Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold215
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 2124891
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
File 15 of 16
Found at i:1837459 original size:248 final size:247
Alignment explanation
Indices: 1836859--1837618 Score: 1145
Period size: 248 Copynumber: 3.1 Consensus size: 247
1836849 GGACTGAAAA
* * ** * *
1836859 GTGTGGGCTTTAAAAG-GAAAAGGCGTCCTGCTCCTTGAGGACTGAAATGTGCCACCAACTTATG
1 GTGTGGGCTTTAAAAGAAAAAAAGCAACCTGCTCCTTGAGGACTG-AAGGTGCCACCAACTTGTG
* *
1836923 TGGGCTTTAAAAGGAAAAGGTGTCCTGCTCTTTGAGGACTA-AAAAGTGCCACCAAAC-TGTGTG
65 TGGGCTTTAAAAGGAAAAGGTGTCTTGCTCTTTGAAGACTAGAAAAGTGCCACC-AACTTGTGTG
* * *
1836986 GGCTTTAAAAGGAAAAGGCGTCCTGCTTCTTGAGGA-CTGAAAAGTGCCACCAACTTGTGTGTGC
129 GGCTTTAAAAGGAAAAGGCGTCCTGCTCCTTGAGGACCAGAAAAGTGCCACCAACTTGTGTGGGC
*
1837050 TTTAAAAGGAAAAGGCATCCTACTCCTTGAGGAC-CGAAAAGTGCCACCAACTT
194 TTTAAAAGGAAAAGGCATCCTACTCCTTGAGGACTAGAAAAGTGCCACCAACTT
* * * *
1837103 GTGTGGGCTTTAAGAGAAAAAAAGCATCCTACTCCTCGAGGACTGAAGGTGCCACCAACTTGTGT
1 GTGTGGGCTTTAAAAGAAAAAAAGCAACCTGCTCCTTGAGGACTGAAGGTGCCACCAACTTGTGT
* * *
1837168 GGGTTTTAAAAGGAAAAGGTGTCTTGCTCTTTGAAGACTAGAAAAGTGCCACCGACTTATGTGGG
66 GGGCTTTAAAAGGAAAAGGTGTCTTGCTCTTTGAAGACTAGAAAAGTGCCACCAACTTGTGTGGG
* * *
1837233 CATTAAAAGGAAAAGGCATCCTGCTCCTTGAGGACCAGAAAAATGCCACCAACTTGTGTGGGCTT
131 CTTTAAAAGGAAAAGGCGTCCTGCTCCTTGAGGACCAGAAAAGTGCCACCAACTTGTGTGGGCTT
* * *
1837298 TAAAAGGAAAATGCATCCTACTCTTTGAGGACTAG-AAGGTGCCACCAACTT
196 TAAAAGGAAAAGGCATCCTACTCCTTGAGGACTAGAAAAGTGCCACCAACTT
*
1837349 GTGTGGGCTTTAAAAGAATAAAAAAGTAACCTGCTCCTTGAGGACTGAAGGTGCCACCAACTTGT
1 GTGTGGGCTTTAAAAG-A-AAAAAAGCAACCTGCTCCTTGAGGACTGAAGGTGCCACCAACTTGT
*
1837414 GTGGGCTTTAAAAGGAAAAGGCGTCTTGCTCTTTGAAGACTAGAAAAGTGCCACCAACTTGTGTG
64 GTGGGCTTTAAAAGGAAAAGGTGTCTTGCTCTTTGAAGACTAGAAAAGTGCCACCAACTTGTGTG
* * *
1837479 GGCTTTAAAAAGAAAAGACGTCCTGCTCCTTAAGGACCAGAAAAGTGCCACCAACTTGTGTGGGC
129 GGCTTTAAAAGGAAAAGGCGTCCTGCTCCTTGAGGACCAGAAAAGTGCCACCAACTTGTGTGGGC
* *
1837544 TTTAAAAGGAAAAGGCATCCTCCTCCTTGAGGACTAGAAAAGTGCCATCAACTT
194 TTTAAAAGGAAAAGGCATCCTACTCCTTGAGGACTAGAAAAGTGCCACCAACTT
*
1837598 GTGTGGGCTTTAAAAGGAAAA
1 GTGTGGGCTTTAAAAGAAAAA
1837619 GGTGTCCTGC
Statistics
Matches: 464, Mismatches: 44, Indels: 13
0.89 0.08 0.02
Matches are distributed among these distances:
244 72 0.16
245 73 0.16
246 87 0.19
247 6 0.01
248 196 0.42
249 30 0.06
ACGTcount: A:0.31, C:0.20, G:0.25, T:0.24
Consensus pattern (247 bp):
GTGTGGGCTTTAAAAGAAAAAAAGCAACCTGCTCCTTGAGGACTGAAGGTGCCACCAACTTGTGT
GGGCTTTAAAAGGAAAAGGTGTCTTGCTCTTTGAAGACTAGAAAAGTGCCACCAACTTGTGTGGG
CTTTAAAAGGAAAAGGCGTCCTGCTCCTTGAGGACCAGAAAAGTGCCACCAACTTGTGTGGGCTT
TAAAAGGAAAAGGCATCCTACTCCTTGAGGACTAGAAAAGTGCCACCAACTT
Found at i:1838635 original size:11 final size:11
Alignment explanation
Indices: 1838619--1838656 Score: 51
Period size: 11 Copynumber: 3.5 Consensus size: 11
1838609 GGTTCTTTTA
1838619 TTTTTTCTCTT
1 TTTTTTCTCTT
1838630 TTTTTTCTCTT
1 TTTTTTCTCTT
* *
1838641 TGTTTTGT-TT
1 TTTTTTCTCTT
1838651 TTTTTT
1 TTTTTT
1838657 GTTATTGTTT
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
10 7 0.29
11 17 0.71
ACGTcount: A:0.00, C:0.11, G:0.05, T:0.84
Consensus pattern (11 bp):
TTTTTTCTCTT
Found at i:1838668 original size:16 final size:16
Alignment explanation
Indices: 1838639--1838683 Score: 62
Period size: 13 Copynumber: 3.1 Consensus size: 16
1838629 TTTTTTTCTC
1838639 TTTGTT-TTGTTTTTT
1 TTTGTTATTGTTTTTT
1838654 TTTGTTATTG---TTT
1 TTTGTTATTGTTTTTT
1838667 TTTGTTATTGTTTTTT
1 TTTGTTATTGTTTTTT
1838683 T
1 T
1838684 GTTTTTTTTT
Statistics
Matches: 26, Mismatches: 0, Indels: 7
0.79 0.00 0.21
Matches are distributed among these distances:
13 13 0.50
15 6 0.23
16 7 0.27
ACGTcount: A:0.04, C:0.00, G:0.13, T:0.82
Consensus pattern (16 bp):
TTTGTTATTGTTTTTT
Found at i:1838669 original size:14 final size:14
Alignment explanation
Indices: 1838650--1838686 Score: 67
Period size: 13 Copynumber: 2.7 Consensus size: 14
1838640 TTGTTTTGTT
1838650 TTTTTTTGTTATTG
1 TTTTTTTGTTATTG
1838664 -TTTTTTGTTATTG
1 TTTTTTTGTTATTG
1838677 TTTTTTTGTT
1 TTTTTTTGTT
1838687 TTTTTTTAGA
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
13 13 0.59
14 9 0.41
ACGTcount: A:0.05, C:0.00, G:0.14, T:0.81
Consensus pattern (14 bp):
TTTTTTTGTTATTG
Found at i:1838693 original size:13 final size:13
Alignment explanation
Indices: 1838614--1838693 Score: 61
Period size: 13 Copynumber: 5.7 Consensus size: 13
1838604 AAGCAGGTTC
* *
1838614 TTTTATTTTTTCTC
1 TTTT-TTTTTTTTG
1838628 TTTTTTTTCTCTTTG
1 TTTTTTTT-T-TTTG
1838643 TTTTGTTTTTTTTTG
1 -TTT-TTTTTTTTTG
* *
1838658 TTATTGTTTTTTG
1 TTTTTTTTTTTTG
*
1838671 TTATTGTTTTTTTG
1 TT-TTTTTTTTTTG
1838685 TTTTTTTTT
1 TTTTTTTTT
1838694 AGAAAAAAAT
Statistics
Matches: 53, Mismatches: 8, Indels: 11
0.74 0.11 0.15
Matches are distributed among these distances:
13 21 0.40
14 17 0.32
15 6 0.11
16 4 0.08
17 5 0.09
ACGTcount: A:0.04, C:0.05, G:0.09, T:0.82
Consensus pattern (13 bp):
TTTTTTTTTTTTG
Found at i:1851123 original size:79 final size:78
Alignment explanation
Indices: 1850973--1851386 Score: 391
Period size: 79 Copynumber: 5.3 Consensus size: 78
1850963 TGGGGATAAC
* * * * * *
1850973 AACGGGGCTCGAGTATCTCCGATTATGGAAAATTGGTGTTTTG-AAATAAAATTGGGGTTGGAGT
1 AACGGGGTTGGAGTATCCCCGATTGT-GAAAATTGATGTTTTGAAAATAAAATCGGGGTTGGAGT
**
1851037 ATCCCCTCGGAAAT
65 ATCCCCTCAAAAAT
** * * * * *
1851051 AACAAGGTTAGAGTATCCCTGATTATAGAAAATCGATGTTTTGAAAATAAAATTGGGGTTGGAGT
1 AACGGGGTTGGAGTATCCCCGATTGT-GAAAATTGATGTTTTGAAAATAAAATCGGGGTTGGAGT
*
1851116 ATCCCCTCGAAAAT
65 ATCCCCTCAAAAAT
* * *
1851130 AACGGGGTTGGAGTGTCCCCTATTGTGAAAAATTGGTGTTTTGAAAATAAAATCGGGGTTGGAGT
1 AACGGGGTTGGAGTATCCCCGATTGTG-AAAATTGATGTTTTGAAAATAAAATCGGGGTTGGAGT
1851195 ATCCCCTCAAAAAT
65 ATCCCCTCAAAAAT
* * * *** *
1851209 AATGGGGTTGGAGTATCCCCAATTGTGGAAAATTGATGCTTT-AGAAATAAGGCCGGGGTTCGAG
1 AACGGGGTTGGAGTATCCCCGATTGT-GAAAATTGATGTTTTGA-AAATAAAATCGGGGTTGGAG
* *
1851273 TATCCTCGCAAAAAT
64 TATCCCCTCAAAAAT
** * ** * * * **
1851288 AACAAGGTTGAAGTATCCCCGATTGTGAGAAATCAATATTTTAAAAAGAAAGCCGGGGTTGGAGT
1 AACGGGGTTGGAGTATCCCCGATTGTGA-AAATTGATGTTTTGAAAATAAAATCGGGGTTGGAGT
* **
1851353 ATCCCTTCTGAAAT
65 ATCCCCTCAAAAAT
1851367 AACGGGGTTGGAGTATCCCC
1 AACGGGGTTGGAGTATCCCC
1851387 AATGAAATAA
Statistics
Matches: 278, Mismatches: 52, Indels: 11
0.82 0.15 0.03
Matches are distributed among these distances:
78 38 0.14
79 238 0.86
80 2 0.01
ACGTcount: A:0.32, C:0.15, G:0.26, T:0.28
Consensus pattern (78 bp):
AACGGGGTTGGAGTATCCCCGATTGTGAAAATTGATGTTTTGAAAATAAAATCGGGGTTGGAGTA
TCCCCTCAAAAAT
Found at i:1851374 original size:28 final size:28
Alignment explanation
Indices: 1851341--1851417 Score: 127
Period size: 28 Copynumber: 2.8 Consensus size: 28
1851331 AAAAGAAAGC
***
1851341 CGGGGTTGGAGTATCCCTTCTGAAATAA
1 CGGGGTTGGAGTATCCCCAATGAAATAA
1851369 CGGGGTTGGAGTATCCCCAATGAAATAA
1 CGGGGTTGGAGTATCCCCAATGAAATAA
1851397 CGGGGTTGGAGTATCCCCAAT
1 CGGGGTTGGAGTATCCCCAAT
1851418 TGTGAAAAAT
Statistics
Matches: 46, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
28 46 1.00
ACGTcount: A:0.26, C:0.19, G:0.30, T:0.25
Consensus pattern (28 bp):
CGGGGTTGGAGTATCCCCAATGAAATAA
Found at i:1851460 original size:78 final size:78
Alignment explanation
Indices: 1851369--1851621 Score: 319
Period size: 79 Copynumber: 3.2 Consensus size: 78
1851359 TCTGAAATAA
* *
1851369 CGGGGTTGGAGTATCCCCAATGAAATAACGGGGTTGGAGTATCCCCAATTGTGAAAAATTGGTGT
1 CGGGGTTGGAGTATCCCCTA-GAAATAACGGGGTTGGAGTATCCCCGATTGTGAAAAATTGGTGT
1851434 TTTGGAAATAAAAT
65 TTTGGAAATAAAAT
* * * * *
1851448 C-AGGTTGAAGTATCTCCTTAGAAATAACGGGGTTCGAGTATCCTCGATTGTGAAAAATTGGTGT
1 CGGGGTTGGAGTATC-CCCTAGAAATAACGGGGTTGGAGTATCCCCGATTGTGAAAAATTGGTGT
*
1851512 TTTGGGAATAAAAT
65 TTTGGAAATAAAAT
* * * * * *
1851526 CGGGGTTGGAGTATTCCCTCGAAAATAACGGGATTGGAGAATCCCCGATTATGAAAAATTGATGT
1 CGGGGTTGGAGTATCCCCTAG-AAATAACGGGGTTGGAGTATCCCCGATTGTGAAAAATTGGTGT
** *
1851591 TTTAAAAATAAAAC
65 TTTGGAAATAAAAT
1851605 CGGGGTTGGAGTATCCC
1 CGGGGTTGGAGTATCCC
1851622 TGAGATGAAA
Statistics
Matches: 147, Mismatches: 24, Indels: 6
0.83 0.14 0.03
Matches are distributed among these distances:
78 70 0.48
79 77 0.52
ACGTcount: A:0.32, C:0.13, G:0.26, T:0.28
Consensus pattern (78 bp):
CGGGGTTGGAGTATCCCCTAGAAATAACGGGGTTGGAGTATCCCCGATTGTGAAAAATTGGTGTT
TTGGAAATAAAAT
Found at i:1851621 original size:264 final size:264
Alignment explanation
Indices: 1851105--1851622 Score: 668
Period size: 264 Copynumber: 2.0 Consensus size: 264
1851095 AAATAAAATT
* *
1851105 GGGGTTGGAGTATCCCCTCGAAAATAACGGGGTTGGAGTGTCCCCTATTGTGAAAAATTGGTGTT
1 GGGGTTGGAGTATCCCCTCGAAAATAACGGGGTTGGAGTATCCCCAATTGTGAAAAATTGGTGTT
* * * *
1851170 TTGAAAATAAAATCGGGGTTGGAGTATCCCCTCAAAAATAATGGGGTTGGAGTATCCCCAATTGT
66 TTGAAAATAAAATCGAGGTTGAAGTATCCCCTCAAAAATAACGGGGTTCGAGTATCCCCAATTGT
* **
1851235 GGAAAATTGATGCTTTAGAAATAAGGCCGGGGTTCGAGTATCCTCGCAAAAATAACAAGGTTGAA
131 GAAAAATTGATGCTTTAGAAATAAAACCGGGGTTCGAGTATCCTCG-AAAAATAACAAGGTTGAA
* * * *
1851300 GTATCCCCGATTGTGAGAAATCAATATTTTAAAAAGAAAGCCGGGGTTGGAGTATCCCTTCTGAA
195 GAATCCCCGATTATGAAAAATCAATATTTTAAAAAGAAAACCGGGGTTGGAGTATCCCTTCTGAA
1851365 ATAAC
260 ATAAC
1851370 GGGGTTGGAGTATCCCCAAT-G-AAATAACGGGGTTGGAGTATCCCCAATTGTGAAAAATTGGTG
1 GGGGTTGGAGTATCCCC--TCGAAAATAACGGGGTTGGAGTATCCCCAATTGTGAAAAATTGGTG
* * * * * *
1851433 TTTTGGAAATAAAATC-AGGTTGAAGTATCTCCTTAGAAATAACGGGGTTCGAGTATCCTCGATT
64 TTTTGAAAATAAAATCGAGGTTGAAGTATCCCCTCAAAAATAACGGGGTTCGAGTATCCCCAATT
* * * * * * *
1851497 GTGAAAAATTGGTGTTTTGGGAATAAAATCGGGGTTGGAGTATTCCCTCG-AAAATAAC-GGGAT
129 GTGAAAAATTGATGCTTTAGAAATAAAACCGGGGTTCGAGTA-T-CCTCGAAAAATAACAAGG-T
* ** * *
1851560 TGGAGAATCCCCGATTATGAAAAATTGATGTTTTAAAAATAAAACCGGGGTTGGAGTATCCCT
191 TGAAGAATCCCCGATTATGAAAAATCAATATTTTAAAAAGAAAACCGGGGTTGGAGTATCCCT
1851623 GAGATGAAAA
Statistics
Matches: 217, Mismatches: 31, Indels: 11
0.84 0.12 0.04
Matches are distributed among these distances:
263 2 0.01
264 135 0.62
265 73 0.34
266 6 0.03
267 1 0.00
ACGTcount: A:0.32, C:0.14, G:0.26, T:0.28
Consensus pattern (264 bp):
GGGGTTGGAGTATCCCCTCGAAAATAACGGGGTTGGAGTATCCCCAATTGTGAAAAATTGGTGTT
TTGAAAATAAAATCGAGGTTGAAGTATCCCCTCAAAAATAACGGGGTTCGAGTATCCCCAATTGT
GAAAAATTGATGCTTTAGAAATAAAACCGGGGTTCGAGTATCCTCGAAAAATAACAAGGTTGAAG
AATCCCCGATTATGAAAAATCAATATTTTAAAAAGAAAACCGGGGTTGGAGTATCCCTTCTGAAA
TAAC
Found at i:1853993 original size:13 final size:13
Alignment explanation
Indices: 1853975--1854004 Score: 51
Period size: 13 Copynumber: 2.3 Consensus size: 13
1853965 GTAAACCTAG
1853975 AATGTATCGATAC
1 AATGTATCGATAC
*
1853988 AATGTATCGATAT
1 AATGTATCGATAC
1854001 AATG
1 AATG
1854005 AATAATGTAT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.40, C:0.10, G:0.17, T:0.33
Consensus pattern (13 bp):
AATGTATCGATAC
Found at i:1854014 original size:62 final size:63
Alignment explanation
Indices: 1853930--1854054 Score: 207
Period size: 62 Copynumber: 2.0 Consensus size: 63
1853920 TGTTTGAATA
* *
1853930 TATCGATACATTGAAAAATGTATCGATACATCTAGGT-AAACCTAGAATGTATCGATACAATG
1 TATCGATACAATGAAAAATGTATCGATACATCTAGGTAAAACCCAGAATGTATCGATACAATG
* *
1853992 TATCGATATAATGAATAATGTATCGATACATCTAGGTAAAACCCAGAATGTATCGATACAATG
1 TATCGATACAATGAAAAATGTATCGATACATCTAGGTAAAACCCAGAATGTATCGATACAATG
1854055 AACAATGTAT
Statistics
Matches: 58, Mismatches: 4, Indels: 1
0.92 0.06 0.02
Matches are distributed among these distances:
62 34 0.59
63 24 0.41
ACGTcount: A:0.41, C:0.14, G:0.16, T:0.29
Consensus pattern (63 bp):
TATCGATACAATGAAAAATGTATCGATACATCTAGGTAAAACCCAGAATGTATCGATACAATG
Found at i:1854044 original size:30 final size:30
Alignment explanation
Indices: 1853946--1854051 Score: 106
Period size: 30 Copynumber: 3.5 Consensus size: 30
1853936 TACATTGAAA
*
1853946 AATGTATCGATACATCTAGGT-AAACCTAG
1 AATGTATCGATACATCTAGGTAAAACCAAG
* * * ** *
1853975 AATGTATCGATACAATGTATCGATATAATGAAT
1 AATGTATCGATAC-ATCTA--GGTAAAACCAAG
*
1854008 AATGTATCGATACATCTAGGTAAAACCCAG
1 AATGTATCGATACATCTAGGTAAAACCAAG
1854038 AATGTATCGATACA
1 AATGTATCGATACA
1854052 ATGAACAATG
Statistics
Matches: 59, Mismatches: 14, Indels: 7
0.74 0.17 0.09
Matches are distributed among these distances:
29 13 0.22
30 24 0.41
32 6 0.10
33 16 0.27
ACGTcount: A:0.41, C:0.15, G:0.16, T:0.28
Consensus pattern (30 bp):
AATGTATCGATACATCTAGGTAAAACCAAG
Found at i:1862328 original size:21 final size:20
Alignment explanation
Indices: 1862285--1862328 Score: 52
Period size: 21 Copynumber: 2.1 Consensus size: 20
1862275 AATTCAATCC
* **
1862285 TCAAATTCTTCAAATATTTT
1 TCAAATTCATCAAATATACT
1862305 TCAAATTTCATCAAATATACT
1 TCAAA-TTCATCAAATATACT
1862326 TCA
1 TCA
1862329 TACTATTCAT
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
20 5 0.25
21 15 0.75
ACGTcount: A:0.39, C:0.18, G:0.00, T:0.43
Consensus pattern (20 bp):
TCAAATTCATCAAATATACT
Found at i:1864930 original size:13 final size:13
Alignment explanation
Indices: 1864908--1864948 Score: 57
Period size: 13 Copynumber: 3.2 Consensus size: 13
1864898 TTAAAACTTA
1864908 GTATCGATACA-G
1 GTATCGATACATG
*
1864920 TGTATCAATACATG
1 -GTATCGATACATG
1864934 GTATCGATACATG
1 GTATCGATACATG
1864947 GT
1 GT
1864949 GAAATATATC
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
13 24 0.96
14 1 0.04
ACGTcount: A:0.32, C:0.15, G:0.22, T:0.32
Consensus pattern (13 bp):
GTATCGATACATG
Found at i:1870862 original size:20 final size:20
Alignment explanation
Indices: 1870837--1870926 Score: 92
Period size: 21 Copynumber: 4.3 Consensus size: 20
1870827 CTTTATTTTC
1870837 ATCGATACA-AGTGAAAATGT
1 ATCGATACATA-TGAAAATGT
*
1870857 ATCGATACATTATGTAAATGT
1 ATCGATACA-TATGAAAATGT
*
1870878 ATCGATACATTATGTAAATGT
1 ATCGATACA-TATGAAAATGT
* **
1870899 ATTGATACATTATGTGAATGT
1 ATCGATACA-TATGAAAATGT
1870920 ATCGATA
1 ATCGATA
1870927 AATCATGTTG
Statistics
Matches: 64, Mismatches: 4, Indels: 3
0.90 0.06 0.04
Matches are distributed among these distances:
20 9 0.14
21 54 0.84
22 1 0.02
ACGTcount: A:0.39, C:0.09, G:0.17, T:0.36
Consensus pattern (20 bp):
ATCGATACATATGAAAATGT
Found at i:1870934 original size:21 final size:21
Alignment explanation
Indices: 1870851--1870926 Score: 134
Period size: 21 Copynumber: 3.6 Consensus size: 21
1870841 ATACAAGTGA
1870851 AAATGTATCGATACATTATGT
1 AAATGTATCGATACATTATGT
1870872 AAATGTATCGATACATTATGT
1 AAATGTATCGATACATTATGT
*
1870893 AAATGTATTGATACATTATGT
1 AAATGTATCGATACATTATGT
*
1870914 GAATGTATCGATA
1 AAATGTATCGATA
1870927 AATCATGTTG
Statistics
Matches: 52, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 52 1.00
ACGTcount: A:0.38, C:0.08, G:0.16, T:0.38
Consensus pattern (21 bp):
AAATGTATCGATACATTATGT
Found at i:1871011 original size:134 final size:133
Alignment explanation
Indices: 1870760--1871021 Score: 327
Period size: 134 Copynumber: 2.0 Consensus size: 133
1870750 TTCAGGATTG
* * * * *
1870760 AATGTATTGATACATCTTTTGAATGTATCAATACATTTCGTTGGCAGTAGCTATAAAATGCTAAA
1 AATGTATTGATACATCTTGTGAATGTATCAATAAATATCGTTGGCAGTAGCTAAAAAATCCTAAA
* * *
1870825 ACCTTTATTTTCATCGATACAAGTGAAAATGTATCGATACATTATGTAAATGTATCGATACATTA
66 ACCTTCATTTTCATCGATACAAGTGAAAATGTATCGATACAATATG-AAATGTATCAATACATTA
1870890 TGTA
130 TGTA
*
1870894 AATGTATTGATACAT-TATGTGAATGTATCGATAAATCAT-GTTGGCAGTAGCTAAAAAAATCCT
1 AATGTATTGATACATCT-TGTGAATGTATCAATAAAT-ATCGTTGGCAGTAGCT-AAAAAATCCT
* *
1870957 AAAACCTTCATTTGT-ATCGATACACA-TGAAATTGTATTGATACAATAT-AGAATGTATCAATA
63 AAAACCTTCATTT-TCATCGATACA-AGTGAAAATGTATCGATACAATATGA-AATGTATCAATA
1871019 CAT
125 CAT
1871022 CCCTAAATGT
Statistics
Matches: 111, Mismatches: 11, Indels: 12
0.83 0.08 0.09
Matches are distributed among these distances:
133 2 0.02
134 58 0.52
135 49 0.44
136 2 0.02
ACGTcount: A:0.38, C:0.13, G:0.14, T:0.35
Consensus pattern (133 bp):
AATGTATTGATACATCTTGTGAATGTATCAATAAATATCGTTGGCAGTAGCTAAAAAATCCTAAA
ACCTTCATTTTCATCGATACAAGTGAAAATGTATCGATACAATATGAAATGTATCAATACATTAT
GTA
Found at i:1873441 original size:13 final size:13
Alignment explanation
Indices: 1873423--1873448 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
1873413 ACAATTCAGG
1873423 ATGTATCGATACA
1 ATGTATCGATACA
1873436 ATGTATCGATACA
1 ATGTATCGATACA
1873449 TTGTCCCAAG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:1873523 original size:20 final size:20
Alignment explanation
Indices: 1873498--1873552 Score: 76
Period size: 19 Copynumber: 2.8 Consensus size: 20
1873488 CTGCCAATCT
*
1873498 CATGTATCGATACAATTGTC
1 CATGTATCGATACAATTGAC
* *
1873518 CATGTATCGATAC-AGTGAG
1 CATGTATCGATACAATTGAC
1873537 CATGTATCGATACAAT
1 CATGTATCGATACAAT
1873553 GTATCGATCC
Statistics
Matches: 30, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
19 16 0.53
20 14 0.47
ACGTcount: A:0.33, C:0.18, G:0.18, T:0.31
Consensus pattern (20 bp):
CATGTATCGATACAATTGAC
Found at i:1873556 original size:13 final size:13
Alignment explanation
Indices: 1873538--1873597 Score: 60
Period size: 13 Copynumber: 5.1 Consensus size: 13
1873528 TACAGTGAGC
1873538 ATGTATCGATACA
1 ATGTATCGATACA
*
1873551 ATGTATCGATCCA
1 ATGTATCGATACA
*
1873564 A---AGC-AT--A
1 ATGTATCGATACA
1873571 ATGTATCGATACA
1 ATGTATCGATACA
1873584 ATGTATCGATACA
1 ATGTATCGATACA
1873597 A
1 A
1873598 AGCATAATGT
Statistics
Matches: 38, Mismatches: 3, Indels: 12
0.72 0.06 0.23
Matches are distributed among these distances:
7 2 0.05
9 2 0.05
10 4 0.11
11 2 0.05
13 28 0.74
ACGTcount: A:0.40, C:0.17, G:0.15, T:0.28
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:1873580 original size:33 final size:33
Alignment explanation
Indices: 1873538--1873615 Score: 147
Period size: 33 Copynumber: 2.4 Consensus size: 33
1873528 TACAGTGAGC
*
1873538 ATGTATCGATACAATGTATCGATCCAAAGCATA
1 ATGTATCGATACAATGTATCGATACAAAGCATA
1873571 ATGTATCGATACAATGTATCGATACAAAGCATA
1 ATGTATCGATACAATGTATCGATACAAAGCATA
1873604 ATGTATCGATAC
1 ATGTATCGATAC
1873616 TTCTGGGAGT
Statistics
Matches: 44, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
33 44 1.00
ACGTcount: A:0.40, C:0.17, G:0.15, T:0.28
Consensus pattern (33 bp):
ATGTATCGATACAATGTATCGATACAAAGCATA
Found at i:1873614 original size:20 final size:20
Alignment explanation
Indices: 1873550--1873615 Score: 74
Period size: 20 Copynumber: 3.6 Consensus size: 20
1873540 GTATCGATAC
*
1873550 AATGTATCGATCCAAAGCAT
1 AATGTATCGATACAAAGCAT
1873570 AATGTATCGAT----A-C--
1 AATGTATCGATACAAAGCAT
1873583 AATGTATCGATACAAAGCAT
1 AATGTATCGATACAAAGCAT
1873603 AATGTATCGATAC
1 AATGTATCGATAC
1873616 TTCTGGGAGT
Statistics
Matches: 39, Mismatches: 0, Indels: 14
0.74 0.00 0.26
Matches are distributed among these distances:
13 11 0.28
15 1 0.03
16 1 0.03
17 1 0.03
18 1 0.03
20 24 0.62
ACGTcount: A:0.41, C:0.17, G:0.15, T:0.27
Consensus pattern (20 bp):
AATGTATCGATACAAAGCAT
Found at i:1875467 original size:28 final size:27
Alignment explanation
Indices: 1875436--1875514 Score: 70
Period size: 28 Copynumber: 2.9 Consensus size: 27
1875426 CTCTTCATTG
1875436 ATTTCTCTTCCTTTGATATTTCTTGCTT
1 ATTTCTCTTCC-TTGATATTTCTTGCTT
* * *
1875464 ATTT-TGTTTCCCTTCATATTTCTTGTTT
1 ATTTCT-CTT-CCTTGATATTTCTTGCTT
* * *
1875492 ATTTCACTTTCTTGATCTTTCTT
1 ATTTCTCTTCCTTGATATTTCTT
1875515 ATTTATTAAT
Statistics
Matches: 40, Mismatches: 8, Indels: 7
0.73 0.15 0.13
Matches are distributed among these distances:
27 12 0.30
28 26 0.65
29 2 0.05
ACGTcount: A:0.11, C:0.20, G:0.06, T:0.62
Consensus pattern (27 bp):
ATTTCTCTTCCTTGATATTTCTTGCTT
Found at i:1877453 original size:12 final size:12
Alignment explanation
Indices: 1877436--1877467 Score: 55
Period size: 12 Copynumber: 2.6 Consensus size: 12
1877426 AATTTAGCAT
1877436 ATAGAGATCAAA
1 ATAGAGATCAAA
1877448 ATAGAGATCAAA
1 ATAGAGATCAAA
1877460 ATAAGAGA
1 AT-AGAGA
1877468 GTTAGTGCTT
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
12 14 0.74
13 5 0.26
ACGTcount: A:0.59, C:0.06, G:0.19, T:0.16
Consensus pattern (12 bp):
ATAGAGATCAAA
Found at i:1878731 original size:13 final size:13
Alignment explanation
Indices: 1878713--1878737 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
1878703 ATATTGCTTA
1878713 GTATCGATACATT
1 GTATCGATACATT
1878726 GTATCGATACAT
1 GTATCGATACAT
1878738 ATTCTTGGTA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
GTATCGATACATT
Found at i:1878754 original size:32 final size:33
Alignment explanation
Indices: 1878692--1878756 Score: 105
Period size: 32 Copynumber: 2.0 Consensus size: 33
1878682 CACACCTAGA
1878692 TGTATCAATACATATTGCTTAGTATCGATACAT
1 TGTATCAATACATATTGCTTAGTATCGATACAT
* *
1878725 TGTATCGATACATATT-CTTGGTATCGATACAT
1 TGTATCAATACATATTGCTTAGTATCGATACAT
1878757 ATTGAGTTAA
Statistics
Matches: 30, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
32 15 0.50
33 15 0.50
ACGTcount: A:0.31, C:0.15, G:0.14, T:0.40
Consensus pattern (33 bp):
TGTATCAATACATATTGCTTAGTATCGATACAT
Found at i:1878821 original size:13 final size:13
Alignment explanation
Indices: 1878803--1878829 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
1878793 AAAACTCACT
1878803 TTGTATCGATACA
1 TTGTATCGATACA
1878816 TTGTATCGATACA
1 TTGTATCGATACA
1878829 T
1 T
1878830 GATGAATTGT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.30, C:0.15, G:0.15, T:0.41
Consensus pattern (13 bp):
TTGTATCGATACA
Found at i:1880164 original size:13 final size:13
Alignment explanation
Indices: 1880146--1880171 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
1880136 ATTTTTTTGG
1880146 TGTATCGATACAT
1 TGTATCGATACAT
1880159 TGTATCGATACAT
1 TGTATCGATACAT
1880172 ACTTGGTGTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:1882275 original size:21 final size:20
Alignment explanation
Indices: 1882246--1882288 Score: 59
Period size: 20 Copynumber: 2.1 Consensus size: 20
1882236 AGCTAGTGTG
1882246 GGGACTGCCCGGTTGCGACCT
1 GGGACTG-CCGGTTGCGACCT
* *
1882267 GGGAGTGCCGGTTGTGACCT
1 GGGACTGCCGGTTGCGACCT
1882287 GG
1 GG
1882289 TGGTGCTGCC
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
20 14 0.70
21 6 0.30
ACGTcount: A:0.09, C:0.26, G:0.44, T:0.21
Consensus pattern (20 bp):
GGGACTGCCGGTTGCGACCT
Found at i:1882747 original size:13 final size:13
Alignment explanation
Indices: 1882729--1882767 Score: 69
Period size: 13 Copynumber: 3.0 Consensus size: 13
1882719 ATAATCCCCC
*
1882729 TGTATCGATACAG
1 TGTATCGATACAA
1882742 TGTATCGATACAA
1 TGTATCGATACAA
1882755 TGTATCGATACAA
1 TGTATCGATACAA
1882768 AGAAAAATGT
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
13 25 1.00
ACGTcount: A:0.36, C:0.15, G:0.18, T:0.31
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:1882783 original size:46 final size:46
Alignment explanation
Indices: 1882729--1882832 Score: 129
Period size: 46 Copynumber: 2.3 Consensus size: 46
1882719 ATAATCCCCC
*
1882729 TGTATCGATACAGTGTATCGATACA-ATGTATCGATACAAAGAAAAA
1 TGTATCGATACAGTGAAT-GATACAGATGTATCGATACAAAGAAAAA
* ** * * *
1882775 TGTATCGATACATTGAATTTTCCAGATGTATCGATACACAGAAACA
1 TGTATCGATACAGTGAATGATACAGATGTATCGATACAAAGAAAAA
1882821 TGTATCGATACA
1 TGTATCGATACA
1882833 TTTTGGACAT
Statistics
Matches: 50, Mismatches: 7, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
45 3 0.06
46 47 0.94
ACGTcount: A:0.39, C:0.15, G:0.16, T:0.29
Consensus pattern (46 bp):
TGTATCGATACAGTGAATGATACAGATGTATCGATACAAAGAAAAA
Found at i:1884850 original size:15 final size:15
Alignment explanation
Indices: 1884830--1884870 Score: 55
Period size: 15 Copynumber: 2.7 Consensus size: 15
1884820 GTTCATCGAT
1884830 TTCATTTGGAGCTTC
1 TTCATTTGGAGCTTC
*
1884845 TTCATTTTGAGCTTC
1 TTCATTTGGAGCTTC
*
1884860 CTCAATTTGGA
1 TTC-ATTTGGA
1884871 CATTTTTATC
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
15 16 0.73
16 6 0.27
ACGTcount: A:0.17, C:0.20, G:0.17, T:0.46
Consensus pattern (15 bp):
TTCATTTGGAGCTTC
Found at i:1886700 original size:21 final size:21
Alignment explanation
Indices: 1886671--1886715 Score: 56
Period size: 22 Copynumber: 2.1 Consensus size: 21
1886661 AAGTTTTTAT
*
1886671 TTTTCTTAGCTAA-TTCATTA
1 TTTTCTTAGCCAAGTTCATTA
*
1886691 TTTTCATTAGCCAAGTTCTTTA
1 TTTTC-TTAGCCAAGTTCATTA
1886713 TTT
1 TTT
1886716 CAACTTGCAA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
20 5 0.24
21 7 0.33
22 9 0.43
ACGTcount: A:0.22, C:0.16, G:0.07, T:0.56
Consensus pattern (21 bp):
TTTTCTTAGCCAAGTTCATTA
Found at i:1886715 original size:22 final size:21
Alignment explanation
Indices: 1886660--1886715 Score: 62
Period size: 21 Copynumber: 2.7 Consensus size: 21
1886650 ATGAATCATG
1886660 CAAGTT-TTTATTTTTCTTAGC
1 CAAGTTCTTTA-TTTTCTTAGC
* *
1886681 TAA-TTCATTATTTTCATTAGC
1 CAAGTTCTTTATTTTC-TTAGC
1886702 CAAGTTCTTTATTT
1 CAAGTTCTTTATTT
1886716 CAACTTGCAA
Statistics
Matches: 28, Mismatches: 4, Indels: 5
0.76 0.11 0.14
Matches are distributed among these distances:
20 7 0.25
21 12 0.43
22 9 0.32
ACGTcount: A:0.23, C:0.14, G:0.07, T:0.55
Consensus pattern (21 bp):
CAAGTTCTTTATTTTCTTAGC
Found at i:1888964 original size:13 final size:13
Alignment explanation
Indices: 1888946--1888971 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
1888936 ATTTTTTTGG
1888946 TGTATCGATACAT
1 TGTATCGATACAT
1888959 TGTATCGATACAT
1 TGTATCGATACAT
1888972 ACTTGGTGTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:1890439 original size:3 final size:3
Alignment explanation
Indices: 1890431--1890464 Score: 50
Period size: 3 Copynumber: 11.3 Consensus size: 3
1890421 TCAACCATCA
* *
1890431 ATG ATG ATG AAG AAG ATG ATG ATG ATG ATG ATG A
1 ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG A
1890465 AGTTGACTCA
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
3 29 1.00
ACGTcount: A:0.41, C:0.00, G:0.32, T:0.26
Consensus pattern (3 bp):
ATG
Found at i:1892864 original size:16 final size:16
Alignment explanation
Indices: 1892840--1892870 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
1892830 AAGGGCTTTC
*
1892840 AAAGTTTTTAATTGAA
1 AAAGGTTTTAATTGAA
1892856 AAAGGTTTTAATTGA
1 AAAGGTTTTAATTGA
1892871 GGAAATGTTG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.42, C:0.00, G:0.16, T:0.42
Consensus pattern (16 bp):
AAAGGTTTTAATTGAA
Found at i:1894305 original size:13 final size:13
Alignment explanation
Indices: 1894287--1894314 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
1894277 ACAAAGTTCT
1894287 TTGTATCGATACA
1 TTGTATCGATACA
1894300 TTGTATCGATACA
1 TTGTATCGATACA
1894313 TT
1 TT
1894315 ACAAAATGTA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.29, C:0.14, G:0.14, T:0.43
Consensus pattern (13 bp):
TTGTATCGATACA
Found at i:1895663 original size:13 final size:13
Alignment explanation
Indices: 1895645--1895671 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
1895635 ACATTATGCT
1895645 TTGTATCGATACA
1 TTGTATCGATACA
1895658 TTGTATCGATACA
1 TTGTATCGATACA
1895671 T
1 T
1895672 GATCATTGTA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.30, C:0.15, G:0.15, T:0.41
Consensus pattern (13 bp):
TTGTATCGATACA
Found at i:1895668 original size:33 final size:32
Alignment explanation
Indices: 1895626--1895690 Score: 103
Period size: 32 Copynumber: 2.0 Consensus size: 32
1895616 CACACCTAGA
* *
1895626 TGTATCGATACATTATGCTTTGTATCGATACAT
1 TGTATCGATACATGAT-CATTGTATCGATACAT
1895659 TGTATCGATACATGATCATTGTATCGATACAT
1 TGTATCGATACATGATCATTGTATCGATACAT
1895691 GGACAATTGT
Statistics
Matches: 30, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
32 15 0.50
33 15 0.50
ACGTcount: A:0.29, C:0.15, G:0.15, T:0.40
Consensus pattern (32 bp):
TGTATCGATACATGATCATTGTATCGATACAT
Found at i:1895680 original size:19 final size:18
Alignment explanation
Indices: 1895655--1895712 Score: 89
Period size: 19 Copynumber: 3.1 Consensus size: 18
1895645 TTGTATCGAT
1895655 ACATTGTATCGATACATG
1 ACATTGTATCGATACATG
1895673 ATCATTGTATCGATACATGG
1 A-CATTGTATCGATACAT-G
1895693 ACAATTGTATCGATACATG
1 AC-ATTGTATCGATACATG
1895712 A
1 A
1895713 AACTGGCAGT
Statistics
Matches: 37, Mismatches: 0, Indels: 5
0.88 0.00 0.12
Matches are distributed among these distances:
18 1 0.03
19 19 0.51
20 17 0.46
ACGTcount: A:0.34, C:0.16, G:0.17, T:0.33
Consensus pattern (18 bp):
ACATTGTATCGATACATG
Found at i:1895701 original size:20 final size:20
Alignment explanation
Indices: 1895656--1895711 Score: 89
Period size: 20 Copynumber: 2.9 Consensus size: 20
1895646 TGTATCGATA
1895656 CATTGTATCGATACAT-GAT
1 CATTGTATCGATACATGGAT
1895675 CATTGTATCGATACATGGA-
1 CATTGTATCGATACATGGAT
1895694 CAATTGTATCGATACATG
1 C-ATTGTATCGATACATG
1895712 AAACTGGCAG
Statistics
Matches: 35, Mismatches: 0, Indels: 3
0.92 0.00 0.08
Matches are distributed among these distances:
19 17 0.49
20 18 0.51
ACGTcount: A:0.32, C:0.16, G:0.18, T:0.34
Consensus pattern (20 bp):
CATTGTATCGATACATGGAT
Found at i:1897347 original size:18 final size:18
Alignment explanation
Indices: 1897320--1897355 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
1897310 GTCAACCATC
1897320 AATGACGATGAAGATGGT
1 AATGACGATGAAGATGGT
* *
1897338 AATGATGATGATGATGGT
1 AATGACGATGAAGATGGT
1897356 GACTCGGATG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.36, C:0.03, G:0.33, T:0.28
Consensus pattern (18 bp):
AATGACGATGAAGATGGT
Found at i:1899819 original size:15 final size:17
Alignment explanation
Indices: 1899788--1899819 Score: 50
Period size: 16 Copynumber: 2.0 Consensus size: 17
1899778 AGCAAGATGA
1899788 AAGCATCCAAAATGAAG
1 AAGCATCCAAAATGAAG
1899805 AAGC-TCCAAAA-GAAG
1 AAGCATCCAAAATGAAG
1899820 TTGATGAACA
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
15 4 0.27
16 7 0.47
17 4 0.27
ACGTcount: A:0.53, C:0.19, G:0.19, T:0.09
Consensus pattern (17 bp):
AAGCATCCAAAATGAAG
Found at i:1901840 original size:20 final size:20
Alignment explanation
Indices: 1901815--1901869 Score: 110
Period size: 20 Copynumber: 2.8 Consensus size: 20
1901805 AATTTTCCAA
1901815 GATGTATCGATACATTGAAG
1 GATGTATCGATACATTGAAG
1901835 GATGTATCGATACATTGAAG
1 GATGTATCGATACATTGAAG
1901855 GATGTATCGATACAT
1 GATGTATCGATACAT
1901870 CTAGAAAACC
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 35 1.00
ACGTcount: A:0.35, C:0.11, G:0.24, T:0.31
Consensus pattern (20 bp):
GATGTATCGATACATTGAAG
Found at i:1901921 original size:13 final size:13
Alignment explanation
Indices: 1901903--1901929 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
1901893 ACAATATTCC
1901903 TTGTATCGATACA
1 TTGTATCGATACA
1901916 TTGTATCGATACA
1 TTGTATCGATACA
1901929 T
1 T
1901930 GAGTTACTAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.30, C:0.15, G:0.15, T:0.41
Consensus pattern (13 bp):
TTGTATCGATACA
Found at i:1902063 original size:21 final size:22
Alignment explanation
Indices: 1902050--1902091 Score: 63
Period size: 22 Copynumber: 2.0 Consensus size: 22
1902040 CAAATTTCTT
1902050 ATTTTTCACTTCAAAATACTTC
1 ATTTTTCACTTCAAAATACTTC
1902072 ATTTTTCA--TCAAAAT-CTTC
1 ATTTTTCACTTCAAAATACTTC
1902091 A
1 A
1902092 ACAAAAATGG
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
19 5 0.25
20 7 0.35
22 8 0.40
ACGTcount: A:0.33, C:0.21, G:0.00, T:0.45
Consensus pattern (22 bp):
ATTTTTCACTTCAAAATACTTC
Found at i:1902085 original size:20 final size:20
Alignment explanation
Indices: 1902046--1902091 Score: 60
Period size: 20 Copynumber: 2.3 Consensus size: 20
1902036 TTTTCAAATT
1902046 TCTT-ATTTTTCACTTCAAAA
1 TCTTCATTTTTCAC-TCAAAA
1902066 TACTTCATTTTTCA-TCAAAA
1 T-CTTCATTTTTCACTCAAAA
1902086 TCTTCA
1 TCTTCA
1902092 ACAAAAATGG
Statistics
Matches: 24, Mismatches: 0, Indels: 5
0.83 0.00 0.17
Matches are distributed among these distances:
19 5 0.21
20 8 0.33
21 3 0.12
22 8 0.33
ACGTcount: A:0.30, C:0.22, G:0.00, T:0.48
Consensus pattern (20 bp):
TCTTCATTTTTCACTCAAAA
Found at i:1903843 original size:28 final size:29
Alignment explanation
Indices: 1903783--1903863 Score: 119
Period size: 28 Copynumber: 2.8 Consensus size: 29
1903773 AATAAATTTT
* *
1903783 TTATCTAGGGGGAGAAAATCTTTTGAATCGA
1 TTATCAAGGGGGAG-AAAT-TTTTGAACCGA
1903814 TTATCAAGGGGGAGAAATTTTT-AACCGA
1 TTATCAAGGGGGAGAAATTTTTGAACCGA
1903842 TTATCAAGGGGGAGAAATTTTT
1 TTATCAAGGGGGAGAAATTTTT
1903864 TATGAAAATA
Statistics
Matches: 48, Mismatches: 2, Indels: 3
0.91 0.04 0.06
Matches are distributed among these distances:
28 27 0.56
29 4 0.08
30 4 0.08
31 13 0.27
ACGTcount: A:0.33, C:0.09, G:0.26, T:0.32
Consensus pattern (29 bp):
TTATCAAGGGGGAGAAATTTTTGAACCGA
Found at i:1904571 original size:13 final size:13
Alignment explanation
Indices: 1904553--1904577 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
1904543 ACATGGACAT
1904553 TGTATCGATACAA
1 TGTATCGATACAA
1904566 TGTATCGATACA
1 TGTATCGATACA
1904578 TGATGAATTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:1904593 original size:33 final size:32
Alignment explanation
Indices: 1904534--1904597 Score: 103
Period size: 32 Copynumber: 2.0 Consensus size: 32
1904524 TACCACTGTT
1904534 TGTATCGATACATGGACATTGTATCGATACAA
1 TGTATCGATACATGGACATTGTATCGATACAA
1904566 TGTATCGATACATGATGA-ATTGTATCGATACA
1 TGTATCGATACATG--GACATTGTATCGATACA
1904598 TTGCTTCTAA
Statistics
Matches: 30, Mismatches: 0, Indels: 3
0.91 0.00 0.09
Matches are distributed among these distances:
32 14 0.47
33 14 0.47
34 2 0.07
ACGTcount: A:0.34, C:0.14, G:0.19, T:0.33
Consensus pattern (32 bp):
TGTATCGATACATGGACATTGTATCGATACAA
Found at i:1906965 original size:19 final size:20
Alignment explanation
Indices: 1906918--1906972 Score: 67
Period size: 19 Copynumber: 2.8 Consensus size: 20
1906908 ACACCTAGAT
*
1906918 GTATTGATACATATTGTTTA
1 GTATTGATACATATTGCTTA
* *
1906938 GTATCGATACATATT-CTTG
1 GTATTGATACATATTGCTTA
*
1906957 GTATTGATACAAATTG
1 GTATTGATACATATTG
1906973 AGTTAAATTG
Statistics
Matches: 29, Mismatches: 5, Indels: 2
0.81 0.14 0.06
Matches are distributed among these distances:
19 15 0.52
20 14 0.48
ACGTcount: A:0.31, C:0.09, G:0.16, T:0.44
Consensus pattern (20 bp):
GTATTGATACATATTGCTTA
Found at i:1907033 original size:13 final size:13
Alignment explanation
Indices: 1907015--1907074 Score: 78
Period size: 13 Copynumber: 5.1 Consensus size: 13
1907005 AAAACTCACT
1907015 TTGTATCGATACA
1 TTGTATCGATACA
1907028 TTGTATCGATACA
1 TTGTATCGATACA
1907041 -TG-AT-G--A-A
1 TTGTATCGATACA
1907048 TTGTATCGATACA
1 TTGTATCGATACA
1907061 TTGTATCGATACA
1 TTGTATCGATACA
1907074 T
1 T
1907075 GATGAATTGT
Statistics
Matches: 41, Mismatches: 0, Indels: 12
0.77 0.00 0.23
Matches are distributed among these distances:
7 1 0.02
8 3 0.07
9 2 0.05
10 2 0.05
11 2 0.05
12 3 0.07
13 28 0.68
ACGTcount: A:0.32, C:0.13, G:0.17, T:0.38
Consensus pattern (13 bp):
TTGTATCGATACA
Found at i:1907052 original size:20 final size:20
Alignment explanation
Indices: 1907027--1907094 Score: 87
Period size: 20 Copynumber: 3.8 Consensus size: 20
1907017 GTATCGATAC
1907027 ATTGTATCGATACATGATGA
1 ATTGTATCGATACATGATGA
1907047 ATTGTATCGATAC-------
1 ATTGTATCGATACATGATGA
1907060 ATTGTATCGATACATGATGA
1 ATTGTATCGATACATGATGA
1907080 ATTGTATCGATACAT
1 ATTGTATCGATACAT
1907095 AGTGCGTTGA
Statistics
Matches: 41, Mismatches: 0, Indels: 14
0.75 0.00 0.25
Matches are distributed among these distances:
13 13 0.32
20 28 0.68
ACGTcount: A:0.34, C:0.12, G:0.18, T:0.37
Consensus pattern (20 bp):
ATTGTATCGATACATGATGA
Found at i:1907057 original size:33 final size:33
Alignment explanation
Indices: 1907015--1907094 Score: 160
Period size: 33 Copynumber: 2.4 Consensus size: 33
1907005 AAAACTCACT
1907015 TTGTATCGATACATTGTATCGATACATGATGAA
1 TTGTATCGATACATTGTATCGATACATGATGAA
1907048 TTGTATCGATACATTGTATCGATACATGATGAA
1 TTGTATCGATACATTGTATCGATACATGATGAA
1907081 TTGTATCGATACAT
1 TTGTATCGATACAT
1907095 AGTGCGTTGA
Statistics
Matches: 47, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 47 1.00
ACGTcount: A:0.33, C:0.12, G:0.17, T:0.38
Consensus pattern (33 bp):
TTGTATCGATACATTGTATCGATACATGATGAA
Found at i:1909254 original size:158 final size:158
Alignment explanation
Indices: 1909010--1910201 Score: 663
Period size: 159 Copynumber: 7.5 Consensus size: 158
1909000 CATTTTAAGG
* * * ** * *
1909010 AAAATAGG-GCAAAGAAAAGCTTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAG
1 AAAATAGGTGGAAAGAAAAGCTTTTCTTGCAAAACCAAAGCATCAATATCATGTATCCTAATGAG
* * *
1909074 GAGAATATGTTT-TAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCTTTGTTTGAC
66 AAGAATATGTTTATGGTGCCTAATCACAAAATGAATGAAGATCATTA-TAGAATCTTTGTTTGTC
* *
1909138 TCATTTGAGGCACAAACTTACATTTTACA
130 TCATTTAAGGCACAAACTTAGATTTTACA
* * * * * * * *
1909167 AAAATTGGTGGGAAG-AAAGCCTTTCTTGCGAAACCAAAGCATTAATATCGTCTATCCTAACGAG
1 AAAATAGGTGGAAAGAAAAGCTTTTCTTGCAAAACCAAAGCATCAATATCATGTATCCTAATGAG
* * * ** * * * *
1909231 AAGACTACGTTTATGGTGCCTAATC-CTAAAAAGAATGGGGATTAGTAT-GACTATTCATGTTTG
66 AAGAATATGTTTATGGTGCCTAATCAC-AAAATGAATGAAGATCATTATAGAATCTT--TGTTTG
* * *
1909294 TCTTATTTAAGGGAGCAAACTTTGATTTTATCA
128 TCTCATTTAAGGCA-CAAACTTAGATTTTA-CA
* * * *
1909327 AAAA-AGATGGAAAGAAAAGCTTTTCTTGCGACATCAAAGCATCAATATCATGTATCCTAATGA-
1 AAAATAGGTGGAAAGAAAAGCTTTTCTTGCAAAACCAAAGCATCAATATCATGTATCCTAATGAG
* * * * ** * ** ** *
1909390 AGGGAATGTGTTCT-TGGTTCTTAATCTTGAAAA-GAATGGAGATTGTTATGAGAATCAGTGCTT
66 A-AGAATATGTT-TATGGTGCCTAATC-ACAAAATGAATGAAGATCATTAT-AGAATCTTTGTTT
* ** * * *
1909453 GTCAT-ATTTAAGGGATGAATTTTGATTTTAATA
127 GTC-TCATTTAAGGCACAAACTTAGATTTT-ACA
* * * * ** * * *
1909486 AAAATAGG-GCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAAAGAG
1 AAAATAGGTGGAAAGAAAAGCTTTTCTTGCAAAACCAAAGCATCAATATCATGTATCCTAATGAG
* * * *
1909550 GAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAAT-TCATGTTTGT
66 AAGAATATGTTTATGGTGCCTAATCACAAAATGAATGAAGATCATTA-TAGAATCT-TTGTTTGT
* * *
1909614 CTCATTTGAGGCACGAACTTAGACTTTACA
129 CTCATTTAAGGCACAAACTTAGATTTTACA
* * * * * *
1909644 AAAATTGGTGGGAAG-AAAGTTTTTCTTGCAAAACCAAAGCATCAACATCATGTATCCTTATGAT
1 AAAATAGGTGGAAAGAAAAGCTTTTCTTGCAAAACCAAAGCATCAATATCATGTATCCTAATGAG
* * * ** ** * * * *
1909708 AAGACTAAGTTTATGGGGCCTAATCTTGAAAA-GAATGGGGATTAGTAT-GACTATTCATGTTTG
66 AAGAATATGTTTATGGTGCCTAATC-ACAAAATGAATGAAGATCATTATAGAATCTT--TGTTTG
* * * *
1909771 TCTTATTAAAGAG-ACAAACTTTGATTCTATCA
128 TCTCATTTAAG-GCACAAACTTAGATTTTA-CA
* * * * *
1909803 AAAA-CGGTTGAAAGAAAAGCTTTTCTTGCGATACCAAAGCATCAATGTCATGTATCCTAAT-A-
1 AAAATAGGTGGAAAGAAAAGCTTTTCTTGCAAAACCAAAGCATCAATATCATGTATCCTAATGAG
* * * ** * * * * ** *
1909865 AAGGGAATGTGTTCT-TGGTTCCCAATCTTGATAA-GAATGGAG-GCTGTTATGAGAATCGATGC
66 AA--GAATATGTT-TATGGTGCCTAATC-ACAAAATGAATGAAGATC-ATTAT-AGAATCTTTGT
* ** * * *
1909927 TTGTCAT-ATTTAAGGGATGAATTTTGATTTTAAA
125 TTGTC-TCATTTAAGGCACAAACTTAGATTTTACA
* * * * ** * * * *
1909961 GAAAATCA--AGCAAAGAAAAGATTTTCATGCAAAAGAAAATCATCAATATTATTTATCCTAATA
1 -AAAAT-AGGTGGAAAGAAAAGCTTTTCTTGCAAAACCAAAGCATCAATATCATGTATCCTAATG
* * * * **
1910024 AGGAGAATGTGTTCATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTG
64 AGAAGAATATGTTTATGGTGCCTAATCACAAAATGAATGAAGATCATTA-TAGAATCTTTGTTTG
* * * * *
1910089 ACTCGTTTGAGGCACGAACTTAGACTTTACA
128 TCTCATTTAAGGCACAAACTTAGATTTTACA
* * * ** *
1910120 AAAATTGGTGGGAAG-AAAGCCTTTCTTGTGAAACCAAAGCATCAATATCATCTATCCTAATGAG
1 AAAATAGGTGGAAAGAAAAGCTTTTCTTGCAAAACCAAAGCATCAATATCATGTATCCTAATGAG
*
1910184 AAGACTATGTTTATGGTG
66 AAGAATATGTTTATGGTG
1910202 TGATGACAAC
Statistics
Matches: 769, Mismatches: 215, Indels: 101
0.71 0.20 0.09
Matches are distributed among these distances:
156 8 0.01
157 60 0.08
158 225 0.29
159 361 0.47
160 102 0.13
161 10 0.01
162 3 0.00
ACGTcount: A:0.37, C:0.14, G:0.18, T:0.31
Consensus pattern (158 bp):
AAAATAGGTGGAAAGAAAAGCTTTTCTTGCAAAACCAAAGCATCAATATCATGTATCCTAATGAG
AAGAATATGTTTATGGTGCCTAATCACAAAATGAATGAAGATCATTATAGAATCTTTGTTTGTCT
CATTTAAGGCACAAACTTAGATTTTACA
Found at i:1909871 original size:476 final size:476
Alignment explanation
Indices: 1908964--1910199 Score: 1926
Period size: 476 Copynumber: 2.6 Consensus size: 476
1908954 TTGCATGCCA
* * * *
1908964 AGAATCGATGTTTGCCATATTTAAGGGATGAATTTTCATTTTAAGGAAAATAGGGCAAAGAAAAG
1 AGAATCGATGCTTGTCATATTTAAGGGATGAATTTTGATTTTAA-AAAAATAGGGCAAAGAAAAG
* * *
1909029 CTTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATATGTTT-TAGTGCC
65 ATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAAAGAGGAGAATGTGTTTATAGTGCC
* *
1909093 TAATCACAAAATGAATGAAGATCATTACTAGAA-TCTTTGTTTGACTCATTTGAGGCACAAACTT
130 TAATCACAAAATGAATGAAGATCATTACTAGAATTC-ATGTTTGACTCATTTGAGGCACGAACTT
* * * *
1909157 ACATTTTACAAAAATTGGTGGGAAGAAAGCCTTTCTTGCGAAACCAAAGCATTAATATCGTCTAT
194 AGACTTTACAAAAATTGGTGGGAAGAAAGCCTTTCTTGCGAAACCAAAGCATCAATATCATCTAT
* * *
1909222 CCTAACGAGAAGACTACGTTTATGGTGCCTAATCCTAAAAAGAATGGGGATTAGTATGACTATTC
259 CCTAATGAGAAGACTAAGTTTATGGGGCCTAATCCTAAAAAGAATGGGGATTAGTATGACTATTC
* * *
1909287 ATGTTTGTCTTATTTAAGGGAGCAAACTTTGATTTTATCAAAAAAGATGGAAAGAAAAGCTTTTC
324 ATGTTTGTCTTATTAAAGAGAGCAAACTTTGATTCTATCAAAAAAGATGGAAAGAAAAGCTTTTC
* * **
1909352 TTGCGACATCAAAGCATCAATATCATGTATCCTAATGAAGGGAATGTGTTCTTGGTTCTTAATCT
389 TTGCGACACCAAAGCATCAATATCATGTATCCTAATAAAGGGAATGTGTTCTTGGTTCCCAATCT
*
1909417 TGAAAAGAATGGAGATTGTTATG
454 TGAAAAGAATGGAGACTGTTATG
1909440 AGAATC-AGTGCTTGTCATATTTAAGGGATGAATTTTGATTTTAATAAAAATAGGGCAAAGAAAA
1 AGAATCGA-TGCTTGTCATATTTAAGGGATGAATTTTGATTTTAA-AAAAATAGGGCAAAGAAAA
1909504 GATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAAAGAGGAGAATGTGTTTATAGTGC
64 GATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAAAGAGGAGAATGTGTTTATAGTGC
*
1909569 CTAATCACAAAATGAATGAAGATCATTACTAGAATTCATGTTTGTCTCATTTGAGGCACGAACTT
129 CTAATCACAAAATGAATGAAGATCATTACTAGAATTCATGTTTGACTCATTTGAGGCACGAACTT
** * * *
1909634 AGACTTTACAAAAATTGGTGGGAAGAAAGTTTTTCTTGCAAAACCAAAGCATCAACATCATGTAT
194 AGACTTTACAAAAATTGGTGGGAAGAAAGCCTTTCTTGCGAAACCAAAGCATCAATATCATCTAT
* * * *
1909699 CCTTATGATAAGACTAAGTTTATGGGGCCTAATCTTGAAAAGAATGGGGATTAGTATGACTATTC
259 CCTAATGAGAAGACTAAGTTTATGGGGCCTAATCCTAAAAAGAATGGGGATTAGTATGACTATTC
* * *
1909764 ATGTTTGTCTTATTAAAGAGA-CAAACTTTGATTCTATCAAAAACGGTTGAAAGAAAAGCTTTTC
324 ATGTTTGTCTTATTAAAGAGAGCAAACTTTGATTCTATCAAAAAAGATGGAAAGAAAAGCTTTTC
* *
1909828 TTGCGATACCAAAGCATCAATGTCATGTATCCTAATAAAGGGAATGTGTTCTTGGTTCCCAATCT
389 TTGCGACACCAAAGCATCAATATCATGTATCCTAATAAAGGGAATGTGTTCTTGGTTCCCAATCT
* *
1909893 TGATAAGAATGGAGGCTGTTATG
454 TGAAAAGAATGGAGACTGTTATG
*
1909916 AGAATCGATGCTTGTCATATTTAAGGGATGAATTTTGATTTTAAAGAAAATCA-AGCAAAGAAAA
1 AGAATCGATGCTTGTCATATTTAAGGGATGAATTTTGATTTTAAA-AAAAT-AGGGCAAAGAAAA
* * *
1909980 GATTTTCATGCAAAAGAAAATCATCAATATTATTTATCCTAATA-AGGAGAATGTGTTCATAGTG
64 GATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAA-AGAGGAGAATGTGTTTATAGTG
* *
1910044 CCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGACTCGTTTGAGGCACGAACT
128 CCTAATCACAAAATGAATGAAGATCATTACTAGAATTCATGTTTGACTCATTTGAGGCACGAACT
*
1910109 TAGACTTTACAAAAATTGGTGGGAAGAAAGCCTTTCTTGTGAAACCAAAGCATCAATATCATCTA
193 TAGACTTTACAAAAATTGGTGGGAAGAAAGCCTTTCTTGCGAAACCAAAGCATCAATATCATCTA
*
1910174 TCCTAATGAGAAGACTATGTTTATGG
258 TCCTAATGAGAAGACTAAGTTTATGG
1910200 TGTGATGACA
Statistics
Matches: 695, Mismatches: 58, Indels: 14
0.91 0.08 0.02
Matches are distributed among these distances:
475 2 0.00
476 490 0.71
477 201 0.29
478 2 0.00
ACGTcount: A:0.37, C:0.14, G:0.19, T:0.31
Consensus pattern (476 bp):
AGAATCGATGCTTGTCATATTTAAGGGATGAATTTTGATTTTAAAAAAATAGGGCAAAGAAAAGA
TTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAAAGAGGAGAATGTGTTTATAGTGCCT
AATCACAAAATGAATGAAGATCATTACTAGAATTCATGTTTGACTCATTTGAGGCACGAACTTAG
ACTTTACAAAAATTGGTGGGAAGAAAGCCTTTCTTGCGAAACCAAAGCATCAATATCATCTATCC
TAATGAGAAGACTAAGTTTATGGGGCCTAATCCTAAAAAGAATGGGGATTAGTATGACTATTCAT
GTTTGTCTTATTAAAGAGAGCAAACTTTGATTCTATCAAAAAAGATGGAAAGAAAAGCTTTTCTT
GCGACACCAAAGCATCAATATCATGTATCCTAATAAAGGGAATGTGTTCTTGGTTCCCAATCTTG
AAAAGAATGGAGACTGTTATG
Found at i:1913854 original size:13 final size:12
Alignment explanation
Indices: 1913783--1913851 Score: 67
Period size: 13 Copynumber: 6.0 Consensus size: 12
1913773 AACCCACTTA
1913783 GTATCGATACA-
1 GTATCGATACAT
*
1913794 GTGTCGATACATT
1 GTATCGATACA-T
1913807 GTATCGATACAT
1 GTATCGATACAT
*
1913819 G-GT-GA-A-AT
1 GTATCGATACAT
1913827 GTATCGATACATT
1 GTATCGATACA-T
1913840 GTATCGATACAT
1 GTATCGATACAT
1913852 TGTGAGCCTA
Statistics
Matches: 47, Mismatches: 4, Indels: 13
0.73 0.06 0.20
Matches are distributed among these distances:
8 3 0.06
9 2 0.04
10 4 0.09
11 12 0.26
12 4 0.09
13 22 0.47
ACGTcount: A:0.32, C:0.14, G:0.20, T:0.33
Consensus pattern (12 bp):
GTATCGATACAT
Found at i:1917727 original size:42 final size:41
Alignment explanation
Indices: 1917681--1917787 Score: 126
Period size: 42 Copynumber: 2.5 Consensus size: 41
1917671 TTCTTCTCTC
* * *
1917681 CTCTTACTATCATCCCT-TTTCACTCTATTATCTCTCCTATCT
1 CTCTTCCTATCATCCCTCTATCA--CTACTATCTCTCCTATCT
*
1917723 CTCTTCCTATCATCCCTCCTATCACTACTATCTCTCGTATCT
1 CTCTTCCTATCATCCCT-CTATCACTACTATCTCTCCTATCT
*
1917765 CTCCTCCTATCATCCCTCCTATC
1 CTCTTCCTATCATCCCT-CTATC
1917788 TCTTCTTTCA
Statistics
Matches: 58, Mismatches: 5, Indels: 4
0.87 0.07 0.06
Matches are distributed among these distances:
42 54 0.93
44 4 0.07
ACGTcount: A:0.16, C:0.41, G:0.01, T:0.42
Consensus pattern (41 bp):
CTCTTCCTATCATCCCTCTATCACTACTATCTCTCCTATCT
Found at i:1917730 original size:12 final size:11
Alignment explanation
Indices: 1917711--1917790 Score: 51
Period size: 12 Copynumber: 7.3 Consensus size: 11
1917701 CACTCTATTA
1917711 TCTCTCCTATC
1 TCTCTCCTATC
1917722 TCTCTTCCTATC
1 TCTC-TCCTATC
*
1917734 ATCCCTCCTA--
1 -TCTCTCCTATC
* *
1917744 TCACTACTA--
1 TCTCTCCTATC
*
1917753 TCTCTCGTATC
1 TCTCTCCTATC
1917764 TCTCCTCCTATC
1 TCT-CTCCTATC
*
1917776 ATCCCTCCTATC
1 -TCTCTCCTATC
1917788 TCT
1 TCT
1917791 TCTTTCACTT
Statistics
Matches: 54, Mismatches: 9, Indels: 12
0.72 0.12 0.16
Matches are distributed among these distances:
9 13 0.24
11 9 0.17
12 27 0.50
13 5 0.09
ACGTcount: A:0.14, C:0.44, G:0.01, T:0.41
Consensus pattern (11 bp):
TCTCTCCTATC
Found at i:1919461 original size:19 final size:19
Alignment explanation
Indices: 1919437--1919490 Score: 72
Period size: 20 Copynumber: 2.8 Consensus size: 19
1919427 CACACCCAGA
***
1919437 TGTATCGATACATGTTGAT
1 TGTATCGATACATGACAAT
1919456 TGTATCGATACATGGACAAT
1 TGTATCGATACAT-GACAAT
1919476 TGTATCGATACATGA
1 TGTATCGATACATGA
1919491 AACTGGTAGT
Statistics
Matches: 31, Mismatches: 3, Indels: 2
0.86 0.08 0.06
Matches are distributed among these distances:
19 15 0.48
20 16 0.52
ACGTcount: A:0.31, C:0.13, G:0.20, T:0.35
Consensus pattern (19 bp):
TGTATCGATACATGACAAT
Found at i:1919543 original size:20 final size:20
Alignment explanation
Indices: 1919518--1919571 Score: 83
Period size: 20 Copynumber: 2.7 Consensus size: 20
1919508 CTACCACTGT
*
1919518 TTGTATCGATACATGGT-ACA
1 TTGTATCGATACATGATGA-A
1919538 TTGTATCGATACATGATGAA
1 TTGTATCGATACATGATGAA
1919558 TTGTATCGATACAT
1 TTGTATCGATACAT
1919572 TGCTTCTAAC
Statistics
Matches: 32, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
20 31 0.97
21 1 0.03
ACGTcount: A:0.31, C:0.13, G:0.19, T:0.37
Consensus pattern (20 bp):
TTGTATCGATACATGATGAA
Found at i:1923656 original size:15 final size:17
Alignment explanation
Indices: 1923625--1923656 Score: 50
Period size: 16 Copynumber: 2.0 Consensus size: 17
1923615 AGCAAGATGA
1923625 AAGCATCCAAAATGAAG
1 AAGCATCCAAAATGAAG
1923642 AAGC-TCCAAAA-GAAG
1 AAGCATCCAAAATGAAG
1923657 TTGATGAACA
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
15 4 0.27
16 7 0.47
17 4 0.27
ACGTcount: A:0.53, C:0.19, G:0.19, T:0.09
Consensus pattern (17 bp):
AAGCATCCAAAATGAAG
Found at i:1925690 original size:13 final size:13
Alignment explanation
Indices: 1925672--1925697 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
1925662 TTTTACAGAA
1925672 TGTATCGATACAT
1 TGTATCGATACAT
1925685 TGTATCGATACAT
1 TGTATCGATACAT
1925698 GGGTTCCTAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:1931462 original size:13 final size:13
Alignment explanation
Indices: 1931444--1931469 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
1931434 ACAAAGATCC
1931444 ATGTATCGATACA
1 ATGTATCGATACA
1931457 ATGTATCGATACA
1 ATGTATCGATACA
1931470 TGGAGTAATG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:1931535 original size:13 final size:13
Alignment explanation
Indices: 1931517--1931542 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
1931507 AGGGCAACTT
1931517 TGTATCGATACAA
1 TGTATCGATACAA
1931530 TGTATCGATACAA
1 TGTATCGATACAA
1931543 CACTTATGTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:1932396 original size:52 final size:48
Alignment explanation
Indices: 1932280--1932890 Score: 466
Period size: 49 Copynumber: 12.6 Consensus size: 48
1932270 CAAAGAATGA
* * * *
1932280 CAATATGCTGATTCATGGTCAGCGACATTAGACTTGAAGA-AGAA-TGC
1 CAATATGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATA-AAGTGC
* * ** * *
1932327 CAATGTTCTGAGACAAGGCCAGCGACATTGGGCTTAGGAATGTTAAAGATGC
1 CAATATGCTGATTCAAGGCCAGCGACATTGGACTTA--AA-GATAAAG-TGC
* ** ** *
1932379 CAATATGCTGACTCAAGGCCAATGGTATTGGACTTAAAGATGAAGGTGC
1 CAATATGCTGATTCAAGGCCAGCGACATTGGACTTAAAGAT-AAAGTGC
* *
1932428 CAATGTGCTGATTCAAGGCCAGCGACATTGGTCTTAAAGATAAAGATGC
1 CAATATGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATAAAG-TGC
* *
1932477 CAATATGCTGATTCAAGGCTAGCGATATTGGACTTAAAG-----GTGC
1 CAATATGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATAAAGTGC
* *
1932520 CAATGTGCTGATTCAAGGCCAGCGACATTGGTCTTAAAGATGAGAAATGTGC
1 CAATATGCTGATTCAAGGCCAGCGACATTGGACTTAAAGAT---AAA-GTGC
* ** * * *
1932572 CAATATGCTGATTCAAGGCTAGTAATATTGGACTCAAGAGGGTAAAGGTGC
1 CAATATGCTGATTCAAGGCCAGCGACATTGGACTTAA-A-GATAAA-GTGC
* * * *
1932623 CAATATGCTGATTCAAGGCCAGTGATATTGGACTTAAAGGTGGTTAAGGTGC
1 CAATATGCTGATTCAAGGCCAGCGACATTGGACTTAAA----GATAAAGTGC
* * * *
1932675 CAATGTGCTGATTCAAGGCCAACGACATCGGTCTTAAAGATGAAAGTGC
1 CAATATGCTGATTCAAGGCCAGCGACATTGGACTTAAAGAT-AAAGTGC
* ** * * *
1932724 CAATATGCTGATTCAAGGCCAACGACATTGTTCTTAGAGACAAGGTGC
1 CAATATGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATAAAGTGC
* * *
1932772 CAATATGCTGATTTAAGGCCAGTGATATTAGG-C-T-----T---GTGC
1 CAATATGCTGATTCAAGGCCAGCGACATT-GGACTTAAAGATAAAGTGC
* * *
1932811 CAATGTGCTGATTCAAGGCCAGCGACATTAGTA-TTAAAGATGAAGGTGC
1 CAATATGCTGATTCAAGGCCAGCGACATT-GGACTTAAAGAT-AAAGTGC
1932860 CAATATGCTGATTCAAGGCCAGCGACATTGG
1 CAATATGCTGATTCAAGGCCAGCGACATTGG
1932891 GCTTGGAAGG
Statistics
Matches: 451, Mismatches: 78, Indels: 69
0.75 0.13 0.12
Matches are distributed among these distances:
39 31 0.07
40 1 0.00
43 38 0.08
44 1 0.00
45 1 0.00
47 28 0.06
48 38 0.08
49 154 0.34
50 9 0.02
51 42 0.09
52 100 0.22
53 6 0.01
54 2 0.00
ACGTcount: A:0.31, C:0.17, G:0.26, T:0.26
Consensus pattern (48 bp):
CAATATGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATAAAGTGC
Found at i:1932894 original size:88 final size:87
Alignment explanation
Indices: 1932720--1932895 Score: 246
Period size: 88 Copynumber: 2.0 Consensus size: 87
1932710 AAAGATGAAA
* *
1932720 GTGCCAATATGCTGATTCAAGGCCAACGACATTGTTCTTAGAGACAAGGTGCCAATATGCTGATT
1 GTGCCAATATGCTGATTCAAGGCCAACGACATTGTTATTAAAGACAAGGTGCCAATATGCTGATT
* * *
1932785 TAAGGCCAGTGATATTAGGCTT
66 CAAGGCCAGCGACATTAGGCTT
* * *
1932807 GTGCCAATGTGCTGATTCAAGGCCAGCGACATTAG-TATTAAAGATGAAGGTGCCAATATGCTGA
1 GTGCCAATATGCTGATTCAAGGCCAACGACATT-GTTATTAAAGA-CAAGGTGCCAATATGCTGA
*
1932871 TTCAAGGCCAGCGACATTGGGCTT
64 TTCAAGGCCAGCGACATTAGGCTT
1932895 G
1 G
1932896 GAAGGGTTGC
Statistics
Matches: 78, Mismatches: 9, Indels: 3
0.87 0.10 0.03
Matches are distributed among these distances:
87 38 0.49
88 40 0.51
ACGTcount: A:0.28, C:0.19, G:0.26, T:0.27
Consensus pattern (87 bp):
GTGCCAATATGCTGATTCAAGGCCAACGACATTGTTATTAAAGACAAGGTGCCAATATGCTGATT
CAAGGCCAGCGACATTAGGCTT
Found at i:1932924 original size:30 final size:32
Alignment explanation
Indices: 1932888--1932965 Score: 90
Period size: 33 Copynumber: 2.5 Consensus size: 32
1932878 CCAGCGACAT
1932888 TGGGCTT-G-GAAGGGTTGCCACCGACTTGTG
1 TGGGCTTAGAGAAGGGTTGCCACCGACTTGTG
* *
1932918 TGGGCTTTAGAGAATGGTTGCCATCGACTTGTG
1 TGGGC-TTAGAGAAGGGTTGCCACCGACTTGTG
* *
1932951 TAGGCTT-TAGAAGGG
1 TGGGCTTAGAGAAGGG
1932966 GGTGCCACAG
Statistics
Matches: 40, Mismatches: 5, Indels: 5
0.80 0.10 0.10
Matches are distributed among these distances:
30 5 0.12
31 8 0.20
32 3 0.08
33 24 0.60
ACGTcount: A:0.18, C:0.15, G:0.37, T:0.29
Consensus pattern (32 bp):
TGGGCTTAGAGAAGGGTTGCCACCGACTTGTG
Found at i:1933077 original size:34 final size:32
Alignment explanation
Indices: 1932966--1933065 Score: 137
Period size: 32 Copynumber: 3.1 Consensus size: 32
1932956 TTTAGAAGGG
* *
1932966 GGTGCCACAGAGTTGTGGACTTAAAAGGAAAA
1 GGTGCCACAGAGTTATGGACTTAAAAGAAAAA
*
1932998 GGTGCCACAGAGTTATGGGCTTTGAAAAGAAAAA
1 GGTGCCACAGAGTTATGGAC-TT-AAAAGAAAAA
* *
1933032 GGTGCCACGGAGTTATGGACTTATAAGAAAAA
1 GGTGCCACAGAGTTATGGACTTAAAAGAAAAA
1933064 GG
1 GG
1933066 GATGCCACGG
Statistics
Matches: 60, Mismatches: 6, Indels: 4
0.86 0.09 0.06
Matches are distributed among these distances:
32 29 0.48
33 4 0.07
34 27 0.45
ACGTcount: A:0.37, C:0.12, G:0.31, T:0.20
Consensus pattern (32 bp):
GGTGCCACAGAGTTATGGACTTAAAAGAAAAA
Found at i:1933150 original size:33 final size:33
Alignment explanation
Indices: 1933104--1933203 Score: 132
Period size: 33 Copynumber: 3.1 Consensus size: 33
1933094 AAAAATGCAC
*
1933104 AGGAAAAAAGTGCCACGGAGTTGTGGACTTAAA
1 AGGAAAAAGGTGCCACGGAGTTGTGGACTTAAA
*
1933137 AGGAAAAAGGTGCCACGGAGTTGTGGACTT--T
1 AGGAAAAAGGTGCCACGGAGTTGTGGACTTAAA
* * * *
1933168 GGGAAAAAGATGCCACGAAGTTGTGGACTGAAA
1 AGGAAAAAGGTGCCACGGAGTTGTGGACTTAAA
1933201 AGG
1 AGG
1933204 GTGCCACGGA
Statistics
Matches: 57, Mismatches: 8, Indels: 4
0.83 0.12 0.06
Matches are distributed among these distances:
31 26 0.46
33 31 0.54
ACGTcount: A:0.36, C:0.12, G:0.34, T:0.18
Consensus pattern (33 bp):
AGGAAAAAGGTGCCACGGAGTTGTGGACTTAAA
Found at i:1933208 original size:27 final size:29
Alignment explanation
Indices: 1933105--1933622 Score: 146
Period size: 31 Copynumber: 17.0 Consensus size: 29
1933095 AAAATGCACA
*
1933105 GGAAAAAAGTGCCACGGAGTTGTGGACTT
1 GGAAAAAGGTGCCACGGAGTTGTGGACTT
1933134 AAAAGGAAAAAGGTGCCACGGAGTTGTGGACTTT
1 ----GGAAAAAGGTGCCACGGAGTTGTGGAC-TT
* *
1933168 GGGAAAAAGATGCCACGAAGTTGTGGAC-T
1 -GGAAAAAGGTGCCACGGAGTTGTGGACTT
* *
1933197 -GAAAAGGGTGCCACGGAGTTGTGGGCTT
1 GGAAAAAGGTGCCACGGAGTTGTGGACTT
* ** ** *
1933225 --AAAGAAGAAATGCCACTAAGTCATGGATTTT
1 GGAAA-AAG--GTGCCACGGAGTTGTGGA-CTT
** * * * *
1933256 AAAGAAAATGCGCCACTGAGTCGTGGACTTT
1 GGA-AAAAGGTGCCACGGAGTTGTGGAC-TT
* * * * **
1933287 GGGAAGAGATTGCCACTGAGTCATGGACTTT
1 GGAAAAAG-GTGCCACGGAGTTGTGGAC-TT
* * * *
1933318 GAAGAAAAGATGCCACTGAGTCGTGGACTTT
1 GGA-AAAAGGTGCCACGGAGTTGTGGAC-TT
* * * * *
1933349 GGGAAGAGATTGCCACTGAGTCGTGGACTT
1 GGAAAAAG-GTGCCACGGAGTTGTGGACTT
* * * *
1933379 AGAAAAGAGATGCCACTGAGTCGTGGACTT
1 GGAAAA-AGGTGCCACGGAGTTGTGGACTT
* * * **
1933409 AGAAAAGAGATGCCACTGAGTCATGGACTTT
1 GGAAAA-AGGTGCCACGGAGTTGTGGAC-TT
* * * * *
1933440 GGGAAGAGATTGCCACTGAGTCGTGGACTT
1 GGAAAAAG-GTGCCACGGAGTTGTGGACTT
* * *
1933470 AGAAAAGAGATGCCACTGG-GTCGTGGACTT
1 GGAAAA-AGGTGCCAC-GGAGTTGTGGACTT
** *
1933500 GGAAGAAAAGGATGCCATTGAGTCGTGGACTT
1 GG-A-AAAAGG-TGCCACGGAGTTGTGGACTT
* * *
1933532 AGAAAAGAGGTGCCACTGAGATGTGGACTTT
1 GGAAAA-AGGTGCCACGGAGTTGTGGAC-TT
* * ** *
1933563 GAAGAAAAGATGCCACTAAGTCGTGGACTTT
1 GGA-AAAAGGTGCCACGGAGTTGTGGAC-TT
* * * * *
1933594 GGGAAGAGATGCCACTGAGTCGTGGACTT
1 GGAAAAAGGTGCCACGGAGTTGTGGACTT
1933623 TGAGAAGAAA
Statistics
Matches: 388, Mismatches: 72, Indels: 54
0.75 0.14 0.11
Matches are distributed among these distances:
27 25 0.06
28 3 0.01
29 3 0.01
30 136 0.35
31 161 0.41
32 27 0.07
33 29 0.07
34 4 0.01
ACGTcount: A:0.31, C:0.15, G:0.32, T:0.22
Consensus pattern (29 bp):
GGAAAAAGGTGCCACGGAGTTGTGGACTT
Found at i:1933301 original size:62 final size:60
Alignment explanation
Indices: 1933229--1933723 Score: 418
Period size: 61 Copynumber: 8.1 Consensus size: 60
1933219 GGGCTTAAAG
* * * * * *
1933229 AAGAAATGCCACTAAGTCATGGATTTTAAAGAAAATGCGCCACTGAGTCGTGGACTTTGGG
1 AAGAGATGCCACTGAGTCGTGGATTTGAAAGAAAAT-TGCCACTGAGTCGTGGACTTTGGA
* * *
1933290 AAGAGATTGCCACTGAGTCATGGACTTTG-AAGAAAAGATGCCACTGAGTCGTGGACTTTGGG
1 AAGAGA-TGCCACTGAGTCGTGGA-TTTGAAAGAAAA-TTGCCACTGAGTCGTGGACTTTGGA
* * * *
1933352 AAGAGATTGCCACTGAGTCGTGGACTTAGAAA-AGAGA-TGCCACTGAGTCGTGGACTTAGAA
1 AAGAGA-TGCCACTGAGTCGTGGA-TTTGAAAGA-AAATTGCCACTGAGTCGTGGACTTTGGA
* * * * *
1933413 AAGAGATGCCACTGAGTCATGGACTTTGGGAAG-AGATTGCCACTGAGTCGTGGACTTAGAA
1 AAGAGATGCCACTGAGTCGTGGA-TTT-GAAAGAAAATTGCCACTGAGTCGTGGACTTTGGA
* * * * * * *
1933474 AAGAGATGCCACTGGGTCGTGGACTTGGAAGAAAAGGATGCCATTGAGTCGTGGACTTAGAA
1 AAGAGATGCCACTGAGTCGTGGATTTGAAAGAAAA--TTGCCACTGAGTCGTGGACTTTGGA
* * * *
1933536 AAGAGGTGCCACTGAGAT-GTGGACTTTG-AAGAAAAGATGCCACTAAGTCGTGGACTTTGGG
1 AAGAGATGCCACTGAG-TCGTGGA-TTTGAAAGAAAA-TTGCCACTGAGTCGTGGACTTTGGA
*
1933597 AAGAGATGCCACTGAGTCGTGGACTTTGAGAAG-AAA-TGCCACTTAGTCGTGGACTTTGGA
1 AAGAGATGCCACTGAGTCGTGGA-TTTGA-AAGAAAATTGCCACTGAGTCGTGGACTTTGGA
* * * ** *
1933657 AAGAGATGCTATTAAGTCGCAGACTTTGAGAAG-AGA-TGCCACTGAGTCGTGGACTTTGGGA
1 AAGAGATGCCACTGAGTCGTGGA-TTTGA-AAGAAAATTGCCACTGAGTCGTGGACTTT-GGA
1933718 AA-AGAT
1 AAGAGAT
1933724 TTAAAGAATT
Statistics
Matches: 379, Mismatches: 38, Indels: 35
0.84 0.08 0.08
Matches are distributed among these distances:
59 5 0.01
60 103 0.27
61 131 0.35
62 126 0.33
63 14 0.04
ACGTcount: A:0.31, C:0.16, G:0.31, T:0.23
Consensus pattern (60 bp):
AAGAGATGCCACTGAGTCGTGGATTTGAAAGAAAATTGCCACTGAGTCGTGGACTTTGGA
Found at i:1933395 original size:30 final size:30
Alignment explanation
Indices: 1933139--1933714 Score: 533
Period size: 30 Copynumber: 19.0 Consensus size: 30
1933129 GACTTAAAAG
* * *
1933139 GAAAA-AGGTGCCACGGAGTTGTGGACTTT
1 GAAAAGAGATGCCACTGAGTCGTGGACTTT
*
1933168 GGGAAAA-AGATGCCAC-GAAGTTGTGGAC--T
1 --GAAAAGAGATGCCACTG-AGTCGTGGACTTT
* * * *
1933197 GAAAAG-GGTGCCACGGAGTTGTGGGC-TT
1 GAAAAGAGATGCCACTGAGTCGTGGACTTT
* * * *
1933225 AAAGAAGAAATGCCACTAAGTCATGGA-TTT
1 GAA-AAGAGATGCCACTGAGTCGTGGACTTT
* *
1933255 -TAAAGAAAATGCGCCACTGAGTCGTGGACTTT
1 GAAAAG-AGAT--GCCACTGAGTCGTGGACTTT
** *
1933287 GGGAAGAGATTGCCACTGAGTCATGGACTTT
1 GAAAAGAGA-TGCCACTGAGTCGTGGACTTT
*
1933318 GAAGAAAAGATGCCACTGAGTCGTGGACTTT
1 GAA-AAGAGATGCCACTGAGTCGTGGACTTT
** *
1933349 GGGAAGAGATTGCCACTGAGTCGTGGACTTA
1 GAAAAGAGA-TGCCACTGAGTCGTGGACTTT
*
1933380 GAAAAGAGATGCCACTGAGTCGTGGACTTA
1 GAAAAGAGATGCCACTGAGTCGTGGACTTT
*
1933410 GAAAAGAGATGCCACTGAGTCATGGACTTT
1 GAAAAGAGATGCCACTGAGTCGTGGACTTT
** *
1933440 GGGAAGAGATTGCCACTGAGTCGTGGACTTA
1 GAAAAGAGA-TGCCACTGAGTCGTGGACTTT
* *
1933471 GAAAAGAGATGCCACTGGGTCGTGGACTTG
1 GAAAAGAGATGCCACTGAGTCGTGGACTTT
* * *
1933501 GAAGAAAAGGATGCCATTGAGTCGTGGACTTA
1 GAA-AAGA-GATGCCACTGAGTCGTGGACTTT
*
1933533 GAAAAGAGGTGCCACTGAGAT-GTGGACTTT
1 GAAAAGAGATGCCACTGAG-TCGTGGACTTT
* *
1933563 GAAGAAAAGATGCCACTAAGTCGTGGACTTT
1 GAA-AAGAGATGCCACTGAGTCGTGGACTTT
**
1933594 GGGAAGAGATGCCACTGAGTCGTGGACTTT
1 GAAAAGAGATGCCACTGAGTCGTGGACTTT
* * *
1933624 GAGAAGAAATGCCACTTAGTCGTGGACTTT
1 GAAAAGAGATGCCACTGAGTCGTGGACTTT
* * * * **
1933654 GGAAAGAGATGCTATTAAGTCGCAGACTTT
1 GAAAAGAGATGCCACTGAGTCGTGGACTTT
*
1933684 GAGAAGAGATGCCACTGAGTCGTGGACTTT
1 GAAAAGAGATGCCACTGAGTCGTGGACTTT
1933714 G
1 G
1933715 GGAAAAGATT
Statistics
Matches: 453, Mismatches: 71, Indels: 43
0.80 0.13 0.08
Matches are distributed among these distances:
27 21 0.05
28 7 0.02
29 9 0.02
30 218 0.48
31 161 0.36
32 33 0.07
33 4 0.01
ACGTcount: A:0.30, C:0.15, G:0.31, T:0.23
Consensus pattern (30 bp):
GAAAAGAGATGCCACTGAGTCGTGGACTTT
Found at i:1933452 original size:153 final size:153
Alignment explanation
Indices: 1933267--1933712 Score: 618
Period size: 153 Copynumber: 2.9 Consensus size: 153
1933257 AAGAAAATGC
*
1933267 GCCACTGAGTCGTGGACTTTGGGAAGAGATTGCCACTGAGTCATGGACTTTGAAGAAAAGATGCC
1 GCCACTGAGTCGTGGACTTTGGGAAGAGATTGCCACTGAGTCGTGGACTTTGAAGAAAAGATGCC
*
1933332 ACTGAGTCGTGGACTTTGGGAAGAGATTGCCACTGAGTCGTGGACTTAGAAAAGAGATGCCACTG
66 ACTGAGTCGTGGACTTTGGGAAGAGA-TGCCATTGAGTCGTGGACTTAGAAAAGAGATGCCACTG
*
1933397 AGTCGTGGACTTAGAA-AAGAGAT
130 AGTCGTGGACTTAGAAGAAAAGAT
* * *
1933420 GCCACTGAGTCATGGACTTTGGGAAGAGATTGCCACTGAGTCGTGGACTTAGAA-AAGAGATGCC
1 GCCACTGAGTCGTGGACTTTGGGAAGAGATTGCCACTGAGTCGTGGACTTTGAAGAAAAGATGCC
* * *
1933484 ACTGGGTCGTGGAC-TTGGAAGAAAAGGATGCCATTGAGTCGTGGACTTAGAAAAGAGGTGCCAC
66 ACTGAGTCGTGGACTTTGG--GAAGA-GATGCCATTGAGTCGTGGACTTAGAAAAGAGATGCCAC
*
1933548 TGAGAT-GTGGACTTTGAAGAAAAGAT
128 TGAG-TCGTGGACTTAGAAGAAAAGAT
*
1933574 GCCACTAAGTCGTGGACTTTGGGAAGAGA-TGCCACTGAGTCGTGGACTTTG-AGAAGAA-ATGC
1 GCCACTGAGTCGTGGACTTTGGGAAGAGATTGCCACTGAGTCGTGGACTTTGAAGAA-AAGATGC
* * * * ** * *
1933636 CACTTAGTCGTGGACTTTGGAAAGAGATGCTATTAAGTCGCAGACTTTGAGAAGAGATGCCACTG
65 CACTGAGTCGTGGACTTTGGGAAGAGATGCCATTGAGTCGTGGACTTAGAAAAGAGATGCCACTG
1933701 AGTCGTGGACTT
130 AGTCGTGGACTT
1933713 TGGGAAAAGA
Statistics
Matches: 259, Mismatches: 25, Indels: 20
0.85 0.08 0.07
Matches are distributed among these distances:
150 1 0.00
151 47 0.18
152 26 0.10
153 144 0.56
154 41 0.16
ACGTcount: A:0.29, C:0.16, G:0.31, T:0.23
Consensus pattern (153 bp):
GCCACTGAGTCGTGGACTTTGGGAAGAGATTGCCACTGAGTCGTGGACTTTGAAGAAAAGATGCC
ACTGAGTCGTGGACTTTGGGAAGAGATGCCATTGAGTCGTGGACTTAGAAAAGAGATGCCACTGA
GTCGTGGACTTAGAAGAAAAGAT
Found at i:1934669 original size:5 final size:5
Alignment explanation
Indices: 1934653--1934700 Score: 55
Period size: 5 Copynumber: 9.8 Consensus size: 5
1934643 TGAAATGGGT
* *
1934653 TTTTG -TTT- TTTTG TTTTG TTTTG TTTTA TTTTG CTTTTG TTTTC TTTT
1 TTTTG TTTTG TTTTG TTTTG TTTTG TTTTG TTTTG -TTTTG TTTTG TTTT
1934701 TTGTGTTGGG
Statistics
Matches: 37, Mismatches: 3, Indels: 6
0.80 0.07 0.13
Matches are distributed among these distances:
4 6 0.16
5 26 0.70
6 5 0.14
ACGTcount: A:0.02, C:0.04, G:0.12, T:0.81
Consensus pattern (5 bp):
TTTTG
Found at i:1934690 original size:16 final size:15
Alignment explanation
Indices: 1934653--1934700 Score: 55
Period size: 16 Copynumber: 3.3 Consensus size: 15
1934643 TGAAATGGGT
*
1934653 TTTTG-TTT-TTTTG
1 TTTTGTTTTGTTTTA
1934666 TTTTGTTTTGTTTTA
1 TTTTGTTTTGTTTTA
*
1934681 TTTTGCTTTTGTTTTC
1 TTTTG-TTTTGTTTTA
1934697 TTTT
1 TTTT
1934701 TTGTGTTGGG
Statistics
Matches: 30, Mismatches: 2, Indels: 3
0.86 0.06 0.09
Matches are distributed among these distances:
13 5 0.17
14 3 0.10
15 9 0.30
16 13 0.43
ACGTcount: A:0.02, C:0.04, G:0.12, T:0.81
Consensus pattern (15 bp):
TTTTGTTTTGTTTTA
Found at i:1934973 original size:20 final size:20
Alignment explanation
Indices: 1934948--1935003 Score: 80
Period size: 20 Copynumber: 2.8 Consensus size: 20
1934938 CCTTTGCACT
1934948 CTTTTTTTGTGTTTTTTTTC
1 CTTTTTTTGTGTTTTTTTTC
1934968 CTTTTTGTT-TG-TTTTTTTC
1 CTTTTT-TTGTGTTTTTTTTC
1934987 CTTTTTTTTGTGTTTTT
1 C-TTTTTTTGTGTTTTT
1935004 ACTTTTGACT
Statistics
Matches: 32, Mismatches: 0, Indels: 7
0.82 0.00 0.18
Matches are distributed among these distances:
19 11 0.34
20 15 0.47
21 6 0.19
ACGTcount: A:0.00, C:0.09, G:0.11, T:0.80
Consensus pattern (20 bp):
CTTTTTTTGTGTTTTTTTTC
Found at i:1935008 original size:18 final size:18
Alignment explanation
Indices: 1934948--1935009 Score: 79
Period size: 18 Copynumber: 3.3 Consensus size: 18
1934938 CCTTTGCACT
1934948 CTTTTTTTGTGTTTTTTTTC
1 CTTTTTTT-TG-TTTTTTTC
1934968 CTTTTTGTTTGTTTTTTTC
1 CTTTTT-TTTGTTTTTTTC
* *
1934987 CTTTTTTTTGTGTTTTTA
1 CTTTTTTTTGTTTTTTTC
1935005 CTTTT
1 CTTTT
1935010 GACTTTTTCA
Statistics
Matches: 39, Mismatches: 2, Indels: 4
0.87 0.04 0.09
Matches are distributed among these distances:
18 15 0.38
19 14 0.36
20 8 0.21
21 2 0.05
ACGTcount: A:0.02, C:0.10, G:0.10, T:0.79
Consensus pattern (18 bp):
CTTTTTTTTGTTTTTTTC
Found at i:1941544 original size:13 final size:13
Alignment explanation
Indices: 1941526--1941551 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
1941516 ACAAAGATCC
1941526 ATGTATCGATACA
1 ATGTATCGATACA
1941539 ATGTATCGATACA
1 ATGTATCGATACA
1941552 TGGAGTAATG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:1941617 original size:13 final size:13
Alignment explanation
Indices: 1941599--1941624 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
1941589 AGGGCAACTT
1941599 TGTATCGATACAA
1 TGTATCGATACAA
1941612 TGTATCGATACAA
1 TGTATCGATACAA
1941625 CACTTATGTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:1941973 original size:13 final size:13
Alignment explanation
Indices: 1941955--1941981 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
1941945 CTACCACTGT
1941955 TTGTATCGATACA
1 TTGTATCGATACA
1941968 TTGTATCGATACA
1 TTGTATCGATACA
1941981 T
1 T
1941982 GATGAATTGT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.30, C:0.15, G:0.15, T:0.41
Consensus pattern (13 bp):
TTGTATCGATACA
Found at i:1947786 original size:3 final size:3
Alignment explanation
Indices: 1947778--1947802 Score: 50
Period size: 3 Copynumber: 8.3 Consensus size: 3
1947768 TCCGAGTCGC
1947778 CAT CAT CAT CAT CAT CAT CAT CAT C
1 CAT CAT CAT CAT CAT CAT CAT CAT C
1947803 TTCCTTTTCA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 22 1.00
ACGTcount: A:0.32, C:0.36, G:0.00, T:0.32
Consensus pattern (3 bp):
CAT
Found at i:1949433 original size:13 final size:13
Alignment explanation
Indices: 1949415--1949445 Score: 53
Period size: 13 Copynumber: 2.4 Consensus size: 13
1949405 ACATTTCATC
1949415 ATGTATCGATACA
1 ATGTATCGATACA
1949428 ATGTATCGATACA
1 ATGTATCGATACA
*
1949441 TTGTA
1 ATGTA
1949446 CCATGTATCG
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 17 1.00
ACGTcount: A:0.35, C:0.13, G:0.16, T:0.35
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:1949433 original size:33 final size:33
Alignment explanation
Indices: 1949395--1949461 Score: 100
Period size: 33 Copynumber: 2.0 Consensus size: 33
1949385 GTTACAAGCT
* *
1949395 ATGTATCTATACATT-TCATCATGTATCGATACA
1 ATGTATCGATACATTGT-ACCATGTATCGATACA
1949428 ATGTATCGATACATTGTACCATGTATCGATACA
1 ATGTATCGATACATTGTACCATGTATCGATACA
1949461 A
1 A
1949462 ATAGTGATAG
Statistics
Matches: 31, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
33 30 0.97
34 1 0.03
ACGTcount: A:0.34, C:0.18, G:0.12, T:0.36
Consensus pattern (33 bp):
ATGTATCGATACATTGTACCATGTATCGATACA
Found at i:1949547 original size:13 final size:13
Alignment explanation
Indices: 1949529--1949555 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
1949519 TACAATGAAC
1949529 ATGTATCGATACA
1 ATGTATCGATACA
1949542 ATGTATCGATACA
1 ATGTATCGATACA
1949555 A
1 A
1949556 AGCAAGATGT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.41, C:0.15, G:0.15, T:0.30
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:1949573 original size:33 final size:32
Alignment explanation
Indices: 1949512--1949574 Score: 90
Period size: 33 Copynumber: 1.9 Consensus size: 32
1949502 CAATTGTCTA
*
1949512 GTATCGATACAATGAACATGTATCGATACAAT
1 GTATCGATACAAAGAACATGTATCGATACAAT
* *
1949544 GTATCGATACAAAGCAAGATGTATTGATACA
1 GTATCGATACAAAG-AACATGTATCGATACA
1949575 TCTAGGTGTG
Statistics
Matches: 27, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
32 13 0.48
33 14 0.52
ACGTcount: A:0.41, C:0.14, G:0.17, T:0.27
Consensus pattern (32 bp):
GTATCGATACAAAGAACATGTATCGATACAAT
Found at i:1951162 original size:476 final size:474
Alignment explanation
Indices: 1949862--1972799 Score: 14439
Period size: 475 Copynumber: 48.2 Consensus size: 474
1949852 AGATCCTAAC
*
1949862 AATTTTGAATTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATC
1 AATTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATC
* ** *
1949927 ATTTATTCTAACAAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTA
66 ATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATTATTACTA
* * * * * * * * *
1949992 GAATCCTTGTTGGTCTCATTTGACGCACGAACATAGACATTATAAAAATTGGTTAGAAAAAAGCC
131 GAATCCATATTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGAGAAGAAAGCC
** * * * *
1950057 TTTCTTGTGAAACCAAAGCATCAACATCATCTATCCTAATGAGAAGACTATGTTTATGTTGCCTA
196 TTTCTTGCAAAACCAAAGCATCAATATCATGTATCCTTATGAGAAGACTATGTTTATGGTGCCTA
* * * * * *
1950122 TTCCTGAAAAGAATGGGGATTAGTATGACTATTCATGTTTGTCATAGTTAAGAGATAAGCTTTGA
261 ATCCTGAAAAGAAT-GGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGA
* * ** *
1950187 ATCTATCAAAAA-TGAAGAAAAGAAAAGCTTTTCTTGCGACACCCAAGCA-CTAATGTCATGTAT
325 TTCTATCAAAAACGGTTG-AAAGAAAAGCTTTTCTTGCGACACCAAAGCATC-AATGTCATGTAT
** * * * *
1950250 CCTAATGAACAGAATGTGTTCTTAGTTCCCAATCTTGAAAAGAATGGAGACAGTTGTGAGAATCG
388 CCTAATGAAGGGAATGTGTTCTTGGTTCCCAATCTTGAAAAGAA-AGAGACTGTTGCGAGAATCG
* * * * * *
1950315 ATGCTGGACATATTTGAGAGATA
452 ATGCTTGTCTTATTTAAGGGATG
* * * *
1950338 AATTTTGATTTTAAGGAAAATAGGGGAAAGAAAAGTTTTCCATCCAAAAGAAAATCGTCAATATC
1 AATTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATC
* * * * * *
1950403 ATTTATCAT-ATCGAGGAG-TTGTGTTTATAGTGCCTAATGACAAACTGATTGAAGATCATTACT
66 ATTTATCCTAAT-GAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATTATTACT
* * ** * * *
1950466 AGAATCCATGTTTATCTCATTTGAGTTACGAACTTACACTTTATAAAAATTGGGGAGAAGAAAGC
130 AGAATCCATATTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGAGAAGAAAGC
* * * * * * * *
1950531 CTTTCTTGCGAAACTAAAGCATCAACATCGTCTATCCTAATGAGAAGACAATGTTTATGTTGCCT
195 CTTTCTTGCAAAACCAAAGCATCAATATCATGTATCCTTATGAGAAGACTATGTTTATGGTGCCT
* * * * *
1950596 AATCCTAAAAAGAATAGGGATTAGGATTACTATTCATGTTTGTCATT-TTTAAGAGATAAACTTT
260 AATCCTGAAAAGAAT-GGGATTAGTATGAGTATTCATGTTTGTC-TTATTTAAGAGACAAACTTT
* * ** * *
1950660 GATTCTATAAAAAATGGTAAAAAGAAAAACTTTTCTTGC-AGCACCAAAGCATCAATGTCTTGTA
323 GATTCTATCAAAAACGGTTGAAAGAAAAGCTTTTCTTGCGA-CACCAAAGCATCAATGTCATGTA
** * * * *
1950724 TCCTAATGAAGAAAACGTGTTCTTGGTTCCAAATCTTGAAAAGAGAAGAGACAGTTGCTAGAATC
387 TCCTAATGAAGGGAATGTGTTCTTGGTTCCCAATCTTGAAAAGA-AAGAGACTGTTGCGAGAATC
** *
1950789 GATGCTTGTGATATTTAAGGGATA
451 GATGCTTGTCTTATTTAAGGGATG
* * * **
1950813 AATTTTTATTTTAAGAAAAATAGGGAAAAGAAAAGATTTCCATGTGAAAGAAAATCATCAATATC
1 AATTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATC
* * * *
1950878 ATTTATCCTAATGAGGAAAATATGTTTATAGTGCCTAATCGCAAAATGAATGAATATTATTACTA
66 ATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATTATTACTA
* * *
1950943 GAATCCATTTTTGTCTCATTTTAGGCACGAAGTTAGACTTTACAAAAATTGAGTG-GAAGAAAGC
131 GAATCCATATTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTG-GTGAGAAGAAAGC
** * *
1951007 CTTTCTTGCAAAAATAATGCATCAATATCATGTATCCTTATGAGAAGACTATGTTTATGGTTCCT
195 CTTTCTTGCAAAACCAAAGCATCAATATCATGTATCCTTATGAGAAGACTATGTTTATGGTGCCT
* * * *
1951072 AATCCTGAAAAGAATAAGGATTAGTATGAGTATTAATGTTTGTCTTATTTAAGAGATAAATTTTG
260 AATCCTGAAAAGAAT-GGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTG
* * * * *
1951137 ATTTTATCCAAAACGGTGGAAAGAAAAGCTTTTCCTGCGACACCAAATCATCAATGTCATGTATC
324 ATTCTATCAAAAACGGTTGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATC
* * * *
1951202 CTAATGAAGGGAATGTGTTCTTGGTTACCAATCCTGAAAAGAATGGAGACTATTGGCGAGAATCG
389 CTAATGAAGGGAATGTGTTCTTGGTTCCCAATCTTGAAAAGAA-AGAGACTGTT-GCGAGAATCG
*
1951267 ATGCTTGTCTTTTTTAAGGGAT-
452 ATGCTTGTCTTATTTAAGGGATG
* * * * *
1951289 AACTTTGATTTTAAGAAAAATATGGCAAAGAAAAGATTTCCATGCAAAACAAAATCATTAATATC
1 AATTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATC
* * *
1951354 ATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAAGGAATGAAGA-TCTTAGTA
66 ATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATTATTACTA
* * * * * * *
1951418 GAATCTATATTTGTCTCATTCGAGGTACAAACATAGACTTTACAAAAATTGGTAAGAAGAAAGCT
131 GAATCCATATTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGAGAAGAAAGCC
* * * * *
1951483 TTTCTGGCAAAACCAAAGCATCAATATCCA-GTATCCTTTTGAGAAAACTAAGTTTTTGGTGCCT
196 TTTCTTGCAAAACCAAAGCATCAATAT-CATGTATCCTTATGAGAAGACTATGTTTATGGTGCCT
* * * * *
1951547 AATCTTGCAACGAATGGGCATTAGTATGAGTATTCATGTTTGTTTTATTTGAGAGACAAACTTTG
260 AATCCTGAAAAGAATGGG-ATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTG
* * * *
1951612 ATTCCATCAAAAACGGTTGAAA-AAATAGCTTTTCTTGCGAGACCGAAGCATCAATGTCATCTAT
324 ATTCTATCAAAAACGGTTGAAAGAAA-AGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTAT
* * * * * *
1951676 CCTAATAAAGGGAATGTGTTTTTGGTTCCCAATCTAGAAAAAAAAGGAGACTGTTACGAGAATCA
388 CCTAATGAAGGGAATGTGTTCTTGGTTCCCAATCTTGAAAAGAAA-GAGACTGTTGCGAGAATCG
*
1951741 ATGCTTGCCTTATTTAAGGGATG
452 ATGCTTGTCTTATTTAAGGGATG
*
1951764 AATTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCGATATC
1 AATTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATC
* * * *
1951829 ATTTATCCTAATAAGGAGAATGTGTTTATAGTGCCTAATCAAAAAAGGAATGAAGA-TCTTACTA
66 ATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATTATTACTA
* * * * * *
1951893 GAATCTATAATTGTCTCGTTCGAGGCACGAACATAGACTTTACAAAAATTGGTGAGAAGAAAGCT
131 GAATCCATATTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGAGAAGAAAGCC
** * * * *
1951958 TTTCCAGCAAAACCAAAGCATCAATATCCTGTATCCTTATGAGAAAACTAAGTTTTTGGTGCCTA
196 TTTCTTGCAAAACCAAAGCATCAATATCATGTATCCTTATGAGAAGACTATGTTTATGGTGCCTA
* * * * *
1952023 ATCCTGAAACGGATGGGTATTATTATGAGTATTCATGTTTGTTTTGTTTAAGAGACAAACTTTGA
261 ATCCTGAAAAGAATGGG-ATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGA
* * *
1952088 TTCCATCAAAAACGGTTGAAAAAAAAAGCTTTTCCTGCGACACCAAAGCATCAATGTCATGTATC
325 TTCTATCAAAAACGGTTG-AAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATC
* * * *
1952153 CTAATGAAGGGAATGTGTTATTGCTTGCCAATCTTGAAAAGAATGAAGACTGTTGGCGAGAATCG
389 CTAATGAAGGGAATGTGTTCTTGGTTCCCAATCTTGAAAAGAAAG-AGACTGTT-GCGAGAATCG
1952218 ATGCTTGTCTTATTTAAGGGAT-
452 ATGCTTGTCTTATTTAAGGGATG
** *
1952240 AACATTGATTTTAAGGAAAAT-GTGGCAAAGAAAAGATTTCCATGCAAATGAAAATCATCAATAT
1 AATTTTGATTTTAAGGAAAATAG-GGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATAT
* * * * *
1952304 AATTTATCCTAATAAGGAGAATGT-TTTATAGTGCCAAATGACGAAAA-GAATGAAGA-TCTTAC
65 CATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCAC-AAAATGAATGAAGATTATTAC
* * * * *
1952366 TAGAATCTATATTTGTCTCATTTGAGACACGAACATAGACTTCACAAAAATTGGTGAGACGAAAG
129 TAGAATCCATATTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGAGAAGAAAG
* * * * * *
1952431 CTTTTAC-GGCAAAACCAAAGCATCAATATCCTGTATCCTTATGAGAAAACTAAGTTTTTGGTGC
194 CCTTT-CTTGCAAAACCAAAGCATCAATATCATGTATCCTTATGAGAAGACTATGTTTATGGTGC
* * * *
1952495 CTAATCCT-AAAATGAATGGGCATTACTATGAATATTAATGTTTGT-TCTATTTAAGAGACAAAA
258 CTAATCCTGAAAA-GAATGGG-ATTAGTATGAGTATTCATGTTTGTCT-TATTTAAGAGACAAAC
* *
1952558 TTTGATTCTATCAAAAACGGTTGAAAAAAAAGCTTTCCTTGCGACACCAAAGCATCAATGTCATG
320 TTTGATTCTATCAAAAACGGTTGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATG
* * * * * * *
1952623 TACCCTAACGAGGGGAATGTGTTTTTGGTTCCAAATCTAGAAAAGAAAGGAGACTGTTACGAGAA
385 TATCCTAATGAAGGGAATGTGTTCTTGGTTCCCAATCTTGAAAAGAAA-GAGACTGTTGCGAGAA
* *
1952688 TCAATGCTTGCCTTATTTAAGGGATG
449 TCGATGCTTGTCTTATTTAAGGGATG
** *
1952714 AATTTTGATTTTAAGGAAAATAGGATAAAGAAAAGATTTCCTTGCAAAAGAAAATCATCAATATC
1 AATTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATC
* * *
1952779 ATTTTTCCTAATGAGGAGAATGTGTTTACAGTGCCTAATCACAAAATGAATGAAGATCATTACTA
66 ATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATTATTACTA
* * * * *
1952844 GAAT-CATTGTTTGTCTTATTTGAGGCACGAACTTAGACTTTATAAAAATTGGTCAAAAGAAAGC
131 GAATCCA-TATTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGAGAAGAAAGC
* * * * *
1952908 CTTTCTTGCGAAACCAAAGCATCAACATCATCTATCCTAATGAGAAGACTATGTTTATGTTGCCT
195 CTTTCTTGCAAAACCAAAGCATCAATATCATGTATCCTTATGAGAAGACTATGTTTATGGTGCCT
* * * * * *
1952973 AATCCTAAAAAGAATGGGGATTAGTATGACTATTCATGTTTGTCATATTTAGGAGATAAGCTTTG
260 AATCCTGAAAAGAAT-GGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTG
* * * * * *
1953038 ATTCTATCGAAAAC-GATGAAAAGAAAAGCTTTTCTTGTGATACCCAAGCATCAATGTCACGTAT
324 ATTCTATCAAAAACGGTTG-AAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTAT
* * * * ** *
1953102 CCTAATGAAGAGAATGTGTTCTTGATTCTCAATCTAGAAAAGAAAAGAGACTGTTATGAGAATCA
388 CCTAATGAAGGGAATGTGTTCTTGGTTCCCAATCTTGAAAAG-AAAGAGACTGTTGCGAGAATCG
* *
1953167 ATGCTTGCCTTATTTAAGGGTTG
452 ATGCTTGTCTTATTTAAGGGATG
* *
1953190 AATTTTGATTTTAAGAAAAATAGGGTAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATC
1 AATTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATC
* * * *
1953255 ATTTATCCTCATAAGAAGAATGTGTTTATAGTGCCTAATCACAAAAGGAATGAAGATT-TTACTA
66 ATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATTATTACTA
* * * * * * *
1953319 GAATCTATATTTGTCTCGTTCGAGGCACGAACATAGACTTTACAAAAAATGGTGAAAAGAAAGCT
131 GAATCCATATTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGAGAAGAAAGCC
* * * * * *
1953384 TTTATGGCAAAACCAAAGCATCAATATCCTGTATCCTTATGAGAAAACTAAGTTTTTGGTGCCTA
196 TTTCTTGCAAAACCAAAGCATCAATATCATGTATCCTTATGAGAAGACTATGTTTATGGTGCCTA
* * * *
1953449 ATGCTGAAATGGATGGGCATTAGTATGAGTATTCATGTTTGTTTTATTTAAGAGACAAACTTTGA
261 ATCCTGAAAAGAATGGG-ATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGA
** *
1953514 TTCTATCAAAAACGGTTG-AA-AAAATTTTTTCCTGC-AGCACCAAAGCATCAATGTCATGTATC
325 TTCTATCAAAAACGGTTGAAAGAAAAGCTTTTCTTGCGA-CACCAAAGCATCAATGTCATGTATC
* * * * * *
1953576 CTAATGAGGGGAATGTGTTATTGCTTGCCAATCTTGAAAAGAATGGAGACTGTTGGAGAGAATCG
389 CTAATGAAGGGAATGTGTTCTTGGTTCCCAATCTTGAAAAGAA-AGAGACTGTT-GCGAGAATCG
*
1953641 ATGCTTGTCTTATTTGAGGGAT-
452 ATGCTTGTCTTATTTAAGGGATG
** *
1953663 AACATTGATTTTAAGGAAAATATGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATC
1 AATTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATC
* * * * * * *
1953728 ATTTATCCTAATTAGGAGAATGTGTTTATAGTTCCTAATCACGAAAGGACTAAAGA-TCTTACTA
66 ATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATTATTACTA
* * * * * * *
1953792 GAATCTATATTTGTCTCATTTGAGACACAAACATAGACTTTAC--GAATTGGTGAGAGGAAAGCT
131 GAATCCATATTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGAGAAGAAAGCC
* * * * * *
1953855 TTTATGGCAAAACCAAAGCATCAATATCCTGTATCCTTATGAGAAAACTAAGTTTTTGGTGCCTA
196 TTTCTTGCAAAACCAAAGCATCAATATCATGTATCCTTATGAGAAGACTATGTTTATGGTGCCTA
** * * * * *
1953920 ATTTTGAAACGAATGGGCATTAGTATGAGTATTCATGTTTTTTTTATTTACGAGACAAAATTTGA
261 ATCCTGAAAAGAATGGG-ATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGA
* * * *
1953985 TTCTACCAAAAACGGTTGAAAAAAAAGCTTTTCTTACGACACCAAAGCATCAATGTCATGTACCC
325 TTCTATCAAAAACGGTTGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCC
* * * * * *
1954050 TAATGAAGGGAATCTGTTTTTGGTTCTCAATCTAGAAAAGAAAGGAGACTGTT-AGAGAATCAAT
390 TAATGAAGGGAATGTGTTCTTGGTTCCCAATCTTGAAAAGAAA-GAGACTGTTGCGAGAATCGAT
*
1954114 GCCTT-CCTTATTTAAGGGATG
454 G-CTTGTCTTATTTAAGGGATG
* * *
1954135 AATTTCGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTTCGTGCAAAAGAAAATCATCAATATC
1 AATTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATC
* * * *
1954200 TTTTATCCTAACGAGGAGAATGTGTTTACAGTGCCTAATCACAAAATGAATGAAGATCATTACTA
66 ATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATTATTACTA
* * * * * *
1954265 GAATCCTTGTTTGACTTATTTGAGGCACGAACTTAGACTTTATAAAAATTGGTCAGAAGAAAGCC
131 GAATCCATATTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGAGAAGAAAGCC
* * * * * *
1954330 TTTTTTGCGAAACCAAAGCATCAACATCATCTATCCTAATGAGAAGACTATGTTTATGTTGCCTA
196 TTTCTTGCAAAACCAAAGCATCAATATCATGTATCCTTATGAGAAGACTATGTTTATGGTGCCTA
* * * * * *
1954395 ATCTTGAAAAGAATGGGGATTAGCT-TGACTATTCATGTTTATCATATTTAAGAGATAAACCTTG
261 ATCCTGAAAAGAAT-GGGATTAG-TATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTG
* * * *
1954459 ATTCTATCAAAAAC-GATGAAAAGAAAAGCTTTTCTTGTGGCACCCAAGCATCAATGTCATGTAT
324 ATTCTATCAAAAACGGTTG-AAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTAT
* * ** * *
1954523 CCTAATGAAGGGAATGTGTTCTTGGTTCCTAATCTCGAAAAGAAAGGAGACTACTACGAGAATCA
388 CCTAATGAAGGGAATGTGTTCTTGGTTCCCAATCTTGAAAAGAAA-GAGACTGTTGCGAGAATCG
* *
1954588 ATGCTTGCCTTATTTAAGGGATA
452 ATGCTTGTCTTATTTAAGGGATG
*
1954611 AATTTTGATTTTAAGGAAAATGGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATC
1 AATTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATC
* * * *
1954676 ATTTATCCTAATAAGGAGAATGAT-TTTATAGTGCCTAAACACAAAAGGAATGAAGA-TCTTACT
66 ATTTATCCTAATGAGGAGAATG-TGTTTATAGTGCCTAATCACAAAATGAATGAAGATTATTACT
* * * *
1954739 AGAATCTATATTTGTCTCATTCGAGGCACGAACATAGACTTTACAAAAGTTGGTGAGAAGAAAGC
130 AGAATCCATATTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGAGAAGAAAGC
* * * * * * *
1954804 TTTTATGGCAAAACCAAAGCATCAATATCCTGTATCCTTA--AGAAAACTAAGTTTTTGGTGCCT
195 CTTTCTTGCAAAACCAAAGCATCAATATCATGTATCCTTATGAGAAGACTATGTTTATGGTGCCT
* * *
1954867 AATCTTGAAACA-AATGGGCATTAGTCTGAGTATTCATGTTTGTTTTATTTAAGAGACAAACTTT
260 AATCCTGAAA-AGAATGGG-ATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTT
** * * *
1954931 GATTCTATCAAAAATTGTTGAAAAAAAAGCTTTTCTTGCGACACCTAAGCATCAATGCCATGTAT
323 GATTCTATCAAAAACGGTTGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTAT
** * * * *
1954996 CCTAATGAAAAGAATGTGTTTTTGGTTCCCAATC-TAAAAAGAAAGGAGACTGTTACGAGAATCA
388 CCTAATGAAGGGAATGTGTTCTTGGTTCCCAATCTTGAAAAGAAA-GAGACTGTTGCGAGAATCG
* *
1955060 ATGCTTGCCTTATTTAAGGGAGG
452 ATGCTTGTCTTATTTAAGGGATG
* * * *
1955083 AATTTTGATTTTAAGGAAAATAAGGCAAAGAAAAGATTTTCATTG-AAAAGAAAATCACCGATAT
1 AATTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCA-TGCAAAAGAAAATCATCAATAT
* * * *
1955147 CATTTATCCTAACGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATAAATGAAGATCATTATT
65 CATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATTATTACT
* * * *
1955212 AGAATCC-TAGTTTGTCTTATTTGAGGTACGAACTTAGACTTTATAAAAATTGGTCAGAAGAAAG
130 AGAATCCATA-TTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGAGAAGAAAG
* * ** * **
1955276 CCTTTCTTGCGAAACCAAAGCATCAACATCACCTATCCTAATGAGAAGACTATGTTTATCTTGCC
194 CCTTTCTTGCAAAACCAAAGCATCAATATCATGTATCCTTATGAGAAGACTATGTTTATGGTGCC
* * * * * * * **
1955341 TAATCCTAAAAAGAATGGGGATTAATATTACTATTTATGTTTGTCATATTTAAGAGATAGGCTTT
259 TAATCCTGAAAAGAAT-GGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTT
* *
1955406 GATTCTATCAAAAA-TGATG-AAG-AAAG--------GC-A-ACC-AAGCATCAATGTCATGTGA
323 GATTCTATCAAAAACGGTTGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGT-A
* * * * *
1955457 -CCTAATGAATGGAAAGTGTTCTTAGTTCCCAATCTTGAAAAGAATGGAGACAGTTGCGAGAATA
387 TCCTAATGAAGGGAATGTGTTCTTGGTTCCCAATCTTGAAAAGAA-AGAGACTGTTGCGAGAAT-
* *
1955521 C-ATG-TTGGT-TATATTTAAGAGATA
450 CGATGCTT-GTCT-TATTTAAGGGATG
* * * * *
1955545 AATTTTGATTATAAGGAAAATAGAGCAAAGAAAAGTTTTCCATCCAAAAAAAAATCATCAATATC
1 AATTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATC
* * *
1955610 ATTTATCCT-ATCGAGAAGATTGTGTTTATAGTGCCTAATCA-AAAATTGAATGAAGATCATTAC
66 ATTTATCCTAAT-GAGGAGAATGTGTTTATAGTGCCTAATCACAAAA-TGAATGAAGATTATTAC
* * * * ** *
1955673 TAGAATACGTGTTTGACTCATTTGAGTTACGAACTTACACTTTACAAAAATTGGTGAGAA-AATA
129 TAGAATCCATATTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGAGAAGAA-A
* * * * * * *
1955737 GCCTTTCTTGCGAAACAAAAGCATCAACATCGTCTATCCTTATGAGAAGACTATG-TTATGTTGG
193 GCCTTTCTTGCAAAACCAAAGCATCAATATCATGTATCCTTATGAGAAGACTATGTTTATGGTGC
* * * * *
1955801 CTAATCCTAAAAAGAATGGGGATTAGGATGACTATTCATGTTTGTCATT-TTAAAGAGACAAGCT
258 CTAATCCTGAAAAGAAT-GGGATTAGTATGAGTATTCATGTTTGTC-TTATTTAAGAGACAAACT
* * *** * * *
1955865 TTGATTCTATTAAAAATGGAAAAAAGAAAAGCTTTTCTTGC-AGTACCAAAGCGTCAACGTCATG
321 TTGATTCTATCAAAAACGGTTGAAAGAAAAGCTTTTCTTGCGA-CACCAAAGCATCAATGTCATG
** * * *
1955929 TATCCTAATGAAGAAAATGTGTTCTCGGCTCCCAATCTTGAAAAGAAAGGAGACAGTTGCTG-GA
385 TATCCTAATGAAGGGAATGTGTTCTTGGTTCCCAATCTTGAAAAGAAA-GAGACTGTTGC-GAGA
* ** *
1955993 ATCGATGCTAGTGATATTTGAGGGATG
448 ATCGATGCTTGTCTTATTTAAGGGATG
* *
1956020 AATTTTTATTTTAAGGAAAATAGGGCAAAGAAAAGCTTTCCATGCAAAAGAAAATCATCAATATC
1 AATTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATC
* * * * * *
1956085 ATTTATCCTATTGAGGAGAATATGTTTATAGTACCTAATCACATAATTAATGAATATCT-TTACT
66 ATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGAT-TATTACT
* * * *
1956149 AGAATCCATGTTTGTCTTATTTGAGGCACGAACTTTGACTTTATAAAAATTAAGG-G-GAAGAAA
130 AGAATCCATATTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATT--GGTGAGAAGAAA
* * * * *
1956212 GCCTTTCTTGCGAAACTAATGCATCAATATCATGTATCCTTATGAGAAGACTATGTTTACGATGC
193 GCCTTTCTTGCAAAACCAAAGCATCAATATCATGTATCCTTATGAGAAGACTATGTTTATGGTGC
* * * * * *
1956277 CTAATCCAGGAAAGAATAAGGATTAGTATGAGTATTAATGTTTATCTTATTTAAGAGACAAATTT
258 CTAATCCTGAAAAGAAT-GGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTT
* * * * ** * * * * *
1956342 TGTTTTTATCCAAAATGGTAAAAAGAAAAGTTTTTCTTGTGATAGCAAAGCATTAATGTCATGTA
322 TGATTCTATCAAAAACGGTTGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTA
* * *
1956407 TCCTAATGAAGGGAATGTGTTCTTGGTTACTAATCTTGAAAAGAATAGAGACTGTTGGTGAGAAT
387 TCCTAATGAAGGGAATGTGTTCTTGGTTCCCAATCTTGAAAAGAA-AGAGACTGTT-GCGAGAAT
1956472 CGATGCTTGTCTTATTTAAGGGAT-
450 CGATGCTTGTCTTATTTAAGGGATG
* *
1956496 AACTTTGATTTTAAGGAAAATATGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATC
1 AATTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATC
* * * *
1956561 ATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAAGGAAAGAA-AATCTTACTA
66 ATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATTATTACTA
* ** *
1956625 GAATCTATATTTGTCTCATTTGAGGCACGAAAATGGACTTTACAAAAATTGGTGAGAAGAAAG-C
131 GAATCCATATTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGAGAAGAAAGCC
* * * * * *
1956689 TTTTTTAGCAAAACCAAAGCATCAATATCCTGCT-TCTTTATGAGAAAACTAAGTTTTTGGTGCC
196 TTTCTT-GCAAAACCAAAGCATCAATATCATG-TATCCTTATGAGAAGACTATGTTTATGGTGCC
* * *
1956753 TAATCCTGAAACGAATGGGCTTTAGTATGAGTATTCATGTTTGTTTTATTTAAGAGACAAACTTT
259 TAATCCTGAAAAGAATGGG-ATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTT
* * * *
1956818 GATTCTATCAAAAACGATTGAAAAAAAGAGCTTTTCTTGCGATACCAAAGCATCAATGCCATGTA
323 GATTCTATCAAAAACGGTTGAAAGAAA-AGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTA
* * * **
1956883 TCCTAATGAAGGGAATGTGTTTTTGGTTCCCAATCTAG-AAAGAAAGGAGATTGTTATGAGAATC
387 TCCTAATGAAGGGAATGTGTTCTTGGTTCCCAATCTTGAAAAGAAA-GAGACTGTTGCGAGAATC
* * *
1956947 AATGATTGCCTTATTTAAGGGATG
451 GATGCTTGTCTTATTTAAGGGATG
* * *
1956971 AATTTTGATTTTATGGATAATAGGGCAAAGAAAAGATTTTCATGCAAAAGAAAATCATCAATATC
1 AATTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATC
* *
1957036 ATTTATCCTAACGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTA
66 ATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATTATTACTA
* * * * *
1957101 GAATCCTTGTTTGTCTTATTTGAGGCACGAACTTAGACTTTATAAAAATTGGTCAGAAGAAAGCC
131 GAATCCATATTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGAGAAGAAAGCC
** * ** * **
1957166 TTTCTTGTGAAACCAAAGCATCAACATCACCTATCCTAATGAGAAGACTATGTTTATCTTGCCTA
196 TTTCTTGCAAAACCAAAGCATCAATATCATGTATCCTTATGAGAAGACTATGTTTATGGTGCCTA
* * *
1957231 ATCCTGAAAAGAATGGGGA-T--TA--ACTATTCATGTTTGT-TATATTTAAGAGA-TAGCTTTG
261 ATCCTGAAAAGAAT-GGGATTAGTATGAGTATTCATGTTTGTCT-TATTTAAGAGACAAACTTTG
* * * * *
1957289 ATTCTATCAAAAA-TGATGAAAAAAAAAGTTTTTCTTGCGGCAACC-AAGCATCAATGTCATGTA
324 ATTCTATCAAAAACGGTTG-AAAGAAAAGCTTTTCTTGCGAC-ACCAAAGCATCAATGTCATGTA
* * * * *
1957352 TCCTAATGAAAGGAAAGTGTTCTTGGTTCCCAATCTTGAAAAGAATGGAGACAGTTGTGAGAATC
387 TCCTAATGAAGGGAATGTGTTCTTGGTTCCCAATCTTGAAAAGAA-AGAGACTGTTGCGAGAATC
* * * *
1957417 GATGCTGGTCATATTTAAGAGATA
451 GATGCTTGTCTTATTTAAGGGATG
* * *
1957441 AATTTTGATTATAAGGAAAATAGGGCAAAGAAAAGTTTTCCATCCAAAAGAAAATCATCAATATC
1 AATTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATC
* * * * *
1957506 ATTTATCCT-ATCGAGAAGATTGTGTTTATAGTGCCTAATCACAAATTAAATGAAGATCATTACT
66 ATTTATCCTAAT-GAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATTATTACT
* * * * ** *
1957570 GGAATCCATGTTTGACTCATGTGAGTTACGAACTTATACTTTACAAAAATTGGTGAGAAGAAAGC
130 AGAATCCATATTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGAGAAGAAAGC
* * * * * *
1957635 CTTTCTTGCGAAACCAAAGCATCAACATCGTCTATCCTAATGAGAAGACTATGTTTATGTTGCCT
195 CTTTCTTGCAAAACCAAAGCATCAATATCATGTATCCTTATGAGAAGACTATGTTTATGGTGCCT
* * * * * *
1957700 AATCTTAAAAAGAGTGGGGATTAGGAAGACTATTCATGTTTGTCATT-TTTAAGAGACAAACTTT
260 AATCCTGAAAAGAAT-GGGATTAGTATGAGTATTCATGTTTGTC-TTATTTAAGAGACAAACTTT
* ** * *
1957764 GATTCTATCAAAAATGGTAAAAAGAAAAGCTTTTCTTGC-AGCACCAAAGCATCAACGTCTTGTA
323 GATTCTATCAAAAACGGTTGAAAGAAAAGCTTTTCTTGCGA-CACCAAAGCATCAATGTCATGTA
** * * * *
1957828 TCCTAATGAAGAAAATGTGTTCTTAGTTCCCAATCTTGAAAAGAAGGGTGA-TAGTTGCTAGAAT
387 TCCTAATGAAGGGAATGTGTTCTTGGTTCCCAATCTTGAAAAGAA-AGAGACT-GTTGCGAGAAT
**
1957892 CGATGCTTGTGATATTTAAGGGATG
450 CGATGCTTGTCTTATTTAAGGGATG
** *
1957917 AATTTTTG-TTTTAAGGAAAATAGGATAAAGAAAAGATTTCCATGCAAAAAAAAATCATCAATAT
1 AA-TTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATAT
* * * * * *
1957981 CATTTATCCTAATGAGGAGAATATGTTTATGGTACCTAATCACAAAATTAATGAATATCATTACT
65 CATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATTATTACT
* * * ** *
1958046 AGAATCCATGTTTGTCTCATTTGAGGCACAAACTTAGACTTTATAAAAAAAAAGG-G-TAAGAAA
130 AGAATCCATATTTGTCTCATTTGAGGCACGAACTTAGAC-TT-TACAAAAATTGGTGAGAAGAAA
* * * *
1958109 GCCTTTCTTGCGAAACTAATGCATCAATATCACGTATCCTTATGAGAAGACTATGTTTATGGTGC
193 GCCTTTCTTGCAAAACCAAAGCATCAATATCATGTATCCTTATGAGAAGACTATGTTTATGGTGC
* * * * * * * *
1958174 TTAATCTTGAAAAGAATAAGGATTAGTATGAGTATTAATATTTGTCTTGTTTAAGAGATAAATTT
258 CTAATCCTGAAAAGAAT-GGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTT
* * * *
1958239 TGATTCTATCCAAAACGGTGGAAAGATAAGCTTTTCTTGCAACACCAAAGCATCAATGTCATGTA
322 TGATTCTATCAAAAACGGTTGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTA
* * * *
1958304 TCCTAATGAAGGGAAGGTGTTCTTGGTTGCCAATTTTGAAAAGAATGGAGACTGTTTGCGAGAAT
387 TCCTAATGAAGGGAATGTGTTCTTGGTTCCCAATCTTGAAAAGAA-AGAGACTG-TTGCGAGAAT
* *
1958369 CGATGCATGTTTTATTTAAGGGAT-
450 CGATGCTTGTCTTATTTAAGGGATG
* * * *
1958393 AACTTTGATTTTAAGGAAAATATGGCAAAGAGAAGATTTCCATGCAAAAGAAAATCTTCAATATC
1 AATTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATC
* * * * * *
1958458 GTTTATCCTAATGAGGAGAATGTGTTTATAGTGCTTAATCACAAAAGGAAAGAAGA-TCTTGCTA
66 ATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATTATTACTA
* * * * *
1958522 GAATCTATATTTGTCTCACTTGAGCCACGAACATAGACTTTACAAAAATTGGTGAGAAGAAAGCT
131 GAATCCATATTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGAGAAGAAAGCC
* * * * *
1958587 TTTCTGGCAAAACCAAAGCATCAATATCCTGTA-CTCTTATGAGAAAACTAAGTTTTTGGTGCCT
196 TTTCTTGCAAAACCAAAGCATCAATATCATGTATC-CTTATGAGAAGACTATGTTTATGGTGCCT
* * *** **
1958651 AATCCTGAAACGAATGGGCATTAGTATGAGTATTCATGTTGAAAAGAATGGAGACTGTTGGCGAG
260 AATCCTGAAAAGAATGGG-ATTAGTATGAGTATTCATGTT----TG--T-CTTA-T-TT-AAGAG
** * ** * *
1958716 AATCGATGCTTGTCTTATT-TAAAGGATAACTTTGATTTTAAGGAAAATATGGCAAAGAAAAGAT
314 -A-C-AAAC-T-T-TGATTCT--ATCA-AA-----A----ACGG----T-T-G-AAAGAAAAGCT
* * * * ** * * * * *
1958780 TTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATG-AGGAGAATCTGTT-TATGGTGCC
354 TTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAATGAAGG-GAATGTGTTCT-TGGTTCC
* * * * * * ** * * ** * *
1958843 TAATC-AGAAAATGAATGAAGATCT-TAG-TAGAATCTATATTTGTATCATTCGAGGTACG
417 CAATCTTGAAAA-GAAAG-AGA-CTGTTGCGAGAATCGATGCTTGTCTTATTTAAGGGATG
** * * * * * * ** *
1958901 AACATAGACTTTACA-G-AAAT-TGG-TAAG-AAAGCTTTTC-TGGCAAAACCAAAGCATCAATA
1 AATTTTGATTTTA-AGGAAAATAGGGCAAAGAAAAGATTTCCAT-GCAAAAGAAAATCATCAATA
* * * * * ** * * * * * *
1958960 TCCTGTATCCTTACGA-GAAAACTAAGTTTTTGGTGCCTAATC-CTGAAACGAATG-GGCATTAG
64 TCATTTATCCTAATGAGGAGAA-TGTGTTTATAGTGCCTAATCAC-AAAATGAATGAAG-ATTAT
* * * * * * * * * *
1959022 TA-TGAGTATTCATGTTTGTTTTATTTAAGAG-ACAAAATTTGA-TTCTATCAAAAA-CGGTTGA
126 TACT-AGAATCCATATTTGTCTCATTTGAG-GCACGAACTTAGACTT-TA-CAAAAATTGG-TGA
* * * * * * * * * * *
1959083 AAAAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTACCCTAATGA-AGGGAATGTGTT
186 GAAGAAAGCCTTTCTTGCAAAACCAAAGCATCAATATCATGTATCCTTATGAGA-AGACTATGTT
* * * * * * * * *
1959147 TTTGGTTCCCAAT-CTAGAAAAAAAAGGAGACT-GT-TGCGAGCA-TCAATGCTTGCCTTATTTA
250 TATGGTGCCTAATCCT-GAAAAGAATGG-GATTAGTAT--GAGTATTC-ATGTTTGTCTTATTTA
* ** * * * * * * * * * ** *
1959208 AGGGATGAATTTTGATTTTAATGAAAATAAGG--CAAAGAAAAGATTTCCATG-GAAAAGAAAAT
310 AGAGACAAACTTTGATTCT-ATCAAAA-ACGGTTGAAAGAAAAGCTTTTCTTGCG-ACACCAAAG
* * * * * * * * ** *
1959270 CATCAATATCATTTATCGTAACG-AGGAGAATATGTT-TATAGTGCCGAATC-ACAAAATGAATG
372 CATCAATGTCATGTATCCTAATGAAGG-GAATGTGTTCT-TGGTTCCCAATCTTGAAAA-GAAAG
* * * ** * * * *
1959332 AAGA-TCATTACTAGAATCCTTGTTTGTCTTATTTGAGGCACG
434 -AGACT-GTTGCGAGAATCGATGCTTGTCTTATTTAAGGGATG
* ** * * ** * * * ** * *
1959374 AACTAAGACTTTATA--AAAATTGGTTAGAAG-AAAGCCTTT-CTTGCGAAACCAAAGCGTC---
1 AATTTTGATTTTA-AGGAAAATAGGGCA-AAGAAAAG-ATTTCCATGCAAAAGAAAATCATCAAT
* * * *
1959432 ATC---TATCCTAATGAGAAGACTATGTTTAT-GCTGCCTAATC-CTGAAAA-GAAT-AGGGATT
63 ATCATTTATCCTAATGAGGAGAATGTGTTTATAG-TGCCTAATCAC--AAAATGAATGA-AGATT
* * * * * *
1959490 AGTA-T-GACTATTCATGTTTGTCAT-ATTTAAGAG-A-TAAGCTTTGA-TTCTATCAAAAATT-
124 ATTACTAGA--ATCCATATTTGTC-TCATTTGAG-GCACGAA-CTTAGACTT-TA-CAAAAATTG
* * * * *** * * * * * * *
1959548 ATTAAAAGAAAAGCTTTTCTTGCGGCACCCAAGCATTATTGTCAAGTATCCTAATGA-AAGGAAT
182 GTGAGAAG-AAAGCCTTTCTTGCAAAACCAAAGCATCAATATCATGTATCCTTATGAGAA-GACT
* * * * * * * * * * * *
1959612 GTGTTCT-TGGTTCCCAATCATGAAAATAGTGGAGA-CAGTTCTGAG-AATCGATGCTGGTCATA
245 ATGTT-TATGGTGCCTAATCCTGAAAAGAATGG-GATTAG-TATGAGTATTC-ATGTTTGTCTTA
* ** * ** * * * * *
1959674 TTTAAGAGA-TATTTTTGATTTTAAGGAAAATA-GG--GAAAAGAAAAG-TTTTCCATCCAAAAG
306 TTTAAGAGACAAACTTTGATTCT-ATCAAAA-ACGGTTG-AAAGAAAAGCTTTT-CTTGCGACAC
* * * * * * * * **
1959734 AAAATCATCAATATCATTTATCCT-ATCG-AGGAGATTGTGTT-TATAGTACCTAATC-ACAAAT
367 CAAAGCATCAATGTCATGTATCCTAAT-GAAGG-GAATGTGTTCT-TGGTTCCCAATCTTGAAA-
* * * * * * * * * * ** *
1959795 TGAATGAAGA-TCATTACAAGAATCCATGTTTGACTCATTTGAGTTACG
428 AGAAAG-AGACT-GTTGCGAGAATCGATGCTTGTCTTATTTAAGGGATG
* ** * * * * * ** *
1959843 AACTTACACTTTATA--AAAATTGGTG-AGAAG-AAAGCCTTT-CTTGCGAAACTAAAGCATCAA
1 AATTTTGATTTTA-AGGAAAATAGG-GCA-AAGAAAAG-ATTTCCATGCAAAAGAAAATCATCAA
* * * * * ** ** **
1959903 CATCATCTATCCTAATG-GGAAGACTATATTTATTTTGCCTAATCTTGAAAA-GAATGGGGATTA
62 TATCATTTATCCTAATGAGG-AGAATGTGTTTATAGTGCCTAATC-ACAAAATGAATGAAGATTA
** * * * * * **
1959966 GGA-T-GACTATTCATGTTTGTCAT-TTTTAAGAG-AC-AAGCTTTGGTTTTATCAAAAA-TGGT
125 TTACTAGA--ATCCATATTTGTC-TCATTTGAG-GCACGAA-CTTAGACTTTA-CAAAAATTGGT
* * ** ** * * * * *
1960025 AAAAAGAAAAGGTTTTCTTGCAGCACCAAAGCATCAATGTTATGTATCCTAATGTAGAA-AATGT
184 GAGAAG-AAAGCCTTTCTTGCAAAACCAAAGCATCAATATCATGTATCCTTATG-AGAAGACTAT
* * * * * * * * **
1960089 GTTCT-TGATTCCCAATCATGAAAAGAAAGGAGGCAATT-GCTA-GA--ATTGACGCTTGTGATA
247 GTT-TATGGTGCCTAATCCTGAAAAG-AATG-GG--ATTAG-TATGAGTATTCATGTTTGTCTTA
* * ** * * ** * * * * * * * **
1960149 TTTCAGGGATGAA-TTTTATTTTAAGAAAAATAGG--GCAAAGTAAAGATTTCCATGCAAAAGAA
306 TTTAAGAGACAAACTTTGATTCTATCAAAAA-CGGTTG-AAAGAAAAGCTTTTCTTGCGACACCA
* * * * * * * * ** *
1960211 AATCATCAATATCATTTATCTTAATG-AGGAGAATATGTT-TATAGTACCTAATC-ACAAAATTA
369 AAGCATCAATGTCATGTATCCTAATGAAGG-GAATGTGTTCT-TGGTTCCCAATCTTGAAAA-GA
* * * * * * * * * *
1960273 ATGA-ATATAATTACTAGATTCCATGTTTGTCTTATTTAAGGCACG
431 AAGAGA-CT-GTTGCGAGAATCGATGCTTGTCTTATTTAAGGGATG
* * * * * ** * * ** * *
1960318 AACTTAGACTTTACA--AAAATTGAG-AGGGAGAAAGCCTTT-CTTGGGAAAG-TAATGCGTCAA
1 AATTTTGATTTTA-AGGAAAATAGGGCAAAGA-AAAG-ATTTCCATGCAAAAGAAAAT-CATCAA
** * * * * * *
1960378 TATCACGTATCCTTATGAGAAGACTATGTTTATGGTGCCTAATC-CTGAAA-GAAT-AAGGATTA
62 TATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCAC-AAAATGAATGAA-GATTA
* * ** * * * * * * *
1960440 GTA-TATGTATTAATGTTTGTCTTATTTAAGAG-ACAAATTTTGA-TTCTATCCAAAA-TGGTG-
125 TTACTA-GAATCCATATTTGTCTCATTTGAG-GCACGAACTTAGACTT-TA-CAAAAATTGGTGA
** * * * * * * * * * *
1960500 GAAAGAAAAGTTTTTCTTGCGACACCAAAGCATCAATGTCTTGTATCCTAAAGACAGGAATGTGT
186 G-AAG-AAAGCCTTTCTTGCAAAACCAAAGCATCAATATCATGTATCCTTATGAGAAGACTATGT
* * * * *
1960565 TCT-TGGTTG-CTAATCTTGAAAAGAATGGAGACT-GT-TGGCAAG-AATCGATGCTTGTTTTAT
249 T-TATGG-TGCCTAATCCTGAAAAGAATGG-GATTAGTAT-G--AGTATTC-ATGTTTGTCTTAT
* * * * ** * * * * * * * * * **
1960625 TTAAGGGA-TAACTTTGGTTTTAAGGAAAATATGG--CAAAGAACAGATGTCCATGCAAAAGAAA
307 TTAAGAGACAAACTTTGATTCT-ATCAAAA-ACGGTTGAAAGAAAAGCTTTTCTTGCGACACCAA
* * *
1960687 ATCATCAATATCATTTATCCTAATG-AGGAGAACGTGTTTATAGTACCTAATCACAAAAGCTTTT
370 AGCATCAATGTCATGTATCCTAATGAAGG-GAA--TG----T-G----T--T--------C--TT
* * * * * * * * * * * * *
1960751 GGTGCCTAATCCTGAAACGAATGGGCATTAG-TGTGACTATTC-ATGTTTGTTTTATTTAAGAGA
411 GGTTCCCAATCTTGAAAAGAAAGAG-ACT-GTTGCGA-GAATCGATGCTTGTCTTATTTAAGGGA
**
1960814 CA
473 TG
* * ** * * * * * ** * *
1960816 AAATTTGATTCT-ATCAAAA-ACGGTTG-AAAAAAAAGCTTGT-CTTGCGACACCAAAGCATAAA
1 AATTTTGATTTTAAGGAAAATA-GG--GCAAAGAAAAGATT-TCCATGCAAAAGAAAATCATCAA
* * * * * * * * * * * *
1960877 TGTCGTGTACCCTAATGAAGG-GAATGTGTTTTTAGTTCCCAATCTAGAAAA-GAAAGGAGACTG
62 TATCATTTATCCTAATG-AGGAGAATGTGTTTATAGTGCCTAATC-ACAAAATGAATGAAGATTA
* * * ** * * * * * * * *
1960940 TTGCGAGAATCAATGCTTGCCTTATTTAAGAG-ATGAATTTTGATTTTA-AGGAAAATAGG-GCA
125 TTACTAGAATCCATATTTGTCTCATTTGAG-GCACGAACTTAGACTTTACA--AAAATTGGTG-A
* * ** * * * * *
1961002 -AAGAAAAG-TTTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATATGT
186 GAAG-AAAGCCTTT-CTTGCAAAACCAAAGCATCAATATCATGTATCCTTATGAGAAGACTATGT
* * * * * * * *
1961065 TTATAGTACCTAATCAC--AAAATTAAT-GAATATCGATATTAGAATCCATGTTTGTCTTATTT-
249 TTATGGTGCCTAATC-CTGAAAA-GAATGGGAT-TAG-TATGAGTATTCATGTTTGTCTTATTTA
* * ** * * * **
1961126 -GAGGCATGAACTTAGACTT-TA-CAAAAA---TTGAGGGGGAGAAAGCCTTTCTTGTGAAAGTA
310 AGAGACA--AACTTTGA-TTCTATCAAAAACGGTTGA--AAGA-AAAGCTTTTCTTGCGACACCA
* * ** * * * * * * * *
1961185 ATGCATCAATATCACATATCCTTATG-AGAAGACTATGTT-TATGATGCCTAATCCTG-AAAGAA
369 AAGCATCAATGTCATGTATCCTAATGAAG-GGAATGTGTTCT-TGGTTCCCAATCTTGAAAAGAA
* * ** * *
1961247 TA-AGGATTAGTAT--GAGTATTAATGTTTGTCTTATTTAAGAGG-TA
432 -AGA-GACT-GT-TGCGAGAATCGATGCTTGTCTTATTTAAG-GGATG
*** * * * * * * ** * *
1961291 AATTTTGATTTTATCCAAAAT-GGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGT
1 AATTTTGATTTTAAGGAAAATAGG-GCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATAT
* * ** * * *
1961355 CATGTATCCTAA-GAAGG-GAATGTGTTCT-TGGTTGCC-AATCTTGAAAA-GAATGGAGACTGT
65 CATTTATCCTAATG-AGGAGAATGTGTT-TATAG-TGCCTAATC-ACAAAATGAATGAAGATTAT
* * * ** * * * * * * *
1961415 TGGCGAGAATCGATGCTTATCTTATTTAAGGGA-TAACATT-GAATTTA-AGGAAAATATGG-CA
126 T-ACTAGAATCCATATTTGTCTCATTTGAGGCACGAAC-TTAGACTTTACA--AAAAT-TGGTGA
** * ** * * * * * *
1961476 -AAGAAAAGATTTTCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTT
186 GAAG-AAAGCCTTTCTTGCAAAACCAAAGCATCAATATCATGTATCCTTATGAGAAGACTATGTT
* * * * * * *
1961540 TATAGCGCCTAATCAC--AAAAGGAATGAAGATCT--TACT-AG-AATCTATATTTGTGTCATTT
250 TATGGTGCCTAATC-CTGAAAA-GAATG-GGAT-TAGTA-TGAGTATTC-ATGTTTGTCTTATTT
* * * * * *
1961599 GAG-GCACGAA-TATAGACTT-TA-CAAAAATTGG-TGAGAAG-AAAGCTTTTCTGGCGAAACCA
309 AAGAG-ACAAACT-TTGA-TTCTATCAAAAA-CGGTTGA-AAGAAAAGCTTTTCTTGCGACACCA
* * * * ** ** * * *
1961658 AAGCATCAATCTCCTATATCCTTATG-AGAAAACTAAGCTT-TTGGTGCCTAATCCT-AAAACGA
369 AAGCATCAATGTCATGTATCCTAATGAAGGGAA-TGTG-TTCTTGGTTCCCAATCTTGAAAA-GA
* * * ** * * * * *
1961720 ATGGGCATTAGTAT--GAGTTTTC-ATGTTTGTTTTTTTTAAGAGACAG
431 AAGAG-ACT-GT-TGCGAG-AATCGATGCTTGTCTTATTTAAGGGA-TG
* * ** * * * * * * ** *
1961766 AA-TTTAATTCT-ATCAAAA-ACGGTTG-AAAAAAAAGCTTTTCTTGCGACACCAAAGCATCAAT
1 AATTTTGATTTTAAGGAAAATA-GG--GCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAAT
* * * * * * * * * * * *
1961827 GTCATGTACCCTAATGAAGG-GAATATGTTTTTGGTTCCCAATCTATAAAA-GAATGGAGACTGT
63 ATCATTTATCCTAATG-AGGAGAATGTGTTTATAGTGCCTAATC-ACAAAATGAATGAAGATTAT
** * * ** * * * * * * * * *
1961890 TAGGACAATCAATGCTTGCCTTATTTAAGGGATGAATTTTGATTTTA-AGGAAAATAGG-GCA-A
126 TACTAGAATCCATATTTGTCTCATTTGAGGCACGAACTTAGACTTTACA--AAAATTGGTG-AGA
* * ** * * * * * * * *
1961952 AGAAAAG-ATTTCCATGCAAAAGAAAATCATCATTATCATTTATCCTAACGAGGAGAATGTGTTT
188 AG-AAAGCCTTT-CTTGCAAAACCAAAGCATCAATATCATGTATCCTTATGAGAAGACTATGTTT
* ** * * * *
1962016 ATAGTGCCTAATCAC--AAAATGAATTAAGAACATTACTA-G-GT-TCCTTGTTTGTCTTATTTG
251 ATGGTGCCTAATC-CTGAAAA-GAA-T--G-GGATTAGTATGAGTATTCATGTTTGTCTTATTTA
* * ** * * * *
1962076 AG-GCACAAACTTAGACTT-GAT-AAAAATTAGTT-AGAAG-AAAGCCTTTCTTGCAAAACGAAA
310 AGAG-ACAAACTTTGA-TTCTATCAAAAA-CGGTTGA-AAGAAAAGCTTTTCTTGCGACACCAAA
** * * * * * * *
1962136 GCATCAACATCATCTATCTTAATG-AGAGGACTATGTT-TTTGTTGCCTAATCTTGAAAAGAATT
371 GCATCAATGTCATGTATCCTAATGAAG-GGAATGTGTTCTTGGTT-CCCAATCTTGAAAAGAA-A
* * * * * * *
1962199 GGGATTAGTAT--GACTATTC-ATGTTTGTCATATTTAAGAGAT-
433 GAGACT-GT-TGCGA-GAATCGATGCTTGTCTTATTTAAGGGATG
* * ** * * * * * *** *** *
1962240 AAGTTTTCATTCT-ATCAAAA-ACGATGAAAAGAAAAGCTTTTCTTGCGGCACCCAAGCATCAAT
1 AA-TTTTGATTTTAAGGAAAATA-G-GGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAAT
* * * * * ** *
1962303 GTCATGTATCCTAATGAAGG-GAATGTGTTCT-TGGTTCCCAATCTTGAAAA-GAATGGAGA-TA
63 ATCATTTATCCTAATG-AGGAGAATGTGTT-TATAGTGCCTAATC-ACAAAATGAATGAAGATTA
* * ** * * * * * * *
1962364 GTT-GTGAGAATCGATGGTGGTCAT-ATTTAAGAG-A-TAATTTTTGATTTTA-AGGAAAATAGG
125 -TTACT-AGAATCCATATTTGTC-TCATTTGAG-GCACGAA-CTTAGACTTTACA--AAAATTGG
* * * ** * * * * *
1962424 -GCA-AAGAAAAG-TTTTCCATCCAAAAGAAAATCATCATTATCATTTATCC-TATCGAGGAGAT
183 TG-AGAAG-AAAGCCTTT-CTTGCAAAACCAAAGCATCAATATCATGTATCCTTAT-GAGAAGAC
* * * * * * ** * * * *
1962485 TGTGTTTATAGTGCCTAAT-C-AAAAATTGAATGAAGATCATTACAAGCATCCATGTTTGACTCA
244 TATGTTTATGGTGCCTAATCCTGAAAA--GAATG-GGATTAGTATGAGTATTCATGTTTGTCTTA
* ** * ** ** * *
1962548 TTTGAGTTACAAACCTACACTT-TA-CAAAAA-TTTGTGAGAAG-AAAGCCTTTCTTGCGAAACC
306 TTTAAGAGACAAACTTTGA-TTCTATCAAAAACGGT-TGA-AAGAAAAGCTTTTCTTGCGACACC
** ** * * * * * *
1962609 AAAGCATCAACATTGTCTATCCTAATG-AGAAGACTATGTT-TAT-GTTGCCTAATCTTAAAAAG
368 AAAGCATCAATGTCATGTATCCTAATGAAG-GGAATGTGTTCT-TGGTT-CCCAATCTTGAAAAG
* * * ** * * *
1962671 AATG-G--GGATTACGATGACTATTAATGCTTGTCATT-TTTGAGAGA-C
430 AAAGAGACTG-TTGCGA-GA--ATCGATGCTTGTC-TTATTTAAGGGATG
* * *** ** * * * ** ** * *
1962716 AAGCTTTGATTCTATCAAAAAT-GGTAAAAAGAAAAGTTTTTCTTGCAGCACCAAAGCATCAATG
1 AA-TTTTGATTTTAAGGAAAATAGG-GCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATA
* * * * * * **
1962780 TCATGTATCCTAATGAAGAAAATGTGTTCT-TGGTTCCTAATCTTGA-AAAAAG-ATG-AGACAA
64 TCATTTATCCTAATGAGGAGAATGTGTT-TATAGTGCCTAATC---ACAAAATGAATGAAGATTA
** * * * * * * * ** * *
1962841 TTGTTAGAAT-CAGAGCTTGTGAT-ATTTAAGGGATGAATTTTTATTTTA-AGGAAAA-TAGTGC
125 TTACTAGAATCCATA-TTTGT-CTCATTTGAGGCACGAACTTAGACTTTACA--AAAATTGGTG-
** * ** * ** ** * * * *
1962902 A-AAGAAAGGATTTTCATGCAAAAGAAAATG-ATCAATATCATTTATCCCAACAAGGAGAATGTT
185 AGAAGAAA-GCCTTTCTTGCAAAACCAAA-GCATCAATATCATGTATCCTTATGAGAAGACTATG
** * * * * * * * *
1962965 TTTAAAGTTCCTAATCAC--AAAATGAATGAAGATCATTACT-AGAATCCTTGTTTGTCTCATTT
248 TTTATGGTGCCTAATC-CTGAAAA-GAATG-GGATTAGTA-TGAGTATTCATGTTTGTCTTATTT
* * * ** * * * *
1963027 GAG-GCACGAACTTAGACTT-TATCAAAATTGG-TCAGAAG-AAAGCGTTTCTTGTGAAACCAAA
309 AAGAG-ACAAACTTTGA-TTCTATCAAAAACGGTTGA-AAGAAAAGCTTTTCTTGCGACACCAAA
* ** * * * * *
1963088 GCATTAACATCATCTATCCTAATG--GGAAGACTATGTT-TAT-GTTGCCTAATCTTAAAAAGAA
371 GCATCAATGTCATGTATCCTAATGAAGG--GAATGTGTTCT-TGGTT-CCCAATCTTGAAAAGAA
* * * ** * * *
1963149 TGGGGA-T-TAG-GATGACTATTAATGTTTGTCATT-TTTAAGAGA-C
432 -AGAGACTGTTGCGA-GA--ATCGATGCTTGTC-TTATTTAAGGGATG
* * *** ** * * ** ** *
1963192 AAGCTTTGATTCTATCAAAAAT-GGTAAAAAGAAAAGCCTTT-CTTGCAAACTAATGTGC--CGA
1 AA-TTTTGATTTTAAGGAAAATAGG-GCAAAGAAAAG-ATTTCCATGCAAAAGAAAAT-CATCAA
* * * ** * * * * **
1963253 TATCGTGTATCCTTATGACAAGACTATGCTTATGGTGCCTAATCTTGAAAA-GAAT-AAGGATTA
62 TATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATC-ACAAAATGAATGAA-GATTA
* * ** * * * * * * * *
1963316 GTA-TGAGTATTAATGTTTGTCTTATTTAAGAG-ACAAATTTTGA-TTCTATCTAAAA-CGGTG-
125 TTACT-AGAATCCATATTTGTCTCATTTGAG-GCACGAACTTAGACTT-TA-CAAAAATTGGTGA
** * * * * ***
1963376 GAAAGAAAAG-CTTTCCTTGTGACACCAAAGCATCAATGTCATGTATCCTAATGA-AGGGAAGGT
186 G-AAG-AAAGCCTTT-CTTGCAAAACCAAAGCATCAATATCATGTATCCTTATGAGA-AGACTAT
* ** * ** ** ** ** * ***
1963439 GTTTTTGGTTGCC-AAT-AAGAGATAA-ATTTTGATTCTA-TCCAAAAGGGTGGAAAGAAAAG-C
247 GTTTATGG-TGCCTAATCCTGA-A-AAGAATGGGA-T-TAGT--ATGAGTAT-TCATG-TTTGTC
** * * ** ** ** *** * ** * *
1963499 TT-TGCTTCTGACACCAAAGCATCAATGTC-AT-GTATCCTAATGAAGGGAATGTGTTTTTGGTT
303 TTAT--TTAAGAGA-CAAA-CTTTGAT-TCTATCAAAAACGGTTGAA-AGAA-AAGCTTTT-CTT
* * * * * * *
1963561 GCGA-ATCTTGAAAAGAATGGAGACTGTTGGCAAGAATCGATGCTTGTTTTATTTAAGGGATAAC
360 GCGACA-C---CAAAGCAT-CA-A-TG-T--CATG--T--AT-C-----CTAATGAAGGG--AA-
* ** * * * * * * *
1963625 TTTGATT-TTAAGG---AAAATCTGGCAAATAAA-AGATTTGCATGCAAAAGAAAATC-AT-CAA
402 TGTG-TTCTT--GGTTCCCAATCTTGAAAAGAAAGAGA-CTG-TTGC----GAGAATCGATGC-T
* *
1963683 TATCATTTATCCTAATGAGGA-G
457 TGTC--TTAT-TTAA-G-GGATG
* *** *
1963705 AA-TGTG-TTTATAATGCCTAATCA---CAAAAGGAATGAAGATCTT--A--C--TAG--AATCT
1 AATTTTGATTT-TAA-GGAAAAT-AGGGC-AAA-GAA--AAGAT-TTCCATGCAAAAGAAAATC-
*** * * * * * ** * ***** ** * * * **
1963757 ATGTTTGTC--TCAT-TTAAGGCACGA-ACATAGACTTTACAAAAATTGGTGAGAAGAAAGCTTT
57 ATCAATATCATTTATCCTAATG-AGGAGA-AT-GTGTTTATAGTGCCTAATCACAA-AATG-AAT
* * * * * * * * * * * * * * * * *
1963818 TATGGTGA-AACCAAAGCATCAATATCCTGTATCCTTGTGAGGTAACTAAGTTTTTGGTGCCTAA
117 GAAGATTATTA-C-TAGAATCCATAT-TTGTCTCATT-TGAGG-CACGAA---CTT--AGACT-T
* * * *** * ** * * **
1963882 TCCTGAAATGAATGGGCATTAGTATGAGTATTAATATTTGTTTTATTTAAAAGACAAA-CTTTGA
171 TAC--AAA--AATTGG--TGAG-A--AG-A--AA-GCCT-TTCT-TGCAAAA-CCAAAGCATCAA
** * * ** * * ** ** * * * * * * *
1963946 T-TCTATCAAAAACGGCTGAAAAAAAG-CT-TTTCTTGCGGCACCAAAGCAT-CAATGTCAT-GT
220 TATC-AT--GTATC--CTTATGAGAAGACTATGT-TTATGGTGCCTAATCCTGAAAAG-AATGGG
* * * * * * * * *
1964006 ATCCTA--ATGAAGGGAAT-GTGTTTTTGGTTGCCA-ATAAGAGATAAATTTTGATTCTATCCAA
278 AT--TAGTATG-A-GTATTCATGTTTGT-CTT---ATTTAAGAGACAAACTTTGATTCTATCAAA
* * * * *
1964067 AA-TGATGAAAAGAAAAGCTTTTCTTACGACACCAAAGCATCAATGTCATGTATCCTAAAGAAAG
335 AACGGTTG-AAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAATGAAGG
* * * * * * * * * * **
1964131 GAATGCGTTATGGGTTCCCATTATTAAAAAGAATGGAGACAGTTGCAAGAATCAATGCTTGTGAT
399 GAATGTGTTCTTGGTTCCCAATCTTGAAAAGAA-AGAGACTGTTGCGAGAATCGATGCTTGTCTT
* *
1964196 ATTGAAAGGATG
463 ATTTAAGGGATG
* ** *
1964208 AATTTTGA-TTT--------T------AAGAAAAGATTTCAACACAAAAAAAAATCATCAATATC
1 AATTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATC
* ** * * *
1964258 AATTATCCTAATGAGGAGAATGTGTTTATAGCCCCTAATCATAAAAGGAATG-AG-TGTCATTAA
66 ATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGAT-T-ATTAC
* * * * * *** *
1964321 TAGAATCCATGTCTGTCTCATTTGGGGCATGAACTTACACTTTATGGAAATTGGTGGGAAGAAAG
129 TAGAATCCATATTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGAGAAGAAAG
* * * * * * ** * * *
1964386 CTTTTCTTACAAAACAAAATCGTAAATATCGCGTATCCTTTTGAGACGACTATGTTTACGGTGCC
194 CCTTTCTTGCAAAACCAAAGCATCAATATCATGTATCCTTATGAGAAGACTATGTTTATGGTGCC
* * *
1964451 TAATCTTGAAAAGAATAGGGATTAGTATGAGTATTAATGTTTGTCTTATTAAAGAGACAAACTTT
259 TAATCCTGAAAAGAAT-GGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTT
* * *
1964516 GTTTCTATAAAAAACAGTTGAACA-AAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTA
323 GATTCTATCAAAAACGGTTGAA-AGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTA
* * * * * * *
1964580 TCCTAAGGAAGGGAATGTGTTCTGGGTTCCCAATCTAGAAAGGAGTAGAGA-TAGTTACGACAAT
387 TCCTAATGAAGGGAATGTGTTCTTGGTTCCCAATCTTGAAAAGA-AAGAGACT-GTTGCGAGAAT
**
1964644 CGATGCTTGTGATATTTAAGGGATG
450 CGATGCTTGTCTTATTTAAGGGATG
* * * *
1964669 AATTTGGATTTTAGGGAAAATAGGGCAAAGAAAAGATTTCAATGCAAACA-AAAATCCTCAATAT
1 AATTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAA-AGAAAATCATCAATAT
* * * *
1964733 CAATTATACTAATGAGGAGAATGTGTTTATTA-TGCCTAATCACAAAATGAATGAATATCATTAC
65 CATTTATCCTAATGAGGAGAATGTGTTTA-TAGTGCCTAATCACAAAATGAATGAAGATTATTAC
* * * * * *
1964797 TAGAATCCATGTTTGTCTCATTTGAGGCACAAACTTTGACTTTATAAAAAATTAGTGGGAAGAAA
129 TAGAATCCATATTTGTCTCATTTGAGGCACGAACTTAGACTTTA-CAAAAATTGGTGAGAAGAAA
* * * * * * * * * *
1964862 TCTTTTCGTACGAAACCAATGCGTCAATATCGTGTAACCTTATGAGAAGACTATGTTTATGGCGC
193 GCCTTTCTTGCAAAACCAAAGCATCAATATCATGTATCCTTATGAGAAGACTATGTTTATGGTGC
* *
1964927 CTAATCCTGAAAAGAATAGGGATTAGTATGAGTATTAATGTTTGTCTTATTAAAGAGACAAACTT
258 CTAATCCTGAAAAGAAT-GGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTT
* * ** * * *
1964992 TGTTTCTATCAAGAACAATTGAAAGAAAAGCTTTCCTTGTGACACCAAAGCTTCAATGTCATGTA
322 TGATTCTATCAAAAACGGTTGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTA
* * * *
1965057 TCCTAATGAAGGGAATGTGTTCTTAGTTCCCAATCTTGAAAAGAATGGAGACAGTTACGAGAATC
387 TCCTAATGAAGGGAATGTGTTCTTGGTTCCCAATCTTGAAAAGAA-AGAGACTGTTGCGAGAATC
* *
1965122 GATGCTTGTCATATTTAAGAGATG
451 GATGCTTGTCTTATTTAAGGGATG
* * * *
1965146 AATTTTGATTTTAAGGAAAATAGGGCATAGGAATGATTTCTATGCAAAAGAAAATCATCAATATC
1 AATTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATC
* * * * * * ** *
1965211 TTTTATCCTAATGAGGAGAATGTGTTTTTCGTGCCTATTCACAAAATGTATGTAGATCGTTAGTA
66 ATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATTATTACTA
* * * *
1965276 GAATCCATATTTGTCTCGTTTGAAGCGCCAACTTAGACTTTACAAAAATTGGTTG-GAAGAAAGC
131 GAATCCATATTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGG-TGAGAAGAAAGC
* ** * *
1965340 CTTTCTTGGAAAACCAAAGTGTCATTATCATGTATCTTTATGAGAAGACTGA-GTTTATGGTGCC
195 CTTTCTTGCAAAACCAAAGCATCAATATCATGTATCCTTATGAGAAGACT-ATGTTTATGGTGCC
* * * * * *
1965404 TAATCAC-GAAAAAAATGGGGATTAGTATAAGTATTCATTTTTATTTTATTTAAGAGATAAACTT
259 TAATC-CTGAAAAGAAT-GGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTT
* * *
1965468 TGATTCTATCAAAAACGGTTGAAA-AGAAACCTTTTCTTGTGAC-CCTAAATCATCAATGTCATG
322 TGATTCTATCAAAAACGGTTGAAAGA-AAAGCTTTTCTTGCGACACC-AAAGCATCAATGTCATG
* * * * * * * * *
1965531 TATCCTAATGAAGGAAAAGTGTTTTTGGTCCCCAATC-TCAAAATGAATGGAGACCGTTACAAGA
385 TATCCTAATGAAGGGAATGTGTTCTTGGTTCCCAATCTTGAAAA-GAA-AGAGACTGTTGCGAGA
1965595 ATCGATGCTTGTCTTATTTAAGGGATG
448 ATCGATGCTTGTCTTATTTAAGGGATG
* * * *
1965622 AACTTTGATTTTAAAGAAAATAGGGGAAAGAAAAGATTTTCATGCAAAAG-AAATCCATCAATAT
1 AATTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAAT-CATCAATAT
* * * * ** * * *
1965686 CACTTATCCTATTTAGGAGAATGTGCTTATAGTTTCTAATCAAAAAATGAATGAAGATCATTAAT
65 CATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATTATTACT
* * * * *
1965751 AGAATCCACATTTGTCTCATTCGAGGCACGAACTTACACTTTACAAAAATAGGTGGGATA-AAAG
130 AGAATCCATATTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGAGA-AGAAAG
* * ** * ** * * * *
1965815 CCTTTCTTGTAAAACAAAAGCATCAATATTGTCTATCCGAATAAGGAGACTATGTTTATGGAGAC
194 CCTTTCTTGCAAAACCAAAGCATCAATATCATGTATCCTTATGAGAAGACTATGTTTATGGTGCC
* *
1965880 TAATCTTGAAAAGAATGGGGATTAGTATG-GCTATTCTTGTTTGTCTTATTTAAGAGACAAACTT
259 TAATCCTGAAAAGAAT-GGGATTAGTATGAG-TATTCATGTTTGTCTTATTTAAGAGACAAACTT
* * * *
1965944 CGATTCTATCAAAAATGG-TGAAAAGAAAA-CTTTTTCTGGCGACATCAAAGCATCAATGTCATG
322 TGATTCTATCAAAAACGGTTG-AAAGAAAAGC-TTTTCTTGCGACACCAAAGCATCAATGTCATG
* * * * * * * **
1966007 CATCCTAGTGAAGGGAAAGTGTTTTTGGTTCCTAATCTTGAAACGAATGGAGACTGTTTTGAGAA
385 TATCCTAATGAAGGGAATGTGTTCTTGGTTCCCAATCTTGAAAAGAA-AGAGACTGTTGCGAGAA
*
1966072 TAGATGCTTGTCTTATTTAAGGGATG
449 TCGATGCTTGTCTTATTTAAGGGATG
* * * *
1966098 AACTTTGATTTTTAGAAAAATAGGGCAAAGAAAAGATTT-CACGCAAAAG-AAATCCATCAATAT
1 AATTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAAT-CATCAATAT
* * *** * *
1966161 CATTTTTCCTAATTAGGAGAATGTGTTTATAGTTTTTAGTCA-AAAAGTGAATGAAGATCATTAC
65 CATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAA-TGAATGAAGATTATTAC
* * * * * *
1966225 TAGAATCCATGTTTGTCTCATTTGAGGCTCGAACTTACACTTTACAAAAATAGGTGGGACGAAAG
129 TAGAATCCATATTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGAGAAGAAAG
* * * * * * * *
1966290 CCTTTCTTGCAAAGCCAAAGCATTAATATCATCTATCCTAAAGAGGAGATTATGTTTATGGAGCC
194 CCTTTCTTGCAAAACCAAAGCATCAATATCATGTATCCTTATGAGAAGACTATGTTTATGGTGCC
* * * *
1966355 TAATCCTGAAAAGAATAGGGAATAATATG-GCTATTCTTGTTTGTCTTATTTAAGAGAC-AACCT
259 TAATCCTGAAAAGAAT-GGGATTAGTATGAG-TATTCATGTTTGTCTTATTTAAGAGACAAACTT
* * ** * * *
1966418 TGATTTTATCAAAAATGGCGGAAAGAAAA-CTTTTTCTTGTGACACCAAAGCATTAATGTCACGT
322 TGATTCTATCAAAAACGGTTGAAAGAAAAGC-TTTTCTTGCGACACCAAAGCATCAATGTCATGT
* * * * *
1966482 ATCCTAATGAAGGGAATGTGTTCTCGGTTCCCAATCATGAAAAGAATTGAGATTGTTACGAGAAT
386 ATCCTAATGAAGGGAATGTGTTCTTGGTTCCCAATCTTGAAAAGAA-AGAGACTGTTGCGAGAAT
* *
1966547 AGATGCTTCTCTTATTTAAGGGATG
450 CGATGCTTGTCTTATTTAAGGGATG
* * * * *
1966572 AATTTGGATTTTAAGAAAAATAGGGCAAAGGAAACATTTCCATGTAAAAGAAAATCATCAATATC
1 AATTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATC
* * * * *
1966637 ATTTACCCTAAAGAAGAGAATGTGTGTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTA
66 ATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATTATTACTA
* * * * * * * *
1966702 GAATCCATGTTTGACTGATTTGAGGTATGAATTTATACTTTACAAAAATTGGTGTGAAGAAAGCC
131 GAATCCATATTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGAGAAGAAAGCC
** * * * *
1966767 TTTCTTGTGAAACCAAAGCATCAATATCGTCTATCCTAATGAGAAGACTATGTTTATGGTGTCTA
196 TTTCTTGCAAAACCAAAGCATCAATATCATGTATCCTTATGAGAAGACTATGTTTATGGTGCCTA
* * * * * * * * *
1966832 ATCCTAAAAATAGTGGACATTAGTGTGACTATTGATGTTTGTCTTTTTTAAGAGACAAACTATGA
261 ATCCTGAAAAGAATGG-GATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGA
** * ** * *
1966897 TTCTAAGAAAAACGATTGAAAGAAAAGCTTTTCTTATGACACCAAAGCGTCAATGTCAT-TATCG
325 TTCTATCAAAAACGGTTGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCC
* * * * * * *
1966961 TAATGAAGGAAATGTCTTTTTAGTTCCCAATCTGGAAAAGAATGTAGACTGTTACGAGAATC-AC
390 TAATGAAGGGAATGTGTTCTTGGTTCCCAATCTTGAAAAGAAAG-AGACTGTTGCGAGAATCGA-
* * * *
1967025 TACTTGCCATATTTAAGGGATA
453 TGCTTGTCTTATTTAAGGGATG
* * * *
1967047 AACTTTGATTTTAAGGAAAATAGGGCAAAGGAAACATTTCCATGCAAAAGAAAATCATCAATGTC
1 AATTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATC
* * * ** *
1967112 ACTTACCCTAATGACGAGAATGTGTTTATTTTGCCTAATCACAAAATGAATGAAGATCATTACTA
66 ATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATTATTACTA
* * * *
1967177 GAATCGATGTTTGTCTCATTTGAGGCATGAACTT-GCACTTTACAAAAATTGGTGGGAAGAAAGC
131 GAATCCATATTTGTCTCATTTGAGGCACGAACTTAG-ACTTTACAAAAATTGGTGAGAAGAAAGC
** * * * * *
1967241 C-TTCATTGTGAAACCAAAGCATTACTATCATGTATCCATGTGAGAAGACTAAGTTTATGGTGCC
195 CTTTC-TTGCAAAACCAAAGCATCAATATCATGTATCCTTATGAGAAGACTATGTTTATGGTGCC
* * * * *
1967305 TAATCTTAAAAAGAATGGGATTAATATGACTATTCATGTTTGTCTTATTAAAGAGACAAACTTTG
259 TAATCCTGAAAAGAATGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTG
* * * *
1967370 ATTATATCAAAAACAGTTGAAAGGAAAGCTTTTCTTGTGACACCAAAGCATCAATGTCATGTATC
324 ATTCTATCAAAAACGGTTGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATC
* * * **
1967435 CTAATGAAGGGAATATGTTCTTGGTTCCCAATCTTGAAAATAAAGAAGAATGTTATGAGAATCGA
389 CTAATGAAGGGAATGTGTTCTTGGTTCCCAATCTTGAAAAGAAAG-AGACTGTTGCGAGAATCGA
* * *
1967500 TGTTTGTCATATTTAAGAGATG
453 TGCTTGTCTTATTTAAGGGATG
* * * * * * * *
1967522 AATTGTGA-TTTATGAAAAATAGGAG-AAAGAAAAGATTTCAACGCAAAATAAGATCATCACTAT
1 AATTTTGATTTTAAGGAAAATAGG-GCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATAT
* * * * * *
1967585 CATTTATCTTAACGAGGAGAATGCGTTTAGAGTGCCTAATCACAAAAGGAATGAAGATCATTACT
65 CATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATTATTACT
* * ** *
1967650 -G-A---A-A----TC-CATGTG-TG-ACTTA-TTTGA--TTACAAAAATTGG-GAGGAAGAAAG
130 AGAATCCATATTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGA-GAAGAAAG
* ** * * * * *
1967698 CCTTTATTGTGAAACCAAAGCATCAATGTCGTTTATCCCTACGAGAAGACTATGTTTATGGTGCC
194 CCTTTCTTGCAAAACCAAAGCATCAATATCATGTATCCTTATGAGAAGACTATGTTTATGGTGCC
* * * *
1967763 TAATCTTGAAAATAATGGGGATTAGTATGACTATTCATGTTTATCTTATTTAAGAGACAAACTTT
259 TAATCCTGAAAAGAAT-GGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTT
* * *
1967828 GATTCTATCAAAAACGGTGGGAAGAAAAGCTTTTCTTGTGACACCAAAGCATCAATGTCATGTAT
323 GATTCTATCAAAAACGGTTGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTAT
* * * * * * *
1967893 GCTAATAAAGGGAATGTGTTCTTGGTTCCCAATCTTGAAAAGAATGGAGAATATTACGAGAATCA
388 CCTAATGAAGGGAATGTGTTCTTGGTTCCCAATCTTGAAAAGAA-AGAGACTGTTGCGAGAATCG
* *
1967958 ATGCTGGTCACT-TTTAAGGGATG
452 ATGCTTGTC-TTATTTAAGGGATG
* * * *
1967981 AATTTTGATTTTAAGGAAAATAGGGCAAAGGAAAGTTTTCCATCCAAAAGAAATTCATCAATATC
1 AATTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATC
* * * * * * * *
1968046 ATTTATCCTAATTAGGAGAATGTATTTATTGCGCCTTATCACAAAACGAATGAAGATCACTACTA
66 ATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATTATTACTA
* * * * *
1968111 GAATCCATGTTTATCTCA-TTGAGGCACGAACTTAGTCTTTATAAAAATTGGT-AGGAAGAATGC
131 GAATCCATATTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGA-GAAGAAAGC
* ** * * *
1968174 CTTTCTAGCAAAACCAAAGCATCAATATTGTCTATCCTAATGAGAAGACTACGTTTATGGTGCCT
195 CTTTCTTGCAAAACCAAAGCATCAATATCATGTATCCTTATGAGAAGACTATGTTTATGGTGCCT
* * * * *
1968239 AAT-TTGGAAAAGAGTGAGGATTAGTATGATTATTCTTATTTGTCTTATTTAAGAGAGCAAACTT
260 AATCCT-GAAAAGAATG-GGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGA-CAAACTT
** * ** * *
1968303 TGATTCCGTCAAAAACGATAAAAACAAAAGCTTTTCTTGTGACACCAAAGCATCAATGTCATGTA
322 TGATTCTATCAAAAACGGTTGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTA
* * * *
1968368 TCCTAATGAAGGTAATGTGTTCTTAGTTCCCAATCTTGAAAA-ATATGGAGACTGTTACGAGAAT
387 TCCTAATGAAGGGAATGTGTTCTTGGTTCCCAATCTTGAAAAGA-A-AGAGACTGTTGCGAGAAT
* * * *
1968432 CGATGCTTGCCATATTTAAGAGATA
450 CGATGCTTGTCTTATTTAAGGGATG
* * * *
1968457 AATTTTTATTTTAAGGAAAATAGGGTAAAGGAAAGATTTTCATGCAAAA-AAAATTCATCAATAT
1 AATTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAA-TCATCAATAT
* * * * * * *
1968521 CAATTATCCTAATGAGGAGAATGTATTTATCGTGCCTAATCACAAAATGTATAAATATCATTACT
65 CATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATTATTACT
** * * * *
1968586 AGAATCCACGTTAGTCTCATTTGAGGCACGAAATTATACTTTACAAAAATTGGTGGGAAGAAAGC
130 AGAATCCATATTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGAGAAGAAAGC
* * * * *
1968651 CTTTCTTGCAAAATCGAAGCGTCAATATCGTGTATCCTTATG-GAAAGACTAAGTTTATGGTGCC
195 CTTTCTTGCAAAACCAAAGCATCAATATCATGTATCCTTATGAG-AAGACTATGTTTATGGTGCC
* * * *
1968715 TAATCCTGAAAAAAAATAGGGATTAGTATGAGTATTCATTTTTGT-TGTATTTAAAAGAAAAACT
259 TAATCCTG-AAAAGAAT-GGGATTAGTATGAGTATTCATGTTTGTCT-TATTTAAGAGACAAACT
* ** ** * * ** *
1968779 ATGATTCTGCCAAAAATAGTTGAAAGAAAACCATTTCTTATGACACCAAACCATCAATGTCATGT
321 TTGATTCTATCAAAAACGGTTGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGT
* * * * ** * * * * ****
1968844 ATCCCAAAGAAGGGAAAGTGTTTTTGCATCCTAATCTTGAAACGAATGAAGACTATAAAAAGAAT
386 ATCCTAATGAAGGGAATGTGTTCTTGGTTCCCAATCTTGAAAAGAAAG-AGACTGTTGCGAGAAT
*
1968909 CGATGCTTGTCTTATTTAAGGGAAG
450 CGATGCTTGTCTTATTTAAGGGATG
* * * * *
1968934 AACTTTGATTTTAA-AAAAAGTAGGACAAAGAAAAGATTTTCATGCAAAAG-AAAGCATCAATAT
1 AATTTTGATTTTAAGGAAAA-TAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATAT
* * * * *
1968997 CATTTAACCTAATTAGGAGAATGTGTTTATAGTTCCTAATCAAAAAATGAATGAAGATCATTACT
65 CATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATTATTACT
* * * * * * *
1969062 AGAATCCATGTTTGTTTCATTTGAGGCACGAATTTACACTTTACAAAAATGGGTGGGACGAAAGC
130 AGAATCCATATTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGAGAAGAAAGC
** ** * * * * *
1969127 CTTTCTTGCAAAATTAAAGTGTCAATATCATCTATCCTAATAAGGAGACTATGTTTATGGAGCCT
195 CTTTCTTGCAAAACCAAAGCATCAATATCATGTATCCTTATGAGAAGACTATGTTTATGGTGCCT
* * * *
1969192 AATCCTGAAAAGAGTTGGGATTACTAT-AGATATTCTTGTTTGTCTTATTTTAGAGACAAACTTT
260 AATCCTGAAAAGA-ATGGGATTAGTATGAG-TATTCATGTTTGTCTTATTTAAGAGACAAACTTT
* * * * *
1969256 GATTCTATCAAAAAACAGTGGAAAGAAAA-CTTTTTCTTGTGACAGCAAAGCATCAATGTCATTT
323 GATTCTATC-AAAAACGGTTGAAAGAAAAGC-TTTTCTTGCGACACCAAAGCATCAATGTCATGT
* * ** * * **
1969320 ATCCTAATGAAGGGAATGTGTTTTTGGATCCCAATCACGAAAA-AATGGCGACTGTTATGAGAAT
386 ATCCTAATGAAGGGAATGTGTTCTTGGTTCCCAATCTTGAAAAGAA-AGAGACTGTTGCGAGAAT
*
1969384 CGATGCTTGCCTTATTTAAGGGATG
450 CGATGCTTGTCTTATTTAAGGGATG
* * * * * *
1969409 AACTTTGATTTTAAAGAAAATAGGGCAAAGGAAACATTTCCATGCAAAAGAAAATCATCAACATA
1 AATTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATC
* * * *
1969474 ATTTATCTTAATGAAGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCAATACTA
66 ATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATTATTACTA
* * * * * *
1969539 GAATCCATGTTTGACTTATTTGAGGCACGAACTTA-CCGTTTACAAAAATTGGTGGGAAGAAAAC
131 GAATCCATATTTGTCTCATTTGAGGCACGAACTTAGAC-TTTACAAAAATTGGTGAGAAGAAAGC
* * * ** * * *
1969603 CTTTCTTGTAAAGCCAATGTGTTAATATCATGTATCCTTATGAGAAGGCTATGTTTAGGGTGCCT
195 CTTTCTTGCAAAACCAAAGCATCAATATCATGTATCCTTATGAGAAGACTATGTTTATGGTGCCT
* * * *
1969668 AATCCTGAAAAGAATAGGGATTAGTATGAGTATTAATGTTTGTCTTATTTGAGAGATAAATTTTG
260 AATCCTGAAAAGAAT-GGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTG
* * ** *
1969733 ATTCTATGAAAAATGG-TGAAAAGAAAAG-TTTTCTTGTAACACCAAAGCATTAATGTCATGTAT
324 ATTCTATCAAAAACGGTTG-AAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTAT
* * * * *
1969796 CCTAATGAAGGGAATGTGTTCTCGATTCCTAATCTTGAAAAGAATGAAGACTGTTACGAGAATCG
388 CCTAATGAAGGGAATGTGTTCTTGGTTCCCAATCTTGAAAAGAAAG-AGACTGTTGCGAGAATCG
* *
1969861 ATGCTTGTCATATTTAAGGCATG
452 ATGCTTGTCTTATTTAAGGGATG
* * * * * *
1969884 AATTTTCATTATAAGGAAAATAAGGCAAAGAAAAGATTTCCGT-CTAAAAAAAAATTATCAATAT
1 AATTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGC-AAAAGAAAATCATCAATAT
* * *
1969948 CATTTATCCTAATGAGGAGAATGTGTTTATTGTGCCTAATCACAAAATGAATGAAAATTAATACT
65 CATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATTATTACT
* * * ** * * *
1970013 AGAATCCATGTTTGACTCATTTGAGGCACCAACTTACCCTTTACAAAAATTGGTGGGAAGTATGC
130 AGAATCCATATTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGAGAAGAAAGC
* * * * * * * *
1970078 CTTTCTAGCGAAACCAAAGCGTCAATATCGTCTATCC-AATCGAGAAGACTACGTTTGTGGTGCC
195 CTTTCTTGCAAAACCAAAGCATCAATATCATGTATCCTTAT-GAGAAGACTATGTTTATGGTGCC
* * * * *
1970142 TAATCTTAAAAAGAGTGAGGATTAGTATGACTATTCACGTTTGTCTTATTTAAGAGAACAAACTT
259 TAATCCTGAAAAGAATG-GGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAG-ACAAACTT
* * * * *
1970207 TGATTTTATAAAAAATGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAACCATCAATGTCATGTA
322 TGATTCTATCAAAAACGGTTGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTA
* * * * * * *
1970272 TCCTAATGAAAGGATTGTGTTCTTGGTTCCCAATCTTAAAAAGAATAGTGACTATTACAAGAATC
387 TCCTAATGAAGGGAATGTGTTCTTGGTTCCCAATCTTGAAAAGAA-AGAGACTGTTGCGAGAATC
* * *
1970337 GATGCTTCTCATATTTAAGAGATG
451 GATGCTTGTCTTATTTAAGGGATG
* **
1970361 AATTTTGATTTTAAGGAAAATA-GG-AAA-AAAA-ATTTCAATTAAAAAGAAAATCATCAATATC
1 AATTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATC
* * *
1970422 ATTTATCCTAATGAGGAGAATGTGTTTATAGTGTCTAATCACAAAATGAAT-AA-AGT-TCACTA
66 ATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATTATTACTA
* * * * * *
1970484 GAATCCTTGTTTGTCTCATTTAAGGCATGAACTTAGATTTTACAAAAATTGGTGGGAAGAAAGCC
131 GAATCCATATTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGAGAAGAAAGCC
* * * ** * * *
1970549 TTTATTGCAAAACCAAACCGTCAATATTTTGCATCCATATGAGAAGACTAAGTTTATGGTGCCTA
196 TTTCTTGCAAAACCAAAGCATCAATATCATGTATCCTTATGAGAAGACTATGTTTATGGTGCCTA
* * * * * *
1970614 ATCCTGAAAAGAATTAGGTTTAGTATGACTAGTCATGTTTGTCTTATTAAAGAGATAAACTTTGA
261 ATCCTGAAAAGAA-TGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGA
*
1970679 TTCTATCAAAAACGGTTGAAAGAAAAGCTTTTCTTGCGGCACCAAAG---C-ATGT-ATG----C
325 TTCTATCAAAAACGGTTGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCC
* * * * * * **
1970735 TGACGAAGGGAATGTGTTTTTAGTTCCCAATCTTGAAAAGAATGGAGTCTGTTATGAGAATCGAT
390 TAATGAAGGGAATGTGTTCTTGGTTCCCAATCTTGAAAAGAA-AGAGACTGTTGCGAGAATCGAT
* *
1970800 GCTTGCCATATTTAAGGGATG
454 GCTTGTCTTATTTAAGGGATG
* * * *
1970821 AATTTTGATTTTAAGGAAAATAGAGCAAAGAAAAGATTTTCATACAAAACAAAATCATCAATATC
1 AATTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATC
* * * * * **
1970886 ATTTATCCTAATGAGGACAGTGTGTTTATAATGCCTTATTACAAAATGTTTGAAGATTATTACTA
66 ATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATTATTACTA
* * * *
1970951 GAATCCATGTTTGTCTCTTTTGAAGCACGAACTTAGACTTTGCAAAAATTGGT-AGGAAGAAAGC
131 GAATCCATATTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGA-GAAGAAAGC
* * * * * **
1971015 CTTTTTTAG-GAAACGAAAGCATCAATATCATCTATCCTAACAAGAAGACTATGTTTATGGTGCC
195 CTTTCTT-GCAAAACCAAAGCATCAATATCATGTATCCTTATGAGAAGACTATGTTTATGGTGCC
* * *
1971079 T-ATTCTAGAAAAGAATGGGGATTAGTTTGACTATTCATGTTTGTCTTATTTAAGAGAGCAAACT
259 TAATCCT-GAAAAGAAT-GGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGA-CAAACT
* * *
1971143 TTGATTCTATC-AAAACGGTGGAAA-AAAAGCTTTTCTTGTGACACCAAAGCATCAATGTTATGT
321 TTGATTCTATCAAAAACGGTTGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGT
* * * * **
1971206 A-CGCTAAAGAAGGGAATGTGTTATTGGTTCCCAATCTTGAAAAGAATGGAGACTATTATGAGAA
386 ATC-CTAATGAAGGGAATGTGTTCTTGGTTCCCAATCTTGAAAAGAA-AGAGACTGTTGCGAGAA
* * *
1971270 TCGATGCTAGTCATATTTAAGGGGTG
449 TCGATGCTTGTCTTATTTAAGGGATG
* * * * * *
1971296 AATTTTGATTTTAAGGAAAAGAGGGCAAAAAAAATATTTCCATCCAAAAAAAAAAATTCATGAAT
1 AATTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGC--AAAAGAAAA-TCATCAAT
* * ** * *
1971361 ATCATTTACCCTAAAGAGGAGAATGTGTTTATAGTGCCTAATTTCAAAATGAATGAAGATCAATA
63 ATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATTATTA
* ** * ** * * **
1971426 CTAGAATCCATGTTTAACTCATTTGAGGCAC-AAATGTACCCTTTATAAAAATTAGTGAGATTAA
128 CTAGAATCCATATTTGTCTCATTTGAGGCACGAACT-TAGACTTTACAAAAATTGGTGAGAAGAA
* * * * * *
1971490 AGCCTTTTTTG-AGAAACCAAAACATCAATATCGTCTATCCTCATGAGAAGACTACGTTTATGGT
192 AGCCTTTCTTGCA-AAACCAAAGCATCAATATCATGTATCCTTATGAGAAGACTATGTTTATGGT
* * * * *
1971554 GCTTATTCCTTAAAAGAATGGGGATTAGTATAACTATTCATGTTTGTCTTATTTAAGAGAGCAAA
256 GCCTAATCCTGAAAAGAAT-GGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGA-CAAA
* * *
1971619 CTTTGATTTTATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATTTCAT
319 CTTTGATTCTATCAAAAACGGTTGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCAT
* * * * * **
1971684 GTATACAAATGAAGGGAATATGTTCTTGGTTCCCAATCTTAAAAAGAATGGAGACTGTTATGAGA
384 GTATCCTAATGAAGGGAATGTGTTCTTGGTTCCCAATCTTGAAAAGAA-AGAGACTGTTGCGAGA
* *
1971749 ATCGATACTTGTCATATTTAAGGGATG
448 ATCGATGCTTGTCTTATTTAAGGGATG
* * ** **
1971776 AATTTTAATTTTAAGAAAAATAGGGCAAAGAAAAGATTTGAATTAAAAAGAAAATCATCAATATC
1 AATTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATC
* * * * *
1971841 ATTTATCCTAATTAGGAGAATGTGTTTATAGTGCCTAATCAAAAAATGACT-AA-AGT-TCACTA
66 ATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATTATTACTA
* * * * * * *
1971903 CAATCCTTGTTTGTCTTATTTGAGGCATGAACTTAGACTTTACAAAAATTGGGGGGGAAGAAAGC
131 GAATCCATATTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATT-GGTGAGAAGAAAGC
* * * * * * * *
1971968 CTTTTTTGTAAAAGCAAAGCGTCAATAT--TTTATACCTTATGAGAGGACTAAGTTTATGGCGCC
195 CTTTCTTGCAAAACCAAAGCATCAATATCATGTAT-CCTTATGAGAAGACTATGTTTATGGTGCC
* * * *
1972031 TAATCCTGAAAA-AAGTGGAGATTAATATGACTATTCATGTTTGTCTTATTAAAGAAACAAACTT
259 TAATCCTGAAAAGAA-TGG-GATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTT
* *
1972095 TGATTCTATCAAAAACGGTTGAAAGAAAAGCATTTCTTGCGACACCAAAGCATCTATGTCATGTA
322 TGATTCTATCAAAAACGGTTGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTA
* * * * *
1972160 TCCTGACGAAAGGAATGTGTTCTTGGTTCCCAATCTTGAAAA-AAATGGAGACTATTACGAGAAT
387 TCCTAATGAAGGGAATGTGTTCTTGGTTCCCAATCTTGAAAAGAAA--GAGACTGTTGCGAGAAT
*
1972224 CGATGCTTGTCATATTTAAGGGATG
450 CGATGCTTGTCTTATTTAAGGGATG
* *
1972249 AATTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTTCATACAAAA-AAAATCATCAATATC
1 AATTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATC
* * * *
1972313 ATTTATCCAAATGAGGAGAATGTGTTTATAGTGCTTTATCACAAAATGAATGATGATCT-TTACT
66 ATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGAT-TATTACT
* * * * *
1972377 AGAATCCATGTTTGTCTCCTTTGAGGCATGAACATAGAGTTTACAAAAATTGGCT-A-AAGGAAA
130 AGAATCCATATTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGG-TGAGAA-GAAA
* * * * * * * *
1972440 GCTTTTTTTGCAAAACCAAAACATCAATATCGTCTATCCTAATGAGAAAACTATGGTTATGGTGC
193 GCCTTTCTTGCAAAACCAAAGCATCAATATCATGTATCCTTATGAGAAGACTATGTTTATGGTGC
** * * *
1972505 CTAAAGC-GAAAAGGAATGGGGATTAGTGTGACTATTCATGTTTGTCCTATTTAAGAGAGCAAAC
258 CTAATCCTGAAAA-GAAT-GGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGA-CAAAC
* * *
1972569 TTTGATTCTATCAAAAAC-GTGGAAAGAAAAGCTTTTCTTGGGATC-CCAAAGCATTAATGTCAT
320 TTTGATTCTATCAAAAACGGTTGAAAGAAAAGCTTTTCTTGCGA-CACCAAAGCATCAATGTCAT
* * * * ** *
1972632 ATATCCTAATGAAGGGAATGTGTTCTTGGTTCCAAATCTTGTAAAGAATGGAGAC-GATTATGGG
384 GTATCCTAATGAAGGGAATGTGTTCTTGGTTCCCAATCTTGAAAAGAA-AGAGACTG-TTGCGAG
*
1972696 AATCGATGCTTGTCATATTTATA-GGATG
447 AATCGATGCTTGTCTTATTTA-AGGGATG
* *
1972724 AATTTTGATTTTAAGGAAAATA-GG-AAA-AAAACAATTTCCGTGCAAAA-AAAATCATCAATAT
1 AATTTTGATTTTAAGGAAAATAGGGCAAAGAAAA-GATTTCCATGCAAAAGAAAATCATCAATAT
1972785 CATTTATCCTAATGA
65 CATTTATCCTAATGA
1972800 AGGGATCATT
Statistics
Matches: 18369, Mismatches: 3207, Indels: 1775
0.79 0.14 0.08
Matches are distributed among these distances:
457 1 0.00
458 87 0.00
459 187 0.01
460 195 0.01
461 277 0.02
462 268 0.01
463 37 0.00
464 93 0.01
465 16 0.00
466 40 0.00
467 169 0.01
468 26 0.00
469 311 0.02
470 656 0.04
471 236 0.01
472 454 0.02
473 1120 0.06
474 1334 0.07
475 5271 0.29
476 4867 0.26
477 1116 0.06
478 302 0.02
479 27 0.00
480 157 0.01
481 17 0.00
482 4 0.00
483 6 0.00
484 11 0.00
485 5 0.00
486 8 0.00
487 10 0.00
488 11 0.00
489 16 0.00
490 19 0.00
491 10 0.00
492 12 0.00
493 20 0.00
494 9 0.00
495 7 0.00
496 4 0.00
497 8 0.00
498 61 0.00
499 121 0.01
500 122 0.01
501 9 0.00
502 8 0.00
503 17 0.00
504 69 0.00
505 57 0.00
506 103 0.01
507 45 0.00
508 39 0.00
509 77 0.00
510 22 0.00
511 23 0.00
512 25 0.00
513 8 0.00
514 9 0.00
517 4 0.00
518 2 0.00
519 3 0.00
520 3 0.00
521 2 0.00
522 3 0.00
523 2 0.00
524 3 0.00
525 2 0.00
526 2 0.00
527 3 0.00
528 6 0.00
529 3 0.00
531 8 0.00
532 8 0.00
533 18 0.00
534 21 0.00
535 12 0.00
536 11 0.00
537 7 0.00
538 6 0.00
539 1 0.00
ACGTcount: A:0.36, C:0.14, G:0.18, T:0.31
Consensus pattern (474 bp):
AATTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATC
ATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATTATTACTA
GAATCCATATTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGAGAAGAAAGCC
TTTCTTGCAAAACCAAAGCATCAATATCATGTATCCTTATGAGAAGACTATGTTTATGGTGCCTA
ATCCTGAAAAGAATGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGAT
TCTATCAAAAACGGTTGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCT
AATGAAGGGAATGTGTTCTTGGTTCCCAATCTTGAAAAGAAAGAGACTGTTGCGAGAATCGATGC
TTGTCTTATTTAAGGGATG
Found at i:1951747 original size:951 final size:950
Alignment explanation
Indices: 1949862--1972799 Score: 13729
Period size: 951 Copynumber: 24.1 Consensus size: 950
1949852 AGATCCTAAC
*
1949862 AATTTTGAATTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATC
1 AATTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATC
* ** * *
1949927 ATTTATTCTAACAAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTA
66 ATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAAGGAATGAAGATTATTACTA
* * * * * * * *
1949992 GAATCCTTGTTGGTCTCATTTGACGCACGAACATAGACATTATAAAAATTGGTTAGAAAAAAGCC
131 GAATCCATATTTGTCTCATTTGAGGCACGAACATAGACTTTACAAAAATTGGTGAGAAGAAAGCC
** * * * * * * *
1950057 TTTCTTGTGAAACCAAAGCATCAACATCATCTATCCTAATGAGAAGACTATGTTTATGTTGCCTA
196 TTTCTTGCAAAACCAAAGCATCAATATCCTGTATCCTTATGAGAAAACTAAGTTTATGGTGCCTA
* * * * * * *
1950122 TTCCTGAAAAGAATGGGGATTAGTATGACTATTCATGTTTGTCATAGTTAAGAGATAAGCTTTGA
261 ATCCTGAAAAGAATGGGCATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGA
* * ** *
1950187 ATCTATCAAAAATGAAGAAAAGAAAAGCTTTTCTTGCGACACCCAAGCA-CTAATGTCATGTATC
326 TTCTATCAAAAACGGTGAAAAGAAAAGCTTTTCTTGCGACACCAAAGCATC-AATGTCATGTATC
* * * * * *
1950251 CTAATGAACAGAATGTGTTCTTAGTTCCCAATCTTGAAAAGAATGGAGACAGTTGTGAGAATCGA
390 CTAATGAAGAGAATGTGTTCTTGGTTCCCAATCCTGAAAAGAAAGGAGACTGTTGCGAGAATCGA
* * * * * * * *
1950316 TGCTGGACATATTTGAGAGATAAATTTTGATTTTAAGGAAAATAGGGGAAAGAAAAGTTTTCCAT
455 TGCTTGCCTTATTTAAGGGATGAATTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCAT
* * * * *
1950381 CCAAAAGAAAATCGTCAATATCATTTATCAT-ATCGAGGAG-TTGTGTTTATAGTGCCTAATGAC
520 GCAAAAGAAAATCATCAATATCATTTATCCTAAT-GAGGAGAATGTGTTTATAGTGCCTAATCAC
* * * * ** *
1950444 AAACTGATTGAAGATCATTACTAGAATCCATGTTTATCTCATTTGAGTTACGAACTTACACTTTA
584 AAAATGAATGAAGATCATTACTAGAATCTATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTA
** * * * *
1950509 TAAAAATTGGGGAGAAGAAAGCCTTTCTTGCGAAACTAAAGCATCAACATCGTC-TATCCTAATG
649 TAAAAATTGGTAAGAAGAAAGCCTTTCTTGCGAAACCAAAGCATCAATATC-ACGTATCCTTATG
* * * * *
1950573 AGAAGACAATGTTTATGTTGCCTAATCCTAAAAAGAATAGGGATTAGGATTACTATTCATGTTTG
713 AGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAAT-GGGATTAGTATGACTATTCATGTTTG
* * * * *
1950638 TCATT-TTTAAGAGATAAACTTTGATTCTATAAAAAATGGTAAAAAGAAAAACTTTTCTTGC-AG
777 TC-TTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGAAAA-AAAAGCTTTTCTTGCGAG
* ** * *
1950701 CACCAAAGCATCAATGTCTTGTATCCTAATGAAGAAAACGTGTTCTTGGTTCCAAATCTTGAAAA
840 -ACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTCTTGGTTCCCAATCTTGAAAA
* * **
1950766 GAGAA-GAGACAGTTGCTAGAATCGATGCTTGTGATATTTAAGGGATA
904 GA-AAGGAGACTGTTGCGAGAATCGATGCTTGTCTTATTTAAGGGATA
* * * **
1950813 AATTTTTATTTTAAGAAAAATAGGGAAAAGAAAAGATTTCCATGTGAAAGAAAATCATCAATATC
1 AATTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATC
* * * * *
1950878 ATTTATCCTAATGAGGAAAATATGTTTATAGTGCCTAATCGCAAAATGAATGAATATTATTACTA
66 ATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAAGGAATGAAGATTATTACTA
* * **
1950943 GAATCCATTTTTGTCTCATTTTAGGCACGAAGTTAGACTTTACAAAAATTGAGTG-GAAGAAAGC
131 GAATCCATATTTGTCTCATTTGAGGCACGAACATAGACTTTACAAAAATTG-GTGAGAAGAAAGC
** * * * * *
1951007 CTTTCTTGCAAAAATAATGCATCAATATCATGTATCCTTATGAGAAGACTATGTTTATGGTTCCT
195 CTTTCTTGCAAAACCAAAGCATCAATATCCTGTATCCTTATGAGAAAACTAAGTTTATGGTGCCT
* * * *
1951072 AATCCTGAAAAGAATAAGG-ATTAGTATGAGTATTAATGTTTGTCTTATTTAAGAGATAAATTTT
260 AATCCTGAAAAGAAT-GGGCATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTT
* * * * *
1951136 GATTTTATCCAAAACGGTGGAAAGAAAAGCTTTTCCTGCGACACCAAATCATCAATGTCATGTAT
324 GATTCTATCAAAAACGGTGAAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTAT
* * * *
1951201 CCTAATGAAGGGAATGTGTTCTTGGTTACCAATCCTGAAAAGAATGGAGACTATTGGCGAGAATC
389 CCTAATGAAGAGAATGTGTTCTTGGTTCCCAATCCTGAAAAGAAAGGAGACTGTT-GCGAGAATC
* * * * *
1951266 GATGCTTGTCTTTTTTAAGGGAT-AACTTTGATTTTAAGAAAAATATGGCAAAGAAAAGATTTCC
453 GATGCTTGCCTTATTTAAGGGATGAATTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCC
* *
1951330 ATGCAAAACAAAATCATTAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCA
518 ATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCA
* * * * * * *
1951395 CAAAAGGAATGAAGATC-TTAGTAGAATCTATATTTGTCTCATTCGAGGTACAAACATAGACTTT
583 CAAAATGAATGAAGATCATTACTAGAATCTATGTTTGTCTCATTTGAGGCACGAACTTAGACTTT
* * * * *
1951459 ACAAAAATTGGTAAGAAGAAAGCTTTTCTGGCAAAACCAAAGCATCAATATC-CAGTATCCTTTT
648 ATAAAAATTGGTAAGAAGAAAGCCTTTCTTGCGAAACCAAAGCATCAATATCAC-GTATCCTTAT
* * * * * * *
1951523 GAGAAAACTAAGTTTTTGGTGCCTAATCTTGCAACGAATGGGCATTAGTATGAGTATTCATGTTT
712 GAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGG-ATTAGTATGACTATTCATGTTT
* * * *
1951588 GTTTTATTTGAGAGACAAACTTTGATTCCATCAAAAACGGTTGAAAAAATAGCTTTTCTTGCGAG
776 GTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGG-TGAAAAAAAAGCTTTTCTTGCGAG
* * * * * *
1951653 ACCGAAGCATCAATGTCATCTATCCTAATAAAGGGAATGTGTTTTTGGTTCCCAATCTAGAAAAA
840 ACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTCTTGGTTCCCAATCTTGAAAAG
* * * *
1951718 AAAGGAGACTGTTACGAGAATCAATGCTTGCCTTATTTAAGGGATG
905 AAAGGAGACTGTTGCGAGAATCGATGCTTGTCTTATTTAAGGGATA
*
1951764 AATTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCGATATC
1 AATTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATC
* * *
1951829 ATTTATCCTAATAAGGAGAATGTGTTTATAGTGCCTAATCAAAAAAGGAATGAAGA-TCTTACTA
66 ATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAAGGAATGAAGATTATTACTA
* * * * *
1951893 GAATCTATAATTGTCTCGTTCGAGGCACGAACATAGACTTTACAAAAATTGGTGAGAAGAAAGCT
131 GAATCCATATTTGTCTCATTTGAGGCACGAACATAGACTTTACAAAAATTGGTGAGAAGAAAGCC
** *
1951958 TTTCCAGCAAAACCAAAGCATCAATATCCTGTATCCTTATGAGAAAACTAAGTTTTTGGTGCCTA
196 TTTCTTGCAAAACCAAAGCATCAATATCCTGTATCCTTATGAGAAAACTAAGTTTATGGTGCCTA
* * * * * *
1952023 ATCCTGAAACGGATGGGTATTATTATGAGTATTCATGTTTGTTTTGTTTAAGAGACAAACTTTGA
261 ATCCTGAAAAGAATGGGCATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGA
* * *
1952088 TTCCATCAAAAACGGTTGAAAAAAAAAGCTTTTCCTGCGACACCAAAGCATCAATGTCATGTATC
326 TTCTATCAAAAACGG-TGAAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATC
* * * * * * *
1952153 CTAATGAAGGGAATGTGTTATTGCTTGCCAATCTTGAAAAGAATGAAGACTGTTGGCGAGAATCG
390 CTAATGAAGAGAATGTGTTCTTGGTTCCCAATCCTGAAAAGAAAGGAGACTGTT-GCGAGAATCG
* **
1952218 ATGCTTGTCTTATTTAAGGGAT-AACATTGATTTTAAGGAAAAT-GTGGCAAAGAAAAGATTTCC
454 ATGCTTGCCTTATTTAAGGGATGAATTTTGATTTTAAGGAAAATAG-GGCAAAGAAAAGATTTCC
* * * * *
1952281 ATGCAAATGAAAATCATCAATATAATTTATCCTAATAAGGAGAATGT-TTTATAGTGCCAAATGA
518 ATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCA
* * *
1952345 CGAAAA-GAATGAAGATC-TTACTAGAATCTATATTTGTCTCATTTGAGACACGAACATAGACTT
583 C-AAAATGAATGAAGATCATTACTAGAATCTATGTTTGTCTCATTTGAGGCACGAACTTAGACTT
* * * * * * *
1952408 CACAAAAATTGGTGAGACGAAAGCTTTTAC-GGCAAAACCAAAGCATCAATATC-CTGTATCCTT
647 TATAAAAATTGGTAAGAAGAAAGCCTTT-CTTGCGAAACCAAAGCATCAATATCAC-GTATCCTT
* * * * * *
1952471 ATGAGAAAACTAAGTTTTTGGTGCCTAATCCT-AAAATGAATGGGCATTACTATGAATATTAATG
710 ATGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAA-GAATGGG-ATTAGTATGACTATTCATG
* *
1952535 TTTGT-TCTATTTAAGAGACAAAATTTGATTCTATCAAAAACGGTTGAAAAAAAAGCTTTCCTTG
773 TTTGTCT-TATTTAAGAGACAAACTTTGATTCTATCAAAAACGG-TGAAAAAAAAGCTTTTCTTG
* * * * * * *
1952599 CGACACCAAAGCATCAATGTCATGTACCCTAACGAGGGGAATGTGTTTTTGGTTCCAAATCTAGA
836 CGAGACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTCTTGGTTCCCAATCTTGA
* * * *
1952664 AAAGAAAGGAGACTGTTACGAGAATCAATGCTTGCCTTATTTAAGGGATG
901 AAAGAAAGGAGACTGTTGCGAGAATCGATGCTTGTCTTATTTAAGGGATA
** *
1952714 AATTTTGATTTTAAGGAAAATAGGATAAAGAAAAGATTTCCTTGCAAAAGAAAATCATCAATATC
1 AATTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATC
* * * *
1952779 ATTTTTCCTAATGAGGAGAATGTGTTTACAGTGCCTAATCACAAAATGAATGAAGATCATTACTA
66 ATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAAGGAATGAAGATTATTACTA
* * * * * *
1952844 GAAT-CATTGTTTGTCTTATTTGAGGCACGAACTTAGACTTTATAAAAATTGGTCAAAAGAAAGC
131 GAATCCA-TATTTGTCTCATTTGAGGCACGAACATAGACTTTACAAAAATTGGTGAGAAGAAAGC
* * * * * * * *
1952908 CTTTCTTGCGAAACCAAAGCATCAACATCATCTATCCTAATGAGAAGACTATGTTTATGTTGCCT
195 CTTTCTTGCAAAACCAAAGCATCAATATCCTGTATCCTTATGAGAAAACTAAGTTTATGGTGCCT
* * * * * * *
1952973 AATCCTAAAAAGAATGGGGATTAGTATGACTATTCATGTTTGTCATATTTAGGAGATAAGCTTTG
260 AATCCTGAAAAGAATGGGCATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTG
* * * * * *
1953038 ATTCTATCGAAAACGATGAAAAGAAAAGCTTTTCTTGTGATACCCAAGCATCAATGTCACGTATC
325 ATTCTATCAAAAACGGTGAAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATC
* * * ** *
1953103 CTAATGAAGAGAATGTGTTCTTGATTCTCAAT-CTAGAAAAGAAAAGAGACTGTTATGAGAATCA
390 CTAATGAAGAGAATGTGTTCTTGGTTCCCAATCCT-GAAAAGAAAGGAGACTGTTGCGAGAATCG
* * *
1953167 ATGCTTGCCTTATTTAAGGGTTGAATTTTGATTTTAAGAAAAATAGGGTAAAGAAAAGATTTCCA
454 ATGCTTGCCTTATTTAAGGGATGAATTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCA
* * *
1953232 TGCAAAAGAAAATCATCAATATCATTTATCCTCATAAGAAGAATGTGTTTATAGTGCCTAATCAC
519 TGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCAC
* * * * * *
1953297 AAAAGGAATGAAGAT-TTTACTAGAATCTATATTTGTCTCGTTCGAGGCACGAACATAGACTTTA
584 AAAATGAATGAAGATCATTACTAGAATCTATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTA
* * * * * *
1953361 CAAAAAATGGTGAA-AAGAAAGCTTTTATGGCAAAACCAAAGCATCAATATC-CTGTATCCTTAT
649 TAAAAATTGGT-AAGAAGAAAGCCTTTCTTGCGAAACCAAAGCATCAATATCAC-GTATCCTTAT
* * * * * * *
1953424 GAGAAAACTAAGTTTTTGGTGCCTAATGCTGAAATGGATGGGCATTAGTATGAGTATTCATGTTT
712 GAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGG-ATTAGTATGACTATTCATGTTT
* ** *
1953489 GTTTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTTG--AAAAAATTTTTTCCTGC-AG
776 GTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGG-TGAAAAAAAAGCTTTTCTTGCGAG
* * * *
1953551 CACCAAAGCATCAATGTCATGTATCCTAATGAGGGGAATGTGTTATTGCTTGCCAATCTTGAAAA
840 -ACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTCTTGGTTCCCAATCTTGAAAA
* * *
1953616 GAATGGAGACTGTTGGAGAGAATCGATGCTTGTCTTATTTGAGGGATA
904 GAAAGGAGACTGTT-GCGAGAATCGATGCTTGTCTTATTTAAGGGATA
*
1953664 ACA--TTGATTTTAAGGAAAATATGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATAT
1 A-ATTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATAT
* * * * * *
1953727 CATTTATCCTAATTAGGAGAATGTGTTTATAGTTCCTAATCACGAAAGGACTAAAGA-TCTTACT
65 CATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAAGGAATGAAGATTATTACT
* * * * *
1953791 AGAATCTATATTTGTCTCATTTGAGACACAAACATAGACTTTAC--GAATTGGTGAGAGGAAAGC
130 AGAATCCATATTTGTCTCATTTGAGGCACGAACATAGACTTTACAAAAATTGGTGAGAAGAAAGC
* * * *
1953854 TTTTATGGCAAAACCAAAGCATCAATATCCTGTATCCTTATGAGAAAACTAAGTTTTTGGTGCCT
195 CTTTCTTGCAAAACCAAAGCATCAATATCCTGTATCCTTATGAGAAAACTAAGTTTATGGTGCCT
** * * * * *
1953919 AATTTTGAAACGAATGGGCATTAGTATGAGTATTCATGTTTTTTTTATTTACGAGACAAAATTTG
260 AATCCTGAAAAGAATGGGCATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTG
* * *
1953984 ATTCTACCAAAAACGGTTGAAAA-AAAAGCTTTTCTTACGACACCAAAGCATCAATGTCATGTAC
325 ATTCTATCAAAAACGG-TGAAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTAT
* * * * *
1954048 CCTAATGAAGGGAATCTGTTTTTGGTTCTCAAT-CTAGAAAAGAAAGGAGACTGTT-AGAGAATC
389 CCTAATGAAGAGAATGTGTTCTTGGTTCCCAATCCT-GAAAAGAAAGGAGACTGTTGCGAGAATC
* * *
1954111 AATGCCTT-CCTTATTTAAGGGATGAATTTCGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTT
453 GATG-CTTGCCTTATTTAAGGGATGAATTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTC
* * * *
1954175 CGTGCAAAAGAAAATCATCAATATCTTTTATCCTAACGAGGAGAATGTGTTTACAGTGCCTAATC
517 CATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATC
* *
1954240 ACAAAATGAATGAAGATCATTACTAGAATCCT-TGTTTGACTTATTTGAGGCACGAACTTAGACT
582 ACAAAATGAATGAAGATCATTACTAGAAT-CTATGTTTGTCTCATTTGAGGCACGAACTTAGACT
* * * *
1954304 TTATAAAAATTGGTCAGAAGAAAGCCTTTTTTGCGAAACCAAAGCATCAACATCATC-TATCCTA
646 TTATAAAAATTGGTAAGAAGAAAGCCTTTCTTGCGAAACCAAAGCATCAATATCA-CGTATCCTT
* *
1954368 ATGAGAAGACTATGTTTATGTTGCCTAATCTTGAAAAGAATGGGGATTAGCT-TGACTATTCATG
710 ATGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAAT-GGGATTAG-TATGACTATTCATG
* * * * * *
1954432 TTTATCATATTTAAGAGATAAACCTTGATTCTATCAAAAACGATGAAAAGAAAAGCTTTTCTTGT
773 TTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGAAAA-AAAAGCTTTTCTTGC
* * *
1954497 G-GCACCCAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTCTTGGTTCCTAATCTCGA
837 GAG-ACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTCTTGGTTCCCAATCTTGA
** * * *
1954561 AAAGAAAGGAGACTACTACGAGAATCAATGCTTGCCTTATTTAAGGGATA
901 AAAGAAAGGAGACTGTTGCGAGAATCGATGCTTGTCTTATTTAAGGGATA
*
1954611 AATTTTGATTTTAAGGAAAATGGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATC
1 AATTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATC
* * *
1954676 ATTTATCCTAATAAGGAGAATGAT-TTTATAGTGCCTAAACACAAAAGGAATGAAGA-TCTTACT
66 ATTTATCCTAATGAGGAGAATG-TGTTTATAGTGCCTAATCACAAAAGGAATGAAGATTATTACT
* * *
1954739 AGAATCTATATTTGTCTCATTCGAGGCACGAACATAGACTTTACAAAAGTTGGTGAGAAGAAAGC
130 AGAATCCATATTTGTCTCATTTGAGGCACGAACATAGACTTTACAAAAATTGGTGAGAAGAAAGC
* * * *
1954804 TTTTATGGCAAAACCAAAGCATCAATATCCTGTATCCTTA--AGAAAACTAAGTTTTTGGTGCCT
195 CTTTCTTGCAAAACCAAAGCATCAATATCCTGTATCCTTATGAGAAAACTAAGTTTATGGTGCCT
* * *
1954867 AATCTTGAAACA-AATGGGCATTAGTCTGAGTATTCATGTTTGTTTTATTTAAGAGACAAACTTT
260 AATCCTGAAA-AGAATGGGCATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTT
* * * *
1954931 GATTCTATCAAAAATTGTTGAAAA-AAAAGCTTTTCTTGCGACACCTAAGCATCAATGCCATGTA
324 GATTCTATCAAAAA-CGGTGAAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTA
* * * *
1954995 TCCTAATGAAAAGAATGTGTTTTTGGTTCCCAAT-CTAAAAAGAAAGGAGACTGTTACGAGAATC
388 TCCTAATGAAGAGAATGTGTTCTTGGTTCCCAATCCTGAAAAGAAAGGAGACTGTTGCGAGAATC
* * * *
1955059 AATGCTTGCCTTATTTAAGGGAGGAATTTTGATTTTAAGGAAAATAAGGCAAAGAAAAGATTTTC
453 GATGCTTGCCTTATTTAAGGGATGAATTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCC
* * *
1955124 ATTG-AAAAGAAAATCACCGATATCATTTATCCTAACGAGGAGAATGTGTTTATAGTGCCTAATC
518 A-TGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATC
* * * *
1955188 ACAAAATAAATGAAGATCATTATTAGAATCCTA-GTTTGTCTTATTTGAGGTACGAACTTAGACT
582 ACAAAATGAATGAAGATCATTACTAGAAT-CTATGTTTGTCTCATTTGAGGCACGAACTTAGACT
* * * *
1955252 TTATAAAAATTGGTCAGAAGAAAGCCTTTCTTGCGAAACCAAAGCATCAACATCACCTATCCTAA
646 TTATAAAAATTGGTAAGAAGAAAGCCTTTCTTGCGAAACCAAAGCATCAATATCACGTATCCTTA
** * * * *
1955317 TGAGAAGACTATGTTTATCTTGCCTAATCCTAAAAAGAATGGGGATTAATATTACTATTTATGTT
711 TGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAAT-GGGATTAGTATGACTATTCATGTT
* * ** * * *
1955382 TGTCATATTTAAGAGATAGGCTTTGATTCTATCAAAAATGATG--AAGAAAG--------GC-A-
775 TGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGAAAAAAAAGCTTTTCTTGCGAG
* * *
1955435 ACC-AAGCATCAATGTCATGTGA-CCTAATGAATGGAAAGTGTTCTTAGTTCCCAATCTTGAAAA
840 ACCAAAGCATCAATGTCATGT-ATCCTAATGAAGGGAATGTGTTCTTGGTTCCCAATCTTGAAAA
* * *
1955498 GAATGGAGACAGTTGCGAGAATAC-ATG-TTGGT-TATATTTAAGAGATA
904 GAAAGGAGACTGTTGCGAGAAT-CGATGCTT-GTCT-TATTTAAGGGATA
* * * * *
1955545 AATTTTGATTATAAGGAAAATAGAGCAAAGAAAAGTTTTCCATCCAAAAAAAAATCATCAATATC
1 AATTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATC
* * * *
1955610 ATTTATCCT-ATCGAGAAGATTGTGTTTATAGTGCCTAATCA-AAAATTGAATGAAGATCATTAC
66 ATTTATCCTAAT-GAGGAGAATGTGTTTATAGTGCCTAATCACAAAA-GGAATGAAGATTATTAC
* * * * ** * *
1955673 TAGAATACGTGTTTGACTCATTTGAGTTACGAACTTACACTTTACAAAAATTGGTGAGAA-AATA
129 TAGAATCCATATTTGTCTCATTTGAGGCACGAACATAGACTTTACAAAAATTGGTGAGAAGAA-A
* * * * * * * * *
1955737 GCCTTTCTTGCGAAACAAAAGCATCAACATCGTCTATCCTTATGAGAAGACTATG-TTATGTTGG
193 GCCTTTCTTGCAAAACCAAAGCATCAATATCCTGTATCCTTATGAGAAAACTAAGTTTATGGTGC
* * * * * *
1955801 CTAATCCTAAAAAGAATGGGGATTAGGATGACTATTCATGTTTGTCATT-TTAAAGAGACAAGCT
258 CTAATCCTGAAAAGAATGGGCATTAGTATGAGTATTCATGTTTGTC-TTATTTAAGAGACAAACT
* * ** * * *
1955865 TTGATTCTATTAAAAATGGAAAAAAGAAAAGCTTTTCTTGC-AGTACCAAAGCGTCAACGTCATG
322 TTGATTCTATCAAAAACGGTGAAAAGAAAAGCTTTTCTTGCGA-CACCAAAGCATCAATGTCATG
* * * * *
1955929 TATCCTAATGAAGAAAATGTGTTCTCGGCTCCCAATCTTGAAAAGAAAGGAGACAGTTGCTG-GA
386 TATCCTAATGAAGAGAATGTGTTCTTGGTTCCCAATCCTGAAAAGAAAGGAGACTGTTGC-GAGA
* *** * * *
1955993 ATCGATGCTAGTGATATTTGAGGGATGAATTTTTATTTTAAGGAAAATAGGGCAAAGAAAAGCTT
450 ATCGATGCTTGCCTTATTTAAGGGATGAATTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATT
* * *
1956058 TCCATGCAAAAGAAAATCATCAATATCATTTATCCTATTGAGGAGAATATGTTTATAGTACCTAA
515 TCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAA
* * * * * * *
1956123 TCACATAATTAATGAATATCTTTACTAGAATCCATGTTTGTCTTATTTGAGGCACGAACTTTGAC
580 TCACAAAATGAATGAAGATCATTACTAGAATCTATGTTTGTCTCATTTGAGGCACGAACTTAGAC
* * * *
1956188 TTTATAAAAATTAAGG--GGAAGAAAGCCTTTCTTGCGAAACTAATGCATCAATATCATGTATCC
645 TTTATAAAAATT--GGTAAGAAGAAAGCCTTTCTTGCGAAACCAAAGCATCAATATCACGTATCC
* * * * * * *
1956251 TTATGAGAAGACTATGTTTACGATGCCTAATCCAGGAAAGAATAAGGATTAGTATGAGTATTAAT
708 TTATGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAAT-GGGATTAGTATGACTATTCAT
* * * * * * * *
1956316 GTTTATCTTATTTAAGAGACAAATTTTGTTTTTATCCAAAATGGTAAAAAGAAAAGTTTTTCTTG
772 GTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGAAAA-AAAAGCTTTTCTTG
* * * * * *
1956381 TGATAGCAAAGCATTAATGTCATGTATCCTAATGAAGGGAATGTGTTCTTGGTTACTAATCTTGA
836 CGAGACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTCTTGGTTCCCAATCTTGA
*
1956446 AAAGAATA-GAGACTGTTGGTGAGAATCGATGCTTGTCTTATTTAAGGGAT-
901 AAAGAA-AGGAGACTGTT-GCGAGAATCGATGCTTGTCTTATTTAAGGGATA
* *
1956496 AACTTTGATTTTAAGGAAAATATGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATC
1 AATTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATC
* * *
1956561 ATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAAGGAAAGAA-AATCTTACTA
66 ATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAAGGAATGAAGATTATTACTA
* * *
1956625 GAATCTATATTTGTCTCATTTGAGGCACGAAAATGGACTTTACAAAAATTGGTGAGAAGAAAG-C
131 GAATCCATATTTGTCTCATTTGAGGCACGAACATAGACTTTACAAAAATTGGTGAGAAGAAAGCC
* * *
1956689 TTTTTTAGCAAAACCAAAGCATCAATATCCTGCT-TCTTTATGAGAAAACTAAGTTTTTGGTGCC
196 TTTCTT-GCAAAACCAAAGCATCAATATCCTG-TATCCTTATGAGAAAACTAAGTTTATGGTGCC
* * *
1956753 TAATCCTGAAACGAATGGGCTTTAGTATGAGTATTCATGTTTGTTTTATTTAAGAGACAAACTTT
259 TAATCCTGAAAAGAATGGGCATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTT
* * *
1956818 GATTCTATCAAAAACGATTGAAAA-AAAGAGCTTTTCTTGCGATACCAAAGCATCAATGCCATGT
324 GATTCTATCAAAAACG-GTGAAAAGAAA-AGCTTTTCTTGCGACACCAAAGCATCAATGTCATGT
* * * **
1956882 ATCCTAATGAAGGGAATGTGTTTTTGGTTCCCAAT-CT-AGAAAGAAAGGAGATTGTTATGAGAA
387 ATCCTAATGAAGAGAATGTGTTCTTGGTTCCCAATCCTGA-AAAGAAAGGAGACTGTTGCGAGAA
* * * *
1956945 TCAATGATTGCCTTATTTAAGGGATGAATTTTGATTTTATGGATAATAGGGCAAAGAAAAGATTT
451 TCGATGCTTGCCTTATTTAAGGGATGAATTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTT
* *
1957010 TCATGCAAAAGAAAATCATCAATATCATTTATCCTAACGAGGAGAATGTGTTTATAGTGCCTAAT
516 CCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAAT
*
1957075 CACAAAATGAATGAAGATCATTACTAGAATCCT-TGTTTGTCTTATTTGAGGCACGAACTTAGAC
581 CACAAAATGAATGAAGATCATTACTAGAAT-CTATGTTTGTCTCATTTGAGGCACGAACTTAGAC
* * * * *
1957139 TTTATAAAAATTGGTCAGAAGAAAGCCTTTCTTGTGAAACCAAAGCATCAACATCACCTATCCTA
645 TTTATAAAAATTGGTAAGAAGAAAGCCTTTCTTGCGAAACCAAAGCATCAATATCACGTATCCTT
**
1957204 ATGAGAAGACTATGTTTATCTTGCCTAATCCTGAAAAGAATGGGGA-T--TA--ACTATTCATGT
710 ATGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAAT-GGGATTAGTATGACTATTCATGT
* * * * *
1957264 TTGT-TATATTTAAGAGA-TAGCTTTGATTCTATCAAAAATGATGAAAAAAAAAGTTTTTCTTGC
774 TTGTCT-TATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTG-AAAAAAAAGCTTTTCTTGC
* *
1957327 G-GCAACC-AAGCATCAATGTCATGTATCCTAATGAAAGGAAAGTGTTCTTGGTTCCCAATCTTG
837 GAG--ACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTCTTGGTTCCCAATCTTG
* * * * * *
1957390 AAAAGAATGGAGACAGTTGTGAGAATCGATGCTGGTCATATTTAAGAGATA
900 AAAAGAAAGGAGACTGTTGCGAGAATCGATGCTTGTCTTATTTAAGGGATA
* * *
1957441 AATTTTGATTATAAGGAAAATAGGGCAAAGAAAAGTTTTCCATCCAAAAGAAAATCATCAATATC
1 AATTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATC
* * *** *
1957506 ATTTATCCT-ATCGAGAAGATTGTGTTTATAGTGCCTAATCACAAATTAAATGAAGATCATTACT
66 ATTTATCCTAAT-GAGGAGAATGTGTTTATAGTGCCTAATCACAAAAGGAATGAAGATTATTACT
* * * * ** * *
1957570 GGAATCCATGTTTGACTCATGTGAGTTACGAACTTATACTTTACAAAAATTGGTGAGAAGAAAGC
130 AGAATCCATATTTGTCTCATTTGAGGCACGAACATAGACTTTACAAAAATTGGTGAGAAGAAAGC
* * * * * * * *
1957635 CTTTCTTGCGAAACCAAAGCATCAACATCGTCTATCCTAATGAGAAGACTATGTTTATGTTGCCT
195 CTTTCTTGCAAAACCAAAGCATCAATATCCTGTATCCTTATGAGAAAACTAAGTTTATGGTGCCT
* * * * * * *
1957700 AATCTTAAAAAGAGTGGGGATTAGGAAGACTATTCATGTTTGTCATT-TTTAAGAGACAAACTTT
260 AATCCTGAAAAGAATGGGCATTAGTATGAGTATTCATGTTTGTC-TTATTTAAGAGACAAACTTT
* * * *
1957764 GATTCTATCAAAAATGGTAAAAAGAAAAGCTTTTCTTGC-AGCACCAAAGCATCAACGTCTTGTA
324 GATTCTATCAAAAACGGTGAAAAGAAAAGCTTTTCTTGCGA-CACCAAAGCATCAATGTCATGTA
* * * * * *
1957828 TCCTAATGAAGAAAATGTGTTCTTAGTTCCCAATCTTGAAAAGAAGGGTGA-TAGTTGCTAGAAT
388 TCCTAATGAAGAGAATGTGTTCTTGGTTCCCAATCCTGAAAAGAAAGGAGACT-GTTGCGAGAAT
*** **
1957892 CGATGCTTGTGATATTTAAGGGATGAATTTTTG-TTTTAAGGAAAATAGGATAAAGAAAAGATTT
452 CGATGCTTGCCTTATTTAAGGGATGAA-TTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTT
* * * *
1957956 CCATGCAAAAAAAAATCATCAATATCATTTATCCTAATGAGGAGAATATGTTTATGGTACCTAAT
516 CCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAAT
* * * *
1958021 CACAAAATTAATGAATATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACAAACTTAGACT
581 CACAAAATGAATGAAGATCATTACTAGAATCTATGTTTGTCTCATTTGAGGCACGAACTTAGACT
** * *
1958086 TTATAAAAA---AAAAGGGTAAGAAAGCCTTTCTTGCGAAACTAATGCATCAATATCACGTATCC
646 TTATAAAAATTGGTAA--G-AAGAAAGCCTTTCTTGCGAAACCAAAGCATCAATATCACGTATCC
* * * * *
1958148 TTATGAGAAGACTATGTTTATGGTGCTTAATCTTGAAAAGAATAAGGATTAGTATGAGTATTAAT
708 TTATGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAAT-GGGATTAGTATGACTATTCAT
* * * * * * *
1958213 ATTTGTCTTGTTTAAGAGATAAATTTTGATTCTATCCAAAACGGTGGAAAGATAAGCTTTTCTTG
772 GTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGT-GAAAAAAAAGCTTTTCTTG
* * * * *
1958278 CAACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAAGGTGTTCTTGGTTGCCAATTTTGA
836 CGAGACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTCTTGGTTCCCAATCTTGA
* * *
1958343 AAAGAATGGAGACTGTTTGCGAGAATCGATGCATGTTTTATTTAAGGGAT-
901 AAAGAAAGGAGACTG-TTGCGAGAATCGATGCTTGTCTTATTTAAGGGATA
* * * *
1958393 AACTTTGATTTTAAGGAAAATATGGCAAAGAGAAGATTTCCATGCAAAAGAAAATCTTCAATATC
1 AATTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATC
* * * * *
1958458 GTTTATCCTAATGAGGAGAATGTGTTTATAGTGCTTAATCACAAAAGGAAAGAAGA-TCTTGCTA
66 ATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAAGGAATGAAGATTATTACTA
* * * *
1958522 GAATCTATATTTGTCTCACTTGAGCCACGAACATAGACTTTACAAAAATTGGTGAGAAGAAAGCT
131 GAATCCATATTTGTCTCATTTGAGGCACGAACATAGACTTTACAAAAATTGGTGAGAAGAAAGCC
* *
1958587 TTTCTGGCAAAACCAAAGCATCAATATCCTGTA-CTCTTATGAGAAAACTAAGTTTTTGGTGCCT
196 TTTCTTGCAAAACCAAAGCATCAATATCCTGTATC-CTTATGAGAAAACTAAGTTTATGGTGCCT
*
1958651 AATCCTGAAACGAATGGGCATTAGTATGAGTATTCATGTTGAAAAGAATGGAGACTGTTGGCGAG
260 AATCCTGAAAAGAATGGGC---A-T-T-AG---T-A---TG---AG--T----A---TT--C---
* * ** * *
1958716 AATCGATGCTTGTCTTATTTAA-AGGA-TAACTTTGATTTTAAGGAAAATA-TG-GCAAAGAAAA
295 -AT-G-T--TTGTCTTATTTAAGA-GACAAACTTTGATTCT-ATCAAAA-ACGGTGAAAAGAAAA
* * * * * ** * * * * * *
1958777 GATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATCTGTT-TATGGTG
352 GCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAATGAAGAGAATGTGTTCT-TGGTT
* * * * * * * ** ** * ** * *
1958841 CCTAAT-CAGAAAATGAATGAAGATCT-TAG-TAGAATCTATATTTGTATCATTCGAGGTACGAA
416 CCCAATCCTGAAAA-GAAAGGAGA-CTGTTGCGAGAATCGATGCTTGCCTTATTTAAGGGATGAA
** * * * * * * ** *
1958903 CATAGACTTTACA-G-AAAT-TGG-TAAG-AAAGCTTTTC-TGGCAAAACCAAAGCATCAATATC
479 TTTTGATTTTA-AGGAAAATAGGGCAAAGAAAAGATTTCCAT-GCAAAAGAAAATCATCAATATC
* * * * * ** * * * * * *
1958962 CTGTATCCTTACGA-GAAAACTAAGTTTTTGGTGCCTAATC-CTGAAACGAATG--G-GCATTAG
542 ATTTATCCTAATGAGGAGAA-TGTGTTTATAGTGCCTAATCAC-AAAATGAATGAAGATCATTAC
* * * * * * *
1959022 TATGAGTAT-TCATGTTTGTTTTATTTAAGAG-ACAAAATTTGA-TTCTATCAAAAA-CGGTTGA
605 TA-GA--ATCT-ATGTTTGTCTCATTTGAG-GCACGAACTTAGACTT-TAT-AAAAATTGG-T-A
* * * * * * * * * *
1959083 A-AAAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTACCCTAATGA-AGGGAATGTGT
661 AGAAGAAAGCCTTTCTTGCGAAACCAAAGCATCAATATCACGTATCCTTATGAGA-AGACTATGT
* * * * * * * *
1959146 TTTTGGTTCCCAAT-CTAGAAAAAAAAGGAGACT-GT-TGCGAGC-A-TCAATGCTTGCCTTATT
725 TTATGGTGCCTAATCCT-GAAAAGAATGG-GATTAGTAT--GA-CTATTC-ATGTTTGTCTTATT
* ** * * * * * * * * * * **
1959206 TAAGGGATGAATTTTGATTTTAATGAAAATAAGG-CAAAGAAAAGATTTCCATG-GAAAAGAAAA
784 TAAGAGACAAACTTTGATTCT-ATCAAAA-ACGGTGAAAAAAAAGCTTTTCTTGCG-AGACCAAA
* * * * * * * * * ** *
1959269 TCATCAATATCATTTATCGTAACG-AGGAGAATATGTT-TATAGTGCCGAATC-ACAAAATGAAT
846 GCATCAATGTCATGTATCCTAATGAAGG-GAATGTGTTCT-TGGTTCCCAATCTTGAAAA-GAAA
* * * * ** * * * **
1959331 GAAGA-TCATTACTAGAATCCTTGTTTGTCTTATTTGAGGCACG
908 GGAGACT-GTTGCGAGAATCGATGCTTGTCTTATTTAAGGGATA
* ** * * ** * * * ** * *
1959374 AACTAAGACTTTATA--AAAATTGGTTAGAAG-AAAGCCTTT-CTTGCGAAACCAAAGCGTC---
1 AATTTTGATTTTA-AGGAAAATAGGGCA-AAGAAAAG-ATTTCCATGCAAAAGAAAATCATCAAT
* * * *
1959432 ATC---TATCCTAATGAGAAGACTATGTTTAT-GCTGCCTAATC-CTGAAAA-GAAT-AGGGATT
63 ATCATTTATCCTAATGAGGAGAATGTGTTTATAG-TGCCTAATCAC--AAAAGGAATGA-AGATT
* * * * * * *
1959490 AGTA-T-GACTATTCATGTTTGTCAT-ATTTAAGAG-A-TAAGCTTTGA-TTCTATCAAAAATT-
124 ATTACTAGA--ATCCATATTTGTC-TCATTTGAG-GCACGAA-CATAGACTT-TA-CAAAAATTG
* * * * *** * * * * ** *
1959548 ATTAAAAGAAAAGCTTTTCTTGCGGCACCCAAGCATTATTGTCAAGTATCCTAATGA-AAGGAA-
182 GTGAGAAG-AAAGCCTTTCTTGCAAAACCAAAGCATCAATATCCTGTATCCTTATGAGAA--AAC
** * * * * * * * * * * *
1959611 TGTGTTCT-TGGTTCCCAATCATGAAAATAGTGGAG-A-CAGTTCTGAG-AATCGATGCTGGTCA
244 TAAGTT-TATGGTGCCTAATCCTGAAAAGAATGG-GCATTAG-TATGAGTATTC-ATGTTTGTCT
* ** * ** * * * *
1959672 TATTTAAGAGA-TATTTTTGATTTTAAGGAAAATA-GG-GAAAAGAAAAG-TTTTCCATCCAAAA
305 TATTTAAGAGACAAACTTTGATTCT-ATCAAAA-ACGGTGAAAAGAAAAGCTTTT-CTTGCGACA
** * * * * * * * *
1959733 GAAAATCATCAATATCATTTATCCT-ATCGAGGAGATTGTGTT-TATAGTACCTAATCAC--AAA
367 CCAAAGCATCAATGTCATGTATCCTAAT-GAAGAGAATGTGTTCT-TGGTTCCCAATC-CTGAAA
* * * * * * * * * * * ** * * ** *
1959794 TTGAATGAAGA-TCATTACAAGAATCCATGTTTGACTCATTTGAGTTACGAACTTACACTTTATA
429 -AGAAAGGAGACT-GTTGCGAGAATCGATGCTTGCCTTATTTAAGGGATGAATTTTGATTTTA-A
* * * * ** * * *
1959858 --AAAATTGGTG-AGAAG-AAAGCCTTT-CTTGCGAAACTAAAGCATCAACATCATCTATCCTAA
491 GGAAAATAGG-GCA-AAGAAAAG-ATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAA
* * * ** ** ** * **
1959918 TG-GGAAGACTATATTTATTTTGCCTAATCTTGAAAA-GAATGGGGATTAGGA-T-GACTAT-TC
553 TGAGG-AGAATGTGTTTATAGTGCCTAATC-ACAAAATGAATGAAGATCATTACTAGA--ATCT-
* * * ** * **
1959978 ATGTTTGTCAT-TTTTAAGAG-AC-AAGCTTTGGTTTTATCAAAAA-TGGTAAAAAGAAAAGGTT
613 ATGTTTGTC-TCATTTGAG-GCACGAA-CTTAGACTTTAT-AAAAATTGGTAAGAAG-AAAGCCT
* * * * * * * * *
1960039 TTCTTGC-AGCACCAAAGCATCAATGTTATGTATCCTAATGTAGAA-AATGTGTTCT-TGATTCC
673 TTCTTGCGA-AACCAAAGCATCAATATCACGTATCCTTATG-AGAAGACTATGTT-TATGGTGCC
* * * * * * ** * * **
1960101 CAATCATGAAAAGAAAGGAGGCAATT-GCTA-GA--ATTGACGCTTGTGATATTTCAGGGATGAA
735 TAATCCTGAAAAG-AATG-GG--ATTAG-TATGACTATTCATGTTTGTCTTATTTAAGAGACAAA
* * ** * ** * * * * * ** * *
1960162 -TTTTATTTTAAGAAAAATAGG-GCAAAGTAAAGATTTCCATGCAAAAGAAAATCATCAATATCA
795 CTTTGATTCTATCAAAAA-CGGTG-AAAAAAAAGCTTTTCTTGCGAGACCAAAGCATCAATGTCA
* * * * * * ** ** * * * *
1960225 TTTATCTTAATG-AGGAGAATATGTT-TATAGTACCTAATC-ACAAAATTAATGA-ATATAATTA
858 TGTATCCTAATGAAGG-GAATGTGTTCT-TGGTTCCCAATCTTGAAAAGAAAGGAGA-CT-GTTG
* * * * * **
1960286 CTAGATTCCATGTTTGTCTTATTTAAGGCACG
919 CGAGAATCGATGCTTGTCTTATTTAAGGGATA
* * * * * ** * * ** * *
1960318 AACTTAGACTTTACA--AAAATTGAG-AGGGAGAAAGCCTTT-CTTGGGAAAG-TAATGCGTCAA
1 AATTTTGATTTTA-AGGAAAATAGGGCAAAGA-AAAG-ATTTCCATGCAAAAGAAAAT-CATCAA
** * * * * * *
1960378 TATCACGTATCCTTATGAGAAGACTATGTTTATGGTGCCTAATC-CTGAAA-GAAT-AAGGATTA
62 TATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCAC-AAAAGGAATGAA-GATTA
* * ** * * * * ** * *
1960440 GTA-TATGTATTAATGTTTGTCTTATTTAAGAG-ACAAATTTTGA-TTCTATCCAAAA-TGGTG-
125 TTACTA-GAATCCATATTTGTCTCATTTGAG-GCACGAACATAGACTT-TA-CAAAAATTGGTGA
** * * * * * * * * **
1960500 GAAAGAAAAGTTTTTCTTGCGACACCAAAGCATCAATGTCTTGTATCCTAAAGACAGGAA-TGTG
186 G-AAG-AAAGCCTTTCTTGCAAAACCAAAGCATCAATATCCTGTATCCTTATGAGA-AAACTAAG
* * * * *
1960564 TTCT-TGGTTG-CTAATCTTGAAAAGAATGGAG-ACT-GT-TGGCAAG-AATCGATGCTTGTTTT
248 TT-TATGG-TGCCTAATCCTGAAAAGAATGG-GCATTAGTAT-G--AGTATTC-ATGTTTGTCTT
* * * * ** * * * * * * * * * **
1960623 ATTTAAGGGA-TAACTTTGGTTTTAAGGAAAATA-TG-GCAAAGAACAGATGTCCATGCAAAAGA
306 ATTTAAGAGACAAACTTTGATTCT-ATCAAAA-ACGGTGAAAAGAAAAGCTTTTCTTGCGACACC
* * * *
1960685 AAATCATCAATATCATTTATCCTAATGAGGAGAACGTGTTTATAGTACCTAATCACAAAAGCTTT
369 AAAGCATCAATGTCATGTATCCTAATGAAGAGAA--TG----T-G----T--T--------C--T
* * * * * * * * * ** *
1960750 TGGTGCCTAATCCTGAAACGAATGG-GCATTAG-TGTGACTATTC-ATGTTTGTTTTATTTAAGA
411 TGGTTCCCAATCCTGAAAAGAAAGGAG-ACT-GTTGCGA-GAATCGATGCTTGCCTTATTTAAGG
** * * ** * * * * * ** *
1960812 GACAAAATTTGATTCT-ATCAAAA-ACGGTTG-AAAAAAAAGCTTGT-CTTGCGACACCAAAGCA
473 GATGAATTTTGATTTTAAGGAAAATA-GG--GCAAAGAAAAGATT-TCCATGCAAAAGAAAATCA
* * * * * * * * * * *
1960873 TAAATGTCGTGTACCCTAATGAAGG-GAATGTGTTTTTAGTTCCCAATCTAGAAAA-GAAAGGAG
534 TCAATATCATTTATCCTAATG-AGGAGAATGTGTTTATAGTGCCTAATC-ACAAAATGAATGAAG
* * * * * * * * * * * * *
1960936 A-CTGTTGCGAGAATCAATGCTTGCCTTATTTAAGAG-ATGAATTTTGATTTTA-AGGAAAATAG
597 ATC-ATTACTAGAATCTATGTTTGTCTCATTTGAG-GCACGAACTTAGACTTTATA--AAAATTG
** * * * ** * ** * * *
1960998 GGCA-AAGAAAAG-TTTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAAT
658 GTAAGAAG-AAAGCCTTT-CTTGCGAAACCAAAGCATCAATATCACGTATCCTTATGAGAAGACT
* * * * * * ** *
1961061 ATGTTTATAGTACCTAATCAC--AAAATTAAT-GAATATCGATATTAGAATCCATGTTTGTCTTA
721 ATGTTTATGGTGCCTAATC-CTGAAAA-GAATGGGAT-TAG-TATGACTATTCATGTTTGTCTTA
* * * *** * * * * *
1961123 TTT--GAGGCATGAACTTAGACTT-TA-CAAAAATTGAG-GGGGAGAAAGCCTTTCTTGTGAAAG
782 TTTAAGAGACA--AACTTTGA-TTCTATCAAAAA-CG-GTGAAAAAAAAGCTTTTCTTGCGAGAC
* * * ** * * * * * * * *
1961183 TAATGCATCAATATCACATATCCTTATG-AGAAGACTATGTT-TATGATGCCTAATCCTG-AAAG
842 CAAAGCATCAATGTCATGTATCCTAATGAAG-GGAATGTGTTCT-TGGTTCCCAATCTTGAAAAG
* * * ** *
1961245 AATAAG-GATTAGTAT--GAGTATTAATGTTTGTCTTATTTAAGAGG-TA
905 AA-AGGAGACT-GT-TGCGAGAATCGATGCTTGTCTTATTTAAG-GGATA
*** * * * * * * ** * *
1961291 AATTTTGATTTTATCCAAAAT-GGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGT
1 AATTTTGATTTTAAGGAAAATAGG-GCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATAT
* * ** * * *
1961355 CATGTATCCTAA-GAAGG-GAATGTGTTCT-TGGTTGCC-AATCTTGAAAA-GAATGGAGACTGT
65 CATTTATCCTAATG-AGGAGAATGTGTT-TATAG-TGCCTAATC-ACAAAAGGAATGAAGATTAT
* * * ** * * * * * * * *
1961415 TGGCGAGAATCGATGCTTATCTTATTTAAGGGA-TAACATTGAATTTA-AGGAAAATATGG-CA-
126 T-ACTAGAATCCATATTTGTCTCATTTGAGGCACGAACATAGACTTTACA--AAAAT-TGGTGAG
** * ** * * * * * **
1961476 AAGAAAAGATTTTCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAA-TGTGTT
187 AAG-AAAGCCTTTCTTGCAAAACCAAAGCATCAATATCCTGTATCCTTATGA-GAAAACTAAGTT
* * * * * * *
1961540 TATAGCGCCTAATCAC--AAAAGGAATGAAG-ATCT--TACT-AG-AATCTATATTTGTGTCATT
250 TATGGTGCCTAATC-CTGAAAA-GAATG-GGCAT-TAGTA-TGAGTATTC-ATGTTTGTCTTATT
* * * * * * *
1961598 TGAG-GCACGAA-TATAGACTT-TA-CAAAAATTGGTGAGAAG-AAAGCTTTTCTGGCGAAACCA
309 TAAGAG-ACAAACT-TTGA-TTCTATCAAAAA-CGGTGAAAAGAAAAGCTTTTCTTGCGACACCA
* * * * * ** * *
1961658 AAGCATCAATCTCCTATATCCTTATG-AGAAAACTAAGCTT-TTGGTGCCTAATCCT-AAAACGA
370 AAGCATCAATGTCATGTATCCTAATGAAGAGAA-TGTG-TTCTTGGTTCCCAATCCTGAAAA-GA
* * ** * ** * * * * * *
1961720 ATGG-GCATTAGTAT--GAGTTTTC-ATGTTTGTTTTTTTTAAGAGACAGAA-TTTAATTCT-AT
432 AAGGAG-ACT-GT-TGCGAG-AATCGATGCTTGCCTTATTTAAGGGA-TGAATTTTGATTTTAAG
* * * * * * * ** * * * *
1961779 CAAAA-ACGGTTG-AAAAAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTACCCTAAT
492 GAAAATA-GG--GCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAAT
* * * * * * * * ** * *
1961842 GAAGG-GAATATGTTTTTGGTTCCCAATCTATAAAA-GAATGGAGA-CTGTTAGGACAATCAATG
554 G-AGGAGAATGTGTTTATAGTGCCTAATC-ACAAAATGAATGAAGATC-ATTACTAGAATCTATG
* * * * * * * * * * ** * *
1961904 CTTGCCTTATTTAAGGGATGAATTTTGATTTTA-AGGAAAATAGGGCA-AAGAAAAG-ATTTCCA
616 TTTGTCTCATTTGAGGCACGAACTTAGACTTTATA--AAAATTGGTAAGAAG-AAAGCCTTT-CT
* ** * * ** * * * * * *
1961966 TGCAAAAGAAAATCATCATTATCATTTATCCTAACGAGGAGAATGTGTTTATAGTGCCTAAT-C-
677 TGCGAAACCAAAGCATCAATATCACGTATCCTTATGAGAAGACTATGTTTATGGTGCCTAATCCT
* * * * * * *
1962029 -ACAA-AAT-GAATTAAGAACATTACTAGGTTCCTTGTTTGTCTTATTTGAG-GCACAAACTTAG
742 GAAAAGAATGGGATT-AG--TATGACTA--TT-CATGTTTGTCTTATTTAAGAG-ACAAACTTTG
* ** * * * * * * * ** *
1962090 ACTT-GAT-AAAAATTAGTTAGAAGAAAGCCTTTCTTGCAAAACGAAAGCATCAACATCATCTAT
800 A-TTCTATCAAAAA-CGGTGAAAAAAAAGCTTTTCTTGCGAGACCAAAGCATCAATGTCATGTAT
* * * * * * *
1962153 CTTAATG-AGAGGACTATGTT-TTTGTTGCCTAATCTTGAAAAGAATTGG-GATTAGTAT--GAC
863 CCTAATGAAG-GGAATGTGTTCTTGGTT-CCCAATCTTGAAAAGAA-AGGAGACT-GT-TGCGA-
* * * * *
1962213 TATTC-ATGTTTGTCATATTTAAGAGATA
922 GAATCGATGCTTGTCTTATTTAAGGGATA
* * * ** * * * * * *** *** * *
1962241 AGTTTTCATTCT-ATCAAAA-ACGATGAAAAGAAAAGCTTTTCTTGCGGCACCCAAGCATCAATG
1 AATTTTGATTTTAAGGAAAATA-G-GGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATA
* * * * ** *
1962304 TCATGTATCCTAATGAAGG-GAATGTGTTCT-TGGTTCCCAATCTTGAAAA-GAATGGAGA-TAG
64 TCATTTATCCTAATG-AGGAGAATGTGTT-TATAGTGCCTAATC-ACAAAAGGAATGAAGATTA-
* * ** * * * ** * * *
1962365 TT-GTGAGAATCGATGGTGGTCAT-ATTTAAGAG-A-TAATTTTTGATTTTA-AGGAAAATAGG-
125 TTACT-AGAATCCATATTTGTC-TCATTTGAG-GCACGAA-CATAGACTTTACA--AAAATTGGT
* * * ** * * * * * * *
1962424 GCA-AAGAAAAG-TTTTCCATCCAAAAGAAAATCATCATTATCATTTATCC-TATCGAGGAGATT
184 G-AGAAG-AAAGCCTTT-CTTGCAAAACCAAAGCATCAATATCCTGTATCCTTAT-GAGAAAACT
** * * * * * ** * * * *
1962486 GTGTTTATAGTGCCTAAT-C-AAAAATTGAATGAAG-ATCATTACAAGCATCCATGTTTGACTCA
245 AAGTTTATGGTGCCTAATCCTGAAAA--GAATG-GGCATTAGTATGAGTATTCATGTTTGTCTTA
* ** * ** ** * * *
1962548 TTTGAGTTACAAACCTACACTT-TA-CAAAAATTTGTGAGAAG-AAAGCCTTTCTTGCGAAACCA
307 TTTAAGAGACAAACTTTGA-TTCTATCAAAAA-CGGTGAAAAGAAAAGCTTTTCTTGCGACACCA
** ** * * * * * *
1962610 AAGCATCAACATTGTCTATCCTAATG-AGAAGACTATGTT-TAT-GTTGCCTAATCTTAAAAAGA
370 AAGCATCAATGTCATGTATCCTAATGAAG-AGAATGTGTTCT-TGGTT-CCCAATCCTGAAAAGA
* * * ** * * * * * * **
1962672 ATGGGGA---TTACGATGACTATTAATGCTTGTCATT-TTTGAGAGA-CAAGCTTTGATTCTATC
432 AAGGAGACTGTTGCGA-GA--ATCGATGCTTG-CCTTATTTAAGGGATGAA-TTTTGATTTTAAG
* ** * * * ** ** * * *
1962732 AAAAAT-GGTAAAAAGAAAAGTTTTTCTTGCAGCACCAAAGCATCAATGTCATGTATCCTAATGA
492 GAAAATAGG-GCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGA
* * * * * ** *
1962796 AGAAAATGTGTTCT-TGGTTCCTAATCTTGA-AAAAAG-ATG-AGA-CAATTGTTAGAATC-AGA
556 GGAGAATGTGTT-TATAGTGCCTAATC---ACAAAATGAATGAAGATC-ATTACTAGAATCTA-T
* * * * * * ** * * * **
1962855 GCTTGTGAT-ATTTAAGGGATGAATTTTTA-TTT-TAAGGAAAATAGTGCA-AAGAAAGGATTTT
615 GTTTGT-CTCATTTGAGGCACGAACTTAGACTTTATAA--AAATTGGT-AAGAAGAAA-GCCTTT
* * ** ** ** ** * * * * ** *
1962916 CATGCAAAAGAAAATG-ATCAATATCATTTATCCCAACAAGGAGAATGTTTTTAAAGTTCCTAAT
675 CTTGCGAAACCAAA-GCATCAATATCACGTATCCTTATGAGAAGACTATGTTTATGGTGCCTAAT
* * * * * * * *
1962980 CAC--AAAATGAATGAAGATCATTACTAGA--ATCCTTGTTTGTCTCATTTGAG-GCACGAACTT
739 C-CTGAAAA-GAATG-GGATTAGTA-T-GACTATTCATGTTTGTCTTATTTAAGAG-ACAAACTT
* ** * * * * * * * ** *
1963040 AGACTT-TATCAAAATTGGTCAGAAGAAAGCGTTTCTTGTGAAACCAAAGCATTAACATCATCTA
798 TGA-TTCTATCAAAAACGGTGAAAAAAAAGCTTTTCTTGCGAGACCAAAGCATCAATGTCATGTA
* * * * * * *
1963104 TCCTAATG--GGAAGACTATGTT-TAT-GTTGCCTAATCTTAAAAAGAATGGGGA-T-TAG-GAT
862 TCCTAATGAAGG--GAATGTGTTCT-TGGTT-CCCAATCTTGAAAAGAAAGGAGACTGTTGCGA-
** * * *
1963162 GACTATTAATGTTTGTCATT-TTTAAGAGACA
922 GA--ATCGATGCTTGTC-TTATTTAAGGGATA
** * *** ** * * ** ** *
1963193 AGCTTTGATTCTATCAAAAAT-GGTAAAAAGAAAAGCCTTT-CTTGCAAACTAATGTGC--CGAT
1 AATTTTGATTTTAAGGAAAATAGG-GCAAAGAAAAG-ATTTCCATGCAAAAGAAAAT-CATCAAT
* * * ** * * * * ** *
1963254 ATCGTGTATCCTTATGACAAGACTATGCTTATGGTGCCTAATCTTGAAAA-GAAT-AAGGATTAG
63 ATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATC-ACAAAAGGAATGAA-GATTAT
* ** * * * * ** * * *
1963317 TA-TGAGTATTAATGTTTGTCTTATTTAAGAG-ACAAATTTTGA-TTCTATCTAAAA-CGGTG-G
126 TACT-AGAATCCATATTTGTCTCATTTGAG-GCACGAACATAGACTT-TA-CAAAAATTGGTGAG
** * * * * * **
1963377 AAAGAAAAG-CTTTCCTTGTGACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAAGGT--
187 -AAG-AAAGCCTTT-CTTGCAAAACCAAAGCATCAATATCCTGTATCCTTATG-A-GAAAACTAA
* ** * ** ** ** ** * ***
1963439 GTTTTTGGTTGCC-AAT-AAGAGATAA-ATTTTG-ATTCTA-TCCAAAAGGGTGGAAAGAAAAG-
247 GTTTATGG-TGCCTAATCCTGA-A-AAGAATGGGCA-T-TAGT--ATGAGTAT-TCATG-TTTGT
** * * ** ** ** ** *
1963498 CTT-TGCTTCTGACACCAAAGCATCAATGTCATGTATC-CTAA---TGAAGGGAATGTGTTTTTG
303 CTTAT--TTAAGAGA-CAAA-CTTTGAT-TC---TATCAAAAACGGTGAAAAGAA-AAGCTTTT-
* * * * * * * * *
1963558 GTTGCGA-ATCTTGAAAAGAATGGAGACTGTTGGCAAGAATCGATGCTTGTTTTATTTAAGGGAT
358 CTTGCGACA-C---CAAAGCAT-CA-A-TG-T--CATG--T--AT-C-----CTAATGAA--GAG
* ** * * * * *
1963622 AACTTTGATT-TTAAGG---AAAAT-CTGGCAAATAAA--AGATTTGCATGCAAAAGAAAATC-A
401 AA-TGTG-TTCTT--GGTTCCCAATCCT-GAAAAGAAAGGAGA-CTG-TTGC----GAGAATCGA
* * * * * * *
1963679 T-CAATAT-CATTTATCCTAATGAGGA-GAA-TGTG-TTTATAATGCCTAATCACAAAAGGAATG
455 TGC--T-TGC-CTTAT-TTAA-G-GGATGAATTTTGATTT-TAA-G--GAA--A-ATAGGGCA--
* *** ** *** ** * * **
1963739 AAGATCTTACTAGAATCTATGTTTGTCTCATTTAAGGCA-CGAACATAGACTTTA-CAAAAATTG
504 AAGA----A-AAG-AT-T-TCCATG-CAAAAGAAAATCATC-AATAT-CA-TTTATC-CTAA---
* * * * * * ** * * *
1963802 GTGAGAAGAAAGCT-TTTATGGTGAAACCAAAGCATCAATAT-CCTG--TATCCTT-GTGAGGTA
553 -TGAGGAGAATG-TGTTTATAGTG---CCTAATCA-CAAAATGAATGAAGATCATTACT-A-G-A
* * * * * * ** * * * *
1963862 A-CTAAGTTTTTGGTGCCTAATCCTGAAATGAATGGGCATTAGTA-TGAGTATTAATATTTGTTT
609 ATCT-A-TGTTT-GT--CTCAT-TTG--AGGCACGAAC-TTAG-ACT--TTA-TAAAAATTG--G
* * * * * ** * * * **
1963925 TATTTAAAAGACAAACTTTGATTCTAT-C-AAA--AACGGC-TGAA-AAAAAGCTTTTCTTGCG-
659 TA---AGAAGA-AAGC-CT--TTCT-TGCGAAACCAA-AGCATCAATATCACG-TATCCTTATGA
* * * * ** * * * * * *
1963983 GCA-CCAAAGCATCAAT-GT-CATGTATCCT--AATGAA-GGGA--A-TGTG--T-TT-TTGGTT
714 GAAGACTATG--TTTATGGTGCCT-AATCCTGAAAAGAATGGGATTAGTATGACTATTCATGTTT
* * * * * * * * *
1964035 G-C-CA-ATAAGAGATAAATTTTGATTCTATCCAAAATGATGAAAAGAAAAGCTTTTCTTACGAC
776 GTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGAAAA-AAAAGCTTTTCTTGCGAG
* * * * * * * *
1964097 ACCAAAGCATCAATGTCATGTATCCTAAAGAAAGGAATGCGTTATGGGTTCCCATTATTAAAAAG
840 ACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTCTTGGTTCCCAATCTTGAAAAG
* * * * ** * * *
1964162 AATGGAGACAGTTGCAAGAATCAATGCTTGTGATATTGAAAGGATG
905 AAAGGAGACTGTTGCGAGAATCGATGCTTGTCTTATTTAAGGGATA
* ** *
1964208 AATTTTGA-TTT--------T------AAGAAAAGATTTCAACACAAAAAAAAATCATCAATATC
1 AATTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATC
* ** * *
1964258 AATTATCCTAATGAGGAGAATGTGTTTATAGCCCCTAATCATAAAAGGAATG-AG-TGTCATTAA
66 ATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAAGGAATGAAGAT-T-ATTAC
* * * * * * *** *
1964321 TAGAATCCATGTCTGTCTCATTTGGGGCATGAACTTACACTTTATGGAAATTGGTGGGAAGAAAG
129 TAGAATCCATATTTGTCTCATTTGAGGCACGAACATAGACTTTACAAAAATTGGTGAGAAGAAAG
* * * * * * * ** * *
1964386 CTTTTCTTACAAAACAAAATCGTAAATATCGC-GTATCCTTTTGAGACGACTATGTTTACGGTGC
194 CCTTTCTTGCAAAACCAAAGCATCAATATC-CTGTATCCTTATGAGAAAACTAAGTTTATGGTGC
* * *
1964450 CTAATCTTGAAAAGAATAGGG-ATTAGTATGAGTATTAATGTTTGTCTTATTAAAGAGACAAACT
258 CTAATCCTGAAAAGAAT-GGGCATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACT
* * * *
1964514 TTGTTTCTATAAAAAACAGTTGAACA-AAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATG
322 TTGATTCTATCAAAAAC-GGTGAAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATG
* * * * * *
1964578 TATCCTAAGGAAGGGAATGTGTTCTGGGTTCCCAAT-CTAGAAAGGAGTA-GAGA-TAGTTACGA
386 TATCCTAATGAAGAGAATGTGTTCTTGGTTCCCAATCCT-GAAAAGA-AAGGAGACT-GTTGCGA
* *** * *
1964640 CAATCGATGCTTGTGATATTTAAGGGATGAATTTGGATTTTAGGGAAAATAGGGCAAAGAAAAGA
448 GAATCGATGCTTGCCTTATTTAAGGGATGAATTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGA
* * * *
1964705 TTTCAATGCAAACA-AAAATCCTCAATATCAATTATACTAATGAGGAGAATGTGTTTATTA-TGC
513 TTTCCATGCAAA-AGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTA-TAGTGC
* * *
1964768 CTAATCACAAAATGAATGAATATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACAAACTT
576 CTAATCACAAAATGAATGAAGATCATTACTAGAATCTATGTTTGTCTCATTTGAGGCACGAACTT
* * ** * * * * * * **
1964833 TGACTTTATAAAAAATTAGTGGGAAGAAATCTTTTCGTACGAAACCAATGCGTCAATATCGTGTA
641 AGACTTTAT-AAAAATTGGTAAGAAGAAAGCCTTTCTTGCGAAACCAAAGCATCAATATCACGTA
* * *
1964898 ACCTTATGAGAAGACTATGTTTATGGCGCCTAATCCTGAAAAGAATAGGGATTAGTATGAGTATT
705 TCCTTATGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAAT-GGGATTAGTATGACTATT
* * * * ** * *
1964963 AATGTTTGTCTTATTAAAGAGACAAACTTTGTTTCTATCAAGAACAATTGAAAGAAAAGCTTTCC
769 CATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAAC-GGTGAAAAAAAAGCTTTTC
* * * *
1965028 TTGTGACACCAAAGCTTCAATGTCATGTATCCTAATGAAGGGAATGTGTTCTTAGTTCCCAATCT
833 TTGCGAGACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTCTTGGTTCCCAATCT
* * * * * *
1965093 TGAAAAGAATGGAGACAGTTACGAGAATCGATGCTTGTCATATTTAAGAGATG
898 TGAAAAGAAAGGAGACTGTTGCGAGAATCGATGCTTGTCTTATTTAAGGGATA
* * * *
1965146 AATTTTGATTTTAAGGAAAATAGGGCATAGGAATGATTTCTATGCAAAAGAAAATCATCAATATC
1 AATTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATC
* * * * * * * ** *
1965211 TTTTATCCTAATGAGGAGAATGTGTTTTTCGTGCCTATTCACAAAATGTATGTAGATCGTTAGTA
66 ATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAAGGAATGAAGATTATTACTA
* * * * *
1965276 GAATCCATATTTGTCTCGTTTGAAGCGCCAACTTAGACTTTACAAAAATTGGTTG-GAAGAAAGC
131 GAATCCATATTTGTCTCATTTGAGGCACGAACATAGACTTTACAAAAATTGG-TGAGAAGAAAGC
* ** * * * * *
1965340 CTTTCTTGGAAAACCAAAGTGTCATTATCATGTATCTTTATGAGAAGACTGAGTTTATGGTGCCT
195 CTTTCTTGCAAAACCAAAGCATCAATATCCTGTATCCTTATGAGAAAACTAAGTTTATGGTGCCT
* * * * * * *
1965405 AATCAC-GAAAAAAATGGGGATTAGTATAAGTATTCATTTTTATTTTATTTAAGAGATAAACTTT
260 AATC-CTGAAAAGAATGGGCATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTT
* * *
1965469 GATTCTATCAAAAACGGTTGAAAAG-AAACCTTTTCTTGTGAC-CCTAAATCATCAATGTCATGT
324 GATTCTATCAAAAACGG-TGAAAAGAAAAGCTTTTCTTGCGACACC-AAAGCATCAATGTCATGT
* * * * * * * *
1965532 ATCCTAATGAAG-GAAAAGTGTTTTTGGTCCCCAAT-CTCAAAATGAATGGAGACCGTTACAAGA
387 ATCCTAATGAAGAG-AATGTGTTCTTGGTTCCCAATCCTGAAAA-GAAAGGAGACTGTTGCGAGA
* * * *
1965595 ATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAAGAAAATAGGGGAAAGAAAAGATT
450 ATCGATGCTTGCCTTATTTAAGGGATGAATTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATT
* * * * * **
1965660 TTCATGCAAAAG-AAATCCATCAATATCACTTATCCTATTTAGGAGAATGTGCTTATAGTTTCTA
515 TCCATGCAAAAGAAAAT-CATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTA
* * * ** * *
1965724 ATCAAAAAATGAATGAAGATCATTAATAGAATCCACATTTGTCTCATTCGAGGCACGAACTTACA
579 ATCACAAAATGAATGAAGATCATTACTAGAATCTATGTTTGTCTCATTTGAGGCACGAACTTAGA
* * ** ** * **
1965789 CTTTACAAAAATAGGTGGGATA-AAAGCCTTTCTTGTAAAACAAAAGCATCAATATTGTC-TATC
644 CTTTATAAAAATTGGTAAGA-AGAAAGCCTTTCTTGCGAAACCAAAGCATCAATA-TCACGTATC
** * * * * * * *
1965852 CGAATAAGGAGACTATGTTTATGGAGACTAATCTTGAAAAGAATGGGGATTAGTATGGCTATTCT
707 CTTATGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAAT-GGGATTAGTATGACTATTCA
* *
1965917 TGTTTGTCTTATTTAAGAGACAAACTTCGATTCTATCAAAAATGGTGAAAAGAAAA-CTTTTTCT
771 TGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGAAAA-AAAAGC-TTTTCT
* * * * * * * *
1965981 GGCGACATCAAAGCATCAATGTCATGCATCCTAGTGAAGGGAAAGTGTTTTTGGTTCCTAATCTT
834 TGCGAGACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTCTTGGTTCCCAATCTT
* * ** * *
1966046 GAAACGAATGGAGACTGTTTTGAGAATAGATGCTTGTCTTATTTAAGGGATG
899 GAAAAGAAAGGAGACTGTTGCGAGAATCGATGCTTGTCTTATTTAAGGGATA
* * * *
1966098 AACTTTGATTTTTAGAAAAATAGGGCAAAGAAAAGATTT-CACGCAAAAG-AAATCCATCAATAT
1 AATTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAAT-CATCAATAT
* * *** * *
1966161 CATTTTTCCTAATTAGGAGAATGTGTTTATAGTTTTTAGTCA-AAAAGTGAATGAAGATCATTAC
65 CATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAAG-GAATGAAGATTATTAC
* * * * * * *
1966225 TAGAATCCATGTTTGTCTCATTTGAGGCTCGAACTTACACTTTACAAAAATAGGTGGGACGAAAG
129 TAGAATCCATATTTGTCTCATTTGAGGCACGAACATAGACTTTACAAAAATTGGTGAGAAGAAAG
* * * * * * * * * * *
1966290 CCTTTCTTGCAAAGCCAAAGCATTAATATCATCTATCCTAAAGAGGAGATTATGTTTATGGAGCC
194 CCTTTCTTGCAAAACCAAAGCATCAATATCCTGTATCCTTATGAGAAAACTAAGTTTATGGTGCC
* * * *
1966355 TAATCCTGAAAAGAATAGGG-AATAATATG-GCTATTCTTGTTTGTCTTATTTAAGAGAC-AACC
259 TAATCCTGAAAAGAAT-GGGCATTAGTATGAG-TATTCATGTTTGTCTTATTTAAGAGACAAACT
* * * * * * *
1966417 TTGATTTTATCAAAAATGGCGGAAAGAAAA-CTTTTTCTTGTGACACCAAAGCATTAATGTCACG
322 TTGATTCTATCAAAAACGGTGAAAAGAAAAGC-TTTTCTTGCGACACCAAAGCATCAATGTCATG
* * * ** * *
1966481 TATCCTAATGAAGGGAATGTGTTCTCGGTTCCCAATCATGAAAAGAATTGAGATTGTTACGAGAA
386 TATCCTAATGAAGAGAATGTGTTCTTGGTTCCCAATCCTGAAAAGAAAGGAGACTGTTGCGAGAA
* * * * *
1966546 TAGATGCTT-CTCTTATTTAAGGGATGAATTTGGATTTTAAGAAAAATAGGGCAAAGGAAACATT
451 TCGATGCTTGC-CTTATTTAAGGGATGAATTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATT
* * * * *
1966610 TCCATGTAAAAGAAAATCATCAATATCATTTACCCTAAAGAAGAGAATGTGTGTATAGTGCCTAA
515 TCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAA
* * * * * * *
1966675 TCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGACTGATTTGAGGTATGAATTTATAC
580 TCACAAAATGAATGAAGATCATTACTAGAATCTATGTTTGTCTCATTTGAGGCACGAACTTAGAC
* ** * *
1966740 TTTACAAAAATTGGTGTGAAGAAAGCCTTTCTTGTGAAACCAAAGCATCAATATCGTC-TATCCT
645 TTTATAAAAATTGGTAAGAAGAAAGCCTTTCTTGCGAAACCAAAGCATCAATATC-ACGTATCCT
* * * * * * * *
1966804 AATGAGAAGACTATGTTTATGGTGTCTAATCCTAAAAATAGTGGACATTAGTGTGACTATTGATG
709 TATGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATGG-GATTAGTATGACTATTCATG
* * ** * * **
1966869 TTTGTCTTTTTTAAGAGACAAACTATGATTCTAAGAAAAACGATTGAAAGAAAAGCTTTTCTTAT
773 TTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACG-GTGAAAAAAAAGCTTTTCTTGC
* * * * * * * *
1966934 GACACCAAAGCGTCAATGTCAT-TATCGTAATGAAGGAAATGTCTTTTTAGTTCCCAATCTGGAA
837 GAGACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTCTTGGTTCCCAATCTTGAA
* * * * * *
1966998 AAGAATGTAGACTGTTACGAGAATC-ACTACTTGCCATATTTAAGGGATA
902 AAGAAAGGAGACTGTTGCGAGAATCGA-TGCTTGTCTTATTTAAGGGATA
* * * *
1967047 AACTTTGATTTTAAGGAAAATAGGGCAAAGGAAACATTTCCATGCAAAAGAAAATCATCAATGTC
1 AATTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATC
* * * ** * *
1967112 ACTTACCCTAATGACGAGAATGTGTTTATTTTGCCTAATCACAAAATGAATGAAGATCATTACTA
66 ATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAAGGAATGAAGATTATTACTA
* * * * *
1967177 GAATCGATGTTTGTCTCATTTGAGGCATGAAC-TTGCACTTTACAAAAATTGGTGGGAAGAAAGC
131 GAATCCATATTTGTCTCATTTGAGGCACGAACATAG-ACTTTACAAAAATTGGTGAGAAGAAAGC
** * * * * * *
1967241 C-TTCATTGTGAAACCAAAGCATTACTATCATGTATCCATGTGAGAAGACTAAGTTTATGGTGCC
195 CTTTC-TTGCAAAACCAAAGCATCAATATCCTGTATCCTTATGAGAAAACTAAGTTTATGGTGCC
* * * * *
1967305 TAATCTTAAAAAGAATGGG-ATTAATATGACTATTCATGTTTGTCTTATTAAAGAGACAAACTTT
259 TAATCCTGAAAAGAATGGGCATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTT
* * * *
1967369 GATTATATCAAAAACAGTTG-AAAGGAAAGCTTTTCTTGTGACACCAAAGCATCAATGTCATGTA
324 GATTCTATCAAAAAC-GGTGAAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTA
* * * * * * **
1967433 TCCTAATGAAGGGAATATGTTCTTGGTTCCCAATCTTGAAAATAAAGAAGAATGTTATGAGAATC
388 TCCTAATGAAGAGAATGTGTTCTTGGTTCCCAATCCTGAAAAGAAAGGAGACTGTTGCGAGAATC
* * * * * * *
1967498 GATGTTTGTCATATTTAAGAGATGAATTGTGA-TTTATGAAAAATAGGAG-AAAGAAAAGATTTC
453 GATGCTTGCCTTATTTAAGGGATGAATTTTGATTTTAAGGAAAATAGG-GCAAAGAAAAGATTTC
* * * * * * * * *
1967561 AACGCAAAATAAGATCATCACTATCATTTATCTTAACGAGGAGAATGCGTTTAGAGTGCCTAATC
517 CATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATC
* * * * *
1967626 ACAAAAGGAATGAAGATCATTACT-GAAATCCATGTGTGACTTATTT-------G-A-TT--AC-
582 ACAAAATGAATGAAGATCATTACTAG-AATCTATGTTTGTCTCATTTGAGGCACGAACTTAGACT
* * * * * *** *
1967678 ----AAAAATTGGGAGGAAGAAAGCCTTTATTGTGAAACCAAAGCATCAATGTCGTTTATCCCTA
646 TTATAAAAATTGGTAAGAAGAAAGCCTTTCTTGCGAAACCAAAGCATCAATATCACGTATCCTTA
* * *
1967739 CGAGAAGACTATGTTTATGGTGCCTAATCTTGAAAATAATGGGGATTAGTATGACTATTCATGTT
711 TGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAAT-GGGATTAGTATGACTATTCATGTT
* * * *
1967804 TATCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGGGAAGAAAAGCTTTTCTTGTGA
775 TGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGT-GAAAAAAAAGCTTTTCTTGCGA
* * *
1967869 CACCAAAGCATCAATGTCATGTATGCTAATAAAGGGAATGTGTTCTTGGTTCCCAATCTTGAAAA
839 GACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTCTTGGTTCCCAATCTTGAAAA
* * * * * * * *
1967934 GAATGGAGAATATTACGAGAATCAATGCTGGTCACT-TTTAAGGGATG
904 GAAAGGAGACTGTTGCGAGAATCGATGCTTGTC-TTATTTAAGGGATA
* * * *
1967981 AATTTTGATTTTAAGGAAAATAGGGCAAAGGAAAGTTTTCCATCCAAAAGAAATTCATCAATATC
1 AATTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATC
* * * * * * * *
1968046 ATTTATCCTAATTAGGAGAATGTATTTATTGCGCCTTATCACAAAACGAATGAAGATCACTACTA
66 ATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAAGGAATGAAGATTATTACTA
* * * * * *
1968111 GAATCCATGTTTATCTCA-TTGAGGCACGAACTTAGTCTTTATAAAAATTGGT-AGGAAGAATGC
131 GAATCCATATTTGTCTCATTTGAGGCACGAACATAGACTTTACAAAAATTGGTGA-GAAGAAAGC
* ** * * * *
1968174 CTTTCTAGCAAAACCAAAGCATCAATATTGTCTATCCTAATGAGAAGACTACGTTTATGGTGCCT
195 CTTTCTTGCAAAACCAAAGCATCAATATCCTGTATCCTTATGAGAAAACTAAGTTTATGGTGCCT
* * * * *
1968239 AAT-TTGGAAAAGAGTGAGG-ATTAGTATGATTATTCTTATTTGTCTTATTTAAGAGAGCAAACT
260 AATCCT-GAAAAGAATG-GGCATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGA-CAAACT
** * * * *
1968302 TTGATTCCGTCAAAAACGATAAAAACAAAAGCTTTTCTTGTGACACCAAAGCATCAATGTCATGT
322 TTGATTCTATCAAAAACGGTGAAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGT
* * * *
1968367 ATCCTAATGAAG-GTAATGTGTTCTTAGTTCCCAATCTTGAAAA-ATATGGAGACTGTTACGAGA
387 ATCCTAATGAAGAG-AATGTGTTCTTGGTTCCCAATCCTGAAAAGA-AAGGAGACTGTTGCGAGA
* * * * * *
1968430 ATCGATGCTTGCCATATTTAAGAGATAAATTTTTATTTTAAGGAAAATAGGGTAAAGGAAAGATT
450 ATCGATGCTTGCCTTATTTAAGGGATGAATTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATT
* * * *
1968495 TTCATGCAAAA-AAAATTCATCAATATCAATTATCCTAATGAGGAGAATGTATTTATCGTGCCTA
515 TCCATGCAAAAGAAAA-TCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTA
* * * * * * * *
1968559 ATCACAAAATGTATAAATATCATTACTAGAATCCACGTTAGTCTCATTTGAGGCACGAAATTATA
579 ATCACAAAATGAATGAAGATCATTACTAGAATCTATGTTTGTCTCATTTGAGGCACGAACTTAGA
* ** * * * * **
1968624 CTTTACAAAAATTGGTGGGAAGAAAGCCTTTCTTGCAAAATCGAAGCGTCAATATCGTGTATCCT
644 CTTTATAAAAATTGGTAAGAAGAAAGCCTTTCTTGCGAAACCAAAGCATCAATATCACGTATCCT
* * *
1968689 TATG-GAAAGACTAAGTTTATGGTGCCTAATCCTGAAAAAAAATAGGGATTAGTATGAGTATTCA
709 TATGAG-AAGACTATGTTTATGGTGCCTAATCCTG-AAAAGAAT-GGGATTAGTATGACTATTCA
* * * * ** * * * * *
1968753 TTTTTGT-TGTATTTAAAAGAAAAACTATGATTCTGCCAAAAATAGTTGAAAGAAAACCATTTCT
771 TGTTTGTCT-TATTTAAGAGACAAACTTTGATTCTATCAAAAA-CGGTGAAAAAAAAGCTTTTCT
** * * * * * * ** *
1968817 TATGACACCAAACCATCAATGTCATGTATCCCAAAGAAGGGAAAGTGTTTTTGCATCCTAATCTT
834 TGCGAGACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTCTTGGTTCCCAATCTT
* * * * ****
1968882 GAAACGAATGAAGACTATAAAAAGAATCGATGCTTGTCTTATTTAAGGGA-A
899 GAAAAGAAAGGAGACTGTTGCGAGAATCGATGCTTGTCTTATTTAAGGGATA
* * * * *
1968933 GAACTTTGATTTTAA-AAAAAGTAGGACAAAGAAAAGATTTTCATGCAAAAG-AAAGCATCAATA
1 -AATTTTGATTTTAAGGAAAA-TAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATA
* * * * * *
1968996 TCATTTAACCTAATTAGGAGAATGTGTTTATAGTTCCTAATCAAAAAATGAATGAAGATCATTAC
64 TCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAAGGAATGAAGATTATTAC
* * ** * * * *
1969061 TAGAATCCATGTTTGTTTCATTTGAGGCACGAATTTACACTTTACAAAAATGGGTGGGACGAAAG
129 TAGAATCCATATTTGTCTCATTTGAGGCACGAACATAGACTTTACAAAAATTGGTGAGAAGAAAG
** ** * * * * * * * *
1969126 CCTTTCTTGCAAAATTAAAGTGTCAATATCATCTATCCTAATAAGGAGACTATGTTTATGGAGCC
194 CCTTTCTTGCAAAACCAAAGCATCAATATCCTGTATCCTTATGAGAAAACTAAGTTTATGGTGCC
* * * *
1969191 TAATCCTGAAAAGAGTTGGG-ATTACTAT-AGATATTCTTGTTTGTCTTATTTTAGAGACAAACT
259 TAATCCTGAAAAGA-ATGGGCATTAGTATGAG-TATTCATGTTTGTCTTATTTAAGAGACAAACT
* * * *
1969254 TTGATTCTATCAAAAAACAGTGGAAAGAAAA-CTTTTTCTTGTGACAGCAAAGCATCAATGTCAT
322 TTGATTCTATC-AAAAACGGTGAAAAGAAAAGC-TTTTCTTGCGACACCAAAGCATCAATGTCAT
* * * * * * **
1969318 TTATCCTAATGAAGGGAATGTGTTTTTGGATCCCAATCAC-GAAAA-AATGGCGACTGTTATGAG
385 GTATCCTAATGAAGAGAATGTGTTCTTGGTTCCCAATC-CTGAAAAGAAAGGAGACTGTTGCGAG
* * * *
1969381 AATCGATGCTTGCCTTATTTAAGGGATGAACTTTGATTTTAAAGAAAATAGGGCAAAGGAAACAT
449 AATCGATGCTTGCCTTATTTAAGGGATGAATTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGAT
* * * *
1969446 TTCCATGCAAAAGAAAATCATCAACATAATTTATCTTAATGAAGAGAATGTGTTTATAGTGCCTA
514 TTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTA
* * * * *
1969511 ATCACAAAATGAATGAAGATCAATACTAGAATCCATGTTTGACTTATTTGAGGCACGAACTTA-C
579 ATCACAAAATGAATGAAGATCATTACTAGAATCTATGTTTGTCTCATTTGAGGCACGAACTTAGA
* ** * * * ** * *
1969575 CGTTTACAAAAATTGGTGGGAAGAAAACCTTTCTTG-TAAAGCCAATGTGTTAATATCATGTATC
644 C-TTTATAAAAATTGGTAAGAAGAAAGCCTTTCTTGCGAAA-CCAAAGCATCAATATCACGTATC
* * * *
1969639 CTTATGAGAAGGCTATGTTTAGGGTGCCTAATCCTGAAAAGAATAGGGATTAGTATGAGTATTAA
707 CTTATGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAAT-GGGATTAGTATGACTATTCA
* * * * *
1969704 TGTTTGTCTTATTTGAGAGATAAATTTTGATTCTATGAAAAATGGTGAAAAGAAAAG-TTTTCTT
771 TGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGAAAA-AAAAGCTTTTCTT
** * * * * *
1969768 GTAACACCAAAGCATTAATGTCATGTATCCTAATGAAGGGAATGTGTTCTCGATTCCTAATCTTG
835 GCGAGACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTCTTGGTTCCCAATCTTG
* * * * * *
1969833 AAAAGAATGAAGACTGTTACGAGAATCGATGCTTGTCATATTTAAGGCATG
900 AAAAGAAAGGAGACTGTTGCGAGAATCGATGCTTGTCTTATTTAAGGGATA
* * * * * *
1969884 AATTTTCATTATAAGGAAAATAAGGCAAAGAAAAGATTTCCGT-CTAAAAAAAAATTATCAATAT
1 AATTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGC-AAAAGAAAATCATCAATAT
* * * *
1969948 CATTTATCCTAATGAGGAGAATGTGTTTATTGTGCCTAATCACAAAATGAATGAAAATTAATACT
65 CATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAAGGAATGAAGATTATTACT
* * * * ** * * *
1970013 AGAATCCATGTTTGACTCATTTGAGGCACCAACTTACCCTTTACAAAAATTGGTGGGAAGTATGC
130 AGAATCCATATTTGTCTCATTTGAGGCACGAACATAGACTTTACAAAAATTGGTGAGAAGAAAGC
* * * * * * * * *
1970078 CTTTCTAGCGAAACCAAAGCGTCAATATCGTCTATCC-AATCGAGAAGACTACGTTTGTGGTGCC
195 CTTTCTTGCAAAACCAAAGCATCAATATCCTGTATCCTTAT-GAGAAAACTAAGTTTATGGTGCC
* * * * *
1970142 TAATCTTAAAAAGAGTGAGG-ATTAGTATGACTATTCACGTTTGTCTTATTTAAGAGAACAAACT
259 TAATCCTGAAAAGAATG-GGCATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAG-ACAAACT
* * * * *
1970206 TTGATTTTATAAAAAATGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAACCATCAATGTCATGT
322 TTGATTCTATCAAAAACGGTGAAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGT
* * * * * * *
1970271 ATCCTAATGAA-AGGATTGTGTTCTTGGTTCCCAATCTTAAAAAGAATA-GTGACTATTACAAGA
387 ATCCTAATGAAGA-GAATGTGTTCTTGGTTCCCAATCCTGAAAAGAA-AGGAGACTGTTGCGAGA
* *
1970334 ATCGATGCTT-CTCATATTTAAGAGATGAATTTTGATTTTAAGGAAAATA-GG-AAA-AAAA-AT
450 ATCGATGCTTGC-CTTATTTAAGGGATGAATTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGAT
* ** *
1970394 TTCAATTAAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGTCTA
514 TTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTA
* * * *
1970459 ATCACAAAATGAATAAAG-T--TCACTAGAATCCT-TGTTTGTCTCATTTAAGGCATGAACTTAG
579 ATCACAAAATGAATGAAGATCATTACTAGAAT-CTATGTTTGTCTCATTTGAGGCACGAACTTAG
* * ** * * * * *** *
1970520 ATTTTACAAAAATTGGTGGGAAGAAAGCCTTTATTGCAAAACCAAACCGTCAATATTTTGCATCC
643 ACTTTATAAAAATTGGTAAGAAGAAAGCCTTTCTTGCGAAACCAAAGCATCAATATCACGTATCC
* * * * *
1970585 ATATGAGAAGACTAAGTTTATGGTGCCTAATCCTGAAAAGAATTAGGTTTAGTATGACTAGTCAT
708 TTATGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAA-TGGGATTAGTATGACTATTCAT
* * *
1970650 GTTTGTCTTATTAAAGAGATAAACTTTGATTCTATCAAAAACGGTTGAAAGAAAAGCTTTTCTTG
772 GTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGG-TGAAAAAAAAGCTTTTCTTG
* * * *
1970715 CG-GCACCAAAG---C-ATGT-ATG----CTGACGAAGGGAATGTGTTTTTAGTTCCCAATCTTG
836 CGAG-ACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTCTTGGTTCCCAATCTTG
* * ** * * *
1970770 AAAAGAATGGAGTCTGTTATGAGAATCGATGCTTGCCATATTTAAGGGATG
900 AAAAGAAAGGAGACTGTTGCGAGAATCGATGCTTGTCTTATTTAAGGGATA
* * * *
1970821 AATTTTGATTTTAAGGAAAATAGAGCAAAGAAAAGATTTTCATACAAAACAAAATCATCAATATC
1 AATTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATC
* * * * * * **
1970886 ATTTATCCTAATGAGGACAGTGTGTTTATAATGCCTTATTACAAAATGTTTGAAGATTATTACTA
66 ATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAAGGAATGAAGATTATTACTA
* * * * *
1970951 GAATCCATGTTTGTCTCTTTTGAAGCACGAACTTAGACTTTGCAAAAATTGGT-AGGAAGAAAGC
131 GAATCCATATTTGTCTCATTTGAGGCACGAACATAGACTTTACAAAAATTGGTGA-GAAGAAAGC
* * * * * * ** * *
1971015 CTTTTTTAG-GAAACGAAAGCATCAATATCATCTATCCTAACAAGAAGACTATGTTTATGGTGCC
195 CTTTCTT-GCAAAACCAAAGCATCAATATCCTGTATCCTTATGAGAAAACTAAGTTTATGGTGCC
* * * *
1971079 T-ATTCTAGAAAAGAATGGGGATTAGTTTGACTATTCATGTTTGTCTTATTTAAGAGAGCAAACT
259 TAATCCT-GAAAAGAATGGGCATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGA-CAAACT
* * *
1971143 TTGATTCTATC-AAAACGGTGGAAA-AAAAGCTTTTCTTGTGACACCAAAGCATCAATGTTATGT
322 TTGATTCTATCAAAAACGGTGAAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGT
* * * * * * **
1971206 A-CGCTAAAGAAGGGAATGTGTTATTGGTTCCCAATCTTGAAAAGAATGGAGACTATTATGAGAA
387 ATC-CTAATGAAGAGAATGTGTTCTTGGTTCCCAATCCTGAAAAGAAAGGAGACTGTTGCGAGAA
* * * * * * *
1971270 TCGATGCTAGTCATATTTAAGGGGTGAATTTTGATTTTAAGGAAAAGAGGGCAAAAAAAATATTT
451 TCGATGCTTGCCTTATTTAAGGGATGAATTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTT
* * * * *
1971335 CCATCCAAAAAAAAAAATTCATGAATATCATTTACCCTAAAGAGGAGAATGTGTTTATAGTGCCT
516 CCATGC--AAAAGAAAA-TCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCT
** * * ** *
1971400 AATTTCAAAATGAATGAAGATCAATACTAGAATCCATGTTTAACTCATTTGAGGCAC-AAATGTA
578 AATCACAAAATGAATGAAGATCATTACTAGAATCTATGTTTGTCTCATTTGAGGCACGAACT-TA
** * * ** * * * *
1971464 CCCTTTATAAAAATTAGTGAGATTAAAGCCTTTTTTGAGAAACCAAAACATCAATATCGTC-TAT
642 GACTTTATAAAAATTGGTAAGAAGAAAGCCTTTCTTGCGAAACCAAAGCATCAATATC-ACGTAT
* * * * * *
1971528 CCTCATGAGAAGACTACGTTTATGGTGCTTATTCCTTAAAAGAATGGGGATTAGTATAACTATTC
706 CCTTATGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAAT-GGGATTAGTATGACTATTC
* *
1971593 ATGTTTGTCTTATTTAAGAGAGCAAACTTTGATTTTATCAAAAACGGTGGAAAGAAAAGCTTTTC
770 ATGTTTGTCTTATTTAAGAGA-CAAACTTTGATTCTATCAAAAACGGT-GAAAAAAAAGCTTTTC
* * * * *
1971658 TTGCGACACCAAAGCATCAATTTCATGTATACAAATGAAGGGAATATGTTCTTGGTTCCCAATCT
833 TTGCGAGACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTCTTGGTTCCCAATCT
* * ** * * *
1971723 TAAAAAGAATGGAGACTGTTATGAGAATCGATACTTGTCATATTTAAGGGATG
898 TGAAAAGAAAGGAGACTGTTGCGAGAATCGATGCTTGTCTTATTTAAGGGATA
* * ** **
1971776 AATTTTAATTTTAAGAAAAATAGGGCAAAGAAAAGATTTGAATTAAAAAGAAAATCATCAATATC
1 AATTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATC
* * * * * *
1971841 ATTTATCCTAATTAGGAGAATGTGTTTATAGTGCCTAATCAAAAAATGACT-AA-AGT-TCACTA
66 ATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAAGGAATGAAGATTATTACTA
* * * * * * * *
1971903 CAATCCTTGTTTGTCTTATTTGAGGCATGAACTTAGACTTTACAAAAATTGGGGGGGAAGAAAGC
131 GAATCCATATTTGTCTCATTTGAGGCACGAACATAGACTTTACAAAAATT-GGTGAGAAGAAAGC
* * * * * ** *
1971968 CTTTTTTGTAAAAGCAAAGCGTCAATAT--TTTATACCTTATGAGAGGACTAAGTTTATGGCGCC
195 CTTTCTTGCAAAACCAAAGCATCAATATCCTGTAT-CCTTATGAGAAAACTAAGTTTATGGTGCC
* * * *
1972031 TAATCCTGAAAA-AAGTGGAG-ATTAATATGACTATTCATGTTTGTCTTATTAAAGAAACAAACT
259 TAATCCTGAAAAGAA-TGG-GCATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACT
* *
1972094 TTGATTCTATCAAAAACGGTTG-AAAGAAAAGCATTTCTTGCGACACCAAAGCATCTATGTCATG
322 TTGATTCTATCAAAAACGG-TGAAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATG
* * * * *
1972158 TATCCTGACGAA-AGGAATGTGTTCTTGGTTCCCAATCTTGAAAA-AAATGGAGACTATTACGAG
386 TATCCTAATGAAGA-GAATGTGTTCTTGGTTCCCAATCCTGAAAAGAAA-GGAGACTGTTGCGAG
* *
1972221 AATCGATGCTTGTCATATTTAAGGGATGAATTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGAT
449 AATCGATGCTTGCCTTATTTAAGGGATGAATTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGAT
* * * * *
1972286 TTTCATACAAAA-AAAATCATCAATATCATTTATCCAAATGAGGAGAATGTGTTTATAGTGCTTT
514 TTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTA
* * * * * *
1972350 ATCACAAAATGAATGATGATCTTTACTAGAATCCATGTTTGTCTCCTTTGAGGCATGAACATAGA
579 ATCACAAAATGAATGAAGATCATTACTAGAATCTATGTTTGTCTCATTTGAGGCACGAACTTAGA
* * * * * * * *
1972415 GTTTACAAAAATTGGCTAA-AGGAAAGCTTTTTTTGCAAAACCAAAACATCAATATCGTC-TATC
644 CTTTATAAAAATTGG-TAAGAAGAAAGCCTTTCTTGCGAAACCAAAGCATCAATATC-ACGTATC
* * * ** *
1972478 CTAATGAGAAAACTATGGTTATGGTGCCTAAAGC-GAAAAGGAATGGGGATTAGTGTGACTATTC
707 CTTATGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAA-GAAT-GGGATTAGTATGACTATTC
* *
1972542 ATGTTTGTCCTATTTAAGAGAGCAAACTTTGATTCTATCAAAAAC-GTGGAAAGAAAAGCTTTTC
770 ATGTTTGTCTTATTTAAGAGA-CAAACTTTGATTCTATCAAAAACGGT-GAAAAAAAAGCTTTTC
* ** * * *
1972606 TTGGGATCCCAAAGCATTAATGTCATATATCCTAATGAAGGGAATGTGTTCTTGGTTCCAAATCT
833 TTGCGAGACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTCTTGGTTCCCAATCT
* * ** * * *
1972671 TGTAAAGAATGGAGAC-GATTATGGGAATCGATGCTTGTCATATTTATA-GGATG
898 TGAAAAGAAAGGAGACTG-TTGCGAGAATCGATGCTTGTCTTATTTA-AGGGATA
* *
1972724 AATTTTGATTTTAAGGAAAATA-GG-AAA-AAAACAATTTCCGTGCAAAA-AAAATCATCAATAT
1 AATTTTGATTTTAAGGAAAATAGGGCAAAGAAAA-GATTTCCATGCAAAAGAAAATCATCAATAT
1972785 CATTTATCCTAATGA
65 CATTTATCCTAATGA
1972800 AGGGATCATT
Statistics
Matches: 17732, Mismatches: 3286, Indels: 1944
0.77 0.14 0.08
Matches are distributed among these distances:
919 1 0.00
920 4 0.00
921 3 0.00
922 4 0.00
923 16 0.00
924 14 0.00
925 5 0.00
926 5 0.00
927 1 0.00
928 5 0.00
929 7 0.00
930 2 0.00
931 7 0.00
932 7 0.00
933 285 0.02
934 439 0.02
935 389 0.02
936 268 0.02
937 690 0.04
938 160 0.01
939 31 0.00
940 13 0.00
941 134 0.01
942 124 0.01
943 22 0.00
944 208 0.01
945 971 0.05
946 995 0.06
947 104 0.01
948 1035 0.06
949 1296 0.07
950 2199 0.12
951 3051 0.17
952 1785 0.10
953 1192 0.07
954 26 0.00
955 185 0.01
956 11 0.00
957 17 0.00
958 3 0.00
959 10 0.00
960 11 0.00
961 6 0.00
962 5 0.00
963 12 0.00
964 7 0.00
965 9 0.00
966 7 0.00
967 11 0.00
968 4 0.00
969 8 0.00
970 7 0.00
971 30 0.00
972 64 0.00
973 149 0.01
974 416 0.02
975 82 0.00
976 80 0.00
977 15 0.00
978 4 0.00
979 16 0.00
980 154 0.01
981 195 0.01
982 14 0.00
983 17 0.00
984 40 0.00
985 89 0.01
986 25 0.00
987 11 0.00
988 4 0.00
989 10 0.00
990 5 0.00
991 2 0.00
992 8 0.00
993 11 0.00
994 6 0.00
995 12 0.00
996 5 0.00
997 6 0.00
998 7 0.00
999 15 0.00
1000 70 0.00
1001 83 0.00
1002 5 0.00
1003 5 0.00
1004 9 0.00
1005 2 0.00
1006 6 0.00
1009 1 0.00
1010 15 0.00
1011 5 0.00
1012 8 0.00
1013 9 0.00
1014 30 0.00
1015 90 0.01
1016 6 0.00
1017 13 0.00
1018 3 0.00
1019 1 0.00
1020 6 0.00
1021 3 0.00
1022 3 0.00
1024 5 0.00
1025 1 0.00
1026 7 0.00
1027 5 0.00
1028 10 0.00
1029 16 0.00
1030 4 0.00
1031 3 0.00
1032 4 0.00
1033 1 0.00
ACGTcount: A:0.36, C:0.14, G:0.18, T:0.31
Consensus pattern (950 bp):
AATTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATC
ATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAAGGAATGAAGATTATTACTA
GAATCCATATTTGTCTCATTTGAGGCACGAACATAGACTTTACAAAAATTGGTGAGAAGAAAGCC
TTTCTTGCAAAACCAAAGCATCAATATCCTGTATCCTTATGAGAAAACTAAGTTTATGGTGCCTA
ATCCTGAAAAGAATGGGCATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGA
TTCTATCAAAAACGGTGAAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCC
TAATGAAGAGAATGTGTTCTTGGTTCCCAATCCTGAAAAGAAAGGAGACTGTTGCGAGAATCGAT
GCTTGCCTTATTTAAGGGATGAATTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATG
CAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAA
AATGAATGAAGATCATTACTAGAATCTATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTATA
AAAATTGGTAAGAAGAAAGCCTTTCTTGCGAAACCAAAGCATCAATATCACGTATCCTTATGAGA
AGACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGATTAGTATGACTATTCATGTTTGTCTT
ATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGAAAAAAAAGCTTTTCTTGCGAGACCAAA
GCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTCTTGGTTCCCAATCTTGAAAAGAAAGGA
GACTGTTGCGAGAATCGATGCTTGTCTTATTTAAGGGATA
Found at i:1952863 original size:159 final size:157
Alignment explanation
Indices: 1950781--1958526 Score: 588
Period size: 159 Copynumber: 49.1 Consensus size: 157
1950771 GAGACAGTTG
* *** * * * *
1950781 CTAGAATCGATGCTTGTGATATTTAAGGGATAAATTTTTATTTTAAGAAAAATAGGGA-AAAGAA
1 CTAGAATCAATGCTTGCCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATA-GGATAAAGAA
* ** * * *
1950845 AAGATTTCCATGTGAAAGAAAATCATCAATATCATTTATCCTAATGAGGAA-AATATGTTTATAG
65 AAGATTTCCTTGCAAAACAAAAGCATCAATATCATTTATCCTAATGA-GAAGAATGTGTTTA-AG
* * *
1950909 TGCCTAATCGCAAAATGAATGAATATTATTA
128 TGCCTAATCACAAAA-GAATGAAGATCATTA
* ** * * * * * * * * * *
1950940 CTAGAATCCATTTTTGTCTCATTTTAGGCACGAAGTTAGACTTTACA--AAAAT-TGAGTGGAAG
1 CTAGAATCAATGCTTGCCTTATTTAAGGGATGAACTTTGATTTTA-AGGAAAATAGGA-T-AAAG
* * * * * *
1951002 -AAAGCCTTT-CTTGCAAAA-ATAATGCATCAATATCATGTATCCTTATGAGAAGACTATGTTTA
63 AAAAG-ATTTCCTTGCAAAACA-AAAGCATCAATATCATTTATCCTAATGAGAAGAATGTGTTTA
* * * *
1951064 TGGTTCCTAATC-CTGAAAAGAAT-AAGGATTAGTA
126 -AGTGCCTAATCAC--AAAAGAATGAA-GATCATTA
* * * * * * * *** *
1951098 -TGAGTATTAATGTTTGTCTTATTTAAGAGATAAATTTTGATTTTATCCAAAA-CGG-TGGAAAG
1 CT-AGAATCAATGCTTGCCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGAT--AAAG
* * * * * * * *
1951160 AAAAGCTTTTCC-TGCGACACCAAATCATCAATGTCATGTATCCTAATGA-AGGGAATGTGTTCT
63 AAAAG-ATTTCCTTGCAAAACAAAAGCATCAATATCATTTATCCTAATGAGA-AGAATGTGTT-T
** * * *
1951223 TGGTTACC-AATC-CTGAAAAGAATGGAGA-CTATTGG
125 AAG-TGCCTAATCAC--AAAAGAATGAAGATC-ATT-A
* * * * * *
1951258 CGAGAATCGATGCTTGTCTTTTTTAAGGGAT-AACTTTGATTTTAAGAAAAATATGG-CAAAGAA
1 CTAGAATCAATGCTTGCCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATA-GGATAAAGAA
* * * *
1951321 AAGATTTCCATGCAAAACAAAATCATTAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGT
65 AAGATTTCCTTGCAAAACAAAAGCATCAATATCATTTATCCTAATGAGAAGAATGTGTTTA-AGT
1951386 GCCTAATCACAAAAGGAATGAAGATC-TTA
129 GCCTAATCACAAAA-GAATGAAGATCATTA
* * ** * * ** * ** * * * *
1951415 GTAGAATCTATATTTGTCTCATTCGAGGTACAAACATAGACTTTACA--AAAATTGG-T-AAGAA
1 CTAGAATCAATGCTTGCCTTATTTAAGGGATGAACTTTGATTTTA-AGGAAAATAGGATAAAG-A
* * * * * **
1951476 GAAAGCTTTTCTGGCAAAACCAAAGCATCAATATCCA-GTATCCTTTTGAGAA-AACTAAGT-TT
64 -AAAGATTTCCTTGCAAAACAAAAGCATCAATAT-CATTTATCCTAATGAGAAGAA-T--GTGTT
** * * *
1951538 TTGGTGCCTAATCTTGC-AACGAATG--G-GCATTA
124 TAAGTGCCTAATC--ACAAAAGAATGAAGATCATTA
* * ** * * ** ** ** *
1951570 GTATGAGTATTC-ATGTTTGTTTTATTTGAGAGACAAACTTTGA-TTCCATCAAAA-ACGGTTGA
1 CTA-GA--A-TCAATGCTTGCCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATA-GGAT-A
* * * * ** * *
1951632 AA-AAATAGCTTTTCTTGCGAGACCGAAGCATCAATGTCATCTATCCTAAT-A-AAGGGAATGTG
60 AAGAAA-AGATTTCCTTGCAAAACAAAAGCATCAATATCATTTATCCTAATGAGAA--GAATGTG
** * * * * * * *
1951694 TTTTTGGTTCCCAATCTAGAAAAAAAAGGAGA-CTGTTA
122 -TTTAAGTGCCTAATC-ACAAAAGAATGAAGATC-ATTA
* * **
1951732 CGAGAATCAATGCTTGCCTTATTTAAGGGATGAATTTTGATTTTAAGGAAAATAGGGCAAAGAAA
1 CTAGAATCAATGCTTGCCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGATAAAGAAA
* * * * * *
1951797 AGATTTCCATGCAAAAGAAAATCATCGATATCATTTATCCTAATAAGGAGAATGTGTTTATAGTG
66 AGATTTCCTTGCAAAACAAAAGCATCAATATCATTTATCCTAATGAGAAGAATGTGTTTA-AGTG
*
1951862 CCTAATCAAAAAAGGAATGAAGATC-TTA
130 CCTAATCACAAAA-GAATGAAGATCATTA
* ** * ** ** * * * * * *
1951890 CTAGAATCTATAATTGTCTCGTTCGAGGCACGAACATAGACTTTACA--AAAATTGG-TGAGAAG
1 CTAGAATCAATGCTTGCCTTATTTAAGGGATGAACTTTGATTTTA-AGGAAAATAGGAT-A-AAG
* * * * * *
1951952 -AAAGCTTTTCC-AGCAAAACCAAAGCATCAATATCCTGTATCCTTATGAGAA-AACTAAGT-TT
63 AAAAG-ATTTCCTTGCAAAACAAAAGCATCAATATCATTTATCCTAATGAGAAGAA-T--GTGTT
** * * * *
1952013 TTGGTGCCTAATC-CTGAAACGGATG-GGTATTATTA
124 TAAGTGCCTAATCAC--AAAAGAATGAAG-ATCATTA
* * ** * * ** ** ** *
1952048 -TGAGTATTC-ATGTTTGTTTTGTTTAAGAGACAAACTTTGA-TTCCATCAAAA-ACGGTTGAAA
1 CT-AG-AATCAATGCTTGCCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATA-GGAT--AA
* * * * * * * *
1952109 AAAAAAGCTTTTCC-TGCGACACCAAAGCATCAATGTCATGTATCCTAATGA-AGGGAATGTG-T
61 AGAAAAG-ATTTCCTTGCAAAACAAAAGCATCAATATCATTTATCCTAATGAGA-AGAATGTGTT
* ** * *
1952171 TATTGCTTGCC-AATCTTGAAAAGAATGAAGA-CTGTTGG
124 TA-AG--TGCCTAATC-ACAAAAGAATGAAGATC-ATT-A
* * * * **
1952209 CGAGAATCGATGCTTGTCTTATTTAAGGGAT-AACATTGATTTTAAGGAAAAT-GTGGCAAAGAA
1 CTAGAATCAATGCTTGCCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAG-GATAAAGAA
* ** * * * *
1952272 AAGATTTCCATGCAAATGAAAATCATCAATATAATTTATCCTAATAAGGAGAATGT-TTTATAGT
65 AAGATTTCCTTGCAAAACAAAAGCATCAATATCATTTATCCTAATGAGAAGAATGTGTTTA-AGT
* *
1952336 GCCAAATGACGAAAAGAATGAAGATC-TTA
129 GCCTAATCAC-AAAAGAATGAAGATCATTA
* ** * * * ** * * * * * * *
1952365 CTAGAATCTATATTTGTCTCATTTGAGACACGAACATAGACTTCACA--AAAATTGG-T-GAGAC
1 CTAGAATCAATGCTTGCCTTATTTAAGGGATGAACTTTGATTTTA-AGGAAAATAGGATAAAGA-
* * * * * * *
1952426 GAAAGCTTTTAC-GGCAAAACCAAAGCATCAATATCCTGTATCCTTATGAGAA-AACTAAGT-TT
64 -AAAG-ATTTCCTTGCAAAACAAAAGCATCAATATCATTTATCCTAATGAGAAGAA-T--GTGTT
** *
1952488 TTGGTGCCTAATC-CTAAAATGAATG--G-GCATTA
124 TAAGTGCCTAATCAC-AAAA-GAATGAAGATCATTA
* * * * ** * * ** *
1952520 CTATGAATATTAATGTTTG-TTCTATTTAAGAGACAAAATTTGATTCT-ATCAAAA-ACGGTTGA
1 CTA-G-A-ATCAATGCTTGCCT-TATTTAAGGGATGAACTTTGATTTTAAGGAAAATA-GGAT-A
* * * * * * * * * **
1952582 AAAAAAAGCTTTCCTTGCGACACCAAAGCATCAATGTCATGTACCCTAACGAGGGGAATGTGTTT
60 AAGAAAAGATTTCCTTGCAAAACAAAAGCATCAATATCATTTATCCTAATGAGAAGAATGTG-TT
** * * * * * *
1952647 TTGGTTCCAAATCTAGAAAAGAAAGGAGA-CTGTTA
124 TAAGTGCCTAATC-ACAAAAGAATGAAGATC-ATTA
* *
1952682 CGAGAATCAATGCTTGCCTTATTTAAGGGATGAATTTTGATTTTAAGGAAAATAGGATAAAGAAA
1 CTAGAATCAATGCTTGCCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGATAAAGAAA
* * * *
1952747 AGATTTCCTTGCAAAAGAAAATCATCAATATCATTTTTCCTAATGAGGAGAATGTGTTTACAGTG
66 AGATTTCCTTGCAAAACAAAAGCATCAATATCATTTATCCTAATGAGAAGAATGTGTTTA-AGTG
1952812 CCTAATCACAAAATGAATGAAGATCATTA
130 CCTAATCACAAAA-GAATGAAGATCATTA
* * * * * * * * *
1952841 CTAGAATCATTGTTTGTCTTATTTGAGGCACGAACTTAGACTTTATA--AAAATTGG-TCAAA-A
1 CTAGAATCAATGCTTGCCTTATTTAAGGGATGAACTTTGATTTTA-AGGAAAATAGGAT-AAAGA
* * * * * * * *
1952902 GAAAGCCTTT-CTTGCGAAACCAAAGCATCAACATCATCTATCCTAATGAGAAGACTATGTTTAT
64 -AAAG-ATTTCCTTGCAAAACAAAAGCATCAATATCATTTATCCTAATGAGAAGAATGTGTTTAA
** *
1952966 GTTGCCTAATC-CTAAAAAGAATGGGGATTAGTATGA
127 G-TGCCTAATCAC--AAAAGAATGAAGATCA-T-T-A
* * * * * ** * *
1953002 CT--ATTC-ATGTTTGTCATATTT-AGGAGAT-AAGCTTTGATTCTATCGAAAACGATGA-AAAG
1 CTAGAATCAATGCTTGCCTTATTTAAGG-GATGAA-CTTTGATTTTAAGGAAAA-TAGGATAAAG
* * ** * ** * **
1953061 AAAAGCTTTTCTTGTGATACCCAAGCATCAATGTCACGTATCCTAATGA-AGAGAATGTGTTCT-
63 AAAAGATTTCCTTGCAAAACAAAAGCATCAATATCATTTATCCTAATGAGA-AGAATGTGTT-TA
* * * * *
1953124 TGAT-TCTCAATCTAGAAAAGAA--AAGAGACTGTTA
126 AG-TGCCT-AATC-ACAAAAGAATGAAGA-TC-ATTA
* * * *
1953158 -TGAGAATCAATGCTTGCCTTATTTAAGGGTTGAATTTTGATTTTAAGAAAAATAGGGTAAAGAA
1 CT-AGAATCAATGCTTGCCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGATAAAGAA
* * * * *
1953222 AAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTCATAAGAAGAATGTGTTTATAGT
65 AAGATTTCCTTGCAAAACAAAAGCATCAATATCATTTATCCTAATGAGAAGAATGTGTTTA-AGT
*
1953287 GCCTAATCACAAAAGGAATGAAGAT-TTTA
129 GCCTAATCACAAAA-GAATGAAGATCATTA
* ** * ** ** * * * * * * *
1953316 CTAGAATCTATATTTGTCTCGTTCGAGGCACGAACATAGACTTTACA-AAAAATGGTGA-AAAG-
1 CTAGAATCAATGCTTGCCTTATTTAAGGGATGAACTTTGATTTTA-AGGAAAATAG-GATAAAGA
* ** * * * * * *
1953378 AAAGCTTTTATGGCAAAACCAAAGCATCAATATCCTGTATCCTTATGAGAA-AACTAAGT-TTTT
64 AAAGATTTCCTTGCAAAACAAAAGCATCAATATCATTTATCCTAATGAGAAGAA-T--GTGTTTA
* ** * * *
1953441 GGTGCCTAATGCTGAAATGGATG--G-GCATTA
126 AGTGCCTAAT-CACAAAAGAATGAAGATCATTA
* * ** * ** * ** *
1953471 GTATGAGTATTC-ATGTTTGTTTTATTTAAGAGACAAACTTTGATTCT-ATCAAAA-ACGGTTGA
1 CTA-GA--A-TCAATGCTTGCCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATA-GGAT-A
*** ** * * * **
1953533 AA-AAATTTTTTCC-TGCAGCACCAAAGCATCAATGTCATGTATCCTAATGAGGGGAATGTG-TT
60 AAGAAAAGATTTCCTTGCAAAACAAAAGCATCAATATCATTTATCCTAATGAGAAGAATGTGTTT
* ** * *
1953595 ATTGCTTGCC-AATCTTGAAAAGAATGGAGA-CTGTTGGA
125 A-AG--TGCCTAATC-ACAAAAGAATGAAGATC-ATT--A
* * * * * *
1953633 -GAGAATCGATGCTTGTCTTATTTGAGGGAT-AACATTGATTTTAAGGAAAATATGG-CAAAGAA
1 CTAGAATCAATGCTTGCCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATA-GGATAAAGAA
* * * * *
1953695 AAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATTAGGAGAATGTGTTTATAGT
65 AAGATTTCCTTGCAAAACAAAAGCATCAATATCATTTATCCTAATGAGAAGAATGTGTTTA-AGT
* * * *
1953760 TCCTAATCACGAAAGGACTAAAGATC-TTA
129 GCCTAATCAC-AAAAGAATGAAGATCATTA
* ** * * * ** ** * * * * * * *
1953789 CTAGAATCTATATTTGTCTCATTTGAGACACAAACATAGACTTT-ACG--AATTGG-TGAGAGGA
1 CTAGAATCAATGCTTGCCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGAT-AAAGAA
* ** * * * * * **
1953850 AAGCTTTTATGGCAAAACCAAAGCATCAATATCCTGTATCCTTATGAGAA-AACTAAGT-TTTTG
65 AAGATTTCCTTGCAAAACAAAAGCATCAATATCATTTATCCTAATGAGAAGAA-T--GTGTTTAA
*** * *
1953913 GTGCCTAATTTTGAAACGAATG--G-GCATTA
127 GTGCCTAA-TCACAAAAGAATGAAGATCATTA
* * *** * * ** * * ** *
1953942 GTATGAGTATTC-ATGTTTTTTTTATTTACGAGACAAAATTTGATTCT-ACCAAAA-ACGGTTGA
1 CTA-GA--A-TCAATGCTTGCCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATA-GGAT-A
* * * * * * * * * * * *
1954004 AAAAAAAGCTTTTCTTACGACACCAAAGCATCAATGTCATGTACCCTAATGA-AGGGAATCTGTT
60 AAGAAAAGATTTCCTTGCAAAACAAAAGCATCAATATCATTTATCCTAATGAGA-AGAATGTGTT
** * * * * *
1954068 TTTG-GTTCTCAATCTAGAAAAGAAAGGAGA-CTGTTA
124 TAAGTG-CCT-AATC-ACAAAAGAATGAAGATC-ATTA
* **
1954104 -GAGAATCAATGCCTT-CCTTATTTAAGGGATGAA-TTTCGATTTTAAGGAAAATAGGGCAAAGA
1 CTAGAATCAATG-CTTGCCTTATTTAAGGGATGAACTTT-GATTTTAAGGAAAATAGGATAAAGA
* * * * * * *
1954166 AAAGATTTTCGTGCAAAAGAAAATCATCAATATCTTTTATCCTAACGAGGAGAATGTGTTTACAG
64 AAAGATTTCCTTGCAAAACAAAAGCATCAATATCATTTATCCTAATGAGAAGAATGTGTTTA-AG
1954231 TGCCTAATCACAAAATGAATGAAGATCATTA
128 TGCCTAATCACAAAA-GAATGAAGATCATTA
** * * * * * * * *
1954262 CTAGAATCCTTGTTTGACTTATTTGAGGCACGAACTTAGACTTTATA--AAAATTGG-TCAGAAG
1 CTAGAATCAATGCTTGCCTTATTTAAGGGATGAACTTTGATTTTA-AGGAAAATAGGAT-A-AAG
* * * * * * * * *
1954324 -AAAGCCTTT-TTTGCGAAACCAAAGCATCAACATCATCTATCCTAATGAGAAGACTATGTTTAT
63 AAAAG-ATTTCCTTGCAAAACAAAAGCATCAATATCATTTATCCTAATGAGAAGAATGTGTTTAA
** ** *
1954387 GTTGCCTAATCTTGAAAAGAATGGGGATTAGCTTGA
127 G-TGCCTAATC-ACAAAAGAATGAAGATCA--TT-A
* * ** * * * * * ** *
1954423 CT--ATTC-ATGTTTATCATATTTAAGAGATAAACCTTGATTCT-ATCAAAA-ACGATGAAAAGA
1 CTAGAATCAATGCTTGCCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGAT--AAAGA
* * **** ** * * * **
1954483 AAAGCTTTTCTTGTGGCACCCAAGCATCAATGTCATGTATCCTAATGA-AGGGAATGTGTTCTTG
64 AAAGATTTCCTTGCAAAACAAAAGCATCAATATCATTTATCCTAATGAGA-AGAATGTGTT-TAA
* * * * *
1954547 GTTCCTAATCTCGAAAAGAAAGGAGA-CTACTA
127 GTGCCTAATCAC-AAAAGAATGAAGATC-ATTA
* * * * **
1954579 CGAGAATCAATGCTTGCCTTATTTAAGGGATAAATTTTGATTTTAAGGAAAATGGGGCAAAGAAA
1 CTAGAATCAATGCTTGCCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGATAAAGAAA
* * * * *
1954644 AGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATAAGGAGAATGAT-TTTATAGT
66 AGATTTCCTTGCAAAACAAAAGCATCAATATCATTTATCCTAATGAGAAGAATG-TGTTTA-AGT
*
1954708 GCCTAAACACAAAAGGAATGAAGATC-TTA
129 GCCTAATCACAAAA-GAATGAAGATCATTA
* ** * * ** * * * * * * *
1954737 CTAGAATCTATATTTGTCTCATTCGAGGCACGAACATAGACTTTACA--AAAGTTGG-TGAGAAG
1 CTAGAATCAATGCTTGCCTTATTTAAGGGATGAACTTTGATTTTA-AGGAAAATAGGAT-A-AAG
* ** * * * * * * *
1954799 -AAAGCTTTTATGGCAAAACCAAAGCATCAATATCCTGTATCCTTAA-GAAAACTAA-GT-TTTT
63 AAAAGATTTCCTTGCAAAACAAAAGCATCAATATCATTTATCC-TAATGAGAA-GAATGTGTTTA
* ** *
1954860 GGTGCCTAATCTTGAAACA-AATG--G-GCATTA
126 AGTGCCTAATC-ACAAA-AGAATGAAGATCATTA
* * ** * ** * *** *
1954890 GTCTGAGTATTC-ATGTTTGTTTTATTTAAGAGACAAACTTTGATTCTATCAAAAATTGTTGA-A
1 --CT-AG-AATCAATGCTTGCCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAG--GATA
* * * * ** ** * *
1954953 AA-AAAAGCTTTTCTTGCGACACCTAAGCATCAATGCCATGTATCCTAATGAAAAGAATGTGTTT
60 AAGAAAAGATTTCCTTGCAAAACAAAAGCATCAATATCATTTATCCTAATGAGAAGAATGTG-TT
** * * * * *
1955017 TTGGTTCCCAATCTA-AAAAGAAAGGAGA-CTGTTA
124 TAAGTGCCTAATC-ACAAAAGAATGAAGATC-ATTA
* * * *
1955051 CGAGAATCAATGCTTGCCTTATTTAAGGGAGGAATTTTGATTTTAAGGAAAATAAGG-CAAAGAA
1 CTAGAATCAATGCTTGCCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAAT-AGGATAAAGAA
* * * * * * *
1955115 AAGATTTTCATTG-AAAAGAAAATCACCGATATCATTTATCCTAACGAGGAGAATGTGTTTATAG
65 AAGA-TTTCCTTGCAAAACAAAAGCATCAATATCATTTATCCTAATGAGAAGAATGTGTTTA-AG
*
1955179 TGCCTAATCACAAAATAAATGAAGATCATTA
128 TGCCTAATCACAAAA-GAATGAAGATCATTA
* * * * * * * * * *
1955210 TTAGAATC-CTAGTTTGTCTTATTTGAGGTACGAACTTAGACTTTATA--AAAATTGG-TCAGAA
1 CTAGAATCAAT-GCTTGCCTTATTTAAGGGATGAACTTTGATTTTA-AGGAAAATAGGAT-A-AA
* * * * ** * *
1955271 G-AAAGCCTTT-CTTGCGAAACCAAAGCATCAACATCACCTATCCTAATGAGAAGACTATGTTTA
62 GAAAAG-ATTTCCTTGCAAAACAAAAGCATCAATATCATTTATCCTAATGAGAAGAATGTGTTTA
** ** * *
1955334 TCTTGCCTAATC-CTAAAAAGAATGGGGATTAATA
126 -AGTGCCTAATCAC--AAAAGAATGAAGATCATTA
* ** ** * * * * * * ** * *
1955368 TTACTATTTATGTTTGTCATATTTAAGAGAT-AGGCTTTGATTCT-ATCAAAA-ATGATGAAG-A
1 CTAGAATCAATGCTTGCCTTATTTAAGGGATGA-ACTTTGATTTTAAGGAAAATAGGATAAAGAA
* * * * * *
1955429 AAG--------GC--AAC-CAAGCATCAATGTCATGTGA-CCTAATGA-ATGGAAAGTGTTCTTA
65 AAGATTTCCTTGCAAAACAAAAGCATCAATATCAT-TTATCCTAATGAGA-AGAATGTGTT-TAA
* * ** * *
1955481 GTTCCCAATCTTGAAAAGAATGGAGA-CAGTTG
127 GTGCCTAATC-ACAAAAGAATGAAGATCA-TTA
* ** * * * * *
1955513 CGAGAAT-ACATG-TTGGTTATATTTAAGAGATAAATTTTGATTATAAGGAAAATA-GAGCAAAG
1 CTAGAATCA-ATGCTTGCCT-TATTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGA-TAAAG
* * * * * *
1955575 AAAAGTTTTCCATCCAAAAAAAAATCATCAATATCATTTATCCT-ATCGAGAAGATTGTGTTTAT
63 AAAAGATTTCCTTGCAAAACAAAAGCATCAATATCATTTATCCTAAT-GAGAAGAATGTGTTTA-
1955639 AGTGCCTAATCA-AAAATTGAATGAAGATCATTA
126 AGTGCCTAATCACAAAA--GAATGAAGATCATTA
* * * * * ** * ** * *
1955672 CTAGAAT-ACGTGTTTGACTCATTTGAGTTACGAACTTACACTTTACA--AAAATTGG-TGAGAA
1 CTAGAATCA-ATGCTTGCCTTATTTAAGGGATGAACTTTGATTTTA-AGGAAAATAGGAT-A-AA
* * * * * * * * *
1955733 -AATAGCCTTT-CTTGCGAAACAAAAGCATCAACATCGTCTATCCTTATGAGAAGACTATG-TTA
62 GAAAAG-ATTTCCTTGCAAAACAAAAGCATCAATATCATTTATCCTAATGAGAAGAATGTGTTTA
* * ** * *
1955795 TGTTGGCTAATC-CTAAAAAGAATGGGGATTAGGATGA
126 AG-TGCCTAATCAC--AAAAGAATGAAGA-T--CATTA
* * * * * * * *** *
1955832 CT--ATTC-ATGTTTGTCATT-TTAAAGAGA-CAAGCTTTGATTCTATTAAAAAT-GGAAAAAAG
1 CTAGAATCAATGCTTG-CCTTATTTAAGGGATGAA-CTTTGATTTTAAGGAAAATAGG-ATAAAG
* * ** * * ** * *
1955891 AAAAGCTTTTCTTGCAGTACCAAAGCGTCAACGTCATGTATCCTAATGAAGAA-AATGTGTTCTC
63 AAAAGATTTCCTTGCAAAACAAAAGCATCAATATCATTTATCCTAATG-AGAAGAATGTGTT-TA
* * ** * * *
1955955 GGCT-CCCAATCTTGAAAAGAAAGGAGA-CAGTTG
126 AG-TGCCTAATC-ACAAAAGAATGAAGATCA-TTA
* * * *** * * * **
1955988 CTGGAATCGATGCTAGTGATATTTGAGGGATGAATTTTTATTTTAAGGAAAATAGGGCAAAGAAA
1 CTAGAATCAATGCTTGCCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGATAAAGAAA
* * * * * * * *
1956053 AGCTTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTATTGAGGAGAATATGTTTATAGTA
66 AGATTTCCTTGCAAAACAAAAGCATCAATATCATTTATCCTAATGAGAAGAATGTGTTTA-AGTG
** * *
1956118 CCTAATCACATAATTAATGAATATCTTTA
130 CCTAATCACA-AAAGAATGAAGATCATTA
* * * * * * * **
1956147 CTAGAATCCATGTTTGTCTTATTTGAGGCACGAACTTTGACTTTATAA--AAATTAAGG-GGAAG
1 CTAGAATCAATGCTTGCCTTATTTAAGGGATGAACTTTGA-TTT-TAAGGAAAAT-AGGATAAAG
* * * * * * * * *
1956209 -AAAGCCTTT-CTTGCGAAACTAATGCATCAATATCATGTATCCTTATGAGAAGACTATGTTTAC
63 AAAAG-ATTTCCTTGCAAAACAAAAGCATCAATATCATTTATCCTAATGAGAAGAATGTGTTTAA
* *
1956272 GATGCCTAATC-CAGGAAAGAAT-AAGGATTAGTA
127 G-TGCCTAATCACA--AAAGAATGAA-GATCATTA
* * * ** * ** * * *** *
1956305 -TGAGTATTAATGTTTATCTTATTTAAGAGACAAATTTTGTTTTTATCCAAAAT-GGTAAAAAGA
1 CT-AGAATCAATGCTTGCCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAGG-ATAAAGA
* * * * * * * * * *
1956368 AAAGTTTTTCTTGTGATAGC-AAAGCATTAATGTCATGTATCCTAATGA-AGGGAATGTGTTCTT
64 AAAGATTTCCTTG-CAAAACAAAAGCATCAATATCATTTATCCTAATGAGA-AGAATGTGTT-TA
* ** ** * *
1956431 GGTTACTAATCTTGAAAAGAAT-AGAGA-CTGTTG
126 AGTGCCTAATC-ACAAAAGAATGA-AGATC-ATTA
* * * *
1956464 GTGAGAATCGATGCTTGTCTTATTTAAGGGAT-AACTTTGATTTTAAGGAAAATATGG-CAAAGA
1 CT-AGAATCAATGCTTGCCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATA-GGATAAAGA
* * * *
1956527 AAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAG
64 AAAGATTTCCTTGCAAAACAAAAGCATCAATATCATTTATCCTAATGAGAAGAATGTGTTTA-AG
* *
1956592 TGCCTAATCACAAAAGGAAAGAAAATC-TTA
128 TGCCTAATCACAAAA-GAATGAAGATCATTA
* ** * * * * * ** * * *
1956622 CTAGAATCTATATTTGTCTCATTTGAGGCACGAAAATGGACTTTACA--AAAATTGG-TGAGAAG
1 CTAGAATCAATGCTTGCCTTATTTAAGGGATGAACTTTGATTTTA-AGGAAAATAGGAT-A-AAG
* * * * * * *
1956684 -AAAGCTTT-TTTAGCAAAACCAAAGCATCAATATCCTGCT-TCTTTATGAGAA-AACTAAGT-T
63 AAAAGATTTCCTT-GCAAAACAAAAGCATCAATATCAT-TTATCCTAATGAGAAGAA-T--GTGT
** * * *
1956744 TTTGGTGCCTAATC-CTGAAACGAATG--G-GCTTTA
123 TTAAGTGCCTAATCAC--AAAAGAATGAAGATCATTA
* * ** * ** * ** *
1956777 GTATGAGTATTC-ATGTTTGTTTTATTTAAGAGACAAACTTTGATTCT-ATCAAAA-ACGATTGA
1 CTA-GA--A-TCAATGCTTGCCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGA-T-A
* * * * ** * *
1956839 AA-AAAAGAGCTTTTCTTGCGATACCAAAGCATCAATGCCATGTATCCTAATGA-AGGGAATGTG
60 AAGAAAAGA--TTTCCTTGCAAAACAAAAGCATCAATATCATTTATCCTAATGAGA-AGAATGTG
** * * * * * **
1956902 TTTTTGGTTCCCAATCTA-GAAAGAAAGGAGATTGTTA
122 -TTTAAGTGCCTAATC-ACAAAAGAATGAAGATCATTA
* * * * **
1956939 -TGAGAATCAATGATTGCCTTATTTAAGGGATGAATTTTGATTTTATGGATAATAGGGCAAAGAA
1 CT-AGAATCAATGCTTGCCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGATAAAGAA
* * * * * *
1957003 AAGATTTTCATGCAAAAGAAAATCATCAATATCATTTATCCTAACGAGGAGAATGTGTTTATAGT
65 AAGATTTCCTTGCAAAACAAAAGCATCAATATCATTTATCCTAATGAGAAGAATGTGTTTA-AGT
1957068 GCCTAATCACAAAATGAATGAAGATCATTA
129 GCCTAATCACAAAA-GAATGAAGATCATTA
** * * * * * * * *
1957098 CTAGAATCCTTGTTTGTCTTATTTGAGGCACGAACTTAGACTTTATA--AAAATTGG-TCAGAAG
1 CTAGAATCAATGCTTGCCTTATTTAAGGGATGAACTTTGATTTTA-AGGAAAATAGGAT-A-AAG
* ** * * ** * *
1957160 -AAAGCCTTT-CTTGTGAAACCAAAGCATCAACATCACCTATCCTAATGAGAAGACTATGTTTAT
63 AAAAG-ATTTCCTTGCAAAACAAAAGCATCAATATCATTTATCCTAATGAGAAGAATGTGTTTA-
** ** *
1957223 CTTGCCTAATC-CTGAAAAGAATGGGGAT--TAA
126 AGTGCCTAATCAC--AAAAGAATGAAGATCATTA
* * * * * * *** * *
1957254 CT--ATTC-ATGTTTG-TTATATTTAAGAGAT-AGCTTTGATTCTATCAAAAATGATGA-AAAAA
1 CTAGAATCAATGCTTGCCT-TATTTAAGGGATGAACTTTGATTTTAAGGAAAAT-AGGATAAAGA
* * ** * * * * *
1957313 AAAGTTTTTCTTGCGGCAAC-CAAGCATCAATGTCATGTATCCTAATGA-AAGGAAAGTGTTCTT
64 AAAGATTTCCTTGC-AAAACAAAAGCATCAATATCATTTATCCTAATGAGAA-GAATGTGTT-TA
* * * ** *
1957376 GGTTCCCAATCTTGAAAAGAATGGAGA-CAGTT-
126 AGTGCCTAATC-ACAAAAGAATGAAGATCA-TTA
* * * * * * * * * **
1957408 GTGAGAATCGATGCTGGTCATATTTAAGAGATAAATTTTGATTATAAGGAAAATAGGGCAAAGAA
1 CT-AGAATCAATGCTTGCCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGATAAAGAA
* * * * * *
1957473 AAGTTTTCCATCCAAAAGAAAATCATCAATATCATTTATCCT-ATCGAGAAGATTGTGTTTATAG
65 AAGATTTCCTTGCAAAACAAAAGCATCAATATCATTTATCCTAAT-GAGAAGAATGTGTTTA-AG
1957537 TGCCTAATCACAAATTA-AATGAAGATCATTA
128 TGCCTAATCACAAA--AGAATGAAGATCATTA
* * * * * * * ** * * *
1957568 CTGGAATCCATGTTTGACTCATGTGAGTTACGAACTTAT-ACTTTACA--AAAATTGG-TGAGAA
1 CTAGAATCAATGCTTGCCTTATTTAAGGGATGAACTT-TGATTTTA-AGGAAAATAGGAT-A-AA
* * * * * * * *
1957629 G-AAAGCCTTT-CTTGCGAAACCAAAGCATCAACATCGTCTATCCTAATGAGAAGACTATGTTTA
62 GAAAAG-ATTTCCTTGCAAAACAAAAGCATCAATATCATTTATCCTAATGAGAAGAATGTGTTTA
* * ** * **
1957692 TGTTGCCTAATCTTA-AAAAGAGTGGGGATTAGGA
126 AG-TGCCTAATC--ACAAAAGAATGAAGATCATTA
* * * ** * *** *
1957726 --AGACTATTC-ATGTTTGTCATT-TTTAAGAGACAAACTTTGATTCTATCAAAAAT-GGTAAAA
1 CTAGA--A-TCAATGCTTG-CCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAGG-ATAA
* * ** * **
1957786 AGAAAAGCTTTTCTTGCAGCACCAAAGCATCAACGTC-TTGTATCCTAATGAAGAA-AATGTGTT
61 AGAAAAGATTTCCTTGCAAAACAAAAGCATCAATATCATT-TATCCTAATG-AGAAGAATGTGTT
* * * ** * ** *
1957849 CTTAGTTCCCAATCTTGAAAAGAAGGGTGAT-AGTTG
124 -TAAGTGCCTAATC-ACAAAAGAATGAAGATCA-TTA
* *** *
1957885 CTAGAATCGATGCTTGTGATATTTAAGGGATGAATTTTTG-TTTTAAGGAAAATAGGATAAAGAA
1 CTAGAATCAATGCTTGCCTTATTTAAGGGATGAA-CTTTGATTTTAAGGAAAATAGGATAAAGAA
* * * * * *
1957949 AAGATTTCCATGCAAAAAAAAATCATCAATATCATTTATCCTAATGAGGAGAATATGTTTATGGT
65 AAGATTTCCTTGCAAAACAAAAGCATCAATATCATTTATCCTAATGAGAAGAATGTGTTTA-AGT
* * *
1958014 ACCTAATCACAAAATTAATGAATATCATTA
129 GCCTAATCACAAAA-GAATGAAGATCATTA
* * * * * * ** * * * *
1958044 CTAGAATCCATGTTTGTCTCATTTGAGGCACAAACTTAGACTTTATAA-AAAAAAAGGGT-AAG-
1 CTAGAATCAATGCTTGCCTTATTTAAGGGATGAACTTTGA-TTT-TAAGGAAAATAGGATAAAGA
* * * * ** * * * *
1958106 AAAGCCTTT-CTTGCGAAACTAATGCATCAATATCACGTATCCTTATGAGAAGACTATGTTTATG
64 AAAG-ATTTCCTTGCAAAACAAAAGCATCAATATCATTTATCCTAATGAGAAGAATGTGTTTA-A
* ** * *
1958170 GTGCTTAATCTTGAAAAGAAT-AAGGATTAGTA
127 GTGCCTAATC-ACAAAAGAATGAA-GATCATTA
* * ** * * * * * * *** *
1958202 -TGAGTATTAATATTTGTCTTGTTTAAGAGATAAATTTTGATTCTATCCAAAA-CGG-TGGAAAG
1 CT-AGAATCAATGCTTGCCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGAT--AAAG
* * * * * * * * * *
1958264 ATAAGCTTTTCTTGCAACACCAAAGCATCAATGTCATGTATCCTAATGA-AGGGAAGGTGTTCTT
63 AAAAGATTTCCTTGCAAAACAAAAGCATCAATATCATTTATCCTAATGAGA-AGAATGTGTT-TA
* *** * ** *
1958328 GGTTGCC-AATTTTGAAAAGAATGGAGACTGTTTG
126 AG-TGCCTAA-TCACAAAAGAATGAAGA-TCATTA
* * * ** * *
1958362 CGAGAATCGATGCATGTTTTATTTAAGGGAT-AACTTTGATTTTAAGGAAAATATGG-CAAAGAG
1 CTAGAATCAATGCTTGCCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATA-GGATAAAGAA
* * * * * *
1958425 AAGATTTCCATGCAAAAGAAAATCTTCAATATCGTTTATCCTAATGAGGAGAATGTGTTTATAGT
65 AAGATTTCCTTGCAAAACAAAAGCATCAATATCATTTATCCTAATGAGAAGAATGTGTTTA-AGT
* * *
1958490 GCTTAATCACAAAAGGAAAGAAGATC-TTG
129 GCCTAATCACAAAA-GAATGAAGATCATTA
1958519 CTAGAATC
1 CTAGAATC
1958527 TATATTTGTC
Statistics
Matches: 5350, Mismatches: 1645, Indels: 1186
0.65 0.20 0.14
Matches are distributed among these distances:
144 5 0.00
145 72 0.01
146 13 0.00
147 4 0.00
148 6 0.00
152 19 0.00
153 86 0.02
154 22 0.00
155 111 0.02
156 202 0.04
157 648 0.12
158 1672 0.31
159 2025 0.38
160 356 0.07
161 92 0.02
162 17 0.00
ACGTcount: A:0.37, C:0.14, G:0.18, T:0.31
Consensus pattern (157 bp):
CTAGAATCAATGCTTGCCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGATAAAGAAA
AGATTTCCTTGCAAAACAAAAGCATCAATATCATTTATCCTAATGAGAAGAATGTGTTTAAGTGC
CTAATCACAAAAGAATGAAGATCATTA
Found at i:1961075 original size:341 final size:340
Alignment explanation
Indices: 1960410--1961085 Score: 964
Period size: 341 Copynumber: 2.0 Consensus size: 340
1960400 ACTATGTTTA
*
1960410 TGGTGCCTAATCCTGAAAGAATAAGGATTAGTATATGTATTAATGTTTGTCTTATTTAAGAGACA
1 TGGTGCCTAATCCTGAAAGAATAAGGATTAGTATATCTATTAATGTTTGTCTTATTTAAGAGACA
* * * * * * *
1960475 AATTTTGATTCTATCCAAAATGGTGGAAAGAAAAGTTTTTCTTGCGACACCAAAGCATCAATGTC
66 AAATTTGATTCTATCAAAAACGGTGGAAAAAAAAGCTTGTCTTGCGACACCAAAGCATAAATGTC
* * * * * * *
1960540 TTGTATCCTAAAGACAGGAATGTGTTCTTGGTTGCTAATCTTGAAAAGAATGGAGACTGTTGGCA
131 GTGTACCCTAAAGACAGGAATGTGTTCTTAGTTCCCAATCTAGAAAAGAAAGGAGACTGTTGGCA
* ** * * * *
1960605 AGAATCGATGCTTGTTTTATTTAAGGGATAACTTTGGTTTTAAGGAAAATATGGCAAAGAACAGA
196 AGAATCAATGCTTGCCTTATTTAAGAGATAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGA
*
1960670 TGTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAACGTGTTTATAGTACCT
261 TGTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAACATGTTTATAGTACCT
1960735 AATCACAAAAGCTTT
326 AATCACAAAAGCTTT
* * * *
1960750 TGGTGCCTAATCCTGAAACGAAT-GGGCATTAGTGTGA-CTATTCATGTTTGTTTTATTTAAGAG
1 TGGTGCCTAATCCTGAAA-GAATAAGG-ATTAGTAT-ATCTATTAATGTTTGTCTTATTTAAGAG
*
1960813 ACAAAATTTGATTCTATCAAAAACGGTTGAAAAAAAAGCTTGTCTTGCGACACCAAAGCATAAAT
63 ACAAAATTTGATTCTATCAAAAACGGTGGAAAAAAAAGCTTGTCTTGCGACACCAAAGCATAAAT
* *
1960878 GTCGTGTACCCTAATGA-AGGGAATGTGTTTTTAGTTCCCAATCTAGAAAAGAAAGGAGACTGTT
128 GTCGTGTACCCTAAAGACA-GGAATGTGTTCTTAGTTCCCAATCTAGAAAAGAAAGGAGACTGTT
* *
1960942 -GCGAGAATCAATGCTTGCCTTATTTAAGAGATGAATTTTGATTTTAAGGAAAATAGGGCAAAGA
192 GGCAAGAATCAATGCTTGCCTTATTTAAGAGAT-AACTTTGATTTTAAGGAAAATAGGGCAAAGA
* * *
1961006 AAAGTTTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATATGTTTATAG
256 AAAGATGTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAACATGTTTATAG
1961071 TACCTAATCACAAAA
321 TACCTAATCACAAAA
1961086 TTAATGAATA
Statistics
Matches: 296, Mismatches: 35, Indels: 9
0.87 0.10 0.03
Matches are distributed among these distances:
340 48 0.16
341 247 0.83
342 1 0.00
ACGTcount: A:0.36, C:0.13, G:0.19, T:0.31
Consensus pattern (340 bp):
TGGTGCCTAATCCTGAAAGAATAAGGATTAGTATATCTATTAATGTTTGTCTTATTTAAGAGACA
AAATTTGATTCTATCAAAAACGGTGGAAAAAAAAGCTTGTCTTGCGACACCAAAGCATAAATGTC
GTGTACCCTAAAGACAGGAATGTGTTCTTAGTTCCCAATCTAGAAAAGAAAGGAGACTGTTGGCA
AGAATCAATGCTTGCCTTATTTAAGAGATAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGA
TGTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAACATGTTTATAGTACCT
AATCACAAAAGCTTT
Found at i:1962748 original size:158 final size:157
Alignment explanation
Indices: 1962589--1963429 Score: 462
Period size: 158 Copynumber: 5.3 Consensus size: 157
1962579 TTGTGAGAAG
* **
1962589 AAAGCCTTTCTTGCGAAACCAAAGCATCAACATTGTCTATCCTAATGAGAAGACTATGTTTATGT
1 AAAGCCTTTCTTGCGAAACCAAAGCATCAATATCATCTATCCTAATGAGAAGACTATGTTTATGT
*
1962654 TGCCTAATCTTAAAAAGAATGGGGATTACGATGACTATTAATGCTTGTCATTTTTGAGAGACAAG
66 TGCCTAATCTTAAAAAGAATGGGGATTA-GATGACTATTAATGCTTGTCATTTTTAAGAGACAA-
1962719 CTTTGATTCTATCAAAAATGGTAAAAAGA
129 CTTTGATTCTATCAAAAATGGTAAAAAGA
** * * * * *
1962748 AAAGTTTTTCTTGC-AGCACCAAAGCATCAATGTCATGTATCCTAATGAAGAA-AATGTGTTCT-
1 AAAGCCTTTCTTGCGA-AACCAAAGCATCAATATCATCTATCCTAATG-AGAAGACTATGTT-TA
** * * * *
1962810 TGGTT-CCTAATCTTGAAAAA-AGATGAGACAATT-GTTAGA--ATCAGA-GCTTGTGATATTTA
63 T-GTTGCCTAATCTT-AAAAAGA-ATG-G-GGATTAGAT-GACTATTA-ATGCTTGTCATTTTTA
* * * * * *** * **
1962869 AGGGATGAATTTTTATTTTAAGGAAAATAGTGCAAAGA
121 AGAGA-CAACTTTGATTCTATCAAAAATGGTAAAAAGA
* ** * * ** * * ** * * * * *
1962907 AAGGATTTTCATGCAAAAGAAAATG-ATCAATATCATTTATCCCAACAAGGAGAATGTTTTTAAA
1 AAAGCCTTTCTTGCGAAACCAAA-GCATCAATATCATCTATCCTAATGAGAAGACTATGTTT-AT
** * ** * * * * ** *
1962971 GTT-CCTAATCACAAAATGAATGAAGA-T-CATTACTA-GAATCCTTGTTTGTCTCATTTGAG-G
64 GTTGCCTAATCTTAAAAAGAATGGGGATTAGATGACTATTAATGCTTG-TCAT-T--TTTAAGAG
* * * *
1963031 CACGAACTTAGACTT-TATCAAAATTGGTCAGAAG-
125 -AC-AACTTTGA-TTCTATCAAAAATGGTAAAAAGA
* * * * *
1963065 AAAGCGTTTCTTGTGAAACCAAAGCATTAACATCATCTATCCTAATGGGAAGACTATGTTTATGT
1 AAAGCCTTTCTTGCGAAACCAAAGCATCAATATCATCTATCCTAATGAGAAGACTATGTTTATGT
*
1963130 TGCCTAATCTTAAAAAGAATGGGGATTAGGATGACTATTAATGTTTGTCATTTTTAAGAGACAAG
66 TGCCTAATCTTAAAAAGAATGGGGATTA-GATGACTATTAATGCTTGTCATTTTTAAGAGACAA-
1963195 CTTTGATTCTATCAAAAATGGTAAAAAGA
129 CTTTGATTCTATCAAAAATGGTAAAAAGA
* * *** * * * * * * *
1963224 AAAGCCTTTCTTGC-AAACTAATGTGCCGATATCGTGTATCCTTATGACAAGACTATGCTTATGG
1 AAAGCCTTTCTTGCGAAACCAAAGCATCAATATCATCTATCCTAATGAGAAGACTATGTTTATGT
* ** * *
1963288 TGCCTAATCTTGAAAAGAATAAGGATTAGTATGAGTATTAATGTTTGTC-TTATTTAAGAGACAA
66 TGCCTAATCTTAAAAAGAATGGGGATTAG-ATGACTATTAATGCTTGTCATT-TTTAAGAGAC-A
* * * **
1963352 ATTTTGATTCTATCTAAAACGGTGGAAAGA
128 ACTTTGATTCTATCAAAAATGGTAAAAAGA
* * * *
1963382 AAAG-CTTTCCTTGTGACACCAAAGCATCAATGTCATGTATCCTAATGA
1 AAAGCCTTT-CTTGCGAAACCAAAGCATCAATATCATCTATCCTAATGA
1963430 AGGGAAGGTG
Statistics
Matches: 497, Mismatches: 143, Indels: 84
0.69 0.20 0.12
Matches are distributed among these distances:
154 2 0.00
155 7 0.01
156 4 0.01
157 16 0.03
158 219 0.44
159 203 0.41
160 26 0.05
161 11 0.02
162 9 0.02
ACGTcount: A:0.36, C:0.14, G:0.18, T:0.32
Consensus pattern (157 bp):
AAAGCCTTTCTTGCGAAACCAAAGCATCAATATCATCTATCCTAATGAGAAGACTATGTTTATGT
TGCCTAATCTTAAAAAGAATGGGGATTAGATGACTATTAATGCTTGTCATTTTTAAGAGACAACT
TTGATTCTATCAAAAATGGTAAAAAGA
Found at i:1962907 original size:952 final size:948
Alignment explanation
Indices: 1960743--1963237 Score: 3220
Period size: 952 Copynumber: 2.6 Consensus size: 948
1960733 CTAATCACAA
* * * * * *
1960743 AAGCTTTTGGTGCCTAATCCTGAAACGAATGGGCATTAGTGTGACTATTCATGTTTGT-TTTATT
1 AAGCTTTTGGTGCCTAATCCTAAAAAGAATGGGCATTAGTATGACTATTAATGCTTGTCATT-TT
* *
1960807 TAAGAGACAAAATTTGATTCTATCAAAAACGGTTGAAAAAAAAGCTTGTCTTGCGACACCAAAGC
65 TAAGAGACAAGATTTGATTCTATCAAAAACGGTTGAAAAAAAAGCTTTTCTTGCGACACCAAAGC
* * * * *
1960872 ATAAATGTCGTGTACCCTAATGAAGGGAATGTGTTTTTAGTTCCCAATCTAGAAAAGAA-AGGAG
130 ATCAATGTCATGTACCCTAATGAAGGGAATGTGTTTTTGGTTCCCAATCTTGAAAA-AAGATGAG
*
1960936 AC-TGTTGCGAGAATCAATGCTTGCCTTATTTAAGAGATGAATTTTGATTTTAAGGAAAATAGGG
194 ACTTGTT---AGAATCAATGCTTGCCTTATTTAAGGGATGAATTTTGATTTTAAGGAAAATAGGG
* * *
1961000 CAAAGAAAAGTTTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATATGT
256 CAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAACGAGGAGAATGTGT
* * * *
1961065 TTATAGTACCTAATCACAAAATTAATGAATATCGA-TATTAGAATCCATGTTTGTCTTATTTGAG
321 TTATAGTACCTAATCACAAAATGAATGAAGATC-ATTACTAGAATCCTTGTTTGTCTTATTTGAG
* * ** * *
1961129 GCATGAACTTAGACTTTACAAAAATTGAG-GGGGAGAAAGCCTTTCTTGTGAAA-GTAATGCATC
385 GCACGAACTTAGACTTTATAAAAATT-AGTCAGAAGAAAGCCTTTCTTGTGAAACG-AAAGCATC
* * * *
1961192 AATATCA-CATATCCTT-ATGAGAAGACTATGTTTATGATGCCTAATCCTG-AAAGAATAAGGAT
448 AACATCATC-TAT-CTTAATGAGAAGACTATGTTTATGTTGCCTAATCTTGAAAAGAATAGGGAT
* * * * * * *
1961254 TAGTATGAGTATTAATGTTTGTCTTATTTAAGAGGTAAATTTTGATTTTATCCAAAATGGTGGAA
511 TAGTATGACTATTAATGTTTGTCATATTTAAGAGATAAGTTTTGATTCTATCAAAAATGGTGAAA
1961319 AGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAAGAAGGGAATGTGTTCTT
576 AGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAAGAAGGGAATGTGTTCTT
* * * *
1961384 GGTTGCCAATCTTGAAAAGAATGGAGACTGTTGGCGAGAATCGATGCTTATCTTATTTAAGGGAT
641 GGTTCCCAATCTTGAAAAGAATGGAGACTGTTGGCGAGAATCGATGCTGATCATATTTAAGAGAT
* *
1961449 AACATTGAATTTAAGGAAAATATGGCAAAGAAAAGATTTTCATGCAAAAGAAAATCATCAATATC
706 AACATTGAATTTAAGGAAAATAGGGCAAAGAAAAGATTTTCATCCAAAAGAAAATCATCAATATC
*
1961514 ATTTATCCTAATGAGGAGAATGTGTTTATAGCGCCTAATCACAAAAGGAATGAAGATCTTACTAG
771 ATTTATCCTAATGAGGAGAATGTGTTTATAGCGCCTAATCACAAAAGGAATGAAGATCTTACAAG
* ** * * * *
1961579 AATCTATATTTGTGTCATTTGAGGCACGAATATAGACTTTACAAAAATTGGTGAGAAGAAAGCTT
836 AATCCATATTTGACTCATTTGAGGCACAAACATACACTTTACAAAAATTGGTGAGAAGAAAGCCT
*
1961644 TTCTGGCGAAACCAAAGCATCAATCTCCTATATCCTTATGAGAAAACT
901 TTCTGGCGAAACCAAAGCATCAATCTCCTATATCCTAATGAGAAAACT
* * * * * **
1961692 AAGCTTTTGGTGCCTAATCCTAAAACGAATGGGCATTAGTATGAGTTTTCATGTTTGTTTTTTTT
1 AAGCTTTTGGTGCCTAATCCTAAAAAGAATGGGCATTAGTATGACTATTAATGCTTGTCATTTTT
*
1961757 AAGAGAC-AGAATTTAATTCTATCAAAAACGGTTGAAAAAAAAGCTTTTCTTGCGACACCAAAGC
66 AAGAGACAAG-ATTTGATTCTATCAAAAACGGTTGAAAAAAAAGCTTTTCTTGCGACACCAAAGC
* *
1961821 ATCAATGTCATGTACCCTAATGAAGGGAATATGTTTTTGGTTCCCAATC-T-ATAAAAGAATGGA
130 ATCAATGTCATGTACCCTAATGAAGGGAATGTGTTTTTGGTTCCCAATCTTGAAAAAAG-AT-GA
1961884 GAC-TGTTAGGACAATCAATGCTTGCCTTATTTAAGGGATGAATTTTGATTTTAAGGAAAATAGG
193 GACTTGTTA-G--AATCAATGCTTGCCTTATTTAAGGGATGAATTTTGATTTTAAGGAAAATAGG
*
1961948 GCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCATTATCATTTATCCTAACGAGGAGAATGTG
255 GCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAACGAGGAGAATGTG
* * * **
1962013 TTTATAGTGCCTAATCACAAAATGAATTAAGAACATTACTAGGTTCCTTGTTTGTCTTATTTGAG
320 TTTATAGTACCTAATCACAAAATGAATGAAGATCATTACTAGAATCCTTGTTTGTCTTATTTGAG
* * * **
1962078 GCACAAACTTAGACTTGATAAAAATTAGTTAGAAGAAAGCCTTTCTTGCAAAACGAAAGCATCAA
385 GCACGAACTTAGACTTTATAAAAATTAGTCAGAAGAAAGCCTTTCTTGTGAAACGAAAGCATCAA
* * *
1962143 CATCATCTATCTTAATGAGAGGACTATGTTTTTGTTGCCTAATCTTGAAAAGAATTGGGATTAGT
450 CATCATCTATCTTAATGAGAAGACTATGTTTATGTTGCCTAATCTTGAAAAGAATAGGGATTAGT
* * * *
1962208 ATGACTATTCATGTTTGTCATATTTAAGAGATAAGTTTTCATTCTATCAAAAACGATGAAAAGAA
515 ATGACTATTAATGTTTGTCATATTTAAGAGATAAGTTTTGATTCTATCAAAAATGGTGAAAAGAA
* *
1962273 AAGCTTTTCTTGCGGCACCCAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTCTTGGT
580 AAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAA-GAAGGGAATGTGTTCTTGGT
* * *
1962338 TCCCAATCTTGAAAAGAATGGAGA-TAGTT-GTGAGAATCGATGGTGGTCATATTTAAGAGATAA
644 TCCCAATCTTGAAAAGAATGGAGACT-GTTGGCGAGAATCGATGCTGATCATATTTAAGAGATAA
** * *
1962401 TTTTTGATTTTAAGGAAAATAGGGCAAAGAAAAG-TTTTCCATCCAAAAGAAAATCATCATTATC
708 -CATTGAATTTAAGGAAAATAGGGCAAAGAAAAGATTTT-CATCCAAAAGAAAATCATCAATATC
* * *
1962465 ATTTATCCT-ATCGAGGAGATTGTGTTTATAGTGCCTAATCA-AAAATTGAATGAAGATCATTAC
771 ATTTATCCTAAT-GAGGAGAATGTGTTTATAGCGCCTAATCACAAAA-GGAATGAAGATC-TTAC
* * ** * *
1962528 AAGCATCCATGTTTGACTCATTTGAGTTACAAACCTACACTTTACAAAAATTTGTGAGAAGAAAG
833 AAGAATCCATATTTGACTCATTTGAGGCACAAACATACACTTTACAAAAATTGGTGAGAAGAAAG
* ** * *
1962593 CCTTTCTTGCGAAACCAAAGCATCAA-CATTGTCTATCCTAATGAGAAGACT
898 CCTTTCTGGCGAAACCAAAGCATCAATC-TCCTATATCCTAATGAGAAAACT
* * * *
1962644 ATG-TTTATGTTGCCTAATCTTAAAAAGAATGGGGATTACG-ATGACTATTAATGCTTGTCATTT
1 AAGCTTT-TGGTGCCTAATCCTAAAAAGAATGGGCATTA-GTATGACTATTAATGCTTGTCATTT
* * * * *
1962707 TTGAGAGACAAGCTTTGATTCTATCAAAAATGG-TAAAAAGAAAAGTTTTTCTTGC-AGCACCAA
64 TTAAGAGACAAGATTTGATTCTATCAAAAACGGTTGAAAA-AAAAGCTTTTCTTGCGA-CACCAA
* ** * *
1962770 AGCATCAATGTCATGTATCCTAATGAAGAAAATGTGTTCTTGGTTCCTAATCTTGAAAAAAGATG
127 AGCATCAATGTCATGTACCCTAATGAAGGGAATGTGTTTTTGGTTCCCAATCTTGAAAAAAGATG
*** *
1962835 AGACAATTGTTAGAATCAGA-GCTTGTGATATTTAAGGGATGAATTTTTATTTTAAGGAAAATAG
192 AGAC--TTGTTAGAATCA-ATGCTTGCCTTATTTAAGGGATGAATTTTGATTTTAAGGAAAATAG
* * * * * *
1962899 TGCAAAGAAAGGATTTTCATGCAAAAGAAAATGATCAATATCATTTATCCCAACAAGGAGAATGT
254 GGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAACGAGGAGAATGT
* * * *
1962964 TTTTAAAGTTCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCTTGTTTGTCTCATTTGA
319 GTTTATAGTACCTAATCACAAAATGAATGAAGATCATTACTAGAATCCTTGTTTGTCTTATTTGA
* * * * *
1963029 GGCACGAACTTAGACTTTATCAAAATTGGTCAGAAGAAAGCGTTTCTTGTGAAACCAAAGCATTA
384 GGCACGAACTTAGACTTTATAAAAATTAGTCAGAAGAAAGCCTTTCTTGTGAAACGAAAGCATCA
* * * *
1963094 ACATCATCTATCCTAATGGGAAGACTATGTTTATGTTGCCTAATCTTAAAAAGAATGGGGATTAG
449 ACATCATCTATCTTAATGAGAAGACTATGTTTATGTTGCCTAATCTTGAAAAGAATAGGGATTAG
* * * * *
1963159 GATGACTATTAATGTTTGTCATTTTTAAGAGACAAGCTTTGATTCTATCAAAAATGGTAAAAAGA
514 TATGACTATTAATGTTTGTCATATTTAAGAGATAAGTTTTGATTCTATCAAAAATGGTGAAAAGA
*
1963224 AAAGCCTTTCTTGC
579 AAAGCTTTTCTTGC
1963238 AAACTAATGT
Statistics
Matches: 1350, Mismatches: 163, Indels: 63
0.86 0.10 0.04
Matches are distributed among these distances:
946 3 0.00
947 4 0.00
948 8 0.01
949 422 0.31
950 155 0.11
951 155 0.11
952 584 0.43
953 7 0.01
954 7 0.01
955 5 0.00
ACGTcount: A:0.36, C:0.14, G:0.18, T:0.32
Consensus pattern (948 bp):
AAGCTTTTGGTGCCTAATCCTAAAAAGAATGGGCATTAGTATGACTATTAATGCTTGTCATTTTT
AAGAGACAAGATTTGATTCTATCAAAAACGGTTGAAAAAAAAGCTTTTCTTGCGACACCAAAGCA
TCAATGTCATGTACCCTAATGAAGGGAATGTGTTTTTGGTTCCCAATCTTGAAAAAAGATGAGAC
TTGTTAGAATCAATGCTTGCCTTATTTAAGGGATGAATTTTGATTTTAAGGAAAATAGGGCAAAG
AAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAACGAGGAGAATGTGTTTATA
GTACCTAATCACAAAATGAATGAAGATCATTACTAGAATCCTTGTTTGTCTTATTTGAGGCACGA
ACTTAGACTTTATAAAAATTAGTCAGAAGAAAGCCTTTCTTGTGAAACGAAAGCATCAACATCAT
CTATCTTAATGAGAAGACTATGTTTATGTTGCCTAATCTTGAAAAGAATAGGGATTAGTATGACT
ATTAATGTTTGTCATATTTAAGAGATAAGTTTTGATTCTATCAAAAATGGTGAAAAGAAAAGCTT
TTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAAGAAGGGAATGTGTTCTTGGTTCCCAAT
CTTGAAAAGAATGGAGACTGTTGGCGAGAATCGATGCTGATCATATTTAAGAGATAACATTGAAT
TTAAGGAAAATAGGGCAAAGAAAAGATTTTCATCCAAAAGAAAATCATCAATATCATTTATCCTA
ATGAGGAGAATGTGTTTATAGCGCCTAATCACAAAAGGAATGAAGATCTTACAAGAATCCATATT
TGACTCATTTGAGGCACAAACATACACTTTACAAAAATTGGTGAGAAGAAAGCCTTTCTGGCGAA
ACCAAAGCATCAATCTCCTATATCCTAATGAGAAAACT
Found at i:1963539 original size:112 final size:112
Alignment explanation
Indices: 1963342--1963562 Score: 388
Period size: 112 Copynumber: 2.0 Consensus size: 112
1963332 TTGTCTTATT
* *
1963342 TAAGAGACAAATTTTGATTCTATCTAAAACGGTGGAAAGAAAAGCTTTCCTTGTGACACCAAAGC
1 TAAGAGACAAATTTTGATTCTATCCAAAACGGTGGAAAGAAAAGCTTTCCTTCTGACACCAAAGC
1963407 ATCAATGTCATGTATCCTAATGAAGGGAAGGTGTTTTTGGTTGCCAA
66 ATCAATGTCATGTATCCTAATGAAGGGAAGGTGTTTTTGGTTGCCAA
* * *
1963454 TAAGAGATAAATTTTGATTCTATCCAAAAGGGTGGAAAGAAAAGCTTTGCTTCTGACACCAAAGC
1 TAAGAGACAAATTTTGATTCTATCCAAAACGGTGGAAAGAAAAGCTTTCCTTCTGACACCAAAGC
*
1963519 ATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTTGGTTGC
66 ATCAATGTCATGTATCCTAATGAAGGGAAGGTGTTTTTGGTTGC
1963563 GAATCTTGAA
Statistics
Matches: 103, Mismatches: 6, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
112 103 1.00
ACGTcount: A:0.33, C:0.14, G:0.22, T:0.30
Consensus pattern (112 bp):
TAAGAGACAAATTTTGATTCTATCCAAAACGGTGGAAAGAAAAGCTTTCCTTCTGACACCAAAGC
ATCAATGTCATGTATCCTAATGAAGGGAAGGTGTTTTTGGTTGCCAA
Found at i:1964057 original size:586 final size:571
Alignment explanation
Indices: 1963282--1964600 Score: 1680
Period size: 586 Copynumber: 2.3 Consensus size: 571
1963272 AAGACTATGC
* *
1963282 TTATGGTGCCTAATCTTGAAAAGAATAAGGATTAGTATGAGTATTAATGTTTGTCTTATTTAAGA
1 TTATGGTGCCTAATCTTGAAAAGAATAGGGATTAGTATGAGTATTAATGTTTGTCTTATTTAAAA
* * * *
1963347 GACAAATTTTGATTCTATCTAAAACGGTGGAAAGAAAAGCTTTCCTTGTGACACCAAAGCATCAA
66 GACAAACTTTGATTCTATCAAAAACGGT-GAAA-AAAAGCTTTTCTTGCGACACCAAAGCATCAA
*
1963412 TGTCATGTATCCTAATGAAGGGAAGGTGTTTTTGGTTGCCAATAAGAGATAAATTTTGATTCTAT
129 TGTCATGTATCCTAATGAAGGGAATGTGTTTTTGGTTGCCAATAAGAGATAAATTTTGATTCTAT
* * *
1963477 CCAAAAGGGTGGAAAGAAAAGCTTTGCTT-CTGACACCAAAGCATCAATGTCATGTATCCTAATG
194 CCAAAAGGATGAAAAGAAAAGCTTTGCTTAC-GACACCAAAGCATCAATGTCATGTATCCTAAAG
* * * * * * * * * *
1963541 AAGGGAATGTGTTTTTGGTTGCGAATCTTGAAAAGAATGGAGACTGTTGGCAAGAATCGATGCTT
258 AAAGGAATGCGTTATGGGTTCCCAATATTAAAAAGAATGGAGACAGTT-GCAAGAATCAATGCTT
** * *
1963606 GTTTTATTTAAGGGAT-AACTTTGATTTTAAGGAAAATCTGGCAAATAAAAGATTTGCATGCAAA
322 GTGATATTGAAAGGATGAACTTTGATTTTAA-GAAAA----G---ATAAAA-A----CA--CAAA
* * **
1963670 AGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAATGCCTAATCACAAAAGG
372 AAAAAATCATCAATATCAATTATCCTAATGAGGAGAATGTGTTTATAACCCCTAATCACAAAAGG
* * * *
1963735 AATGAAG-ATC-TTACTAGAATCTATGTTTGTCTCATTTAAGGCACGAACATAGACTTTACAAAA
437 AATG-AGTATCATTAATAGAATCCATGTCTGTCTCATTTAAGGCACGAACATACACTTTACAAAA
*** * * **
1963798 ATTGGTGAGAAGAAAGCTTTTATGGTGAAACCAAAGCATCAATATC-CTGTATCCTTGTGAGGTA
501 ATTGGTGAGAAGAAAGCTTTTATGACAAAACAAAAGCATAAATATCGC-GTATCCTTGTGAGACA
1963862 ACTAAGT
565 ACTAAGT
* * * * *
1963869 TTTTGGTGCCTAATCCTGAAATGAAT-GGGCATTAGTATGAGTATTAATATTTGTTTTATTTAAA
1 TTATGGTGCCTAATCTTGAAAAGAATAGGG-ATTAGTATGAGTATTAATGTTTGTCTTATTTAAA
*
1963933 AGACAAACTTTGATTCTATCAAAAACGGCTGAAAAAAAGCTTTTCTTGCGGCACCAAAGCATCAA
65 AGACAAACTTTGATTCTATCAAAAACGG-TGAAAAAAAGCTTTTCTTGCGACACCAAAGCATCAA
1963998 TGTCATGTATCCTAATGAAGGGAATGTGTTTTTGGTTGCCAATAAGAGATAAATTTTGATTCTAT
129 TGTCATGTATCCTAATGAAGGGAATGTGTTTTTGGTTGCCAATAAGAGATAAATTTTGATTCTAT
* *
1964063 CCAAAATGATGAAAAGAAAAGCTTTTCTTACGACACCAAAGCATCAATGTCATGTATCCTAAAGA
194 CCAAAAGGATGAAAAGAAAAGCTTTGCTTACGACACCAAAGCATCAATGTCATGTATCCTAAAGA
*
1964128 AAGGAATGCGTTATGGGTTCCCATTATTAAAAAGAATGGAGACAGTTGCAAGAATCAATGCTTGT
259 AAGGAATGCGTTATGGGTTCCCAATATTAAAAAGAATGGAGACAGTTGCAAGAATCAATGCTTGT
* ***
1964193 GATATTGAAAGGATGAATTTTGATTTTAAGAAAAGATTTCAACACAAAAAAAAATCATCAATATC
324 GATATTGAAAGGATGAACTTTGATTTTAAGAAAAGATAAAAACACAAAAAAAAATCATCAATATC
* * *
1964258 AATTATCCTAATGAGGAGAATGTGTTTATAGCCCCTAATCATAAAAGGAATGAGTGTCATTAATA
389 AATTATCCTAATGAGGAGAATGTGTTTATAACCCCTAATCACAAAAGGAATGAGTATCATTAATA
** * * *** *
1964323 GAATCCATGTCTGTCTCATTTGGGGCATGAACTTACACTTTATGGAAATTGGTGGGAAGAAAGCT
454 GAATCCATGTCTGTCTCATTTAAGGCACGAACATACACTTTACAAAAATTGGTGAGAAGAAAGCT
* * * * * * *
1964388 TTTCTTACAAAACAAAATCGTAAATATCGCGTATCCTTTTGAGACGACTATGT
519 TTTATGACAAAACAAAAGCATAAATATCGCGTATCCTTGTGAGACAACTAAGT
*
1964441 TTACGGTGCCTAATCTTGAAAAGAATAGGGATTAGTATGAGTATTAATGTTTGTCTTA-TTAAAG
1 TTATGGTGCCTAATCTTGAAAAGAATAGGGATTAGTATGAGTATTAATGTTTGTCTTATTTAAA-
* * *
1964505 AGACAAACTTTGTTTCTATAAAAAACAGTTGAACAAAAAGCTTTTCTTGCGACACCAAAGCATCA
65 AGACAAACTTTGATTCTATCAAAAAC-GGTGAA-AAAAAGCTTTTCTTGCGACACCAAAGCATCA
*
1964570 ATGTCATGTATCCTAAGGAAGGGAATGTGTT
128 ATGTCATGTATCCTAATGAAGGGAATGTGTT
1964601 CTGGGTTCCC
Statistics
Matches: 640, Mismatches: 81, Indels: 36
0.85 0.11 0.05
Matches are distributed among these distances:
570 2 0.00
571 74 0.12
572 172 0.27
573 67 0.10
577 1 0.00
578 3 0.00
581 1 0.00
585 32 0.05
586 202 0.32
587 85 0.13
588 1 0.00
ACGTcount: A:0.36, C:0.13, G:0.19, T:0.31
Consensus pattern (571 bp):
TTATGGTGCCTAATCTTGAAAAGAATAGGGATTAGTATGAGTATTAATGTTTGTCTTATTTAAAA
GACAAACTTTGATTCTATCAAAAACGGTGAAAAAAAGCTTTTCTTGCGACACCAAAGCATCAATG
TCATGTATCCTAATGAAGGGAATGTGTTTTTGGTTGCCAATAAGAGATAAATTTTGATTCTATCC
AAAAGGATGAAAAGAAAAGCTTTGCTTACGACACCAAAGCATCAATGTCATGTATCCTAAAGAAA
GGAATGCGTTATGGGTTCCCAATATTAAAAAGAATGGAGACAGTTGCAAGAATCAATGCTTGTGA
TATTGAAAGGATGAACTTTGATTTTAAGAAAAGATAAAAACACAAAAAAAAATCATCAATATCAA
TTATCCTAATGAGGAGAATGTGTTTATAACCCCTAATCACAAAAGGAATGAGTATCATTAATAGA
ATCCATGTCTGTCTCATTTAAGGCACGAACATACACTTTACAAAAATTGGTGAGAAGAAAGCTTT
TATGACAAAACAAAAGCATAAATATCGCGTATCCTTGTGAGACAACTAAGT
Found at i:1969066 original size:158 final size:158
Alignment explanation
Indices: 1968904--1969559 Score: 405
Period size: 158 Copynumber: 4.1 Consensus size: 158
1968894 GACTATAAAA
* *
1968904 AGAATCGATGCTTGTCTTATTTAAGGGAAGAACTTTGATTTTAAAAAA-AGTAGGACAAAGAAAA
1 AGAATCCATGTTTGTCTTATTTAAGGGAAGAACTTTGATTTTAAAAAACAGTAGGACAAAGAAAA
* * * **
1968968 GATTTTCATGCAAAAG-AAAGCATCAATATCATTTAACCTAATTAGGAGAATGTGTTTATAGTTC
66 CATTTTCATGCAAAAGAAAAGCATCAATATCATTTATCCTAATAAGGAGAATGTGTTTATAGAGC
*
1969032 CTAATCAAAAAATGAATGAAGATCATTACT
131 CTAATCAGAAAA-GAATGAAGATCATTA-T
* * * * * ** *
1969062 AGAATCCATGTTTGT-TTCATTTGAGGCACGAA-TTTACACTTTACAAAAATGGGTGGGAC---G
1 AGAATCCATGTTTGTCTT-ATTTAAGGGAAGAACTTT-GATTTTA-AAAAA-CAGTAGGACAAAG
* * * ** ** * * * *
1969122 AAAGC-CTTTCTTGCAAAATTAAAGTGTCAATATCATCTATCCTAATAAGGAGACTATGTTTATG
62 AAAACATTTTCATGCAAAAGAAAAGCATCAATATCATTTATCCTAATAAGGAGAATGTGTTTATA
* * * * *
1969186 GAGCCTAATCCTGAAAAGAGTTG-GGATTACTAT
127 GAGCCTAAT-CAGAAAAGA-ATGAAGATCATTAT
* * * *
1969219 AGATATTCTTGTTTGTCTTATTTTAGAGACA-AACTTTGATTCTATCAAAAAACAGT-GG--AAA
1 AGA-ATCCATGTTTGTCTTATTTAAGGGA-AGAACTTTGATT-T-T-AAAAAACAGTAGGACAAA
* * ** * * * *
1969280 GAAAACTTTTTCTTGTGACAGCAAAGCATCAATGTCATTTATCCTAATGAAGG-GAATGTGTTTT
61 GAAAACATTTTCATGCAAAAGAAAAGCATCAATATCATTTATCCTAAT-AAGGAGAATGTGTTTA
* * * ** *
1969344 TGGATCCCAATCACGAAAA-AATGGCGA-CTGTTAT
125 TAGAGCCTAATCA-GAAAAGAATGAAGATC-ATTAT
* * * * * *
1969378 GAGAATCGATGCTTGCCTTATTTAAGGGATGAACTTTGATTTTAAAGAAA-A-TAGGGCAAAGGA
1 -AGAATCCATGTTTGTCTTATTTAAGGGAAGAACTTTGATTTTAAA-AAACAGTAGGACAAAGAA
* * * * *
1969441 AACATTTCCATGCAAAAGAAAATCATCAACATAATTTATCTTAATGAA-GAGAATGTGTTTATAG
64 AACATTTTCATGCAAAAGAAAAGCATCAATATCATTTATCCTAAT-AAGGAGAATGTGTTTATAG
* * *
1969505 TGCCTAATCACAAAATGAATGAAGATCAATACT
128 AGCCTAATCAGAAAA-GAATGAAGATCATTA-T
*
1969538 AGAATCCATGTTTGACTTATTT
1 AGAATCCATGTTTGTCTTATTT
1969560 GAGGCACGAA
Statistics
Matches: 368, Mismatches: 96, Indels: 67
0.69 0.18 0.13
Matches are distributed among these distances:
155 1 0.00
156 6 0.02
157 29 0.08
158 170 0.46
159 87 0.24
160 64 0.17
161 11 0.03
ACGTcount: A:0.37, C:0.13, G:0.18, T:0.32
Consensus pattern (158 bp):
AGAATCCATGTTTGTCTTATTTAAGGGAAGAACTTTGATTTTAAAAAACAGTAGGACAAAGAAAA
CATTTTCATGCAAAAGAAAAGCATCAATATCATTTATCCTAATAAGGAGAATGTGTTTATAGAGC
CTAATCAGAAAAGAATGAAGATCATTAT
Found at i:1973433 original size:339 final size:338
Alignment explanation
Indices: 1972804--1973543 Score: 1185
Period size: 339 Copynumber: 2.2 Consensus size: 338
1972794 TAATGAAGGG
* * * * * * * *
1972804 ATCATTATTAGAATCCATGATTGTCTTAATTGTGACATCAACTGAAACTTTACAAATATTGGTGG
1 ATCATTACTAGAATCCATGTTTGCCTCAATTGTGGCATGAACTTAAACTTTACAAATATTGGTGC
* * *
1972869 GATTTTATCAGAAACAATGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGCAT
66 GATTTTATCAAAAACAATGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATATAATGCAT
* * * *
1972934 CCTAATTAAAGGAATGTGTTCTTGGTTCCCAACCTTGAAAAGAATGGAGACTGTTATGAGAATCG
131 CCTAATTAAAGGAATGTGTTCTTGGTTCCCAACCTTAAAAAGAATAGAGACTATTATCAGAATCG
*
1972999 ATCCTAGTCATATTTATGGGATGAATTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCA
196 ATCCTAGTCATATTTAAGGGATGAATTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCA
1973064 TCCAAAAAAAAGTCATCAATATCATATATCCTAATAAAGAGAATGTGTTCATAGTGCCTTATCAC
261 TCCAAAAAAAAGTCATCAATATCATATATCCTAATAAAGAGAATGTGTTCATAGTGCCTTATCAC
1973129 AAAATGAATGAAA
326 AAAATGAATGAAA
* *
1973142 ATCTTTACTCGAATCCATGTTTGCCTCAATTGTGGCATGAACTTAAACTTTACAAATATTGGTGC
1 ATCATTACTAGAATCCATGTTTGCCTCAATTGTGGCATGAACTTAAACTTTACAAATATTGGTGC
**
1973207 GATTTTATCAAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATATAATGCA
66 GATTTTATC-AAAAACAATGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATATAATGCA
* *
1973272 TCCTAATTAAAGGAATGTTTTCTTGGTTCCCAATCTTAAAAAGAATAGAGACTATTATCAGAATC
130 TCCTAATTAAAGGAATGTGTTCTTGGTTCCCAACCTTAAAAAGAATAGAGACTATTATCAGAATC
* *
1973337 GATTCTAGTCATATTTAAGGGATGAATTTTTTATTTTAAGGAAAATAGGGCAAAGAAAAGATTTC
195 GATCCTAGTCATATTTAAGGGATGAA-TTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTC
* * *
1973402 TATCCAAAAAAAA-TCATCAATATCATATATCCTAATAAGGATAATGTGTTCATAGTGCCTTATC
259 CATCCAAAAAAAAGTCATCAATATCATATATCCTAATAAAGAGAATGTGTTCATAGTGCCTTATC
*
1973466 ACAAAATGAATGAAG
324 ACAAAATGAATGAAA
* *
1973481 ATCATTACTAGAATCCATGTTTGCCTCAATTGTGGCACGAACTTAAACTTTACAAAAATTGGT
1 ATCATTACTAGAATCCATGTTTGCCTCAATTGTGGCATGAACTTAAACTTTACAAATATTGGT
1973544 AGGAAGAAAG
Statistics
Matches: 368, Mismatches: 32, Indels: 3
0.91 0.08 0.01
Matches are distributed among these distances:
338 64 0.17
339 255 0.69
340 49 0.13
ACGTcount: A:0.38, C:0.15, G:0.16, T:0.31
Consensus pattern (338 bp):
ATCATTACTAGAATCCATGTTTGCCTCAATTGTGGCATGAACTTAAACTTTACAAATATTGGTGC
GATTTTATCAAAAACAATGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATATAATGCAT
CCTAATTAAAGGAATGTGTTCTTGGTTCCCAACCTTAAAAAGAATAGAGACTATTATCAGAATCG
ATCCTAGTCATATTTAAGGGATGAATTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCA
TCCAAAAAAAAGTCATCAATATCATATATCCTAATAAAGAGAATGTGTTCATAGTGCCTTATCAC
AAAATGAATGAAA
Found at i:1974110 original size:476 final size:478
Alignment explanation
Indices: 1973207--1974118 Score: 1268
Period size: 476 Copynumber: 1.9 Consensus size: 478
1973197 ATATTGGTGC
* *
1973207 GATTTTATCAAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATATAATGCA
1 GATTCTATCAAAAAACGGTAGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATATAATGCA
*
1973272 TCCTAATTAAAGGAATGTTTTCTTGGTTCCCAATCTTAAAAAGAATAGAGACTATTATCAGAATC
66 TCCTAATTAAAGGAATGTGTTCTTGGTTCCCAATCTTAAAAAGAATAGAGACTATTATCAGAATC
* * * *
1973337 GATTCTAGTCATATTTAAGGGATGAATTTTTTATTTTAAGGAAAATAGGGCAAAGAAAAGATTTC
131 GATCCTAGTCATATTTAAAGGATGAATTTTTGATTTTAAGGAAAATAAGGCAAAGAAAAGATTTC
** *
1973402 TATCCAAAAAAAATCATCAATATCATATATCCTAATAAGGATAATGTGTTCATAGTGCCTTATCA
196 TATCCAAAAAAAATCATCAATATCATATATCCTAATAACAAGAATGTGTTCATAGTGCCTTATCA
* * * *
1973467 CAAAATGAATGAAGATCATTACTAGAATCCATGTTTGCCTCAATTGTGGCACGAACTTAAACTTT
261 CAAAATGAATGAAGATCAATACTAGAATCCATGTTTGCCTCAATTGAGACACGAACATAAACTTT
* * * *
1973532 ACAAAAATTGGTAGGAAGAAAGTCTTTCTTGCAAAACCAAAGTCTCAATATCGTCTATCCTAACG
326 ACAAAAATTGGGAGGAAGAAAGCCTTTCTTGCAAAACCAAAGTCTCAATATCATCTACCCTAACG
*
1973597 AGAAGACTATCTTTATGGTGCCTAATCCGAAAAAGAAT-AGGGATTACTATGACTATTCATGTTT
391 AGAAGACTATCTTTATAGTGCCTAATCCGAAAAAGAATGA-GGATTACTATGACTATTCATGTTT
1973661 GTCTTATTTTAGAGAGCAAACTTT
455 GTCTTATTTTAGAGAGCAAACTTT
* * * *
1973685 GATTCTATC-AAAAACGGTAGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATTAATGTCATGTA
1 GATTCTATCAAAAAACGGTAGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATATAATGCA
* * * *
1973749 TCCTAA-TGAAGGAAATGTGTTCTTGGTTCCCAATCTTGAAAAGAATGGAGACTATTGT-AGAAT
66 TCCTAATTAAAGG-AATGTGTTCTTGGTTCCCAATCTTAAAAAGAATAGAGACTATTATCAGAAT
* * *
1973812 CGATCCTGGTCATATTTAAAGGTTGAA-TTTTGATTTTAAGGAAAATAAGGCAATGAAAAGATTT
130 CGATCCTAGTCATATTTAAAGGATGAATTTTTGATTTTAAGGAAAATAAGGCAAAGAAAAGATTT
* * * * * *
1973876 -TCATCCAAAAGAAAATCGTCAATATCATTTTTCCTAATGACAAGAATTTGTTCATAG-GGCTTA
195 CT-ATCCAAAA-AAAATCATCAATATCATATATCCTAATAACAAGAATGTGTTCATAGTGCCTT-
* *
1973939 ATCACAAAAT-ATATGAAGTTCAATACTAGAATCCATGTTTGTCTC-ATTCGAGACACGAACATA
257 ATCACAAAATGA-ATGAAGATCAATACTAGAATCCATGTTTGCCTCAATT-GAGACACGAACATA
* * *
1974002 GACTTTACAAAAATTGGGGGGAAGAAAGCCTTTCTTGCAAAACCAAAG-CATTAATATCATCTAC
320 AACTTTACAAAAATTGGGAGGAAGAAAGCCTTTCTTGCAAAACCAAAGTC-TCAATATCATCTAC
* * * * *
1974066 CCTAACGAGATGACTATGTTTATAGTGCTTGATCCTAAAAAGAATGAGGATTA
384 CCTAACGAGAAGACTATCTTTATAGTGCCTAATCCGAAAAAGAATGAGGATTA
1974119 GTATTGTGAG
Statistics
Matches: 380, Mismatches: 46, Indels: 18
0.86 0.10 0.04
Matches are distributed among these distances:
474 1 0.00
475 51 0.13
476 222 0.58
477 98 0.26
478 8 0.02
ACGTcount: A:0.38, C:0.15, G:0.17, T:0.31
Consensus pattern (478 bp):
GATTCTATCAAAAAACGGTAGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATATAATGCA
TCCTAATTAAAGGAATGTGTTCTTGGTTCCCAATCTTAAAAAGAATAGAGACTATTATCAGAATC
GATCCTAGTCATATTTAAAGGATGAATTTTTGATTTTAAGGAAAATAAGGCAAAGAAAAGATTTC
TATCCAAAAAAAATCATCAATATCATATATCCTAATAACAAGAATGTGTTCATAGTGCCTTATCA
CAAAATGAATGAAGATCAATACTAGAATCCATGTTTGCCTCAATTGAGACACGAACATAAACTTT
ACAAAAATTGGGAGGAAGAAAGCCTTTCTTGCAAAACCAAAGTCTCAATATCATCTACCCTAACG
AGAAGACTATCTTTATAGTGCCTAATCCGAAAAAGAATGAGGATTACTATGACTATTCATGTTTG
TCTTATTTTAGAGAGCAAACTTT
Found at i:1974412 original size:34 final size:35
Alignment explanation
Indices: 1974374--1974440 Score: 102
Period size: 37 Copynumber: 1.9 Consensus size: 35
1974364 CCTTACAACA
1974374 CTATC-TTTC-AAGGCTAAGATAGAAACCTCTCTCT
1 CTATCTTTTCAAAGGCTAAGATAG-AACCTCTCTCT
1974408 CTATCTTTTTCAAAGGCTAAGATAGAACCTCTC
1 CTATC-TTTTCAAAGGCTAAGATAGAACCTCTC
1974441 AATCACTTAG
Statistics
Matches: 30, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
34 5 0.17
36 12 0.40
37 13 0.43
ACGTcount: A:0.30, C:0.25, G:0.12, T:0.33
Consensus pattern (35 bp):
CTATCTTTTCAAAGGCTAAGATAGAACCTCTCTCT
Found at i:1976615 original size:13 final size:13
Alignment explanation
Indices: 1976597--1976621 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
1976587 ACTGAAGCAA
1976597 TGTATCGATACAT
1 TGTATCGATACAT
1976610 TGTATCGATACA
1 TGTATCGATACA
1976622 ATCTGGAAAA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:1977251 original size:23 final size:24
Alignment explanation
Indices: 1977206--1977252 Score: 62
Period size: 23 Copynumber: 2.0 Consensus size: 24
1977196 CAAAGAATTG
*
1977206 AACACAAATTCAATTAAGCACAAA
1 AACACAAATTCAATTAAGAACAAA
1977230 AACAC-AATTCAATTGAA-AACAAA
1 AACACAAATTCAATT-AAGAACAAA
1977253 TTTTCAACAA
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
23 14 0.67
24 7 0.33
ACGTcount: A:0.60, C:0.19, G:0.04, T:0.17
Consensus pattern (24 bp):
AACACAAATTCAATTAAGAACAAA
Found at i:1979870 original size:34 final size:35
Alignment explanation
Indices: 1979832--1979898 Score: 102
Period size: 37 Copynumber: 1.9 Consensus size: 35
1979822 CCTTACAACA
1979832 CTATC-TTTC-AAGGCTAAGATAGAAACCTCTCTCT
1 CTATCTTTTCAAAGGCTAAGATAG-AACCTCTCTCT
1979866 CTATCTTTTTCAAAGGCTAAGATAGAACCTCTC
1 CTATC-TTTTCAAAGGCTAAGATAGAACCTCTC
1979899 AATCACTTAG
Statistics
Matches: 30, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
34 5 0.17
36 12 0.40
37 13 0.43
ACGTcount: A:0.30, C:0.25, G:0.12, T:0.33
Consensus pattern (35 bp):
CTATCTTTTCAAAGGCTAAGATAGAACCTCTCTCT
Found at i:1981769 original size:338 final size:338
Alignment explanation
Indices: 1981153--1982438 Score: 2031
Period size: 338 Copynumber: 3.8 Consensus size: 338
1981143 TTTGATTCTA
* * *
1981153 TCAAAAACGGTGGAAAGAAAAGCTTTTCTTGTGACACGAAAGCATCAATGTCATGTATCCTAATG
1 TCAAAAACGGTGGAAAGAAAAGCTTTGCTTGCGACACCAAAGCATCAATGTCATGTATCCTAATG
* * * *
1981218 AAGGAAATGTGTTCTTGGTTCCCAATCCTAAAAAGAATGGAGACTATTACGAGAATCGATCCTAG
66 AAAGAAATATGTTCTTGGTTCCCAATCCTGAAAAGAATGGAGACTATTATGAGAATCGATCCTAG
* * * *
1981283 TCATATTTAAGGGATAAATTTTGATTTTTAGGAAAATAGGTCAAAGAAAAGATTTTCATCCAAAA
131 TCATATTTAAGGGATGAATTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATCCAAAA
* * * *
1981348 AAAAATCATCAATATCATATATCCTAATAAGGAGAATGTATTCATAGTGCTTTACCACAAAATGA
196 AAAAATCATCAATATCATATATTCTAATAAGGAGAATGTGTTCATAGTGCCTTATCACAAAATGA
*
1981413 ATGAAGATCTTTACTAGAATCCATGTTTGTCTCAATTGTGGCACGAACTTAAACTTTACAAAAAT
261 ATGAACATCTTTACTAGAATCCATGTTTGTCTCAATTGTGGCACGAACTTAAACTTTACAAAAAT
1981478 TGGTAGGG-TTTTG
326 TGGT-GGGATTTTG
* *
1981491 TCAAAAACGATGGATAGAAAAGCTTCTGC-TGCGACACCAAAGCATCAATGTCATGTATCCTAAT
1 TCAAAAACGGTGGAAAGAAAAGCTT-TGCTTGCGACACCAAAGCATCAATGTCATGTATCCTAAT
* ** *
1981555 GAAAGAAATGTGTTCTTGGTTCCCAATCCTGAAAATCATGGAGACTATTATGAGAATCGATCTTA
65 GAAAGAAATATGTTCTTGGTTCCCAATCCTGAAAAGAATGGAGACTATTATGAGAATCGATCCTA
*
1981620 GTCATATTTAAGGGATGAATTTTGATTTTAAGGAAAATTGGGCAAAGAAAAGATTTCCATCCAAA
130 GTCATATTTAAGGGATGAATTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATCCAAA
*
1981685 AAAAAATCATCAATATCATATA-TCTTAGTAAGGAGAATGTGTTCATAGTGCCTTATCACAAAAT
195 AAAAAATCATCAATATCATATATTC-TAATAAGGAGAATGTGTTCATAGTGCCTTATCACAAAAT
* *
1981749 GAAAGAACATCTTTACTAGAATCCATGTTTGTCTCAATTGTGGCACGAACTTAAACTTTACCAAA
259 GAATGAACATCTTTACTAGAATCCATGTTTGTCTCAATTGTGGCACGAACTTAAACTTTACAAAA
* *
1981814 ATCGGTGGGATTTTA
324 ATTGGTGGGATTTTG
* * * *
1981829 TCAAAAACGGTGGAATGAAAAGCTTTTCTTGCGACACCAAAGCATTAGTGTCATGTATCCTAATG
1 TCAAAAACGGTGGAAAGAAAAGCTTTGCTTGCGACACCAAAGCATCAATGTCATGTATCCTAATG
* * *
1981894 AAAAAAATATGTTCTTGGTTCCCAATCCTAAAAAGATTGGAGACTATTATGAGAATCGATCCTAG
66 AAAGAAATATGTTCTTGGTTCCCAATCCTGAAAAGAATGGAGACTATTATGAGAATCGATCCTAG
1981959 TCATATTTAAGGGATGAATTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATCCAAAA
131 TCATATTTAAGGGATGAATTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATCCAAAA
* * * *
1982024 AAAAATCATCAATATCGTATATTCTAATAAGGAGAGTGTGTTCAGAGTGCCTTATCCCAAAATGA
196 AAAAATCATCAATATCATATATTCTAATAAGGAGAATGTGTTCATAGTGCCTTATCACAAAATGA
* * *
1982089 ATGAAGATCTTTACTAGAATCCATGTTTGTCTCAATTATGGCATGAACTTAAACTTTACAAAAAT
261 ATGAACATCTTTACTAGAATCCATGTTTGTCTCAATTGTGGCACGAACTTAAACTTTACAAAAAT
1982154 TGGTGGGATTTTG
326 TGGTGGGATTTTG
* * *
1982167 TCAAAAACGGTGGAAAGAAAACCTTTGGTTGCGACACCGAAGCATCAATGTCATGTATCCTAATG
1 TCAAAAACGGTGGAAAGAAAAGCTTTGCTTGCGACACCAAAGCATCAATGTCATGTATCCTAATG
* * *
1982232 AAAGAAATATGTTCTTGGTTCCCAATCCTGAAAAGAATGGAGATTGTTATAAGAATCGATCCTAG
66 AAAGAAATATGTTCTTGGTTCCCAATCCTGAAAAGAATGGAGACTATTATGAGAATCGATCCTAG
*
1982297 TCATATTTAAGGGATGAATTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCGTCCAAAA
131 TCATATTTAAGGGATGAATTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATCCAAAA
* * *
1982362 AAAAATCATCAATATCGTATATTCTAATAAGGAGAATGTGTTCATAGT-CTATTATCACAAAGTG
196 AAAAATCATCAATATCATATATTCTAATAAGGAGAATGTGTTCATAGTGC-CTTATCACAAAATG
*
1982426 AATGAACACCTTT
260 AATGAACATCTTT
1982439 CTTGCAAAAC
Statistics
Matches: 869, Mismatches: 73, Indels: 12
0.91 0.08 0.01
Matches are distributed among these distances:
337 7 0.01
338 858 0.99
339 4 0.00
ACGTcount: A:0.38, C:0.15, G:0.18, T:0.30
Consensus pattern (338 bp):
TCAAAAACGGTGGAAAGAAAAGCTTTGCTTGCGACACCAAAGCATCAATGTCATGTATCCTAATG
AAAGAAATATGTTCTTGGTTCCCAATCCTGAAAAGAATGGAGACTATTATGAGAATCGATCCTAG
TCATATTTAAGGGATGAATTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATCCAAAA
AAAAATCATCAATATCATATATTCTAATAAGGAGAATGTGTTCATAGTGCCTTATCACAAAATGA
ATGAACATCTTTACTAGAATCCATGTTTGTCTCAATTGTGGCACGAACTTAAACTTTACAAAAAT
TGGTGGGATTTTG
Found at i:1984496 original size:477 final size:475
Alignment explanation
Indices: 1982434--1984842 Score: 3140
Period size: 477 Copynumber: 5.1 Consensus size: 475
1982424 TGAATGAACA
* * * * *
1982434 CCTTTCTTGCAAAACCAAAGCCTCAATAACGTCTATCCTAACGAGAAGGCTATCTTTATGGTGCC
1 CCTTTCTTGCAAAACCAAAGCATCAATATCATCTATCCTAACGAGAAGACTATGTTTATGGTGCC
* * * * *
1982499 TAATCCGAAAAAGAATAAGGATTACTATGACTATTCATGTTTGTCTTATTTAAGAAAGTAAACTT
66 TAATGCGAAAAAGAAT-GGGATTAGTATGACTATTCATGTTTGTCTTATTTAAGAGAGCAAACTT
* * * * * *
1982564 TGATTCTATCGAAAATGATGGAAAGAAAAGCTTTTCCTGTGACACCAAGGCAAT-AATGTCATGT
130 TGATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGC-ATCAATGTCATGT
*
1982628 ATCCTAATGAAGGAAATGTGTTCTTGGTTCCCAATCCTGAAAAGAATGGAGACTATTATGAGAAT
194 ATCCTAATGAAGGGAATGTGTTCTTGGTTCCCAATCCTGAAAAGAATGGAGACTATTATGAGAAT
* * * *
1982693 CGATCCTGGTCATATTTAAGGGATGAATTTTGATTTCAAGAAAAATAAGGCAAAGAAAAGACTTC
259 CGATCCTGGTCATATTTAAGGGATGAATTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTC
* ** * *
1982758 CATCCAAAAAAAAATCGTCAATATCATTTATCCTAA-AGATAAGAATTTATTCATAGTGCCTAAT
324 CATCCAAAAAAAAATCATCAATATCATTTATCCTAATA-AGGAGAATGTGTTCATAGTGCCTAAT
* * * * * *
1982822 CACAAAATAAATGAAGTTCAATACTAGAATCAATGCTTGTCTC-ATTCGAGGCACGGACATAGAC
388 CACAAAATAAATGAAGATCAATACTAGAATCCATGTTTGTCTCAATT-GAGGCACGAACTTACAC
* *
1982886 TGTACAAAAATTGGTAGGAAGAAGG
452 TTTACAAAAATTGGT-GGAAGAAAG
* * * ** * *
1982911 CCTTTCTTGCGAAACCAAAGCATTAATATCATCTACCCTAATAAGATGACTATGTTTGTGGTGCC
1 CCTTTCTTGCAAAACCAAAGCATCAATATCATCTATCCTAACGAGAAGACTATGTTTATGGTGCC
* * * *
1982976 TAATGCTAAGAGGAATGGAGATTAGTATGACAATTCATGTTTGTCTTATTTAAGAGAGCAAACTT
66 TAATGCGAAAAAGAATGG-GATTAGTATGACTATTCATGTTTGTCTTATTTAAGAGAGCAAACTT
* * *
1983041 TGATTTTATCAAAAAAGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAA-GTCATATA
130 TGATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTA
* * * * * * **
1983105 TCGTAATGAAGGGGATGTGTTCTTGGTTCCCAATCTTGAAAATAATGGAAACTGTTGCGAGAATC
195 TCCTAATGAAGGGAATGTGTTCTTGGTTCCCAATCCTGAAAAGAATGGAGACTATTATGAGAATC
** * * * *
1983170 GATGGTTGTCATATTTAAGGGACGAATTTTGATTTTAAGGAAAATAGGACAAAGAAAAGATTTCT
260 GATCCTGGTCATATTTAAGGGATGAATTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCC
* * * ** * * *
1983235 ATGCAAAAGAAAGTCATCAATATCATTTATCCTGGTGAGGAGAATGTGTTTATAGTGCCTAACCA
325 ATCCAAAAAAAAATCATCAATATCATTTATCCTAATAAGGAGAATGTGTTCATAGTGCCTAATCA
* * * * *
1983300 CAAAATGAATGAAAACCATTACTAGAATTCATGTTTGTCTCAATTGTAGG-ACGAACTTACACTT
390 CAAAATAAATGAAGATCAATACTAGAATCCATGTTTGTCTCAATTG-AGGCACGAACTTACACTT
1983364 TACAAAAATTGGTGGGAAGAAAG
454 TACAAAAATTGGT-GGAAGAAAG
* * * * *
1983387 CCTTTCTTGCGAAACCAAGGCTTTAATATCATCTATCCTAACGAGAAGACTATGTTTTTGGTGCC
1 CCTTTCTTGCAAAACCAAAGCATCAATATCATCTATCCTAACGAGAAGACTATGTTTATGGTGCC
* * * * * * *
1983452 TAA-ACGTGAAAAGAAGGGGATTAGTATTACTATTCTTGTTTATCTTATTTAAAAG-GCAAACTT
66 TAATGCG-AAAAAGAATGGGATTAGTATGACTATTCATGTTTGTCTTATTTAAGAGAGCAAACTT
* * *
1983515 TGATTCTATCAAAAACGGTGGAAAGAATAGCTTTACTTGCGACACCAAAGCATCAATGTCATGCA
130 TGATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTA
* * *
1983580 TCCTAATGAAGGGAATATGTTCTTGGGTCCCAATCTTGAAAAGAATGGAGACTATTATGAGAATC
195 TCCTAATGAAGGGAATGTGTTCTTGGTTCCCAATCCTGAAAAGAATGGAGACTATTATGAGAATC
*
1983645 GATCCTGGGCATATTTAAGGGATGAATTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCC
260 GATCCTGGTCATATTTAAGGGATGAATTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCC
* * * * *
1983710 ATTC-AAAAAAAATCATCAATAACATTTATCCTAATGAGGAAAATGTGTTCATAGTGCCTAATCG
325 ATCCAAAAAAAAATCATCAATATCATTTATCCTAATAAGGAGAATGTGTTCATAGTGCCTAATCA
* * *
1983774 CAAAATAAATGAAGATCAATACTAGAATCCATGTTTGACTCATTTGAGGCACGAACTTACATTTT
390 CAAAATAAATGAAGATCAATACTAGAATCCATGTTTGTCTCAATTGAGGCACGAACTTACACTTT
*
1983839 ACAAAAGTTGGGTGGAAGAAAG
455 ACAAAAATT-GGTGGAAGAAAG
* *
1983861 CCTTTCTTGCAAAACCAAAGCATCAATATCATCTATCCTAATGAAAAGACTATGTTTATGGTGCC
1 CCTTTCTTGCAAAACCAAAGCATCAATATCATCTATCCTAACGAGAAGACTATGTTTATGGTGCC
* * * *
1983926 TAA--CTAGAAAAGAATGAAGATTAGTATGACTATTCGTGTTTGTCTTATTTAAGACAGCAAACT
66 TAATGCGA-AAAAGAATG-GGATTAGTATGACTATTCATGTTTGTCTTATTTAAGAGAGCAAACT
*
1983989 TTGATTTTATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGT
129 TTGATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGT
* * * *
1984054 ATCGTAATGAAAGAAATGTGTTCTTGGTTCCCAATCCTGAAAAGAATAGAGACTATTATGAGAAT
194 ATCCTAATGAAGGGAATGTGTTCTTGGTTCCCAATCCTGAAAAGAATGGAGACTATTATGAGAAT
* * * * * *
1984119 CAATCCTAGTCGTATTTAAGGGATG-ATTTTGATTTTGAGGAAAATGGGGCAAAGAAAATATTTC
259 CGATCCTGGTCATATTTAAGGGATGAATTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTC
* * * *
1984183 CATCCAAAAAACAAATCATCAATATCATATATTCTAATAAGGAGAATGTGTTCTTAGTGCCTTAT
324 CATCCAAAAAA-AAATCATCAATATCATTTATCCTAATAAGGAGAATGTGTTCATAGTGCCTAAT
* * * * *
1984248 CACAAAATGATTGAAGATC-TTCACTACAATCCATGTTTGTCTCAATT-ATGGCACGAACTTAAA
388 CACAAAATAAATGAAGATCAAT-ACTAGAATCCATGTTTGTCTCAATTGA-GGCACGAACTTACA
*
1984311 CTTTACAAAAATTAGTGGAAAGAAAG
451 CTTTACAAAAATTGGTGG-AAGAAAG
* * *
1984337 CCTTTCTTGCAAAAACCAAAGCCTCAATATCATCTATCCTAACGAGAAGGCTATCTTTATGGTGC
1 CCTTTCTTGC-AAAACCAAAGCATCAATATCATCTATCCTAACGAGAAGACTATGTTTATGGTGC
* * *
1984402 CTAATGCGAAAAAGAATGGGATTACTATGACTATTCATGTTTGTCTTATTTAATAGAGAAAACTT
65 CTAATGCGAAAAAGAATGGGATTAGTATGACTATTCATGTTTGTCTTATTTAAGAGAGCAAACTT
* * * * *
1984467 TGATTCTATCGAAAACGATGGAAAGAAAAGCTTTTCTTGTGACACGAAAGCAAT-AATATCATGT
130 TGATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGC-ATCAATGTCATGT
1984531 ATCCTAATGAAGGGAATGTGTTCTTGGTTCCCAATCCTGAAAAGAATGGAGACTATTATGAGAAT
194 ATCCTAATGAAGGGAATGTGTTCTTGGTTCCCAATCCTGAAAAGAATGGAGACTATTATGAGAAT
*
1984596 CGATCCTGGTCATATTTAAGGGATGAATTTTGATTTTAAGGAAAATAAGGCAAAGAAAAGATTTC
259 CGATCCTGGTCATATTTAAGGGATGAATTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTC
* ** * *
1984661 CATCCAAAAAAAAATCGTCAATATCATTTATCCTAA-AGATAAGAATTTCTTCATAGTGCCTAAT
324 CATCCAAAAAAAAATCATCAATATCATTTATCCTAATA-AGGAGAATGTGTTCATAGTGCCTAAT
* * *
1984725 CACAAAATAAATGAAGTTCAATACTAGAATCCATGTTTGTCTC-ATTCGAGGCACGAACATAGAC
388 CACAAAATAAATGAAGATCAATACTAGAATCCATGTTTGTCTCAATT-GAGGCACGAACTTACAC
*
1984789 TTTACAAAAATTGGCGGTAAGAAAG
452 TTTACAAAAATTGGTGG-AAGAAAG
* *
1984814 CCTTTCTTGCGAAACCAAAGCATTAATAT
1 CCTTTCTTGCAAAACCAAAGCATCAATAT
1984843 TGTTAGGATC
Statistics
Matches: 1668, Mismatches: 238, Indels: 53
0.85 0.12 0.03
Matches are distributed among these distances:
473 12 0.01
474 314 0.19
475 317 0.19
476 450 0.27
477 514 0.31
478 59 0.04
479 2 0.00
ACGTcount: A:0.37, C:0.15, G:0.18, T:0.30
Consensus pattern (475 bp):
CCTTTCTTGCAAAACCAAAGCATCAATATCATCTATCCTAACGAGAAGACTATGTTTATGGTGCC
TAATGCGAAAAAGAATGGGATTAGTATGACTATTCATGTTTGTCTTATTTAAGAGAGCAAACTTT
GATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTAT
CCTAATGAAGGGAATGTGTTCTTGGTTCCCAATCCTGAAAAGAATGGAGACTATTATGAGAATCG
ATCCTGGTCATATTTAAGGGATGAATTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCA
TCCAAAAAAAAATCATCAATATCATTTATCCTAATAAGGAGAATGTGTTCATAGTGCCTAATCAC
AAAATAAATGAAGATCAATACTAGAATCCATGTTTGTCTCAATTGAGGCACGAACTTACACTTTA
CAAAAATTGGTGGAAGAAAG
Found at i:1985157 original size:20 final size:20
Alignment explanation
Indices: 1985134--1985209 Score: 80
Period size: 20 Copynumber: 3.6 Consensus size: 20
1985124 ACAATTCAAA
1985134 GTATCGATACATGTTGCAAT
1 GTATCGATACATGTTGCAAT
****
1985154 GTATCGATACATGAAAAAAAAAAT
1 GTATCGATACATG----TTGCAAT
1985178 GTATCGATACATGTTGCAAT
1 GTATCGATACATGTTGCAAT
1985198 GTATCGATACAT
1 GTATCGATACAT
1985210 AAAAAGGATG
Statistics
Matches: 44, Mismatches: 8, Indels: 8
0.73 0.13 0.13
Matches are distributed among these distances:
20 28 0.64
24 16 0.36
ACGTcount: A:0.39, C:0.13, G:0.17, T:0.30
Consensus pattern (20 bp):
GTATCGATACATGTTGCAAT
Found at i:1985188 original size:44 final size:41
Alignment explanation
Indices: 1985134--1985230 Score: 149
Period size: 44 Copynumber: 2.3 Consensus size: 41
1985124 ACAATTCAAA
1985134 GTATCGATACATGTTGCAATGTATCGATACATGAAAAAAAAAAT
1 GTATCGATACATGTTGCAATGTATCGATACAT---AAAAAAAAT
**
1985178 GTATCGATACATGTTGCAATGTATCGATACATAAAAAGGAT
1 GTATCGATACATGTTGCAATGTATCGATACATAAAAAAAAT
1985219 GTATCGATACAT
1 GTATCGATACAT
1985231 TTCTTGGCAG
Statistics
Matches: 51, Mismatches: 2, Indels: 3
0.91 0.04 0.05
Matches are distributed among these distances:
41 19 0.37
44 32 0.63
ACGTcount: A:0.41, C:0.12, G:0.18, T:0.29
Consensus pattern (41 bp):
GTATCGATACATGTTGCAATGTATCGATACATAAAAAAAAT
Found at i:1985287 original size:13 final size:13
Alignment explanation
Indices: 1985269--1985294 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
1985259 TACAGAAAGT
1985269 ATGTATCGATACA
1 ATGTATCGATACA
1985282 ATGTATCGATACA
1 ATGTATCGATACA
1985295 CAAAAAATTG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:1985292 original size:32 final size:33
Alignment explanation
Indices: 1985251--1985314 Score: 94
Period size: 32 Copynumber: 2.0 Consensus size: 33
1985241 TAGCCAAACT
* **
1985251 TGTATCGATACAGAAAGTA-TGTATCGATACAA
1 TGTATCGATACACAAAAAATTGTATCGATACAA
1985283 TGTATCGATACACAAAAAATTGTATCGATACA
1 TGTATCGATACACAAAAAATTGTATCGATACA
1985315 TTGGCTTGTA
Statistics
Matches: 28, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
32 16 0.57
33 12 0.43
ACGTcount: A:0.42, C:0.14, G:0.16, T:0.28
Consensus pattern (33 bp):
TGTATCGATACACAAAAAATTGTATCGATACAA
Found at i:1989376 original size:15 final size:15
Alignment explanation
Indices: 1989356--1989386 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
1989346 TAAAAATGTC
*
1989356 CAAAATGAGGAAGCT
1 CAAAATGAAGAAGCT
1989371 CAAAATGAAGAAGCT
1 CAAAATGAAGAAGCT
1989386 C
1 C
1989387 CAAACGAAAT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.48, C:0.16, G:0.23, T:0.13
Consensus pattern (15 bp):
CAAAATGAAGAAGCT
Found at i:1991437 original size:20 final size:20
Alignment explanation
Indices: 1991412--1991508 Score: 106
Period size: 20 Copynumber: 4.6 Consensus size: 20
1991402 ATGTCCAAAA
*
1991412 TGTATCGATACATGTTTT-TG
1 TGTATCGATACAT-TTTTCTT
* *
1991432 TGTATCGATACATCTGGAAATTCTA
1 TGTATCGATACAT-T----TTTCTT
1991457 TGTATCGATACATTTTTCTT
1 TGTATCGATACATTTTTCTT
1991477 TGTATCGATACATTTTTCTT
1 TGTATCGATACATTTTTCTT
1991497 TGTATCGATACA
1 TGTATCGATACA
1991509 CTGTATCGAT
Statistics
Matches: 67, Mismatches: 5, Indels: 10
0.82 0.06 0.12
Matches are distributed among these distances:
20 50 0.75
24 3 0.04
25 14 0.21
ACGTcount: A:0.25, C:0.14, G:0.14, T:0.46
Consensus pattern (20 bp):
TGTATCGATACATTTTTCTT
Found at i:1991515 original size:13 final size:13
Alignment explanation
Indices: 1991497--1991521 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
1991487 CATTTTTCTT
1991497 TGTATCGATACAC
1 TGTATCGATACAC
1991510 TGTATCGATACA
1 TGTATCGATACA
1991522 GGGTGATTAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.20, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAC
Found at i:1993416 original size:48 final size:48
Alignment explanation
Indices: 1993362--1993457 Score: 183
Period size: 48 Copynumber: 2.0 Consensus size: 48
1993352 GGGGAGATAA
1993362 AGGAGAGAATGCATGAATTACCTTATTAAGGGGGAGAATGTACAAATT
1 AGGAGAGAATGCATGAATTACCTTATTAAGGGGGAGAATGTACAAATT
*
1993410 AGGAGAGAATGCGTGAATTACCTTATTAAGGGGGAGAATGTACAAATT
1 AGGAGAGAATGCATGAATTACCTTATTAAGGGGGAGAATGTACAAATT
1993458 CGTAAAATTT
Statistics
Matches: 47, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
48 47 1.00
ACGTcount: A:0.39, C:0.08, G:0.28, T:0.25
Consensus pattern (48 bp):
AGGAGAGAATGCATGAATTACCTTATTAAGGGGGAGAATGTACAAATT
Found at i:1994031 original size:20 final size:20
Alignment explanation
Indices: 1994008--1994081 Score: 94
Period size: 20 Copynumber: 3.6 Consensus size: 20
1993998 ACAATTCAAA
1994008 GTATCGATACATGTTGCAAT
1 GTATCGATACATGTTGCAAT
****
1994028 GTATCGATACATGAAAAAAAAT
1 GTATCGATACATG--TTGCAAT
1994050 GTATCGATACATGTTGCAAT
1 GTATCGATACATGTTGCAAT
1994070 GTATCGATACAT
1 GTATCGATACAT
1994082 AAAAAGGATG
Statistics
Matches: 44, Mismatches: 8, Indels: 4
0.79 0.14 0.07
Matches are distributed among these distances:
20 28 0.64
22 16 0.36
ACGTcount: A:0.38, C:0.14, G:0.18, T:0.31
Consensus pattern (20 bp):
GTATCGATACATGTTGCAAT
Found at i:1994098 original size:41 final size:42
Alignment explanation
Indices: 1994008--1994102 Score: 165
Period size: 42 Copynumber: 2.3 Consensus size: 42
1993998 ACAATTCAAA
1994008 GTATCGATACATGTTGCAATGTATCGATACATGAAAAAAAAT
1 GTATCGATACATGTTGCAATGTATCGATACATGAAAAAAAAT
**
1994050 GTATCGATACATGTTGCAATGTATCGATACAT-AAAAAGGAT
1 GTATCGATACATGTTGCAATGTATCGATACATGAAAAAAAAT
1994091 GTATCGATACAT
1 GTATCGATACAT
1994103 TTCTTGGCAG
Statistics
Matches: 51, Mismatches: 2, Indels: 1
0.94 0.04 0.02
Matches are distributed among these distances:
41 19 0.37
42 32 0.63
ACGTcount: A:0.40, C:0.13, G:0.18, T:0.29
Consensus pattern (42 bp):
GTATCGATACATGTTGCAATGTATCGATACATGAAAAAAAAT
Found at i:1994159 original size:13 final size:13
Alignment explanation
Indices: 1994141--1994166 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
1994131 TACAGAAAGT
1994141 ATGTATCGATACA
1 ATGTATCGATACA
1994154 ATGTATCGATACA
1 ATGTATCGATACA
1994167 CAAAAAATTG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:1994164 original size:32 final size:33
Alignment explanation
Indices: 1994123--1994186 Score: 94
Period size: 32 Copynumber: 2.0 Consensus size: 33
1994113 TAGCCAAACT
* **
1994123 TGTATCGATACAGAAAGTA-TGTATCGATACAA
1 TGTATCGATACACAAAAAATTGTATCGATACAA
1994155 TGTATCGATACACAAAAAATTGTATCGATACA
1 TGTATCGATACACAAAAAATTGTATCGATACA
1994187 TTGGCTTGTA
Statistics
Matches: 28, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
32 16 0.57
33 12 0.43
ACGTcount: A:0.42, C:0.14, G:0.16, T:0.28
Consensus pattern (33 bp):
TGTATCGATACACAAAAAATTGTATCGATACAA
Found at i:1996567 original size:477 final size:477
Alignment explanation
Indices: 1995445--1998705 Score: 4104
Period size: 477 Copynumber: 6.9 Consensus size: 477
1995435 TCCAGAAAAG
* * * * *
1995445 AACGGTGGAAAGAAAAGCTTTTCTTACGACACCATAGCGTTAATGTCATGTATCCTAATGAAGAA
1 AACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAATGAAGGA
* * * *
1995510 AATGGGTTC-TGAGTTCCCAATCCT-AGAAAGAATGGAGACTATTATGTGAATTGATCCTGGTCG
66 AATGTGTTCTTG-GTTCCCAATCCTGA-AAAGAATGGAGACTATTATGAGAATCGATCCTGGTCA
* * * * *
1995573 TATTTAATGGATAAATTTTGATTTTTAGCAAAATAGGGCAAAGAAAAGATTTCCATCCAAAAACA
129 TATTTAAGGGATGAATTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATCCAAAAAAA
* *
1995638 AATCATCAATATCATTTATCCTAACGAGGAGAATGTGTTCATAGTGCCTAATCCCAAAATAAATG
194 AATCATCAATATCATTTATCCTAAAGAGGAGAATGTGTTCATAGTGCCTAATCACAAAATAAATG
* ** * *
1995703 AAGATCAATACTAGAATCCATGTTTAACTCATTTGAGGCACGAATTTACCCTTTACAAAAATT--
259 AAGATCAATACTAGAATCAATGTTTGTCTCATTTGAGGCACGAACTTACACTTTACAAAAATTGG
* * * * * * *
1995766 AGAG-AGAAAGCTTTTCTTGCAAAACCAAAGCATCAATATCATCTATTCTAATGTGAAGA-TAAC
324 TGGGAAGAAAGCCTTTCTTGCGAAACCAAAGCATCAATATCATCTATCCTAATGAGAAGACT-AT
* *
1995829 GTTTATGGTGCCTAATCCTAAAAAGAATGAAGATTAGTATGACTATTCTTGTTTGTCTTATTTAA
388 GTTTATGGTGCCTAATCCTAAAAAGAATGGAGATTAGTATGACTATTCATGTTTGTCTTATTTAA
* *
1995894 GAGAGGAAACTTTGATTTTATCAAA
453 GAGAGCAAACTTTGATTCTATCAAA
* * * *
1995919 AACGGTGG-AAGAAAAGCTTTTATTGCAACACCAAAGCATCAATGTCAGGTA-CCGTAATGAAAG
1 AACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCC-TAATGAAGG
*
1995982 AAATGTGTTCTTGGTTCCCAATCCTGAAAAGAATGGAGACTATTATGAGAATCGATCCTAGTCAT
65 AAATGTGTTCTTGGTTCCCAATCCTGAAAAGAATGGAGACTATTATGAGAATCGATCCTGGTCAT
*
1996047 ATTTAAAGGATGAATTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATCCAAAAAAAA
130 ATTTAAGGGATGAATTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATCCAAAAAAAA
* ** * *
1996112 ATCGTCAATATCATTTATCCTAAAGATAAGAATTTATTCATAGTGCCTAATCACAAAATAAATGA
195 ATCATCAATATCATTTATCCTAAAGAGGAGAATGTGTTCATAGTGCCTAATCACAAAATAAATGA
* * * * * * *
1996177 AGTTCAATACTAGAATCAATGCTTGTCTCATTCGAGGCACGGACATAGACTGTACAAAAATTGGT
260 AGATCAATACTAGAATCAATGTTTGTCTCATTTGAGGCACGAACTTACACTTTACAAAAATTGGT
* * * * * *
1996242 AGGAAGAAGGCCTTTCTTGCGAAACCAAAGCATTAATATCATCTACCCTAATAAGATGACTATGT
325 GGGAAGAAAGCCTTTCTTGCGAAACCAAAGCATCAATATCATCTATCCTAATGAGAAGACTATGT
* * * * *
1996307 TTGTGGTGCCTAATGCTAAGAGGAATGGAGATTAGTATGACAATTCATGTTTGTCTTATTTAAGA
390 TTATGGTGCCTAATCCTAAAAAGAATGGAGATTAGTATGACTATTCATGTTTGTCTTATTTAAGA
*
1996372 GAGCAAACTTTGATTTTATCAAA
455 GAGCAAACTTTGATTCTATCAAA
* * *
1996395 AAAGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATATATCCTAATGAAGGG
1 AACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAATGAAGGA
* * * * * * ** *
1996460 GATGTGTTCTTGGTTCCCAATCTTGAAAATAATGGAAACTGTTGTGAGAATCGATGGTTGTCATA
66 AATGTGTTCTTGGTTCCCAATCCTGAAAAGAATGGAGACTATTATGAGAATCGATCCTGGTCATA
* * * * * *
1996525 TTTAAGGGATGAATTTTTATTTTAAGGAAAATAGGACAAAGAAAAGATTTCTATGCAAAAGAAAG
131 TTTAAGGGATGAATTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATCCAAAAAAAAA
*** * * *
1996590 TCATCAATATCATTTATCCTGGTGAGGAGAATGTGTTTATAGTGCCTAACCACAAAATGAATGAA
196 TCATCAATATCATTTATCCTAAAGAGGAGAATGTGTTCATAGTGCCTAATCACAAAATAAATGAA
* * * *
1996655 AACCATTACTAGAATTC-ATGTTTGTCTCAATTGTAGG-ACGAACTTACACTTTACAAAAATTGG
261 GATCAATACTAGAA-TCAATGTTTGTCTCATTTG-AGGCACGAACTTACACTTTACAAAAATTGG
* * * * *
1996718 TGGGAAGAAAGCCTTTCTTGCGAAACCAAGGCTTTAATATCGTCTATCCTAACGAGAAGACTATG
324 TGGGAAGAAAGCCTTTCTTGCGAAACCAAAGCATCAATATCATCTATCCTAATGAGAAGACTATG
* * * * * * * * *
1996783 TTTTTGGTGCCTAAACGTGAAAAGAA-GGGGATTAGTATTACTATTCTTGTTTATCTTATTTAAA
389 TTTATGGTGCCTAATCCTAAAAAGAATGGAGATTAGTATGACTATTCATGTTTGTCTTATTTAAG
1996847 AG-GCAAACTTTGATTCTATCAAA
454 AGAGCAAACTTTGATTCTATCAAA
* * * * *
1996870 AATGGTGGAAAGAATAGCTTTACTTGCGACACCAAAGCATCAATGTCATGCATCCTAATGAAGGG
1 AACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAATGAAGGA
* * * * * *
1996935 AATATGTTCTTGGGTCCCAATCTTGAAAAGAATGGAGACTAGTATGAGAATCAATCCTGGACATA
66 AATGTGTTCTTGGTTCCCAATCCTGAAAAGAATGGAGACTATTATGAGAATCGATCCTGGTCATA
** **
1997000 TTTAAGGGATGAATTTTGATTTTAAATAAAATAGGGCAAAGAAAAGATTTCCAT-TTAAAAAAAA
131 TTTAAGGGATGAATTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATCCAAAAAAAAA
* * *
1997064 TCATCAATAACATTTATCCTAATGAGGAGAATGTGTTCATAGTGCCTAATCGCAAAATAAATGAA
196 TCATCAATATCATTTATCCTAAAGAGGAGAATGTGTTCATAGTGCCTAATCACAAAATAAATGAA
* * *
1997129 GATCAATACTAGAATCAATGTTTGACTCATTTGAGGCACGAACTTACATTTTACAAAAGTTGG-G
261 GATCAATACTAGAATCAATGTTTGTCTCATTTGAGGCACGAACTTACACTTTACAAAAATTGGTG
* *
1997193 TGGAAGAAAGCCTTTCTTGCAAAACCAAAGCATCAATATCATCTATCCTAATGAGAAGACTACGT
326 -GGAAGAAAGCCTTTCTTGCGAAACCAAAGCATCAATATCATCTATCCTAATGAGAAGACTATGT
* *
1997258 TTATGGTGCCTAA--CTAGAAAAGAATGAAGATTAGTATGACTATTCCTGTTTGTCTTATTTAAG
390 TTATGGTGCCTAATCCTA-AAAAGAATGGAGATTAGTATGACTATTCATGTTTGTCTTATTTAAG
* *
1997321 ACAGCAAACTTTGATTTTATCAAA
454 AGAGCAAACTTTGATTCTATCAAA
* *
1997345 AACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCGTAATGAAAGA
1 AACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAATGAAGGA
* * * *
1997410 AATGTGTTCTTGGTTCCCAATCCTGAAAAGAATAGAGACTATTATGAGAATCAATCCTAGTCGTA
66 AATGTGTTCTTGGTTCCCAATCCTGAAAAGAATGGAGACTATTATGAGAATCGATCCTGGTCATA
* * *
1997475 TTTAAGGGATG-ATTTTGATTTTGAGGAAAATGGGGCAAAGAAAATATTTCCATCC-AAAAAAAA
131 TTTAAGGGATGAATTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATCCAAAAAAAAA
* * * * * * *
1997538 TCATCAATATCATATATTCTAATAG-GGAGAATGTGTTCTTAGTACCTTATCACAAAATGATTGA
196 TCATCAATATCATTTATCCTAA-AGAGGAGAATGTGTTCATAGTGCCTAATCACAAAATAAATGA
** * * * * *
1997602 AGATCTTTACTACAATCCATGTTTGTCTCAATT-ATGGCACGAACTTAAACTTTACAAAAATTAG
260 AGATCAATACTAGAATCAATGTTTGTCTCATTTGA-GGCACGAACTTACACTTTACAAAAATTGG
* * * *
1997666 TGGAAAGAAAGCCTTTCTTGC-AAAGCCAAAGCCTCAATATCATCTATCCTAACGAGAAGGCTAT
324 TGGGAAGAAAGCCTTTCTTGCGAAA-CCAAAGCATCAATATCATCTATCCTAATGAGAAGACTAT
* * * *
1997730 CTTTATGGTGCCTAATGC----GAGAATGG-GATTACTATGACTATTCATGTTTGTCTTATTTAA
388 GTTTATGGTGCCTAATCCTAAAAAGAATGGAGATTAGTATGACTATTCATGTTTGTCTTATTTAA
* * *
1997790 TAGAGAAAACTTTGATTCTATCGAA
453 GAGAGCAAACTTTGATTCTATCAAA
* * * *
1997815 AATGATGGAAAGAAAAGCTTTTCTTGTGACACGAAAGCAAT-AATGTCATGTATCCTAATGAAGG
1 AACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGC-ATCAATGTCATGTATCCTAATGAAGG
* *
1997879 GAATGTGTTCGTGGTTCCCAATCCTGAAAAGAATGGAGACTATTATGAGAATCGATCCTGGTCAT
65 AAATGTGTTCTTGGTTCCCAATCCTGAAAAGAATGGAGACTATTATGAGAATCGATCCTGGTCAT
*
1997944 ATTTAAGGGATGAATTTTGATTTTAAGGAAAATAAGGCAAAGAAAAGATTTCCATCCAAAAAAAA
130 ATTTAAGGGATGAATTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATCCAAAAAAAA
** * *
1998009 ATCATCAATATCATTTATCCTAAAGATAAGAATTTCTTCATAGTGCCTAATCACAAAATAAATGA
195 ATCATCAATATCATTTATCCTAAAGAGGAGAATGTGTTCATAGTGCCTAATCACAAAATAAATGA
* * * * *
1998074 AGTTCAATACTAGAATCCATGTTTGTCTCATTCGAGGCACGAACATAGACTTTACAAAAATTGGT
260 AGATCAATACTAGAATCAATGTTTGTCTCATTTGAGGCACGAACTTACACTTTACAAAAATTGGT
* * *
1998139 GGGAAGAAAGCCTTTCTTGCGAAACCAAAGCATTAATATCATCTA-CACTAATGAGATGACTACG
325 GGGAAGAAAGCCTTTCTTGCGAAACCAAAGCATCAATATCATCTATC-CTAATGAGAAGACTATG
* * * *
1998203 TTTGTGGCGCCTGATCCTAAAAAGAATAGG-GATTAGTATGACTATTCATGTTTGCCTTATTTAA
389 TTTATGGTGCCTAATCCTAAAAAGAAT-GGAGATTAGTATGACTATTCATGTTTGTCTTATTTAA
1998267 -AGGAGCAAACTTTGATTCTATCAAA
453 GA-GAGCAAACTTTGATTCTATCAAA
** * * * * *
1998292 AACGGCAGAAAGAAAAGCTTTTCTTGCAACACCAAAGCGTTAGTGTCATGTATCTTAATGAAGGA
1 AACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAATGAAGGA
* * * * ** * * * *
1998357 AATGTGTTCTTGGTTTCCAATCTTGAAAAGAATAGAGACTTTTGCGAGAATCAATGCTTGTGATA
66 AATGTGTTCTTGGTTCCCAATCCTGAAAAGAATGGAGACTATTATGAGAATCGATCCTGGTCATA
* * * * * *
1998422 TTTAAGAGAAGAATTTTGATTTTAAGGAAAATA-GGAAGAAGAAAATATTTCCATGCAAAAGAAA
131 TTTAAGGGATGAATTTTGATTTTAAGGAAAATAGGGCA-AAGAAAAGATTTCCATCCAAAAAAAA
* * * * *
1998486 GTCATCAATATCATTTATCCTAATGAGGAGAATGCGTTTATAGTGCCTTATCACAAAA-AGAATG
195 ATCATCAATATCATTTATCCTAAAGAGGAGAATGTGTTCATAGTGCCTAATCACAAAATA-AATG
* * * * *
1998550 AAGATCATTACTAGAATCAATGTTTGTCTTATTTGTGGCATGAACTTAAACTTTACAAAAATTGG
259 AAGATCAATACTAGAATCAATGTTTGTCTCATTTGAGGCACGAACTTACACTTTACAAAAATTGG
* * *
1998615 TGGGAAGAAAGCCTTTCTTGCGAAACCAAAGCATCAATATCGTCTATCCTAATGAGAAGACTCTC
324 TGGGAAGAAAGCCTTTCTTGCGAAACCAAAGCATCAATATCATCTATCCTAATGAGAAGACTATG
*
1998680 TTCATGGTGCCTAATCC-AGAAAAGAA
389 TTTATGGTGCCTAATCCTA-AAAAGAA
1998706 CGGTGGAAAG
Statistics
Matches: 2394, Mismatches: 351, Indels: 81
0.85 0.12 0.03
Matches are distributed among these distances:
470 178 0.07
471 51 0.02
472 178 0.07
473 287 0.12
474 442 0.18
475 330 0.14
476 183 0.08
477 737 0.31
478 8 0.00
ACGTcount: A:0.37, C:0.15, G:0.18, T:0.30
Consensus pattern (477 bp):
AACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAATGAAGGA
AATGTGTTCTTGGTTCCCAATCCTGAAAAGAATGGAGACTATTATGAGAATCGATCCTGGTCATA
TTTAAGGGATGAATTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATCCAAAAAAAAA
TCATCAATATCATTTATCCTAAAGAGGAGAATGTGTTCATAGTGCCTAATCACAAAATAAATGAA
GATCAATACTAGAATCAATGTTTGTCTCATTTGAGGCACGAACTTACACTTTACAAAAATTGGTG
GGAAGAAAGCCTTTCTTGCGAAACCAAAGCATCAATATCATCTATCCTAATGAGAAGACTATGTT
TATGGTGCCTAATCCTAAAAAGAATGGAGATTAGTATGACTATTCATGTTTGTCTTATTTAAGAG
AGCAAACTTTGATTCTATCAAA
Found at i:1999914 original size:47 final size:47
Alignment explanation
Indices: 1999843--1999938 Score: 165
Period size: 47 Copynumber: 2.0 Consensus size: 47
1999833 TTGGTGCGAA
*
1999843 GAAAGCCTTTCTTGCGAAACCAAAACATTAATGTCGTCTATCCTAAC
1 GAAAGCCTTTCTTGCGAAACCAAAACATTAATGTCATCTATCCTAAC
* *
1999890 GAAAGCCTTTCTTGTGAAATCAAAACATTAATGTCATCTATCCTAAC
1 GAAAGCCTTTCTTGCGAAACCAAAACATTAATGTCATCTATCCTAAC
1999937 GA
1 GA
1999939 GATGACTACG
Statistics
Matches: 46, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
47 46 1.00
ACGTcount: A:0.35, C:0.23, G:0.12, T:0.29
Consensus pattern (47 bp):
GAAAGCCTTTCTTGCGAAACCAAAACATTAATGTCATCTATCCTAAC
Found at i:2003230 original size:476 final size:475
Alignment explanation
Indices: 1999890--2009042 Score: 9379
Period size: 476 Copynumber: 19.2 Consensus size: 475
1999880 CTATCCTAAC
* * * * * * * *
1999890 GAAAGCCTTTCTTGTGAAATCAAAACATTAATGTCATCTATCCTAACGAGATGACTACGTTTATG
1 GAAAGCCTTTCTTGTGAAACCAAAGCATCAATATCGTCTATCCTAATGAGAAGACTATGTTTATG
* * * *
1999955 GTGCCTAATCCT-AAGAGGAATGGGGATTAGTATGACTATTCATGTTTGTCATATTTAAGAGAGC
66 GTGCCTAATCCTGAA-A-AAAAGGGGATTAGTATGACTATTCATGTTTGTCTTATTAAAGAGA-C
* * * * *
2000019 AAACTTTGCTTTTATCCAAAATGGTGGAAAGAAAAGCTTTTCTTCCGACCCCAAAGCATTAATGT
128 AAACTTTGATTTTATCAAAAATGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGT
* * * * *
2000084 CTTGTATCCTAATGAAGGAAATGTGTTCTTGGTTCCCAATCTTGAAAAGAATGGATACTATTGCG
193 CATGTATCCTAATGAAGGGAATGTGTTCTTGGTTCCCAATCTTGAAAAGAATGGAGACTGTTACG
* * **
2000149 AGAATCAATGCTTGTCATATTTAGGGGATGAATTTTGATTTTAAGGAAAATAGGAAAAAGAAAAG
258 AGAATCGATGCTTGTCATATTTAAGGGATGAATTTTGATTTTAAGGAAAATAGGGCAAAGAAAAG
* * * *
2000214 ATTTTCATGCAAAAGAAAGTCATCAATATCATTTATCCTAACGAGGAGAATGTGTTTATGGCGCC
323 ATTTTCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCC
* * * *
2000279 TAACCACAAAATGAATGAAGATCATTACTAGAATTCATGTTTGTCTCAATTGTA-GCACAAACTT
388 TAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTG-AGGCACGAACTT
* * * *
2000343 ACACTTTCCCAAAATTGGTAGGAA
452 AGACTTTACAAAAATTGGTGGGAA
* ** * * * *
2000367 GTAAGCCTTTCTTGTGAAACCAAAGTTTTAATATCGTGTATCTTAACGAGAAG-CTATGTTTATG
1 GAAAGCCTTTCTTGTGAAACCAAAGCATCAATATCGTCTATCCTAATGAGAAGACTATGTTTATG
* * * * *
2000431 GTGCCAAATCTTGAAAAAAAGGGGATTAGTATTACTATTCTTGTTTGTCTTATTTAAG-GAAGCA
66 GTGCCTAATCCTGAAAAAAAGGGGATTAGTATGACTATTCATGTTTGTCTTATTAAAGAG-A-CA
* * ** * * * *
2000495 AACTTTGATTTCATCGAAAACAGTGGAAAGGAAAGCTTTTCTTGTGGCACCAAAGCGTCAATGTC
129 AACTTTGATTTTATCAAAAATGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTC
* * *
2000560 ATGTATCCTAATGAAGGAAATGTGTTCTTGGTTCCCAATCTTG-AAAGAATGGAGACTATTATGA
194 ATGTATCCTAATGAAGGGAATGTGTTCTTGGTTCCCAATCTTGAAAAGAATGGAGACTGTTACGA
* * *
2000624 GAATCGATTCTGGTCATATTT-AGTGGATGAATTTTGATTTTAAGGAAAATAAGGCAAAGAAAAG
259 GAATCGATGCTTGTCATATTTAAG-GGATGAATTTTGATTTTAAGGAAAATAGGGCAAAGAAAAG
* * *
2000688 ATTTCCAT-CTAAGAA-AAACTCATCAATATCATTTATCCCAATGAGGAGAATGTGAGGAGAATG
323 ATTTTCATGC-AA-AAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGT-----G--T-
* *
2000751 TACTCATAGTGCCTAATCACAAAATAAATGAAGATCAATACTAGAATCCATGTTTGTCTCATTTG
378 T--T-ATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTG
2000816 AGGCACGAACTTAGACTTTACAAAAATTGGTGGGAA
440 AGGCACGAACTTAGACTTTACAAAAATTGGTGGGAA
* * * * * * *
2000852 GAAAGCCTTTCTTGTGAAACCAAAGCGTTAATATCGTCTATCCGAA-CAGGATGACT-TCATTTG
1 GAAAGCCTTTCTTGTGAAACCAAAGCATCAATATCGTCTATCCTAATGA-GAAGACTAT-GTTTA
* * * **
2000915 TGGTGCCTGATCCT-AAAATGAATGGGGATTTGTATGACTATTCATGTTTACCTTATTTAAA-AG
64 TGGTGCCTAATCCTGAAAA--AAAGGGGATTAGTATGACTATTCATGTTTGTCTTA-TTAAAGAG
* * * *
2000978 AGCAAACTTTGATTCTATCAAAAATGGTGGAAAGAAAAGATTTTCTTGTGACACTAAAGCATCAA
126 A-CAAACTTTGATTTTATCAAAAATGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAA
* * *
2001043 TGTCATGTATCCTAATGAAAGGAATGTGTTCTTGGCTCCTAATCTTGAAAAGAATGGAGACTGTT
190 TGTCATGTATCCTAATGAAGGGAATGTGTTCTTGGTTCCCAATCTTGAAAAGAATGGAGACTGTT
** *
2001108 GTGAGAATCGATGCTTGTCATATTTAAGGGATGAATTTTGATTTTAAGGAAAATAGGGAAAAGAA
255 ACGAGAATCGATGCTTGTCATATTTAAGGGATGAATTTTGATTTTAAGGAAAATAGGGCAAAGAA
* * * * * *
2001173 AAGATTTTCATGCAAAAGAAAGTCATCAATATCTTTTATCCTAATAAGGATAATGTGCTTATTGT
320 AAGATTTTCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGT
* * * *
2001238 GCCTCATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTATTTCATTTGTGGCACGAAC
385 GCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAAC
* *
2001303 TTAAACTTTACGAAAATTGGTGGGAA
450 TTAGACTTTACAAAAATTGGTGGGAA
** * *
2001329 GAAAGCCTTTCTTGCAAAACCAAAGCATCAATATCGTCTATCCTAA-CAGGAAGACTATCTTTAT
1 GAAAGCCTTTCTTGTGAAACCAAAGCATCAATATCGTCTATCCTAATGA-GAAGACTATGTTTAT
* * * * * *
2001393 GGTGCCTAATACGGAAAAGAATGGGGATTACTATAACTATTTATGTTTGTCTTATTTAAA-AGAG
65 GGTGCCTAATCCTGAAAA-AAAGGGGATTAGTATGACTATTCATGTTTGTCTTA-TTAAAGAGA-
* * * * * *
2001457 CAAACATTGATTCTATCGAAAATGGTGGAAAGAAAAGCTTTTCTTGTGACATCAAAGCATCATTG
127 CAAACTTTGATTTTATCAAAAATGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATG
* * * * * *
2001522 TCATGTATCTTAATGAAGGAAATGTGTTCTTGCTTCCCAATATTAAAAAGAATGGAGACTGTTTC
192 TCATGTATCCTAATGAAGGGAATGTGTTCTTGGTTCCCAATCTTGAAAAGAATGGAGACTGTTAC
* *
2001587 GAGAATCGATACTTGTCATATCTAAGGGATGAATTTTGATTTTAAGGAAAATAGGGCAAAGAAAA
257 GAGAATCGATGCTTGTCATATTTAAGGGATGAATTTTGATTTTAAGGAAAATAGGGCAAAGAAAA
*
2001652 GA-TTTCAAT-TAAAATGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGT
322 GATTTTC-ATGCAAAA-GAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGT
* * * * *
2001715 GCCTAATCACAAAATGAATAAAG-T--TCACTAGAATCCTTGTTTGTCTCATTTGAGGTAGGAAC
385 GCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAAC
**
2001777 TT-GCACTTTACAAAAATTGGTAAGAA
450 TTAG-ACTTTACAAAAATTGGTGGGAA
* * * * * * * * *
2001803 GAAAGCCTTTCTTGCGAAACCAAAGCGTCAATATCTTGTATCTTTATGATAAGGCTAAGTTTTAT
1 GAAAGCCTTTCTTGTGAAACCAAAGCATCAATATCGTCTATCCTAATGAGAAGACTATG-TTTAT
*
2001868 GGAT-CCTAATCCTGAAAAGAATA-GGGATTAGTATGACTATTCAGGTTTGTCTTATTAAAGAGA
65 GG-TGCCTAATCCTGAAAA-AA-AGGGGATTAGTATGACTATTCATGTTTGTCTTATTAAAGAGA
* * *
2001931 CAAACTTTAATTTTATCAAAAATGGTTGAAAGAAAAGCTTTTCTTGCGACACCAAAGGATCAATG
127 CAAACTTTGATTTTATCAAAAATGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATG
* * ** * * *
2001996 TCATGTATCTTGACAAAGGGAATGTGTACTTGGTTCCCAATCTTAAAAAGAATGGAGATTGTTAC
192 TCATGTATCCTAATGAAGGGAATGTGTTCTTGGTTCCCAATCTTGAAAAGAATGGAGACTGTTAC
* * * * * *
2002061 AAGAATTGATGCTTGTCATATTTAAGGAAGGAATTTTGATTTTAAAGAAAATATGGCAAAGAAAA
257 GAGAATCGATGCTTGTCATATTTAAGGGATGAATTTTGATTTTAAGGAAAATAGGGCAAAGAAAA
* * * *
2002126 GATTTTCATACAAAACAAAGTAATCAATATCATTTATCC-------GAGAATGTGTTTATAGTGC
322 GATTTTCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGC
** * * * *
2002184 CTTCTCACAAAATGAATGAAGATCCTTACTAGAATCCATATTTGTCTCTTTTGAGGCACAAACTT
387 CTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTT
*
2002249 AGACTTTACAAAAATTGGT-GCAA
452 AGACTTTACAAAAATTGGTGGGAA
****** * * * * *
2002272 -TTTTTTTTTTTTTTGCAAAACCAAAGCATCAATATCATTTATCCTAATGAGAAGACTATATTTA
1 GAAAGCCTTTCTTGTG--AAACCAAAGCATCAATATCGTCTATCCTAATGAGAAGACTATGTTTA
* * * *
2002336 TGGTG-CTAATCCGGAAAAGAATA-GGGATCAGTATGACTATTCATGTCTGTCTTATTTAAGAGA
64 TGGTGCCTAATCCTGAAAA-AA-AGGGGATTAGTATGACTATTCATGTTTGTCTTATTAAAGAGA
* * * * * * * * *
2002399 GCAAACTTTGATTCTATCGAAAACGATGAAAAAAAAAAGCTTTTCTTGTGACA-CTAAGAAATCA
127 -CAAACTTTGATTTTATCAAAAATGGTG-GAAAGAAAAGCTTTTCTTGCGACACCAAAG-CATCA
* * ** * * *
2002463 ATGTCTTGTATCCTAATGAAAGGAATGCATTCTTGGCTT-CCAATCTTGAAAAGAATAGAGTCTA
189 ATGTCATGTATCCTAATGAAGGGAATGTGTTCTTGG-TTCCCAATCTTGAAAAGAATGGAGACTG
* * * *
2002527 TTATGAGAATCGATGCCTGTCATATTTAAGAGATGAATTTTGATTTTAAGGAAAAAATAGAGCAA
253 TTACGAGAATCGATGCTTGTCATATTTAAGGGATGAATTTTGATTTTAAGG--AAAATAGGGCAA
* *
2002592 AGAAAAGATTTTGATGCAAAAGAAAATCAAT-AATATCATTTATCCT-ATGAGGAGAATCTGTTT
316 AGAAAAGATTTTCATGCAAAAGAAAATC-ATCAATATCATTTATCCTAATGAGGAGAATGTGTTT
* * *
2002655 ATAGTGGCTAAACCCAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCA
380 ATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCA
* **
2002720 CGATCTTACCCTTTACAAAAATTGGTGGGAA
445 CGAACTTAGACTTTACAAAAATTGGTGGGAA
* *
2002751 GAAAGCCTTTCATATGAAACCAAAGCATCAATATCGTCTATCCTAATGAGAAGACTATGTTTATG
1 GAAAGCCTTTCTTGTGAAACCAAAGCATCAATATCGTCTATCCTAATGAGAAGACTATGTTTATG
* * *
2002816 GAGCCCAATCCTTAAAAAAAGGCGGATTAGTATGACTATTCATGTTTGTCTTATTAAAGAGACAA
66 GTGCCTAATCCTGAAAAAAAGG-GGATTAGTATGACTATTCATGTTTGTCTTATTAAAGAGACAA
* *
2002881 ACTTTGATTTTATCAAAAATGGTTGAAAGAAAAGCTTTTCTTGCGACACCAAAGAATCAATGTCA
130 ACTTTGATTTTATCAAAAATGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCA
** * * * **
2002946 TGTATCCTAATGAAGAAAATGTGTTCTAGGTTCCCAATCTTGAATAGAATGGAGACTATTATAAG
195 TGTATCCTAATGAAGGGAATGTGTTCTTGGTTCCCAATCTTGAAAAGAATGGAGACTGTTACGAG
* * * * * * *
2003011 AATCAATGCTGGTTATATTTAAGAGATGAATTTTGACTTTAAAGAAAATTGGGCAAAGAAAAGAT
260 AATCGATGCTTGTCATATTTAAGGGATGAATTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGAT
* * * * * * * *
2003076 TTTCATTCAAAAGAAAATCGTAAATATCATTTGTCCTAAAGAAGAGAATGTGTTTATAATGCCCA
325 TTTCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTA
* * ** * * * *
2003141 ATCATAAAATGAATGAAGAGCATTACTAGAATCTGTGTTTGACTCATTTAAGGCACAAACTTAAA
390 ATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGA
* ** *
2003206 TTTTACAAAAATTACTGAGAA
455 CTTTACAAAAATTGGTGGGAA
* ** * * * *
2003227 GAAAGCCTCTCTTCCGAAACCAAAGCATCAATCTCGTCTATCCTAACGAAAAGACTACGTTTATG
1 GAAAGCCTTTCTTGTGAAACCAAAGCATCAATATCGTCTATCCTAATGAGAAGACTATGTTTATG
* *
2003292 GTGCCTAATCCTGAAAAAAATGGGGATTAGTATGACTATTCATGTTTGTCTTATTTAAGAGAGCG
66 GTGCCTAATCCTGAAAAAAA-GGGGATTAGTATGACTATTCATGTTTGTCTTATTAAAGAGA-CA
* * * * * *
2003357 AACTTTGATTTTATAAAAAATGGTGGAAACAAAAGCTTTT-TCGACAACACAAAAGCAACAATGT
129 AACTTTGATTTTATCAAAAATGGTGGAAAGAAAAGCTTTTCTTG-CGACACCAAAGCATCAATGT
* * * * * *
2003421 CATCTATCCTAATGAAAGGAATGTGTTTTTTGGTTCCTAATATTGTAAAGAATGGAGACTGTTAC
193 CATGTATCCTAATGAAGGGAATGTG-TTCTTGGTTCCCAATCTTGAAAAGAATGGAGACTGTTAC
* * * * * * *
2003486 GAGAATCGATGTTTGCCATATTTAAGGGATGAATTTTGATTTTACGAAAAATA-TGAAAAAAAAA
257 GAGAATCGATGCTTGTCATATTTAAGGGATGAATTTTGATTTTAAGGAAAATAGGGCAAAGAAAA
* * * *
2003550 TAATTTCCAAGCAAAAGAAAATTATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGCT
322 -GATTTTCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAG-T
* * * * * *
2003615 -CCTTATCACAAAATGAATAAAGATCACTACTAGAATCCAAGTTTATCTCA-TTAAGGCACGAAC
385 GCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAAC
*
2003678 TAAGACTTTACAAAAATTGGTGGGAA
450 TTAGACTTTACAAAAATTGGTGGGAA
* * * * * * *
2003704 TAAAGCTTTTCTAGCGAAACCAAAGCATCAATATCATCTATCCTAACGAGAAGACTACGTTTATG
1 GAAAGCCTTTCTTGTGAAACCAAAGCATCAATATCGTCTATCCTAATGAGAAGACTATGTTTATG
* * * * * * *
2003769 GTGCCTAATTCGGAAAAGAATGGGGATTAGTATTACTATTCTTGTTTATCTTATTTAAGAGACAA
66 GTGCCTAATCCTGAAAA-AAAGGGGATTAGTATGACTATTCATGTTTGTCTTATTAAAGAGACAA
* * * * * *
2003834 ATTTTGATTCTATCAAAAATGGCGGAAAGAAAATCTTTTCTTGGGACACCAAAGCCTCAATGTCA
130 ACTTTGATTTTATCAAAAATGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCA
* * * * * **
2003899 TGTATCCTAATGAAGGAAATGTGTTATAGGTTCCCAATCCTGAAAAGAATGGAGACTATTATAAG
195 TGTATCCTAATGAAGGGAATGTGTTCTTGGTTCCCAATCTTGAAAAGAATGGAGACTGTTACGAG
* * * * *
2003964 AATTGATGCTGGTCATATTTAAGCGATGAATTTTGATTTTAAAGAAAATAAGGCAAAGAAAAGAT
260 AATCGATGCTTGTCATATTTAAGGGATGAATTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGAT
* * * * * ** * *
2004029 TTCCATTCAAAAGAAAATCGTAAATATCATTTGTCCTTGTGAGGAGAATGTGTTTATAATGGCTA
325 TTTCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTA
* * * * * * *
2004094 ATCATAAAATGATTGAAGATCATTACTAGAATTCGTGTTTGACTCTTTTGAGGCACGAACTTAAA
390 ATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGA
* * *
2004159 TTTTACAAAAATTAGTGAGAA
455 CTTTACAAAAATTGGTGGGAA
* ** * ** * ** *
2004180 AAAAGCCTTTCTTCCGAAACCAAAGCATCAATCTTATCTATCTTAACCAGAAGACTACGTTTATG
1 GAAAGCCTTTCTTGTGAAACCAAAGCATCAATATCGTCTATCCTAATGAGAAGACTATGTTTATG
* * ** * **
2004245 GTGCCTAATCCTGAAAAAAATGGGGATTGGTATAACTATTTTTGTTTGTCTGATTTAAA-AGTGT
66 GTGCCTAATCCTGAAAAAAA-GGGGATTAGTATGACTATTCATGTTTGTCTTA-TTAAAGAG-AC
* * * *
2004309 AAACTTTGACTCTATCAAAAAAGGTGGAAAGAAAAGCTTTTCTTGCAACACCAAAGCATCAATGT
128 AAACTTTGATTTTATCAAAAATGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGT
* * * *
2004374 CATGTATCCTAATGAAAGGAATGTGTTCTTGGTTCCCAATCTTGAAATGAATGAAGACTGTTACA
193 CATGTATCCTAATGAAGGGAATGTGTTCTTGGTTCCCAATCTTGAAAAGAATGGAGACTGTTACG
* * * *
2004439 AAAATCAATGCTTGTGC----TTAGGGGATGAATTTTGATTTTAAGGAAAATAGGGTAAAGAAAA
258 AGAATCGATGCTTGT-CATATTTAAGGGATGAATTTTGATTTTAAGGAAAATAGGGCAAAGAAAA
* * * *
2004500 GATTTTCATGCAAAAGAAAATCAAT-AATATCATTTATCCTAATTAGAAGATTGTGCTTATAGTG
322 GATTTTCATGCAAAAGAAAATC-ATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTG
* * *
2004564 CCTAA-CCCCAAATGAATGAAGATCATTACTAGAATCCACGTTTGTCTCATTTGAGGCACGAACT
386 CCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACT
* *
2004628 TACACTTTAC-AAAATTTGTGGGAA
451 TAGACTTTACAAAAATTGGTGGGAA
* *
2004652 GAAAGCCTTTCTTGTGAAACCAAAGCATCAATATCATCTATCCTAATGAGATGACTATGTTTATG
1 GAAAGCCTTTCTTGTGAAACCAAAGCATCAATATCGTCTATCCTAATGAGAAGACTATGTTTATG
* * * * * * *
2004717 GTGCCTAATCTTGAAAAGAATGCGGATTACTATAACTATTCACGTTTGTCTTATTAAAGAGACCA
66 GTGCCTAATCCTGAAAA-AAAGGGGATTAGTATGACTATTCATGTTTGTCTTATTAAAGAGACAA
*** * * * * * * * *
2004782 ACTTTGATACAATCGAAAACGATTGAGAGAAAAGTTTTTCTTGCAACACCAAAGAATCAATGTCA
130 ACTTTGATTTTATCAAAAATGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCA
* * * *
2004847 TGTATCCTAATAAAGGGAAAGTGTTCTTGGGTCCCAATCTTCAAAAGAATGGAGACTGTTACGAG
195 TGTATCCTAATGAAGGGAATGTGTTCTTGGTTCCCAATCTTGAAAAGAATGGAGACTGTTACGAG
** ** * *
2004912 AATCGATGCTTACCATATTTAAAAGATAAATTTTGATTTTAAGGAAGATAGGGCAAAGAAAAGA-
260 AATCGATGCTTGTCATATTTAAGGGATGAATTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGAT
* * * *
2004976 TTTCTATGCAAAAGAAAATCATCAATATCATTTATCATGATAAGGAGAATGTGTTTAAAGTGCCT
325 TTTC-ATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCT
* ** * * * *
2005041 AACCACAAAATGAAAAAAGATCATTCCTAGAATCCATGTTTGTCTCATTTGTGGCATGAACTTAC
389 AATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAG
*
2005106 ACTTTACAAAAATTGTTGGGAA
454 ACTTTACAAAAATTGGTGGGAA
** * * * *
2005128 GAAAGCCTTTCTTGCAAAACCAAAGCATAAATATCGTCTATCTTAACGAGAAAACTATGTTTATG
1 GAAAGCCTTTCTTGTGAAACCAAAGCATCAATATCGTCTATCCTAATGAGAAGACTATGTTTATG
* * * * * *
2005193 GTGCCAAATCCTGAAAAGAATA-GGGATTAGCATTACTATTCTTGTTTATCTTATTTAAGAGACA
66 GTGCCTAATCCTGAAAA-AA-AGGGGATTAGTATGACTATTCATGTTTGTCTTATTAAAGAGACA
* * *
2005257 AACTTTGACTTTATCAAAAATGGTGGAAAGAAAAGCTTTTCTTGGGACACCAAAGCCTCAATGTC
129 AACTTTGATTTTATCAAAAATGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTC
* * * *
2005322 ATATATCCTAATGAAGGAAATGTGTTCTTGGTTCCCAATCCTAAAAAGAATGGAGACTGTTACGA
194 ATGTATCCTAATGAAGGGAATGTGTTCTTGGTTCCCAATCTTGAAAAGAATGGAGACTGTTACGA
* * * * * *
2005387 GAACCG-TGCTGGTCATATTTAAGAGAGGAATTTTGATTTTTAGGAAAATAGGGCAAAGTAAAGA
259 GAATCGATGCTTGTCATATTTAAGGGATGAATTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGA
* * * * * * * * *
2005451 TTTCCATCCAAATGAAAATCGTCAATATTATTTATCCTAATGAGGAGAATATGCTTATAGTACCA
324 TTTTCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCT
* * *
2005516 AATCATAAAACT-AATGAAGATCATTACTAGAATCCATGTTTGACTAATTTGAGGCACGAACTTA
389 AATCACAAAA-TGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTA
* * *
2005580 CACTTTACAAAAATTGGTGAGCA
453 GACTTTACAAAAATTGGTGGGAA
* * * ** * * *
2005603 GAAAGGCTTTATTGCGAAACCAATA-CATCAATATCGAATATCCTAATGCGATGACTACGTTTAT
1 GAAAGCCTTTCTTGTGAAACCAA-AGCATCAATATCGTCTATCCTAATGAGAAGACTATGTTTAT
* * * * *
2005667 GGCGCCTAATCCT-AAAAAGAATAGGGATTTGTA-GACAATTCATGTTTGTCCTATTAAA-ATGA
65 GGTGCCTAATCCTGAAAAA-AA-GGGGATTAGTATGACTATTCATGTTTGTCTTATTAAAGA-GA
* * * * *
2005729 CAAACTTTGAATCTATTAAAAATGGTTGAAAGAAAAGCTTTTCTTACGACACCAAAGCATCAATG
127 CAAACTTTGATTTTATCAAAAATGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATG
* * * * * *
2005794 TCATTTATCCTAATTAAGGGAATGTGTTCTTGGTTCCTAATCTTGAAAATAATGGAGAATATTAC
192 TCATGTATCCTAATGAAGGGAATGTGTTCTTGGTTCCCAATCTTGAAAAGAATGGAGACTGTTAC
* * * * * *
2005859 GAGAACCGATACTTGCCATATTTAGGGGATGAATTTAGATTTTAAGGAAAATA-GG-AAAAAAAA
257 GAGAATCGATGCTTGTCATATTTAAGGGATGAATTTTGATTTTAAGGAAAATAGGGCAAAGAAAA
* * *
2005922 GATTTCCATGCAAAAGAAAATCATCAATATCATTTATCATAATGAGGAGAATGTATTTATAGTGC
322 GATTTTCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGC
* * * * *
2005987 CTAATCACCAAATGAATGAAGATCATTACTAGAATCCCTGTTGGACTCATTTGAGGCACAAACTT
387 CTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTT
*
2006052 AGACTTTATAAAAATTGGTGGGAA
452 AGACTTTACAAAAATTGGTGGGAA
* ** * ** * ** *
2006076 GAAAGCCTTTCTTTTGAAATTAAA-CTGTCAATATTATGTATCCTTTTGAGAAGACGATGTTTAT
1 GAAAGCCTTTCTTGTGAAACCAAAGC-ATCAATATCGTCTATCCTAATGAGAAGACTATGTTTAT
* *
2006140 GGTGCCGAATCCT-AAAAAGAATGGGGATTAGTATGACTATTCATGTTTATCTTATTTAAA-AGA
65 GGTGCCTAATCCTGAAAAA-AA-GGGGATTAGTATGACTATTCATGTTTGTCTTA-TTAAAGAGA
* * * * * *
2006203 CAAACTTTTATTTTATCAAAAACGGTTGAAAAAAAAGCTTTTCTTGTGACACTAAAGCATCAATG
127 CAAACTTTGATTTTATCAAAAATGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATG
* * * * **
2006268 TCATCTATCTTAATGAAGGTAATGTGTT-TATGGATCCCAATCTTGAAAAGAATGGAGACTACTA
192 TCATGTATCCTAATGAAGGGAATGTGTTCT-TGGTTCCCAATCTTGAAAAGAATGGAGACTGTTA
* * * * * ** *
2006332 CGAGAATCAATGCTTGCCTTATTTGAGGGATGAACTTTT-ATTTTGAGGAATGTAGGGCAAAGGA
256 CGAGAATCGATGCTTGTCATATTTAAGGGATGAA-TTTTGATTTTAAGGAAAATAGGGCAAAGAA
* * * ***
2006396 AACATTTCCATGCAAAAGAAAATCATCAATATCATTTACCCTAATGAGGAGAATACATTTATAGT
320 AAGATTTTCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGT
* * * * * *
2006461 GTCTAATCATAAGATGAATGAAGATCATTACTAGAATTCATGTTTGTCTCATTTAAGGCATGAAC
385 GCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAAC
* *
2006526 TTAAACTTTATAAAAATTGGTGGGAA
450 TTAGACTTTACAAAAATTGGTGGGAA
* * * *
2006552 GAAAGTCTTTCTTGTG------AA--ATTAA-A----CTGT-C-AAT------ACCATGTTTATG
1 GAAAGCCTTTCTTGTGAAACCAAAGCATCAATATCGTCTATCCTAATGAGAAGACTATGTTTATG
* ** * *
2006596 GTGCCTAATCCTGAAAAGAATGGGGATTAGCGTGACTAATCATGTTT-TCCTTATTTAAGAGACA
66 GTGCCTAATCCTGAAAA-AAAGGGGATTAGTATGACTATTCATGTTTGT-CTTATTAAAGAGACA
* ** * * *
2006660 AACTTTGATTCTATCAAAAACAGTTGAAAAAAAAGCTTTTTTTGCGACACCAAAGCATCAATGTC
129 AACTTTGATTTTATCAAAAATGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTC
* * * ** *
2006725 ATCTATTCTAATGAAGGGATTGTGTTCTTTATTCCCAATATTGAAAAGAATGGAGACTGTTACGA
194 ATGTATCCTAATGAAGGGAATGTGTTCTTGGTTCCCAATCTTGAAAAGAATGGAGACTGTTACGA
* * *
2006790 GAATCGATGCTGGTTATATATAAGGGATGAATTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGA
259 GAATCGATGCTTGTCATATTTAAGGGATGAATTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGA
* * * * *
2006855 TTTCCAT-CAAAAACAAAATCATCAAAATCATTTACCCCAATGAGGAGAATGTGTTTATAGTGCC
324 TTTTCATGC-AAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCC
* * * *
2006919 TAATCACAAAATGAACGATGATCATTACTAGAATCCATGTTTGACTCATTTGAAGCACGAACTTA
388 TAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTA
* * **
2006984 GACATAATTAAAATTGGTGGGAA
453 GACTTTACAAAAATTGGTGGGAA
* * * *
2007007 GAAAGCCTTTCTTGCGAAACCAAAGCATCAATATCGTCTACCCTAATAAGAAGACTACGTTTATG
1 GAAAGCCTTTCTTGTGAAACCAAAGCATCAATATCGTCTATCCTAATGAGAAGACTATGTTTATG
* * * * * * *
2007072 GTGCCTAATCC-AAAAAAGAATGGGGATTGGTATAACTGTTTATGTTTGTCTTATTTAAGAGAGT
66 GTGCCTAATCCTGAAAAA-AA-GGGGATTAGTATGACTATTCATGTTTGTCTTATTAAAGAGA-C
* * * *
2007136 AAACTTCGATTCTATAAAAAAT-GTAGGAAA-AAAAGCTTTTCCTT-CAACACCAAAGCATCAAT
128 AAACTTTGATTTTATCAAAAATGGT-GGAAAGAAAAGCTTTT-CTTGCGACACCAAAGCATCAAT
* * * *
2007198 GTCATGTATCCTAATG-AGGTTAATGAGCTCTTGGTTCCCAATCTTGAAAAGAATGGAGACTATT
191 GTCATGTATCCTAATGAAGG-GAATGTGTTCTTGGTTCCCAATCTTGAAAAGAATGGAGACTGTT
* * * * * *
2007262 ACGAGAATCGATGCTTGTCTTATTTAAGAGTTGAATTTTGATTTTTAGAAAAATAGGGCAAAGTA
255 ACGAGAATCGATGCTTGTCATATTTAAGGGATGAATTTTGATTTTAAGGAAAATAGGGCAAAGAA
* * ***
2007327 AAGATTTTGATGCAAAAGAAAATCATCAATATCATTTATCCTAAAGAGGAGAAAACG-TTAGTAG
320 AAGATTTTCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTA-TAG
* * * * * *
2007391 TGCCTAAGCACAAAATGAGTGAAGATGATTACTAGAATCCGTGTTGGTCTCATTTGAGGCATGAA
384 TGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAA
* * *
2007456 CTTAGACTTTAGAAAAATTGGCGAGAA
449 CTTAGACTTTACAAAAATTGGTGGGAA
* * * * *
2007483 GAAAGCCATTCTT-TCGAAACCAAAGCATCAATATCGTCTATCCAAACGAGAAAACTACGTTTAT
1 GAAAGCCTTTCTTGT-GAAACCAAAGCATCAATATCGTCTATCCTAATGAGAAGACTATGTTTAT
** *
2007547 GGTGCCTAATCCTGAAAATAATA-GGGATTAGTATGACCGTTCATGTTTGTCTTATTTAAGAGAG
65 GGTGCCTAATCCTGAAAA-AA-AGGGGATTAGTATGACTATTCATGTTTGTCTTATTAAAGAGA-
* * ** * * *
2007611 CAAACTTTGATTATAT-AAAAAGCGGTAAAAAGAAAAACTTTTCTTACGACACTAAAGCATCAAT
127 CAAACTTTGATTTTATCAAAAA-TGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAAT
* * *
2007675 GTCATGTATCCTAATGAAGGGAATGTGTTCTTGGTTCCTAATCTTCAAAAGAATGGAGATTGTTA
191 GTCATGTATCCTAATGAAGGGAATGTGTTCTTGGTTCCCAATCTTGAAAAGAATGGAGACTGTTA
* * * *
2007740 TGAGAATCGATGCTTGTCATACTTATGGGATGAATTTTGATTTTAAAGAAAATAGGGCTAAA-AA
256 CGAGAATCGATGCTTGTCATATTTAAGGGATGAATTTTGATTTTAAGGAAAATAGGGC-AAAGAA
* * * **
2007804 AAGATTTTCATGCAAAAGAATATCATCAATATCATTTGTCCTAAAGAGGAGAATGTGTTTATAAC
320 AAGATTTTCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGT
* * * * *
2007869 GCCTTATCACAAAATGAATGAAGATCGTTACTAGATTCCATGTTTGCCTCACTTGAGGCACGAAC
385 GCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAAC
* *
2007934 TTAAACTTTGCAAAAATTGGTGGGAA
450 TTAGACTTTACAAAAATTGGTGGGAA
* ** * * *
2007960 GAAAAG-CTATTCTAGCAAAACCAAAGCATCAATATCGTTTATGCTAATGAGAAGACTA-GTTTC
1 G-AAAGCCT-TTCTTGTGAAACCAAAGCATCAATATCGTCTATCCTAATGAGAAGACTATGTTTA
* * *
2008023 TGGTGCCTAATTCGGAAAATAATGGGGATTAGTATGACTATTCATGTTTGTCTTATTAAAGAGAC
64 TGGTGCCTAATCCTGAAAA-AAAGGGGATTAGTATGACTATTCATGTTTGTCTTATTAAAGAGAC
* * * * *
2008088 AAACTTTGATTTTATCAAAAACGATGGAAAGAAAAGCTTTTCTTGCAACACCAGAGTATCAATGT
128 AAACTTTGATTTTATCAAAAATGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGT
* * * * *
2008153 CATGTATCCTAATAAAGTGAATGTGCTCTTGGTTCCTAATCTTGAAAAGAATGGAGGCTGTTACG
193 CATGTATCCTAATGAAGGGAATGTGTTCTTGGTTCCCAATCTTGAAAAGAATGGAGACTGTTACG
* * *
2008218 AGAATCAATGCTTGTCTTATTTAAGAATGGAGATTGTTATGAGAATCGATGCTTGTCATACTTAA
258 AGAATCGATGCTTGTCATATTT---AA--G-G---G--AT--GAAT---T--TTG--AT-TTTAA
* **** ***** *
2008283 GGGATGAATTTTGATTTTAAAGAAAATAGGGCTAAAAAAAGATTTTCATGCAAAAGAATA-CATC
302 -GGA--AA--AT-AGGGCAAAG-AAA-A--G----ATTTTCA--T----GCAAAAGAAAATCATC
* * ** *
2008347 AATATCATTTGTCCTAAAGAGGAGAATGTGTTTATAACGCCTTATCACAAAATGAATGAAGATCA
347 AATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCA
* * * *
2008412 TTACTAGAATCCAGGCTTGTCTCATTTGAGGCATGAACTTAGA-TTTGACAAAATTTGGTGGGAA
412 TTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTT-ACAAAAATTGGTGGGAA
* ** * * * *
2008476 GAAAGCCTTTCTTATGATTCCAAAGCATCAATATCGTTTACCCTTATGAGAAGACTACGTTTATG
1 GAAAGCCTTTCTTGTGAAACCAAAGCATCAATATCGTCTATCCTAATGAGAAGACTATGTTTATG
* * * * * * * *
2008541 GCGCCTAAT-CTAAAAAATAATGGGGATTAGTATGACAATTTATGTCTGTCCTATTTAAGAGAGT
66 GTGCCTAATCCTGAAAAA-AA-GGGGATTAGTATGACTATTCATGTTTGTCTTATTAAAGAGA-C
* * * * * *
2008605 AAACATTGATTCTATCAAAAAAT-ATGGAAAAAAAAAAGCTTTTCTTGCAACACTAAAGCATCAA
128 AAACTTTGATTTTATC-AAAAATGGTGG--AAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAA
** * * * ** * * * * * * *
2008669 CATCAAGTATCTTAATCAATTGAATGTGCTATTGATTCCTAATGTTAAAAAGAATGGAGACTATT
190 TGTCATGTATCCTAATGAAGGGAATGTGTTCTTGGTTCCCAATCTTGAAAAGAATGGAGACTGTT
* * * * * ** *
2008734 ACGAGAATCGATGCTTATCTTTTTTAAGAGTTGAATTTCAATTTTTAGGAAAATAGGGCAAAGAA
255 ACGAGAATCGATGCTTGTCATATTTAAGGGATGAATTTTGATTTTAAGGAAAATAGGGCAAAGAA
* *
2008799 AAGATTTTGATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTGT-GT
320 AAGATTTTCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGT
* ** * * ***
2008863 ACCTACGCACAAAATGAATGAAGATCATTACTAGAATCCATATTTGTCTCATTTAAGATTCGAAC
385 GCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAAC
*
2008928 TTAGACTTTAGAAAAATTGGTGGGAA
450 TTAGACTTTACAAAAATTGGTGGGAA
** * * * * * *
2008954 GAAAGCCTTTCTTGCAAAACAAAAGCATCAACATTGTCTATCCTAACGAGAAGACTTTGTTTGTG
1 GAAAGCCTTTCTTGTGAAACCAAAGCATCAATATCGTCTATCCTAATGAGAAGACTATGTTTATG
* *
2009019 GTGCCAAATCCGGAAAGAAAAGGG
66 GTGCCTAATCCTGAAA-AAAAGGG
2009043 CAAACTTTGA
Statistics
Matches: 7222, Mismatches: 1234, Indels: 439
0.81 0.14 0.05
Matches are distributed among these distances:
454 10 0.00
455 358 0.05
456 6 0.00
457 1 0.00
461 3 0.00
462 1 0.00
463 6 0.00
464 1 0.00
467 38 0.01
468 66 0.01
469 35 0.00
470 205 0.03
471 130 0.02
472 160 0.02
473 285 0.04
474 922 0.13
475 780 0.11
476 1411 0.20
477 1317 0.18
478 536 0.07
479 97 0.01
480 9 0.00
481 2 0.00
482 3 0.00
483 1 0.00
484 6 0.00
485 131 0.02
486 16 0.00
487 131 0.02
488 124 0.02
489 7 0.00
490 1 0.00
491 3 0.00
492 6 0.00
493 1 0.00
494 3 0.00
495 2 0.00
496 2 0.00
497 7 0.00
498 5 0.00
499 2 0.00
500 2 0.00
501 1 0.00
502 4 0.00
503 2 0.00
504 3 0.00
505 1 0.00
506 4 0.00
507 1 0.00
508 1 0.00
510 1 0.00
511 2 0.00
513 1 0.00
514 2 0.00
515 53 0.01
516 174 0.02
517 29 0.00
518 5 0.00
519 106 0.01
ACGTcount: A:0.37, C:0.14, G:0.18, T:0.31
Consensus pattern (475 bp):
GAAAGCCTTTCTTGTGAAACCAAAGCATCAATATCGTCTATCCTAATGAGAAGACTATGTTTATG
GTGCCTAATCCTGAAAAAAAGGGGATTAGTATGACTATTCATGTTTGTCTTATTAAAGAGACAAA
CTTTGATTTTATCAAAAATGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCAT
GTATCCTAATGAAGGGAATGTGTTCTTGGTTCCCAATCTTGAAAAGAATGGAGACTGTTACGAGA
ATCGATGCTTGTCATATTTAAGGGATGAATTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATT
TTCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAA
TCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGAC
TTTACAAAAATTGGTGGGAA
Found at i:2008256 original size:41 final size:41
Alignment explanation
Indices: 2008199--2008283 Score: 116
Period size: 41 Copynumber: 2.1 Consensus size: 41
2008189 TAATCTTGAA
* * *
2008199 AAGAATGGAGGCTGTTACGAGAATCAATGCTTGTCTTATTT
1 AAGAATGGAGACTGTTACGAGAATCAATGCTTGTCATACTT
* * *
2008240 AAGAATGGAGATTGTTATGAGAATCGATGCTTGTCATACTT
1 AAGAATGGAGACTGTTACGAGAATCAATGCTTGTCATACTT
2008281 AAG
1 AAG
2008284 GGATGAATTT
Statistics
Matches: 38, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
41 38 1.00
ACGTcount: A:0.32, C:0.11, G:0.25, T:0.33
Consensus pattern (41 bp):
AAGAATGGAGACTGTTACGAGAATCAATGCTTGTCATACTT
Done.