGAGTTGATGGCACCCTTCAGTCCTCAAAAAGCAGGATGCCTTTTTCCT
1 CCTTTCAAAGCCCACACAAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAAGATGCCTTTTTCCT
* * * * *
1461561 TTCAAA-CCCAACAGGAATTAGTGGCACCCTTTAGTCCTCAATGATCAGGATGCC----T--TTT
66 TTCAAAGCCC-ACACGAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTTTCCTTT
* *
1461619 -----------CGAG-TGGT---ACCCTTTAGTCCTCAAAGAGCAAGACGCCTTTTTCCTTTCAA
130 CAAAGCCCACACGAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGACTCCTTTTTCCTTTCAA
* * * * * **
1461669 AGCCCACAC-AGTTGGTGGCACCGTTGAGTCCTCAAAGAACAAGACACCTTTTTCCCTTCAAAGC
195 AGCCCACACGAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGACGCCTTTTTCTTTTCAAAGC
* * * * * * ** *
1461733 CTACACGAGTTGTTGTCACCCTTTAGTCCTCGAAGAGTAGGACACTTTTTTCCTTTCAAAGCCCA
260 CCACACAAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTTTCCTTTCAAAGCCCA
* * * * * *
1461798 CACGAGTTGGTGGCACCCTTTAGTCCCCAAAGAGCAGGACGCCTTTTTCTTTTCAAAGCCCACAT
325 CACGAGTTGGTGGCACCCTTTAGTCCTCAAAAAGCAAGATGCCTTTTTCCTTTCAAAGCCCACAC
*
1461863 AAGTTGGTGGCACCCTTTAGTCCTCAAAGAGTAGGATGCCTTTTT
390 GAGTTGGTGGCACCC-----T--TC-------A-G-T--C----T
* * *
1461908 CCTTTCAAAGCCCATACGAGTTTGTGGCACCCTTTAGTCCTCAAAGAGCAAGATGCCTTTTTCCT
1 CCTTTCAAAGCCCACACAAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAAGATGCCTTTTTCCT
*
1461973 TTCAATGCCCACACGAGTTGGTGGCACCC-----T--T-------C-GG-T--C----TCCTTTC
66 TTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTTTCCTTTC
* *
1462016 AAAGCCCACACTAGTTGGTGGCACCCTTCT-GTCCCCAAAGAGCAGGA-TGCCTTTTTCCTTTCA
131 AAAGCCCACACGAGTTGGTGGCACCCTT-TAGTCCTCAAAGAGCAGGACT-CCTTTTTCCTTTCA
* * * * ** *
1462079 AAGCCCACACAAGTTGGTGGCACCTTTTAGTCCTTAAAGAGCACGACTACTTTTTCCTTTCAAAG
194 AAGCCCACACGAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGACGCCTTTTTCTTTTCAAAG
* ** *
1462144 CCCACAC-AGTTGGTGGCACCCTTTAGTCTTCAAAGAGCAGGACACCTTTTTCCTTTCAAAACCC
259 CCCACACAAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTTTCCTTTCAAAGCCC
* * ** *
1462208 ACATGAGTTGGTGGCACCCTTTAGTCCTTAAAGTGCAGGATGCCTTTTTCCTTTCAAAGCCCACA
324 ACACGAGTTGGTGGCACCCTTTAGTCCTCAAAAAGCAAGATGCCTTTTTCCTTTCAAAGCCCACA
* ** * * *
1462273 CGGGTAGATGGCTCCCTTTAGCCCTCAAAAAGCCAGACA
389 C--G-AGTTGG-TGGC---A-CCCT-------TCAGTCT
* * * * * * * * * *
1462312 CCTTTTTCTTTTTAAAGGCCACACGAGTCGGTGGCTCTCTTTTGTCCTTAAAGTGTAGGATGCCT
1 CC--TTTC-----AAAGCCCACACAAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAAGATGCCT
* * * *
1462377 TTTTTCTTTCAAAGTCCACACGAGTTGGAGGCACCCTTTAGTCCTCAAAGAG-TGAGATGCCTTT
59 TTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAG-GATGCCTTT
* * * *
1462441 TTCATTTCAAAGCCCACATGAGTTGCTGGCACCCTTTAGTCCTCAAAGAGGAGGACGT-CTTTTT
123 TTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGAC-TCCTTTTT
* ** * * * ** * * *
1462505 CCATT-AGAAGGGCAAATGATTTGGTGGCATTCTTTAGTCCTCAATGAGCAGGATGCTTTTTTC-
187 CCTTTCA-AAGCCCACACGAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGACGCCTTTTTCT
* * ** * * **
1462568 TTTCAAAGCCCAAACGAGTTGGTGGCATTCTTTTGTCCTCAAAGAGTAGGACACCTTTTTCCTTT
251 TTTCAAAGCCCACACAAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTTTCCTTT
* * * ** * *
1462633 CAAAGCCCACATGAGTTGGTGGCACCCTTTACTCCTCAAAGAGCCGGAAGCCTTTTTCTTTTCAA
316 CAAAGCCCACACGAGTTGGTGGCACCCTTTAGTCCTCAAAAAGCAAGATGCCTTTTTCCTTTCAA
* * * ** * *
1462698 ACCCCGCACGGGTTGGTCACACCATTTTATCCTCAAAGAGAGTGAT
381 AGCCCACACGAGTTGGTGGCACC-------CTTC------AGT-CT
* * * * *
1462744 GCCTTTTTCTTTTAAAAGCCCACACGAGTTGGTGGCACCCTCTACTCCTTAAAGAGCAGGATGCC
1 -CC--TTTC-----AAAGCCCACACAAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAAGATGCC
* *
1462809 TTTTTCCTTTCAAAGCCCACACGTGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAAGACATG--T
58 TTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGTCCTCAAAGAGC-AG-GATGCCT
* * ** * *
1462872 TTTTCCTTTTAAAGCCCACACGGGTTGGTGGCACCCTTTTTTCCTTAAAGAGTAGGACAT-CTTT
121 TTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGAC-TCCTTT
* * * *
1462936 TTCCTTTCAATA-CCCACACGAGTTGGTGTCACTCTTTAGTCCTCAAAGCA-TAGGACACCTTTT
185 TTCCTTTCAA-AGCCCACACGAGTTGGTGGCACCCTTTAGTCCTCAAAG-AGCAGGACGCCTTTT
** * * * * *
1462999 TCCATTCAAAGGCCACA-AGGGTTGGTGGCACCTTTTAGTCCACAAAGAGCAGGACGCCTTTTTC
248 TCTTTTCAAAGCCCACACA-AGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTTTC
* * * * *
1463063 TTTTCAAAGCCCAGA-TAGGTTGGTGGCACCCTTTAGTCCTTAAAGAGC-AGCATGCCTTTTTCC
312 CTTTCAAAGCCCACACGA-GTTGGTGGCACCCTTTAGTCCTCAAAAAGCAAG-ATGCCTTTTTCC
*
1463126 TTTCAAAGCCCACACGAGTTGGTGGCACCTTTAGTCCTCAAAAAGCAAGATCCTTTT
375 TTTCAAAGCCCACACGAGTTGGTGGCA-C------CCT------TC-AG-T-C---T
* * ** * * * * * ** *
1463183 CTCGTTTAAAAGCCTACACGGGTTGGTAGC-CTCATTTTGTCCTCAAAGAGTAGGACACTTTTTT
1 C-C-TTTCAAAGCCCACACAAGTTGGTGGCAC-CCTTTAGTCCTCAAAGAGCAAGATGCCTTTTT
* * * * * ** * *
1463247 CTTTTCAAAGCCCACACAAGTTTGTGACACTCTTTAGTTTTCAAATAGCAGGATACCTTTTTCCT
63 CCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTTTCCT
** * * *
1463312 TTCAAAGCCCACGTGAGTTGGTGGCACCCTTCAGTCCTCAAAGAGCAGGACACTTTTTTCCTTTC
128 TTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGACTCCTTTTTCCTTTC
* * * *
1463377 AAAGCCCACAAGAGTTGGTGGCACCCTTTAGTCCTCGAAGAGCAGGATGCCTTTTTCCTTTCAAA
193 AAAGCCCACACGAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGACGCCTTTTTCTTTTCAAA
* ** * * ** * *
1463442 GCCCATACAAGTTGGCCGCACCCTTTAGTCCTCGAAGAGCAAGACACCTTTTTCTTTTCAAAGCA
258 GCCCACACAAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTTTCCTTTCAAAGCC
* * * * * ** * *
1463507 AACACGAGTTGGTGGCACCCTTTAGTCCTCGAAGAGGAGGACACCTTTTTCCCTTCAAAGCCCAA
323 CACACGAGTTGGTGGCACCCTTTAGTCCTCAAAAAGCAAGATGCCTTTTTCCTTTCAAAGCCCAC
* * * *
1463572 ACGAGTTGATGACATTCTTTTGTCTTGAAAGAGCAGGACACTTTTT
388 ACGAGTTGGTGGCA--C-----CCTT-------CA-G------TCT
* * * * *
1463618 TCTTCTCAAAACCCAC-CTGAGTTGGTGACACCCTTTAGTCCTCAAAGAGTC-AGATGTCTTTTT
1 CCTT-TCAAAGCCCACAC-AAGTTGGTGGCACCCTTTAGTCCTCAAAGAG-CAAGATGCCTTTTT
* * * * * * * **
1463681 CCTTTCAAAACCCACATGGGTTGG-CG-ACCTCATTTTGTCCTTAAAGAGTAGGAAACCTTTTTC
63 CCTTTCAAAGCCCACACGAGTTGGTGGCACC-C-TTTAGTCCTCAAAGAGCAGGATGCCTTTTTC
* * * * * *
1463744 TTTTCAAAGCCTACACGTGTTGGTGGCACCCTTTAGTCCTCAATGAGCAAGACGCCTTTTTCCTT
126 CTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGACTCCTTTTTCCTT
* * * * * * *
1463809 TCAAAGTCCATACGAGTTTGTGGCACCCTTTAGTTCTTAAAGAGCAGGATGCCTTTTTCCTTTCA
191 TCAAAGCCCACACGAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGACGCCTTTTTCTTTTCA
*** * * * ** * *
1463874 AAGCCCACGTGAGTTAGTGGCACCCTTCAGTCCCTCAAAAAGTGGGACGCC-TTTTCTTTTCAAA
256 AAGCCCACACAAGTTGGTGGCACCCTTTAGT-CCTCAAAGAGCAGGATGCCTTTTTCCTTTCAAA
* * * * * * *
1463938 GCCCATACAAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGACGCCTTTTCCCTTTCAAATCC
320 GCCCACACGAGTTGGTGGCACCCTTTAGTCCTCAAAAAGCAAGATGCCTTTTTCCTTTCAAAGCC
* * * *
1464003 CACATGGGTCGGTGGCTCCCGTTAGCCCTCAAAACGTAGGACACCTTTTT
385 CACACGAGTTGGTGGCACCC--T-----TC---A-GT-------C----T
** * * * * * *
1464053 CCTTTCAAAGCCCACATGAGTTGGTCGCTCCCTTTAGCCCACAAAGAGCATGATGCCTTTTTCTT
1 CCTTTCAAAGCCCACACAAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAAGATGCCTTTTTCCT
* * * * * *
1464118 TTCAAAGCCCAGATGGGTTGGTGGCACCCTTTAGTCCTTAAAGAGTAGGATGCCTTTTTCTTTTC
66 TTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTTTCCTTTC
* * ** *
1464183 AAAGCCCACACGAGTTGGTGGCACCCTTTAGTCCTCAAAAAGCAAG-CTGCCTTTTTTGTTTTAA
131 AAAGCCCACACGAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGACT-CCTTTTTCCTTTCAA
* * * * * * * *
1464247 AACCCACACGGGTTGGCGGC-CTCATTTTGTCCTCAAAAAGTAGGACACCTTTTTTCTTTTCAAA
195 AGCCCACACGAGTTGGTGGCAC-CCTTTAGTCCTCAAAGAGCAGGACGCC-TTTTTCTTTTCAAA
** ** * * * * *
1464311 GGTCACACGTGTTGGTGGAACCTTTTAGTCCTCAATGAGCAGGACGCCTTTTTCCTTTTAAAGCC
258 GCCCACACAAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTTTCCTTTCAAAGCC
* * * ** * *
1464376 TACAGGAG-TGTGTGACACCCTTTAGTTTTCAAAGAGCAGGATGCCTTTTTCCTTTCAAAGCCCA
323 CACACGAGTTG-GTGGCACCCTTTAGTCCTCAAAAAGCAAGATGCCTTTTTCCTTTCAAAGCCCA
**
1464440 TGCGAGTTGGTGGCACCCTTCAGTCCTCAAAGAGTAGGACACTTTTTT
387 CACGAGTTGGTGGCA-CC--C--T--TC----AGT------C-----T
* * * * *
1464488 CCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGTCCTCGAAGAGTAGGACGCCTTTTTCCT
1 CCTTTCAAAGCCCACACAAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAAGATGCCTTTTTCCT
** * * * * *
1464553 TTCAAAGCCCACGTGAGTTGGTGACA-CCTTTAAGTCCTCAAAGAGGAGGACGCCCTTTTCTTTT
66 TTCAAAGCCCACACGAGTTGGTGGCACCCTTT-AGTCCTCAAAGAGCAGGATGCCTTTTTCCTTT
* * * * * * *
1464617 TAAAGCCCACACAAGTTGGTGGCACCCTCTAGTCCTCAAAAAACAAGACGCCTTTTTCCTTAT-A
130 CAAAGCCCACACGAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGACTCCTTTTTCCTT-TCA
* * * * * * * * * * * * *
1464681 AATCCCATAGGGGTCGATGGCTCCCGTTAGCCCTCAAAAAGTAGGACACCTTTTTCCTTTCAAAG
194 AAGCCCACACGAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGACGCCTTTTTCTTTTCAAAG
* ** * * * * *
1464746 CCCACACGAGTTGGTCACTCCCTTTAGTCCACAAAGAGCATGATGCCTTTTTCTTTTCAAAGCCT
259 CCCACACAAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTTTCCTTTCAAAGCCC
* * * * * * * ** *
1464811 AGATGGGTTGGTGGCACCCTTTAGTCCTTAAAGAGTAGGATGTTTTTTTCTTTTCAAAGCCCACA
324 ACACGAGTTGGTGGCACCCTTTAGTCCTCAAAAAGCAAGATGCCTTTTTCCTTTCAAAGCCCACA
*
1464876 CTGAGTTGGTGGCACCCTTTAGTCCT
389 C-GAGTTGGTGGCACCCTTCAGT-CT
* * ** * * * *
1464902 CAAAAAGCAGGATGCTTTTTTTGTTTTAAAACCCACACGGGTTAGCGGC-CTCATTTTGTCCTCA
1 -------C------C--------TTTCAAAGCCCACACAAGTTGGTGGCAC-CCTTTAGTCCTCA
* * ** * * * * * * *
1464966 AAGAGTAGGACACCTTTTTCTTTTCAAAGGCCAGACGTGTTGGTGGCACCTTTTAGTTCTCAATG
44 AAGAGCAAGATGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGTCCTCAAAG
* * * * * **
1465031 AGCAGGACT-CCTTTTTCCTTTTAAAGTCTACACGAGTTTGTGTCACCCTTTAGTTTTCAAAGAG
109 AGCAGGA-TGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGTCCTCAAAGAG
* *
1465095 TAGGA-TGCCTTTTTCCTTTCAAAGCCCA-AGCGAGTTGGTGGCACCCTTCAGTCCTCAAAGAGC
173 CAGGACT-CCTTTTTCCTTTCAAAGCCCACA-CGAGTTGGTGGCACCCTTTAGTCCTCAAAGAGC
* * * * * * * *
1465158 AGGACACCTTTTTCCTTTCAAAGCCCGCACGAGTTGGTGGCACCTTTTAGTCTTCGAAGAGCATG
236 AGGACGCCTTTTTCTTTTCAAAGCCCACACAAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGG
** * ** * * * *
1465223 ATGCC-TTTTCCTTTTGAAGCCCACACGAGTTAGTGGCTTCCTTCAATCCTCAAAGAGCAGGATG
301 ATGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGTCCTCAAAAAGCAAGATG
* * *
1465287 CCTTTTTCCTTTCACATCCCACAC-AGTTAGTGGCACCCTTTAGTCCTCAAAGAGCAAGATGCCA
366 CCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCC-----T--T-------C-AG-T--C-
1465351 TTT
412 --T
* * *
1465354 CCCTTTTAAAGCCCACA-TAGTTGGTGGTGGCACCCTTTAGTCCTCTAAGAGCAAGATGCCTTTT
1 -CCTTTCAAAGCCCACACAAG-T--TGGTGGCACCCTTTAGTCCTCAAAGAGCAAGATGCCTTTT
* * * * * * * *
1465418 TCTTTTCAGAGCCTAGA-TAGGTTAGTGGCACCCTTTAGTCCTCAAAGAGCAAGTTGCCTTTTTC
62 TCCTTTCAAAGCCCACACGA-GTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTTTC
* * * * *
1465482 CTTTCAAAGACCACACGAGTTGGTGGCACCCTTTAGTCCTTAAAAAGTAGGA-TGCCTTTTTCGT
126 CTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGACT-CCTTTTTCCT
* * * * * * * *
1465546 TTCAAAACCCACACGGGTTGGTGGCTCCATTTTGTCCTTAAAGAGTAGGACACCTTTTTCTTTTC
190 TTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGACGCCTTTTTCTTTTC
* * * * * **
1465611 AAACCCCACACATGTTGGTGGCACCCTTTAGTCCTCAAAAAGCAAGACGTATTTTTCCTTTCAAA
255 AAAGCCCACACAAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTTTCCTTTCAAA
* * * * *
1465676 GCCCACACAAGTTTGTGGCACCCTTTAGTCCTCAAAGAGTAGGATGCCTTTTTCCTTTCAAAG
320 GCCCACACGAGTTGGTGGCACCCTTTAGTCCTCAAAAAGCAAGATGCCTTTTTCCTTTCAAAG
1465739 TCTACGCTTG
Statistics
Matches: 14246, Mismatches: 2703, Indels: 2148
0.75 0.14 0.11
Matches are distributed among these distances:
382 23 0.00
383 33 0.00
384 24 0.00
385 10 0.00
386 19 0.00
387 14 0.00
388 12 0.00
389 3 0.00
390 227 0.02
391 464 0.03
392 54 0.00
393 6 0.00
394 14 0.00
395 35 0.00
396 8 0.00
397 2 0.00
398 2 0.00
399 1 0.00
401 2 0.00
402 5 0.00
403 13 0.00
404 7 0.00
405 4 0.00
406 12 0.00
407 54 0.00
408 27 0.00
409 32 0.00
410 540 0.04
411 4050 0.28
412 2784 0.20
413 293 0.02
414 48 0.00
415 21 0.00
416 56 0.00
417 13 0.00
418 27 0.00
419 34 0.00
420 14 0.00
421 2 0.00
422 6 0.00
424 6 0.00
425 9 0.00
426 8 0.00
427 10 0.00
428 18 0.00
429 15 0.00
430 13 0.00
431 65 0.00
432 776 0.05
433 1365 0.10
434 1242 0.09
435 674 0.05
436 25 0.00
437 15 0.00
438 10 0.00
439 21 0.00
440 15 0.00
441 20 0.00
442 1 0.00
443 1 0.00
444 2 0.00
446 1 0.00
447 7 0.00
448 1 0.00
449 2 0.00
450 1 0.00
451 32 0.00
452 53 0.00
453 93 0.01
455 3 0.00
457 1 0.00
458 1 0.00
459 3 0.00
460 1 0.00
462 1 0.00
463 1 0.00
464 3 0.00
465 2 0.00
467 10 0.00
468 4 0.00
469 4 0.00
470 3 0.00
471 39 0.00
472 235 0.02
473 357 0.03
474 4 0.00
476 5 0.00
477 7 0.00
478 11 0.00
480 1 0.00
481 1 0.00
482 1 0.00
484 1 0.00
485 1 0.00
486 1 0.00
488 2 0.00
490 3 0.00
491 1 0.00
493 2 0.00
500 1 0.00
505 1 0.00
506 2 0.00
508 4 0.00
510 3 0.00
512 30 0.00
ACGTcount: A:0.24, C:0.27, G:0.19, T:0.30
Consensus pattern (412 bp):
CCTTTCAAAGCCCACACAAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAAGATGCCTTTTTCCT
TTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTTTCCTTTC
AAAGCCCACACGAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGACTCCTTTTTCCTTTCAAA
GCCCACACGAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGACGCCTTTTTCTTTTCAAAGCC
CACACAAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTTTCCTTTCAAAGCCCAC
ACGAGTTGGTGGCACCCTTTAGTCCTCAAAAAGCAAGATGCCTTTTTCCTTTCAAAGCCCACACG
AGTTGGTGGCACCCTTCAGTCT
Found at i:1449766 original size:102 final size:102
Alignment explanation
Indices: 1449588--1449780 Score: 287
Period size: 102 Copynumber: 1.9 Consensus size: 102
1449578 GCCTTTTTCT
* * * *
1449588 TTTCAAAGCCCACACGAGTTTGTGACACCCTTTAGTCCTCAAAGAGCAAGATGCCCTTTTCCTTT
1 TTTCAAAGCCCACACAAGTTGGTGACACCCTTTAGTCCTCAAAAAGCAAGATGCCCTTTTCATTT
* **
1449653 CAATGCCCACACGAGTTGGTGGCACCATTCAGTCTCC
66 CAAAGCCCACACGAGTTCATGGCACCATTCAGTCTCC
* * *
1449690 TTTCAAAGCCCACACAAGTTGGTGGCACCCTTTAGTCCTCAAAAAGCAGGATGCCTTTTTCATTT
1 TTTCAAAGCCCACACAAGTTGGTGACACCCTTTAGTCCTCAAAAAGCAAGATGCCCTTTTCATTT
*
1449755 CAAAGCTCACACGAGTTCATGGCACC
66 CAAAGCCCACACGAGTTCATGGCACC
1449781 CTTTAGTCCT
Statistics
Matches: 80, Mismatches: 11, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
102 80 1.00
ACGTcount: A:0.25, C:0.30, G:0.18, T:0.27
Consensus pattern (102 bp):
TTTCAAAGCCCACACAAGTTGGTGACACCCTTTAGTCCTCAAAAAGCAAGATGCCCTTTTCATTT
CAAAGCCCACACGAGTTCATGGCACCATTCAGTCTCC
Found at i:1449787 original size:62 final size:62
Alignment explanation
Indices: 1449690--1450120 Score: 478
Period size: 62 Copynumber: 7.0 Consensus size: 62
1449680 TTCAGTCTCC
* * *
1449690 TTTCAAAGCCCACACAAGTTGGTGGCACCCTTTAGTCCTCAAAAAGCAGGATGCCTTTTTCA
1 TTTCAAAGCCCACACGAGTTGATGGCACCCTTTAGTCCTCAAAAAGCAGGATGCCTTTTTCT
* * * * *
1449752 TTTCAAAGCTCACACGAGTTCATGGCACCCTTTAGTCCTTAAAATGCAGGATGCCTTTTTCG
1 TTTCAAAGCCCACACGAGTTGATGGCACCCTTTAGTCCTCAAAAAGCAGGATGCCTTTTTCT
* * * * * * * * **
1449814 TTTAAAAACCCACATTG-GTTGGTGG-TCCATTTTGTCCTCAAAGAGCAGGACACCTTTTTCT
1 TTTCAAAGCCCACA-CGAGTTGATGGCACCCTTTAGTCCTCAAAAAGCAGGATGCCTTTTTCT
* * * * * **
1449875 TTTCAAAGCCCGCAC-ATGTTGTTGGCACCCTTTAGTCCTCAAAGAGCAAGACGTATTTTTCT
1 TTTCAAAGCCCACACGA-GTTGATGGCACCCTTTAGTCCTCAAAAAGCAGGATGCCTTTTTCT
* *
1449937 TTTCAAAGCCCACA-GAAGTTGATGGGACCCTTTAGTCCTCAAATAGCAGGATGCCTTTTT-T
1 TTTCAAAGCCCACACG-AGTTGATGGCACCCTTTAGTCCTCAAAAAGCAGGATGCCTTTTTCT
* * * * *
1449998 CTTTCGAAGCCCGCACGAGTTGGTGGCACCCTTCAGTCCTCAAAAAGCAGGATGCCTTTTTCC
1 -TTTCAAAGCCCACACGAGTTGATGGCACCCTTTAGTCCTCAAAAAGCAGGATGCCTTTTTCT
*
1450061 TTTCAAAGCCCACACGAGTT-AGTGTCACCCTTTAGTCCTCAAAAAGCAGGATGCCTTTTT
1 TTTCAAAGCCCACACGAGTTGA-TGGCACCCTTTAGTCCTCAAAAAGCAGGATGCCTTTTT
1450121 GAGTGGCACC
Statistics
Matches: 305, Mismatches: 54, Indels: 20
0.80 0.14 0.05
Matches are distributed among these distances:
61 46 0.15
62 256 0.84
63 3 0.01
ACGTcount: A:0.25, C:0.26, G:0.19, T:0.30
Consensus pattern (62 bp):
TTTCAAAGCCCACACGAGTTGATGGCACCCTTTAGTCCTCAAAAAGCAGGATGCCTTTTTCT
Found at i:1449838 original size:164 final size:164
Alignment explanation
Indices: 1449526--1449827 Score: 426
Period size: 164 Copynumber: 1.8 Consensus size: 164
1449516 TCCTTTTTCT
* * * * * * *
1449526 TTTCAAAGCCTACACGAGTTTGTGGCACCCTTTAGTTCTGAAAGAGCAGGATGCCTTTTTCTTTT
1 TTTCAAAGCCCACACAAGTTGGTGGCACCCTTTAGTCCTCAAAAAGCAGGATGCCTTTTTCATTT
** *
1449591 CAAAGCCCACACGAGTTTGTGACACCCTTTAGTCCTCAAAGAGCAAGATGCCCTTTTCCTTTCAA
66 CAAAGCCCACACGAGTTCATGACACCCTTTAGTCCTCAAAGAGCAAGATGCCCTTTTCCTTTAAA
**
1449656 TGCCCACACGAGTTGGTGGCACCATTCAGTCTCC
131 AACCCACACGAGTTGGTGGCACCATTCAGTCTCC
1449690 TTTCAAAGCCCACACAAGTTGGTGGCACCCTTTAGTCCTCAAAAAGCAGGATGCCTTTTTCATTT
1 TTTCAAAGCCCACACAAGTTGGTGGCACCCTTTAGTCCTCAAAAAGCAGGATGCCTTTTTCATTT
* * * * * *
1449755 CAAAGCTCACACGAGTTCATGGCACCCTTTAGTCCTTAAA-ATGCAGGATGCCTTTTTCGTTTAA
66 CAAAGCCCACACGAGTTCATGACACCCTTTAGTCCTCAAAGA-GCAAGATGCCCTTTTCCTTTAA
1449819 AAACCCACA
130 AAACCCACA
1449828 TTGGTTGGTG
Statistics
Matches: 119, Mismatches: 18, Indels: 2
0.86 0.13 0.01
Matches are distributed among these distances:
163 1 0.01
164 118 0.99
ACGTcount: A:0.25, C:0.27, G:0.18, T:0.29
Consensus pattern (164 bp):
TTTCAAAGCCCACACAAGTTGGTGGCACCCTTTAGTCCTCAAAAAGCAGGATGCCTTTTTCATTT
CAAAGCCCACACGAGTTCATGACACCCTTTAGTCCTCAAAGAGCAAGATGCCCTTTTCCTTTAAA
AACCCACACGAGTTGGTGGCACCATTCAGTCTCC
Found at i:1450131 original size:41 final size:41
Alignment explanation
Indices: 1450081--1450161 Score: 117
Period size: 41 Copynumber: 2.0 Consensus size: 41
1450071 CACACGAGTT
* * *
1450081 AGTGTCACCCTTTAGTCCTCAAAAAGCAGGATGCCTTTTTG
1 AGTGGCACCCTTTAGTCCGCAAAAAGCAAGATGCCTTTTTG
* *
1450122 AGTGGCACCCTTTAGTCCGGAAAGAGCAAGATGCCTTTTT
1 AGTGGCACCCTTTAGTCCGCAAAAAGCAAGATGCCTTTTT
1450162 CCTTTCAAAG
Statistics
Matches: 35, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
41 35 1.00
ACGTcount: A:0.25, C:0.23, G:0.22, T:0.30
Consensus pattern (41 bp):
AGTGGCACCCTTTAGTCCGCAAAAAGCAAGATGCCTTTTTG
Found at i:1450193 original size:61 final size:62
Alignment explanation
Indices: 1450123--1450408 Score: 382
Period size: 62 Copynumber: 4.6 Consensus size: 62
1450113 GCCTTTTTGA
** *
1450123 GTGGCACCCTTTAGTCCGGAAAGAGCAAGATGCCTTTTTCCTTTCAAAGCCCACAC-AGTTG
1 GTGGCACCCTTTAGTCCTCAAAGAGCAAGATGCCTTTTTCCTTTCAAAGCCCACACGAATTG
* * ** *
1450184 GTGGCACCCTTTAATCCTCAAAGAGCAAGACGTATTTTTCCTTTCAAAGCCCATA-GAAGTTG
1 GTGGCACCCTTTAGTCCTCAAAGAGCAAGATGCCTTTTTCCTTTCAAAGCCCACACGAA-TTG
* * *
1450246 GTGGTACCCTTTAGTTCTCAAAGAG-AAGGATGCCTTTTTCCTTTCAAAGCCCGCACGAATTG
1 GTGGCACCCTTTAGTCCTCAAAGAGCAA-GATGCCTTTTTCCTTTCAAAGCCCACACGAATTG
* * **
1450308 GTGGCACTCTTTAGTCCTCAAAAAGCTGGATGCCTTTTTCCTTTCAAAGCCCACACGAATTG
1 GTGGCACCCTTTAGTCCTCAAAGAGCAAGATGCCTTTTTCCTTTCAAAGCCCACACGAATTG
1450370 GTGGCACCCTTTAGTCCTCAAAGAGC-AGCATGCCTTTTT
1 GTGGCACCCTTTAGTCCTCAAAGAGCAAG-ATGCCTTTTT
1450409 AAGTGGCACC
Statistics
Matches: 193, Mismatches: 26, Indels: 11
0.84 0.11 0.05
Matches are distributed among these distances:
61 52 0.27
62 138 0.72
63 3 0.02
ACGTcount: A:0.25, C:0.26, G:0.20, T:0.29
Consensus pattern (62 bp):
GTGGCACCCTTTAGTCCTCAAAGAGCAAGATGCCTTTTTCCTTTCAAAGCCCACACGAATTG
Found at i:1450235 original size:164 final size:164
Alignment explanation
Indices: 1449955--1450284 Score: 432
Period size: 164 Copynumber: 2.0 Consensus size: 164
1449945 CCCACAGAAG
* * * * * * *
1449955 TTGATGGGACCCTTTAGTCCTCAAATAGCAGGATGCCTTTTTTCTTTCGAAGCCCGCACGAGTTG
1 TTGATGGCACCCTTTAGTCCGCAAAGAGCAAGATGCCTTTTTCCTTTCAAAGCCCACACGAGTTG
* * * *
1450020 GTGGCACCCTTCAGTCCTCAAAAAGCAGGATGCCTTTTTCCTTTCAAAGCCCACACG-AGTTAGT
66 GTGGCACCCTTCAATCCTCAAAAAGCAAGACGCATTTTTCCTTTCAAAGCCCACA-GAAGTTAGT
*
1450084 -GTCACCCTTTAGTCCTCAAAAAGCAGGATGCCTTT
130 GGT-ACCCTTTAGTCCTCAAAAAGAAGGATGCCTTT
*
1450119 TTGAGTGGCACCCTTTAGTCCGGAAAGAGCAAGATGCCTTTTTCCTTTCAAAGCCCACAC-AGTT
1 TTGA-TGGCACCCTTTAGTCCGCAAAGAGCAAGATGCCTTTTTCCTTTCAAAGCCCACACGAGTT
* * * * *
1450183 GGTGGCACCCTTTAATCCTCAAAGAGCAAGACGTATTTTTCCTTTCAAAGCCCATAGAAGTTGGT
65 GGTGGCACCCTTCAATCCTCAAAAAGCAAGACGCATTTTTCCTTTCAAAGCCCACAGAAGTTAGT
* *
1450248 GGTACCCTTTAGTTCTCAAAGAGAAGGATGCCTTT
130 GGTACCCTTTAGTCCTCAAAAAGAAGGATGCCTTT
1450283 TT
1 TT
1450285 CCTTTCAAAG
Statistics
Matches: 143, Mismatches: 20, Indels: 6
0.85 0.12 0.04
Matches are distributed among these distances:
163 1 0.01
164 93 0.65
165 49 0.34
ACGTcount: A:0.25, C:0.25, G:0.20, T:0.30
Consensus pattern (164 bp):
TTGATGGCACCCTTTAGTCCGCAAAGAGCAAGATGCCTTTTTCCTTTCAAAGCCCACACGAGTTG
GTGGCACCCTTCAATCCTCAAAAAGCAAGACGCATTTTTCCTTTCAAAGCCCACAGAAGTTAGTG
GTACCCTTTAGTCCTCAAAAAGAAGGATGCCTTT
Found at i:1450446 original size:41 final size:41
Alignment explanation
Indices: 1450370--1450449 Score: 135
Period size: 41 Copynumber: 2.0 Consensus size: 41
1450360 ACACGAATTG
*
1450370 GTGGCACCCTTTAGTCCTCAAAGAGCAGCATGCCTTTTTAA
1 GTGGCACCCTTTAGTCCTCAAAGAGCAGCACGCCTTTTTAA
1450411 GTGGCACCCTTTAGTCCTCAAAGAGCAGGC-CGCCTTTTT
1 GTGGCACCCTTTAGTCCTCAAAGAGCA-GCACGCCTTTTT
1450450 CTTTTCAAAG
Statistics
Matches: 37, Mismatches: 1, Indels: 2
0.93 0.03 0.05
Matches are distributed among these distances:
41 35 0.95
42 2 0.05
ACGTcount: A:0.21, C:0.29, G:0.21, T:0.29
Consensus pattern (41 bp):
GTGGCACCCTTTAGTCCTCAAAGAGCAGCACGCCTTTTTAA
Found at i:1450481 original size:62 final size:62
Alignment explanation
Indices: 1450411--1450612 Score: 269
Period size: 62 Copynumber: 3.3 Consensus size: 62
1450401 GCCTTTTTAA
** *
1450411 GTGGCACCCTTTAGTCCTCAAAGAGCAGGCCGCCTTTTTCTTTTCAAAGCCCACACAAGTTG
1 GTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTTTCCTTTCAAAGCCCACACAAGTTG
* * *
1450473 GTGGCACCCTTTAGTCCTCAAAAATCAGGATGCCTTTTTCCTTTCAAAGCCCACACAAGTTT
1 GTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTTTCCTTTCAAAGCCCACACAAGTTG
* * * ** **
1450535 GTGGCACCCTTTAGTCCTTAAAGAGCAAGATGTCTTTTTCCTTTCAGCGCCCACACGTGTTG
1 GTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTTTCCTTTCAAAGCCCACACAAGTTG
* *
1450597 GTGGAACCCTTCAGTC
1 GTGGCACCCTTTAGTC
1450613 TCCTTTCAAA
Statistics
Matches: 122, Mismatches: 18, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
62 122 1.00
ACGTcount: A:0.22, C:0.29, G:0.19, T:0.30
Consensus pattern (62 bp):
GTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTTTCCTTTCAAAGCCCACACAAGTTG
Found at i:1450485 original size:227 final size:226
Alignment explanation
Indices: 1450184--1450860 Score: 733
Period size: 227 Copynumber: 3.0 Consensus size: 226
1450174 CACACAGTTG
* * ** * *
1450184 GTGGCACCCTTTAATCCTCAAAGAGCAAGACGTATTTTTCCTTTCAAAGCCCATAGAAGTTGGTG
1 GTGGCACCCTTTAGTCCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACAAGTTGGTG
* * * * *
1450249 GTACCCTTTAGTTCTCAAAGAGAAGGATGCCTTTTTCCTTTCAAAGCCCGCACGAATTGGTGGCA
66 GCACCCTTTAGTCCTCAAAAAGCAGGATGCCTTTTTCCTTTCAAAGCCCACACGAATTGGTGGCA
* *
1450314 CTCTTTAGTCCTCAAAAAGCTGGATGCCTTTTTCCTTTCAAAGCCCACACGAATTGGTGGCACCC
131 CTCTTTAGTCCTCAAAGAGCTGGATGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCC
*
1450379 TTTAGTCCTCAAAGAGCAGCATGCCTTTTTAA
196 TTCAGTCCTCAAAGAGCAGCATGCCTTTTT-A
* *
1450411 GTGGCACCCTTTAGTCCTCAAAGAGCAGGCCGCCTTTTTCTTTTCAAAGCCCACACAAGTTGGTG
1 GTGGCACCCTTTAGTCCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACAAGTTGGTG
* *
1450476 GCACCCTTTAGTCCTCAAAAATCAGGATGCCTTTTTCCTTTCAAAGCCCACAC-AAGTTTGTGGC
66 GCACCCTTTAGTCCTCAAAAAGCAGGATGCCTTTTTCCTTTCAAAGCCCACACGAA-TTGGTGGC
* * ** * ** * *
1450540 ACCCTTTAGTCCTTAAAGAGCAAGATGTCTTTTTCCTTTCAGCGCCCACACGTGTTGGTGGAACC
130 ACTCTTTAGTCCTCAAAGAGCTGGATGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACC
* * *** *
1450605 CTTCAGTCTCCTTTCAAAG-CCAACA---CAAGTTG
195 CTTCAG--TCC--TCAAAGAGCAGCATGCCTTTTTA
* * * * *
1450637 GTGGCACCCTTCAGTCCTCAAAGAGCAGGATGCCTTTCTCCTTTCAAAGCCAACACGAGTTGGTG
1 GTGGCACCCTTTAGTCCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACAAGTTGGTG
* * * * * * **
1450702 ACAGCTTTTAGTCCTCAAAAAGCAGGTTGCCTTTTTCGTTTCAAA-CCTACACGGGTTGGTGGC-
66 GCACCCTTTAGTCCTCAAAAAGCAGGATGCCTTTTTCCTTTCAAAGCCCACACGAATTGGTGGCA
** * * *
1450765 CTCATTTTTTCCTCAAAGAG-TAGGACT-CCTTTTTCTTTTCAAAGCCTACACGAGTTTGTGGCA
131 CTC-TTTAGTCCTCAAAGAGCT-GGA-TGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCA
* *
1450828 CCCTTCAGTCCTCAAAAAGCAGGATGCCTTTTT
193 CCCTTCAGTCCTCAAAGAGCAGCATGCCTTTTT
1450861 CCTTTCAAAG
Statistics
Matches: 366, Mismatches: 71, Indels: 28
0.79 0.15 0.06
Matches are distributed among these distances:
221 5 0.01
222 3 0.01
223 3 0.01
224 2 0.01
225 67 0.18
226 100 0.27
227 173 0.47
229 3 0.01
230 4 0.01
231 6 0.02
ACGTcount: A:0.24, C:0.27, G:0.19, T:0.30
Consensus pattern (226 bp):
GTGGCACCCTTTAGTCCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACAAGTTGGTG
GCACCCTTTAGTCCTCAAAAAGCAGGATGCCTTTTTCCTTTCAAAGCCCACACGAATTGGTGGCA
CTCTTTAGTCCTCAAAGAGCTGGATGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCC
TTCAGTCCTCAAAGAGCAGCATGCCTTTTTA
Found at i:1450487 original size:103 final size:103
Alignment explanation
Indices: 1450308--1450511 Score: 311
Period size: 103 Copynumber: 2.0 Consensus size: 103
1450298 GCACGAATTG
* * *
1450308 GTGGCACTCTTTAGTCCTCAAAAAGCTGGATGCCTTTTTCCTTTCAAAGCCCACACGAATTGGTG
1 GTGGCACCCTTTAGTCCTCAAAAAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGAATTGGTG
*
1450373 GCACCCTTTAGTCCTCAAAGAGCAGCATGCCTTTTTAA
66 GCACCCTTTAGTCCTCAAAAAGCAGCATGCCTTTTTAA
* * *
1450411 GTGGCACCCTTTAGTCCTCAAAGAGCAGGCCGCCTTTTTCTTTTCAAAGCCCACAC-AAGTTGGT
1 GTGGCACCCTTTAGTCCTCAAAAAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGAA-TTGGT
* *
1450475 GGCACCCTTTAGTCCTCAAAAATCAGGATGCCTTTTT
65 GGCACCCTTTAGTCCTCAAAAAGCAGCATGCCTTTTT
1450512 CCTTTCAAAG
Statistics
Matches: 91, Mismatches: 9, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
102 2 0.02
103 89 0.98
ACGTcount: A:0.24, C:0.28, G:0.19, T:0.30
Consensus pattern (103 bp):
GTGGCACCCTTTAGTCCTCAAAAAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGAATTGGTG
GCACCCTTTAGTCCTCAAAAAGCAGCATGCCTTTTTAA
Found at i:1450523 original size:165 final size:165
Alignment explanation
Indices: 1450246--1450561 Score: 492
Period size: 165 Copynumber: 1.9 Consensus size: 165
1450236 ATAGAAGTTG
* * * *
1450246 GTGGTACCCTTTAGTTCTCAAAGAGAAGGATGCCTTTTTCCTTTCAAAGCCCGCACGAATTGGTG
1 GTGGCACCCTTTAGTCCTCAAAGAGAAGGACGCCTTTTTCCTTTCAAAGCCCACACGAATTGGTG
* *
1450311 GCACTCTTTAGTCCTCAAAAAGCTGGATGCCTTTTTCCTTTCAAAGCCCACACGAA-TTGGTGGC
66 GCACCCTTTAGTCCTCAAAAAGCAGGATGCCTTTTTCCTTTCAAAGCCCACAC-AAGTTGGTGGC
1450375 ACCCTTTAGTCCTCAAAGAGCAGCATGCCTTTTTAA
130 ACCCTTTAGTCCTCAAAGAGCAGCATGCCTTTTTAA
* * *
1450411 GTGGCACCCTTTAGTCCTCAAAGAGCAGGCCGCCTTTTTCTTTTCAAAGCCCACAC-AAGTTGGT
1 GTGGCACCCTTTAGTCCTCAAAGAGAAGGACGCCTTTTTCCTTTCAAAGCCCACACGAA-TTGGT
* *
1450475 GGCACCCTTTAGTCCTCAAAAATCAGGATGCCTTTTTCCTTTCAAAGCCCACACAAGTTTGTGGC
65 GGCACCCTTTAGTCCTCAAAAAGCAGGATGCCTTTTTCCTTTCAAAGCCCACACAAGTTGGTGGC
*
1450540 ACCCTTTAGTCCTTAAAGAGCA
130 ACCCTTTAGTCCTCAAAGAGCA
1450562 AGATGTCTTT
Statistics
Matches: 137, Mismatches: 12, Indels: 4
0.90 0.08 0.03
Matches are distributed among these distances:
164 4 0.03
165 133 0.97
ACGTcount: A:0.24, C:0.28, G:0.19, T:0.29
Consensus pattern (165 bp):
GTGGCACCCTTTAGTCCTCAAAGAGAAGGACGCCTTTTTCCTTTCAAAGCCCACACGAATTGGTG
GCACCCTTTAGTCCTCAAAAAGCAGGATGCCTTTTTCCTTTCAAAGCCCACACAAGTTGGTGGCA
CCCTTTAGTCCTCAAAGAGCAGCATGCCTTTTTAA
Found at i:1450693 original size:102 final size:102
Alignment explanation
Indices: 1450511--1450701 Score: 283
Period size: 102 Copynumber: 1.9 Consensus size: 102
1450501 GATGCCTTTT
* * * * * *
1450511 TCCTTTCAAAGCCCACACAAGTTTGTGGCACCCTTTAGTCCTTAAAGAGCAAGATGTCTTTTTCC
1 TCCTTTCAAAGCCAACACAAGTTGGTGGCACCCTTCAGTCCTCAAAGAGCAAGATGCCTTTCTCC
** * *
1450576 TTTCAGCGCCCACACGTGTTGGTGGAACCCTTCAGTC
66 TTTCAAAGCCAACACGAGTTGGTGGAACCCTTCAGTC
*
1450613 TCCTTTCAAAGCCAACACAAGTTGGTGGCACCCTTCAGTCCTCAAAGAGCAGGATGCCTTTCTCC
1 TCCTTTCAAAGCCAACACAAGTTGGTGGCACCCTTCAGTCCTCAAAGAGCAAGATGCCTTTCTCC
1450678 TTTCAAAGCCAACACGAGTTGGTG
66 TTTCAAAGCCAACACGAGTTGGTG
1450702 ACAGCTTTTA
Statistics
Matches: 78, Mismatches: 11, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
102 78 1.00
ACGTcount: A:0.24, C:0.29, G:0.19, T:0.28
Consensus pattern (102 bp):
TCCTTTCAAAGCCAACACAAGTTGGTGGCACCCTTCAGTCCTCAAAGAGCAAGATGCCTTTCTCC
TTTCAAAGCCAACACGAGTTGGTGGAACCCTTCAGTC
Found at i:1450715 original size:62 final size:62
Alignment explanation
Indices: 1450613--1450922 Score: 383
Period size: 62 Copynumber: 5.0 Consensus size: 62
1450603 CCCTTCAGTC
* * * *
1450613 TCCTTTCAAAGCCAACACAAGTTGGTGGCACCCTTCAGTCCTCAAAGAGCAGGATGCCTTTC
1 TCCTTTCAAAGCCAACACGAGTTGGTGGCACCCTTTAGTCCTCAAAAAGCAGGATGCCTTTT
* * * *
1450675 TCCTTTCAAAGCCAACACGAGTTGGTGACAGCTTTTAGTCCTCAAAAAGCAGGTTGCCTTTT
1 TCCTTTCAAAGCCAACACGAGTTGGTGGCACCCTTTAGTCCTCAAAAAGCAGGATGCCTTTT
* * * * ** * *
1450737 TCGTTTCAAA-CCTACACGGGTTGGTGGC-CTCATTTTTTCCTCAAAGAGTAGGACT-CCTTTT
1 TCCTTTCAAAGCCAACACGAGTTGGTGGCAC-CCTTTAGTCCTCAAAAAGCAGGA-TGCCTTTT
* * * *
1450798 TCTTTTCAAAGCCTACACGAGTTTGTGGCACCCTTCAGTCCTCAAAAAGCAGGATGCCTTTT
1 TCCTTTCAAAGCCAACACGAGTTGGTGGCACCCTTTAGTCCTCAAAAAGCAGGATGCCTTTT
* *
1450860 TCCTTTCAAAGCCCACACGAGTTAGTGGCACCCTTTAGTCCTCAAAAAGCAGGATGCCTTTT
1 TCCTTTCAAAGCCAACACGAGTTGGTGGCACCCTTTAGTCCTCAAAAAGCAGGATGCCTTTT
1450922 T
1 T
1450923 GAGTGGCACC
Statistics
Matches: 211, Mismatches: 32, Indels: 10
0.83 0.13 0.04
Matches are distributed among these distances:
61 48 0.23
62 162 0.77
63 1 0.00
ACGTcount: A:0.24, C:0.27, G:0.19, T:0.30
Consensus pattern (62 bp):
TCCTTTCAAAGCCAACACGAGTTGGTGGCACCCTTTAGTCCTCAAAAAGCAGGATGCCTTTT
Found at i:1450746 original size:226 final size:222
Alignment explanation
Indices: 1449937--1450746 Score: 774
Period size: 226 Copynumber: 3.6 Consensus size: 222
1449927 GTATTTTTCT
* * * * * * *
1449937 TTTCAAAGCCCACAGAAGTTGATGGGACCCTTTAGTCCTCAAATAGCAGGATGCCTTTTTTCTTT
1 TTTCAAAGCCAACACAAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGACGCCTTTTTCCTTT
* * *
1450002 CGAAGCCCGCACGAGTTGGTGGCACCCTTCAGTCCTCAAAAAGCAGGATGCCTTTTTCCTTTCAA
66 CAAAGCCCACACGAGTTGGTGGCACCCTTTAGTCCTCAAAAAGCAGGATGCCTTTTTCCTTTCAA
* * ** **
1450067 AGCCCACACGAGTTAGTGTCACCCTTTAGTCCTCAAAAAGCAGGATGCCTTTTTGAGTGGCAC-C
131 AGCCCACACAAGTTAGTGGCACCCTTTAGTCCTCAAAAAGCAGGATGCCTTTTT-CCTTTCACGC
* ** ** ** *
1450131 CTTTAGTC-CGGAAAGAGCAAGATGCCTT-TTTCC
195 C--CA--CACGG-TTG-G-TGGAACCCTTAGTTCC
* * * **
1450164 TTTCAAAGCCCACAC-AGTTGGTGGCACCCTTTAATCCTCAAAGAGCAAGACGTATTTTTCCTTT
1 TTTCAAAGCCAACACAAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGACGCCTTTTTCCTTT
* * * * *
1450228 CAAAGCCCATA-GAAGTTGGTGGTACCCTTTAGTTCTCAAAGAGAAGGATGCCTTTTTCCTTTCA
66 CAAAGCCCACACG-AGTTGGTGGCACCCTTTAGTCCTCAAAAAGCAGGATGCCTTTTTCCTTTCA
* * * * *
1450292 AAGCCCGCACGAA-TTGGTGGCACTCTTTAGTCCTCAAAAAGCTGGATGCCTTTTTCCTTTCAAA
130 AAGCCCACAC-AAGTTAGTGGCACCCTTTAGTCCTCAAAAAGCAGGATGCCTTTTTCCTTTC-AC
* *
1450356 GCCCACACGAATTGGTGGCACCCTTTAG-TCC
193 GCCCACACG-GTTGGTGGAACCC-TTAGTTCC
* * *** * *
1450387 --TCAAAGAGCAGCATGCCTTTTTAAGTGGCACCCTTTAGTCCTCAAAGAGCAGGCCGCCTTTTT
1 TTTCAAAG-CCAACA---CAAGTT-GGTGGCACCCTTTAGTCCTCAAAGAGCAGGACGCCTTTTT
* * *
1450450 CTTTTCAAAGCCCACACAAGTTGGTGGCACCCTTTAGTCCTCAAAAATCAGGATGCCTTTTTCCT
61 CCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGTCCTCAAAAAGCAGGATGCCTTTTTCCT
* * * * *
1450515 TTCAAAGCCCACACAAGTTTGTGGCACCCTTTAGTCCTTAAAGAGCAAGATGTCTTTTTCCTTTC
126 TTCAAAGCCCACACAAGTTAGTGGCACCCTTTAGTCCTCAAAAAGCAGGATGCCTTTTTCCTTTC
1450580 AGCGCCCACACGTGTTGGTGGAACCCTTCAGTCTCC
191 A-CGCCCACACG-GTTGGTGGAACCCTT-AGT-TCC
* * *
1450616 TTTCAAAGCCAACACAAGTTGGTGGCACCCTTCAGTCCTCAAAGAGCAGGATGCCTTTCTCCTTT
1 TTTCAAAGCCAACACAAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGACGCCTTTTTCCTTT
* * * * * *
1450681 CAAAGCCAACACGAGTTGGTGACAGCTTTTAGTCCTCAAAAAGCAGGTTGCCTTTTTCGTTTCAA
66 CAAAGCCCACACGAGTTGGTGGCACCCTTTAGTCCTCAAAAAGCAGGATGCCTTTTTCCTTTCAA
1450746 A
131 A
1450747 CCTACACGGG
Statistics
Matches: 472, Mismatches: 89, Indels: 45
0.78 0.15 0.07
Matches are distributed among these distances:
221 6 0.01
222 6 0.01
223 7 0.01
224 3 0.01
225 5 0.01
226 246 0.52
227 186 0.39
229 3 0.01
230 4 0.01
231 6 0.01
ACGTcount: A:0.25, C:0.27, G:0.19, T:0.29
Consensus pattern (222 bp):
TTTCAAAGCCAACACAAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGACGCCTTTTTCCTTT
CAAAGCCCACACGAGTTGGTGGCACCCTTTAGTCCTCAAAAAGCAGGATGCCTTTTTCCTTTCAA
AGCCCACACAAGTTAGTGGCACCCTTTAGTCCTCAAAAAGCAGGATGCCTTTTTCCTTTCACGCC
CACACGGTTGGTGGAACCCTTAGTTCC
Found at i:1450856 original size:123 final size:124
Alignment explanation
Indices: 1450651--1450920 Score: 339
Period size: 123 Copynumber: 2.2 Consensus size: 124
1450641 CACCCTTCAG
* * *
1450651 TCCTCAAAGAGCAGGATGCCTTTCTCCTTTCAAAGCCAACACGAGTTGGTGACAGCTTTTAGTCC
1 TCCTCAAAGAGCAGGATGCCTTTCTCCTTTCAAAGCCAACACGAGTTGGTGACACCCTTCAGTCC
* * * * *
1450716 TCAAAAAGCAGGTTGCCTTTTTCGTTTCAAA-CCTACACGGGTTGGTGGCCTCATTTTT
66 TCAAAAAGCAGGATGCCTTTTTCCTTTCAAAGCCCACACGAGTTAGTGGCCTCATTTTT
* * * * * *
1450774 TCCTCAAAGAGTAGGACT-CCTTTTTCTTTTCAAAGCCTACACGAGTTTGTGGCACCCTTCAGTC
1 TCCTCAAAGAGCAGGA-TGCCTTTCTCCTTTCAAAGCCAACACGAGTTGGTGACACCCTTCAGTC
* **
1450838 CTCAAAAAGCAGGATGCCTTTTTCCTTTCAAAGCCCACACGAGTTAGTGGCAC-CCTTTAG
65 CTCAAAAAGCAGGATGCCTTTTTCCTTTCAAAGCCCACACGAGTTAGTGGC-CTCATTTTT
*
1450898 TCCTCAAAAAGCAGGATGCCTTT
1 TCCTCAAAGAGCAGGATGCCTTT
1450921 TTGAGTGGCA
Statistics
Matches: 124, Mismatches: 19, Indels: 7
0.83 0.13 0.05
Matches are distributed among these distances:
123 84 0.68
124 39 0.31
125 1 0.01
ACGTcount: A:0.24, C:0.27, G:0.19, T:0.30
Consensus pattern (124 bp):
TCCTCAAAGAGCAGGATGCCTTTCTCCTTTCAAAGCCAACACGAGTTGGTGACACCCTTCAGTCC
TCAAAAAGCAGGATGCCTTTTTCCTTTCAAAGCCCACACGAGTTAGTGGCCTCATTTTT
Found at i:1450928 original size:41 final size:41
Alignment explanation
Indices: 1450883--1450963 Score: 126
Period size: 41 Copynumber: 2.0 Consensus size: 41
1450873 CACACGAGTT
* *
1450883 AGTGGCACCCTTTAGTCCTCAAAAAGCAGGATGCCTTTTTG
1 AGTGGCACCCTTTAGTCCGCAAAAAGCAAGATGCCTTTTTG
* *
1450924 AGTGGCACCCTTTAGTCCGGAAAGAGCAAGATGCCTTTTT
1 AGTGGCACCCTTTAGTCCGCAAAAAGCAAGATGCCTTTTT
1450964 CCTTTCAAAG
Statistics
Matches: 36, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
41 36 1.00
ACGTcount: A:0.25, C:0.23, G:0.23, T:0.28
Consensus pattern (41 bp):
AGTGGCACCCTTTAGTCCGCAAAAAGCAAGATGCCTTTTTG
Found at i:1450995 original size:61 final size:62
Alignment explanation
Indices: 1450925--1451210 Score: 382
Period size: 62 Copynumber: 4.6 Consensus size: 62
1450915 GCCTTTTTGA
** *
1450925 GTGGCACCCTTTAGTCCGGAAAGAGCAAGATGCCTTTTTCCTTTCAAAGCCCACAC-AGTTG
1 GTGGCACCCTTTAGTCCTCAAAGAGCAAGATGCCTTTTTCCTTTCAAAGCCCACACGAATTG
* * ** *
1450986 GTGGCACCCTTTAATCCTCAAAGAGCAAGACGTATTTTTCCTTTCAAAGCCCATA-GAAGTTG
1 GTGGCACCCTTTAGTCCTCAAAGAGCAAGATGCCTTTTTCCTTTCAAAGCCCACACGAA-TTG
* * *
1451048 GTGGTACCCTTTAGTTCTCAAAGAG-AAGGATGCCTTTTTCCTTTCAAAGCCCGCACGAATTG
1 GTGGCACCCTTTAGTCCTCAAAGAGCAA-GATGCCTTTTTCCTTTCAAAGCCCACACGAATTG
* * **
1451110 GTGGCACTCTTTAGTCCTCAAAAAGCTGGATGCCTTTTTCCTTTCAAAGCCCACACGAATTG
1 GTGGCACCCTTTAGTCCTCAAAGAGCAAGATGCCTTTTTCCTTTCAAAGCCCACACGAATTG
1451172 GTGGCACCCTTTAGTCCTCAAAGAGC-AGCATGCCTTTTT
1 GTGGCACCCTTTAGTCCTCAAAGAGCAAG-ATGCCTTTTT
1451211 AAGTGGCACC
Statistics
Matches: 193, Mismatches: 26, Indels: 11
0.84 0.11 0.05
Matches are distributed among these distances:
61 52 0.27
62 138 0.72
63 3 0.02
ACGTcount: A:0.25, C:0.26, G:0.20, T:0.29
Consensus pattern (62 bp):
GTGGCACCCTTTAGTCCTCAAAGAGCAAGATGCCTTTTTCCTTTCAAAGCCCACACGAATTG
Found at i:1451095 original size:288 final size:288
Alignment explanation
Indices: 1449774--1452362 Score: 1433
Period size: 288 Copynumber: 9.0 Consensus size: 288
1449764 CACGAGTTCA
* * * * ***
1449774 TGGCACCCTTTAGTCCTTAAA-ATGCAGGATGCCTTTTTCGTTTAAAAACCCACATTGGTTGGTG
1 TGGCACCCTTTAGTCCTCAAAGA-GCAGGATGCCTTTTTCCTTTCAAAGCCCACACAAGTTGGTG
* * * * * * * * *
1449838 G-TCCATTTTGTCCTCAAAGAGCAGGACACCTTTTTCTTTTCAAAGCCCGCACATGTTGTTGGCA
65 GCACCCTTTAGTCCTCAAAAAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACAAGTTGGTGGCA
* ** * * *
1449902 CCCTTTAGTCCTCAAAGAGCAA-GACGTATTTTTCTTTTCAAAGCCCACA-GAAGTTGATGGGAC
130 CCCTTTAGTCCTCAAAGAG-AAGGATGCCTTTTTCCTTTCAAAGCCCACACG-AGTTGGTGGCAC
* * * * *
1449965 CCTTTAGTCCTCAAATAGCAGGATGCCTTTTTTCTTTCGAAGCCCGCACGAGTTGGTGGCACCCT
193 CCTTCAGTCCTCAAAAAGCAGGATGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCT
* **
1450030 TCAGTCCTCAAAAAGCAGGATGCCTTTTT-CC
258 TTAGTCCTCAAAAAGCA-GATGCCTTTTTGAG
** * * * * * *** ** *
1450061 TTTCA-----AAG-CC-CACACGAGTTAGTG-TCACCCTTTAGTCCTCAAAAAGCAGGATGC-CT
1 TGGCACCCTTTAGTCCTCA-AAGAG-CAG-GAT--GCCTTT-TTCCTTTCAAAGC-CCA--CACA
** ** * * *
1450117 TTTTGAGTGGCACCCTTTAGTCCGGAAAGAGCAAGATGCCTTTTTCCTTTCAAAGCCCACAC-AG
57 AGTTG-GTGGCACCCTTTAGTCCTCAAAAAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACAAG
* * ** *
1450181 TTGGTGGCACCCTTTAATCCTCAAAGAGCAA-GACGTATTTTTCCTTTCAAAGCCCATA-GAAGT
121 TTGGTGGCACCCTTTAGTCCTCAAAGAG-AAGGATGCCTTTTTCCTTTCAAAGCCCACACG-AGT
* * * * * * *
1450244 TGGTGGTACCCTTTAGTTCTCAAAGAGAAGGATGCCTTTTTCCTTTCAAAGCCCGCACGAATTGG
184 TGGTGGCACCCTTCAGTCCTCAAAAAGCAGGATGCCTTTTTCCTTTCAAAGCCCACACGAGTTGG
* * **
1450309 TGGCACTCTTTAGTCCTCAAAAAGCTGGATGCCTTTTT-CC
249 TGGCACCCTTTAGTCCTCAAAAAGC-AGATGCCTTTTTGAG
** * * * ** ** * * *** * * ***
1450349 TTTCA-----AAGCCCACACGAATTGGTGGCA-CCCTTTAGTCCTCAAAGAGCAGCATGC-CTTT
1 TGGCACCCTTTAGTCCTCA--AAGAGCAGG-ATGCCTTT-TTCCTTTCAAAGC-CCA--CACAAG
* * * *
1450407 TTAAGTGGCACCCTTTAGTCCTCAAAGAGCAGGCCGCCTTTTTCTTTTCAAAGCCCACACAAGTT
59 TT-GGTGGCACCCTTTAGTCCTCAAAAAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACAAGTT
* ** * *
1450472 GGTGGCACCCTTTAGTCCTCAAAAATCAGGATGCCTTTTTCCTTTCAAAGCCCACACAAGTTTGT
123 GGTGGCACCCTTTAGTCCTCAAAGAGAAGGATGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGT
* * * * * ** * *
1450537 GGCACCCTTTAGTCCTTAAAGAGCAAGATGTCTTTTTCCTTTCAGCGCCCACACGTGTTGGTGGA
188 GGCACCCTTCAGTCCTCAAAAAGCAGGATGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGC
* *** ***
1450602 ACCCTTCAGTCTCCTTTCAAAGCCA-A--CACAAGTTG-G
253 ACCCTTTAG--TCCTCAAAAAG-CAGATGC-CTTTTTGAG
* * * * *
1450638 TGGCACCCTTCAGTCCTCAAAGAGCAGGATGCCTTTCTCCTTTCAAAGCCAACACGAGTTGGTGA
1 TGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTTTCCTTTCAAAGCCCACACAAGTTGGTGG
* * ** * * **
1450703 CAGCTTTTAGTCCTCAAAAAGCAGGTTGCCTTTTTCGTTTCAAA-CCTACACGGGTTGGTGGC-C
66 CACCCTTTAGTCCTCAAAAAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACAAGTTGGTGGCAC
* ** * * * *
1450766 TCATTTTTTCCTCAAAGAGTAGGACT-CCTTTTTCTTTTCAAAGCCTACACGAGTTTGTGGCACC
131 -CCTTTAGTCCTCAAAGAGAAGGA-TGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACC
*
1450830 CTTCAGTCCTCAAAAAGCAGGATGCCTTTTTCCTTTCAAAGCCCACACGAGTTAGTGGCACCCTT
194 CTTCAGTCCTCAAAAAGCAGGATGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTT
1450895 TAGTCCTCAAAAAGCAGGATGCCTTTTTGAG
259 TAGTCCTCAAAAAGCA-GATGCCTTTTTGAG
** *
1450926 TGGCACCCTTTAGTCCGGAAAGAGCAAGATGCCTTTTTCCTTTCAAAGCCCACAC-AGTTGGTGG
1 TGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTTTCCTTTCAAAGCCCACACAAGTTGGTGG
* * * ** * * *
1450990 CACCCTTTAATCCTCAAAGAGCAAGACGTATTTTTCCTTTCAAAGCCCATAGAAGTTGGTGGTAC
66 CACCCTTTAGTCCTCAAAAAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACAAGTTGGTGGCAC
* * * *
1451055 CCTTTAGTTCTCAAAGAGAAGGATGCCTTTTTCCTTTCAAAGCCCGCACGAATTGGTGGCACTCT
131 CCTTTAGTCCTCAAAGAGAAGGATGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCT
* * *
1451120 TTAGTCCTCAAAAAGCTGGATGCCTTTTTCCTTTCAAAGCCCACACGAATTGGTGGCACCCTTTA
196 TCAGTCCTCAAAAAGCAGGATGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTA
* *
1451185 GTCCTCAAAGAGCAGCATGCCTTTTTAAG
261 GTCCTCAAAAAGCAG-ATGCCTTTTTGAG
** *
1451214 TGGCACCCTTTAGTCCTCAAAGAGCAGGCCGCCTTTTTCTTTTCAAAGCCCACACAAGTTGGTGG
1 TGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTTTCCTTTCAAAGCCCACACAAGTTGGTGG
* * *
1451279 CACCCTTTAGTCCTCAAAAATCAGGATGCCTTTTTCCTTTCAAAGCCCACACAAGTTTGTGGCAC
66 CACCCTTTAGTCCTCAAAAAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACAAGTTGGTGGCAC
* * ** * *
1451344 CCTTTAGTCCTTAAAGAGCAA-GATGTCTTTTTCCTTTCAGTGCCCACACGTGTTGGTGGAACCC
131 CCTTTAGTCCTCAAAGAG-AAGGATGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCC
*** ** *** ** * * **
1451408 TTCAGTCTCCTTTCAAAGCCAACATAAGTTGGTGGCACCCTTC--AGTCCTCA-AAGAGCAGGAT
195 TTCAG--TCCTCAAAAAG-CAGGATGCCTT--T--TTCCTTTCAAAG-CC-CACACGAGTTGG-T
* *** ***
1451470 -G---CCTTT-CTCCTTTCAAAGCCA-A--CACGAGTTG-G
250 GGCACCCTTTAGTCCTCAAAAAG-CAGATGC-CTTTTTGAG
* * * * * * * **
1451502 TGACAGCTTTTAGTCCTCAAAAAGCAGGTTGCCTTTTTCGTTTCAAA-CCTACACGGGTTGGTGG
1 TGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTTTCCTTTCAAAGCCCACACAAGTTGGTGG
* ** * * * * * * *
1451566 C-CTCATTTTTTCCTCAAAGAGTAGGACTCCTTTTTCTTTTCAAAGCCTACACGAGTTTGTGGCA
66 CAC-CCTTTAGTCCTCAAAAAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACAAGTTGGTGGCA
* * * * * *
1451630 CCCTTTAGTTCTGAAAGAGCAGGATGCCTTTTTCTTTTCAAAGCCCACACGAGTTTGTGACACCC
130 CCCTTTAGTCCTCAAAGAGAAGGATGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCC
* * * * * * *
1451695 TTTAGTCCTCAAAGAGCAAGATGCCCTTTTCCTTTCAATGCCCACACGAGTTGGTGGCACCATTC
195 TTCAGTCCTCAAAAAGCAGGATGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTT
*** ** ***
1451760 AGTCTCCTTTCAAAGCCCA--CACAAGTTG-G
260 AG--TCCTCAAAAAGCAGATGC-CTTTTTGAG
* * * **
1451789 TGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTTTCATTTCAAAGCTCACACGAGTTCATGG
1 TGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTTTCCTTTCAAAGCCCACACAAGTTGGTGG
* * * * * * *** *
1451854 CACCCTTTAGTCCTTAAAATGCAGGATGCCTTTTTCGTTTAAAAACCCACATTGGTTGGTGG-TC
66 CACCCTTTAGTCCTCAAAAAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACAAGTTGGTGGCAC
* * * * ** * * * *
1451918 CATTTTGTCTTCAAAGAGCAGGACACCTTTTTCTTTTTAAAGCCCGCAC-ATGTTGTTGGCACCC
131 CCTTTAGTCCTCAAAGAGAAGGATGCCTTTTTCCTTTCAAAGCCCACACGA-GTTGGTGGCACCC
* * * * ** * * *
1451982 TTTAGTCCTCAAAGAGCAAGACGTATTTTTCTTTTCAAAGCCCACA-GAAGTTGATGGGACCCTT
195 TTCAGTCCTCAAAAAGCAGGATGCCTTTTTCCTTTCAAAGCCCACACG-AGTTGGTGGCACCCTT
*
1452046 TAGTCCTCAAATAGCAGGATGCCTTTTTCCTTTCGAAGCCCGCACGAGTTGG
259 TAGTCCTCAAAAAGCA-GATGCC---TT--TTT------------GA----G
* * * *
1452098 TGGCACCCTTCAGTCCTCAAAAAGCAGGATGCCTTTTTCCTTTCAAAGCCCACACGAGTTAGTGG
1 TGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTTTCCTTTCAAAGCCCACACAAGTTGGTGG
* * *
1452163 CACCCTTTAGTCCTCAAAGAGCAGCATGCC---TT--TTT------------AA----GTGGCAC
66 CACCCTTTAGTCCTCAAAAAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACAAGTTGGTGGCAC
* * * *
1452207 CCTTTAGTCCTCAAAGAGCAA-GACGCTTTTTTCCTTTCAAAGCCCACAGGAGTTGGTGGCACCT
131 CCTTTAGTCCTCAAAGAG-AAGGATGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCC
* * * * * * * * *
1452271 TTTAGTCCTCAAAGAGTAGGACGCATTTTTCTTTTCAAAGCTCATACAAGTTGGTGGCACCCTTT
195 TTCAGTCCTCAAAAAGCAGGATGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTT
* *
1452336 AGTCCTCAAAGAGCAGGACGCCTTTTT
260 AGTCCTCAAAAAGCA-GATGCCTTTTT
1452363 CCTTTCAAAG
Statistics
Matches: 1808, Mismatches: 389, Indels: 213
0.75 0.16 0.09
Matches are distributed among these distances:
280 9 0.00
281 13 0.01
282 8 0.00
283 1 0.00
284 19 0.01
285 31 0.02
286 11 0.01
287 469 0.26
288 644 0.36
289 417 0.23
290 10 0.01
291 34 0.02
292 25 0.01
294 9 0.00
295 8 0.00
296 8 0.00
304 4 0.00
306 2 0.00
309 86 0.05
ACGTcount: A:0.24, C:0.27, G:0.19, T:0.30
Consensus pattern (288 bp):
TGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTTTCCTTTCAAAGCCCACACAAGTTGGTGG
CACCCTTTAGTCCTCAAAAAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACAAGTTGGTGGCAC
CCTTTAGTCCTCAAAGAGAAGGATGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCT
TCAGTCCTCAAAAAGCAGGATGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTA
GTCCTCAAAAAGCAGATGCCTTTTTGAG
Found at i:1451116 original size:226 final size:226
Alignment explanation
Indices: 1450729--1451148 Score: 569
Period size: 226 Copynumber: 1.9 Consensus size: 226
1450719 AAAAGCAGGT
* * * ** * * *
1450729 TGCCTTTTTCGTTTCAAACCTACACGGGTTGGTGGCCTCATTTTTTCCTCAAAGAGTAGGACTCC
1 TGCCTTTTTCCTTTCAAACCCACACGAGTTGGTGGCCTCATTTAATCCTCAAAGAGCAAGACTCA
* * * *
1450794 TTTTTCTTTTCAAAGCCTACACGAGTTTGTGGCACCCTTCAGTCCTCAAAAAGCAGGATGCCTTT
66 TTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTCAGTCCTCAAAAAGAAGGATGCCTTT
*
1450859 TTCCTTTCAAAGCCCACACGAGTTAGTGGCACCCTTTAGTCCTCAAAAAGCAGGATGCCTTTTTG
131 TTCCTTTCAAAGCCCACACGAATTAGTGGCACCCTTTAGTCCTCAAAAAGCAGGATGCCTTTTTG
1450924 AGTGGCACCCTTTAGTCCGGAAAGAGCAAGA
196 AGTGGCACCCTTTAGTCCGGAAAGAGCAAGA
*
1450955 TGCCTTTTTCCTTTCAAAGCCCACAC-AGTTGGTGGCAC-CCTTTAATCCTCAAAGAGCAAGACG
1 TGCCTTTTTCCTTTCAAA-CCCACACGAGTTGGTGGC-CTCATTTAATCCTCAAAGAGCAAGAC-
* * * * *
1451018 T-ATTTTTCCTTTCAAAGCCCATA-GAAGTTGGTGGTACCCTTTAGTTCTCAAAGAGAAGGATGC
63 TCATTTTTCCTTTCAAAGCCCACACG-AGTTGGTGGCACCCTTCAGTCCTCAAAAAGAAGGATGC
* * * *
1451081 CTTTTTCCTTTCAAAGCCCGCACGAATTGGTGGCACTCTTTAGTCCTCAAAAAGCTGGATGCCTT
127 CTTTTTCCTTTCAAAGCCCACACGAATTAGTGGCACCCTTTAGTCCTCAAAAAGCAGGATGCCTT
1451146 TTT
192 TTT
1451149 CCTTTCAAAG
Statistics
Matches: 167, Mismatches: 23, Indels: 8
0.84 0.12 0.04
Matches are distributed among these distances:
225 1 0.01
226 158 0.95
227 8 0.05
ACGTcount: A:0.24, C:0.26, G:0.19, T:0.31
Consensus pattern (226 bp):
TGCCTTTTTCCTTTCAAACCCACACGAGTTGGTGGCCTCATTTAATCCTCAAAGAGCAAGACTCA
TTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTCAGTCCTCAAAAAGAAGGATGCCTTT
TTCCTTTCAAAGCCCACACGAATTAGTGGCACCCTTTAGTCCTCAAAAAGCAGGATGCCTTTTTG
AGTGGCACCCTTTAGTCCGGAAAGAGCAAGA
Found at i:1451248 original size:41 final size:41
Alignment explanation
Indices: 1451172--1451251 Score: 135
Period size: 41 Copynumber: 2.0 Consensus size: 41
1451162 ACACGAATTG
*
1451172 GTGGCACCCTTTAGTCCTCAAAGAGCAGCATGCCTTTTTAA
1 GTGGCACCCTTTAGTCCTCAAAGAGCAGCACGCCTTTTTAA
1451213 GTGGCACCCTTTAGTCCTCAAAGAGCAGGC-CGCCTTTTT
1 GTGGCACCCTTTAGTCCTCAAAGAGCA-GCACGCCTTTTT
1451252 CTTTTCAAAG
Statistics
Matches: 37, Mismatches: 1, Indels: 2
0.93 0.03 0.05
Matches are distributed among these distances:
41 35 0.95
42 2 0.05
ACGTcount: A:0.21, C:0.29, G:0.21, T:0.29
Consensus pattern (41 bp):
GTGGCACCCTTTAGTCCTCAAAGAGCAGCACGCCTTTTTAA
Found at i:1451283 original size:62 final size:62
Alignment explanation
Indices: 1451213--1451414 Score: 269
Period size: 62 Copynumber: 3.3 Consensus size: 62
1451203 GCCTTTTTAA
** *
1451213 GTGGCACCCTTTAGTCCTCAAAGAGCAGGCCGCCTTTTTCTTTTCAAAGCCCACACAAGTTG
1 GTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTTTCCTTTCAAAGCCCACACAAGTTG
* * *
1451275 GTGGCACCCTTTAGTCCTCAAAAATCAGGATGCCTTTTTCCTTTCAAAGCCCACACAAGTTT
1 GTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTTTCCTTTCAAAGCCCACACAAGTTG
* * * ** **
1451337 GTGGCACCCTTTAGTCCTTAAAGAGCAAGATGTCTTTTTCCTTTCAGTGCCCACACGTGTTG
1 GTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTTTCCTTTCAAAGCCCACACAAGTTG
* *
1451399 GTGGAACCCTTCAGTC
1 GTGGCACCCTTTAGTC
1451415 TCCTTTCAAA
Statistics
Matches: 122, Mismatches: 18, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
62 122 1.00
ACGTcount: A:0.22, C:0.29, G:0.19, T:0.30
Consensus pattern (62 bp):
GTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTTTCCTTTCAAAGCCCACACAAGTTG
Found at i:1451289 original size:103 final size:103
Alignment explanation
Indices: 1451110--1451313 Score: 311
Period size: 103 Copynumber: 2.0 Consensus size: 103
1451100 GCACGAATTG
* * *
1451110 GTGGCACTCTTTAGTCCTCAAAAAGCTGGATGCCTTTTTCCTTTCAAAGCCCACACGAATTGGTG
1 GTGGCACCCTTTAGTCCTCAAAAAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGAATTGGTG
*
1451175 GCACCCTTTAGTCCTCAAAGAGCAGCATGCCTTTTTAA
66 GCACCCTTTAGTCCTCAAAAAGCAGCATGCCTTTTTAA
* * *
1451213 GTGGCACCCTTTAGTCCTCAAAGAGCAGGCCGCCTTTTTCTTTTCAAAGCCCACAC-AAGTTGGT
1 GTGGCACCCTTTAGTCCTCAAAAAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGAA-TTGGT
* *
1451277 GGCACCCTTTAGTCCTCAAAAATCAGGATGCCTTTTT
65 GGCACCCTTTAGTCCTCAAAAAGCAGCATGCCTTTTT
1451314 CCTTTCAAAG
Statistics
Matches: 91, Mismatches: 9, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
102 2 0.02
103 89 0.98
ACGTcount: A:0.24, C:0.28, G:0.19, T:0.30
Consensus pattern (103 bp):
GTGGCACCCTTTAGTCCTCAAAAAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGAATTGGTG
GCACCCTTTAGTCCTCAAAAAGCAGCATGCCTTTTTAA
Found at i:1451307 original size:227 final size:226
Alignment explanation
Indices: 1450986--1451662 Score: 724
Period size: 227 Copynumber: 3.0 Consensus size: 226
1450976 CACACAGTTG
* * ** * *
1450986 GTGGCACCCTTTAATCCTCAAAGAGCAAGACGTATTTTTCCTTTCAAAGCCCATAGAAGTTGGTG
1 GTGGCACCCTTTAGTCCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACAAGTTGGTG
* * * * *
1451051 GTACCCTTTAGTTCTCAAAGAGAAGGATGCCTTTTTCCTTTCAAAGCCCGCACGAATTGGTGGCA
66 GCACCCTTTAGTCCTCAAAAAGCAGGATGCCTTTTTCCTTTCAAAGCCCACACGAATTGGTGGCA
* *
1451116 CTCTTTAGTCCTCAAAAAGCTGGATGCCTTTTTCCTTTCAAAGCCCACACGAATTGGTGGCACCC
131 CTCTTTAGTCCTCAAAGAGCTGGATGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCC
1451181 TTTAGTCCTCAAAGAGCAGCATGCCTTTTTAA
196 TTTAGTCCTCAAAGAGCAGCATGCCTTTTT-A
* *
1451213 GTGGCACCCTTTAGTCCTCAAAGAGCAGGCCGCCTTTTTCTTTTCAAAGCCCACACAAGTTGGTG
1 GTGGCACCCTTTAGTCCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACAAGTTGGTG
* *
1451278 GCACCCTTTAGTCCTCAAAAATCAGGATGCCTTTTTCCTTTCAAAGCCCACAC-AAGTTTGTGGC
66 GCACCCTTTAGTCCTCAAAAAGCAGGATGCCTTTTTCCTTTCAAAGCCCACACGAA-TTGGTGGC
* * ** * ** * *
1451342 ACCCTTTAGTCCTTAAAGAGCAAGATGTCTTTTTCCTTTCAGTGCCCACACGTGTTGGTGGAACC
130 ACTCTTTAGTCCTCAAAGAGCTGGATGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACC
* * * *** *
1451407 CTTCAGTCTCCTTTCAAAG-CCAACAT---AAGTTG
195 CTTTAG--TCC--TCAAAGAGCAGCATGCCTTTTTA
* * * * *
1451439 GTGGCACCCTTCAGTCCTCAAAGAGCAGGATGCCTTTCTCCTTTCAAAGCCAACACGAGTTGGTG
1 GTGGCACCCTTTAGTCCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACAAGTTGGTG
* * * * * * **
1451504 ACAGCTTTTAGTCCTCAAAAAGCAGGTTGCCTTTTTCGTTTCAAA-CCTACACGGGTTGGTGGC-
66 GCACCCTTTAGTCCTCAAAAAGCAGGATGCCTTTTTCCTTTCAAAGCCCACACGAATTGGTGGCA
** * * *
1451567 CTCATTTTTTCCTCAAAGAG-TAGGACT-CCTTTTTCTTTTCAAAGCCTACACGAGTTTGTGGCA
131 CTC-TTTAGTCCTCAAAGAGCT-GGA-TGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCA
* * *
1451630 CCCTTTAGTTCTGAAAGAGCAGGATGCCTTTTT
193 CCCTTTAGTCCTCAAAGAGCAGCATGCCTTTTT
1451663 CTTTTCAAAG
Statistics
Matches: 364, Mismatches: 73, Indels: 28
0.78 0.16 0.06
Matches are distributed among these distances:
221 5 0.01
222 4 0.01
223 2 0.01
224 2 0.01
225 65 0.18
226 100 0.27
227 172 0.47
229 3 0.01
230 5 0.01
231 6 0.02
ACGTcount: A:0.24, C:0.26, G:0.19, T:0.31
Consensus pattern (226 bp):
GTGGCACCCTTTAGTCCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACAAGTTGGTG
GCACCCTTTAGTCCTCAAAAAGCAGGATGCCTTTTTCCTTTCAAAGCCCACACGAATTGGTGGCA
CTCTTTAGTCCTCAAAGAGCTGGATGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCC
TTTAGTCCTCAAAGAGCAGCATGCCTTTTTA
Found at i:1451325 original size:165 final size:165
Alignment explanation
Indices: 1451048--1451363 Score: 492
Period size: 165 Copynumber: 1.9 Consensus size: 165
1451038 ATAGAAGTTG
* * * *
1451048 GTGGTACCCTTTAGTTCTCAAAGAGAAGGATGCCTTTTTCCTTTCAAAGCCCGCACGAATTGGTG
1 GTGGCACCCTTTAGTCCTCAAAGAGAAGGACGCCTTTTTCCTTTCAAAGCCCACACGAATTGGTG
* *
1451113 GCACTCTTTAGTCCTCAAAAAGCTGGATGCCTTTTTCCTTTCAAAGCCCACACGAA-TTGGTGGC
66 GCACCCTTTAGTCCTCAAAAAGCAGGATGCCTTTTTCCTTTCAAAGCCCACAC-AAGTTGGTGGC
1451177 ACCCTTTAGTCCTCAAAGAGCAGCATGCCTTTTTAA
130 ACCCTTTAGTCCTCAAAGAGCAGCATGCCTTTTTAA
* * *
1451213 GTGGCACCCTTTAGTCCTCAAAGAGCAGGCCGCCTTTTTCTTTTCAAAGCCCACAC-AAGTTGGT
1 GTGGCACCCTTTAGTCCTCAAAGAGAAGGACGCCTTTTTCCTTTCAAAGCCCACACGAA-TTGGT
* *
1451277 GGCACCCTTTAGTCCTCAAAAATCAGGATGCCTTTTTCCTTTCAAAGCCCACACAAGTTTGTGGC
65 GGCACCCTTTAGTCCTCAAAAAGCAGGATGCCTTTTTCCTTTCAAAGCCCACACAAGTTGGTGGC
*
1451342 ACCCTTTAGTCCTTAAAGAGCA
130 ACCCTTTAGTCCTCAAAGAGCA
1451364 AGATGTCTTT
Statistics
Matches: 137, Mismatches: 12, Indels: 4
0.90 0.08 0.03
Matches are distributed among these distances:
164 4 0.03
165 133 0.97
ACGTcount: A:0.24, C:0.28, G:0.19, T:0.29
Consensus pattern (165 bp):
GTGGCACCCTTTAGTCCTCAAAGAGAAGGACGCCTTTTTCCTTTCAAAGCCCACACGAATTGGTG
GCACCCTTTAGTCCTCAAAAAGCAGGATGCCTTTTTCCTTTCAAAGCCCACACAAGTTGGTGGCA
CCCTTTAGTCCTCAAAGAGCAGCATGCCTTTTTAA
Found at i:1451495 original size:102 final size:102
Alignment explanation
Indices: 1451313--1451503 Score: 274
Period size: 102 Copynumber: 1.9 Consensus size: 102
1451303 GATGCCTTTT
* * * * * *
1451313 TCCTTTCAAAGCCCACACAAGTTTGTGGCACCCTTTAGTCCTTAAAGAGCAAGATGTCTTTTTCC
1 TCCTTTCAAAGCCAACACAAGTTGGTGGCACCCTTCAGTCCTCAAAGAGCAAGATGCCTTTCTCC
** * *
1451378 TTTCAGTGCCCACACGTGTTGGTGGAACCCTTCAGTC
66 TTTCAAAGCCAACACGAGTTGGTGGAACCCTTCAGTC
* *
1451415 TCCTTTCAAAGCCAACATAAGTTGGTGGCACCCTTCAGTCCTCAAAGAGCAGGATGCCTTTCTCC
1 TCCTTTCAAAGCCAACACAAGTTGGTGGCACCCTTCAGTCCTCAAAGAGCAAGATGCCTTTCTCC
1451480 TTTCAAAGCCAACACGAGTTGGTG
66 TTTCAAAGCCAACACGAGTTGGTG
1451504 ACAGCTTTTA
Statistics
Matches: 77, Mismatches: 12, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
102 77 1.00
ACGTcount: A:0.24, C:0.28, G:0.19, T:0.29
Consensus pattern (102 bp):
TCCTTTCAAAGCCAACACAAGTTGGTGGCACCCTTCAGTCCTCAAAGAGCAAGATGCCTTTCTCC
TTTCAAAGCCAACACGAGTTGGTGGAACCCTTCAGTC
Found at i:1451517 original size:62 final size:62
Alignment explanation
Indices: 1451415--1451755 Score: 382
Period size: 62 Copynumber: 5.5 Consensus size: 62
1451405 CCCTTCAGTC
** * *
1451415 TCCTTTCAAAGCCAACATAAGTTGGTGGCACCCTTCAGTCCTCAAAGAGCAGGATGCCTTTC
1 TCCTTTCAAAGCCAACACGAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTT
* * * * *
1451477 TCCTTTCAAAGCCAACACGAGTTGGTGACAGCTTTTAGTCCTCAAAAAGCAGGTTGCCTTTT
1 TCCTTTCAAAGCCAACACGAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTT
* * * * ** *
1451539 TCGTTTCAAA-CCTACACGGGTTGGTGGC-CTCATTTTTTCCTCAAAGAGTAGGACT-CCTTTT
1 TCCTTTCAAAGCCAACACGAGTTGGTGGCAC-CCTTTAGTCCTCAAAGAGCAGGA-TGCCTTTT
* * * * *
1451600 TCTTTTCAAAGCCTACACGAGTTTGTGGCACCCTTTAGTTCTGAAAGAGCAGGATGCCTTTT
1 TCCTTTCAAAGCCAACACGAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTT
* * * * * *
1451662 TCTTTTCAAAGCCCACACGAGTTTGTGACACCCTTTAGTCCTCAAAGAGCAAGATGCCCTTT
1 TCCTTTCAAAGCCAACACGAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTT
* *
1451724 TCCTTTCAATGCCCACACGAGTTGGTGGCACC
1 TCCTTTCAAAGCCAACACGAGTTGGTGGCACC
1451756 ATTCAGTCTC
Statistics
Matches: 235, Mismatches: 39, Indels: 10
0.83 0.14 0.04
Matches are distributed among these distances:
61 48 0.20
62 186 0.79
63 1 0.00
ACGTcount: A:0.23, C:0.27, G:0.19, T:0.30
Consensus pattern (62 bp):
TCCTTTCAAAGCCAACACGAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTT
Found at i:1451658 original size:123 final size:124
Alignment explanation
Indices: 1451418--1451755 Score: 367
Period size: 123 Copynumber: 2.7 Consensus size: 124
1451408 TTCAGTCTCC
* ** * * * *
1451418 TTTCAAAGCCAACATAAGTTGGTGGCACCCTTCAGTCCTCAAAGAGCAGGATGCCTTTCTCCTTT
1 TTTCAAAGCCCACACGAGTTGGTGACACCATTTAGTCCTCAAAGAGCAGGATGCCTTTTTCCTTT
* * * *
1451483 CAAAGCCAACACGAGTTGGTGACAGCTTTTAGTCCTCAAAAAGCAGGTTGCCTTTTTCG
66 CAAAGCCAACACGAGTTGGTGGCACCCTTTAGTCCTCAAAAAGCAGGATGCCTTTTTCG
* * * ** * *
1451542 TTTCAAA-CCTACACGGGTTGGTGGC-CTCATTTTTTCCTCAAAGAGTAGGACT-CCTTTTTCTT
1 TTTCAAAGCCCACACGAGTTGGTGACAC-CATTTAGTCCTCAAAGAGCAGGA-TGCCTTTTTCCT
* * * * * *
1451604 TTCAAAGCCTACACGAGTTTGTGGCACCCTTTAGTTCTGAAAGAGCAGGATGCCTTTTTCT
64 TTCAAAGCCAACACGAGTTGGTGGCACCCTTTAGTCCTCAAAAAGCAGGATGCCTTTTTCG
* * * *
1451665 TTTCAAAGCCCACACGAGTTTGTGACACCCTTTAGTCCTCAAAGAGCAAGATGCCCTTTTCCTTT
1 TTTCAAAGCCCACACGAGTTGGTGACACCATTTAGTCCTCAAAGAGCAGGATGCCTTTTTCCTTT
* *
1451730 CAATGCCCACACGAGTTGGTGGCACC
66 CAAAGCCAACACGAGTTGGTGGCACC
1451756 ATTCAGTCTC
Statistics
Matches: 174, Mismatches: 35, Indels: 10
0.79 0.16 0.05
Matches are distributed among these distances:
122 1 0.01
123 99 0.57
124 73 0.42
125 1 0.01
ACGTcount: A:0.24, C:0.26, G:0.20, T:0.30
Consensus pattern (124 bp):
TTTCAAAGCCCACACGAGTTGGTGACACCATTTAGTCCTCAAAGAGCAGGATGCCTTTTTCCTTT
CAAAGCCAACACGAGTTGGTGGCACCCTTTAGTCCTCAAAAAGCAGGATGCCTTTTTCG
Found at i:1451843 original size:102 final size:102
Alignment explanation
Indices: 1451665--1451857 Score: 296
Period size: 102 Copynumber: 1.9 Consensus size: 102
1451655 GCCTTTTTCT
* * *
1451665 TTTCAAAGCCCACACGAGTTTGTGACACCCTTTAGTCCTCAAAGAGCAAGATGCCCTTTTCCTTT
1 TTTCAAAGCCCACACAAGTTGGTGACACCCTTTAGTCCTCAAAGAGCAAGATGCCCTTTTCATTT
* **
1451730 CAATGCCCACACGAGTTGGTGGCACCATTCAGTCTCC
66 CAAAGCCCACACGAGTTCATGGCACCATTCAGTCTCC
* * *
1451767 TTTCAAAGCCCACACAAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTTTCATTT
1 TTTCAAAGCCCACACAAGTTGGTGACACCCTTTAGTCCTCAAAGAGCAAGATGCCCTTTTCATTT
*
1451832 CAAAGCTCACACGAGTTCATGGCACC
66 CAAAGCCCACACGAGTTCATGGCACC
1451858 CTTTAGTCCT
Statistics
Matches: 81, Mismatches: 10, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
102 81 1.00
ACGTcount: A:0.25, C:0.30, G:0.18, T:0.27
Consensus pattern (102 bp):
TTTCAAAGCCCACACAAGTTGGTGACACCCTTTAGTCCTCAAAGAGCAAGATGCCCTTTTCATTT
CAAAGCCCACACGAGTTCATGGCACCATTCAGTCTCC
Found at i:1451864 original size:62 final size:62
Alignment explanation
Indices: 1451764--1452197 Score: 475
Period size: 62 Copynumber: 7.0 Consensus size: 62
1451754 CCATTCAGTC
* *
1451764 TCCTTTCAAAGCCCACACAAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTT
1 TCCTTTCAAAGCCCACACGAGTTGATGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTT
* * * *
1451826 TCATTTCAAAGCTCACACGAGTTCATGGCACCCTTTAGTCCTTAAA-ATGCAGGATGCCTTTT
1 TCCTTTCAAAGCCCACACGAGTTGATGGCACCCTTTAGTCCTCAAAGA-GCAGGATGCCTTTT
* * * * * * * * * **
1451888 TCGTTTAAAAACCCACATTG-GTTGGTGG-TCCATTTTGTCTTCAAAGAGCAGGACACCTTTT
1 TCCTTTCAAAGCCCACA-CGAGTTGATGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTT
* * * * * * **
1451949 TCTTTTTAAAGCCCGCAC-ATGTTGTTGGCACCCTTTAGTCCTCAAAGAGCAAGACGTATTTT
1 TCCTTTCAAAGCCCACACGA-GTTGATGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTT
* * *
1452011 TCTTTTCAAAGCCCACA-GAAGTTGATGGGACCCTTTAGTCCTCAAATAGCAGGATGCCTTTT
1 TCCTTTCAAAGCCCACACG-AGTTGATGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTT
* * * * *
1452073 TCCTTTCGAAGCCCGCACGAGTTGGTGGCACCCTTCAGTCCTCAAAAAGCAGGATGCCTTTT
1 TCCTTTCAAAGCCCACACGAGTTGATGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTT
*
1452135 TCCTTTCAAAGCCCACACGAGTT-AGTGGCACCCTTTAGTCCTCAAAGAGCAGCATGCCTTTT
1 TCCTTTCAAAGCCCACACGAGTTGA-TGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTT
1452197 T
1 T
1452198 AAGTGGCACC
Statistics
Matches: 306, Mismatches: 56, Indels: 20
0.80 0.15 0.05
Matches are distributed among these distances:
61 45 0.15
62 258 0.84
63 3 0.01
ACGTcount: A:0.24, C:0.26, G:0.19, T:0.30
Consensus pattern (62 bp):
TCCTTTCAAAGCCCACACGAGTTGATGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTT
Found at i:1451915 original size:164 final size:164
Alignment explanation
Indices: 1451603--1451904 Score: 435
Period size: 164 Copynumber: 1.8 Consensus size: 164
1451593 TCCTTTTTCT
* * * * * *
1451603 TTTCAAAGCCTACACGAGTTTGTGGCACCCTTTAGTTCTGAAAGAGCAGGATGCCTTTTTCTTTT
1 TTTCAAAGCCCACACAAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTTTCATTT
** *
1451668 CAAAGCCCACACGAGTTTGTGACACCCTTTAGTCCTCAAAGAGCAAGATGCCCTTTTCCTTTCAA
66 CAAAGCCCACACGAGTTCATGACACCCTTTAGTCCTCAAAGAGCAAGATGCCCTTTTCCTTTAAA
**
1451733 TGCCCACACGAGTTGGTGGCACCATTCAGTCTCC
131 AACCCACACGAGTTGGTGGCACCATTCAGTCTCC
1451767 TTTCAAAGCCCACACAAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTTTCATTT
1 TTTCAAAGCCCACACAAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTTTCATTT
* * * * * *
1451832 CAAAGCTCACACGAGTTCATGGCACCCTTTAGTCCTTAAA-ATGCAGGATGCCTTTTTCGTTTAA
66 CAAAGCCCACACGAGTTCATGACACCCTTTAGTCCTCAAAGA-GCAAGATGCCCTTTTCCTTTAA
1451896 AAACCCACA
130 AAACCCACA
1451905 TTGGTTGGTG
Statistics
Matches: 120, Mismatches: 17, Indels: 2
0.86 0.12 0.01
Matches are distributed among these distances:
163 1 0.01
164 119 0.99
ACGTcount: A:0.25, C:0.27, G:0.18, T:0.29
Consensus pattern (164 bp):
TTTCAAAGCCCACACAAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTTTCATTT
CAAAGCCCACACGAGTTCATGACACCCTTTAGTCCTCAAAGAGCAAGATGCCCTTTTCCTTTAAA
AACCCACACGAGTTGGTGGCACCATTCAGTCTCC
Found at i:1452276 original size:103 final size:103
Alignment explanation
Indices: 1452097--1452286 Score: 308
Period size: 103 Copynumber: 1.8 Consensus size: 103
1452087 GCACGAGTTG
* *
1452097 GTGGCACCCTTCAGTCCTCAAAAAGCAGGATGCCTTTTTCCTTTCAAAGCCCACACGAGTTAGTG
1 GTGGCACCCTTCAGTCCTCAAAAAGCAAGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTAGTG
1452162 GCACCCTTTAGTCCTCAAAGAGCAGCATGCCTTTTTAA
66 GCACCCTTTAGTCCTCAAAGAGCAGCATGCCTTTTTAA
* * * * *
1452200 GTGGCACCCTTTAGTCCTCAAAGAGCAAGACGCTTTTTTCCTTTCAAAGCCCACAGGAGTTGGTG
1 GTGGCACCCTTCAGTCCTCAAAAAGCAAGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTAGTG
*
1452265 GCACCTTTTAGTCCTCAAAGAG
66 GCACCCTTTAGTCCTCAAAGAG
1452287 TAGGACGCAT
Statistics
Matches: 79, Mismatches: 8, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
103 79 1.00
ACGTcount: A:0.25, C:0.28, G:0.20, T:0.27
Consensus pattern (103 bp):
GTGGCACCCTTCAGTCCTCAAAAAGCAAGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTAGTG
GCACCCTTTAGTCCTCAAAGAGCAGCATGCCTTTTTAA
Found at i:1452278 original size:62 final size:62
Alignment explanation
Indices: 1452200--1452463 Score: 402
Period size: 62 Copynumber: 4.3 Consensus size: 62
1452190 GCCTTTTTAA
* *
1452200 GTGGCACCCTTTAGTCCTCAAAGAGCAAGACGCTTTTTTCCTTTCAAAGCCCACAGGAGTTG
1 GTGGCACCCTTTAGTCCTCAAAGAGCAAGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTG
* * * * * * * *
1452262 GTGGCACCTTTTAGTCCTCAAAGAGTAGGACGCATTTTTCTTTTCAAAGCTCATACAAGTTG
1 GTGGCACCCTTTAGTCCTCAAAGAGCAAGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTG
* *
1452324 GTGGCACCCTTTAGTCCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTT
1 GTGGCACCCTTTAGTCCTCAAAGAGCAAGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTG
* *
1452386 GTGGCACCCTTTAGTCCTCAAAGAGCAAGATGCCTTTTTCCTTTCAACGCCCACACGAGTTG
1 GTGGCACCCTTTAGTCCTCAAAGAGCAAGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTG
1452448 GTGGCACCCTTTAGTC
1 GTGGCACCCTTTAGTC
1452464 TCCTTTCAAA
Statistics
Matches: 181, Mismatches: 21, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
62 181 1.00
ACGTcount: A:0.23, C:0.28, G:0.20, T:0.29
Consensus pattern (62 bp):
GTGGCACCCTTTAGTCCTCAAAGAGCAAGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTG
Found at i:1452330 original size:165 final size:165
Alignment explanation
Indices: 1452040--1452362 Score: 466
Period size: 165 Copynumber: 2.0 Consensus size: 165
1452030 AGTTGATGGG
* * * * *
1452040 ACCCTTTAGTCCTCAAATAGCAGGATGCCTTTTTCCTTTCGAAGCCCGCACGAGTTGGTGGCACC
1 ACCCTTTAGTCCTCAAAGAGCAAGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACC
* * *
1452105 CTTCAGTCCTCAAAAAGCAGGATGCCTTTTTCCTTTCAAAGCCCACACGAGTTAGTGGCACCCTT
66 CTTCAGTCCTCAAAAAGCAGGACGCATTTTTCCTTTCAAAGCCCACACAAGTTAGTGGCACCCTT
*
1452170 TAGTCCTCAAAGAGCAGCATGCCTTTTTAAGTGGC
131 TAGTCCTCAAAGAGCAGCACGCCTTTTTAAGTGGC
* *
1452205 ACCCTTTAGTCCTCAAAGAGCAAGACGCTTTTTTCCTTTCAAAGCCCACAGGAGTTGGTGGCACC
1 ACCCTTTAGTCCTCAAAGAGCAAGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACC
* * * * * * * *
1452270 TTTTAGTCCTCAAAGAGTAGGACGCATTTTTCTTTTCAAAGCTCATACAAGTTGGTGGCACCCTT
66 CTTCAGTCCTCAAAAAGCAGGACGCATTTTTCCTTTCAAAGCCCACACAAGTTAGTGGCACCCTT
*
1452335 TAGTCCTCAAAGAGCAGGACGCCTTTTT
131 TAGTCCTCAAAGAGCAGCACGCCTTTTT
1452363 CCTTTCAAAG
Statistics
Matches: 138, Mismatches: 20, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
165 138 1.00
ACGTcount: A:0.24, C:0.27, G:0.20, T:0.29
Consensus pattern (165 bp):
ACCCTTTAGTCCTCAAAGAGCAAGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACC
CTTCAGTCCTCAAAAAGCAGGACGCATTTTTCCTTTCAAAGCCCACACAAGTTAGTGGCACCCTT
TAGTCCTCAAAGAGCAGCACGCCTTTTTAAGTGGC
Found at i:1452369 original size:227 final size:227
Alignment explanation
Indices: 1451974--1452637 Score: 702
Period size: 227 Copynumber: 2.9 Consensus size: 227
1451964 CACATGTTGT
*
1451974 TGGCACCCTTTAGTCCTCAAAGAGCAAGACGTATTTTTCTTTTCAAAGCCCACAGAAGTTGATGG
1 TGGCACCCTTTAGTCCTCAAAGAGCAAGACGTATTTTTCCTTTCAAAGCCCACAGAAGTTGATGG
* * * * * * *
1452039 GACCCTTTAGTCCTCAAATAGCAGGATGCCTTTTTCCTTTCGAAGCCCGCACGAGTTGGTGGCAC
66 CACCCTTTAGTCCTCAAAGAGCAGGACGCATTTTTCCTTTCAAAGCCCACACAAGTTGGTGGCAC
*
1452104 CCTTCAGTCCTCAAAAAGCAGGATGCCTTTTTCCTTTCAAAGCCCACACGAGTTAGTGGCACCCT
131 CCTTCAGTCCTCAAAAAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTAGTGGCACCCT
1452169 TTAGTCCTCAAAGAGC-AGCATGCCTTTTTAAG
196 TTAGTCCTCAAAGAGCAAG-ATGCCTTTTTAAG
* *
1452201 TGGCACCCTTTAGTCCTCAAAGAGCAAGACGCT-TTTTTCCTTTCAAAGCCCACAGGAGTTGGTG
1 TGGCACCCTTTAGTCCTCAAAGAGCAAGACG-TATTTTTCCTTTCAAAGCCCACAGAAGTTGATG
* * * * *
1452265 GCACCTTTTAGTCCTCAAAGAGTAGGACGCATTTTTCTTTTCAAAGCTCATACAAGTTGGTGGCA
65 GCACCCTTTAGTCCTCAAAGAGCAGGACGCATTTTTCCTTTCAAAGCCCACACAAGTTGGTGGCA
* * *
1452330 CCCTTTAGTCCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTTGTGGCACCC
130 CCCTTCAGTCCTCAAAAAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTAGTGGCACCC
**
1452395 TTTAGTCCTCAAAGAGCAAGATGCCTTTTT-CC
195 TTTAGTCCTCAAAGAGCAAGATGCCTTTTTAAG
** * * *** ** * * *
1452427 TTTCA-AC----G-CC-CACACGAGTTGGTGGCACCCTTTAGTCTCCTTTCAAAACCCACACAAG
1 TGGCACCCTTTAGTCCTCA-AAGAGCAAGACGTA---TTT--T-TCCTTTCAAAGCCCACAGAAG
* * * * * *
1452485 TTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTTTCCTTTCTAAGCCCACACGAGTTC
59 TTGATGGCACCCTTTAGTCCTCAAAGAGCAGGACGCATTTTTCCTTTCAAAGCCCACACAAGTTG
* * * * ** * * * *
1452550 GTGGCACCATTTAGTCCTTAAAAAGAAGGATTCCTTTTTCATTTCAAAACTCACACGAGTTGGTG
124 GTGGCACCCTTCAGTCCTCAAAAAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTAGTG
* * *
1452615 G-TCCATTTTGTCCTCAAAGAGCA
189 GCACCCTTTAGTCCTCAAAGAGCA
1452638 GGACAGCTTT
Statistics
Matches: 370, Mismatches: 57, Indels: 22
0.82 0.13 0.05
Matches are distributed among these distances:
219 2 0.01
220 8 0.02
221 1 0.00
223 3 0.01
225 21 0.06
226 132 0.36
227 200 0.54
228 3 0.01
ACGTcount: A:0.25, C:0.27, G:0.19, T:0.29
Consensus pattern (227 bp):
TGGCACCCTTTAGTCCTCAAAGAGCAAGACGTATTTTTCCTTTCAAAGCCCACAGAAGTTGATGG
CACCCTTTAGTCCTCAAAGAGCAGGACGCATTTTTCCTTTCAAAGCCCACACAAGTTGGTGGCAC
CCTTCAGTCCTCAAAAAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTAGTGGCACCCT
TTAGTCCTCAAAGAGCAAGATGCCTTTTTAAG
Found at i:1452470 original size:40 final size:40
Alignment explanation
Indices: 1452424--1452503 Score: 133
Period size: 40 Copynumber: 2.0 Consensus size: 40
1452414 GATGCCTTTT
** *
1452424 TCCTTTCAACGCCCACACGAGTTGGTGGCACCCTTTAGTC
1 TCCTTTCAAAACCCACACAAGTTGGTGGCACCCTTTAGTC
1452464 TCCTTTCAAAACCCACACAAGTTGGTGGCACCCTTTAGTC
1 TCCTTTCAAAACCCACACAAGTTGGTGGCACCCTTTAGTC
1452504 CTCAAAGAGC
Statistics
Matches: 37, Mismatches: 3, Indels: 0
0.93 0.08 0.00
Matches are distributed among these distances:
40 37 1.00
ACGTcount: A:0.21, C:0.34, G:0.17, T:0.28
Consensus pattern (40 bp):
TCCTTTCAAAACCCACACAAGTTGGTGGCACCCTTTAGTC
Found at i:1452508 original size:164 final size:164
Alignment explanation
Indices: 1452316--1452615 Score: 485
Period size: 164 Copynumber: 1.8 Consensus size: 164
1452306 CAAAGCTCAT
1452316 ACAAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACG
1 ACAAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACG
* * * * **
1452381 AGTTTGTGGCACCCTTTAGTCCTCAAAGAGCAA-GATGCCTTTTTCCTTTCAACGCCCACACGAG
66 AGTTCGTGGCACCATTTAGTCCTCAAAAAG-AAGGATGCCTTTTTCATTTCAAAACCCACACGAG
1452445 TTGGTGGCACCCTTTAGTCTCCTTTCAAAACCCAC
130 TTGGTGGCACCCTTTAGTCTCCTTTCAAAACCCAC
* *
1452480 ACAAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTTTCCTTTCTAAGCCCACACG
1 ACAAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACG
* * *
1452545 AGTTCGTGGCACCATTTAGTCCTTAAAAAGAAGGATTCCTTTTTCATTTCAAAACTCACACGAGT
66 AGTTCGTGGCACCATTTAGTCCTCAAAAAGAAGGATGCCTTTTTCATTTCAAAACCCACACGAGT
1452610 TGGTGG
131 TGGTGG
1452616 TCCATTTTGT
Statistics
Matches: 124, Mismatches: 11, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
163 2 0.02
164 122 0.98
ACGTcount: A:0.24, C:0.28, G:0.19, T:0.29
Consensus pattern (164 bp):
ACAAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACG
AGTTCGTGGCACCATTTAGTCCTCAAAAAGAAGGATGCCTTTTTCATTTCAAAACCCACACGAGT
TGGTGGCACCCTTTAGTCTCCTTTCAAAACCCAC
Found at i:1452540 original size:102 final size:102
Alignment explanation
Indices: 1452362--1452565 Score: 338
Period size: 102 Copynumber: 2.0 Consensus size: 102
1452352 GACGCCTTTT
* * *
1452362 TCCTTTCAAAGCCCACACGAGTTTGTGGCACCCTTTAGTCCTCAAAGAGCAAGATGCCTTTTTCC
1 TCCTTTCAAAACCCACACAAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAAGATGCCTTTTTCC
* *
1452427 TTTCAACGCCCACACGAGTTGGTGGCACCCTTTAGTC
66 TTTCAACGCCCACACGAGTTCGTGGCACCATTTAGTC
*
1452464 TCCTTTCAAAACCCACACAAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTTTCC
1 TCCTTTCAAAACCCACACAAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAAGATGCCTTTTTCC
1452529 TTTCTAA-GCCCACACGAGTTCGTGGCACCATTTAGTC
66 TTTC-AACGCCCACACGAGTTCGTGGCACCATTTAGTC
1452566 CTTAAAAAGA
Statistics
Matches: 95, Mismatches: 6, Indels: 2
0.92 0.06 0.02
Matches are distributed among these distances:
102 93 0.98
103 2 0.02
ACGTcount: A:0.23, C:0.31, G:0.18, T:0.28
Consensus pattern (102 bp):
TCCTTTCAAAACCCACACAAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAAGATGCCTTTTTCC
TTTCAACGCCCACACGAGTTCGTGGCACCATTTAGTC
Found at i:1452563 original size:62 final size:62
Alignment explanation
Indices: 1452464--1452835 Score: 417
Period size: 62 Copynumber: 6.0 Consensus size: 62
1452454 CCCTTTAGTC
* *
1452464 TCCTTTCAAAACCCACACAAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTT
1 TCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTT
* * * * * * *
1452526 TCCTTTCTAAGCCCACACGAGTTCGTGGCACCATTTAGTCCTTAAAAAGAAGGATTCCTTTT
1 TCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTT
* * * * * * *
1452588 TCATTTCAAAACTCACACGAGTTGGTGG-TCCATTTTGTCCTCAAAGAGCAGGACAG-CTTTT
1 TCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGA-TGCCTTTT
* * * * * * ** * * **
1452649 TCTTTTCAAAGCCCATATGTGTAGTTGGTGCCCTTTAGTCCTCAAAGAGCAAGAAGTATTTT
1 TCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTT
* *
1452711 TCCTTTCAAAGCCCATA-GAAGTTGGTGGCACCCTTTAATCCTCAAAGAGCAGGATGCCTTTT
1 TCCTTTCAAAGCCCACACG-AGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTT
* *
1452773 TCCTTTCAAAGCCCGCACGAGTTTGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTT
1 TCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTT
1452835 T
1 T
1452836 GACTGGCACC
Statistics
Matches: 256, Mismatches: 49, Indels: 10
0.81 0.16 0.03
Matches are distributed among these distances:
61 48 0.19
62 207 0.81
63 1 0.00
ACGTcount: A:0.25, C:0.25, G:0.19, T:0.31
Consensus pattern (62 bp):
TCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTT
Found at i:1452843 original size:41 final size:41
Alignment explanation
Indices: 1452798--1452876 Score: 122
Period size: 41 Copynumber: 1.9 Consensus size: 41
1452788 CACGAGTTTG
* * * *
1452798 TGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTTTGAC
1 TGGCACCCGTTAGTCATCAAAGAGCAAGACGCCTTTTTGAC
1452839 TGGCACCCGTTAGTCATCAAAGAGCAAGACGCCTTTTT
1 TGGCACCCGTTAGTCATCAAAGAGCAAGACGCCTTTTT
1452877 CCTTTCAAAG
Statistics
Matches: 34, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
41 34 1.00
ACGTcount: A:0.24, C:0.27, G:0.22, T:0.28
Consensus pattern (41 bp):
TGGCACCCGTTAGTCATCAAAGAGCAAGACGCCTTTTTGAC
Found at i:1452962 original size:164 final size:165
Alignment explanation
Indices: 1452683--1452999 Score: 465
Period size: 164 Copynumber: 1.9 Consensus size: 165
1452673 TTGGTGCCCT
* * * *
1452683 TTAGTCCTCAAAGAGCAAGAAGTATTTTTCCTTTCAAAGCCCATAGAAGTTGGTGGCACCCTTTA
1 TTAGTCATCAAAGAGCAAGAAGCATTTTTCCTTTCAAAGCCCACAGAAGTTGGTGGAACCCTTTA
* ** * *
1452748 ATCCTCAAAGAGCAGGATGCCTTTTTCCTTTCAAAGCCCGCACGAGTTTGTGGCACCCTTTAGTC
66 ATCCTCAAAGAGCAAGACACCTTTTTCATTTCAAAGCCCACACGAGTTTGTGGCACCCTTTAGTC
1452813 CTCAAAGAGCAGGATGCCTTTTTGACTGGCACCCG
131 CTCAAAGAGCAGGATGCCTTTTTGACTGGCACCCG
* * * *
1452848 TTAGTCATCAAAGAGCAAGACGCCTTTTTCCTTTCAAAGCCCACA-CAGTTTGTGGAACCCTTTA
1 TTAGTCATCAAAGAGCAAGAAGCATTTTTCCTTTCAAAGCCCACAGAAGTTGGTGGAACCCTTTA
* * * *
1452912 GTCCTCTAAGAGCAAGACACCTTTTTCATTTCAAAGCCTACACGAGTTTGTGGCACCCTTTAGTT
66 ATCCTCAAAGAGCAAGACACCTTTTTCATTTCAAAGCCCACACGAGTTTGTGGCACCCTTTAGTC
*
1452977 CTGAAAGAGCAGGATGCCTTTTT
131 CTCAAAGAGCAGGATGCCTTTTT
1453000 CTTTTCAAAG
Statistics
Matches: 134, Mismatches: 18, Indels: 1
0.88 0.12 0.01
Matches are distributed among these distances:
164 94 0.70
165 40 0.30
ACGTcount: A:0.26, C:0.26, G:0.19, T:0.30
Consensus pattern (165 bp):
TTAGTCATCAAAGAGCAAGAAGCATTTTTCCTTTCAAAGCCCACAGAAGTTGGTGGAACCCTTTA
ATCCTCAAAGAGCAAGACACCTTTTTCATTTCAAAGCCCACACGAGTTTGTGGCACCCTTTAGTC
CTCAAAGAGCAGGATGCCTTTTTGACTGGCACCCG
Found at i:1452975 original size:288 final size:285
Alignment explanation
Indices: 1452573--1453410 Score: 850
Period size: 288 Copynumber: 2.9 Consensus size: 285
1452563 GTCCTTAAAA
** * * * * * *
1452573 AGAAGGATTCCTTTTTCATTTCAAAACTCACACGAGTTGGTGGTCCATTTTGTCCTCAAAGAGCA
1 AGAAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTCGTGGTCCATTTAGTCCTCTAAGAGCA
* * * * * * *
1452638 GGACAGCTTTTTCTTTTCAAAGCCCATATGTG-TAGTTGGTGCCCTTTAGTCCTCAAAGAGCAAG
66 GGACACCTTTTTCATTTCAAAGCCCACACGAGTTAG-TGG-ACCCTTTAGTCCTCAAAGAGCAGG
** * * * *
1452702 AAGTATTTTTCCTTTCAAAGCCCATAGAAGTTGGTGGCACCCTTTAATCCTCAAAGAGCAGGATG
129 AAGCCTTTTTCTTTTCAAAGCCCACAG-AGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAAGATG
* *
1452767 CCTTTTTCCTTTCAAAGCCCGCACGAGTTTGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCT
193 CCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCT
1452832 TTTTGACTGGCACCCGTTAGTCATCAAAG
258 TTTTG-CTGGCACCCGTTAGTCATCAAAG
* * *
1452861 AGCAA-GACGCCTTTTTCCTTTCAAAGCCCACAC-AGTTTGTGGAACCCTTTAGTCCTCTAAGAG
1 AG-AAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTCGTGG-TCCATTTAGTCCTCTAAGAG
* * * * *
1452924 CAAGACACCTTTTTCATTTCAAAGCCTACACGAGTTTGTGGCACCCTTTAGTTCTGAAAGAGCAG
64 CAGGACACCTTTTTCATTTCAAAGCCCACACGAGTTAGTGG-ACCCTTTAGTCCTCAAAGAGCAG
* * * *
1452989 GATGCCTTTTTCTTTTCAAAGCCCACACGAGTTTGTGACACCCTTTAGTCTTCAAAGAGCAAGAT
128 GAAGCCTTTTTCTTTTCAAAGCCCACA-GAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAAGAT
* * * ** *
1453054 GCCCTTTTCCTTTCAATGCCCACACGAGTTGGTGGCACCCTTCAGTCTCCTTTCAAAGCCCA-CA
192 GCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAG--TCC--TCAAAGAGCAGGA
*** * * *
1453118 ---CAAGTTGGTGGCACCCTTTAGTCCTCAAAG
253 TGCCTTTTTGCTGGCACCCGTTAGTCATCAAAG
* * * *
1453148 AGAAGGATGCCTTTTTCCTTTCTAAGCCCACACGCGTTCGTGGCTCCATTTAGTCCT-TAAAAAG
1 AGAAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTCGTGG-TCCATTTAGTCCTCT-AAGAG
** * * * * *
1453212 CAGGATTCCTTTTTCATTTCAAAACCCACACGAGTTGGTGGTCCATTTTGTCCTCAAAGAGCAGG
64 CAGGACACCTTTTTCATTTCAAAGCCCACACGAGTTAGTGGACCCTTTAGTCCTCAAAGAGCAGG
* * * *
1453277 ACA-CCTTTTTCTTTTCAAAGCCCACAGGTGTTGTTGGTACCCTTTAGTCCTCAAAGAGCAAGAC
129 A-AGCCTTTTTCTTTTCAAAGCCCACA-GAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAAGAT
** * * *
1453341 GTATTTTTCCTTTCAAAGCCCATA-GAAGTTGGTGGCACCCTTTAGTCCTAAAAGAGAAGGATGC
192 GCCTTTTTCCTTTCAAAGCCCACACG-AGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGC
1453405 CTTTTT
256 CTTTTT
1453411 CCTTTCAAAG
Statistics
Matches: 444, Mismatches: 89, Indels: 35
0.78 0.16 0.06
Matches are distributed among these distances:
283 6 0.01
284 1 0.00
285 3 0.01
286 3 0.01
287 170 0.38
288 244 0.55
289 5 0.01
290 3 0.01
291 1 0.00
292 8 0.02
ACGTcount: A:0.25, C:0.26, G:0.19, T:0.31
Consensus pattern (285 bp):
AGAAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTCGTGGTCCATTTAGTCCTCTAAGAGCA
GGACACCTTTTTCATTTCAAAGCCCACACGAGTTAGTGGACCCTTTAGTCCTCAAAGAGCAGGAA
GCCTTTTTCTTTTCAAAGCCCACAGAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAAGATGCCT
TTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTT
TGCTGGCACCCGTTAGTCATCAAAG
Found at i:1453101 original size:62 final size:62
Alignment explanation
Indices: 1452839--1453101 Score: 341
Period size: 62 Copynumber: 4.3 Consensus size: 62
1452829 CCTTTTTGAC
* *
1452839 TGGCACCCGTTAGTCATCAAAGAGCAAGACGCCTTTTTCCTTTCAAAGCCCACAC-AGTTTG
1 TGGCACCCTTTAGTCTTCAAAGAGCAAGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTTG
* * * * * *
1452900 TGGAACCCTTTAGTCCTCTAAGAGCAAGACACCTTTTTCATTTCAAAGCCTACACGAGTTTG
1 TGGCACCCTTTAGTCTTCAAAGAGCAAGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTTG
* * * *
1452962 TGGCACCCTTTAGT-TCTGAAAGAGCAGGATGCCTTTTTCTTTTCAAAGCCCACACGAGTTTG
1 TGGCACCCTTTAGTCT-TCAAAGAGCAAGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTTG
* * * * *
1453024 TGACACCCTTTAGTCTTCAAAGAGCAAGATGCCCTTTTCCTTTCAATGCCCACACGAGTTGG
1 TGGCACCCTTTAGTCTTCAAAGAGCAAGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTTG
*
1453086 TGGCACCCTTCAGTCT
1 TGGCACCCTTTAGTCT
1453102 CCTTTCAAAG
Statistics
Matches: 174, Mismatches: 25, Indels: 5
0.85 0.12 0.02
Matches are distributed among these distances:
61 48 0.28
62 125 0.72
63 1 0.01
ACGTcount: A:0.24, C:0.28, G:0.18, T:0.30
Consensus pattern (62 bp):
TGGCACCCTTTAGTCTTCAAAGAGCAAGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTTG
Found at i:1453106 original size:40 final size:40
Alignment explanation
Indices: 1453061--1453140 Score: 133
Period size: 40 Copynumber: 2.0 Consensus size: 40
1453051 GATGCCCTTT
* *
1453061 TCCTTTCAATGCCCACACGAGTTGGTGGCACCCTTCAGTC
1 TCCTTTCAAAGCCCACACAAGTTGGTGGCACCCTTCAGTC
*
1453101 TCCTTTCAAAGCCCACACAAGTTGGTGGCACCCTTTAGTC
1 TCCTTTCAAAGCCCACACAAGTTGGTGGCACCCTTCAGTC
1453141 CTCAAAGAGA
Statistics
Matches: 37, Mismatches: 3, Indels: 0
0.93 0.08 0.00
Matches are distributed among these distances:
40 37 1.00
ACGTcount: A:0.20, C:0.34, G:0.19, T:0.28
Consensus pattern (40 bp):
TCCTTTCAAAGCCCACACAAGTTGGTGGCACCCTTCAGTC
Found at i:1453110 original size:164 final size:164
Alignment explanation
Indices: 1452940--1453252 Score: 430
Period size: 164 Copynumber: 1.9 Consensus size: 164
1452930 ACCTTTTTCA
* * * * * * *
1452940 TTTCAAAGCCTACACGAGTTTGTGGCACCCTTTAGTTCTGAAAGAGCAGGATGCCTTTTTCTTTT
1 TTTCAAAGCCCACACAAGTTGGTGGCACCCTTTAGTCCTCAAAGAGAAGGATGCCTTTTTCCTTT
* * * *
1453005 CAAAGCCCACACGAGTTTGTGACACCCTTTAGT-CTTCAAAGAGCAAGATGCCCTTTTCCTTTCA
66 CAAAGCCCACACGAGTTCGTGACACCATTTAGTCCTT-AAAAAGCAAGATGCCCTTTTCATTTCA
**
1453069 ATGCCCACACGAGTTGGTGGCACCCTTCAGTCTCC
130 AAACCCACACGAGTTGGTGGCACCCTTCAGTCTCC
1453104 TTTCAAAGCCCACACAAGTTGGTGGCACCCTTTAGTCCTCAAAGAGAAGGATGCCTTTTTCCTTT
1 TTTCAAAGCCCACACAAGTTGGTGGCACCCTTTAGTCCTCAAAGAGAAGGATGCCTTTTTCCTTT
* * * * * * *
1453169 CTAAGCCCACACGCGTTCGTGGCTCCATTTAGTCCTTAAAAAGCAGGATTCCTTTTTCATTTCAA
66 CAAAGCCCACACGAGTTCGTGACACCATTTAGTCCTTAAAAAGCAAGATGCCCTTTTCATTTCAA
1453234 AACCCACACGAGTTGGTGG
131 AACCCACACGAGTTGGTGG
1453253 TCCATTTTGT
Statistics
Matches: 128, Mismatches: 20, Indels: 2
0.85 0.13 0.01
Matches are distributed among these distances:
164 125 0.98
165 3 0.02
ACGTcount: A:0.24, C:0.27, G:0.19, T:0.30
Consensus pattern (164 bp):
TTTCAAAGCCCACACAAGTTGGTGGCACCCTTTAGTCCTCAAAGAGAAGGATGCCTTTTTCCTTT
CAAAGCCCACACGAGTTCGTGACACCATTTAGTCCTTAAAAAGCAAGATGCCCTTTTCATTTCAA
AACCCACACGAGTTGGTGGCACCCTTCAGTCTCC
Found at i:1453136 original size:226 final size:221
Alignment explanation
Indices: 1452679--1453274 Score: 589
Period size: 226 Copynumber: 2.7 Consensus size: 221
1452669 GTAGTTGGTG
** * *
1452679 CCCTTTAGTCCTCAAAGAGCAAGAAGTATTTTTCCTTTCAAAGCCCATA-GAAGTTGGTGGCACC
1 CCCTTTAGTCCTCAAAGAGCAAGAA-CCTTTTTCCTTTCAAAGCCCACACG-AGTTCGTGGCACC
* * * *
1452743 CTTTAATCCTCAAAGAGCAGGATGCCTTTTTCCTTTCAAAGCCCGCACGAGTTTGTGGCACCCTT
64 CTTTAGTCCTCAAAGAGCAGGATGCCTTTTTCATTTCAAAGCCCACACGAGTTTGTGACACCCTT
* * * * *
1452808 TAGTCCTCAAAGAGCAGGATGCCTTTTTGACTGGCACCCGTTAGTCATCAAAGAGCAAGACGCCT
129 TAGTCCTCAAAGAGCAAGATGCCTTTTTCAATGCCACACG-TAGT-ATCAAAGAGC-A-ACGCCT
* *
1452873 TTTTCCTTTCAAAGCCCACACAGTTTGTGGAA
190 TTCTCCTTTCAAAGCCCACACAGTTGGTGGAA
* * * *
1452905 CCCTTTAGTCCTCTAAGAGCAAGACACCTTTTTCATTTCAAAGCCTACACGAGTTTGTGGCACCC
1 CCCTTTAGTCCTCAAAGAGCAAGA-ACCTTTTTCCTTTCAAAGCCCACACGAGTTCGTGGCACCC
* * *
1452970 TTTAGTTCTGAAAGAGCAGGATGCCTTTTTCTTTTCAAAGCCCACACGAGTTTGTGACACCCTTT
65 TTTAGTCCTCAAAGAGCAGGATGCCTTTTTCATTTCAAAGCCCACACGAGTTTGTGACACCCTTT
* ***
1453035 AGTCTTCAAAGAGCAAGATGCCCTTTTCCTTTCAATGCCCACACG-AGT-T-GGTG-GC-AC-CC
130 AGTCCTCAAAGAGCAAGATG-CC--TT--TTTCAATG-CCACACGTAGTATCAAAGAGCAACGCC
*
1453094 TTCAGTCTCCTTTCAAAGCCCACACAAGTTGGTGGCA
189 TT---TCTCCTTTCAAAGCCCACAC-AGTTGGTGGAA
* * * *
1453131 CCCTTTAGTCCTCAAAGAG-AAGGATGCCTTTTTCCTTTCTAAGCCCACACGCGTTCGTGGCTCC
1 CCCTTTAGTCCTCAAAGAGCAA-GA-ACCTTTTTCCTTTCAAAGCCCACACGAGTTCGTGGCACC
* * * * * * ** *
1453195 ATTTAGTCCTTAAAAAGCAGGATTCCTTTTTCATTTCAAAACCCACACGAGTTGGTG-GTCCATT
64 CTTTAGTCCTCAAAGAGCAGGATGCCTTTTTCATTTCAAAGCCCACACGAGTTTGTGACACCCTT
*
1453259 TTGTCCTCAAAGAGCA
129 TAGTCCTCAAAGAGCA
1453275 GGACACCTTT
Statistics
Matches: 310, Mismatches: 47, Indels: 27
0.81 0.12 0.07
Matches are distributed among these distances:
222 4 0.01
223 2 0.01
225 39 0.13
226 243 0.78
227 5 0.02
228 1 0.00
229 2 0.01
230 3 0.01
231 6 0.02
232 5 0.02
ACGTcount: A:0.25, C:0.27, G:0.18, T:0.30
Consensus pattern (221 bp):
CCCTTTAGTCCTCAAAGAGCAAGAACCTTTTTCCTTTCAAAGCCCACACGAGTTCGTGGCACCCT
TTAGTCCTCAAAGAGCAGGATGCCTTTTTCATTTCAAAGCCCACACGAGTTTGTGACACCCTTTA
GTCCTCAAAGAGCAAGATGCCTTTTTCAATGCCACACGTAGTATCAAAGAGCAACGCCTTTCTCC
TTTCAAAGCCCACACAGTTGGTGGAA
Found at i:1453176 original size:62 final size:62
Alignment explanation
Indices: 1453101--1453534 Score: 539
Period size: 62 Copynumber: 7.0 Consensus size: 62
1453091 CCCTTCAGTC
* *
1453101 TCCTTTCAAAGCCCACACAAGTTGGTGGCACCCTTTAGTCCTCAAAGAGAAGGATGCCTTTT
1 TCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTT
* * * * * * * *
1453163 TCCTTTCTAAGCCCACACGCGTTCGTGGCTCCATTTAGTCCTTAAAAAGCAGGATTCCTTTT
1 TCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTT
* * * * * **
1453225 TCATTTCAAAACCCACACGAGTTGGTGG-TCCATTTTGTCCTCAAAGAGCAGGACACCTTTT
1 TCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTT
* * * * * * * **
1453286 TCTTTTCAAAGCCCACAGGTGTTGTTGGTACCCTTTAGTCCTCAAAGAGCAAGACGTATTTT
1 TCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTT
* * *
1453348 TCCTTTCAAAGCCCATA-GAAGTTGGTGGCACCCTTTAGTCCTAAAAGAGAAGGATGCCTTTT
1 TCCTTTCAAAGCCCACACG-AGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTT
* * *
1453410 TCCTTTCAAAGCCCGCACGAGTTGGTGGCACCCTTTAGTCCTCAAAAAGCAGGATGCCTTTC
1 TCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTT
**
1453472 TCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCATCATGCCTTTT
1 TCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTT
1453534 T
1 T
1453535 GAATGGCACC
Statistics
Matches: 315, Mismatches: 54, Indels: 6
0.84 0.14 0.02
Matches are distributed among these distances:
61 52 0.17
62 262 0.83
63 1 0.00
ACGTcount: A:0.24, C:0.27, G:0.19, T:0.30
Consensus pattern (62 bp):
TCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTT
Found at i:1453178 original size:102 final size:102
Alignment explanation
Indices: 1453002--1453191 Score: 285
Period size: 102 Copynumber: 1.9 Consensus size: 102
1452992 GCCTTTTTCT
* * *
1453002 TTTCAAAGCCCACACGAGTTTGTGACACCCTTTAGTCTTCAAAGAGCAAGATGCCCTTTTCCTTT
1 TTTCAAAGCCCACACAAGTTGGTGACACCCTTTAGTCCTCAAAGAGCAAGATGCCCTTTTCCTTT
*
1453067 CAATGCCCACACGAGTTGGTGGCACCCTTCAGTCTCC
66 CAATGCCCACACGAGTTCGTGGCACCCTTCAGTCTCC
* *
1453104 TTTCAAAGCCCACACAAGTTGGTGGCACCCTTTAGTCCTCAAAGAG-AAGGATGCCTTTTTCCTT
1 TTTCAAAGCCCACACAAGTTGGTGACACCCTTTAGTCCTCAAAGAGCAA-GATGCCCTTTTCCTT
*
1453168 TCTAA-GCCCACACGCGTTCGTGGC
65 TC-AATGCCCACACGAGTTCGTGGC
1453192 TCCATTTAGT
Statistics
Matches: 79, Mismatches: 7, Indels: 4
0.88 0.08 0.04
Matches are distributed among these distances:
101 2 0.03
102 75 0.95
103 2 0.03
ACGTcount: A:0.23, C:0.31, G:0.19, T:0.28
Consensus pattern (102 bp):
TTTCAAAGCCCACACAAGTTGGTGACACCCTTTAGTCCTCAAAGAGCAAGATGCCCTTTTCCTTT
CAATGCCCACACGAGTTCGTGGCACCCTTCAGTCTCC
Found at i:1453575 original size:41 final size:41
Alignment explanation
Indices: 1453497--1453575 Score: 113
Period size: 41 Copynumber: 1.9 Consensus size: 41
1453487 CACGAGTTGG
* * *
1453497 TGGCACCCTTTAGTCCTCAAAGAGCATCATGCCTTTTTGAA
1 TGGCACCCTCTAGTCCTCAAAGAGCAACACGCCTTTTTGAA
* *
1453538 TGGCACCCTCTAGTCCTCAAAGAGCAAGACGCTTTTTT
1 TGGCACCCTCTAGTCCTCAAAGAGCAACACGCCTTTTT
1453576 CCTTTCAAAG
Statistics
Matches: 33, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
41 33 1.00
ACGTcount: A:0.24, C:0.28, G:0.18, T:0.30
Consensus pattern (41 bp):
TGGCACCCTCTAGTCCTCAAAGAGCAACACGCCTTTTTGAA
Found at i:1453635 original size:102 final size:103
Alignment explanation
Indices: 1453435--1453636 Score: 307
Period size: 103 Copynumber: 2.0 Consensus size: 103
1453425 CACGAGTTGG
* * *
1453435 TGGCACCCTTTAGTCCTCAAAAAGCAGGATGCCTTTCTCCTTTCAAAGCCCACACGAGTTGGTGG
1 TGGCACCCTCTAGTCCTCAAAAAGCAAGACGCCTTTCTCCTTTCAAAGCCCACACGAGTTGGTGG
* **
1453500 CACCCTTTAGTCCTCAAAGAGCATCATGCCTTTTTGAA
66 CACCCTTTAGTCCTCAAAGAGCAACACACCTTTTTGAA
* * *
1453538 TGGCACCCTCTAGTCCTCAAAGAGCAAGACGCTTTTTTCCTTTCAAAGCCCACAC-AGTTGGTGG
1 TGGCACCCTCTAGTCCTCAAAAAGCAAGACGCCTTTCTCCTTTCAAAGCCCACACGAGTTGGTGG
*
1453602 CACCCTTTAGTCCTCAAAGAGCAAGACACCTTTTT
66 CACCCTTTAGTCCTCAAAGAGCAACACACCTTTTT
1453637 CATTTCAAAG
Statistics
Matches: 89, Mismatches: 10, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
102 40 0.45
103 49 0.55
ACGTcount: A:0.25, C:0.30, G:0.18, T:0.28
Consensus pattern (103 bp):
TGGCACCCTCTAGTCCTCAAAAAGCAAGACGCCTTTCTCCTTTCAAAGCCCACACGAGTTGGTGG
CACCCTTTAGTCCTCAAAGAGCAACACACCTTTTTGAA
Found at i:1453645 original size:164 final size:165
Alignment explanation
Indices: 1453373--1453684 Score: 475
Period size: 164 Copynumber: 1.9 Consensus size: 165
1453363 TAGAAGTTGG
* * *
1453373 TGGCACCCTTTAGTCCTAAAAGAGAAGGATGCCTTTTTCCTTTCAAAGCCCGCACGAGTTGGTGG
1 TGGCACCCTCTAGTCCTAAAAGAGAAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGG
* ** *
1453438 CACCCTTTAGTCCTCAAAAAGCAGGATGCCTTTCTCCTTTCAAAGCCCACACGAGTTGGTGGCAC
66 CACCCTTTAGTCCTCAAAAAGCAAGACACCTTTCTCATTTCAAAGCCCACACGAGTTGGTGGCAC
1453503 CCTTTAGTCCTCAAAGAGCATCATGCCTTTTTGAA
131 CCTTTAGTCCTCAAAGAGCATCATGCCTTTTTGAA
* *
1453538 TGGCACCCTCTAGTCCTCAAAGAGCAA-GACGCTTTTTTCCTTTCAAAGCCCACAC-AGTTGGTG
1 TGGCACCCTCTAGTCCTAAAAGAG-AAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTG
* * * *
1453601 GCACCCTTTAGTCCTCAAAGAGCAAGACACCTTTTTCATTTCAAAGCCTACACGAGTTGTTGGCA
65 GCACCCTTTAGTCCTCAAAAAGCAAGACACCTTTCTCATTTCAAAGCCCACACGAGTTGGTGGCA
*
1453666 CCCTTTAGTCCTCGAAGAG
130 CCCTTTAGTCCTCAAAGAG
1453685 TAGGACGCCT
Statistics
Matches: 132, Mismatches: 14, Indels: 3
0.89 0.09 0.02
Matches are distributed among these distances:
164 83 0.63
165 47 0.36
166 2 0.02
ACGTcount: A:0.25, C:0.29, G:0.19, T:0.28
Consensus pattern (165 bp):
TGGCACCCTCTAGTCCTAAAAGAGAAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGG
CACCCTTTAGTCCTCAAAAAGCAAGACACCTTTCTCATTTCAAAGCCCACACGAGTTGGTGGCAC
CCTTTAGTCCTCAAAGAGCATCATGCCTTTTTGAA
Found at i:1453669 original size:62 final size:62
Alignment explanation
Indices: 1453538--1454131 Score: 762
Period size: 62 Copynumber: 9.6 Consensus size: 62
1453528 CCTTTTTGAA
* * *
1453538 TGGCACCCTCTAGTCCTCAAAGAGCAAGACGCTTTTTTCCTTTCAAAGCCCACAC-AGTTGG
1 TGGCACCCTTTAGTCCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTGG
* * * * *
1453599 TGGCACCCTTTAGTCCTCAAAGAGCAAGACACCTTTTTCATTTCAAAGCCTACACGAGTTGT
1 TGGCACCCTTTAGTCCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTGG
* * * *
1453661 TGGCACCCTTTAGTCCTCGAAGAGTAGGACGCCTTTTTCCTTTCAAAGCTCACACAAGTTGG
1 TGGCACCCTTTAGTCCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTGG
* * * *
1453723 TGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTATTTCATTTCAAAGCCCACACGAGTTCG
1 TGGCACCCTTTAGTCCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTGG
* * * * * * * * *
1453785 TGGCACCCTTTAGTCCTTAAAAACCAGGATGCCTTTTTCGTTTAAAAACCCACATGGGTTGG
1 TGGCACCCTTTAGTCCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTGG
* * * * * * *
1453847 TGG-TCCATTTTGTCCTCAAAGAGCAGGACACCTTTTTCTTTTCAAAGCCCACACGTGTTGT
1 TGGCACCCTTTAGTCCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTGG
* * ** *
1453908 TGGTACCCTTTAGTCCTCAAAGAGCAAGACGTATTTTTCCTTTCAAAGCCCATA-GAAGTTGG
1 TGGCACCCTTTAGTCCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACG-AGTTGG
* * *
1453970 TGGCACCCTTTAGTCCTCAAAGAGAAGGATGCCTTTTTCCTTTCAAAGCCCGCACGAGTTGG
1 TGGCACCCTTTAGTCCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTGG
* *
1454032 TGGCACCCTTTAGTCCTCAAAAAGCAGGATGCCTTTTTCCTTTCAAAGCCCACACGAGTTGG
1 TGGCACCCTTTAGTCCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTGG
* *
1454094 TGGCACCCTTTAGTCCTCAAAGAGCAGCATGCCTTTTT
1 TGGCACCCTTTAGTCCTCAAAGAGCAGGACGCCTTTTT
1454132 AAGTGGCACC
Statistics
Matches: 458, Mismatches: 71, Indels: 7
0.85 0.13 0.01
Matches are distributed among these distances:
61 98 0.21
62 359 0.78
63 1 0.00
ACGTcount: A:0.24, C:0.27, G:0.19, T:0.29
Consensus pattern (62 bp):
TGGCACCCTTTAGTCCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTGG
Found at i:1453723 original size:226 final size:227
Alignment explanation
Indices: 1453315--1453748 Score: 676
Period size: 226 Copynumber: 1.9 Consensus size: 227
1453305 TGTTGTTGGT
* *
1453315 ACCCTTTAGTCCTCAAAGAGCAAGACGTATTTTTCCTTTCAAAGCCCATAGAAGTTGGTGGCACC
1 ACCCTCTAGTCCTCAAAGAGCAAGACGTATTTTTCCTTTCAAAGCCCACAGAAGTTGGTGGCACC
** * *
1453380 CTTTAGTCCTAAAAGAGAAGGATGCCTTTTTCCTTTCAAAGCCCGCACGAGTTGGTGGCACCCTT
66 CTTTAGTCCTAAAAGAGAAGGACACCTTTTTCATTTCAAAGCCCACACGAGTTGGTGGCACCCTT
* *
1453445 TAGTCCTCAAAAAGCAGGATGCCTTTCTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAG
131 TAGTCCTCAAAAAGCAGGACGCCTTTCTCCTTTCAAAGCCCACACAAGTTGGTGGCACCCTTTAG
1453510 TCCTCAAAGAGCATCATGCCTTTTTGAATGGC
196 TCCTCAAAGAGCATCATGCCTTTTTGAATGGC
*
1453542 ACCCTCTAGTCCTCAAAGAGCAAGACGCT-TTTTTCCTTTCAAAGCCCACA-CAGTTGGTGGCAC
1 ACCCTCTAGTCCTCAAAGAGCAAGACG-TATTTTTCCTTTCAAAGCCCACAGAAGTTGGTGGCAC
* * *
1453605 CCTTTAGTCCTCAAAGAGCAA-GACACCTTTTTCATTTCAAAGCCTACACGAGTTGTTGGCACCC
65 CCTTTAGTCCTAAAAGAG-AAGGACACCTTTTTCATTTCAAAGCCCACACGAGTTGGTGGCACCC
* * * * *
1453669 TTTAGTCCTCGAAGAGTAGGACGCCTTTTTCCTTTCAAAGCTCACACAAGTTGGTGGCACCCTTT
129 TTTAGTCCTCAAAAAGCAGGACGCCTTTCTCCTTTCAAAGCCCACACAAGTTGGTGGCACCCTTT
1453734 AGTCCTCAAAGAGCA
194 AGTCCTCAAAGAGCA
1453749 GGATGCCTAT
Statistics
Matches: 188, Mismatches: 17, Indels: 5
0.90 0.08 0.02
Matches are distributed among these distances:
226 139 0.74
227 48 0.26
228 1 0.01
ACGTcount: A:0.25, C:0.28, G:0.19, T:0.28
Consensus pattern (227 bp):
ACCCTCTAGTCCTCAAAGAGCAAGACGTATTTTTCCTTTCAAAGCCCACAGAAGTTGGTGGCACC
CTTTAGTCCTAAAAGAGAAGGACACCTTTTTCATTTCAAAGCCCACACGAGTTGGTGGCACCCTT
TAGTCCTCAAAAAGCAGGACGCCTTTCTCCTTTCAAAGCCCACACAAGTTGGTGGCACCCTTTAG
TCCTCAAAGAGCATCATGCCTTTTTGAATGGC
Found at i:1454169 original size:41 final size:41
Alignment explanation
Indices: 1454093--1454172 Score: 135
Period size: 41 Copynumber: 2.0 Consensus size: 41
1454083 ACACGAGTTG
*
1454093 GTGGCACCCTTTAGTCCTCAAAGAGCAGCATGCCTTTTTAA
1 GTGGCACCCTTTAGTCCTCAAAGAGCAGCACGCCTTTTTAA
1454134 GTGGCACCCTTTAGTCCTCAAAGAGCAAG-ACGCCTTTTT
1 GTGGCACCCTTTAGTCCTCAAAGAGC-AGCACGCCTTTTT
1454173 CCTTTCGAAG
Statistics
Matches: 37, Mismatches: 1, Indels: 2
0.93 0.03 0.05
Matches are distributed among these distances:
41 35 0.95
42 2 0.05
ACGTcount: A:0.24, C:0.28, G:0.20, T:0.29
Consensus pattern (41 bp):
GTGGCACCCTTTAGTCCTCAAAGAGCAGCACGCCTTTTTAA
Found at i:1454242 original size:164 final size:165
Alignment explanation
Indices: 1453969--1454281 Score: 495
Period size: 164 Copynumber: 1.9 Consensus size: 165
1453959 ATAGAAGTTG
* *
1453969 GTGGCACCCTTTAGTCCTCAAAGAGAAGGATGCCTTTTTCCTTTCAAAGCCCGCACGAGTTGGTG
1 GTGGCACCCTTTAGTCCTCAAAGAGAAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTG
* ** * *
1454034 GCACCCTTTAGTCCTCAAAAAGCAGGATGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCA
66 GCACCCTTTAGTCCTCAAAAAGCAAGACACCTTTTTCATTTCAAAGCCCACACGAGTTGGTGCCA
1454099 CCCTTTAGTCCTCAAAGAGCAGCATGCCTTTTTAA
131 CCCTTTAGTCCTCAAAGAGCAGCATGCCTTTTTAA
*
1454134 GTGGCACCCTTTAGTCCTCAAAGAGCAA-GACGCCTTTTTCCTTTCGAAGCCCACAC-AGTTGGT
1 GTGGCACCCTTTAGTCCTCAAAGAG-AAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGT
* * *
1454197 GGCACCCTTTAGTCCTCAAAGAGCAAGACACCTTTTTCATTTCAAAGCCTACACGAGTTGTTGCC
65 GGCACCCTTTAGTCCTCAAAAAGCAAGACACCTTTTTCATTTCAAAGCCCACACGAGTTGGTGCC
*
1454262 ACCCTTTAGTCCTCGAAGAG
130 ACCCTTTAGTCCTCAAAGAG
1454282 TAGGACACCT
Statistics
Matches: 135, Mismatches: 12, Indels: 3
0.90 0.08 0.02
Matches are distributed among these distances:
164 83 0.61
165 50 0.37
166 2 0.01
ACGTcount: A:0.24, C:0.29, G:0.20, T:0.27
Consensus pattern (165 bp):
GTGGCACCCTTTAGTCCTCAAAGAGAAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTG
GCACCCTTTAGTCCTCAAAAAGCAAGACACCTTTTTCATTTCAAAGCCCACACGAGTTGGTGCCA
CCCTTTAGTCCTCAAAGAGCAGCATGCCTTTTTAA
Found at i:1454289 original size:62 final size:62
Alignment explanation
Indices: 1454134--1454728 Score: 739
Period size: 62 Copynumber: 9.6 Consensus size: 62
1454124 GCCTTTTTAA
* *
1454134 GTGGCACCCTTTAGTCCTCAAAGAGCAAGACGCCTTTTTCCTTTCGAAGCCCACAC-AGTTG
1 GTGGCACCCTTTAGTCCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTG
* * * *
1454195 GTGGCACCCTTTAGTCCTCAAAGAGCAAGACACCTTTTTCATTTCAAAGCCTACACGAGTTG
1 GTGGCACCCTTTAGTCCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTG
* * * * * * *
1454257 TTGCCACCCTTTAGTCCTCGAAGAGTAGGACACCTTTTTCCTTTCAAAGCTCACACAAGTTG
1 GTGGCACCCTTTAGTCCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTG
* * * *
1454319 GTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTATTTCATTTCAAAGCCCACACGAGTTC
1 GTGGCACCCTTTAGTCCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTG
* * * * * * * *
1454381 GTGGCACCCTTTAGTCCTTGAAA-ACCAGGATGCCTTTTTCGTTTAAAATCCCACATGGGTTG
1 GTGGCACCCTTTAGTCC-TCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTG
* * * * * * *
1454443 GTGG-TCCATTTTGTCCTCAAACAGCAGGACACCTTTTTCTTTTCAAAGCCCACACGTGTTG
1 GTGGCACCCTTTAGTCCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTG
* * * ** *
1454504 TTGGTACCCTTTAGTCCTCAAAGAGCAAGACGTATTTTTCCTTTCAAAGCCCATA-GAAGTTG
1 GTGGCACCCTTTAGTCCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACG-AGTTG
* * *
1454566 GTGGCACCCTTTAGTCCTCAAAGAGAAGGATGCCTTTTTCCTTTCAAAGCCCGCACGAGTTG
1 GTGGCACCCTTTAGTCCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTG
* *
1454628 GTGGCACCCTTTAGTCCTCAAAAAGCAGGATGCCTTTTTCCTTTCAAAGCCCACACGAGTTG
1 GTGGCACCCTTTAGTCCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTG
* *
1454690 GTGGCACCCTTTAGTCCTCAAAGAGCAGCATGCCTTTTT
1 GTGGCACCCTTTAGTCCTCAAAGAGCAGGACGCCTTTTT
1454729 AAGTGGCACC
Statistics
Matches: 457, Mismatches: 71, Indels: 11
0.85 0.13 0.02
Matches are distributed among these distances:
60 4 0.01
61 96 0.21
62 352 0.77
63 5 0.01
ACGTcount: A:0.24, C:0.28, G:0.19, T:0.29
Consensus pattern (62 bp):
GTGGCACCCTTTAGTCCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTG
Found at i:1454320 original size:226 final size:227
Alignment explanation
Indices: 1453912--1454353 Score: 681
Period size: 226 Copynumber: 2.0 Consensus size: 227
1453902 TGTTGTTGGT
* *
1453912 ACCCTTTAGTCCTCAAAGAGCAAGACGTATTTTTCCTTTCAAAGCCCATAGAAGTTGGTGGCACC
1 ACCCTTTAGTCCTCAAAGAGCAAGACGCATTTTTCCTTTCAAAGCCCACAGAAGTTGGTGGCACC
** * * *
1453977 CTTTAGTCCTCAAAGAGAAGGATGCCTTTTTCCTTTCAAAGCCCGCACGAGTTGGTGGCACCCTT
66 CTTTAGTCCTCAAAGAGAAGGACACCTTTTTCATTTCAAAGCCCACACGAGTTGGTGCCACCCTT
** *
1454042 TAGTCCTCAAAAAGCAGGATGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAG
131 TAGTCCTCAAAAAGCAGGACACCTTTTTCCTTTCAAAGCCCACACAAGTTGGTGGCACCCTTTAG
1454107 TCCTCAAAGAGCAGCATGCCTTTTTAAGTGGC
196 TCCTCAAAGAGCAGCATGCCTTTTTAAGTGGC
* * *
1454139 ACCCTTTAGTCCTCAAAGAGCAAGACGCCTTTTTCCTTTCGAAGCCCACA-CAGTTGGTGGCACC
1 ACCCTTTAGTCCTCAAAGAGCAAGACGCATTTTTCCTTTCAAAGCCCACAGAAGTTGGTGGCACC
* *
1454203 CTTTAGTCCTCAAAGAGCAA-GACACCTTTTTCATTTCAAAGCCTACACGAGTTGTTGCCACCCT
66 CTTTAGTCCTCAAAGAG-AAGGACACCTTTTTCATTTCAAAGCCCACACGAGTTGGTGCCACCCT
* * * *
1454267 TTAGTCCTCGAAGAGTAGGACACCTTTTTCCTTTCAAAGCTCACACAAGTTGGTGGCACCCTTTA
130 TTAGTCCTCAAAAAGCAGGACACCTTTTTCCTTTCAAAGCCCACACAAGTTGGTGGCACCCTTTA
*
1454332 GTCCTCAAAGAGCAGGATGCCT
195 GTCCTCAAAGAGCAGCATGCCT
1454354 ATTTCATTTC
Statistics
Matches: 194, Mismatches: 20, Indels: 3
0.89 0.09 0.01
Matches are distributed among these distances:
226 146 0.75
227 48 0.25
ACGTcount: A:0.25, C:0.28, G:0.19, T:0.28
Consensus pattern (227 bp):
ACCCTTTAGTCCTCAAAGAGCAAGACGCATTTTTCCTTTCAAAGCCCACAGAAGTTGGTGGCACC
CTTTAGTCCTCAAAGAGAAGGACACCTTTTTCATTTCAAAGCCCACACGAGTTGGTGCCACCCTT
TAGTCCTCAAAAAGCAGGACACCTTTTTCCTTTCAAAGCCCACACAAGTTGGTGGCACCCTTTAG
TCCTCAAAGAGCAGCATGCCTTTTTAAGTGGC
Found at i:1454839 original size:164 final size:165
Alignment explanation
Indices: 1454566--1454869 Score: 477
Period size: 164 Copynumber: 1.8 Consensus size: 165
1454556 ATAGAAGTTG
* ** *
1454566 GTGGCACCCTTTAGTCCTCAAAGAGAAGGATGCCTTTTTCCTTTCAAAGCCCGCACGAGTTGGTG
1 GTGGCACCCTTTAGCCCTCAAAGAGAAGGACACCTTTTTCCTTTCAAAGCCCACACGAGTTGGTG
* ** * *
1454631 GCACCCTTTAGTCCTCAAAAAGCAGGATGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCA
66 GCACCCTTTAGTCCTCAAAAAGCAAGACACCTTTTTCATTTCAAAGCCCACACGAGTTGCTGGCA
1454696 CCCTTTAGTCCTCAAAGAGCAGCATGCCTTTTTAA
131 CCCTTTAGTCCTCAAAGAGCAGCATGCCTTTTTAA
*
1454731 GTGGCACCCTTTAGCCCTCAAAGAGCAA-GACACCTTTTTCCTTTCGAAGCCCACAC-AGTTGGT
1 GTGGCACCCTTTAGCCCTCAAAGAG-AAGGACACCTTTTTCCTTTCAAAGCCCACACGAGTTGGT
* *
1454794 GGCACCCTTTAGTCCTCAAAGAGCAAGACACCTTTTTCATTTCAAAGCCTACACGAGTTGCTGGC
65 GGCACCCTTTAGTCCTCAAAAAGCAAGACACCTTTTTCATTTCAAAGCCCACACGAGTTGCTGGC
1454859 ACCCTTTAGTC
130 ACCCTTTAGTC
1454870 ATTGAAGAGT
Statistics
Matches: 126, Mismatches: 12, Indels: 3
0.89 0.09 0.02
Matches are distributed among these distances:
164 76 0.60
165 48 0.38
166 2 0.02
ACGTcount: A:0.24, C:0.29, G:0.19, T:0.27
Consensus pattern (165 bp):
GTGGCACCCTTTAGCCCTCAAAGAGAAGGACACCTTTTTCCTTTCAAAGCCCACACGAGTTGGTG
GCACCCTTTAGTCCTCAAAAAGCAAGACACCTTTTTCATTTCAAAGCCCACACGAGTTGCTGGCA
CCCTTTAGTCCTCAAAGAGCAGCATGCCTTTTTAA
Found at i:1454886 original size:62 final size:62
Alignment explanation
Indices: 1454731--1455117 Score: 499
Period size: 62 Copynumber: 6.3 Consensus size: 62
1454721 GCCTTTTTAA
* *
1454731 GTGGCACCCTTTAGCCCTCAAAGAGCAAGACACCTTTTTCCTTTCGAAGCCCACAC-AGTTG
1 GTGGCACCCTTTAGTCCTCAAAGAGCAAGACACCTTTTTCCTTTCAAAGCCCACACGAGTTG
* *
1454792 GTGGCACCCTTTAGTCCTCAAAGAGCAAGACACCTTTTTCATTTCAAAGCCTACACGAGTTG
1 GTGGCACCCTTTAGTCCTCAAAGAGCAAGACACCTTTTTCCTTTCAAAGCCCACACGAGTTG
* * ** * *
1454854 CTGGCACCCTTTAGTCATTGAAGAGTAGGACACCTTTTTCCTTTCAAAGCCCACACGAGTTG
1 GTGGCACCCTTTAGTCCTCAAAGAGCAAGACACCTTTTTCCTTTCAAAGCCCACACGAGTTG
* * * *
1454916 GTGGCACCCTTTAGTCCTCAAAGAGC-AGGCTGCCTTTTTCTTTTCAAAGCCCACACAAGTTG
1 GTGGCACCCTTTAGTCCTCAAAGAGCAAGAC-ACCTTTTTCCTTTCAAAGCCCACACGAGTTG
* * * ** * *
1454978 GTGGCACCCTTTAGTCCTCAAAAATCAGGATGCCTTTTTCCTTTCAAAGCCCACACAAGTTT
1 GTGGCACCCTTTAGTCCTCAAAGAGCAAGACACCTTTTTCCTTTCAAAGCCCACACGAGTTG
* ** ** *
1455040 GTGGCACCCTTTAGTCCTTAAAGAGCAAGATGCCTTTTTCCTTTCAGCGCCCACACGTGTTG
1 GTGGCACCCTTTAGTCCTCAAAGAGCAAGACACCTTTTTCCTTTCAAAGCCCACACGAGTTG
*
1455102 GTGGCACCCTTCAGTC
1 GTGGCACCCTTTAGTC
1455118 TCCTTTCAAA
Statistics
Matches: 284, Mismatches: 39, Indels: 5
0.87 0.12 0.02
Matches are distributed among these distances:
61 54 0.19
62 229 0.81
63 1 0.00
ACGTcount: A:0.24, C:0.29, G:0.19, T:0.28
Consensus pattern (62 bp):
GTGGCACCCTTTAGTCCTCAAAGAGCAAGACACCTTTTTCCTTTCAAAGCCCACACGAGTTG
Found at i:1454904 original size:226 final size:227
Alignment explanation
Indices: 1454509--1454954 Score: 673
Period size: 226 Copynumber: 2.0 Consensus size: 227
1454499 TGTTGTTGGT
* ** *
1454509 ACCCTTTAGTCCTCAAAGAGCAAGACGTATTTTTCCTTTCAAAGCCCATAGAAGTTGGTGGCACC
1 ACCCTTTAGCCCTCAAAGAGCAAGACACATTTTTCCTTTCAAAGCCCACAGAAGTTGGTGGCACC
** * * *
1454574 CTTTAGTCCTCAAAGAGAAGGATGCCTTTTTCCTTTCAAAGCCCGCACGAGTTGGTGGCACCCTT
66 CTTTAGTCCTCAAAGAGAAGGACACCTTTTTCATTTCAAAGCCCACACGAGTTGCTGGCACCCTT
* **
1454639 TAGTCCTCAAAAAGCAGGATGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAG
131 TAGTCATCAAAAAGCAGGACACCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAG
1454704 TCCTCAAAGAGCA-GCATGCCTTTTTAAGTGGC
196 TCCTCAAAGAGCAGGC-TGCCTTTTTAAGTGGC
* * *
1454736 ACCCTTTAGCCCTCAAAGAGCAAGACACCTTTTTCCTTTCGAAGCCCACA-CAGTTGGTGGCACC
1 ACCCTTTAGCCCTCAAAGAGCAAGACACATTTTTCCTTTCAAAGCCCACAGAAGTTGGTGGCACC
*
1454800 CTTTAGTCCTCAAAGAGCAA-GACACCTTTTTCATTTCAAAGCCTACACGAGTTGCTGGCACCCT
66 CTTTAGTCCTCAAAGAG-AAGGACACCTTTTTCATTTCAAAGCCCACACGAGTTGCTGGCACCCT
** * *
1454864 TTAGTCATTGAAGAGTAGGACACCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTA
130 TTAGTCATCAAAAAGCAGGACACCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTA
1454929 GTCCTCAAAGAGCAGGCTGCCTTTTT
195 GTCCTCAAAGAGCAGGCTGCCTTTTT
1454955 CTTTTCAAAG
Statistics
Matches: 197, Mismatches: 20, Indels: 5
0.89 0.09 0.02
Matches are distributed among these distances:
226 149 0.76
227 48 0.24
ACGTcount: A:0.25, C:0.28, G:0.19, T:0.28
Consensus pattern (227 bp):
ACCCTTTAGCCCTCAAAGAGCAAGACACATTTTTCCTTTCAAAGCCCACAGAAGTTGGTGGCACC
CTTTAGTCCTCAAAGAGAAGGACACCTTTTTCATTTCAAAGCCCACACGAGTTGCTGGCACCCTT
TAGTCATCAAAAAGCAGGACACCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAG
TCCTCAAAGAGCAGGCTGCCTTTTTAAGTGGC
Found at i:1455133 original size:40 final size:40
Alignment explanation
Indices: 1455078--1455157 Score: 115
Period size: 40 Copynumber: 2.0 Consensus size: 40
1455068 GATGCCTTTT
** **
1455078 TCCTTTCAGCGCCCACACGTGTTGGTGGCACCCTTCAGTC
1 TCCTTTCAAAGCCCACACAAGTTGGTGGCACCCTTCAGTC
*
1455118 TCCTTTCAAAGCCCACACAAGTTGGTGGCACCCTTTAGTC
1 TCCTTTCAAAGCCCACACAAGTTGGTGGCACCCTTCAGTC
1455158 CTCAAAGAGC
Statistics
Matches: 35, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
40 35 1.00
ACGTcount: A:0.17, C:0.35, G:0.20, T:0.28
Consensus pattern (40 bp):
TCCTTTCAAAGCCCACACAAGTTGGTGGCACCCTTCAGTC
Found at i:1455194 original size:102 final size:102
Alignment explanation
Indices: 1455016--1455211 Score: 322
Period size: 102 Copynumber: 1.9 Consensus size: 102
1455006 GATGCCTTTT
* *
1455016 TCCTTTCAAAGCCCACACAAGTTTGTGGCACCCTTTAGTCCTTAAAGAGCAAGATGCCTTTTTCC
1 TCCTTTCAAAGCCCACACAAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAAGATGCCTTTTTCC
* * *
1455081 TTTCAGCGCCCACACGTGTTGGTGGCACCCTTCAGTC
66 TTTCAGAGCCCACACGAGTTCGTGGCACCCTTCAGTC
*
1455118 TCCTTTCAAAGCCCACACAAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTTTCC
1 TCCTTTCAAAGCCCACACAAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAAGATGCCTTTTTCC
1455183 TTTCTA-AGCCCACACGAGTTCGTGGCACC
66 TTTC-AGAGCCCACACGAGTTCGTGGCACC
1455212 ATTTAGTCCT
Statistics
Matches: 87, Mismatches: 6, Indels: 2
0.92 0.06 0.02
Matches are distributed among these distances:
102 86 0.99
103 1 0.01
ACGTcount: A:0.21, C:0.32, G:0.19, T:0.28
Consensus pattern (102 bp):
TCCTTTCAAAGCCCACACAAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAAGATGCCTTTTTCC
TTTCAGAGCCCACACGAGTTCGTGGCACCCTTCAGTC
Found at i:1455217 original size:62 final size:62
Alignment explanation
Indices: 1455118--1455551 Score: 512
Period size: 62 Copynumber: 7.0 Consensus size: 62
1455108 CCCTTCAGTC
*
1455118 TCCTTTCAAAGCCCACACAAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTT
1 TCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTT
* * * * * * *
1455180 TCCTTTCTAAGCCCACACGAGTTCGTGGCACCATTTAGTCCTTAAAAAGCAAGATTCCTTTT
1 TCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTT
* * * * * * **
1455242 TCATTTCAAAACCCACACGAGATGGTGG-TCCATTTTGTCCTCAAAGAGCAGGACACCTTTT
1 TCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTT
* * * * * * * * **
1455303 TCTTTTCAAAGCCCATACGTGTAGTTGGTACCCTTTAGTCCTCAAAGAGCAAGACGTATTTT
1 TCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTT
* * * * *
1455365 TCTTTTCAAAGCCCACA-GAAGTTGATGGGACCCTTTAGTCCTCAAATAACAGGATGCCTTTT
1 TCCTTTCAAAGCCCACACG-AGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTT
* * * * *
1455427 TCCTTTCGAAGCCCGCACGAGTTGGTGGCACCCTTCAATCCTCAAAAAGCAGGATGCCTTTT
1 TCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTT
*
1455489 TCCTTTCAAAGCCCACACGAGTTAGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTT
1 TCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTT
1455551 T
1 T
1455552 GAGTGGCACC
Statistics
Matches: 309, Mismatches: 60, Indels: 6
0.82 0.16 0.02
Matches are distributed among these distances:
61 48 0.16
62 260 0.84
63 1 0.00
ACGTcount: A:0.25, C:0.27, G:0.18, T:0.29
Consensus pattern (62 bp):
TCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTT
Found at i:1455259 original size:164 final size:164
Alignment explanation
Indices: 1454957--1455269 Score: 500
Period size: 164 Copynumber: 1.9 Consensus size: 164
1454947 GCCTTTTTCT
*
1454957 TTTCAAAGCCCACACAAGTTGGTGGCACCCTTTAGTCCTCAAAAATCAGGATGCCTTTTTCCTTT
1 TTTCAAAGCCCACACAAGTTGGTGGCACCCTTTAGTCCTCAAAAAGCAGGATGCCTTTTTCCTTT
* * * * *
1455022 CAAAGCCCACACAAGTTTGTGGCACCCTTTAGTCCTTAAAGAGCAAGATGCCTTTTTCCTTTCAG
66 CAAAGCCCACACAAGTTCGTGGCACCATTTAGTCCTTAAAAAGCAAGATGCCTTTTTCATTTCAA
** * *
1455087 CGCCCACACGTGTTGGTGGCACCCTTCAGTCTCC
131 AACCCACACGAGATGGTGGCACCCTTCAGTCTCC
*
1455121 TTTCAAAGCCCACACAAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTTTCCTTT
1 TTTCAAAGCCCACACAAGTTGGTGGCACCCTTTAGTCCTCAAAAAGCAGGATGCCTTTTTCCTTT
* * *
1455186 CTAAGCCCACACGAGTTCGTGGCACCATTTAGTCCTTAAAAAGCAAGATTCCTTTTTCATTTCAA
66 CAAAGCCCACACAAGTTCGTGGCACCATTTAGTCCTTAAAAAGCAAGATGCCTTTTTCATTTCAA
1455251 AACCCACACGAGATGGTGG
131 AACCCACACGAGATGGTGG
1455270 TCCATTTTGT
Statistics
Matches: 135, Mismatches: 14, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
164 135 1.00
ACGTcount: A:0.25, C:0.29, G:0.18, T:0.29
Consensus pattern (164 bp):
TTTCAAAGCCCACACAAGTTGGTGGCACCCTTTAGTCCTCAAAAAGCAGGATGCCTTTTTCCTTT
CAAAGCCCACACAAGTTCGTGGCACCATTTAGTCCTTAAAAAGCAAGATGCCTTTTTCATTTCAA
AACCCACACGAGATGGTGGCACCCTTCAGTCTCC
Found at i:1455549 original size:823 final size:821
Alignment explanation
Indices: 1454295--1465654 Score: 5484
Period size: 823 Copynumber: 13.5 Consensus size: 821
1454285 GACACCTTTT
* * *
1454295 TCCTTTCAAAGCTCACACAAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTATTTCA
1 TCCTTTCAAAGCCCACACAAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTTTCC
* * * *
1454360 TTTCAAAGCCCACACGAGTTCGTGGCACCCTTTAGTCCTTGAAAACCAGGATGCCTTTTTCGTTT
66 TTTCAAAGCCCACACGAGTTCGTGGCACCCTTTAGTCCTTAAAAAGCAAGATGCCTTTTTCATTT
* * *
1454425 -AAAATCCCACATGGGTTGGTGGTCCATTTTGTCCTCAAACAGCAGGACACCTTTTTCTTTTCAA
131 CAAAA-CCCACACGAGTTGGTGGTCCATTTTGTCCTCAAAGAGCAGGACACCTTTTTCTTTTCAA
*
1454489 AGCCCACACGTGTTGTTGGTACCCTTTAGTCCTCAAAGAGCAAGACGTATTTTTCCTTTCAAAGC
195 AGCCCACACGTGTAGTTGGTACCCTTTAGTCCTCAAAGAGCAAGACGTATTTTTCCTTTCAAAGC
1454554 CCATAGAAGTTGGTGGCACCCTTTAGTCCTCAAAGAGA-AGGATGCCTTTTTCCTTTCAAAGCCC
260 CCATAGAAGTTGGTGGCACCCTTTAGTCCTCAAAGA-ACAGGATGCCTTTTTCCTTTCAAAGCCC
1454618 GCACGAGTTGGTGGCACCCTTTAGTCCTCAAAAAGCAGGATGCCTTTTTCCTTTCAAAGCCCACA
324 GCACGAGTTGGTGGCACCCTTTAGTCCTCAAAAAGCAGGATGCCTTTTTCCTTTCAAAGCCCACA
*** *
1454683 CGAGTTGGTGGCACCCTTTAG-TCC-TCAAAGAGCAGCATGCCTTTTTAAGTGGCACCCTTTAGC
389 CGAGTTGGTGGCACCCTTTAGCTCCTTCAAAGAGCAGCA--CCAAGTT-AGTGGCACCCTTTAGT
** * *
1454746 CCTCAAAGAGCAAGACACCTTTTTCCTTTCGAAGCCCACAC-AGTTGGTGGCACCCTTTAGTCCT
451 CCTCAAAGAGCAAGATGCCTTTTTCCTTTCAAAGCCCACACGAGTTCGTGGCACCCTTTAGTCCT
* * * * * **
1454810 CAAAGAGCAAGACACCTTTTTCATTTCAAAGCCTACACGAGTTGCTGGCACCCTTTAGTCATTGA
516 CAAAAAGCAAGACACCTTTTTCATTTCAAAACCCACACGAGTTGCTGG-ACCATTTAGTCCTCAA
*
1454875 AGAGTAGGACACCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGTCCTCAAAGA
580 AGAGCAGGACACCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGTCCTCAAAGA
* * *
1454940 GCAGGCTGCCTTTTTCTTTTCAAAGCCCACACAAGTTGGTGGCACCCTTTAGTCCTCAAAAATCA
645 GCAGGC-GCATTTTTCTTTTCAAAGCCCACACAAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCA
* * * *
1455005 GGATGCCTTTTTCCTTTCAAAGCCCACACAAGTTTGTGGCACCCTTTAGTCCTTAAAGAGCAAGA
709 GGATGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGTCCTCAAAAAGCAAGA
** *
1455070 TGCCTTTTTCCTTTCAGCGCCCACACGTGTTGGTGGCACCCTTCAGTC
774 TGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTCAGTC
1455118 TCCTTTCAAAGCCCACACAAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTTTCC
1 TCCTTTCAAAGCCCACACAAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTTTCC
* * *
1455183 TTTCTAAGCCCACACGAGTTCGTGGCACCATTTAGTCCTTAAAAAGCAAGATTCCTTTTTCATTT
66 TTTCAAAGCCCACACGAGTTCGTGGCACCCTTTAGTCCTTAAAAAGCAAGATGCCTTTTTCATTT
*
1455248 CAAAACCCACACGAGATGGTGGTCCATTTTGTCCTCAAAGAGCAGGACACCTTTTTCTTTTCAAA
131 CAAAACCCACACGAGTTGGTGGTCCATTTTGTCCTCAAAGAGCAGGACACCTTTTTCTTTTCAAA
* *
1455313 GCCCATACGTGTAGTTGGTACCCTTTAGTCCTCAAAGAGCAAGACGTATTTTTCTTTTCAAAGCC
196 GCCCACACGTGTAGTTGGTACCCTTTAGTCCTCAAAGAGCAAGACGTATTTTTCCTTTCAAAGCC
* * * * *
1455378 CACAGAAGTTGATGGGACCCTTTAGTCCTCAAATAACAGGATGCCTTTTTCCTTTCGAAGCCCGC
261 CATAGAAGTTGGTGGCACCCTTTAGTCCTCAAAGAACAGGATGCCTTTTTCCTTTCAAAGCCCGC
* *
1455443 ACGAGTTGGTGGCACCCTTCAATCCTCAAAAAGCAGGATGCCTTTTTCCTTTCAAAGCCCACACG
326 ACGAGTTGGTGGCACCCTTTAGTCCTCAAAAAGCAGGATGCCTTTTTCCTTTCAAAGCCCACACG
* * ***
1455508 AGTTAGTGGCACCCTTTAG-TCC-TCAAAGAGCAGGATGCCTTTTTGAGTGGCACCCTTTAGTCC
391 AGTTGGTGGCACCCTTTAGCTCCTTCAAAGAGCAGCA--CCAAGTT-AGTGGCACCCTTTAGTCC
** * * *
1455571 GGAAAGAGCAAGATGCCTTTTTCCTTTCAAAGCCCACTC-AGTTGGTGGCACCCTTTAATCCTCA
453 TCAAAGAGCAAGATGCCTTTTTCCTTTCAAAGCCCACACGAGTTCGTGGCACCCTTTAGTCCTCA
* * * * *
1455635 AAGAGCAAGACACCTTTTTCCTTTCAAAGCCTACACGAGTTGCTGGCACTC-TTTAGTCCTCGAA
518 AAAAGCAAGACACCTTTTTCATTTCAAAACCCACACGAGTTGCTGG-AC-CATTTAGTCCTCAAA
** *
1455699 GAGCAGGATGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCTTTTAGTCCTCAAAGAG
581 GAGCAGGACACCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGTCCTCAAAGAG
* * * *
1455764 TAGGACGCCTTTTTCTTTTCAAAGCTCATACAAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAG
646 CAGG-CGCATTTTTCTTTTCAAAGCCCACACAAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAG
* * *
1455829 GACGCCTTTTTCCTTTCAAAGCCCACACGAGTTTGTGGCACCCTTTAGTCCTCAAAGAGCAAGAT
710 GATGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGTCCTCAAAAAGCAAGAT
* * * *
1455894 GCCTTTTTCCTTTCAACGCCCACTCGAGTTGATGGCACCCTTTAGTC
775 GCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTCAGTC
*
1455941 TCCTTTCAAAACCCACACAAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTTTCC
1 TCCTTTCAAAGCCCACACAAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTTTCC
* * *
1456006 TTTCTAAGCCCACACGAGTTCGTGGCACCATTTAGTCCTTAAAAAGCAAGATTCCTTTTTCATTT
66 TTTCAAAGCCCACACGAGTTCGTGGCACCCTTTAGTCCTTAAAAAGCAAGATGCCTTTTTCATTT
*
1456071 CAAAACCCACACGAGATGGTGGTCCATTTTGTCCTCAAAGAGCAGGACACCTTTTTCTTTTCAAA
131 CAAAACCCACACGAGTTGGTGGTCCATTTTGTCCTCAAAGAGCAGGACACCTTTTTCTTTTCAAA
* *
1456136 GCCCATACGTGTAGTTGGTACCCTTTAGTCCTCAAAGAGCAAGAAGTATTTTTCCTTTCAAAGCC
196 GCCCACACGTGTAGTTGGTACCCTTTAGTCCTCAAAGAGCAAGACGTATTTTTCCTTTCAAAGCC
*
1456201 CATAGAAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTTTCCTTTCAAAGCCCGC
261 CATAGAAGTTGGTGGCACCCTTTAGTCCTCAAAGAACAGGATGCCTTTTTCCTTTCAAAGCCCGC
*
1456266 ACGAGTTGGTGGCACCCCTTAGTCCTCAAAAAGCAGGATGCCTTTTTCCTTTCAAAGCCCACACG
326 ACGAGTTGGTGGCACCCTTTAGTCCTCAAAAAGCAGGATGCCTTTTTCCTTTCAAAGCCCACACG
* * ** *
1456331 AGTTGGTGGCACCATTCAGTCTCCTTTCAAAGCCCA-CA-CAAGTTGGTGGCACCCTTTAGTCCT
391 AGTTGGTGGCACCCTTTAG-CTCC-TTCAAAGAGCAGCACCAAGTTAGTGGCACCCTTTAGTCCT
* * * * *
1456394 CAAAGAGCAGGATGCCTTTTTCATTTCAAAGCTCACACGAGTTCATGGCACCCTTTAGTCCTTAA
454 CAAAGAGCAAGATGCCTTTTTCCTTTCAAAGCCCACACGAGTTCGTGGCACCCTTTAGTCCTCAA
* ** * * * * * *
1456459 AAAGCAGGATGCCTTTTTCGTTTAAAAACCCACATTG-GTTGGTGGTCCATTTTGTCCTCAAAGA
519 AAAGCAAGACACCTTTTTCATTTCAAAACCCACA-CGAGTTGCTGGACCATTTAGTCCTCAAAGA
* * * * *
1456523 GCAGGAC-TCTTTTTCTTTTCAAAACCCGCAC-ATGTTGTTGGCACCCTTTAGTCCTCAAAGAGC
583 GCAGGACACCTTTTTCCTTTCAAAGCCCACACGA-GTTGGTGGCACCCTTTAGTCCTCAAAGAGC
* * * * * *
1456586 AAGACGTATTTTTCTTTTCAAAGCCCACAGAAGTTGATGGGACCCTTTAGTCCTCAAATAGCAGG
647 -AGGCGCATTTTTCTTTTCAAAGCCCACACAAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGG
* * * * *
1456651 ATGCCTTTTTCCTTTCGAAGCCCGCACGAGTTGGTGGCACCCTTCAATCCTCAAAAAGCAGGATG
711 ATGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGTCCTCAAAAAGCAAGATG
* *
1456716 CCTTTTTCCTTTCAAAGCCCACACGAGTTAGTGGCACCCTTTAG--
776 CCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTCAGTC
** * *** ** *
1456760 TCC--TCAAAGAGCAGGATGCCTTTTTGAGTGGCACCCTTTAGTCCGGAAAGAGCAAGATGCCTT
1 TCCTTTCAAAGCCCA-CA---CAAGTTG-GTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTT
* * * * **
1456823 TTTCCTTTCAAAGCCCACAC-AGTTGGTGGCACCCTTTAATCCTCAAAGAGCAAGACACCTTTTT
61 TTTCCTTTCAAAGCCCACACGAGTTCGTGGCACCCTTTAGTCCTTAAAAAGCAAGATGCCTTTTT
* * * * * **
1456887 CCTTTCAAAGCCTACACGAGTTGCTGG--CACTCTTTAGTCCTCGAAGAGCAGGATGCCTTTTTC
126 CATTTCAAAACCCACACGAGTTGGTGGTCCA-T-TTT-GTCCTCAAAGAGCAGGACACCTTTTTC
* * * * * * * * ** *
1456950 CTTTCAAAGCCCACACGAGTTGGTGGCACCTTTTAGTCCTCAAAGAGTAGGACGCCTTTTTCTTT
188 TTTTCAAAGCCCACACGTGTAGTTGGTACCCTTTAGTCCTCAAAGAGCAAGACGTATTTTTCCTT
* * * * *
1457015 TCAAAGCTCATACAAGTTGGTGGCACCCTTTAGTCCTCATAGAGCAGGACGCCTTTTTCCTTTCA
253 TCAAAGCCCATAGAAGTTGGTGGCACCCTTTAGTCCTCAAAGAACAGGATGCCTTTTTCCTTTCA
* * * * *
1457080 AAGCCCACACGAGTTTGTGGCACCCTTTAGTCCTCAAAGAGCAAGATGCCTTTTTCCTTTCAACG
318 AAGCCCGCACGAGTTGGTGGCACCCTTTAGTCCTCAAAAAGCAGGATGCCTTTTTCCTTTCAAAG
* * * *
1457145 CCCACATGAGTTGATGGCACCCTTTAGTCTCCTTTCAAA-A-C-CCACACAAGTTGGTGGCACCC
383 CCCACACGAGTTGGTGGCACCCTTTAG-CTCC-TTCAAAGAGCAGCAC-CAAGTTAGTGGCACCC
* * *
1457207 TTTAGTCCTCAAAGAGCAGGATGCCTTTTTCCTTTCTAAGCCCACACGAGTTCGTGGCACCATTT
445 TTTAGTCCTCAAAGAGCAAGATGCCTTTTTCCTTTCAAAGCCCACACGAGTTCGTGGCACCCTTT
* * ** * * *
1457272 AGTCCTTAAAAAGCAGGATTCCTTTTTCATTTCAAAACCCACACGAGTTGGTGGTCCATTTTGTC
510 AGTCCTCAAAAAGCAAGACACCTTTTTCATTTCAAAACCCACACGAGTTGCTGGACCATTTAGTC
* * * * * * *
1457337 CTCAAAGAGCAAGACACCTTTTTCTTTTCAAAGCCCATACGTGTAGTTGGTACCCTTTAGTCCTC
575 CTCAAAGAGCAGGACACCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGTCCTC
** * * * *
1457402 AAAGAGCAAGAAGTATTTTTCCTTTCAAAGCCCATAGAAGTTGGTGGCACCCTTTAGTCCTCAAA
640 AAAGAGC-AGGCGCATTTTTCTTTTCAAAGCCCACACAAGTTGGTGGCACCCTTTAGTCCTCAAA
*
1457467 GAGCAGGATGCCTTTTTCCTTTCAAAGCCCGCACGAGTTGGTGGCACCCTTTAGTCCTCAAAAAG
704 GAGCAGGATGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGTCCTCAAAAAG
* * *
1457532 CAGGATGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGAACCTTTTAGTCCTCAAAGAGTAG
769 CAAGATGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACC-------CTTC----AGT--
1457597 GACGCC
821 -----C
* * * *
1457603 TTTTTCTTTTCAAAGCTCATACAAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGACGCCTTT
1 ----TCCTTTCAAAGCCCACACAAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTT
*
1457668 TTCCTTTCAAAGCCCACACGAGTTTGTGGCACCCTTTAGTCCTTAAAAAGCAAGATGCCTTTTTC
62 TTCCTTTCAAAGCCCACACGAGTTCGTGGCACCCTTTAGTCCTTAAAAAGCAAGATGCCTTTTTC
* ** ** * *
1457733 CTTTCAACGCCCACACGAGTTGGTGG--CA------CC-C----TTCA-G-------TCTCCTTT
127 ATTTCAAAACCCACACGAGTTGGTGGTCCATTTTGTCCTCAAAGAGCAGGACACCTTTTTCTTTT
** * * * * ** ** * **
1457777 CAAAGCCCACACAAGTTGGTGGCACCCTTTATTTTTCAAAGAGCCGGATGCCTTTTTCCTTTCAA
192 CAAAGCCCACACGTGTAGTTGGTACCCTTTAGTCCTCAAAGAGCAAGACGTATTTTTCCTTTCAA
* * * * *
1457842 AGCCCACACG-AGTTGGTGACACCTTTTAGTCCTCAAA-AAGTAGGATGCCTTTTTCGTTTCAAA
257 AGCCCATA-GAAGTTGGTGGCACCCTTTAGTCCTCAAAGAA-CAGGATGCCTTTTTCCTTTCAAA
** * * * * * * * * *
1457905 -CCTACACGGGTTAGTAGC-CTCATTTTGTCCTCAAAGAGTAGGACT-CCCTTTTCTTTTCAAAG
320 GCCCGCACGAGTTGGTGGCAC-CCTTTAGTCCTCAAAAAGCAGGA-TGCCTTTTTCCTTTCAAAG
** *
1457967 CCCACACTTGTTGGCGGCACCCTTTAG-TCC-TCAATGAGTAGGACCCCTTTTTCTTTTCAACGC
383 CCCACACGAGTTGGTGGCACCCTTTAGCTCCTTCAA--AG-A-G---------------C-A-GC
* * * * *
1458030 -CTACATAGGTTTGTGGCACCATTTAGTTCTGAAAGAGCAGGATGCCTTTTTCCTTTCAAAGCCC
427 AC--CA-A-GTTAGTGGCACCCTTTAGTCCTCAAAGAGCAAGATGCCTTTTTCCTTTCAAAGCCC
* * * * * * * **
1458094 ACATGAGTTTGTGGCACCCTTTAGCCCACAAAGAGCAAGACGCCTTTTTCCTTTCAACGCCCACA
488 ACACGAGTTCGTGGCACCCTTTAGTCCTCAAAAAGCAAGACACCTTTTTCATTTCAAAACCCACA
* ** * *
1458159 CGAGTTGGTGG--C----A--CC-C----TTCA-G-------TCTCCTTTCAAAGCCCACACAAG
553 CGAGTTGCTGGACCATTTAGTCCTCAAAGAGCAGGACACCTTTTTCCTTTCAAAGCCCACACGAG
* * * * * * * *
1458203 TTGGTGGCACCTTTTAGTCTTCAAAGAGCAGGATGCCTTTCTCCTTTCAAAGCCAACACGAGTTG
618 TTGGTGGCACCCTTTAGTCCTCAAAGAGCAGG-CGCATTTTTCTTTTCAAAGCCCACACAAGTTG
* * * * * * * * *
1458268 GTGACATCTTTTAGTCCTCAAAAAGCAGGTTGCCTTTTTCGTTTCAGA-CCTACACGGGTTGGTG
682 GTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTG
* ** * * * * * * ** *
1458332 GC-CTCATTTTTTCCTCAAAGAGTAGGACT-CCTTTTTCTTTTTAAAGCCTACACTTGTTGGCGG
747 GCAC-CCTTTAGTCCTCAAAAAGCAAGA-TGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGG
*
1458395 CACCCTTTAGTCCTC
810 CACCCTTCAG---TC
* * * * * *
1458410 AATGAGCAGGACCCCTTTTTCTTTTCAAAGCCTACTCGAGTTTGTGGCACCCTTTAGTTCTGAAA
1 --T-----------C-----C-TTTCAAAGCCCACACAAGTTGGTGGCACCCTTTAGTCCTCAAA
* * * *
1458475 GAGGAGGATGCCTTTTTCCTTTCAAAGCCCACACGAGTTTGTGGCACCCTTTAGTCCTCAAAGAG
47 GAGCAGGATGCCTTTTTCCTTTCAAAGCCCACACGAGTTCGTGGCACCCTTTAGTCCTTAAAAAG
* * * ** * **
1458540 CATGATGCCCTTTTCCTTTCAATGCCCACACGTGTTGGTGG--CA-------C-C--A-TTCA-G
112 CAAGATGCCTTTTTCATTTCAAAACCCACACGAGTTGGTGGTCCATTTTGTCCTCAAAGAGCAGG
* * ** * * * * *
1458591 -------TCTCATTTCAAAGCCCACACAAGTTGGTGGCACCCTTTTGTCCTCAAAGAGCAGGA--
177 ACACCTTTTTCTTTTCAAAGCCCACACGTGTAGTTGGTACCCTTTAGTCCTCAAAGAGCAAGACG
* * ** * * *
1458647 TACCTTTTT-CATTCAAAGCCCACACG-AGTTCATGGCACCCTTTAGACCTTAAA-AAGCAAGAT
242 TA--TTTTTCCTTTCAAAGCCCATA-GAAGTTGGTGGCACCCTTTAGTCCTCAAAGAA-CAGGAT
* * * * * * * * * *
1458709 GCCTTTTTCGTTTAAAAACCCACATGGGTTGGTGG-TCCATTTTGTCCTCAAAGAGCAGGA-GAC
303 GCCTTTTTCCTTTCAAAGCCCGCACGAGTTGGTGGCACCCTTTAGTCCTCAAAAAGCAGGATG-C
* *
1458772 CTTTTTCTTTTCAAAGCCCACAC-ATGTTGTTGGCACCCTTTAG-TCC-TCAAAGAGCAAGACGT
367 CTTTTTCCTTTCAAAGCCCACACGA-GTTGGTGGCACCCTTTAGCTCCTTCAAAGAGC---A-G-
* *
1458834 ATTTTTCTTTTCAAAGCCCACAGAAGTT-GATGGCACCCTTGAGTCCTCAAAGAGC-AGTGTGCC
426 -----------C--A---C-C--AAGTTAG-TGGCACCCTTTAGTCCTCAAAGAGCAAG-ATGCC
* * * * * **
1458897 TTTTTCCTTTTAAAGCCCGCACGAGTTGGTGGCACCCTTCAGTCCTCAAAAAGCAGGATGCCTTT
470 TTTTTCCTTTCAAAGCCCACACGAGTTCGTGGCACCCTTTAGTCCTCAAAAAGCAAGACACCTTT
* * * * * **
1458962 TTCCTTTTAAAGCCCACACGAGTTAG-TGGCACCCTTTAGTCCTCAAAGAGTAGGATGCC---TT
535 TTCATTTCAAAACCCACACGAGTT-GCTGG-ACCATTTAGTCCTCAAAGAGCAGGACACCTTTTT
** * * *
1459023 --TTT------------GA----GTGGCACCCTTTAGTCCGAAAAGAGCAAGACGCCTTTTTCCT
598 CCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGTCCTCAAAGAGC-AGGCGCATTTTTCTT
** * * * * **
1459070 TTCAAAGAGCACAC-AGTTGTTGGCAGCCTTTAATCCTCAAAGAGCAAGACACCTTTTTCCTTTC
662 TTCAAAGCCCACACAAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTTTCCTTTC
* * * * *
1459134 AAAGCCTACACGAGTTGCTGGCACCCTTTAGTCCTCGAAGAGCAGGATGCCTTTTTCCTTTCAAA
727 AAAGCCCACACGAGTTGGTGGCACCCTTTAGTCCTCAAAAAGCAAGATGCCTTTTTCCTTTCAAA
* *
1459199 GCCTACACGAGTTGGTGGCACCTTTTAGTCCTCAAAGAGCAGGATGCC
792 GCCCACACGAGTTGGTGGCA-C-------CCT------TCA-G-T--C
* * * * *
1459247 TTTTTCTTTTCAAAGCTCATACAAGTTGGTGGCACCCTTTAGTCCTCATAGAGCAGGACGCCTTT
1 ----TCCTTTCAAAGCCCACACAAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTT
* * *
1459312 TTCCTTTCAAAGCCCACACGAGTTTGTGCCACCCTTTAGTCCTTAAAGAGCAAGATGCCTTTTTC
62 TTCCTTTCAAAGCCCACACGAGTTCGTGGCACCCTTTAGTCCTTAAAAAGCAAGATGCCTTTTTC
* ** ** *
1459377 CTTTCAATGCCCACACGAGTTGGTGG--CA------CC-C----TTCA-G------TCTTC-TTT
127 ATTTCAAAACCCACACGAGTTGGTGGTCCATTTTGTCCTCAAAGAGCAGGACACCTTTTTCTTTT
** * * * * * * ** * **
1459421 CAAAGCCCACACAAGTTGGTGGCACCCTTTATTTCTCGAAGAGCCGGATGCCTTTTTCCTTTCAA
192 CAAAGCCCACACGTGTAGTTGGTACCCTTTAGTCCTCAAAGAGCAAGACGTATTTTTCCTTTCAA
* * * * *
1459486 AGCCCACACG-AGTTGGTGACACCTTTTAGTCCTCAAA-AAGTAGGATGCCTTTTTCGTTTCAAA
257 AGCCCATA-GAAGTTGGTGGCACCCTTTAGTCCTCAAAGAA-CAGGATGCCTTTTTCCTTTCAAA
** * * * * * * * *
1459549 -CCTACACGGGTCGGTAGC-CTCATTTTGTCCTCAAAGAGTAGGACT-CCTTTTTCTTTTCAAAG
320 GCCCGCACGAGTTGGTGGCAC-CCTTTAGTCCTCAAAAAGCAGGA-TGCCTTTTTCCTTTCAAAG
** *
1459611 CCCACACTTGTTGGCGGCACCCTTTAG-TCC-TCAATGAGTAGGGCCCCTTTTTCTTTTCAACGC
383 CCCACACGAGTTGGTGGCACCCTTTAGCTCCTTCAA--AG-A--G--------------C-A-GC
* * * * *
1459674 -CTACATAGGTTTGTGGCACCATTTAGTTCTGAAAGAGCAGGATGCCTTTTTCCTTTCAAAGCCC
427 AC--CA-A-GTTAGTGGCACCCTTTAGTCCTCAAAGAGCAAGATGCCTTTTTCCTTTCAAAGCCC
* * ** * **
1459738 ACACGAGTTTGTGGCACCCTTTAGTCCTCAAAGAGCAAGATGCCTTTTTCCTTTCAACGCCCACA
488 ACACGAGTTCGTGGCACCCTTTAGTCCTCAAAAAGCAAGACACCTTTTTCATTTCAAAACCCACA
* ** * *
1459803 CGAGTTGGTGG--C----A--CC-C----TTCA-G-------TCTCCTTTCAAAGCCCACACAAG
553 CGAGTTGCTGGACCATTTAGTCCTCAAAGAGCAGGACACCTTTTTCCTTTCAAAGCCCACACGAG
** * * *
1459847 TTGGTGGCACCCTTTAGTCCTCAAAGAGCAAGATGCCTTTTTCCTTTCAAAGCCCACACGAGTTG
618 TTGGTGGCACCCTTTAGTCCTCAAAGAGC-AGGCGCATTTTTCTTTTCAAAGCCCACACAAGTTG
* * * * * * *
1459912 GTGACACCTTTTAGTTCTCAAAAAGCAGGATGCCTTTTTCGTTTCAAA-CCTACACGGGTTGGTG
682 GTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTG
* * * * * * * * ** *
1459976 GC-CTCATTTTGTCCTCAAAGAGTAGGATTCCTTTTTCTTTTCAATGCCCACACTTGTTGGCAGC
747 GCAC-CCTTTAGTCCTCAAAAAGCAAGATGCCTTTTTCCTTTCAAAGCCCACACGAGTTGG-TG-
* *
1460040 ACCCTTTACTCCTCAATGAGCAGGACCCCTTTT
809 --GC---AC-CCT---T---CA-G-------TC
* * * *
1460073 TCTTTTCAAAGCCTACACGAGTTGGTGGCACCCTTCAGTCCTCAAAGAGCAGGATGCCTTTTTCC
1 TCCTTTCAAAGCCCACACAAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTTTCC
* * * * * *
1460138 TTTCAAAGCCCGCACGAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTTTCCTTT
66 TTTCAAAGCCCACACGAGTTCGTGGCACCCTTTAGTCCTTAAAAAGCAAGATGCCTTTTTCATTT
* * * ** * * * * * * *
1460203 CAAAGCCCACACGGGTCGGTGGCTCCCGTTAGCCCTTAAAAAGAAAGG-CACCTTTTTCCTCTCA
131 CAAAACCCACACGAGTTGGTGG-TCCATTTTGTCCTCAAAGAG-CAGGACACCTTTTTCTTTTCA
* * * * *** *
1460267 AAGCCCACA--TG-AGTTGGCCGCACCCTTTAGCCCTCAAAGAGTAGGACACCTTTTTCTTTTCA
194 AAGCCCACACGTGTAGTT-G--GTACCCTTTAGTCCTCAAAGAGCAAGACGTATTTTTCCTTTCA
* * * * ** *
1460329 AAGTCGACACG-TGTTGGTGGCTTCTTTTAGTCCTCAAAGAGA-AGGATG-CTATTTT-CTTTCA
256 AAGCCCATA-GAAGTTGGTGGCACCCTTTAGTCCTCAAAGA-ACAGGATGCCT-TTTTCCTTTCA
* ** ** * * * * * ** *
1460390 ATGCCCAAACGAGTTGGTGGCATTCTTTTGT-CTGGAAAAAGCCGGACG-CTTCTTATTTTTAAA
318 AAGCCCGCACGAGTTGGTGGCACCCTTTAGTCCT-CAAAAAGCAGGATGCCTTTTTCCTTTCAAA
1460453 GCCCACACGAGTTGGTGGCACCCTTTAG-TCC-TCAAAGTATGGGATGCCTTTTTCCATTCAAAG
382 GCCCACACGAGTTGGTGGCACCCTTTAGCTCCTTC-AA--A---GA-G------------C--AG
* * * * * * *
1460516 CCCACACGAGTTGGTGGCACTCTTTACTCCTCAAAGAGCCAGAAGCCTTTTTCTTTTCAAAGCCC
426 --CAC-CAAGTTAGTGGCACCCTTTAGTCCTCAAAGAGCAAGATGCCTTTTTCCTTTCAAAGCCC
* * * * * * * * * **
1460581 ACAC-AGGTTGGTGGTACCCTTTTGTTCTCAAAGAGTATGACACATTTTTCCTTTCAATGCCCAC
488 ACACGA-GTTCGTGGCACCCTTTAGTCCTCAAAAAGCAAGACACCTTTTTCATTTCAAAACCCAC
* * * *
1460645 ACGAGTTGGTGGCACTC-TTTTGTCCTCAAAAAGCAGGACACCTTTTTCCTTTCAAAGCTCACAC
552 ACGAGTTGCTGG-AC-CATTTAGTCCTCAAAGAGCAGGACACCTTTTTCCTTTCAAAGCCCACAC
* * * * * **
1460709 GGGTTGGTGGCACCCTTTAGTCCACAAAGAGCAGGACGCCTTTTTCTTTTCAGAG-CCAGA-TGG
615 GAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGG-CGCATTTTTCTTTTCAAAGCCCACACAAG
* * * * ** * * *
1460772 ATTGATGGCACCCTTTAGTCCACAAAAAGCAGTATGCCTTTTTTGTTTCAAAACACACACGGGTT
679 -TTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTTTCCTTTCAAAGCCCACACGAGTT
* ** * * * ** * ** *
1460837 GGTGGCTCTATTTTGTCCTCAAAGAGCAGGACACCTTTTTTCTTTTTGAAGCCCACATGTA-TTG
743 GGTGGCACCCTTTAGTCCTCAAAAAGCAAGATGCC-TTTTTCCTTTCAAAGCCCACACG-AGTTG
*
1460901 GTGGCACCCTTTAGTCC
806 GTGGCACCCTTCAGT-C
* * * *
1460918 TCAAAGTGTAAGACATATTTTTTCTTTTAAAGCGCACACGAGTTGGTGGCACCCTTTTGTTCTCA
1 TC-----------C------TTTC----AAAGCCCACACAAGTTGGTGGCACCCTTTAGTCCTCA
* * * * * ***
1460983 AAGAGCAGCATGCCTTTTTCCTTTCAAAGCTCGCACGAGTTGGTGGCACCCCTTAGTCCTTAGTG
45 AAGAGCAGGATGCCTTTTTCCTTTCAAAGCCCACACGAGTTCGTGGCACCCTTTAGTCCTTAAAA
** * * * * * ** * * *
1461048 AGCTGGAAGCCTTTTTCCTTTCAAAGCCCACAC-CGTT-ATCGACACCCTTTAGTCCTCAAAAAG
110 AGCAAGATGCCTTTTTCATTTCAAAACCCACACGAGTTGGT-G-GTCCATTTTGTCCTCAAAGAG
* ** * * * * * *
1461111 CAAGATGCCTTTTCCCTTTCAAAGCCCACACAAT-T-GGTGGCACCCTTTAGTCCTTAAAGAGCA
173 CAGGACACCTTTTTCTTTTCAAAGCCCACAC-GTGTAGTTGGTACCCTTTAGTCCTCAAAGAGCA
* * ** * * * * * *
1461174 GGATGCCTTTTTCTTTTCAAAGCCCAGATG-GGTTGGTGGCACCTTTTAGTCCTCAAAGAGCAAG
237 AGACGTATTTTTCCTTTCAAAGCCCATA-GAAGTTGGTGGCACCCTTTAGTCCTCAAAGAACAGG
* * *
1461238 ATGCCTTTTTCCTTTCAAAGCCCACACGACTTGGTGGCACCCTTTAGTCCTTAAAAAGCAGGATG
301 ATGCCTTTTTCCTTTCAAAGCCCGCACGAGTTGGTGGCACCCTTTAGTCCTCAAAAAGCAGGATG
* * * * *
1461303 CCTTTTTCGTTTCAAAACCCACACGGGTTGGTGGCTCCATTTTA--TCC-TCAAAGAGCATGACA
366 CCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACC-CTTTAGCTCCTTCAAAGAGCA-G---
* * * **
1461365 CCTTTTTCTTTTCAAAGCCCACACGTGTTGTTGGCACCCTTTAGTGCTCAAAGAGCAAGACGTAT
426 ------------C--A--CCA-A-GT-TAG-TGGCACCCTTTAGTCCTCAAAGAGCAAGATGCCT
** * * * *** *
1461430 TTTTCCTTTCACAA-CCCACAAAAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGTCATT
471 TTTTCCTTTCA-AAGCCCACACGAGTTCGTGGCACCCTTTAGTCCTCAAAAAGCAAGACACCTTT
* * * * * * * **
1461494 TTCCTTTCAAAGCCCGCACGAGTTGATGGCACCCTTCAGTCCTCAAAAAGCAGGATGCCTTTTTC
535 TTCATTTCAAAACCCACACGAGTTGCTGG-ACCATTTAGTCCTCAAAGAGCAGGACACCTTTTTC
* * * * * **
1461559 CTTTCAAA-CCCAACAGGAATTAGTGGCACCCTTTAGTCCTCAATGATCA-G-G-A--TGCCTTT
599 CTTTCAAAGCCC-ACACGAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGCGCATTTTTCTTT
* *
1461618 TC---G--------AG-TGGT---ACCCTTTAGTCCTCAAAGAGCAAGACGCCTTTTTCCTTTCA
663 TCAAAGCCCACACAAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTTTCCTTTCA
* * ** *
1461668 AAGCCCACAC-AGTTGGTGGCACCGTTGAGTCCTCAAAGAA-CAAGACACCTTTTTCCCTTCAAA
728 AAGCCCACACGAGTTGGTGGCACCCTTTAGTCCTCAAA-AAGCAAGATGCCTTTTTCCTTTCAAA
* * *
1461731 GCCTACACGAGTTGTTGTCACCCTTTAGTCCTCGAAGAGTAGGACAC
792 GCCCACACGAGTTGGTGGCACCC-----T--TC----AGT------C
* * *
1461778 TTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGTCCCCAAAGAGCAGGACGCCTT
1 -----TCCTTTCAAAGCCCACACAAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTT
* ** * * * * *
1461843 TTTCTTTTCAAAGCCCACATAAGTTGGTGGCACCCTTTAGTCCTCAAAGAGTAGGATGCCTTTTT
61 TTTCCTTTCAAAGCCCACACGAGTTCGTGGCACCCTTTAGTCCTTAAAAAGCAAGATGCCTTTTT
* * * * * * * * ** *
1461908 CCTTTCAAAGCCCATACGAGTTTGTGGCACCCTTTAGTCCTCAAAGAGCAAGATGCCTTTTTCCT
126 CATTTCAAAACCCACACGAGTTGGTGG-TCCATTTTGTCCTCAAAGAGCAGGACACCTTTTTCTT
* ** ** *
1461973 TTCAATGCCCACAC--G-AGTTGGT-GGC---A--CC-C----TTC--G--G----TCTCCTTTC
190 TTCAAAGCCCACACGTGTAGTTGGTACCCTTTAGTCCTCAAAGAGCAAGACGTATTTTTCCTTTC
* ** * *
1462016 AAAGCCCACACTAGTTGGTGGCACCCTTCT-GTCCCCAAAGAGCAGGATGCCTTTTTCCTTTCAA
255 AAAGCCCATAGAAGTTGGTGGCACCCTT-TAGTCCTCAAAGAACAGGATGCCTTTTTCCTTTCAA
* * * * * * *
1462080 AGCCCACACAAGTTGGTGGCACCTTTTAGTCCTTAAAGAGCACGACT-ACTTTTTCCTTTCAAAG
319 AGCCCGCACGAGTTGGTGGCACCCTTTAGTCCTCAAAAAGCAGGA-TGCCTTTTTCCTTTCAAAG
1462144 CCCACAC-AGTTGGTGGCACCCTTTAG-T-CTTCAAAGAGCAGGACACCTTTTTCCTTTCAAAAC
383 CCCACACGAGTTGGTGGCACCCTTTAGCTCCTTCAAAGAGCA-G---------------C---A-
* * * *
1462206 CCACATGAGTTGGTGGCACCCTTTAGTCCTTAAAGTGCAGGATGCCTTTTTCCTTTCAAAGCCCA
428 -C-CA--AGTTAGTGGCACCCTTTAGTCCTCAAAGAGCAAGATGCCTTTTTCCTTTCAAAGCCCA
* * * * * * * **
1462271 CACG-GGTAGATGGCTCCCTTTAGCCCTCAAAAAGCCAGACACCTTTTTCTTTTTAAAGGCCACA
489 CACGAGTTCG-TGGCACCCTTTAGTCCTCAAAAAGCAAGACACCTTTTTCATTTCAAAACCCACA
* * * * * * * ** * *
1462335 CGAGTCGGTGG-CTCTCTTTTGTCCTTAAAGTGTAGGATGCCTTTTTTCTTTCAAAGTCCACACG
553 CGAGTTGCTGGAC-C-ATTTAGTCCTCAAAGAGCAGGACACCTTTTTCCTTTCAAAGCCCACACG
* * ** * * **
1462399 AGTTGGAGGCACCCTTTAGTCCTCAAAGAGTGAGATGCCTTTTTCATTTCAAAGCCCACATGAGT
616 AGTTGGTGGCACCCTTTAGTCCTCAAAGAG-CAGGCGCATTTTTCTTTTCAAAGCCCACACAAGT
* * * * * ** * * *
1462464 TGCTGGCACCCTTTAGTCCTCAAAGAGGAGGACGTCTTTTTCCATT-AGAAGGGCAAATGATTTG
680 TGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTTTCCTTTCA-AAGCCCACACGAGTTG
** ** * * *
1462528 GTGGCATTCTTTAGTCCTCAATGAGCAGGATG-CTTTTTTCTTTCAAAGCCCAAACGAGTTGGTG
744 GTGGCACCCTTTAGTCCTCAAAAAGCAAGATGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTG
1462592 GCATTCTTTTGTCC-TCAAAGAGTAGGACACC
809 GCA--C------CCTTC----AGT-------C
** * * *
1462623 TTTTTCCTTTCAAAGCCCACATGAGTTGGTGGCACCCTTTACTCCTCAAAGAGCCGGAAGCCTTT
1 ----TCCTTTCAAAGCCCACACAAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTT
* * * * * ** * * * *
1462688 TTCTTTTCAAACCCCGCACGGGTTGGTCACACCATTTTA-TCCTCAAAGAG-AGTGATGCCTTTT
62 TTCCTTTCAAAGCCCACACGAGTTCGTGGCACC-CTTTAGTCCTTAAAAAGCA-AGATGCCTTTT
* * * * ** * **
1462751 TC-TTTTAAAAGCCCACACGAGTTGGTGGCACCCTCTACTCCTTAAAGAGCAGGATGCCTTTTTC
125 TCATTTCAAAA-CCCACACGAGTTGGTGG-TCCATTTTGTCCTCAAAGAGCAGGACACCTTTTTC
* * * * * *
1462815 CTTTCAAAGCCCACACGTGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAAGACATGTTTTTCCTT
188 TTTTCAAAGCCCACACGTGTAGTTGGTACCCTTTAGTCCTCAAAGAGCAAGACGTATTTTTCCTT
* * * ** * ** ***
1462880 TTAAAGCCCACACG-GGTTGGTGGCACCCTTTTTTCCTTAAAGAGTAGGACATCTTTTTCCTTTC
253 TCAAAGCCCATA-GAAGTTGGTGGCACCCTTTAGTCCTCAAAGAACAGGATGCCTTTTTCCTTTC
* * * ** *
1462944 AATA-CCCACACGAGTTGGTGTCACTCTTTAGTCCTC--AAAGCATAGGACACCTTTTTCCATTC
317 AA-AGCCCGCACGAGTTGGTGGCACCCTTTAGTCCTCAAAAAGC--AGGATGCCTTTTTCCTTTC
* * * * *
1463006 AAAGGCCACAAGGGTTGGTGGCACCTTTTAG-TCC-ACAAAGAGCAGGACGCCTTTTTCTTTTCA
379 AAAGCCCACACGAGTTGGTGGCACCCTTTAGCTCCTTCAAAGAGC---A-G------------C-
* *
1463069 AAGCCCAGATAGGTTGGTGGCACCCTTTAGTCCTTAAAGAGC-AGCATGCCTTTTTCCTTTCAAA
427 -A--CC--A-A-GTTAGTGGCACCCTTTAGTCCTCAAAGAGCAAG-ATGCCTTTTTCCTTTCAAA
* * *
1463133 GCCCACACGAGTTGGTGGCA-CCTTTAGTCCTCAAAAAGCAAGA-TCCTTTTCTCGTTT-AAAAG
484 GCCCACACGAGTTCGTGGCACCCTTTAGTCCTCAAAAAGCAAGACACCTTTT-TCATTTCAAAA-
* * * * * * * * *
1463195 CCTACACGGGTTGGTAGCCTCATTTTGTCCTCAAAGAGTAGGACACTTTTTTCTTTTCAAAGCCC
547 CCCACACGAGTTGCTGGAC-CATTTAGTCCTCAAAGAGCAGGACACCTTTTTCCTTTCAAAGCCC
* * * * ** * ** * * *
1463260 ACACAAGTTTGTGACACTCTTTAGTTTTCAAATAGCAGGATACCTTTTTCCTTTCAAAGCCCACG
611 ACACGAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGG-CGCATTTTTCTTTTCAAAGCCCACA
** * ** * *
1463325 TGAGTTGGTGGCACCCTTCAGTCCTCAAAGAGCAGGACACTTTTTTCCTTTCAAAGCCCACAAGA
675 CAAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTTTCCTTTCAAAGCCCACACGA
* * * * *
1463390 GTTGGTGGCACCCTTTAGTCCTCGAAGAGCAGGATGCCTTTTTCCTTTCAAAGCCCATACAAGTT
740 GTTGGTGGCACCCTTTAGTCCTCAAAAAGCAAGATGCCTTTTTCCTTTCAAAGCCCACACGAGTT
** *
1463455 GGCCGCACCCTTTAGTCC
805 GGTGGCACCCTTCAGT-C
** * *
1463473 TCGAAGAGCAAGACACCTTTTTCTTTTCAAAGCAAACACGAGTTGGTGGCACCCTTTAGTCCTCG
1 T---------------C-----C-TTTCAAAGCCCACACAAGTTGGTGGCACCCTTTAGTCCTCA
* ** * * * ** *
1463538 AAGAGGAGGACACCTTTTTCCCTTCAAAGCCCAAACGAGTT-GATGACATTCTTTTGT-CTTGAA
45 AAGAGCAGGATGCCTTTTTCCTTTCAAAGCCCACACGAGTTCG-TGGCACCCTTTAGTCCTT-AA
* * ** * ** * *
1463601 AGAGCAGGACACTTTTTTC-TTCTCAAAACCCAC-CTGAGTTGGTGACACCCTTTAGTCCTCAAA
108 AAAGCAAGATGCCTTTTTCATT-TCAAAACCCACAC-GAGTTGGTG-GTCCATTTTGTCCTCAAA
*** * * * * * *
1463664 GAGTCA-GATGTCTTTTTCCTTTCAAAACCCACA--TG-GGTTGGCGACCTCATTTTGTCCTTAA
170 GAG-CAGGACACCTTTTTCTTTTCAAAGCCCACACGTGTAGTTGG-TACC-C-TTTAGTCCTCAA
* * **** * * * * *
1463725 AGAGTAGGAAACCTTTTTCTTTTCAAAGCCTACACG-TGTTGGTGGCACCCTTTAGTCCTCAATG
231 AGAGCAAGACGTATTTTTCCTTTCAAAGCCCATA-GAAGTTGGTGGCACCCTTTAGTCCTCAAAG
* * * * ** * * * *
1463789 AGCAAGACGCCTTTTTCCTTTCAAAGTCCATACGAGTTTGTGGCACCCTTTAGTTCTTAAAGAGC
295 AACAGGATGCCTTTTTCCTTTCAAAGCCCGCACGAGTTGGTGGCACCCTTTAGTCCTCAAAAAGC
** * * *
1463854 AGGATGCCTTTTTCCTTTCAAAGCCCACGTGAGTTAGTGGCACCCTTCAG-TCCCTCAAAAAGTG
360 AGGATGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGCTCCTTC--AAA---
* * * *
1463918 GGACGCCTTTTCTTTTCAAAGCCCATACAAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGAC
420 -GA-G-----------C--AG--CA-CCAAGTTAGTGGCACCCTTTAGTCCTCAAAGAGCAAGAT
* * * * * * * * * *
1463983 GCCTTTTCCCTTTCAAATCCCACATG-GGTCGGTGGCTCCCGTTAGCCCTCAAAACGTAGGACAC
467 GCCTTTTTCCTTTCAAAGCCCACACGAGTTC-GTGGCACCCTTTAGTCCTCAAAAAGCAAGACAC
* * * * ** * * * * **
1464047 CTTTTTCCTTTCAAAGCCCACATGAGTTGGTCGCTCCCTTTAGCCCACAAAGAGCATGATGCCTT
531 CTTTTTCATTTCAAAACCCACACGAGTTGCT-GGACCATTTAGTCCTCAAAGAGCAGGACACCTT
* * * * * * * *
1464112 TTTCTTTTCAAAGCCCAGATGGGTTGGTGGCACCCTTTAGTCCTTAAAGAGTAGGATGCCTTTTT
595 TTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGG-CGCATTTTT
* * * * **
1464177 CTTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGTCCTCAAAAAGCAAGCTGCCTTTTTTGT
659 CTTTTCAAAGCCCACACAAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTTTCCT
* * * * * * * * ** *
1464242 TTTAAAACCCACACGGGTTGGCGGC-CTCATTTTGTCCTCAAAAAGTAGGACACCTTTTTTCTTT
724 TTCAAAGCCCACACGAGTTGGTGGCAC-CCTTTAGTCCTCAAAAAGCAAGATGCC-TTTTTCCTT
** * * *
1464306 TCAAAGGTCACACGTGTTGGTGGAACCTTTTAGTCCTCAATGAGCAGGACGCCTTTT
787 TCAAAGCCCACACGAGTTGGTGG---C----A--CC-C--T--TC---A-G----TC
* * ** * **
1464363 TCCTTTTAAAGCCTACAGGAG-TGTGTGACACCCTTTAGTTTTCAAAGAGCAGGATGCCTTTTTC
1 TCCTTTCAAAGCCCACACAAGTTG-GTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTTTC
** * * * * * * ** * *
1464427 CTTTCAAAGCCCATGCGAGTTGGTGGCACCCTTCAGTCCTCAAAGAGTAGGACACTTTTTTCCTT
65 CTTTCAAAGCCCACACGAGTTCGTGGCACCCTTTAGTCCTTAAAAAGCAAGATGCCTTTTTCATT
* * * * * * * *
1464492 TCAAAGCCCACACGAGTTGGTGGCACCCTTTAGTCCTCGAAGAGTAGGACGCCTTTTTCCTTTCA
130 TCAAAACCCACACGAGTTGGTGG-TCCATTTTGTCCTCAAAGAGCAGGACACCTTTTTCTTTTCA
* * *** * *
1464557 AAG-CC-CACGTG-AGTTGGTGACACCTTTAAGTCCTCAAAGAGGAGGACGCCCTTTTCTTTTTA
194 AAGCCCACACGTGTAGTTGGT-AC-CCTTT-AGTCCTCAAAGAGCAAGACGTATTTTTCCTTTCA
* * * * * *
1464619 AAGCCCACACAAGTTGGTGGCACCCTCTAGTCCTCAAAAAACAAGACGCCTTTTTCCTTAT-AAA
256 AAGCCCATAGAAGTTGGTGGCACCCTTTAGTCCTCAAAGAACAGGATGCCTTTTTCCTT-TCAAA
* ** * * * * * * * * **
1464683 TCCCATAGGGGTCGATGGCTCCCGTTAGCCCTCAAAAAGTAGGACACCTTTTTCCTTTCAAAGCC
320 GCCCGCACGAGTTGGTGGCACCCTTTAGTCCTCAAAAAGCAGGATGCCTTTTTCCTTTCAAAGCC
** * *
1464748 CACACGAGTTGGTCACTCCCTTTAG-TCC-ACAAAGAGCATGATGCCTTTTTCTTTTCAAAGCCT
385 CACACGAGTTGGTGGCACCCTTTAGCTCCTTCAAAGAGC---A-G------------C--A-CC-
* * * * ** *
1464811 AGATGGGTTGGTGGCACCCTTTAGTCCTTAAAGAGTAGGATGTTTTTTTCTTTTCAAAGCCCACA
430 A-A---GTTAGTGGCACCCTTTAGTCCTCAAAGAGCAAGATGCCTTTTTCCTTTCAAAGCCCACA
* * ** * ** *
1464876 CTGAGTTGGTGGCACCCTTTAGTCCTCAAAAAGCAGGATGCTTTTTTTGTTTTAAAACCCACACG
491 C-GAGTTCGTGGCACCCTTTAGTCCTCAAAAAGCAAGACACCTTTTTCATTTCAAAACCCACACG
* * * * * * * *
1464941 GGTTAGC-GGCCTCATTTTGTCCTCAAAGAGTAGGACACCTTTTTCTTTTCAAAGGCCAGACGTG
555 AGTT-GCTGGAC-CATTTAGTCCTCAAAGAGCAGGACACCTTTTTCCTTTCAAAGCCCACACGAG
* * * * * * * *
1465005 TTGGTGGCACCTTTTAGTTCTCAATGAGCAGGACTCCTTTTTCCTTTT-AAAGTCTACACGAGTT
618 TTGGTGGCACCCTTTAGTCCTCAAAGAGCAGG-CGCATTTTT-CTTTTCAAAGCCCACACAAGTT
* * ** *
1465069 TGTGTCACCCTTTAGTTTTCAAAGAGTAGGATGCCTTTTTCCTTTCAAAGCCCA-AGCGAGTTGG
681 GGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTTTCCTTTCAAAGCCCACA-CGAGTTGG
* * * ** *
1465133 TGGCACCCTTCAGTCCTCAAAGAGCAGGACACCTTTTTCCTTTCAAAGCCCGCACGAGTTGGTGG
745 TGGCACCCTTTAGTCCTCAAAAAGCAAGATGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGG
1465198 CACCTTTTAGTCTTCGAAGAGCATGATGCC
810 CACC-------CTT-------CA-G-T--C
** * * ** * *
1465228 TTTTCCTTTTGAAGCCCACACGAGTTAGTGGCTTCCTTCAATCCTCAAAGAGCAGGATGCCTTTT
1 ---TCCTTTCAAAGCCCACACAAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTT
* * * * * * * *
1465293 TCCTTTCACATCCCACAC-AGTTAGTGGCACCCTTTAGTCCTCAAAGAGCAAGATGCCATTTCCC
63 TCCTTTCAAAGCCCACACGAGTTCGTGGCACCCTTTAGTCCTTAAAAAGCAAGATGCCTTTTTCA
* * * * * * * **
1465357 TTTTAAAGCCCACA-TAGTTGGTGGTGGCACCCTTTAGTCCTCTAAGAGCAAGATGCCTTTTTCT
128 TTTCAAAACCCACACGAGTTGGTGGT----CCATTTTGTCCTCAAAGAGCAGGACACCTTTTTCT
* * * * * ** **
1465421 TTTCAGAGCCTAGATAG-GTTAG-TGGCACCCTTTAGTCCTCAAAGAGCAAGTTGCCTTTTTCCT
189 TTTCAAAGCCCACA-CGTG-TAGTTGGTACCCTTTAGTCCTCAAAGAGCAAGACGTATTTTTCCT
* * * * *
1465484 TTCAAAGACCACACG-AGTTGGTGGCACCCTTTAGTCCTTAAA-AAGTAGGATGCCTTTTTCGTT
252 TTCAAAGCCCATA-GAAGTTGGTGGCACCCTTTAGTCCTCAAAGAA-CAGGATGCCTTTTTCCTT
* * * * * * * * * ** *
1465547 TCAAAACCCACACGGGTTGGTGGCTCCATTTTGTCCTTAAAGAGTAGGACACCTTTTTCTTTTCA
315 TCAAAGCCCGCACGAGTTGGTGGCACCCTTTAGTCCTCAAAAAGCAGGATGCCTTTTTCCTTTCA
* *
1465612 AACCCCACAC-ATGTTGGTGGCACCCTTTAG-TCC-TCAAAAAGCA
380 AAGCCCACACGA-GTTGGTGGCACCCTTTAGCTCCTTCAAAGAGCA
1465655 AGACGTATTT
Statistics
Matches: 8442, Mismatches: 1431, Indels: 1285
0.76 0.13 0.12
Matches are distributed among these distances:
802 1 0.00
804 4 0.00
805 1 0.00
806 3 0.00
807 1 0.00
808 1 0.00
809 1 0.00
811 2 0.00
813 1 0.00
814 3 0.00
815 2 0.00
816 3 0.00
817 8 0.00
818 7 0.00
819 8 0.00
820 12 0.00
821 552 0.07
822 1439 0.17
823 2125 0.25
824 143 0.02
825 12 0.00
826 6 0.00
827 8 0.00
828 7 0.00
829 7 0.00
830 10 0.00
831 7 0.00
832 2 0.00
834 2 0.00
835 4 0.00
836 6 0.00
837 5 0.00
838 4 0.00
839 3 0.00
840 6 0.00
841 6 0.00
842 10 0.00
843 192 0.02
844 682 0.08
845 188 0.02
846 51 0.01
847 9 0.00
848 6 0.00
849 12 0.00
850 3 0.00
851 5 0.00
852 6 0.00
853 3 0.00
854 2 0.00
855 4 0.00
856 3 0.00
857 3 0.00
858 5 0.00
859 6 0.00
860 14 0.00
861 3 0.00
862 10 0.00
863 6 0.00
864 146 0.02
865 217 0.03
866 703 0.08
867 549 0.07
868 292 0.03
869 629 0.07
870 232 0.03
871 14 0.00
872 6 0.00
873 2 0.00
874 3 0.00
875 2 0.00
876 1 0.00
878 2 0.00
879 1 0.00
881 1 0.00
884 1 0.00
885 1 0.00
886 2 0.00
887 1 0.00
890 1 0.00
891 1 0.00
ACGTcount: A:0.24, C:0.27, G:0.19, T:0.30
Consensus pattern (821 bp):
TCCTTTCAAAGCCCACACAAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTTTCC
TTTCAAAGCCCACACGAGTTCGTGGCACCCTTTAGTCCTTAAAAAGCAAGATGCCTTTTTCATTT
CAAAACCCACACGAGTTGGTGGTCCATTTTGTCCTCAAAGAGCAGGACACCTTTTTCTTTTCAAA
GCCCACACGTGTAGTTGGTACCCTTTAGTCCTCAAAGAGCAAGACGTATTTTTCCTTTCAAAGCC
CATAGAAGTTGGTGGCACCCTTTAGTCCTCAAAGAACAGGATGCCTTTTTCCTTTCAAAGCCCGC
ACGAGTTGGTGGCACCCTTTAGTCCTCAAAAAGCAGGATGCCTTTTTCCTTTCAAAGCCCACACG
AGTTGGTGGCACCCTTTAGCTCCTTCAAAGAGCAGCACCAAGTTAGTGGCACCCTTTAGTCCTCA
AAGAGCAAGATGCCTTTTTCCTTTCAAAGCCCACACGAGTTCGTGGCACCCTTTAGTCCTCAAAA
AGCAAGACACCTTTTTCATTTCAAAACCCACACGAGTTGCTGGACCATTTAGTCCTCAAAGAGCA
GGACACCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGC
GCATTTTTCTTTTCAAAGCCCACACAAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCC
TTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGTCCTCAAAAAGCAAGATGCCTTT
TTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTCAGTC
Found at i:1455557 original size:41 final size:41
Alignment explanation
Indices: 1455512--1455592 Score: 135
Period size: 41 Copynumber: 2.0 Consensus size: 41
1455502 CACACGAGTT
* *
1455512 AGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTTTG
1 AGTGGCACCCTTTAGTCCGCAAAGAGCAAGATGCCTTTTTG
*
1455553 AGTGGCACCCTTTAGTCCGGAAAGAGCAAGATGCCTTTTT
1 AGTGGCACCCTTTAGTCCGCAAAGAGCAAGATGCCTTTTT
1455593 CCTTTCAAAG
Statistics
Matches: 37, Mismatches: 3, Indels: 0
0.93 0.08 0.00
Matches are distributed among these distances:
41 37 1.00
ACGTcount: A:0.23, C:0.23, G:0.25, T:0.28
Consensus pattern (41 bp):
AGTGGCACCCTTTAGTCCGCAAAGAGCAAGATGCCTTTTTG
Found at i:1455673 original size:164 final size:164
Alignment explanation
Indices: 1455386--1455715 Score: 475
Period size: 164 Copynumber: 2.0 Consensus size: 164
1455376 CCCACAGAAG
* * * * * *
1455386 TTGATGGGACCCTTTAGTCCTCAAATAACAGGATGCCTTTTTCCTTTCGAAGCCCGCACGAGTTG
1 TTGATGGCACCCTTTAGTCCGCAAAGAACAAGATGCCTTTTTCCTTTCAAAGCCCACACGAGTTG
* **
1455451 GTGGCACCCTTCAATCCTCAAAAAGCAGGATGCCTTTTTCCTTTCAAAGCCCACACGAGTTAG-T
66 GTGGCACCCTTCAATCCTCAAAAAGCAAGACACCTTTTTCCTTTCAAAGCCCACACGAGTT-GCT
1455515 GGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTT
130 GGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTT
* * *
1455550 TTGAGTGGCACCCTTTAGTCCGGAAAGAGCAAGATGCCTTTTTCCTTTCAAAGCCCACTC-AGTT
1 TTGA-TGGCACCCTTTAGTCCGCAAAGAACAAGATGCCTTTTTCCTTTCAAAGCCCACACGAGTT
* * *
1455614 GGTGGCACCCTTTAATCCTCAAAGAGCAAGACACCTTTTTCCTTTCAAAGCCTACACGAGTTGCT
65 GGTGGCACCCTTCAATCCTCAAAAAGCAAGACACCTTTTTCCTTTCAAAGCCCACACGAGTTGCT
* *
1455679 GGCACTCTTTAGTCCTCGAAGAGCAGGATGCCTTT
130 GGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTT
1455714 TT
1 TT
1455716 CCTTTCAAAG
Statistics
Matches: 147, Mismatches: 17, Indels: 4
0.88 0.10 0.02
Matches are distributed among these distances:
163 1 0.01
164 100 0.68
165 46 0.31
ACGTcount: A:0.24, C:0.28, G:0.20, T:0.29
Consensus pattern (164 bp):
TTGATGGCACCCTTTAGTCCGCAAAGAACAAGATGCCTTTTTCCTTTCAAAGCCCACACGAGTTG
GTGGCACCCTTCAATCCTCAAAAAGCAAGACACCTTTTTCCTTTCAAAGCCCACACGAGTTGCTG
GCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTT
Found at i:1455713 original size:62 final size:62
Alignment explanation
Indices: 1455554--1455940 Score: 542
Period size: 62 Copynumber: 6.3 Consensus size: 62
1455544 GCCTTTTTGA
** * *
1455554 GTGGCACCCTTTAGTCCGGAAAGAGCAAGATGCCTTTTTCCTTTCAAAGCCCACTC-AGTTG
1 GTGGCACCCTTTAGTCCTCAAAGAGCAAGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTG
* * *
1455615 GTGGCACCCTTTAATCCTCAAAGAGCAAGACACCTTTTTCCTTTCAAAGCCTACACGAGTTG
1 GTGGCACCCTTTAGTCCTCAAAGAGCAAGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTG
* * * * *
1455677 CTGGCACTCTTTAGTCCTCGAAGAGCAGGATGCCTTTTTCCTTTCAAAGCCCACACGAGTTG
1 GTGGCACCCTTTAGTCCTCAAAGAGCAAGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTG
* * * * * * *
1455739 GTGGCACCTTTTAGTCCTCAAAGAGTAGGACGCCTTTTTCTTTTCAAAGCTCATACAAGTTG
1 GTGGCACCCTTTAGTCCTCAAAGAGCAAGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTG
* *
1455801 GTGGCACCCTTTAGTCCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTT
1 GTGGCACCCTTTAGTCCTCAAAGAGCAAGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTG
* * *
1455863 GTGGCACCCTTTAGTCCTCAAAGAGCAAGATGCCTTTTTCCTTTCAACGCCCACTCGAGTTG
1 GTGGCACCCTTTAGTCCTCAAAGAGCAAGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTG
*
1455925 ATGGCACCCTTTAGTC
1 GTGGCACCCTTTAGTC
1455941 TCCTTTCAAA
Statistics
Matches: 287, Mismatches: 38, Indels: 1
0.88 0.12 0.00
Matches are distributed among these distances:
61 49 0.17
62 238 0.83
ACGTcount: A:0.23, C:0.28, G:0.19, T:0.29
Consensus pattern (62 bp):
GTGGCACCCTTTAGTCCTCAAAGAGCAAGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTG
Found at i:1455727 original size:226 final size:227
Alignment explanation
Indices: 1455332--1455777 Score: 624
Period size: 226 Copynumber: 2.0 Consensus size: 227
1455322 TGTAGTTGGT
* * * *
1455332 ACCCTTTAGTCCTCAAAGAGCAAGACGTATTTTTCTTTTCAAAGCCCACAGAAGTTGATGGGACC
1 ACCCTTTAGTCCGCAAAGAGCAAGACGCATTTTTCCTTTCAAAGCCCACAGAAGTTGATGGCACC
* * * ** * * *
1455397 CTTTAGTCCTCAAATAACAGGATGCCTTTTTCCTTTCGAAGCCCGCACGAGTTGGTGGCACCCTT
66 CTTTAATCCTCAAAGAACAAGACACCTTTTTCCTTTCAAAGCCCACACGAGTTGCTGGCACCCTT
1455462 CAATCCTCAAAAAGCAGGATGCCTTTTTCCTTTCAAAGCCCACACGAGTTAGTGGCACCCTTTAG
131 CAATCCTCAAAAAGCAGGATGCCTTTTTCCTTTCAAAGCCCACACGAGTTAGTGGCACCCTTTAG
*
1455527 TCCTCAAAGAGCAGGATGCCTTTTTGAGTGGC
196 TCCTCAAAGAGCAGGACGCCTTTTTGAGTGGC
* * * ** *
1455559 ACCCTTTAGTCCGGAAAGAGCAAGATGCCTTTTTCCTTTCAAAGCCCAC-TCAGTTGGTGGCACC
1 ACCCTTTAGTCCGCAAAGAGCAAGACGCATTTTTCCTTTCAAAGCCCACAGAAGTTGATGGCACC
* * *
1455623 CTTTAATCCTCAAAGAGCAAGACACCTTTTTCCTTTCAAAGCCTACACGAGTTGCTGGCACTCTT
66 CTTTAATCCTCAAAGAACAAGACACCTTTTTCCTTTCAAAGCCCACACGAGTTGCTGGCACCCTT
* * * * * *
1455688 TAGTCCTCGAAGAGCAGGATGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCTTTTAG
131 CAATCCTCAAAAAGCAGGATGCCTTTTTCCTTTCAAAGCCCACACGAGTTAGTGGCACCCTTTAG
*
1455753 TCCTCAAAGAGTAGGACGCCTTTTT
196 TCCTCAAAGAGCAGGACGCCTTTTT
1455778 CTTTTCAAAG
Statistics
Matches: 190, Mismatches: 29, Indels: 1
0.86 0.13 0.00
Matches are distributed among these distances:
226 147 0.77
227 43 0.23
ACGTcount: A:0.24, C:0.27, G:0.20, T:0.29
Consensus pattern (227 bp):
ACCCTTTAGTCCGCAAAGAGCAAGACGCATTTTTCCTTTCAAAGCCCACAGAAGTTGATGGCACC
CTTTAATCCTCAAAGAACAAGACACCTTTTTCCTTTCAAAGCCCACACGAGTTGCTGGCACCCTT
CAATCCTCAAAAAGCAGGATGCCTTTTTCCTTTCAAAGCCCACACGAGTTAGTGGCACCCTTTAG
TCCTCAAAGAGCAGGACGCCTTTTTGAGTGGC
Found at i:1455947 original size:40 final size:40
Alignment explanation
Indices: 1455901--1455980 Score: 115
Period size: 40 Copynumber: 2.0 Consensus size: 40
1455891 GATGCCTTTT
** * *
1455901 TCCTTTCAACGCCCACTCGAGTTGATGGCACCCTTTAGTC
1 TCCTTTCAAAACCCACACAAGTTGATGGCACCCTTTAGTC
*
1455941 TCCTTTCAAAACCCACACAAGTTGGTGGCACCCTTTAGTC
1 TCCTTTCAAAACCCACACAAGTTGATGGCACCCTTTAGTC
1455981 CTCAAAGAGC
Statistics
Matches: 35, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
40 35 1.00
ACGTcount: A:0.21, C:0.34, G:0.16, T:0.29
Consensus pattern (40 bp):
TCCTTTCAAAACCCACACAAGTTGATGGCACCCTTTAGTC
Found at i:1455947 original size:226 final size:225
Alignment explanation
Indices: 1455715--1456140 Score: 582
Period size: 226 Copynumber: 1.9 Consensus size: 225
1455705 GATGCCTTTT
* * * * *
1455715 TCCTTTCAAAGCCCACACGAGTTGGTGGCACCTTTTAGTCCTCAAAGAGTAGGACGCCTTTTTCT
1 TCCTTTCAAAACCCACACAAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGACGCCTTTTTCC
* * * * * * *
1455780 TTTCAAAGCTCATACAAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGACGCCTTTTTCCTTT
66 TTTCAAAGCCCACACAAGTTCGTGGCACCATTTAGTCCTCAAAAAGCAAGACGCCTTTTTCATTT
* * * * **
1455845 CAAAGCCCACACGAGTTTGTGGCACCCTTTAGTCCTCAAAGAGCAAGATGCCTTTTTCCTTTCAA
131 CAAAACCCACACGAGATGGTGG-ACCATTTAGTCCTCAAAGAGCAAGACACCTTTTTCCTTTCAA
*
1455910 CGCCCACTCGAGTTGATGGCACCCTTTAGTC
195 AGCCCACTCGAGTTGATGGCACCCTTTAGTC
*
1455941 TCCTTTCAAAACCCACACAAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTTTCC
1 TCCTTTCAAAACCCACACAAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGACGCCTTTTTCC
* * * **
1456006 TTTCTAAGCCCACACGAGTTCGTGGCACCATTTAGTCCTTAAAAAGCAAGATTCCTTTTTCATTT
66 TTTCAAAGCCCACACAAGTTCGTGGCACCATTTAGTCCTCAAAAAGCAAGACGCCTTTTTCATTT
* * * *
1456071 CAAAACCCACACGAGATGGTGGTCCATTTTGTCCTCAAAGAGCAGGACACCTTTTTCTTTTCAAA
131 CAAAACCCACACGAGATGGTGGACCATTTAGTCCTCAAAGAGCAAGACACCTTTTTCCTTTCAAA
1456136 GCCCA
196 GCCCA
1456141 TACGTGTAGT
Statistics
Matches: 171, Mismatches: 29, Indels: 1
0.85 0.14 0.00
Matches are distributed among these distances:
225 40 0.23
226 131 0.77
ACGTcount: A:0.24, C:0.28, G:0.18, T:0.30
Consensus pattern (225 bp):
TCCTTTCAAAACCCACACAAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGACGCCTTTTTCC
TTTCAAAGCCCACACAAGTTCGTGGCACCATTTAGTCCTCAAAAAGCAAGACGCCTTTTTCATTT
CAAAACCCACACGAGATGGTGGACCATTTAGTCCTCAAAGAGCAAGACACCTTTTTCCTTTCAAA
GCCCACTCGAGTTGATGGCACCCTTTAGTC
Found at i:1455971 original size:102 final size:102
Alignment explanation
Indices: 1455839--1456042 Score: 322
Period size: 102 Copynumber: 2.0 Consensus size: 102
1455829 GACGCCTTTT
* * *
1455839 TCCTTTCAAAGCCCACACGAGTTTGTGGCACCCTTTAGTCCTCAAAGAGCAAGATGCCTTTTTCC
1 TCCTTTCAAAACCCACACAAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAAGATGCCTTTTTCC
* *
1455904 TTTC-AACGCCCACTCGAGTT-GATGGCACCCTTTAGTC
66 TTTCTAA-GCCCACACGAGTTCG-TGGCACCATTTAGTC
*
1455941 TCCTTTCAAAACCCACACAAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTTTCC
1 TCCTTTCAAAACCCACACAAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAAGATGCCTTTTTCC
1456006 TTTCTAAGCCCACACGAGTTCGTGGCACCATTTAGTC
66 TTTCTAAGCCCACACGAGTTCGTGGCACCATTTAGTC
1456043 CTTAAAAAGC
Statistics
Matches: 94, Mismatches: 6, Indels: 4
0.90 0.06 0.04
Matches are distributed among these distances:
102 91 0.97
103 3 0.03
ACGTcount: A:0.23, C:0.31, G:0.18, T:0.29
Consensus pattern (102 bp):
TCCTTTCAAAACCCACACAAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAAGATGCCTTTTTCC
TTTCTAAGCCCACACGAGTTCGTGGCACCATTTAGTC
Found at i:1456040 original size:62 final size:62
Alignment explanation
Indices: 1455941--1456343 Score: 504
Period size: 62 Copynumber: 6.5 Consensus size: 62
1455931 CCCTTTAGTC
* *
1455941 TCCTTTCAAAACCCACACAAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTT
1 TCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTT
* * * * * * *
1456003 TCCTTTCTAAGCCCACACGAGTTCGTGGCACCATTTAGTCCTTAAAAAGCAAGATTCCTTTT
1 TCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTT
* * * * * * **
1456065 TCATTTCAAAACCCACACGAGATGGTGG-TCCATTTTGTCCTCAAAGAGCAGGACACCTTTT
1 TCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTT
* * * * * * * * **
1456126 TCTTTTCAAAGCCCATACGTGTAGTTGGTACCCTTTAGTCCTCAAAGAGCAAGAAGTATTTT
1 TCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTT
*
1456188 TCCTTTCAAAGCCCATA-GAAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTT
1 TCCTTTCAAAGCCCACACG-AGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTT
* * *
1456250 TCCTTTCAAAGCCCGCACGAGTTGGTGGCACCCCTTAGTCCTCAAAAAGCAGGATGCCTTTT
1 TCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTT
1456312 TCCTTTCAAAGCCCACACGAGTTGGTGGCACC
1 TCCTTTCAAAGCCCACACGAGTTGGTGGCACC
1456344 ATTCAGTCTC
Statistics
Matches: 288, Mismatches: 50, Indels: 6
0.84 0.15 0.02
Matches are distributed among these distances:
61 48 0.17
62 239 0.83
63 1 0.00
ACGTcount: A:0.25, C:0.27, G:0.19, T:0.29
Consensus pattern (62 bp):
TCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTT
Found at i:1456259 original size:185 final size:186
Alignment explanation
Indices: 1455970--1456326 Score: 475
Period size: 185 Copynumber: 1.9 Consensus size: 186
1455960 AGTTGGTGGC
* * * *
1455970 ACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTTTCCTTTCTAAGCCCACACGAGTTCGTGGCACC
1 ACCCTTTAGTCCTCAAAGAGCAAGAAGCATTTTTCCTTTCAAAGCCCACACGAGTTCGTGGCACC
* * * *
1456035 ATTTAGTCCTTAAAAAGCAAGATTCCTTTTTCATTTCAAAACCCACACGAGATGGTGG-TCCATT
66 ATTTAGTCCTCAAAAAGCAAGATGCCTTTTTCATTTCAAAACCCACACGAGATGGTGGCACCACT
* * *
1456099 TTGTCCTCAAAGAGCAGGACACCTTTTTCTTTTCAAAGCCCATACGTGTAGTTGGT
131 TAGTCCTCAAAAAGCAGGACACCTTTTTCCTTTCAAAGCCCATACGTGTAGTTGGT
* * *
1456155 ACCCTTTAGTCCTCAAAGAGCAAGAAGTATTTTTCCTTTCAAAGCCCATA-GAAGTTGGTGGCAC
1 ACCCTTTAGTCCTCAAAGAGCAAGAAGCATTTTTCCTTTCAAAGCCCACACG-AGTTCGTGGCAC
* * * * * * * *
1456219 CCTTTAGTCCTCAAAGAGCAGGATGCCTTTTTCCTTTCAAAGCCCGCACGAGTTGGTGGCACCCC
65 CATTTAGTCCTCAAAAAGCAAGATGCCTTTTTCATTTCAAAACCCACACGAGATGGTGGCACCAC
**
1456284 TTAGTCCTCAAAAAGCAGGATGCCTTTTTCCTTTCAAAGCCCA
130 TTAGTCCTCAAAAAGCAGGACACCTTTTTCCTTTCAAAGCCCA
1456327 CACGAGTTGG
Statistics
Matches: 146, Mismatches: 24, Indels: 3
0.84 0.14 0.02
Matches are distributed among these distances:
184 1 0.01
185 105 0.72
186 40 0.27
ACGTcount: A:0.25, C:0.27, G:0.18, T:0.30
Consensus pattern (186 bp):
ACCCTTTAGTCCTCAAAGAGCAAGAAGCATTTTTCCTTTCAAAGCCCACACGAGTTCGTGGCACC
ATTTAGTCCTCAAAAAGCAAGATGCCTTTTTCATTTCAAAACCCACACGAGATGGTGGCACCACT
TAGTCCTCAAAAAGCAGGACACCTTTTTCCTTTCAAAGCCCATACGTGTAGTTGGT
Found at i:1456431 original size:102 final size:102
Alignment explanation
Indices: 1456250--1456445 Score: 320
Period size: 102 Copynumber: 1.9 Consensus size: 102
1456240 GATGCCTTTT
* * *
1456250 TCCTTTCAAAGCCCGCACGAGTTGGTGGCACCCCTTAGTCCTCAAAAAGCAGGATGCCTTTTTCC
1 TCCTTTCAAAGCCCACACAAGTTGGTGGCACCCCTTAGTCCTCAAAAAGCAGGATGCCTTTTTCA
**
1456315 TTTCAAAGCCCACACGAGTTGGTGGCACCATTCAGTC
66 TTTCAAAGCCCACACGAGTTCATGGCACCATTCAGTC
* *
1456352 TCCTTTCAAAGCCCACACAAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTTTCA
1 TCCTTTCAAAGCCCACACAAGTTGGTGGCACCCCTTAGTCCTCAAAAAGCAGGATGCCTTTTTCA
*
1456417 TTTCAAAGCTCACACGAGTTCATGGCACC
66 TTTCAAAGCCCACACGAGTTCATGGCACC
1456446 CTTTAGTCCT
Statistics
Matches: 86, Mismatches: 8, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
102 86 1.00
ACGTcount: A:0.24, C:0.31, G:0.19, T:0.26
Consensus pattern (102 bp):
TCCTTTCAAAGCCCACACAAGTTGGTGGCACCCCTTAGTCCTCAAAAAGCAGGATGCCTTTTTCA
TTTCAAAGCCCACACGAGTTCATGGCACCATTCAGTC
Found at i:1456452 original size:62 final size:62
Alignment explanation
Indices: 1456352--1456784 Score: 484
Period size: 62 Copynumber: 7.0 Consensus size: 62
1456342 CCATTCAGTC
* *
1456352 TCCTTTCAAAGCCCACACAAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTT
1 TCCTTTCAAAGCCCACACGAGTTGATGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTT
* * * * *
1456414 TCATTTCAAAGCTCACACGAGTTCATGGCACCCTTTAGTCCTTAAAAAGCAGGATGCCTTTT
1 TCCTTTCAAAGCCCACACGAGTTGATGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTT
* * * * * * * *
1456476 TCGTTTAAAAACCCACATTG-GTTGGTGG-TCCATTTTGTCCTCAAAGAGCAGGA--CTCTTTT
1 TCCTTTCAAAGCCCACA-CGAGTTGATGGCACCCTTTAGTCCTCAAAGAGCAGGATGC-CTTTT
* * * * * * **
1456536 TCTTTTCAAAACCCGCAC-ATGTTGTTGGCACCCTTTAGTCCTCAAAGAGCAAGACGTATTTT
1 TCCTTTCAAAGCCCACACGA-GTTGATGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTT
* * *
1456598 TCTTTTCAAAGCCCACA-GAAGTTGATGGGACCCTTTAGTCCTCAAATAGCAGGATGCCTTTT
1 TCCTTTCAAAGCCCACACG-AGTTGATGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTT
* * * * * *
1456660 TCCTTTCGAAGCCCGCACGAGTTGGTGGCACCCTTCAATCCTCAAAAAGCAGGATGCCTTTT
1 TCCTTTCAAAGCCCACACGAGTTGATGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTT
1456722 TCCTTTCAAAGCCCACACGAGTT-AGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTT
1 TCCTTTCAAAGCCCACACGAGTTGA-TGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTT
1456784 T
1 T
1456785 GAGTGGCACC
Statistics
Matches: 307, Mismatches: 53, Indels: 22
0.80 0.14 0.06
Matches are distributed among these distances:
59 1 0.00
60 26 0.08
61 41 0.13
62 236 0.77
63 3 0.01
ACGTcount: A:0.25, C:0.27, G:0.19, T:0.30
Consensus pattern (62 bp):
TCCTTTCAAAGCCCACACGAGTTGATGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTT
Found at i:1456503 original size:164 final size:164
Alignment explanation
Indices: 1456188--1456492 Score: 502
Period size: 164 Copynumber: 1.9 Consensus size: 164
1456178 GAAGTATTTT
* * *
1456188 TCCTTTCAAAGCCCATAGAAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTTTCC
1 TCCTTTCAAAGCCCACACAAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTTTCA
* **
1456253 TTTCAAAGCCCGCACGAGTTGGTGGCACCCCTTAGTCCTCAAAAAGCAGGATGCCTTTTTCCTTT
66 TTTCAAAGCCCACACGAGTTCATGGCACCCCTTAGTCCTCAAAAAGCAGGATGCCTTTTTCCTTT
* *
1456318 CAAAGCCCACACGAGTTGGTGGCACCATTCAGTC
131 AAAAACCCACACGAGTTGGTGGCACCATTCAGTC
1456352 TCCTTTCAAAGCCCACACAAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTTTCA
1 TCCTTTCAAAGCCCACACAAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTTTCA
* * * *
1456417 TTTCAAAGCTCACACGAGTTCATGGCACCCTTTAGTCCTTAAAAAGCAGGATGCCTTTTTCGTTT
66 TTTCAAAGCCCACACGAGTTCATGGCACCCCTTAGTCCTCAAAAAGCAGGATGCCTTTTTCCTTT
1456482 AAAAACCCACA
131 AAAAACCCACA
1456493 TTGGTTGGTG
Statistics
Matches: 129, Mismatches: 12, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
164 129 1.00
ACGTcount: A:0.25, C:0.29, G:0.19, T:0.28
Consensus pattern (164 bp):
TCCTTTCAAAGCCCACACAAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTTTCA
TTTCAAAGCCCACACGAGTTCATGGCACCCCTTAGTCCTCAAAAAGCAGGATGCCTTTTTCCTTT
AAAAACCCACACGAGTTGGTGGCACCATTCAGTC
Found at i:1456686 original size:184 final size:183
Alignment explanation
Indices: 1456352--1456772 Score: 499
Period size: 184 Copynumber: 2.3 Consensus size: 183
1456342 CCATTCAGTC
* * *
1456352 TCCTTTCAAAGCCCACACAAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTTTCA
1 TCCTTTCAAAGCCCACAC-AGTT-GTGGCACCCTTTAGTCCTCAAAGAGCAAGACGCATTTTTCA
* * *
1456417 TTTCAAAGCTCACACGAGTTCATGGCACCCTTTAGTCCTTAAAAAGCAGGATGCCTTTTTCGTTT
64 TTTCAAAGCCCACACGAGTTCATGGCACCCTTTAGTCCTCAAAAAGCAGGATGCCTTTTTCCTTT
* * *** *
1456482 AAAAACCCACATTGGTTGGTGG-TCCATTTTGTCCTCAAAGAGCAGGA-CTCTTTT
129 AAAAACCCACATCGGTTGGTGGCACCATTCAATCCTCAAAAAGCAGGATC-CTTTT
* * * * *
1456536 TCTTTTCAAAACCCGCACATGTTGTTGGCACCCTTTAGTCCTCAAAGAGCAAGACGTATTTTTCT
1 TCCTTTCAAAGCCCACACA-GTTG-TGGCACCCTTTAGTCCTCAAAGAGCAAGACGCATTTTTCA
* * *
1456601 TTTCAAAGCCCACA-GAAGTTGATGGGACCCTTTAGTCCTCAAATAGCAGGATGCCTTTTTCCTT
64 TTTCAAAGCCCACACG-AGTTCATGGCACCCTTTAGTCCTCAAAAAGCAGGATGCCTTTTTCCTT
** * * *
1456665 TCGAAGCCCGCA-CGAGTTGGTGGCACCCTTCAATCCTCAAAAAGCAGGATGCCTTTT
128 TAAAAACCCACATCG-GTTGGTGGCACCATTCAATCCTCAAAAAGCAGGAT-CCTTTT
1456722 TCCTTTCAAAGCCCACACGAGTTAGTGGCACCCTTTAGTCCTCAAAGAGCA
1 TCCTTTCAAAGCCCACAC-AGTT-GTGGCACCCTTTAGTCCTCAAAGAGCA
1456773 GGATGCCTTT
Statistics
Matches: 200, Mismatches: 28, Indels: 16
0.82 0.11 0.07
Matches are distributed among these distances:
183 4 0.02
184 125 0.62
185 19 0.09
186 49 0.25
187 3 0.01
ACGTcount: A:0.25, C:0.27, G:0.19, T:0.29
Consensus pattern (183 bp):
TCCTTTCAAAGCCCACACAGTTGTGGCACCCTTTAGTCCTCAAAGAGCAAGACGCATTTTTCATT
TCAAAGCCCACACGAGTTCATGGCACCCTTTAGTCCTCAAAAAGCAGGATGCCTTTTTCCTTTAA
AAACCCACATCGGTTGGTGGCACCATTCAATCCTCAAAAAGCAGGATCCTTTT
Found at i:1456790 original size:41 final size:41
Alignment explanation
Indices: 1456745--1456825 Score: 135
Period size: 41 Copynumber: 2.0 Consensus size: 41
1456735 CACACGAGTT
* *
1456745 AGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTTTG
1 AGTGGCACCCTTTAGTCCGCAAAGAGCAAGATGCCTTTTTG
*
1456786 AGTGGCACCCTTTAGTCCGGAAAGAGCAAGATGCCTTTTT
1 AGTGGCACCCTTTAGTCCGCAAAGAGCAAGATGCCTTTTT
1456826 CCTTTCAAAG
Statistics
Matches: 37, Mismatches: 3, Indels: 0
0.93 0.08 0.00
Matches are distributed among these distances:
41 37 1.00
ACGTcount: A:0.23, C:0.23, G:0.25, T:0.28
Consensus pattern (41 bp):
AGTGGCACCCTTTAGTCCGCAAAGAGCAAGATGCCTTTTTG
Found at i:1456906 original size:164 final size:164
Alignment explanation
Indices: 1456619--1456948 Score: 493
Period size: 164 Copynumber: 2.0 Consensus size: 164
1456609 CCCACAGAAG
* * * * * *
1456619 TTGATGGGACCCTTTAGTCCTCAAATAGCAGGATGCCTTTTTCCTTTCGAAGCCCGCACGAGTTG
1 TTGATGGCACCCTTTAGTCCGCAAAGAGCAAGATGCCTTTTTCCTTTCAAAGCCCACACGAGTTG
* **
1456684 GTGGCACCCTTCAATCCTCAAAAAGCAGGATGCCTTTTTCCTTTCAAAGCCCACACGAGTTAG-T
66 GTGGCACCCTTCAATCCTCAAAAAGCAAGACACCTTTTTCCTTTCAAAGCCCACACGAGTT-GCT
1456748 GGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTT
130 GGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTT
*
1456783 TTGAGTGGCACCCTTTAGTCCGGAAAGAGCAAGATGCCTTTTTCCTTTCAAAGCCCACAC-AGTT
1 TTGA-TGGCACCCTTTAGTCCGCAAAGAGCAAGATGCCTTTTTCCTTTCAAAGCCCACACGAGTT
* * *
1456847 GGTGGCACCCTTTAATCCTCAAAGAGCAAGACACCTTTTTCCTTTCAAAGCCTACACGAGTTGCT
65 GGTGGCACCCTTCAATCCTCAAAAAGCAAGACACCTTTTTCCTTTCAAAGCCCACACGAGTTGCT
* *
1456912 GGCACTCTTTAGTCCTCGAAGAGCAGGATGCCTTT
130 GGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTT
1456947 TT
1 TT
1456949 CCTTTCAAAG
Statistics
Matches: 149, Mismatches: 15, Indels: 4
0.89 0.09 0.02
Matches are distributed among these distances:
163 1 0.01
164 100 0.67
165 48 0.32
ACGTcount: A:0.24, C:0.28, G:0.20, T:0.28
Consensus pattern (164 bp):
TTGATGGCACCCTTTAGTCCGCAAAGAGCAAGATGCCTTTTTCCTTTCAAAGCCCACACGAGTTG
GTGGCACCCTTCAATCCTCAAAAAGCAAGACACCTTTTTCCTTTCAAAGCCCACACGAGTTGCTG
GCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTT
Found at i:1456946 original size:62 final size:62
Alignment explanation
Indices: 1456787--1457173 Score: 542
Period size: 62 Copynumber: 6.3 Consensus size: 62
1456777 GCCTTTTTGA
** *
1456787 GTGGCACCCTTTAGTCCGGAAAGAGCAAGATGCCTTTTTCCTTTCAAAGCCCACAC-AGTTG
1 GTGGCACCCTTTAGTCCTCAAAGAGCAAGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTG
* * *
1456848 GTGGCACCCTTTAATCCTCAAAGAGCAAGACACCTTTTTCCTTTCAAAGCCTACACGAGTTG
1 GTGGCACCCTTTAGTCCTCAAAGAGCAAGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTG
* * * * *
1456910 CTGGCACTCTTTAGTCCTCGAAGAGCAGGATGCCTTTTTCCTTTCAAAGCCCACACGAGTTG
1 GTGGCACCCTTTAGTCCTCAAAGAGCAAGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTG
* * * * * * *
1456972 GTGGCACCTTTTAGTCCTCAAAGAGTAGGACGCCTTTTTCTTTTCAAAGCTCATACAAGTTG
1 GTGGCACCCTTTAGTCCTCAAAGAGCAAGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTG
* * *
1457034 GTGGCACCCTTTAGTCCTCATAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTT
1 GTGGCACCCTTTAGTCCTCAAAGAGCAAGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTG
* * *
1457096 GTGGCACCCTTTAGTCCTCAAAGAGCAAGATGCCTTTTTCCTTTCAACGCCCACATGAGTTG
1 GTGGCACCCTTTAGTCCTCAAAGAGCAAGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTG
*
1457158 ATGGCACCCTTTAGTC
1 GTGGCACCCTTTAGTC
1457174 TCCTTTCAAA
Statistics
Matches: 286, Mismatches: 39, Indels: 1
0.88 0.12 0.00
Matches are distributed among these distances:
61 50 0.17
62 236 0.83
ACGTcount: A:0.23, C:0.28, G:0.19, T:0.29
Consensus pattern (62 bp):
GTGGCACCCTTTAGTCCTCAAAGAGCAAGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTG
Found at i:1456956 original size:226 final size:227
Alignment explanation
Indices: 1456561--1457010 Score: 650
Period size: 226 Copynumber: 2.0 Consensus size: 227
1456551 CACATGTTGT
* * *
1456561 TGGCACCCTTTAGTCCTCAAAGAGCAAGACGTATTTTTCTTTTCAAAGCCCACAGAAGTTGATGG
1 TGGCACCCTTTAGTCCGCAAAGAGCAAGACGCATTTTTCCTTTCAAAGCCCACAGAAGTTGATGG
* * * * ** * * *
1456626 GACCCTTTAGTCCTCAAATAGCAGGATGCCTTTTTCCTTTCGAAGCCCGCACGAGTTGGTGGCAC
66 CACCCTTTAATCCTCAAAGAGCAAGACACCTTTTTCCTTTCAAAGCCCACACGAGTTGCTGGCAC
1456691 CCTTCAATCCTCAAAAAGCAGGATGCCTTTTTCCTTTCAAAGCCCACACGAGTTAGTGGCACCCT
131 CCTTCAATCCTCAAAAAGCAGGATGCCTTTTTCCTTTCAAAGCCCACACGAGTTAGTGGCACCCT
*
1456756 TTAGTCCTCAAAGAGCAGGATGCCTTTTTGAG
196 TTAGTCCTCAAAGAGCAGGACGCCTTTTTGAG
* * * * *
1456788 TGGCACCCTTTAGTCCGGAAAGAGCAAGATGCCTTTTTCCTTTCAAAGCCCACA-CAGTTGGTGG
1 TGGCACCCTTTAGTCCGCAAAGAGCAAGACGCATTTTTCCTTTCAAAGCCCACAGAAGTTGATGG
*
1456852 CACCCTTTAATCCTCAAAGAGCAAGACACCTTTTTCCTTTCAAAGCCTACACGAGTTGCTGGCAC
66 CACCCTTTAATCCTCAAAGAGCAAGACACCTTTTTCCTTTCAAAGCCCACACGAGTTGCTGGCAC
* * * * * * *
1456917 TCTTTAGTCCTCGAAGAGCAGGATGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCTT
131 CCTTCAATCCTCAAAAAGCAGGATGCCTTTTTCCTTTCAAAGCCCACACGAGTTAGTGGCACCCT
*
1456982 TTAGTCCTCAAAGAGTAGGACGCCTTTTT
196 TTAGTCCTCAAAGAGCAGGACGCCTTTTT
1457011 CTTTTCAAAG
Statistics
Matches: 196, Mismatches: 27, Indels: 1
0.88 0.12 0.00
Matches are distributed among these distances:
226 148 0.76
227 48 0.24
ACGTcount: A:0.24, C:0.27, G:0.20, T:0.28
Consensus pattern (227 bp):
TGGCACCCTTTAGTCCGCAAAGAGCAAGACGCATTTTTCCTTTCAAAGCCCACAGAAGTTGATGG
CACCCTTTAATCCTCAAAGAGCAAGACACCTTTTTCCTTTCAAAGCCCACACGAGTTGCTGGCAC
CCTTCAATCCTCAAAAAGCAGGATGCCTTTTTCCTTTCAAAGCCCACACGAGTTAGTGGCACCCT
TTAGTCCTCAAAGAGCAGGACGCCTTTTTGAG
Found at i:1457180 original size:40 final size:40
Alignment explanation
Indices: 1457134--1457213 Score: 115
Period size: 40 Copynumber: 2.0 Consensus size: 40
1457124 GATGCCTTTT
** **
1457134 TCCTTTCAACGCCCACATGAGTTGATGGCACCCTTTAGTC
1 TCCTTTCAAAACCCACACAAGTTGATGGCACCCTTTAGTC
*
1457174 TCCTTTCAAAACCCACACAAGTTGGTGGCACCCTTTAGTC
1 TCCTTTCAAAACCCACACAAGTTGATGGCACCCTTTAGTC
1457214 CTCAAAGAGC
Statistics
Matches: 35, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
40 35 1.00
ACGTcount: A:0.23, C:0.33, G:0.16, T:0.29
Consensus pattern (40 bp):
TCCTTTCAAAACCCACACAAGTTGATGGCACCCTTTAGTC
Found at i:1457180 original size:226 final size:225
Alignment explanation
Indices: 1456948--1457373 Score: 600
Period size: 226 Copynumber: 1.9 Consensus size: 225
1456938 GATGCCTTTT
* * * * *
1456948 TCCTTTCAAAGCCCACACGAGTTGGTGGCACCTTTTAGTCCTCAAAGAGTAGGACGCCTTTTTCT
1 TCCTTTCAAAACCCACACAAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGACGCCTTTTTCC
* * * * * * *
1457013 TTTCAAAGCTCATACAAGTTGGTGGCACCCTTTAGTCCTCATAGAGCAGGACGCCTTTTTCCTTT
66 TTTCAAAGCCCACACAAGTTCGTGGCACCATTTAGTCCTCAAAAAGCAGGACGCCTTTTTCATTT
* * * **
1457078 CAAAGCCCACACGAGTTTGTGGCACCCTTTAGTCCTCAAAGAGCAAGATGCCTTTTTCCTTTCAA
131 CAAAACCCACACGAGTTGGTGG-ACCATTTAGTCCTCAAAGAGCAAGACACCTTTTTCCTTTCAA
*
1457143 CGCCCACATGAGTTGATGGCACCCTTTAGTC
195 AGCCCACATGAGTTGATGGCACCCTTTAGTC
*
1457174 TCCTTTCAAAACCCACACAAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTTTCC
1 TCCTTTCAAAACCCACACAAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGACGCCTTTTTCC
* * * **
1457239 TTTCTAAGCCCACACGAGTTCGTGGCACCATTTAGTCCTTAAAAAGCAGGATTCCTTTTTCATTT
66 TTTCAAAGCCCACACAAGTTCGTGGCACCATTTAGTCCTCAAAAAGCAGGACGCCTTTTTCATTT
* * *
1457304 CAAAACCCACACGAGTTGGTGGTCCATTTTGTCCTCAAAGAGCAAGACACCTTTTTCTTTTCAAA
131 CAAAACCCACACGAGTTGGTGGACCATTTAGTCCTCAAAGAGCAAGACACCTTTTTCCTTTCAAA
1457369 GCCCA
196 GCCCA
1457374 TACGTGTAGT
Statistics
Matches: 173, Mismatches: 27, Indels: 1
0.86 0.13 0.00
Matches are distributed among these distances:
225 41 0.24
226 132 0.76
ACGTcount: A:0.24, C:0.28, G:0.18, T:0.30
Consensus pattern (225 bp):
TCCTTTCAAAACCCACACAAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGACGCCTTTTTCC
TTTCAAAGCCCACACAAGTTCGTGGCACCATTTAGTCCTCAAAAAGCAGGACGCCTTTTTCATTT
CAAAACCCACACGAGTTGGTGGACCATTTAGTCCTCAAAGAGCAAGACACCTTTTTCCTTTCAAA
GCCCACATGAGTTGATGGCACCCTTTAGTC
Found at i:1457204 original size:102 final size:102
Alignment explanation
Indices: 1457072--1457275 Score: 322
Period size: 102 Copynumber: 2.0 Consensus size: 102
1457062 GACGCCTTTT
* * *
1457072 TCCTTTCAAAGCCCACACGAGTTTGTGGCACCCTTTAGTCCTCAAAGAGCAAGATGCCTTTTTCC
1 TCCTTTCAAAACCCACACAAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAAGATGCCTTTTTCC
* *
1457137 TTTC-AACGCCCACATGAGTT-GATGGCACCCTTTAGTC
66 TTTCTAA-GCCCACACGAGTTCG-TGGCACCATTTAGTC
*
1457174 TCCTTTCAAAACCCACACAAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTTTCC
1 TCCTTTCAAAACCCACACAAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAAGATGCCTTTTTCC
1457239 TTTCTAAGCCCACACGAGTTCGTGGCACCATTTAGTC
66 TTTCTAAGCCCACACGAGTTCGTGGCACCATTTAGTC
1457276 CTTAAAAAGC
Statistics
Matches: 94, Mismatches: 6, Indels: 4
0.90 0.06 0.04
Matches are distributed among these distances:
102 91 0.97
103 3 0.03
ACGTcount: A:0.23, C:0.30, G:0.18, T:0.29
Consensus pattern (102 bp):
TCCTTTCAAAACCCACACAAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAAGATGCCTTTTTCC
TTTCTAAGCCCACACGAGTTCGTGGCACCATTTAGTC
Found at i:1457273 original size:62 final size:62
Alignment explanation
Indices: 1457174--1457770 Score: 775
Period size: 62 Copynumber: 9.6 Consensus size: 62
1457164 CCCTTTAGTC
* *
1457174 TCCTTTCAAAACCCACACAAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTT
1 TCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTT
* * * * * *
1457236 TCCTTTCTAAGCCCACACGAGTTCGTGGCACCATTTAGTCCTTAAAAAGCAGGATTCCTTTT
1 TCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTT
* * * * * * **
1457298 TCATTTCAAAACCCACACGAGTTGGTGG-TCCATTTTGTCCTCAAAGAGCAAGACACCTTTT
1 TCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTT
* * * * * * * * **
1457359 TCTTTTCAAAGCCCATACGTGTAGTTGGTACCCTTTAGTCCTCAAAGAGCAAGAAGTATTTT
1 TCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTT
*
1457421 TCCTTTCAAAGCCCATA-GAAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTT
1 TCCTTTCAAAGCCCACACG-AGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTT
* *
1457483 TCCTTTCAAAGCCCGCACGAGTTGGTGGCACCCTTTAGTCCTCAAAAAGCAGGATGCCTTTT
1 TCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTT
* * * *
1457545 TCCTTTCAAAGCCCACACGAGTTGGTGGAACCTTTTAGTCCTCAAAGAGTAGGACGCCTTTT
1 TCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTT
* * * * *
1457607 TCTTTTCAAAGCTCATACAAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGACGCCTTTT
1 TCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTT
* * * *
1457669 TCCTTTCAAAGCCCACACGAGTTTGTGGCACCCTTTAGTCCTTAAAAAGCAAGATGCCTTTT
1 TCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTT
* *
1457731 TCCTTTCAACGCCCACACGAGTTGGTGGCACCCTTCAGTC
1 TCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGTC
1457771 TCCTTTCAAA
Statistics
Matches: 463, Mismatches: 69, Indels: 6
0.86 0.13 0.01
Matches are distributed among these distances:
61 49 0.11
62 413 0.89
63 1 0.00
ACGTcount: A:0.25, C:0.27, G:0.19, T:0.30
Consensus pattern (62 bp):
TCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTT
Found at i:1457298 original size:164 final size:164
Alignment explanation
Indices: 1457026--1457321 Score: 475
Period size: 164 Copynumber: 1.8 Consensus size: 164
1457016 CAAAGCTCAT
*
1457026 ACAAGTTGGTGGCACCCTTTAGTCCTCATAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACG
1 ACAAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACG
* * * * ** *
1457091 AGTTTGTGGCACCCTTTAGTCCTCAAAGAGCAAGATGCCTTTTTCCTTTCAACGCCCACATGAGT
66 AGTTCGTGGCACCATTTAGTCCTCAAAAAGCAAGATGCCTTTTTCATTTCAAAACCCACACGAGT
1457156 TGATGGCACCCTTTAGTCTCCTTTCAAAACCCAC
131 TGATGGCACCCTTTAGTCTCCTTTCAAAACCCAC
* *
1457190 ACAAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTTTCCTTTCTAAGCCCACACG
1 ACAAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACG
* * *
1457255 AGTTCGTGGCACCATTTAGTCCTTAAAAAGCAGGATTCCTTTTTCATTTCAAAACCCACACGAGT
66 AGTTCGTGGCACCATTTAGTCCTCAAAAAGCAAGATGCCTTTTTCATTTCAAAACCCACACGAGT
1457320 TG
131 TG
1457322 GTGGTCCATT
Statistics
Matches: 119, Mismatches: 13, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
164 119 1.00
ACGTcount: A:0.24, C:0.29, G:0.18, T:0.29
Consensus pattern (164 bp):
ACAAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACG
AGTTCGTGGCACCATTTAGTCCTCAAAAAGCAAGATGCCTTTTTCATTTCAAAACCCACACGAGT
TGATGGCACCCTTTAGTCTCCTTTCAAAACCCAC
Found at i:1457847 original size:102 final size:102
Alignment explanation
Indices: 1457669--1457864 Score: 295
Period size: 102 Copynumber: 1.9 Consensus size: 102
1457659 GACGCCTTTT
* *
1457669 TCCTTTCAAAGCCCACACGAGTTTGTGGCACCCTTTAGTCCTTAAAAAGCAAGATGCCTTTTTCC
1 TCCTTTCAAAGCCCACACAAGTTGGTGGCACCCTTTAGTCCTTAAAAAGCAAGATGCCTTTTTCC
* *
1457734 TTTCAACGCCCACACGAGTTGGTGGCACCCTTCAGTC
66 TTTCAAAGCCCACACGAGTTGGTGACACCCTTCAGTC
** * **
1457771 TCCTTTCAAAGCCCACACAAGTTGGTGGCACCCTTTA-TTTTTCAAAGAGCCGGATGCCTTTTTC
1 TCCTTTCAAAGCCCACACAAGTTGGTGGCACCCTTTAGTCCTT-AAAAAGCAAGATGCCTTTTTC
1457835 CTTTCAAAGCCCACACGAGTTGGTGACACC
65 CTTTCAAAGCCCACACGAGTTGGTGACACC
1457865 TTTTAGTCCT
Statistics
Matches: 84, Mismatches: 9, Indels: 2
0.88 0.09 0.02
Matches are distributed among these distances:
101 3 0.04
102 81 0.96
ACGTcount: A:0.23, C:0.31, G:0.18, T:0.29
Consensus pattern (102 bp):
TCCTTTCAAAGCCCACACAAGTTGGTGGCACCCTTTAGTCCTTAAAAAGCAAGATGCCTTTTTCC
TTTCAAAGCCCACACGAGTTGGTGACACCCTTCAGTC
Found at i:1457878 original size:62 final size:62
Alignment explanation
Indices: 1457771--1458181 Score: 389
Period size: 62 Copynumber: 6.6 Consensus size: 62
1457761 CCCTTCAGTC
* * ** *
1457771 TCCTTTCAAAGCCCACACAAGTTGGTGGCACCCTTTATTTTTCAAAGAGCCGGATGCCTTTT
1 TCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTT
* * * *
1457833 TCCTTTCAAAGCCCACACGAGTTGGTGACACCTTTTAGTCCTCAAAAAGTAGGATGCCTTTT
1 TCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTT
* * * * * * * * *
1457895 TCGTTTCAAA-CCTACACGGGTTAGTAGC-CTCATTTTGTCCTCAAAGAGTAGGACT-CCCTTT
1 TCCTTTCAAAGCCCACACGAGTTGGTGGCAC-CCTTTAGTCCTCAAAGAGCAGGA-TGCCTTTT
* ** * * * **
1457956 TCTTTTCAAAGCCCACACTTGTTGGCGGCACCCTTTAGTCCTCAATGAGTAGGACCCCTTTT
1 TCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTT
* * * * * * * *
1458018 TCTTTTCAACGCCTACA-TAGGTTTGTGGCACCATTTAGTTCTGAAAGAGCAGGATGCCTTTT
1 TCCTTTCAAAGCCCACACGA-GTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTT
* * * * * *
1458080 TCCTTTCAAAGCCCACATGAGTTTGTGGCACCCTTTAGCCCACAAAGAGCAAGACGCCTTTT
1 TCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTT
* *
1458142 TCCTTTCAACGCCCACACGAGTTGGTGGCACCCTTCAGTC
1 TCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGTC
1458182 TCCTTTCAAA
Statistics
Matches: 283, Mismatches: 59, Indels: 14
0.79 0.17 0.04
Matches are distributed among these distances:
60 1 0.00
61 48 0.17
62 232 0.82
63 2 0.01
ACGTcount: A:0.23, C:0.28, G:0.18, T:0.31
Consensus pattern (62 bp):
TCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTT
Found at i:1458197 original size:40 final size:40
Alignment explanation
Indices: 1458142--1458222 Score: 126
Period size: 40 Copynumber: 2.0 Consensus size: 40
1458132 GACGCCTTTT
* *
1458142 TCCTTTCAACGCCCACACGAGTTGGTGGCACCCTTCAGTC
1 TCCTTTCAAAGCCCACACAAGTTGGTGGCACCCTTCAGTC
* *
1458182 TCCTTTCAAAGCCCACACAAGTTGGTGGCACCTTTTAGTC
1 TCCTTTCAAAGCCCACACAAGTTGGTGGCACCCTTCAGTC
1458222 T
1 T
1458223 TCAAAGAGCA
Statistics
Matches: 37, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
40 37 1.00
ACGTcount: A:0.20, C:0.33, G:0.19, T:0.28
Consensus pattern (40 bp):
TCCTTTCAAAGCCCACACAAGTTGGTGGCACCCTTCAGTC
Found at i:1458256 original size:62 final size:62
Alignment explanation
Indices: 1458182--1458584 Score: 416
Period size: 62 Copynumber: 6.5 Consensus size: 62
1458172 CCCTTCAGTC
* * * *
1458182 TCCTTTCAAAGCCCACACAAGTTGGTGGCACCTTTTAGTCTTCAAAGAGCAGGATGCCTTTC
1 TCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTT
* * * * * *
1458244 TCCTTTCAAAGCCAACACGAGTTGGTGACATCTTTTAGTCCTCAAAAAGCAGGTTGCCTTTT
1 TCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTT
* * * * * ** *
1458306 TCGTTTCAGA-CCTACACGGGTTGGTGGC-CTCATTTTTTCCTCAAAGAGTAGGACT-CCTTTT
1 TCCTTTCAAAGCCCACACGAGTTGGTGGCAC-CCTTTAGTCCTCAAAGAGCAGGA-TGCCTTTT
* * * ** * * **
1458367 TCTTTTTAAAGCCTACACTTGTTGGCGGCACCCTTTAGTCCTCAATGAGCAGGACCCCTTTT
1 TCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTT
* * * * * * *
1458429 TCTTTTCAAAGCCTACTCGAGTTTGTGGCACCCTTTAGTTCTGAAAGAGGAGGATGCCTTTT
1 TCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTT
* * *
1458491 TCCTTTCAAAGCCCACACGAGTTTGTGGCACCCTTTAGTCCTCAAAGAGCATGATGCCCTTT
1 TCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTT
* *
1458553 TCCTTTCAATGCCCACACGTGTTGGTGGCACC
1 TCCTTTCAAAGCCCACACGAGTTGGTGGCACC
1458585 ATTCAGTCTC
Statistics
Matches: 281, Mismatches: 55, Indels: 10
0.81 0.16 0.03
Matches are distributed among these distances:
61 45 0.16
62 235 0.84
63 1 0.00
ACGTcount: A:0.21, C:0.27, G:0.20, T:0.32
Consensus pattern (62 bp):
TCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTT
Found at i:1458262 original size:102 final size:102
Alignment explanation
Indices: 1458080--1458270 Score: 274
Period size: 102 Copynumber: 1.9 Consensus size: 102
1458070 GATGCCTTTT
** * *
1458080 TCCTTTCAAAGCCCACATGAGTTTGTGGCACCCTTTAGCCCACAAAGAGCAAGACGCCTTTTTCC
1 TCCTTTCAAAGCCCACACAAGTTGGTGGCACCCTTTAGCCCACAAAGAGCAAGACGCCTTTCTCC
* *
1458145 TTTCAACGCCCACACGAGTTGGTGGCACCCTTCAGTC
66 TTTCAAAGCCAACACGAGTTGGTGGCACCCTTCAGTC
* * ** * *
1458182 TCCTTTCAAAGCCCACACAAGTTGGTGGCACCTTTTAGTCTTCAAAGAGCAGGATGCCTTTCTCC
1 TCCTTTCAAAGCCCACACAAGTTGGTGGCACCCTTTAGCCCACAAAGAGCAAGACGCCTTTCTCC
1458247 TTTCAAAGCCAACACGAGTTGGTG
66 TTTCAAAGCCAACACGAGTTGGTG
1458271 ACATCTTTTA
Statistics
Matches: 77, Mismatches: 12, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
102 77 1.00
ACGTcount: A:0.24, C:0.30, G:0.19, T:0.27
Consensus pattern (102 bp):
TCCTTTCAAAGCCCACACAAGTTGGTGGCACCCTTTAGCCCACAAAGAGCAAGACGCCTTTCTCC
TTTCAAAGCCAACACGAGTTGGTGGCACCCTTCAGTC
Found at i:1458666 original size:61 final size:62
Alignment explanation
Indices: 1458596--1459025 Score: 480
Period size: 62 Copynumber: 7.0 Consensus size: 62
1458586 TTCAGTCTCA
* * *
1458596 TTTCAAAGCCCACACAAGTTGGTGGCACCCTTTTGTCCTCAAAGAGCAGGATACCTTTTTC-
1 TTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTTTCT
* ** * * * * *
1458657 ATTCAAAGCCCACACGAGTTCATGGCACCCTTTAGACCTTAAAAAGCAAGATGCCTTTTTCG
1 TTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTTTCT
* * * * * * *
1458719 TTTAAAAACCCACATGGGTTGGTGG-TCCATTTTGTCCTCAAAGAGCAGGA-GACCTTTTTCT
1 TTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATG-CCTTTTTCT
* * * **
1458780 TTTCAAAGCCCACAC-ATGTTGTTGGCACCCTTTAGTCCTCAAAGAGCAAGACGTATTTTTCT
1 TTTCAAAGCCCACACGA-GTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTTTCT
* *
1458842 TTTCAAAGCCCACA-GAAGTTGATGGCACCCTTGAGTCCTCAAAGAGCAGTG-TGCCTTTTTCCT
1 TTTCAAAGCCCACACG-AGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAG-GATGCCTTTTT-CT
* * *
1458905 TTT-AAAGCCCGCACGAGTTGGTGGCACCCTTCAGTCCTCAAAAAGCAGGATGCCTTTTTCCT
1 TTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTTT-CT
* *
1458967 TTT-AAAGCCCACACGAGTTAGTGGCACCCTTTAGTCCTCAAAGAGTAGGATGCCTTTTT
1 TTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTTT
1459026 GAGTGGCACC
Statistics
Matches: 307, Mismatches: 51, Indels: 21
0.81 0.13 0.06
Matches are distributed among these distances:
60 1 0.00
61 97 0.32
62 200 0.65
63 9 0.03
ACGTcount: A:0.25, C:0.26, G:0.19, T:0.30
Consensus pattern (62 bp):
TTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTTTCT
Found at i:1458742 original size:163 final size:164
Alignment explanation
Indices: 1458432--1458743 Score: 410
Period size: 163 Copynumber: 1.9 Consensus size: 164
1458422 CCCTTTTTCT
* * * * * * * * *
1458432 TTTCAAAGCCTACTCGAGTTTGTGGCACCCTTTAGTTCTGAAAGAGGAGGATGCCTTTTTCCTTT
1 TTTCAAAGCCCACACAAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATACCTTTTTCCATT
** * * * *
1458497 CAAAGCCCACACGAGTTTGTGGCACCCTTTAGTCCTCAAAGAGCATGATGCCCTTTTCCTTTCAA
66 CAAAGCCCACACGAGTTCATGGCACCCTTTAGACCTCAAAAAGCAAGATGCCCTTTTCCTTTAAA
** *
1458562 TGCCCACACGTGTTGGTGGCACCATTCAGTCTCA
131 AACCCACACGGGTTGGTGGCACCATTCAGTCTCA
*
1458596 TTTCAAAGCCCACACAAGTTGGTGGCACCCTTTTGTCCTCAAAGAGCAGGATACCTTTTT-CATT
1 TTTCAAAGCCCACACAAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATACCTTTTTCCATT
* * *
1458660 CAAAGCCCACACGAGTTCATGGCACCCTTTAGACCTTAAAAAGCAAGATGCCTTTTTCGTTTAAA
66 CAAAGCCCACACGAGTTCATGGCACCCTTTAGACCTCAAAAAGCAAGATGCCCTTTTCCTTTAAA
*
1458725 AACCCACATGGGTTGGTGG
131 AACCCACACGGGTTGGTGG
1458744 TCCATTTTGT
Statistics
Matches: 125, Mismatches: 23, Indels: 1
0.84 0.15 0.01
Matches are distributed among these distances:
163 74 0.59
164 51 0.41
ACGTcount: A:0.24, C:0.27, G:0.20, T:0.29
Consensus pattern (164 bp):
TTTCAAAGCCCACACAAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATACCTTTTTCCATT
CAAAGCCCACACGAGTTCATGGCACCCTTTAGACCTCAAAAAGCAAGATGCCCTTTTCCTTTAAA
AACCCACACGGGTTGGTGGCACCATTCAGTCTCA
Found at i:1459051 original size:41 final size:41
Alignment explanation
Indices: 1458986--1459066 Score: 117
Period size: 41 Copynumber: 2.0 Consensus size: 41
1458976 CACACGAGTT
** * * *
1458986 AGTGGCACCCTTTAGTCCTCAAAGAGTAGGATGCCTTTTTG
1 AGTGGCACCCTTTAGTCCGAAAAGAGCAAGACGCCTTTTTG
1459027 AGTGGCACCCTTTAGTCCGAAAAGAGCAAGACGCCTTTTT
1 AGTGGCACCCTTTAGTCCGAAAAGAGCAAGACGCCTTTTT
1459067 CCTTTCAAAG
Statistics
Matches: 35, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
41 35 1.00
ACGTcount: A:0.25, C:0.23, G:0.23, T:0.28
Consensus pattern (41 bp):
AGTGGCACCCTTTAGTCCGAAAAGAGCAAGACGCCTTTTTG
Found at i:1459158 original size:164 final size:164
Alignment explanation
Indices: 1458860--1459189 Score: 423
Period size: 164 Copynumber: 2.0 Consensus size: 164
1458850 CCCACAGAAG
** ** * * *
1458860 TTGATGGCACCCTTGAGTCCTCAAAGAGCAGTGTGCCTTTTTCCTTTTAAAGCCCGCACGAGTTG
1 TTGATGGCACCCTTGAGTCCGAAAAGAGCAGTACGCCTTTTTCCTTTCAAAGACCACACGAGTTG
* * ** *
1458925 GTGGCACCCTTCAGTCCTCAAAAAGCAGGATGCCTTTTTCCTTTTAAAGCCCACACGAGTTAGTG
66 GTGGCACCCTTCAATCCTCAAAAAGCAAGACACCTTTTTCCTTTCAAAGCCCACACGAGTTAGTG
*
1458990 GCACCCTTTAGTCCTCAAAGAGTAGGATGCCTTT
131 GCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTT
* *
1459024 TTGAGTGGCACCCTTTAGTCCGAAAAGAGCAAG-ACGCCTTTTTCCTTTCAAAGAGCACAC-AGT
1 TTGA-TGGCACCCTTGAGTCCGAAAAGAGC-AGTACGCCTTTTTCCTTTCAAAGACCACACGAGT
* * * * *
1459087 TGTTGGCAGCCTTTAATCCTCAAAGAGCAAGACACCTTTTTCCTTTCAAAGCCTACACGAGTT-G
64 TGGTGGCACCCTTCAATCCTCAAAAAGCAAGACACCTTTTTCCTTTCAAAGCCCACACGAGTTAG
*
1459151 CTGGCACCCTTTAGTCCTCGAAGAGCAGGATGCCTTT
129 -TGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTT
1459188 TT
1 TT
1459190 CCTTTCAAAG
Statistics
Matches: 142, Mismatches: 21, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
163 1 0.01
164 96 0.68
165 43 0.30
166 2 0.01
ACGTcount: A:0.24, C:0.27, G:0.21, T:0.29
Consensus pattern (164 bp):
TTGATGGCACCCTTGAGTCCGAAAAGAGCAGTACGCCTTTTTCCTTTCAAAGACCACACGAGTTG
GTGGCACCCTTCAATCCTCAAAAAGCAAGACACCTTTTTCCTTTCAAAGCCCACACGAGTTAGTG
GCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTT
Found at i:1459187 original size:62 final size:62
Alignment explanation
Indices: 1459028--1459414 Score: 494
Period size: 62 Copynumber: 6.3 Consensus size: 62
1459018 GCCTTTTTGA
** *
1459028 GTGGCACCCTTTAGTCCGAAAAGAGCAAGACGCCTTTTTCCTTTCAAAGAGC-ACAC-AGTTG
1 GTGGCACCCTTTAGTCCTCAAAGAGCAAGACGCCTTTTTCCTTTCAAAG-CCTACACGAGTTG
* * * *
1459089 TTGGCAGCCTTTAATCCTCAAAGAGCAAGACACCTTTTTCCTTTCAAAGCCTACACGAGTTG
1 GTGGCACCCTTTAGTCCTCAAAGAGCAAGACGCCTTTTTCCTTTCAAAGCCTACACGAGTTG
* * * *
1459151 CTGGCACCCTTTAGTCCTCGAAGAGCAGGATGCCTTTTTCCTTTCAAAGCCTACACGAGTTG
1 GTGGCACCCTTTAGTCCTCAAAGAGCAAGACGCCTTTTTCCTTTCAAAGCCTACACGAGTTG
* * * *
1459213 GTGGCACCTTTTAGTCCTCAAAGAGCAGGATGCCTTTTTCTTTTCAAAGCTCATACA--AGTTG
1 GTGGCACCCTTTAGTCCTCAAAGAGCAAGACGCCTTTTTCCTTTCAAAGC-C-TACACGAGTTG
* * * *
1459275 GTGGCACCCTTTAGTCCTCATAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTT
1 GTGGCACCCTTTAGTCCTCAAAGAGCAAGACGCCTTTTTCCTTTCAAAGCCTACACGAGTTG
* * * * *
1459337 GTGCCACCCTTTAGTCCTTAAAGAGCAAGATGCCTTTTTCCTTTCAATGCCCACACGAGTTG
1 GTGGCACCCTTTAGTCCTCAAAGAGCAAGACGCCTTTTTCCTTTCAAAGCCTACACGAGTTG
*
1459399 GTGGCACCCTTCAGTC
1 GTGGCACCCTTTAGTC
1459415 TTCTTTCAAA
Statistics
Matches: 287, Mismatches: 33, Indels: 11
0.87 0.10 0.03
Matches are distributed among these distances:
60 4 0.01
61 48 0.17
62 230 0.80
63 1 0.00
64 4 0.01
ACGTcount: A:0.24, C:0.28, G:0.19, T:0.29
Consensus pattern (62 bp):
GTGGCACCCTTTAGTCCTCAAAGAGCAAGACGCCTTTTTCCTTTCAAAGCCTACACGAGTTG
Found at i:1459209 original size:226 final size:227
Alignment explanation
Indices: 1458802--1459251 Score: 634
Period size: 226 Copynumber: 2.0 Consensus size: 227
1458792 CACATGTTGT
** * * *
1458802 TGGCACCCTTTAGTCCTCAAAGAGCAAGACGTATTTTTCTTTTCAAAGCCCACAGAAGTTGATGG
1 TGGCACCCTTTAGTCCGAAAAGAGCAAGACGCATTTTTCCTTTCAAAGACCACAGAAGTTGATGG
* *** * * *
1458867 CACCCTTGAGTCCTCAAAGAGCAGTGTGCCTTTTTCCTTTTAAAGCCCGCACGAGTTGGTGGCAC
66 CACCCTTGAATCCTCAAAGAGCAGTACACCTTTTTCCTTTCAAAGCCCACACGAGTTGCTGGCAC
*
1458932 CCTTCAGTCCTCAAAAAGCAGGATGCCTTTTTCCTTTTAAAGCCCACACGAGTTAGTGGCACCCT
131 CCTTCAGTCCTCAAAAAGCAGGATGCCTTTTTCCTTTCAAAGCCCACACGAGTTAGTGGCACCCT
*
1458997 TTAGTCCTCAAAGAGTAGGATGCCTTTTTGAG
196 TTAGTCCTCAAAGAGCAGGATGCCTTTTTGAG
* * * *
1459029 TGGCACCCTTTAGTCCGAAAAGAGCAAGACGCCTTTTTCCTTTCAAAGAGCACA-CAGTTGTTGG
1 TGGCACCCTTTAGTCCGAAAAGAGCAAGACGCATTTTTCCTTTCAAAGACCACAGAAGTTGATGG
* * *
1459093 CAGCCTTTAATCCTCAAAGAGCAAG-ACACCTTTTTCCTTTCAAAGCCTACACGAGTTGCTGGCA
66 CACCCTTGAATCCTCAAAGAGC-AGTACACCTTTTTCCTTTCAAAGCCCACACGAGTTGCTGGCA
* * * * * *
1459157 CCCTTTAGTCCTCGAAGAGCAGGATGCCTTTTTCCTTTCAAAGCCTACACGAGTTGGTGGCACCT
130 CCCTTCAGTCCTCAAAAAGCAGGATGCCTTTTTCCTTTCAAAGCCCACACGAGTTAGTGGCACCC
1459222 TTTAGTCCTCAAAGAGCAGGATGCCTTTTT
195 TTTAGTCCTCAAAGAGCAGGATGCCTTTTT
1459252 CTTTTCAAAG
Statistics
Matches: 195, Mismatches: 27, Indels: 3
0.87 0.12 0.01
Matches are distributed among these distances:
226 146 0.75
227 49 0.25
ACGTcount: A:0.24, C:0.26, G:0.20, T:0.29
Consensus pattern (227 bp):
TGGCACCCTTTAGTCCGAAAAGAGCAAGACGCATTTTTCCTTTCAAAGACCACAGAAGTTGATGG
CACCCTTGAATCCTCAAAGAGCAGTACACCTTTTTCCTTTCAAAGCCCACACGAGTTGCTGGCAC
CCTTCAGTCCTCAAAAAGCAGGATGCCTTTTTCCTTTCAAAGCCCACACGAGTTAGTGGCACCCT
TTAGTCCTCAAAGAGCAGGATGCCTTTTTGAG
Found at i:1459491 original size:102 final size:102
Alignment explanation
Indices: 1459315--1459508 Score: 289
Period size: 102 Copynumber: 1.9 Consensus size: 102
1459305 CGCCTTTTTC
* * *
1459315 CTTTCAAAGCCCACACGAGTTTGTGCCACCCTTTAGTCCTTAAAGAGCAAGATGCCTTTTTCCTT
1 CTTTCAAAGCCCACACAAGTTGGTGCCACCCTTTAGTCCTCAAAGAGCAAGATGCCTTTTTCCTT
* *
1459380 TCAATGCCCACACGAGTTGGTGGCACCCTTCAGTCTT
66 TCAAAGCCCACACGAGTTGGTGACACCCTTCAGTCTT
* * * * **
1459417 CTTTCAAAGCCCACACAAGTTGGTGGCACCCTTTATTTCTCGAAGAGCCGGATGCCTTTTTCCTT
1 CTTTCAAAGCCCACACAAGTTGGTGCCACCCTTTAGTCCTCAAAGAGCAAGATGCCTTTTTCCTT
1459482 TCAAAGCCCACACGAGTTGGTGACACC
66 TCAAAGCCCACACGAGTTGGTGACACC
1459509 TTTTAGTCCT
Statistics
Matches: 81, Mismatches: 11, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
102 81 1.00
ACGTcount: A:0.22, C:0.30, G:0.19, T:0.29
Consensus pattern (102 bp):
CTTTCAAAGCCCACACAAGTTGGTGCCACCCTTTAGTCCTCAAAGAGCAAGATGCCTTTTTCCTT
TCAAAGCCCACACGAGTTGGTGACACCCTTCAGTCTT
Found at i:1459532 original size:62 final size:62
Alignment explanation
Indices: 1459417--1459825 Score: 421
Period size: 62 Copynumber: 6.6 Consensus size: 62
1459407 CTTCAGTCTT
* * * * *
1459417 CTTTCAAAGCCCACACAAGTTGGTGGCACCCTTTATTTCTCGAAGAGCCGGATGCCTTTTTC
1 CTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTTTC
* * * *
1459479 CTTTCAAAGCCCACACGAGTTGGTGACACCTTTTAGTCCTCAAAAAGTAGGATGCCTTTTTC
1 CTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTTTC
* * * * * * * *
1459541 GTTTCAAA-CCTACACGGGTCGGTAGC-CTCATTTTGTCCTCAAAGAGTAGGACT-CCTTTTTC
1 CTTTCAAAGCCCACACGAGTTGGTGGCAC-CCTTTAGTCCTCAAAGAGCAGGA-TGCCTTTTTC
* ** * * * ***
1459602 TTTTCAAAGCCCACACTTGTTGGCGGCACCCTTTAGTCCTCAATGAGTAGGGCCCCTTTTTC
1 CTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTTTC
* * * * * * * *
1459664 TTTTCAACGCCTACA-TAGGTTTGTGGCACCATTTAGTTCTGAAAGAGCAGGATGCCTTTTTC
1 CTTTCAAAGCCCACACGA-GTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTTTC
* *
1459726 CTTTCAAAGCCCACACGAGTTTGTGGCACCCTTTAGTCCTCAAAGAGCAAGATGCCTTTTTC
1 CTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTTTC
* *
1459788 CTTTCAACGCCCACACGAGTTGGTGGCACCCTTCAGTC
1 CTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGTC
1459826 TCCTTTCAAA
Statistics
Matches: 286, Mismatches: 54, Indels: 14
0.81 0.15 0.04
Matches are distributed among these distances:
60 1 0.00
61 49 0.17
62 234 0.82
63 2 0.01
ACGTcount: A:0.22, C:0.28, G:0.19, T:0.31
Consensus pattern (62 bp):
CTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTTTC
Found at i:1459740 original size:124 final size:123
Alignment explanation
Indices: 1459418--1459769 Score: 377
Period size: 123 Copynumber: 2.8 Consensus size: 123
1459408 TTCAGTCTTC
* * * * * *
1459418 TTTCAAAGCCCACACAAGTTGGTGGCACCCTTTATTTCTCG-AAGAGCCGGATGCCTTTTTCCTT
1 TTTCAAA-CCTACACAGGTCGGTGGCACCATTTAGTTCT-GAAAGAGCAGGATGCCTTTTTCCTT
* * **
1459482 TCAAAGCCCACACGAGTTGGTGACACCTTTTAGTCCTCAAAAAGTAGGATGCCTTTTTCG
64 TCAAAGCCCACACGAGTTGGTGGCACCCTTTAGTCCTCAAAAAGTAGGACCCCTTTTTCG
* * * * * * *
1459542 TTTCAAACCTACACGGGTCGGTAGC-CTCATTTTGTCCTCAAAGAGTAGGACT-CCTTTTTCTTT
1 TTTCAAACCTACACAGGTCGGTGGCAC-CATTTAGTTCTGAAAGAGCAGGA-TGCCTTTTTCCTT
** * ** * *
1459605 TCAAAGCCCACACTTGTTGGCGGCACCCTTTAGTCCTCAATGAGTAGGGCCCCTTTTTCT
64 TCAAAGCCCACACGAGTTGGTGGCACCCTTTAGTCCTCAAAAAGTAGGACCCCTTTTTCG
* * **
1459665 TTTCAACGCCTACATAGGTTTGTGGCACCATTTAGTTCTGAAAGAGCAGGATGCCTTTTTCCTTT
1 TTTCAA-ACCTACACAGGTCGGTGGCACCATTTAGTTCTGAAAGAGCAGGATGCCTTTTTCCTTT
*
1459730 CAAAGCCCACACGAGTTTGTGGCACCCTTTAGTCCTCAAA
65 CAAAGCCCACACGAGTTGGTGGCACCCTTTAGTCCTCAAA
1459770 GAGCAAGATG
Statistics
Matches: 182, Mismatches: 40, Indels: 12
0.78 0.17 0.05
Matches are distributed among these distances:
122 1 0.01
123 94 0.52
124 86 0.47
125 1 0.01
ACGTcount: A:0.22, C:0.27, G:0.19, T:0.32
Consensus pattern (123 bp):
TTTCAAACCTACACAGGTCGGTGGCACCATTTAGTTCTGAAAGAGCAGGATGCCTTTTTCCTTTC
AAAGCCCACACGAGTTGGTGGCACCCTTTAGTCCTCAAAAAGTAGGACCCCTTTTTCG
Found at i:1459841 original size:40 final size:40
Alignment explanation
Indices: 1459786--1459865 Score: 133
Period size: 40 Copynumber: 2.0 Consensus size: 40
1459776 GATGCCTTTT
* *
1459786 TCCTTTCAACGCCCACACGAGTTGGTGGCACCCTTCAGTC
1 TCCTTTCAAAGCCCACACAAGTTGGTGGCACCCTTCAGTC
*
1459826 TCCTTTCAAAGCCCACACAAGTTGGTGGCACCCTTTAGTC
1 TCCTTTCAAAGCCCACACAAGTTGGTGGCACCCTTCAGTC
1459866 CTCAAAGAGC
Statistics
Matches: 37, Mismatches: 3, Indels: 0
0.93 0.08 0.00
Matches are distributed among these distances:
40 37 1.00
ACGTcount: A:0.20, C:0.35, G:0.19, T:0.26
Consensus pattern (40 bp):
TCCTTTCAAAGCCCACACAAGTTGGTGGCACCCTTCAGTC
Found at i:1459901 original size:62 final size:62
Alignment explanation
Indices: 1459826--1465738 Score: 4217
Period size: 62 Copynumber: 95.2 Consensus size: 62
1459816 CCCTTCAGTC
* *
1459826 TCCTTTCAAAGCCCACACAAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAAGATGCCTTTT
1 TCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTT
* * * *
1459888 TCCTTTCAAAGCCCACACGAGTTGGTGACACCTTTTAGTTCTCAAAAAGCAGGATGCCTTTT
1 TCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTT
* * * * * * *
1459950 TCGTTTCAAA-CCTACACGGGTTGGTGGC-CTCATTTTGTCCTCAAAGAGTAGGATTCCTTTT
1 TCCTTTCAAAGCCCACACGAGTTGGTGGCAC-CCTTTAGTCCTCAAAGAGCAGGATGCCTTTT
* * ** ** * * **
1460011 TCTTTTCAATGCCCACACTTGTTGGCAGCACCCTTTACTCCTCAATGAGCAGGACCCCTTTT
1 TCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTT
* * *
1460073 TCTTTTCAAAGCCTACACGAGTTGGTGGCACCCTTCAGTCCTCAAAGAGCAGGATGCCTTTT
1 TCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTT
*
1460135 TCCTTTCAAAGCCCGCACGAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTT
1 TCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTT
* * * * * * * *
1460197 TCCTTTCAAAGCCCACACGGGTCGGTGGCTCCCGTTAGCCCTTAAAAAGAAAGGCA--CCTTTT
1 TCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGTCCTCAAAGAG-CAGG-ATGCCTTTT
* * ** * * **
1460259 TCCTCTCAAAGCCCACATGAGTTGGCCGCACCCTTTAGCCCTCAAAGAGTAGGACACCTTTT
1 TCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTT
* * * * ** * *
1460321 TCTTTTCAAAGTCGACACGTGTTGGTGGCTTCTTTTAGTCCTCAAAGAGAAGGATG-CTATTT
1 TCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCT-TTT
* * ** * * * * * *
1460383 T-CTTTCAATGCCCAAACGAGTTGGTGGCATTCTTTTGT-CTGGAAAAAGCCGGACG-CTTCT
1 TCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGTCCT-CAAAGAGCAGGATGCCTTTT
** *
1460443 TATTTTTAAAGCCCACACGAGTTGGTGGCACCCTTTAGTCCTCAAAGTATG--GGATGCCTTTT
1 TCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGTCCTCAAAG-A-GCAGGATGCCTTTT
* * * *
1460505 TCCATTCAAAGCCCACACGAGTTGGTGGCACTCTTTACTCCTCAAAGAGCCA-GAAGCCTTTT
1 TCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGTCCTCAAAGAG-CAGGATGCCTTTT
* * * * * * ** *
1460567 TCTTTTCAAAGCCCACAC-AGGTTGGTGGTACCCTTTTGTTCTCAAAGAGTATGACACATTTT
1 TCCTTTCAAAGCCCACACGA-GTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTT
* * * * **
1460629 TCCTTTCAATGCCCACACGAGTTGGTGGCACTCTTTTGTCCTCAAAAAGCAGGACACCTTTT
1 TCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTT
* * * *
1460691 TCCTTTCAAAGCTCACACGGGTTGGTGGCACCCTTTAGTCCACAAAGAGCAGGACGCCTTTT
1 TCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTT
* * * * * * * *
1460753 TCTTTTCAGAG-CCAGATG-GATTGATGGCACCCTTTAGTCCACAAAAAGCAGTATGCCTTTT
1 TCCTTTCAAAGCCCACACGAG-TTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTT
** * * * * ** * **
1460814 TTGTTTCAAAACACACACGGGTTGGTGGCTCTATTTTGTCCTCAAAGAGCAGGACACCTTTTT
1 TCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCC-TTTT
* ** * * * * ****
1460877 TCTTTTTGAAGCCCACATGTA-TTGGTGGCACCCTTTAGTCCTCAAAGTGTAAGACATATTTT
1 TCCTTTCAAAGCCCACACG-AGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTT
* * * * * *
1460939 TTCTTTTAAAGCGCACACGAGTTGGTGGCACCCTTTTGTTCTCAAAGAGCAGCATGCCTTTT
1 TCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTT
* * * * ** * *
1461001 TCCTTTCAAAGCTCGCACGAGTTGGTGGCACCCCTTAGTCCTTAGTGAGCTGGAAGCCTTTT
1 TCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTT
* * * * *
1461063 TCCTTTCAAAGCCCACAC-CGTT-ATCGACACCCTTTAGTCCTCAAAAAGCAAGATGCCTTTT
1 TCCTTTCAAAGCCCACACGAGTTGGT-GGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTT
* * *
1461124 CCCTTTCAAAGCCCACAC-AATTGGTGGCACCCTTTAGTCCTTAAAGAGCAGGATGCCTTTT
1 TCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTT
* * * * * *
1461185 TCTTTTCAAAGCCCAGATGGGTTGGTGGCACCTTTTAGTCCTCAAAGAGCAAGATGCCTTTT
1 TCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTT
* * *
1461247 TCCTTTCAAAGCCCACACGACTTGGTGGCACCCTTTAGTCCTTAAAAAGCAGGATGCCTTTT
1 TCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTT
* * * * * * **
1461309 TCGTTTCAAAACCCACACGGGTTGGTGGCTCCATTTTA-TCCTCAAAGAGCATGACACCTTTT
1 TCCTTTCAAAGCCCACACGAGTTGGTGGCACC-CTTTAGTCCTCAAAGAGCAGGATGCCTTTT
* * * * * * **
1461371 TCTTTTCAAAGCCCACACGTGTTGTTGGCACCCTTTAGTGCTCAAAGAGCAAGACGTATTTT
1 TCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTT
** * *
1461433 TCCTTTCACAA-CCCACAAAAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGTCATTT
1 TCCTTTCA-AAGCCCACACGAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTT
* * * *
1461495 TCCTTTCAAAGCCCGCACGAGTTGATGGCACCCTTCAGTCCTCAAAAAGCAGGATGCCTTTT
1 TCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTT
* * * * *
1461557 TCCTTTCAAA-CCCAACAGGAATTAGTGGCACCCTTTAGTCCTCAATGATCAGGATGCCTTTTCG
1 TCCTTTCAAAGCCC-ACACGAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCC-TTT--
1461621 AGT
62 --T
* * * * *** * * *
1461624 GGTACCCTTT---AGTCCTCA-AAG-AGCAAG-ACGCCTTT-TTCCTTTCAAAGCCCA-CACAGT
1 --T--CCTTTCAAAGCCCACACGAGTTGGTGGCAC-CCTTTAGTCC--TCAAAG---AGCA-GGA
* ***
1461681 TG-GTGGC
55 TGCCTTTT
* * * * * * ***** * * *
1461688 ACCGTT--GAGTCCTCA-AAGAACAAGACA-CCTTT-TTCCCTTCAAAGCCTA-CACGA-G--TT
1 TCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGT-CC-TCAAAG---AGCAGGATGCCTT
1461744 GTT
61 -TT
* * * * * **
1461747 GTCACCCTTT---AGTCCTCGAAGAG-T--AGG-ACACTTTTTTCCTTTCAAAGCCCA-CACGAG
1 -T---CCTTTCAAAGCCCAC-ACGAGTTGGTGGCACCCTTTAGTCC--TCAAAG---AGCA-G-G
* * ***
1461804 TTG-GTGGCA
54 ATGCCT-TTT
* *** * ** * * * ** ** ** * ***
1461813 CCCTTT-AGTCCCCA-AAGAG-CAG-GACGCCTTTTTCTTTTCAAAGCCCA-CATAAGTTGGTGG
1 TCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTT--T--
*
1461873 CA
62 -T
* * * * ** * **
1461875 CCCTTT---AGTCCTCA-AAGAGTAGGATGCCTTTTTCCTTTCAAAG-CC-CATACGAGTTTGTG
1 TCCTTTCAAAG-CC-CACACGAGTTGG-TGGC---ACCCTTT---AGTCCTCA-AAGAG---CAG
* *
1461934 GCA-CCCTTTAG
53 G-ATGCCTTT-T
** * **** * * **
1461945 TCC--TCAAAGAGCA-A-GA--TGCCT-TTTTCCTTTCAATGCC-CACACGAGTTGG-TGGCACC
1 TCCTTTCAAAGCCCACACGAGTTG-GTGGCACCCTTT-AGT-CCTCA-AAGAGCAGGAT-G---C
*
1462001 CTTCGGTC
58 CTT---TT
* *
1462009 TCCTTTCAAAGCCCACACTAGTTGGTGGCACCCTTCT-GTCCCCAAAGAGCAGGATGCCTTTT
1 TCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTT-TAGTCCTCAAAGAGCAGGATGCCTTTT
* * * * *
1462071 TCCTTTCAAAGCCCACACAAGTTGGTGGCACCTTTTAGTCCTTAAAGAGCACGACT-ACTTTT
1 TCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGA-TGCCTTTT
* **
1462133 TCCTTTCAAAGCCCACAC-AGTTGGTGGCACCCTTTAGTCTTCAAAGAGCAGGACACCTTTT
1 TCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTT
* * * *
1462194 TCCTTTCAAAACCCACATGAGTTGGTGGCACCCTTTAGTCCTTAAAGTGCAGGATGCCTTTT
1 TCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTT
* * * * * * **
1462256 TCCTTTCAAAGCCCACACGGGTAGATGGCTCCCTTTAGCCCTCAAAAAGCCA-GACACCTTTT
1 TCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGTCCTCAAAGAG-CAGGATGCCTTTT
* * * * * * * * * *
1462318 TCTTTTTAAAGGCCACACGAGTCGGTGGCTCTCTTTTGTCCTTAAAGTGTAGGATGCCTTTT
1 TCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTT
* * * *
1462380 TTCTTTCAAAGTCCACACGAGTTGGAGGCACCCTTTAGTCCTCAAAGAG-TGAGATGCCTTTT
1 TCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAG-GATGCCTTTT
* * * * * *
1462442 TCATTTCAAAGCCCACATGAGTTGCTGGCACCCTTTAGTCCTCAAAGAGGAGGACGTCTTTT
1 TCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTT
* ** * * * ** *
1462504 TCCATT-AGAAGGGCAAATGATTTGGTGGCATTCTTTAGTCCTCAATGAGCAGGATG-CTTTT
1 TCCTTTCA-AAGCCCACACGAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTT
* * ** * * **
1462565 TTCTTTCAAAGCCCAAACGAGTTGGTGGCATTCTTTTGTCCTCAAAGAGTAGGACACCTTTT
1 TCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTT
* * * *
1462627 TCCTTTCAAAGCCCACATGAGTTGGTGGCACCCTTTACTCCTCAAAGAGCCGGAAGCCTTTT
1 TCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTT
* * * * ** *
1462689 TCTTTTCAAACCCCGCACGGGTTGGTCACACCATTTTA-TCCTCAAAGAG-AGTGATGCCTTTT
1 TCCTTTCAAAGCCCACACGAGTTGGTGGCACC-CTTTAGTCCTCAAAGAGCAG-GATGCCTTTT
* * * * *
1462751 TCTTTTAAAAGCCCACACGAGTTGGTGGCACCCTCTACTCCTTAAAGAGCAGGATGCCTTTT
1 TCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTT
* *
1462813 TCCTTTCAAAGCCCACACGTGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAAGACATG--TTTT
1 TCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGTCCTCAAAGAGC-AG-GATGCCTTTT
* * ** * * ***
1462875 TCCTTTTAAAGCCCACACGGGTTGGTGGCACCCTTTTTTCCTTAAAGAGTAGGACATCTTTT
1 TCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTT
* * * **
1462937 TCCTTTCAATA-CCCACACGAGTTGGTGTCACTCTTTAGTCCTCAAAGCA-TAGGACACCTTTT
1 TCCTTTCAA-AGCCCACACGAGTTGGTGGCACCCTTTAGTCCTCAAAG-AGCAGGATGCCTTTT
* * * * * * *
1462999 TCCATTCAAAGGCCACAAGGGTTGGTGGCACCTTTTAGTCCACAAAGAGCAGGACGCCTTTT
1 TCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTT
* * * * *
1463061 TCTTTTCAAAGCCCAGA-TAGGTTGGTGGCACCCTTTAGTCCTTAAAGAGCAGCATGCCTTTT
1 TCCTTTCAAAGCCCACACGA-GTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTT
* *
1463123 TCCTTTCAAAGCCCACACGAGTTGGTGGCA-CCTTTAGTCCTCAAAAAGCAAGAT-CCTTTT
1 TCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTT
* * * * * * * * ** *
1463183 CTCGTTTAAAAGCCTACACGGGTTGGTAGC-CTCATTTTGTCCTCAAAGAGTAGGACACTTTTT
1 -TCCTTTCAAAGCCCACACGAGTTGGTGGCAC-CCTTTAGTCCTCAAAGAGCAGGATGCCTTTT
* * * * * ** * *
1463246 TCTTTTCAAAGCCCACACAAGTTTGTGACACTCTTTAGTTTTCAAATAGCAGGATACCTTTT
1 TCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTT
** * ** *
1463308 TCCTTTCAAAGCCCACGTGAGTTGGTGGCACCCTTCAGTCCTCAAAGAGCAGGACACTTTTT
1 TCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTT
* *
1463370 TCCTTTCAAAGCCCACAAGAGTTGGTGGCACCCTTTAGTCCTCGAAGAGCAGGATGCCTTTT
1 TCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTT
* * ** * * **
1463432 TCCTTTCAAAGCCCATACAAGTTGGCCGCACCCTTTAGTCCTCGAAGAGCAAGACACCTTTT
1 TCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTT
* ** * * **
1463494 TCTTTTCAAAGCAAACACGAGTTGGTGGCACCCTTTAGTCCTCGAAGAGGAGGACACCTTTT
1 TCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTT
* * * * ** * * *
1463556 TCCCTTCAAAGCCCAAACGAGTTGATGACATTCTTTTGTCTTGAAAGAGCAGGA--CACTTTT
1 TCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGC-CTTTT
* * * *
1463617 TTCTTCTCAAAACCCAC-CTGAGTTGGTGACACCCTTTAGTCCTCAAAGAGTCA-GATGTCTTTT
1 TCCTT-TCAAAGCCCACAC-GAGTTGGTGGCACCCTTTAGTCCTCAAAGAG-CAGGATGCCTTTT
* * * * * * * **
1463680 TCCTTTCAAAACCCACATGGGTTGG-CG-ACCTCATTTTGTCCTTAAAGAGTAGGAAACCTTTT
1 TCCTTTCAAAGCCCACACGAGTTGGTGGCACC-C-TTTAGTCCTCAAAGAGCAGGATGCCTTTT
* * * * * *
1463742 TCTTTTCAAAGCCTACACGTGTTGGTGGCACCCTTTAGTCCTCAATGAGCAAGACGCCTTTT
1 TCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTT
* * * * *
1463804 TCCTTTCAAAGTCCATACGAGTTTGTGGCACCCTTTAGTTCTTAAAGAGCAGGATGCCTTTT
1 TCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTT
** * * * ** *
1463866 TCCTTTCAAAGCCCACGTGAGTTAGTGGCACCCTTCAGTCCCTCAAAAAGTGGGACGCC-TTT
1 TCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGT-CCTCAAAGAGCAGGATGCCTTTT
* * * *
1463928 TCTTTTCAAAGCCCATACAAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGACGCCTTTT
1 TCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTT
* * * * * * * * * **
1463990 CCCTTTCAAATCCCACATGGGTCGGTGGCTCCCGTTAGCCCTCAAA-ACGTAGGACACCTTTT
1 TCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGTCCTCAAAGA-GCAGGATGCCTTTT
* * * * * *
1464052 TCCTTTCAAAGCCCACATGAGTTGGTCGCTCCCTTTAGCCCACAAAGAGCATGATGCCTTTT
1 TCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTT
* * * * * *
1464114 TCTTTTCAAAGCCCAGATGGGTTGGTGGCACCCTTTAGTCCTTAAAGAGTAGGATGCCTTTT
1 TCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTT
* * * *
1464176 TCTTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGTCCTCAAAAAGCAAGCTGCCTTTT
1 TCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTT
** * * * * * * * * **
1464238 TTGTTTTAAAACCCACACGGGTTGGCGGC-CTCATTTTGTCCTCAAAAAGTAGGACACCTTTTT
1 TCCTTTCAAAGCCCACACGAGTTGGTGGCAC-CCTTTAGTCCTCAAAGAGCAGGATGCC-TTTT
* ** * * * * *
1464301 TCTTTTCAAAGGTCACACGTGTTGGTGGAACCTTTTAGTCCTCAATGAGCAGGACGCCTTTT
1 TCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTT
* * * * **
1464363 TCCTTTTAAAGCCTACAGGAG-TGTGTGACACCCTTTAGTTTTCAAAGAGCAGGATGCCTTTT
1 TCCTTTCAAAGCCCACACGAGTTG-GTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTT
** * * ** *
1464425 TCCTTTCAAAGCCCATGCGAGTTGGTGGCACCCTTCAGTCCTCAAAGAGTAGGACACTTTTT
1 TCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTT
* * *
1464487 TCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGTCCTCGAAGAGTAGGACGCCTTTT
1 TCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTT
** * * * *
1464549 TCCTTTCAAAGCCCACGTGAGTTGGTGACA-CCTTTAAGTCCTCAAAGAGGAGGACGCCCTTT
1 TCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTT-AGTCCTCAAAGAGCAGGATGCCTTTT
* * * * * * * *
1464611 TCTTTTTAAAGCCCACACAAGTTGGTGGCACCCTCTAGTCCTCAAAAAACAAGACGCCTTTT
1 TCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTT
* * * * * * * * * * * **
1464673 TCCTTAT-AAATCCCATAGGGGTCGATGGCTCCCGTTAGCCCTCAAAAAGTAGGACACCTTTT
1 TCCTT-TCAAAGCCCACACGAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTT
** * * *
1464735 TCCTTTCAAAGCCCACACGAGTTGGTCACTCCCTTTAGTCCACAAAGAGCATGATGCCTTTT
1 TCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTT
* * * * * * * **
1464797 TCTTTTCAAAGCCTAGATGGGTTGGTGGCACCCTTTAGTCCTTAAAGAGTAGGATGTTTTTT
1 TCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTT
* * *
1464859 TCTTTTCAAAGCCCACACTGAGTTGGTGGCACCCTTTAGTCCTCAAAAAGCAGGATGCTTTTT
1 TCCTTTCAAAGCCCACAC-GAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTT
** * * * * * * * * **
1464922 TTGTTTTAAAACCCACACGGGTTAGCGGC-CTCATTTTGTCCTCAAAGAGTAGGACACCTTTT
1 TCCTTTCAAAGCCCACACGAGTTGGTGGCAC-CCTTTAGTCCTCAAAGAGCAGGATGCCTTTT
* * * * * * *
1464984 TCTTTTCAAAGGCCAGACGTGTTGGTGGCACCTTTTAGTTCTCAATGAGCAGGACT-CCTTTT
1 TCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGA-TGCCTTTT
* * * * * ** *
1465046 TCCTTTTAAAGTCTACACGAGTTTGTGTCACCCTTTAGTTTTCAAAGAGTAGGATGCCTTTT
1 TCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTT
* **
1465108 TCCTTTCAAAGCCCA-AGCGAGTTGGTGGCACCCTTCAGTCCTCAAAGAGCAGGACACCTTTT
1 TCCTTTCAAAGCCCACA-CGAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTT
* * * * *
1465170 TCCTTTCAAAGCCCGCACGAGTTGGTGGCACCTTTTAGTCTTCGAAGAGCATGATGCC-TTT
1 TCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTT
** * ** * *
1465231 TCCTTTTGAAGCCCACACGAGTTAGTGGCTTCCTTCAATCCTCAAAGAGCAGGATGCCTTTT
1 TCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTT
* * * * *
1465293 TCCTTTCACATCCCACAC-AGTTAGTGGCACCCTTTAGTCCTCAAAGAGCAAGATGCCATTT
1 TCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTT
* * * * *
1465354 CCCTTTTAAAGCCCACA-TAGTTGGTGGTGGCACCCTTTAGTCCTCTAAGAGCAAGATGCCTTTT
1 TCCTTTCAAAGCCCACACGAG-T--TGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTT
* * * * * * * *
1465418 TCTTTTCAGAGCCTAGA-TAGGTTAGTGGCACCCTTTAGTCCTCAAAGAGCAAGTTGCCTTTT
1 TCCTTTCAAAGCCCACACGA-GTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTT
* * * *
1465480 TCCTTTCAAAGACCACACGAGTTGGTGGCACCCTTTAGTCCTTAAAAAGTAGGATGCCTTTT
1 TCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTT
* * * * * * * * **
1465542 TCGTTTCAAAACCCACACGGGTTGGTGGCTCCATTTTGTCCTTAAAGAGTAGGACACCTTTT
1 TCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTT
* * * * * **
1465604 TCTTTTCAAACCCCACAC-ATGTTGGTGGCACCCTTTAGTCCTCAAAAAGCAAGACGTATTTT
1 TCCTTTCAAAGCCCACACGA-GTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTT
* * *
1465666 TCCTTTCAAAGCCCACACAAGTTTGTGGCACCCTTTAGTCCTCAAAGAGTAGGATGCCTTTT
1 TCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTT
1465728 TCCTTTCAAAG
1 TCCTTTCAAAG
1465739 TCTACGCTTG
Statistics
Matches: 4610, Mismatches: 1047, Indels: 388
0.76 0.17 0.06
Matches are distributed among these distances:
57 1 0.00
58 3 0.00
59 4 0.00
60 30 0.01
61 621 0.13
62 3552 0.77
63 225 0.05
64 73 0.02
65 14 0.00
66 17 0.00
67 8 0.00
68 21 0.00
69 15 0.00
70 14 0.00
71 8 0.00
72 1 0.00
74 2 0.00
75 1 0.00
ACGTcount: A:0.24, C:0.27, G:0.19, T:0.30
Consensus pattern (62 bp):
TCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTT
Found at i:1459902 original size:102 final size:102
Alignment explanation
Indices: 1459724--1459919 Score: 356
Period size: 102 Copynumber: 1.9 Consensus size: 102
1459714 GATGCCTTTT
* *
1459724 TCCTTTCAAAGCCCACACGAGTTTGTGGCACCCTTTAGTCCTCAAAGAGCAAGATGCCTTTTTCC
1 TCCTTTCAAAGCCCACACAAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAAGATGCCTTTTTCC
* *
1459789 TTTCAACGCCCACACGAGTTGGTGGCACCCTTCAGTC
66 TTTCAAAGCCCACACGAGTTGGTGACACCCTTCAGTC
1459826 TCCTTTCAAAGCCCACACAAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAAGATGCCTTTTTCC
1 TCCTTTCAAAGCCCACACAAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAAGATGCCTTTTTCC
1459891 TTTCAAAGCCCACACGAGTTGGTGACACC
66 TTTCAAAGCCCACACGAGTTGGTGACACC
1459920 TTTTAGTTCT
Statistics
Matches: 90, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
102 90 1.00
ACGTcount: A:0.23, C:0.32, G:0.18, T:0.27
Consensus pattern (102 bp):
TCCTTTCAAAGCCCACACAAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAAGATGCCTTTTTCC
TTTCAAAGCCCACACGAGTTGGTGACACCCTTCAGTC
Found at i:1461657 original size:41 final size:41
Alignment explanation
Indices: 1461580--1461659 Score: 115
Period size: 41 Copynumber: 2.0 Consensus size: 41
1461570 AACAGGAATT
* * * *
1461580 AGTGGCACCCTTTAGTCCTCAATGATCAGGATGCCTTTTCG
1 AGTGGCACCCTTTAGTCCTCAAAGAGCAAGACGCCTTTTCG
*
1461621 AGTGGTACCCTTTAGTCCTCAAAGAGCAAGACGCCTTTT
1 AGTGGCACCCTTTAGTCCTCAAAGAGCAAGACGCCTTTT
1461660 TCCTTTCAAA
Statistics
Matches: 34, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
41 34 1.00
ACGTcount: A:0.23, C:0.26, G:0.21, T:0.30
Consensus pattern (41 bp):
AGTGGCACCCTTTAGTCCTCAAAGAGCAAGACGCCTTTTCG
Found at i:1461722 original size:103 final size:102
Alignment explanation
Indices: 1461524--1461720 Score: 245
Period size: 103 Copynumber: 1.9 Consensus size: 102
1461514 AGTTGATGGC
* *
1461524 ACCCTTCAGTCCTCAAAAAGCAGGATGCCTTTTTCCTTTCAAACCCAACAGGAATTAGTGGCACC
1 ACCCTTCAGTCCTCAAAAAGCAAGACGCCTTTTTCCTTTCAAACCCAACAGG-ATTAGTGGCACC
* * * * **
1461589 CTTTAGTCCTCAATGATCAGGATGCCTTTTCGAGTGGT
65 CTTGAGTCCTCAAAGAACAAGACACCTTTTCGAGTGGT
* * *
1461627 ACCCTTTAGTCCTCAAAGAGCAAGACGCCTTTTTCCTTTCAAAGCCCACACA-G-TTGGTGGCAC
1 ACCCTTCAGTCCTCAAAAAGCAAGACGCCTTTTTCCTTTCAAA-CCCA-ACAGGATTAGTGGCAC
*
1461690 CGTTGAGTCCTCAAAGAACAAGACACCTTTT
64 CCTTGAGTCCTCAAAGAACAAGACACCTTTT
1461721 TCCCTTCAAA
Statistics
Matches: 80, Mismatches: 12, Indels: 5
0.82 0.12 0.05
Matches are distributed among these distances:
102 33 0.41
103 39 0.49
104 5 0.06
105 3 0.04
ACGTcount: A:0.26, C:0.28, G:0.18, T:0.27
Consensus pattern (102 bp):
ACCCTTCAGTCCTCAAAAAGCAAGACGCCTTTTTCCTTTCAAACCCAACAGGATTAGTGGCACCC
TTGAGTCCTCAAAGAACAAGACACCTTTTCGAGTGGT
Found at i:1461761 original size:164 final size:165
Alignment explanation
Indices: 1461457--1461763 Score: 413
Period size: 164 Copynumber: 1.9 Consensus size: 165
1461447 ACAAAAGTTG
* * * *
1461457 GTGGCACCCTTTAGTCCTCAAAGAGCAGGATGTCATTTTCCTTTCAAAGCCCGCACGAGTTGATG
1 GTGGCACCCTTTAGTCCTCAAAGAGCAAGACGCCATTTTCCTTTCAAAGCCCACACGAGTTGATG
* ** * *
1461522 GCACCCTTCAGTCCTCAAAAAGCAGGATGCCTTTTTCCTTTCAAACCCAACAGGAATTAGTGGCA
66 GCACCCTTCAGTCCTCAAAAAGCAAGACACCTTTTTCCCTTCAAACCCAACACGAATTAGTGGCA
1461587 CCCTTTAGTCCTCAATGATCAGGATGCCTTTTCGA
131 CCCTTTAGTCCTCAATGATCAGGATGCCTTTTCGA
* * *
1461622 GTGGTACCCTTTAGTCCTCAAAGAGCAAGACGCCTTTTTCCTTTCAAAGCCCACAC-AGTTGGTG
1 GTGGCACCCTTTAGTCCTCAAAGAGCAAGACGCCATTTTCCTTTCAAAGCCCACACGAGTTGATG
* * * * * *
1461686 GCACCGTTGAGTCCTCAAAGAA-CAAGACACCTTTTTCCCTTCAAAGCCTACACGAGTT-GTTGT
66 GCACCCTTCAGTCCTCAAA-AAGCAAGACACCTTTTTCCCTTCAAACCCAACACGAATTAG-TGG
1461749 CACCCTTTAGTCCTC
129 CACCCTTTAGTCCTC
1461764 GAAGAGTAGG
Statistics
Matches: 122, Mismatches: 18, Indels: 5
0.84 0.12 0.03
Matches are distributed among these distances:
163 1 0.01
164 69 0.57
165 52 0.43
ACGTcount: A:0.24, C:0.29, G:0.19, T:0.28
Consensus pattern (165 bp):
GTGGCACCCTTTAGTCCTCAAAGAGCAAGACGCCATTTTCCTTTCAAAGCCCACACGAGTTGATG
GCACCCTTCAGTCCTCAAAAAGCAAGACACCTTTTTCCCTTCAAACCCAACACGAATTAGTGGCA
CCCTTTAGTCCTCAATGATCAGGATGCCTTTTCGA
Found at i:1461813 original size:226 final size:227
Alignment explanation
Indices: 1461400--1461844 Score: 572
Period size: 226 Copynumber: 2.0 Consensus size: 227
1461390 TGTTGTTGGC
* *
1461400 ACCCTTTAGTGCTCAAAGAGCAAGACGTATTTTTCCTTTCACAACCCACAAAAGTTGGTGGCACC
1 ACCCTTTAGTCCTCAAAGAGCAAGACGCATTTTTCCTTTCACAACCCACAAAAGTTGGTGGCACC
* * * *** * *
1461465 CTTTAGTCCTCAAAGAGCAGGATGTCATTTTCCTTTCAAAGCCCGCACGAGTTGATGGCACCCTT
66 CTTGAGTCCTCAAAGAACAAGACACCATTTTCCCTTCAAAGCCCACACGAGTTGATGGCACCCTT
** *
1461530 CAGTCCTCAAAAAGCAGGATGCCTTTTTCCTTTCAAACCCAACAGGAATTAGTGGCACCCTTTAG
131 CAGTCCTCAAAAAGCAGGACACCTTTTTCCTTTCAAACCCAACACGAATTAGTGGCACCCTTTAG
* * * *
1461595 TCCTCAATGATCAGGATGCCTTTTCGAGTGGT
196 TCCCCAAAGAGCAGGACGCCTTTTCGAGTGGT
* *
1461627 ACCCTTTAGTCCTCAAAGAGCAAGACGCCTTTTTCCTTTCA-AAGCCCAC-ACAGTTGGTGGCAC
1 ACCCTTTAGTCCTCAAAGAGCAAGACGCATTTTTCCTTTCACAA-CCCACAAAAGTTGGTGGCAC
* * * * *
1461690 CGTTGAGTCCTCAAAGAACAAGACACCTTTTTCCCTTCAAAGCCTACACGAGTTGTTGTCACCCT
65 CCTTGAGTCCTCAAAGAACAAGACACCATTTTCCCTTCAAAGCCCACACGAGTTGATGGCACCCT
* * * * * * *
1461755 TTAGTCCTCGAAGAGTAGGACACTTTTTTCCTTTCAAAGCCC-ACACGAGTTGGTGGCACCCTTT
130 TCAGTCCTCAAAAAGCAGGACACCTTTTTCCTTTCAAA-CCCAACACGAATTAGTGGCACCCTTT
1461819 AGTCCCCAAAGAGCAGGACGCCTTTT
194 AGTCCCCAAAGAGCAGGACGCCTTTT
1461845 TCTTTTCAAA
Statistics
Matches: 185, Mismatches: 31, Indels: 5
0.84 0.14 0.02
Matches are distributed among these distances:
226 139 0.75
227 46 0.25
ACGTcount: A:0.25, C:0.28, G:0.19, T:0.28
Consensus pattern (227 bp):
ACCCTTTAGTCCTCAAAGAGCAAGACGCATTTTTCCTTTCACAACCCACAAAAGTTGGTGGCACC
CTTGAGTCCTCAAAGAACAAGACACCATTTTCCCTTCAAAGCCCACACGAGTTGATGGCACCCTT
CAGTCCTCAAAAAGCAGGACACCTTTTTCCTTTCAAACCCAACACGAATTAGTGGCACCCTTTAG
TCCCCAAAGAGCAGGACGCCTTTTCGAGTGGT
Found at i:1462024 original size:40 final size:40
Alignment explanation
Indices: 1461969--1462044 Score: 134
Period size: 40 Copynumber: 1.9 Consensus size: 40
1461959 GATGCCTTTT
*
1461969 TCCTTTCAATGCCCACACGAGTTGGTGGCACCCTTCGGTC
1 TCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTCGGTC
*
1462009 TCCTTTCAAAGCCCACACTAGTTGGTGGCACCCTTC
1 TCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTC
1462045 TGTCCCCAAA
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
40 34 1.00
ACGTcount: A:0.17, C:0.36, G:0.20, T:0.28
Consensus pattern (40 bp):
TCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTCGGTC
Found at i:1462085 original size:102 final size:102
Alignment explanation
Indices: 1461907--1462102 Score: 313
Period size: 102 Copynumber: 1.9 Consensus size: 102
1461897 GATGCCTTTT
* * *
1461907 TCCTTTCAAAGCCCATACGAGTTTGTGGCACCCTTTAGTCCTCAAAGAGCAAGATGCCTTTTTCC
1 TCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGTCCCCAAAGAGCAAGATGCCTTTTTCC
* *
1461972 TTTCAATGCCCACACGAGTTGGTGGCACCCTTCGGTC
66 TTTCAAAGCCCACACAAGTTGGTGGCACCCTTCGGTC
* *
1462009 TCCTTTCAAAGCCCACACTAGTTGGTGGCACCCTTCT-GTCCCCAAAGAGCAGGATGCCTTTTTC
1 TCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTT-TAGTCCCCAAAGAGCAAGATGCCTTTTTC
1462073 CTTTCAAAGCCCACACAAGTTGGTGGCACC
65 CTTTCAAAGCCCACACAAGTTGGTGGCACC
1462103 TTTTAGTCCT
Statistics
Matches: 86, Mismatches: 7, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
102 85 0.99
103 1 0.01
ACGTcount: A:0.21, C:0.32, G:0.19, T:0.28
Consensus pattern (102 bp):
TCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGTCCCCAAAGAGCAAGATGCCTTTTTCC
TTTCAAAGCCCACACAAGTTGGTGGCACCCTTCGGTC
Found at i:1462120 original size:164 final size:163
Alignment explanation
Indices: 1461848--1462166 Score: 491
Period size: 164 Copynumber: 2.0 Consensus size: 163
1461838 GCCTTTTTCT
* *
1461848 TTTCAAAGCCCACATAAGTTGGTGGCACCCTTTAGTCCTCAAAGAGTAGGATGCCTTTTTCCTTT
1 TTTCAAAGCCCACATAAGTTGGTGGCACCCTTTAGTCCCCAAAGAGCAGGATGCCTTTTTCCTTT
* * * *
1461913 CAAAGCCCATACGAGTTTGTGGCACCCTTTAGTCCTCAAAGAGCAAGA-TGCCTTTTTCCTTTCA
66 CAAAGCCCACACAAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAAGACT-ACTTTTTCCTTTCA
*
1461977 ATGCCCACACGAGTTGGTGGCACCCTTCGGTCTCC
130 AAGCCCACAC-AGTTGGTGGCACCCTTCGGTCTCC
1462012 TTTCAAAGCCCACACT-AGTTGGTGGCACCCTTCT-GTCCCCAAAGAGCAGGATGCCTTTTTCCT
1 TTTCAAAGCCCACA-TAAGTTGGTGGCACCCTT-TAGTCCCCAAAGAGCAGGATGCCTTTTTCCT
* * *
1462075 TTCAAAGCCCACACAAGTTGGTGGCACCTTTTAGTCCTTAAAGAGCACGACTACTTTTTCCTTTC
64 TTCAAAGCCCACACAAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAAGACTACTTTTTCCTTTC
1462140 AAAGCCCACACAGTTGGTGGCACCCTT
129 AAAGCCCACACAGTTGGTGGCACCCTT
1462167 TAGTCTTCAA
Statistics
Matches: 142, Mismatches: 10, Indels: 7
0.89 0.06 0.04
Matches are distributed among these distances:
163 16 0.11
164 123 0.87
165 3 0.02
ACGTcount: A:0.23, C:0.29, G:0.19, T:0.29
Consensus pattern (163 bp):
TTTCAAAGCCCACATAAGTTGGTGGCACCCTTTAGTCCCCAAAGAGCAGGATGCCTTTTTCCTTT
CAAAGCCCACACAAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAAGACTACTTTTTCCTTTCAA
AGCCCACACAGTTGGTGGCACCCTTCGGTCTCC
Found at i:1469836 original size:16 final size:16
Alignment explanation
Indices: 1469812--1469842 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
1469802 AAAGGCTTTC
*
1469812 AAAATTTTTAATAGAA
1 AAAAGTTTTAATAGAA
1469828 AAAAGTTTTAATAGA
1 AAAAGTTTTAATAGA
1469843 GGAAATGTTG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.55, C:0.00, G:0.10, T:0.35
Consensus pattern (16 bp):
AAAAGTTTTAATAGAA
Found at i:1473773 original size:20 final size:19
Alignment explanation
Indices: 1473748--1473812 Score: 67
Period size: 19 Copynumber: 3.3 Consensus size: 19
1473738 ATGTATTGAT
*
1473748 ATACATATCCAGATGTATCG
1 ATACATATCCA-TTGTATCG
* *
1473768 ATACATTATGCTTTGTATCG
1 ATACA-TATCCATTGTATCG
* *
1473788 ATACATGTTCATTGTATCG
1 ATACATATCCATTGTATCG
1473807 ATACAT
1 ATACAT
1473813 GCACAATTTT
Statistics
Matches: 38, Mismatches: 6, Indels: 3
0.81 0.13 0.06
Matches are distributed among these distances:
19 17 0.45
20 17 0.45
21 4 0.11
ACGTcount: A:0.31, C:0.17, G:0.14, T:0.38
Consensus pattern (19 bp):
ATACATATCCATTGTATCG
Found at i:1473804 original size:19 final size:19
Alignment explanation
Indices: 1473761--1473833 Score: 76
Period size: 20 Copynumber: 3.7 Consensus size: 19
1473751 CATATCCAGA
*
1473761 TGTATCGATACAT-TATGCTT
1 TGTATCGATACATGT-T-CAT
1473781 TGTATCGATACATGTTCAT
1 TGTATCGATACATGTTCAT
**
1473800 TGTATCGATACATGCACAAT
1 TGTATCGATACATGTTC-AT
*
1473820 TTTATCGATACATG
1 TGTATCGATACATG
1473834 AAACTGGCAG
Statistics
Matches: 47, Mismatches: 4, Indels: 4
0.85 0.07 0.07
Matches are distributed among these distances:
19 17 0.36
20 29 0.62
21 1 0.02
ACGTcount: A:0.29, C:0.16, G:0.15, T:0.40
Consensus pattern (19 bp):
TGTATCGATACATGTTCAT
Done.