Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold215
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 2124891
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
File 6 of 16
Found at i:868866 original size:40 final size:39
Alignment explanation
Indices: 868804--868951 Score: 200
Period size: 40 Copynumber: 3.9 Consensus size: 39
868794 TTTTCACAAT
*
868804 TTGTATTGATACATTGTTCATTGTATCGATACATTGTTCA
1 TTGTATTGATACATT-TTCATTGTATCGATACATTGCTCA
*
868844 TTGTATCGATACATTTTGCATTGTATCGATACATTGCTCA
1 TTGTATTGATACATTTT-CATTGTATCGATACATTGCTCA
868884 TTGTATTGAT--A----CATTGTATCGATACATTGCTCA
1 TTGTATTGATACATTTTCATTGTATCGATACATTGCTCA
*
868917 TTGTATTGATACATTTTACAATGTATCGATACATT
1 TTGTATTGATACATTTT-CATTGTATCGATACATT
868952 CAGGCATTTT
Statistics
Matches: 96, Mismatches: 4, Indels: 16
0.83 0.03 0.14
Matches are distributed among these distances:
33 32 0.33
35 1 0.01
38 1 0.01
39 2 0.02
40 60 0.62
ACGTcount: A:0.27, C:0.14, G:0.14, T:0.45
Consensus pattern (39 bp):
TTGTATTGATACATTTTCATTGTATCGATACATTGCTCA
Found at i:868899 original size:33 final size:33
Alignment explanation
Indices: 868862--868931 Score: 140
Period size: 33 Copynumber: 2.1 Consensus size: 33
868852 ATACATTTTG
868862 CATTGTATCGATACATTGCTCATTGTATTGATA
1 CATTGTATCGATACATTGCTCATTGTATTGATA
868895 CATTGTATCGATACATTGCTCATTGTATTGATA
1 CATTGTATCGATACATTGCTCATTGTATTGATA
868928 CATT
1 CATT
868932 TTACAATGTA
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 37 1.00
ACGTcount: A:0.27, C:0.16, G:0.14, T:0.43
Consensus pattern (33 bp):
CATTGTATCGATACATTGCTCATTGTATTGATA
Found at i:868931 original size:13 final size:13
Alignment explanation
Indices: 868882--868912 Score: 53
Period size: 13 Copynumber: 2.4 Consensus size: 13
868872 ATACATTGCT
*
868882 CATTGTATTGATA
1 CATTGTATCGATA
868895 CATTGTATCGATA
1 CATTGTATCGATA
868908 CATTG
1 CATTG
868913 CTCATTGTAT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 17 1.00
ACGTcount: A:0.29, C:0.13, G:0.16, T:0.42
Consensus pattern (13 bp):
CATTGTATCGATA
Found at i:868942 original size:53 final size:53
Alignment explanation
Indices: 868842--868951 Score: 143
Period size: 53 Copynumber: 2.1 Consensus size: 53
868832 ATACATTGTT
* * *
868842 CATTGTATCGATACATTTTGCATTGTATCGATACATTGCTCATTGTATTGATA
1 CATTGTATCGATACATTCTGCATTGTATCGATACATTGCTCAATGTATCGATA
* *
868895 CATTGTATCGATACATTGCT-CATTGTATTGATACATT-TTACAATGTATCGATA
1 CATTGTATCGATACATT-CTGCATTGTATCGATACATTGCT-CAATGTATCGATA
868948 CATT
1 CATT
868952 CAGGCATTTT
Statistics
Matches: 50, Mismatches: 5, Indels: 4
0.85 0.08 0.07
Matches are distributed among these distances:
52 1 0.02
53 48 0.96
54 1 0.02
ACGTcount: A:0.28, C:0.15, G:0.14, T:0.43
Consensus pattern (53 bp):
CATTGTATCGATACATTCTGCATTGTATCGATACATTGCTCAATGTATCGATA
Found at i:869951 original size:353 final size:353
Alignment explanation
Indices: 869298--869979 Score: 1202
Period size: 353 Copynumber: 1.9 Consensus size: 353
869288 CGCTCGGTTA
*
869298 TTTACGGGTACTTCGGACGATCCAAAGAGCCAAAGCTCGCTCGACTTAAAATAAAAGGGGATAGT
1 TTTACGAGTACTTCGGACGATCCAAAGAGCCAAAGCTCGCTCGACTTAAAATAAAAGGGGATAGT
* *
869363 CAGTATCCGAGGGTGAGAGACTATCGGACGAATCGCACGTCCTATAAGTCTCGGGTGGTCATTAC
66 CAATATCCGAGGGTGAAAGACTATCGGACGAATCGCACGTCCTATAAGTCTCGGGTGGTCATTAC
*
869428 GAAATGACCATGAACTTGGAGTCGCCACCGATCATTTCGGGCTAGGCATGATCGGATGCTTATTG
131 GAAATGACCATGAACTTGGAGTCGCCACCGATCATTTCGGGCTAGGCATGATCGGATGCCTATTG
* * *
869493 AAACCTATGTCTTGAGTTACGAAACTCGAAACATCGATTTTGCGGTCTACATAATTCAGAGATTC
196 AAACCTATGTCTTGAGTCACGAAACTCGAAACATCGATCTCGCGGTCTACATAATTCAGAGATTC
* * *
869558 GTGTTTGGGTTCGGGAGTTGGTTATGCGTGGGGAAGGATTAGCACCCCTACAACGCCCGAAATCG
261 GTGTTTGGGTTCGGGAGTTGGTTACGCGTGGGGAAGGATTAGCACCCCCACAACGCCCGAAATCA
869623 GTACTGTCGCGACATGCGCTCGGCCTCT
326 GTACTGTCGCGACATGCGCTCGGCCTCT
* *
869651 TTTACGAGTACTTCGGACGATCCGAAGGGCCAAAGCTCGCTCGACTTAAAATAAAAGGGGATAGT
1 TTTACGAGTACTTCGGACGATCCAAAGAGCCAAAGCTCGCTCGACTTAAAATAAAAGGGGATAGT
* * *
869716 CAATATGCGGGGGTGAAAGACTATCGGACGAATCGCTCGTCCTATAAGTCTCGGGTGGTCATTAC
66 CAATATCCGAGGGTGAAAGACTATCGGACGAATCGCACGTCCTATAAGTCTCGGGTGGTCATTAC
869781 GAAATGACCATGAACTTGGAGTCGCCACCGATCATTTCGGGCTAGGCATGATCGGATGCCTATTG
131 GAAATGACCATGAACTTGGAGTCGCCACCGATCATTTCGGGCTAGGCATGATCGGATGCCTATTG
* *
869846 AAACCTATGTTTTGAGTCACGAAACTCGAAACATCGATCTCGCGGTCTACGTAATTCAGAGATTC
196 AAACCTATGTCTTGAGTCACGAAACTCGAAACATCGATCTCGCGGTCTACATAATTCAGAGATTC
*
869911 GTGTTTGGGTTCGGGAGTTGGTTACGCGTGGGGAAGGATTAGCACCCCCACGACGCCCGAAATCA
261 GTGTTTGGGTTCGGGAGTTGGTTACGCGTGGGGAAGGATTAGCACCCCCACAACGCCCGAAATCA
869976 GTAC
326 GTAC
869980 CTTCTAACTA
Statistics
Matches: 311, Mismatches: 18, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
353 311 1.00
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (353 bp):
TTTACGAGTACTTCGGACGATCCAAAGAGCCAAAGCTCGCTCGACTTAAAATAAAAGGGGATAGT
CAATATCCGAGGGTGAAAGACTATCGGACGAATCGCACGTCCTATAAGTCTCGGGTGGTCATTAC
GAAATGACCATGAACTTGGAGTCGCCACCGATCATTTCGGGCTAGGCATGATCGGATGCCTATTG
AAACCTATGTCTTGAGTCACGAAACTCGAAACATCGATCTCGCGGTCTACATAATTCAGAGATTC
GTGTTTGGGTTCGGGAGTTGGTTACGCGTGGGGAAGGATTAGCACCCCCACAACGCCCGAAATCA
GTACTGTCGCGACATGCGCTCGGCCTCT
Found at i:870760 original size:79 final size:78
Alignment explanation
Indices: 870603--870822 Score: 230
Period size: 79 Copynumber: 2.8 Consensus size: 78
870593 AACTAGGCTA
* * * * * *
870603 GAGTATCCCCGATTATGAAAAATCAGTGTTCT-AGAAATAAAAATTGGGGTTGAAGTATCCCCTC
1 GAGTATCCCTGATTATG-AAAATCGGTGTTTTGA-AAAT-AAAATCGGGGTTGGAGTATCCCCGC
* *
870667 GAAAATAATAGGGTTG
63 AAAAATAACAGGGTTG
* *
870683 GAGTATCCCTGATTATAGAAAATCGGTATTTTGAAAATAAAATCGGGGTTGGAGTATTCCCGCAA
1 GAGTATCCCTGATTAT-GAAAATCGGTGTTTTGAAAATAAAATCGGGGTTGGAGTATCCCCGCAA
*
870748 AAATAACGGGGTTG
65 AAATAACAGGGTTG
* * * *
870762 GAGTAT-CCTCGATTGTGAGAAATTGGTGTTTTGGAAATAAAATCGGAGTTGGAGT-TCCCCG
1 GAGTATCCCT-GATTATGA-AAATCGGTGTTTTGAAAATAAAATCGGGGTTGGAGTATCCCCG
870823 ATTGTGAAAA
Statistics
Matches: 119, Mismatches: 17, Indels: 10
0.82 0.12 0.07
Matches are distributed among these distances:
78 10 0.08
79 77 0.65
80 30 0.25
81 2 0.02
ACGTcount: A:0.33, C:0.13, G:0.25, T:0.29
Consensus pattern (78 bp):
GAGTATCCCTGATTATGAAAATCGGTGTTTTGAAAATAAAATCGGGGTTGGAGTATCCCCGCAAA
AATAACAGGGTTG
Found at i:870828 original size:50 final size:51
Alignment explanation
Indices: 870757--870871 Score: 171
Period size: 50 Copynumber: 2.3 Consensus size: 51
870747 AAAATAACGG
* * * *
870757 GGTTGGAGTATCCTCGATTGTGAGAAATTGGTGTTTTGGAAATAAAATCG-
1 GGTTGGAGTATCCCCGATTGTGAAAAATTGGTATTTTAGAAATAAAATCGA
870807 GAGTTGGAGT-TCCCCGATTGTGAAAAATTGGTATTTTAGAAATAAAATCGA
1 G-GTTGGAGTATCCCCGATTGTGAAAAATTGGTATTTTAGAAATAAAATCGA
870858 GGTTGGAGTATCCC
1 GGTTGGAGTATCCC
870872 TTCGGAAATA
Statistics
Matches: 58, Mismatches: 4, Indels: 5
0.87 0.06 0.07
Matches are distributed among these distances:
50 45 0.78
51 13 0.22
ACGTcount: A:0.30, C:0.10, G:0.28, T:0.32
Consensus pattern (51 bp):
GGTTGGAGTATCCCCGATTGTGAAAAATTGGTATTTTAGAAATAAAATCGA
Found at i:870891 original size:28 final size:27
Alignment explanation
Indices: 870860--870923 Score: 76
Period size: 28 Copynumber: 2.3 Consensus size: 27
870850 AAAATCGAGG
*
870860 TTGGAGTATCCCTTCG-GAAATAATGGGA
1 TTGGAGTAT-CC-TCGAGAAATAACGGGA
*
870888 TTGGAGTATCCTCGATGAAATAACGGGG
1 TTGGAGTATCCTCGA-GAAATAACGGGA
870916 TTGGAGTA
1 TTGGAGTA
870924 CCCCGATTAT
Statistics
Matches: 32, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
26 3 0.09
27 2 0.06
28 27 0.84
ACGTcount: A:0.28, C:0.12, G:0.31, T:0.28
Consensus pattern (27 bp):
TTGGAGTATCCTCGAGAAATAACGGGA
Found at i:870960 original size:108 final size:109
Alignment explanation
Indices: 870840--871036 Score: 308
Period size: 108 Copynumber: 1.8 Consensus size: 109
870830 AAAATTGGTA
* * * *
870840 TTTTAGAAATAAAATCGAGGTTGGAGTATCCCTTCGGAAATAATG-GGATTGGAGTATCCTCGAT
1 TTTTAGAAATAAAACCGAGGTTGGAGTATCCCCTCGGAAATAACGAGG-TTGGAGTATCCCCGAT
870904 GAAATAACGGGGTTGGAGTA-CCCCGATTATAAGAAAAACATTAT
65 GAAATAACGGGGTTGGAGTATCCCCGATTATAAGAAAAACATTAT
* * *
870948 TTTTAGATATAAAGCCGGGGTTGGAGTATCCCCTCGGAAATAACGAGGTTGGAGTATCCCCGATG
1 TTTTAGAAATAAAACCGAGGTTGGAGTATCCCCTCGGAAATAACGAGGTTGGAGTATCCCCGATG
871013 AAATAACGGGGTTGGAGTATCCCC
66 AAATAACGGGGTTGGAGTATCCCC
871037 AATTGTGAAA
Statistics
Matches: 80, Mismatches: 7, Indels: 3
0.89 0.08 0.03
Matches are distributed among these distances:
108 74 0.93
109 6 0.08
ACGTcount: A:0.31, C:0.16, G:0.26, T:0.26
Consensus pattern (109 bp):
TTTTAGAAATAAAACCGAGGTTGGAGTATCCCCTCGGAAATAACGAGGTTGGAGTATCCCCGATG
AAATAACGGGGTTGGAGTATCCCCGATTATAAGAAAAACATTAT
Found at i:871006 original size:28 final size:28
Alignment explanation
Indices: 870966--871036 Score: 106
Period size: 28 Copynumber: 2.5 Consensus size: 28
870956 ATAAAGCCGG
**
870966 GGTTGGAGTATCCCCTCGGAAATAACGA
1 GGTTGGAGTATCCCCGAGGAAATAACGA
* *
870994 GGTTGGAGTATCCCCGATGAAATAACGG
1 GGTTGGAGTATCCCCGAGGAAATAACGA
871022 GGTTGGAGTATCCCC
1 GGTTGGAGTATCCCC
871037 AATTGTGAAA
Statistics
Matches: 39, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
28 39 1.00
ACGTcount: A:0.25, C:0.21, G:0.31, T:0.23
Consensus pattern (28 bp):
GGTTGGAGTATCCCCGAGGAAATAACGA
Found at i:874285 original size:42 final size:43
Alignment explanation
Indices: 874222--874327 Score: 121
Period size: 42 Copynumber: 2.5 Consensus size: 43
874212 ATGTTCTGTT
* * *
874222 TTTC-GAGGACAAAGGAAAAAGGGAAACGAAA-TACGTCCTGC
1 TTTCTGAGGACAAAAGAAAAAGGGAAAAGAAAGTACGTCCTAC
* *
874263 TTTCTGAGGACAAAAGAAAAA-GGAAAATAAAGTGCGTCCTAC
1 TTTCTGAGGACAAAAGAAAAAGGGAAAAGAAAGTACGTCCTAC
874305 TCTT-TGAGGACAAAAGAGAAAAG
1 T-TTCTGAGGACAAAAGA-AAAAG
874328 AAGGGAAGGA
Statistics
Matches: 55, Mismatches: 5, Indels: 7
0.82 0.07 0.10
Matches are distributed among these distances:
41 12 0.22
42 37 0.67
43 6 0.11
ACGTcount: A:0.44, C:0.14, G:0.25, T:0.17
Consensus pattern (43 bp):
TTTCTGAGGACAAAAGAAAAAGGGAAAAGAAAGTACGTCCTAC
Found at i:874485 original size:122 final size:115
Alignment explanation
Indices: 874344--874597 Score: 348
Period size: 122 Copynumber: 2.1 Consensus size: 115
874334 AGGAAATGTG
874344 TCCTGCTCTTTGAGGACTGAAAAGTGCCACCAACTCGTGTGGGCTTTGAAAA-GAAAAGGCATCC
1 TCCTGCTCTTTGAGGACTGAAAAGTGCCACCAACTCGTGTGGGCTTT-AAAAGGAAAAGGCATCC
*
874408 TGCCCTTTGAGGACTGGAAGGTGCCACCAACTTGTGTGGGCTTTGCAAAAAGAAAGCA
65 TGCCCTTTGAGGA-TGGAAGGTGCCACCAACTTGTGTGGGCGTT---AAAAG---GCA
* * *
874466 TCCTGCTCTTTGAGGACTGAAAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGAGAAGGCGTCCT
1 TCCTGCTCTTTGAGGACTGAAAAGTGCCACCAACTCGTGTGGGCTTTAAAAGGAAAAGGCATCCT
* * * * *
874531 GCTCTTTGAGGATTGAAGGTGCCATCAGCTTGTGTGGTCGTTAAAAGGCA
66 GCCCTTTGAGGATGGAAGGTGCCACCAACTTGTGTGGGCGTTAAAAGGCA
874581 TCCTGCTCTTTGAGGAC
1 TCCTGCTCTTTGAGGAC
874598 AAAAAGGCGA
Statistics
Matches: 122, Mismatches: 9, Indels: 9
0.87 0.06 0.06
Matches are distributed among these distances:
115 20 0.16
118 5 0.04
121 29 0.24
122 68 0.56
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (115 bp):
TCCTGCTCTTTGAGGACTGAAAAGTGCCACCAACTCGTGTGGGCTTTAAAAGGAAAAGGCATCCT
GCCCTTTGAGGATGGAAGGTGCCACCAACTTGTGTGGGCGTTAAAAGGCA
Found at i:874575 original size:60 final size:61
Alignment explanation
Indices: 874344--874597 Score: 310
Period size: 61 Copynumber: 4.3 Consensus size: 61
874334 AGGAAATGTG
* *
874344 TCCTGCTCTTTGAGGACTGAAAAGTGCCACCAACTCGTGTGGGCTTTGAAAAGAAAAGGCA
1 TCCTGCTCTTTGAGGACTGAAAAGTGCCACCAACTTGTGTGGGCTTTGAAAAGAGAAGGCA
* * * *
874405 TCCTGCCCTTTGAGGACTGGAAGGTGCCACCAACTTGTGTGGGCTTTGCAAAA-AGAAAGCA
1 TCCTGCTCTTTGAGGACTGAAAAGTGCCACCAACTTGTGTGGGCTTTG-AAAAGAGAAGGCA
*
874466 TCCTGCTCTTTGAGGACTGAAAAGTGCCACCAACTTGTGTGGGCTTT-AAAAGGAGAAGGCG
1 TCCTGCTCTTTGAGGACTGAAAAGTGCCACCAACTTGTGTGGGCTTTGAAAA-GAGAAGGCA
* * * * * *
874527 TCCTGCTCTTTGAGGATTG-AAGGTGCCATCAGCTTGTGTGGTCGTT----A-A-AAGGCA
1 TCCTGCTCTTTGAGGACTGAAAAGTGCCACCAACTTGTGTGGGCTTTGAAAAGAGAAGGCA
874581 TCCTGCTCTTTGAGGAC
1 TCCTGCTCTTTGAGGAC
874598 AAAAAGGCGA
Statistics
Matches: 171, Mismatches: 19, Indels: 13
0.84 0.09 0.06
Matches are distributed among these distances:
54 21 0.12
55 1 0.01
57 1 0.01
59 4 0.02
60 22 0.13
61 118 0.69
62 4 0.02
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (61 bp):
TCCTGCTCTTTGAGGACTGAAAAGTGCCACCAACTTGTGTGGGCTTTGAAAAGAGAAGGCA
Found at i:874698 original size:94 final size:93
Alignment explanation
Indices: 874514--874691 Score: 252
Period size: 94 Copynumber: 1.9 Consensus size: 93
874504 GTGGGCTTTA
* * * * *
874514 AAAGGAGAAGGCGTCCTGCTCTTTGAGGATTGAAGGTGCCATCAGCTTGTGTGGTCGTTAAAAGG
1 AAAGGAGAAGGCGTCCTACTCTTTGAGGATAGAAGGTGCCACCAGATTGTGTGGGCGTTAAAAGG
874579 CATCCTGCTCTTTGAGGACAAAAAGGCG
66 CATCCTGCTCTTTGAGGACAAAAAGGCG
* *
874607 AAAGGAG-AGAGCGTCCTACTCTTTGAGGACTAGAGGGTGCCACCA-ATTCGTGTGGGCTTTAAA
1 AAAGGAGAAG-GCGTCCTACTCTTTGAGGA-TAGAAGGTGCCACCAGATT-GTGTGGGCGTTAAA
874670 AGGCATCCTGCTCTTTGAGGAC
63 AGGCATCCTGCTCTTTGAGGAC
874692 TGAAAGGTGC
Statistics
Matches: 75, Mismatches: 7, Indels: 5
0.86 0.08 0.06
Matches are distributed among these distances:
92 2 0.03
93 27 0.36
94 46 0.61
ACGTcount: A:0.25, C:0.20, G:0.30, T:0.25
Consensus pattern (93 bp):
AAAGGAGAAGGCGTCCTACTCTTTGAGGATAGAAGGTGCCACCAGATTGTGTGGGCGTTAAAAGG
CATCCTGCTCTTTGAGGACAAAAAGGCG
Found at i:874715 original size:55 final size:54
Alignment explanation
Indices: 874620--874752 Score: 178
Period size: 55 Copynumber: 2.4 Consensus size: 54
874610 GGAGAGAGCG
* *
874620 TCCTACTCTTTGAGGACTAGAGGGTGCCACCAATTCGTGTGGGCTTTAAAAGGCA
1 TCCTGCTCTTTGAGGACTA-AAGGTGCCACCAATTCGTGTGGGCTTTAAAAGGCA
* *
874675 TCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTT-GTGTGGGCTTTGAAAGGTA
1 TCCTGCTCTTTGAGGACT-AAAGGTGCCACCAA-TTCGTGTGGGCTTTAAAAGGCA
* *
874730 TCTTGCTTTTTGAGGACTAAAGG
1 TCCTGCTCTTTGAGGACTAAAGG
874753 GTGAAAGGAG
Statistics
Matches: 70, Mismatches: 6, Indels: 5
0.86 0.07 0.06
Matches are distributed among these distances:
54 5 0.07
55 62 0.89
56 3 0.04
ACGTcount: A:0.23, C:0.20, G:0.28, T:0.30
Consensus pattern (54 bp):
TCCTGCTCTTTGAGGACTAAAGGTGCCACCAATTCGTGTGGGCTTTAAAAGGCA
Found at i:874762 original size:149 final size:148
Alignment explanation
Indices: 874466--874819 Score: 460
Period size: 149 Copynumber: 2.3 Consensus size: 148
874456 AAAGAAAGCA
* * *
874466 TCCTGCTCTTTGAGGACT-GAAAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGAGAAGGCGTCC
1 TCCTACTCTTTGAGGACTAG-AAGGTGCCACCAACTTGTGTGGGCTTT---A--A-AAGGCATCC
* * * *
874530 TGCTCTTTGAGGATTGAAGGTGCCATCAGCTTGTGTGGTCGTTAAAAGGCATCCTGCTCTTTGAG
59 TGCTCTTTGAGGACTGAAGGTGCCACCAACTTGTGTGGGCGTTAAAAGGCATCCTGCTCTTTGAG
874595 GACAAAAAGGCGAAAGGAGAGAGCG
124 GACAAAAAGGCGAAAGGAGAGAGCG
*
874620 TCCTACTCTTTGAGGACTAGAGGGTGCCACCAA-TTCGTGTGGGCTTTAAAAGGCATCCTGCTCT
1 TCCTACTCTTTGAGGACTAGAAGGTGCCACCAACTT-GTGTGGGCTTTAAAAGGCATCCTGCTCT
* * * * * *
874684 TTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGGTATCTTGCTTTTTGAGGACTA
65 TTGAGGACTG-AAGGTGCCACCAACTTGTGTGGGCGTTAAAAGGCATCCTGCTCTTTGAGGACAA
* *
874749 AAGGGTGAAAGGAGAGAGCG
129 AAAGGCGAAAGGAGAGAGCG
*
874769 TCCTGCTCTTTGAGGACTAGAAGGTGCCACCAACTTGTGTGGGCTTTAAAA
1 TCCTACTCTTTGAGGACTAGAAGGTGCCACCAACTTGTGTGGGCTTTAAAA
874820 AGAAAAGGTG
Statistics
Matches: 178, Mismatches: 18, Indels: 13
0.85 0.09 0.06
Matches are distributed among these distances:
148 23 0.13
149 110 0.62
150 2 0.01
151 1 0.01
153 2 0.01
154 39 0.22
155 1 0.01
ACGTcount: A:0.25, C:0.19, G:0.30, T:0.27
Consensus pattern (148 bp):
TCCTACTCTTTGAGGACTAGAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGGCATCCTGCTCTT
TGAGGACTGAAGGTGCCACCAACTTGTGTGGGCGTTAAAAGGCATCCTGCTCTTTGAGGACAAAA
AGGCGAAAGGAGAGAGCG
Found at i:874863 original size:61 final size:61
Alignment explanation
Indices: 874766--875001 Score: 318
Period size: 61 Copynumber: 3.9 Consensus size: 61
874756 AAAGGAGAGA
*
874766 GCGTCCTGCTCTTTGAGGACTAGAAGGTGCCACCAACTTGTGTGGGCTTTAAAAAGAAAAG
1 GCGTCCTGCTCTTTGAGGACTGGAAGGTGCCACCAACTTGTGTGGGCTTTAAAAAGAAAAG
* * * *
874827 GTGTCCTACCCTTTGAGGA-TGGGAAGGTGCCACCAACTTGTGTGAGCTTTGCAAAAAG-AAA-
1 GCGTCCTGCTCTTTGAGGACT-GGAAGGTGCCACCAACTTGTGTGGGCTTT--AAAAAGAAAAG
* * * * *
874888 GCATCCTGCTCTTTGAGGACTGAAAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGAGAAG
1 GCGTCCTGCTCTTTGAGGACTGGAAGGTGCCACCAACTTGTGTGGGCTTTAAAAAGAAAAG
*
874949 GCGTCCTGCTCTTTGAGGACT-GAAGGTGCCACCAGCTTGTGTGGGCTTTAAAA
1 GCGTCCTGCTCTTTGAGGACTGGAAGGTGCCACCAACTTGTGTGGGCTTTAAAA
875002 GGCATCCTGC
Statistics
Matches: 151, Mismatches: 18, Indels: 13
0.83 0.10 0.07
Matches are distributed among these distances:
59 5 0.03
60 32 0.21
61 104 0.69
62 4 0.03
63 6 0.04
ACGTcount: A:0.26, C:0.20, G:0.28, T:0.25
Consensus pattern (61 bp):
GCGTCCTGCTCTTTGAGGACTGGAAGGTGCCACCAACTTGTGTGGGCTTTAAAAAGAAAAG
Found at i:875133 original size:425 final size:425
Alignment explanation
Indices: 874343--875273 Score: 1560
Period size: 425 Copynumber: 2.2 Consensus size: 425
874333 AAGGAAATGT
* * *
874343 GTCCTGCTCTTTGAGGACT-GAAAAGTGCCACCAACTCGTGTGGGCTTTGAAAAGAAAAGGCATC
1 GTCCTGCTCTTTGAGGACTAG-AAGGTGCCACCAACTTGTGTGGGCTTTAAAAAGAAAAGGCATC
*
874407 CTGCCCTTTGAGGACTGGAAGGTGCCACCAACTTGTGTGGGCTTTGCAAAAAGAAAGCATCCTGC
65 CTGCCCTTTGAGGACTGGAAGGTGCCACCAACTTGTGTGAGCTTTGCAAAAAGAAAGCATCCTGC
874472 TCTTTGAGGACTGAAAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGAGAAGGCGTCCTGCTCTT
130 TCTTTGAGGACTGAAAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGAGAAGGCGTCCTGCTCTT
* * *
874537 TGAGGATTGAAGGTGCCATCAGCTTGTGTGGTCGTTAAAAGGCATCCTGCTCTTTGAGGACAAAA
195 TGAGGACTGAAGGTGCCACCAGCTTGTGTGGGCGTTAAAAGGCATCCTGCTCTTTGAGGACAAAA
* * * *
874602 AGGCGAAAGGAGAGAGCGTCCTACTCTTTGAGGACTAGAGGGTGCCACCAATTCGTGTGGGCTTT
260 AGGCGAAAGGAGAGAGCATCCTACTCTTTGAGGACTAGAGGGTGCCACCAACTCATATGGGCTTT
* * * *
874667 AAAAGGCATCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGGTATC
325 AAAAGGCATCCTACTCTTTAAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGGCACC
* *
874732 TTGCTTTTTGAGGACTAAAGGGTGAAAGGAGAGAGC
390 CTGCTCTTTGAGGACTAAAGGGTGAAAGGAGAGAGC
**
874768 GTCCTGCTCTTTGAGGACTAGAAGGTGCCACCAACTTGTGTGGGCTTTAAAAAGAAAAGGTGTCC
1 GTCCTGCTCTTTGAGGACTAGAAGGTGCCACCAACTTGTGTGGGCTTTAAAAAGAAAAGGCATCC
*
874833 TACCCTTTGAGGA-TGGGAAGGTGCCACCAACTTGTGTGAGCTTTGCAAAAAGAAAGCATCCTGC
66 TGCCCTTTGAGGACT-GGAAGGTGCCACCAACTTGTGTGAGCTTTGCAAAAAGAAAGCATCCTGC
874897 TCTTTGAGGACTGAAAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGAGAAGGCGTCCTGCTCTT
130 TCTTTGAGGACTGAAAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGAGAAGGCGTCCTGCTCTT
*
874962 TGAGGACTGAAGGTGCCACCAGCTTGTGTGGGCTTTAAAAGGCATCCTGCTCTTTGAGGACAAAA
195 TGAGGACTGAAGGTGCCACCAGCTTGTGTGGGCGTTAAAAGGCATCCTGCTCTTTGAGGACAAAA
* * *
875027 AGGCGAAAGGAGAGAGCATTCTGCTCTTTGAGGACTGGAGGGTGCCACCAACTCATATGGGCTTT
260 AGGCGAAAGGAGAGAGCATCCTACTCTTTGAGGACTAGAGGGTGCCACCAACTCATATGGGCTTT
** * *
875092 AAAAGGTGTTCTACTCTTTAAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGGCGCC
325 AAAAGGCATCCTACTCTTTAAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGGCACC
875157 CTGCTCTTTGAGGACTAAAGGGTGAAAGGAGAGAGC
390 CTGCTCTTTGAGGACTAAAGGGTGAAAGGAGAGAGC
*
875193 GTCCTGCTCTTTGAGGACTAGAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGGAAAAGGCATCC
1 GTCCTGCTCTTTGAGGACTAGAAGGTGCCACCAACTTGTGTGGGCTTTAAAAAGAAAAGGCATCC
*
875258 TGCTCTTTGAGGACTG
66 TGCCCTTTGAGGACTG
875274 AAAAGTGGAA
Statistics
Matches: 470, Mismatches: 33, Indels: 6
0.92 0.06 0.01
Matches are distributed among these distances:
424 1 0.00
425 467 0.99
426 2 0.00
ACGTcount: A:0.26, C:0.20, G:0.29, T:0.25
Consensus pattern (425 bp):
GTCCTGCTCTTTGAGGACTAGAAGGTGCCACCAACTTGTGTGGGCTTTAAAAAGAAAAGGCATCC
TGCCCTTTGAGGACTGGAAGGTGCCACCAACTTGTGTGAGCTTTGCAAAAAGAAAGCATCCTGCT
CTTTGAGGACTGAAAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGAGAAGGCGTCCTGCTCTTT
GAGGACTGAAGGTGCCACCAGCTTGTGTGGGCGTTAAAAGGCATCCTGCTCTTTGAGGACAAAAA
GGCGAAAGGAGAGAGCATCCTACTCTTTGAGGACTAGAGGGTGCCACCAACTCATATGGGCTTTA
AAAGGCATCCTACTCTTTAAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGGCACCC
TGCTCTTTGAGGACTAAAGGGTGAAAGGAGAGAGC
Found at i:875164 original size:55 final size:55
Alignment explanation
Indices: 875047--875177 Score: 156
Period size: 55 Copynumber: 2.4 Consensus size: 55
875037 AGAGAGCATT
* * * **
875047 CTGCTCTTTGAGGACTGGAGGGTGCCACCAACTCATATGGGCTTTAAAAGGTGTT
1 CTGCTCTTTGAGGACTGAAAGGTGCCACCAACTCATATGGGCTTTAAAAGGCGCC
* * ** * *
875102 CTACTCTTTAAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGGCGCC
1 CTGCTCTTTGAGGACTGAAAGGTGCCACCAACTCATATGGGCTTTAAAAGGCGCC
875157 CTGCTCTTTGAGGACT-AAAGG
1 CTGCTCTTTGAGGACTGAAAGG
875178 GTGAAAGGAG
Statistics
Matches: 63, Mismatches: 13, Indels: 1
0.82 0.17 0.01
Matches are distributed among these distances:
54 5 0.08
55 58 0.92
ACGTcount: A:0.23, C:0.21, G:0.28, T:0.27
Consensus pattern (55 bp):
CTGCTCTTTGAGGACTGAAAGGTGCCACCAACTCATATGGGCTTTAAAAGGCGCC
Found at i:875171 original size:149 final size:148
Alignment explanation
Indices: 874887--875246 Score: 443
Period size: 149 Copynumber: 2.4 Consensus size: 148
874877 GCAAAAAGAA
* ** * *
874887 AGCATCCTGCTCTTTGAGGACT-GAAAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGAGAAGGC
1 AGCATCCTGCTCTTTGAGGACTAG-AAGGTGCCACCAACTCATATGGGCTTT---A--A-AAGGT
* * * * *
874951 GTCCTGCTCTTTGAGGACTGAAGGTGCCACCAGCTTGTGTGGGCTTTAAAAGGCATCCTGCTCTT
59 GTTCTACTCTTTAAGGACTGAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGGCACCCTGCTCTT
875016 TGAGGACAAAAAGGCGAAAGGAGAG
124 TGAGGACAAAAAGGCGAAAGGAGAG
* * *
875041 AGCATTCTGCTCTTTGAGGACTGGAGGGTGCCACCAACTCATATGGGCTTTAAAAGGTGTTCTAC
1 AGCATCCTGCTCTTTGAGGACTAGAAGGTGCCACCAACTCATATGGGCTTTAAAAGGTGTTCTAC
* *
875106 TCTTTAAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGGCGCCCTGCTCTTTGAGGA
66 TCTTTAAGGACTG-AAGGTGCCACCAACTTGTGTGGGCTTTAAAAGGCACCCTGCTCTTTGAGGA
* * *
875171 CTAAAGGGTGAAAGGAGAG
130 CAAAAAGGCGAAAGGAGAG
* ** *
875190 AGCGTCCTGCTCTTTGAGGACTAGAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGG
1 AGCATCCTGCTCTTTGAGGACTAGAAGGTGCCACCAACTCATATGGGCTTTAAAAGG
875247 AAAAGGCATC
Statistics
Matches: 180, Mismatches: 24, Indels: 9
0.85 0.11 0.04
Matches are distributed among these distances:
148 21 0.12
149 114 0.63
151 1 0.01
154 43 0.24
155 1 0.01
ACGTcount: A:0.25, C:0.20, G:0.30, T:0.25
Consensus pattern (148 bp):
AGCATCCTGCTCTTTGAGGACTAGAAGGTGCCACCAACTCATATGGGCTTTAAAAGGTGTTCTAC
TCTTTAAGGACTGAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGGCACCCTGCTCTTTGAGGAC
AAAAAGGCGAAAGGAGAG
Found at i:876269 original size:1 final size:1
Alignment explanation
Indices: 876249--876321 Score: 65
Period size: 1 Copynumber: 73.0 Consensus size: 1
876239 CTTTTCTCTC
* * * * * * * * *
876249 TTTTTTCTTTGTTTTGTTTTTTTTGTTTTTTGTTTTTATTTTTTTTGTTTTTGTTTTTTTTTTGT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
876314 TTTTTTTT
1 TTTTTTTT
876322 AGAAGAGAAC
Statistics
Matches: 54, Mismatches: 18, Indels: 0
0.75 0.25 0.00
Matches are distributed among these distances:
1 54 1.00
ACGTcount: A:0.01, C:0.01, G:0.10, T:0.88
Consensus pattern (1 bp):
T
Found at i:876295 original size:31 final size:31
Alignment explanation
Indices: 876249--876321 Score: 103
Period size: 32 Copynumber: 2.3 Consensus size: 31
876239 CTTTTCTCTC
876249 TTTTTTCTTTGTTTTGTTTTT-TTTGTTTTTTG
1 TTTTTT-TTT-TTTTGTTTTTGTTTGTTTTTTG
*
876281 TTTTTATTTTTTTTGTTTTTGTTTTTTTTTTG
1 TTTTT-TTTTTTTTGTTTTTGTTTGTTTTTTG
876313 TTTTTTTTT
1 TTTTTTTTT
876322 AGAAGAGAAC
Statistics
Matches: 38, Mismatches: 1, Indels: 5
0.86 0.02 0.11
Matches are distributed among these distances:
31 14 0.37
32 23 0.61
33 1 0.03
ACGTcount: A:0.01, C:0.01, G:0.10, T:0.88
Consensus pattern (31 bp):
TTTTTTTTTTTTTGTTTTTGTTTGTTTTTTG
Found at i:876321 original size:15 final size:15
Alignment explanation
Indices: 876249--876321 Score: 92
Period size: 16 Copynumber: 4.6 Consensus size: 15
876239 CTTTTCTCTC
*
876249 TTTTTTCTTTGTTTTG
1 TTTTTT-TTTTTTTTG
876265 TTTTTTTTGTTTTTTG
1 TTTTTTTT-TTTTTTG
*
876281 TTTTTATTTTTTTTG
1 TTTTTTTTTTTTTTG
876296 TTTTTGTTTTTTTTTTG
1 -TTTT-TTTTTTTTTTG
876313 TTTTTTTTT
1 TTTTTTTTT
876322 AGAAGAGAAC
Statistics
Matches: 51, Mismatches: 3, Indels: 7
0.84 0.05 0.11
Matches are distributed among these distances:
15 14 0.27
16 27 0.53
17 10 0.20
ACGTcount: A:0.01, C:0.01, G:0.10, T:0.88
Consensus pattern (15 bp):
TTTTTTTTTTTTTTG
Found at i:876321 original size:21 final size:20
Alignment explanation
Indices: 876249--876321 Score: 92
Period size: 21 Copynumber: 3.5 Consensus size: 20
876239 CTTTTCTCTC
*
876249 TTTTTTCTTTGTTTTGTTTTT
1 TTTTTTTTTTGTTTT-TTTTT
*
876270 TTTGTTTTTTGTTTTTATTTT
1 TTTTTTTTTTGTTTTT-TTTT
*
876291 TTTTGTTTTTGTTTTTTTTT
1 TTTTTTTTTTGTTTTTTTTT
876311 TGTTTTTTTTT
1 T-TTTTTTTTT
876322 AGAAGAGAAC
Statistics
Matches: 45, Mismatches: 5, Indels: 4
0.83 0.09 0.07
Matches are distributed among these distances:
20 6 0.13
21 39 0.87
ACGTcount: A:0.01, C:0.01, G:0.10, T:0.88
Consensus pattern (20 bp):
TTTTTTTTTTGTTTTTTTTT
Found at i:889179 original size:107 final size:104
Alignment explanation
Indices: 888876--889184 Score: 323
Period size: 107 Copynumber: 2.9 Consensus size: 104
888866 TAATAAAAGT
* * *
888876 GGGTTGGAGTATCCCCTCA-GAAATAACGGGGTTGAAGTATCCCCGATTGTGAGAAATTAGAGTT
1 GGGTTGGAGTATCCCC-GATGAAATAACGGGGTTGGAGTATCCCCGATTGTGAAAAATT-GAGTT
* *
888940 TTGGAAATAAAATCGGGGTTGGAGTATCCCCTCGGAAATAACG
64 TTGGAAAT-AAA-CCGGGTTGGAGTATCCCCTCGAAAATAACG
* * * * * * ** *
888983 AGATTGGAATATCCCCGATGACATACCGGGGTTGGAGTATCCCCGATTATGAAAAATCAATATTT
1 GGGTTGGAGTATCCCCGATGAAATAACGGGGTTGGAGTATCCCCGATTGTGAAAAATTGA-GTTT
* * * * *
889048 TAGATATAAAGCCAGGGTTAGAGTATCCCTTCGAAAATAATG
65 TGGAAATAAA-CC-GGGTTGGAGTATCCCCTCGAAAATAACG
* * *
889090 GGGTTGGAGTATCCCCGATGAAATAACAGGATTGGAGTATCCCCAATTGTGAAAAATTGACGTTT
1 GGGTTGGAGTATCCCCGATGAAATAACGGGGTTGGAGTATCCCCGATTGTGAAAAATTGA-GTTT
889155 TGGAAATAGAACCGGGATTGGAGTATCCCC
65 TGGAAATA-AACCGGG-TTGGAGTATCCCC
889185 GAGATGAAAA
Statistics
Matches: 160, Mismatches: 37, Indels: 10
0.77 0.18 0.05
Matches are distributed among these distances:
106 9 0.06
107 149 0.93
108 2 0.01
ACGTcount: A:0.32, C:0.17, G:0.26, T:0.26
Consensus pattern (104 bp):
GGGTTGGAGTATCCCCGATGAAATAACGGGGTTGGAGTATCCCCGATTGTGAAAAATTGAGTTTT
GGAAATAAACCGGGTTGGAGTATCCCCTCGAAAATAACG
Found at i:894382 original size:52 final size:52
Alignment explanation
Indices: 894302--894421 Score: 213
Period size: 52 Copynumber: 2.3 Consensus size: 52
894292 AAAAGTTGTT
* *
894302 TGCATGTATCGATACATTTAATAGTGTATCGATACATCTGGGCAAATTTGCC
1 TGCATGTATCGATACATTTAATAATGTATCGATACATCTGGGCAAAATTGCC
*
894354 TGCATGTATCGATACATTTTATAATGTATCGATACATCTGGGCAAAATTGCC
1 TGCATGTATCGATACATTTAATAATGTATCGATACATCTGGGCAAAATTGCC
894406 TGCATGTATCGATACA
1 TGCATGTATCGATACA
894422 AAGATCAGTG
Statistics
Matches: 65, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
52 65 1.00
ACGTcount: A:0.30, C:0.17, G:0.18, T:0.34
Consensus pattern (52 bp):
TGCATGTATCGATACATTTAATAATGTATCGATACATCTGGGCAAAATTGCC
Found at i:894434 original size:52 final size:51
Alignment explanation
Indices: 894302--894441 Score: 201
Period size: 52 Copynumber: 2.7 Consensus size: 51
894292 AAAAGTTGTT
*
894302 TGCATGTATCGATACATTTAATAGTGTATCGATACATCTGGGCAAATTTGCC
1 TGCATGTATCGATACA-TTAATAGTGTATCGATACATCTGGGCAAAATTGCC
* *
894354 TGCATGTATCGATACATTTTATAATGTATCGATACATCTGGGCAAAATTGCC
1 TGCATGTATCGATACA-TTAATAGTGTATCGATACATCTGGGCAAAATTGCC
*
894406 TGCATGTATCGATACA-AAGATCAGTGTATCGATACA
1 TGCATGTATCGATACATTA-AT-AGTGTATCGATACA
894442 ATGTATCGAT
Statistics
Matches: 80, Mismatches: 6, Indels: 4
0.89 0.07 0.04
Matches are distributed among these distances:
51 2 0.03
52 78 0.98
ACGTcount: A:0.31, C:0.17, G:0.19, T:0.33
Consensus pattern (51 bp):
TGCATGTATCGATACATTAATAGTGTATCGATACATCTGGGCAAAATTGCC
Found at i:894448 original size:13 final size:13
Alignment explanation
Indices: 894430--894454 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
894420 CAAAGATCAG
894430 TGTATCGATACAA
1 TGTATCGATACAA
894443 TGTATCGATACA
1 TGTATCGATACA
894455 TTTGAGTAAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:894538 original size:13 final size:13
Alignment explanation
Indices: 894520--894544 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
894510 CAAAAAAATA
894520 TGTATCGATACAT
1 TGTATCGATACAT
894533 TGTATCGATACA
1 TGTATCGATACA
894545 ACATTTTATG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:894540 original size:33 final size:33
Alignment explanation
Indices: 894498--894564 Score: 98
Period size: 33 Copynumber: 2.0 Consensus size: 33
894488 AGTAGCTTAA
894498 ATTGTATCGATACAAAAAAATATGTATCGATAC
1 ATTGTATCGATACAAAAAAATATGTATCGATAC
* ***
894531 ATTGTATCGATACAACATTTTATGTATCGATAC
1 ATTGTATCGATACAAAAAAATATGTATCGATAC
894564 A
1 A
894565 AATCATTGAA
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
33 30 1.00
ACGTcount: A:0.40, C:0.13, G:0.12, T:0.34
Consensus pattern (33 bp):
ATTGTATCGATACAAAAAAATATGTATCGATAC
Found at i:894643 original size:21 final size:21
Alignment explanation
Indices: 894602--894643 Score: 66
Period size: 21 Copynumber: 2.0 Consensus size: 21
894592 GTTGGGACCT
*
894602 TGTATCGATACATTTTAACAA
1 TGTATCGATACATTTGAACAA
*
894623 TGTATCGATACATTTGGACAA
1 TGTATCGATACATTTGAACAA
894644 AAATGTAATT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.36, C:0.14, G:0.14, T:0.36
Consensus pattern (21 bp):
TGTATCGATACATTTGAACAA
Found at i:895238 original size:49 final size:49
Alignment explanation
Indices: 895166--895554 Score: 571
Period size: 49 Copynumber: 7.9 Consensus size: 49
895156 AAATTCAAGA
* *
895166 TGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGAAGG
1 TGCCAATATGCTGAGTCAAGGCCAGCGACATTGGACTTAAAGATGAAGG
* * *
895215 TGCCAATGTGCTGAGTCAAGGCCAGCTACATTGGACTTAAAGATGAAGA
1 TGCCAATATGCTGAGTCAAGGCCAGCGACATTGGACTTAAAGATGAAGG
* * *
895264 TGCCAATATGCTGATTCATGGCCAGCGATATTGGACTTAAAGATGAAGG
1 TGCCAATATGCTGAGTCAAGGCCAGCGACATTGGACTTAAAGATGAAGG
* * * *
895313 TGCCAATGTGCTGAGTCAAGGCCAGCTACATTGGACTTAAGGATGAAGA
1 TGCCAATATGCTGAGTCAAGGCCAGCGACATTGGACTTAAAGATGAAGG
* *
895362 TGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGAAGG
1 TGCCAATATGCTGAGTCAAGGCCAGCGACATTGGACTTAAAGATGAAGG
* * * *
895411 TGCCAATGTGCTGAGTCAAGGCCAGCTACATTGGACTTAAAGATGGAGA
1 TGCCAATATGCTGAGTCAAGGCCAGCGACATTGGACTTAAAGATGAAGG
* *
895460 TGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAAGATGAAGG
1 TGCCAATATGCTGAGTCAAGGCCAGCGACATTGGACTT-AAAGATGAAGG
* *
895510 TGCCAATGTGCTGAGTCAAGGCCAGCTACATTGGACTTAAAGATG
1 TGCCAATATGCTGAGTCAAGGCCAGCGACATTGGACTTAAAGATG
895555 GAAAAGGCCA
Statistics
Matches: 299, Mismatches: 40, Indels: 2
0.88 0.12 0.01
Matches are distributed among these distances:
49 256 0.86
50 43 0.14
ACGTcount: A:0.32, C:0.17, G:0.27, T:0.24
Consensus pattern (49 bp):
TGCCAATATGCTGAGTCAAGGCCAGCGACATTGGACTTAAAGATGAAGG
Found at i:895331 original size:98 final size:98
Alignment explanation
Indices: 895162--895554 Score: 750
Period size: 98 Copynumber: 4.0 Consensus size: 98
895152 GTGCAAATTC
895162 AAGATGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGAAGGTGCCAATGTGCT
1 AAGATGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGAAGGTGCCAATGTGCT
895227 GAGTCAAGGCCAGCTACATTGGACTTAAAGATG
66 GAGTCAAGGCCAGCTACATTGGACTTAAAGATG
*
895260 AAGATGCCAATATGCTGATTCATGGCCAGCGATATTGGACTTAAAGATGAAGGTGCCAATGTGCT
1 AAGATGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGAAGGTGCCAATGTGCT
*
895325 GAGTCAAGGCCAGCTACATTGGACTTAAGGATG
66 GAGTCAAGGCCAGCTACATTGGACTTAAAGATG
895358 AAGATGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGAAGGTGCCAATGTGCT
1 AAGATGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGAAGGTGCCAATGTGCT
895423 GAGTCAAGGCCAGCTACATTGGACTTAAAGATG
66 GAGTCAAGGCCAGCTACATTGGACTTAAAGATG
*
895456 GAGATGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAAGATGAAGGTGCCAATGTGC
1 AAGATGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTT-AAAGATGAAGGTGCCAATGTGC
895521 TGAGTCAAGGCCAGCTACATTGGACTTAAAGATG
65 TGAGTCAAGGCCAGCTACATTGGACTTAAAGATG
895555 GAAAAGGCCA
Statistics
Matches: 289, Mismatches: 5, Indels: 1
0.98 0.02 0.00
Matches are distributed among these distances:
98 233 0.81
99 56 0.19
ACGTcount: A:0.32, C:0.17, G:0.27, T:0.24
Consensus pattern (98 bp):
AAGATGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGAAGGTGCCAATGTGCT
GAGTCAAGGCCAGCTACATTGGACTTAAAGATG
Found at i:895680 original size:32 final size:33
Alignment explanation
Indices: 895584--895676 Score: 163
Period size: 33 Copynumber: 2.8 Consensus size: 33
895574 GGCTGAGAGG
895584 GGTTGCCACCGACTTGTGTGGGCTTTGGAAGAA
1 GGTTGCCACCGACTTGTGTGGGCTTTGGAAGAA
895617 GGTTGCCACCGACTTGTGTGGGCTTTAGGAAG-A
1 GGTTGCCACCGACTTGTGTGGGCTTT-GGAAGAA
895650 -GTTGCCACCGACTTGTGTGGGCTTTGG
1 GGTTGCCACCGACTTGTGTGGGCTTTGG
895677 GAAGGAAAAA
Statistics
Matches: 59, Mismatches: 0, Indels: 4
0.94 0.00 0.06
Matches are distributed among these distances:
31 2 0.03
32 25 0.42
33 27 0.46
34 5 0.08
ACGTcount: A:0.15, C:0.19, G:0.37, T:0.29
Consensus pattern (33 bp):
GGTTGCCACCGACTTGTGTGGGCTTTGGAAGAA
Found at i:895705 original size:36 final size:36
Alignment explanation
Indices: 895681--896131 Score: 586
Period size: 36 Copynumber: 12.9 Consensus size: 36
895671 CTTTGGGAAG
* *
895681 GAAAAAAGA-TGCCACGGAGTTGTGGAC-TTAAAAG
1 GAAAAAAGAGTGCCACGGAGTTGTGGGCTTTAAAAA
*
895715 GGAAAAAGAGTGCCACGGAGTTGTGGGCTTT-AAAA
1 GAAAAAAGAGTGCCACGGAGTTGTGGGCTTTAAAAA
* *
895750 G-AAAAA-AGTGCCACAGAGTTGTGGGCTTTGAAAAG
1 GAAAAAAGAGTGCCACGGAGTTGTGGGCTTT-AAAAA
* *
895785 GGAAAAAGAGTGCCACGGAGTTGTGGGCTTT-AAAC
1 GAAAAAAGAGTGCCACGGAGTTGTGGGCTTTAAAAA
* *
895820 GGAAAAAG-GTGCCACGGAGTTGTGGGCTTTAAAAG
1 GAAAAAAGAGTGCCACGGAGTTGTGGGCTTTAAAAA
* *
895855 GGAAAAAGAGTGCCACGGAGTTGTGGGCTTTAAACA
1 GAAAAAAGAGTGCCACGGAGTTGTGGGCTTTAAAAA
*
895891 G-AAAAAG-GTGCCACGGAGTTGTGGGCTTTGAAAA
1 GAAAAAAGAGTGCCACGGAGTTGTGGGCTTTAAAAA
* * *
895925 GAAGAAAGAGTGCCACGAAGTTGTGGGCTTTGAAAA
1 GAAAAAAGAGTGCCACGGAGTTGTGGGCTTTAAAAA
*
895961 GAAGAAAGAGTGCCACGGAGTTGTGGGCTTTAAAAA
1 GAAAAAAGAGTGCCACGGAGTTGTGGGCTTTAAAAA
* *
895997 G-AAGAAG-GTGCCACGGAGTTGTGGGCTTTGAAAA
1 GAAAAAAGAGTGCCACGGAGTTGTGGGCTTTAAAAA
* * *
896031 GAAGAAAGAGTGCCACGAAGTTGTGGGCTTTGAAAA
1 GAAAAAAGAGTGCCACGGAGTTGTGGGCTTTAAAAA
*
896067 GAAGAAAGAGTGCCACGGAGTTGTGGGCTTTAAAAA
1 GAAAAAAGAGTGCCACGGAGTTGTGGGCTTTAAAAA
* *
896103 G-AAGAAG-GTGCCACGGAGTTGTGGACTTT
1 GAAAAAAGAGTGCCACGGAGTTGTGGGCTTT
896132 GAGACAAAAT
Statistics
Matches: 378, Mismatches: 27, Indels: 24
0.88 0.06 0.06
Matches are distributed among these distances:
33 22 0.06
34 109 0.29
35 70 0.19
36 155 0.41
37 22 0.06
ACGTcount: A:0.34, C:0.12, G:0.34, T:0.20
Consensus pattern (36 bp):
GAAAAAAGAGTGCCACGGAGTTGTGGGCTTTAAAAA
Found at i:895756 original size:70 final size:70
Alignment explanation
Indices: 895681--896133 Score: 602
Period size: 70 Copynumber: 6.5 Consensus size: 70
895671 CTTTGGGAAG
*
895681 GAAAAAAGATGCCACGGAGTTGTGGAC-TT-AAAAGGGAAAAAGAGTGCCACGGAGTTGTGGGCT
1 GAAAAAAGATGCCACGGAGTTGTGGGCTTTGAAAA-GGAAAAAGAGTGCCACGGAGTTGTGGGCT
895744 TTAAAA
65 TTAAAA
*
895750 GAAAAAAG-TGCCACAGAGTTGTGGGCTTTGAAAAGGGAAAAAGAGTGCCACGGAGTTGTGGGCT
1 GAAAAAAGATGCCACGGAGTTGTGGGCTTTGAAAA-GGAAAAAGAGTGCCACGGAGTTGTGGGCT
*
895814 TTAAAC
65 TTAAAA
* *
895820 GGAAAAAGGTGCCACGGAGTTGTGGGCTTT-AAAAGGGAAAAAGAGTGCCACGGAGTTGTGGGCT
1 GAAAAAAGATGCCACGGAGTTGTGGGCTTTGAAAA-GGAAAAAGAGTGCCACGGAGTTGTGGGCT
895884 TTAAACA
65 TTAAA-A
* *
895891 G-AAAAAGGTGCCACGGAGTTGTGGGCTTTGAAAA-GAAGAAAGAGTGCCACGAAGTTGTGGGCT
1 GAAAAAAGATGCCACGGAGTTGTGGGCTTTGAAAAGGAA-AAAGAGTGCCACGGAGTTGTGGGCT
895954 TTGAAAA
65 TT-AAAA
* * *
895961 GAAGAAAGAGTGCCACGGAGTTGTGGGCTTT-AAAAAGAAGAAG-GTGCCACGGAGTTGTGGGCT
1 GAAAAAAGA-TGCCACGGAGTTGTGGGCTTTGAAAAGGAAAAAGAGTGCCACGGAGTTGTGGGCT
896024 TTGAAAA
65 TT-AAAA
* *
896031 GAAGAAAGAGTGCCACGAAGTTGTGGGCTTTGAAAA-GAAGAAAGAGTGCCACGGAGTTGTGGGC
1 GAAAAAAGA-TGCCACGGAGTTGTGGGCTTTGAAAAGGAA-AAAGAGTGCCACGGAGTTGTGGGC
896095 TTTAAAA
64 TTTAAAA
* * *
896102 -AGAAGAAGGTGCCACGGAGTTGTGGACTTTGA
1 GA-AAAAAGATGCCACGGAGTTGTGGGCTTTGA
896134 GACAAAATGC
Statistics
Matches: 352, Mismatches: 18, Indels: 27
0.89 0.05 0.07
Matches are distributed among these distances:
68 16 0.05
69 13 0.04
70 222 0.63
71 55 0.16
72 46 0.13
ACGTcount: A:0.34, C:0.12, G:0.34, T:0.20
Consensus pattern (70 bp):
GAAAAAAGATGCCACGGAGTTGTGGGCTTTGAAAAGGAAAAAGAGTGCCACGGAGTTGTGGGCTT
TAAAA
Found at i:895970 original size:106 final size:103
Alignment explanation
Indices: 895683--896133 Score: 642
Period size: 106 Copynumber: 4.3 Consensus size: 103
895673 TTGGGAAGGA
* * *
895683 AAAAAGATGCCACGGAGTTGTGGAC-TT-AAAAGGGAAAAAGAGTGCCACGGAGTTGTGGGCTTT
1 AAAAAGGTGCCACGGAGTTGTGGGCTTTGAAAA--GAAAAAGAGTGCCACGAAGTTGTGGGCTTT
* *
895746 AAAAGAAAAA-AGTGCCACAGAGTTGTGGGCTTTGAAAAGGG
64 AAAAGAAAAAGAGTGCCACGGAGTTGTGGGCTTT-AAAA-AG
* *
895787 AAAAAGAGTGCCACGGAGTTGTGGGCTTT-AAACGGAAAAAG-GTGCCACGGAGTTGTGGGCTTT
1 AAAAAG-GTGCCACGGAGTTGTGGGCTTTGAAA-AGAAAAAGAGTGCCACGAAGTTGTGGGCTTT
*
895850 AAAAGGGAAAAAGAGTGCCACGGAGTTGTGGGCTTTAAACAG
64 AAAA--GAAAAAGAGTGCCACGGAGTTGTGGGCTTTAAAAAG
895892 AAAAAGGTGCCACGGAGTTGTGGGCTTTGAAAAGAAGAAAGAGTGCCACGAAGTTGTGGGCTTTG
1 AAAAAGGTGCCACGGAGTTGTGGGCTTTGAAAAGAA-AAAGAGTGCCACGAAGTTGTGGGCTTT-
895957 AAAAGAAGAAAGAGTGCCACGGAGTTGTGGGCTTTAAAAAG
64 AAAAGAA-AAAGAGTGCCACGGAGTTGTGGGCTTTAAAAAG
*
895998 AAGAAGGTGCCACGGAGTTGTGGGCTTTGAAAAGAAGAAAGAGTGCCACGAAGTTGTGGGCTTTG
1 AAAAAGGTGCCACGGAGTTGTGGGCTTTGAAAAGAA-AAAGAGTGCCACGAAGTTGTGGGCTTT-
896063 AAAAGAAGAAAGAGTGCCACGGAGTTGTGGGCTTTAAAAAG
64 AAAAGAA-AAAGAGTGCCACGGAGTTGTGGGCTTTAAAAAG
* *
896104 AAGAAGGTGCCACGGAGTTGTGGACTTTGA
1 AAAAAGGTGCCACGGAGTTGTGGGCTTTGA
896134 GACAAAATGC
Statistics
Matches: 325, Mismatches: 11, Indels: 20
0.91 0.03 0.06
Matches are distributed among these distances:
104 57 0.18
105 41 0.13
106 201 0.62
107 26 0.08
ACGTcount: A:0.34, C:0.12, G:0.34, T:0.20
Consensus pattern (103 bp):
AAAAAGGTGCCACGGAGTTGTGGGCTTTGAAAAGAAAAAGAGTGCCACGAAGTTGTGGGCTTTAA
AAGAAAAAGAGTGCCACGGAGTTGTGGGCTTTAAAAAG
Found at i:896191 original size:62 final size:63
Alignment explanation
Indices: 896077--896255 Score: 199
Period size: 62 Copynumber: 2.8 Consensus size: 63
896067 GAAGAAAGAG
* * * * *
896077 TGCCACGGAGTTGTGGGCTTTAAAAAGAAGAAGG-TGCCACGGAGTTGTGGACTTTGAGACA-A-
1 TGCCACTGAGTCGTGGACTTT--AAAG-AGAAGGATGCCACTGAGTCGTGGACTTTGAG-CAGAG
896139 AA
62 AA
* *
896141 TGCCACTGAGTCGTGGACTTTAAAGAGAAGGATGCCACTGCGTCGTGGACTTTGAGCAGAGAT
1 TGCCACTGAGTCGTGGACTTTAAAGAGAAGGATGCCACTGAGTCGTGGACTTTGAGCAGAGAA
896204 TGCCACTGAGTCGTGGACTTT---GAGAAGAGATTGCCACTGAGTCGTGGACTTT
1 TGCCACTGAGTCGTGGACTTTAAAGAGAAG-GA-TGCCACTGAGTCGTGGACTTT
896256 TTTTGACTTT
Statistics
Matches: 102, Mismatches: 8, Indels: 12
0.84 0.07 0.10
Matches are distributed among these distances:
60 6 0.06
61 10 0.10
62 46 0.45
63 22 0.22
64 18 0.18
ACGTcount: A:0.26, C:0.17, G:0.32, T:0.25
Consensus pattern (63 bp):
TGCCACTGAGTCGTGGACTTTAAAGAGAAGGATGCCACTGAGTCGTGGACTTTGAGCAGAGAA
Found at i:896211 original size:31 final size:31
Alignment explanation
Indices: 896111--896255 Score: 172
Period size: 31 Copynumber: 4.7 Consensus size: 31
896101 AAGAAGAAGG
* * *
896111 TGCCACGGAGTTGTGGACTTTGAGACA-A-AA
1 TGCCACTGAGTCGTGGACTTTGAG-CAGAGAT
*
896141 TGCCACTGAGTCGTGGACTTTAAAG-AGAAGGA-
1 TGCCACTGAGTCGTGGACTTT-GAGCAG-A-GAT
*
896173 TGCCACTGCGTCGTGGACTTTGAGCAGAGAT
1 TGCCACTGAGTCGTGGACTTTGAGCAGAGAT
*
896204 TGCCACTGAGTCGTGGACTTTGAGAAGAGAT
1 TGCCACTGAGTCGTGGACTTTGAGCAGAGAT
896235 TGCCACTGAGTCGTGGACTTT
1 TGCCACTGAGTCGTGGACTTT
896256 TTTTGACTTT
Statistics
Matches: 101, Mismatches: 7, Indels: 13
0.83 0.06 0.11
Matches are distributed among these distances:
29 1 0.01
30 21 0.21
31 56 0.55
32 22 0.22
33 1 0.01
ACGTcount: A:0.25, C:0.19, G:0.31, T:0.26
Consensus pattern (31 bp):
TGCCACTGAGTCGTGGACTTTGAGCAGAGAT
Found at i:896290 original size:8 final size:9
Alignment explanation
Indices: 896265--896289 Score: 50
Period size: 9 Copynumber: 2.8 Consensus size: 9
896255 TTTTTGACTT
896265 TTTTTTTTA
1 TTTTTTTTA
896274 TTTTTTTTA
1 TTTTTTTTA
896283 TTTTTTT
1 TTTTTTT
896290 AAAAAAAGGT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 16 1.00
ACGTcount: A:0.08, C:0.00, G:0.00, T:0.92
Consensus pattern (9 bp):
TTTTTTTTA
Found at i:904586 original size:52 final size:52
Alignment explanation
Indices: 904506--904625 Score: 213
Period size: 52 Copynumber: 2.3 Consensus size: 52
904496 AAAAGTTGTT
* *
904506 TGCATGTATCGATACATTTAATAGTGTATCGATACATCTGGGCAAATTTGCC
1 TGCATGTATCGATACATTTAATAATGTATCGATACATCTGGGCAAAATTGCC
*
904558 TGCATGTATCGATACATTTTATAATGTATCGATACATCTGGGCAAAATTGCC
1 TGCATGTATCGATACATTTAATAATGTATCGATACATCTGGGCAAAATTGCC
904610 TGCATGTATCGATACA
1 TGCATGTATCGATACA
904626 AAGATCAGTG
Statistics
Matches: 65, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
52 65 1.00
ACGTcount: A:0.30, C:0.17, G:0.18, T:0.34
Consensus pattern (52 bp):
TGCATGTATCGATACATTTAATAATGTATCGATACATCTGGGCAAAATTGCC
Found at i:904638 original size:52 final size:51
Alignment explanation
Indices: 904506--904645 Score: 201
Period size: 52 Copynumber: 2.7 Consensus size: 51
904496 AAAAGTTGTT
*
904506 TGCATGTATCGATACATTTAATAGTGTATCGATACATCTGGGCAAATTTGCC
1 TGCATGTATCGATACA-TTAATAGTGTATCGATACATCTGGGCAAAATTGCC
* *
904558 TGCATGTATCGATACATTTTATAATGTATCGATACATCTGGGCAAAATTGCC
1 TGCATGTATCGATACA-TTAATAGTGTATCGATACATCTGGGCAAAATTGCC
*
904610 TGCATGTATCGATACA-AAGATCAGTGTATCGATACA
1 TGCATGTATCGATACATTA-AT-AGTGTATCGATACA
904646 ATGTATCGAT
Statistics
Matches: 80, Mismatches: 6, Indels: 4
0.89 0.07 0.04
Matches are distributed among these distances:
51 2 0.03
52 78 0.98
ACGTcount: A:0.31, C:0.17, G:0.19, T:0.33
Consensus pattern (51 bp):
TGCATGTATCGATACATTAATAGTGTATCGATACATCTGGGCAAAATTGCC
Found at i:904652 original size:13 final size:13
Alignment explanation
Indices: 904634--904658 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
904624 CAAAGATCAG
904634 TGTATCGATACAA
1 TGTATCGATACAA
904647 TGTATCGATACA
1 TGTATCGATACA
904659 TTTGAGTAAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:904742 original size:13 final size:13
Alignment explanation
Indices: 904724--904748 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
904714 CAAAAAAATA
904724 TGTATCGATACAT
1 TGTATCGATACAT
904737 TGTATCGATACA
1 TGTATCGATACA
904749 ACATTTTATG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:904744 original size:33 final size:33
Alignment explanation
Indices: 904702--904768 Score: 98
Period size: 33 Copynumber: 2.0 Consensus size: 33
904692 AGTAGCTTAA
904702 ATTGTATCGATACAAAAAAATATGTATCGATAC
1 ATTGTATCGATACAAAAAAATATGTATCGATAC
* ***
904735 ATTGTATCGATACAACATTTTATGTATCGATAC
1 ATTGTATCGATACAAAAAAATATGTATCGATAC
904768 A
1 A
904769 AATCATTGAA
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
33 30 1.00
ACGTcount: A:0.40, C:0.13, G:0.12, T:0.34
Consensus pattern (33 bp):
ATTGTATCGATACAAAAAAATATGTATCGATAC
Found at i:904847 original size:21 final size:21
Alignment explanation
Indices: 904806--904847 Score: 66
Period size: 21 Copynumber: 2.0 Consensus size: 21
904796 GTTGGGACCT
*
904806 TGTATCGATACATTTTAACAA
1 TGTATCGATACATTTGAACAA
*
904827 TGTATCGATACATTTGGACAA
1 TGTATCGATACATTTGAACAA
904848 AAATGTAATT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.36, C:0.14, G:0.14, T:0.36
Consensus pattern (21 bp):
TGTATCGATACATTTGAACAA
Found at i:905442 original size:49 final size:49
Alignment explanation
Indices: 905370--905758 Score: 571
Period size: 49 Copynumber: 7.9 Consensus size: 49
905360 AAATTCAAGA
* *
905370 TGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGAAGG
1 TGCCAATATGCTGAGTCAAGGCCAGCGACATTGGACTTAAAGATGAAGG
* * *
905419 TGCCAATGTGCTGAGTCAAGGCCAGCTACATTGGACTTAAAGATGAAGA
1 TGCCAATATGCTGAGTCAAGGCCAGCGACATTGGACTTAAAGATGAAGG
* * *
905468 TGCCAATATGCTGATTCATGGCCAGCGATATTGGACTTAAAGATGAAGG
1 TGCCAATATGCTGAGTCAAGGCCAGCGACATTGGACTTAAAGATGAAGG
* * * *
905517 TGCCAATGTGCTGAGTCAAGGCCAGCTACATTGGACTTAAGGATGAAGA
1 TGCCAATATGCTGAGTCAAGGCCAGCGACATTGGACTTAAAGATGAAGG
* *
905566 TGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGAAGG
1 TGCCAATATGCTGAGTCAAGGCCAGCGACATTGGACTTAAAGATGAAGG
* * * *
905615 TGCCAATGTGCTGAGTCAAGGCCAGCTACATTGGACTTAAAGATGGAGA
1 TGCCAATATGCTGAGTCAAGGCCAGCGACATTGGACTTAAAGATGAAGG
* *
905664 TGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAAGATGAAGG
1 TGCCAATATGCTGAGTCAAGGCCAGCGACATTGGACTT-AAAGATGAAGG
* *
905714 TGCCAATGTGCTGAGTCAAGGCCAGCTACATTGGACTTAAAGATG
1 TGCCAATATGCTGAGTCAAGGCCAGCGACATTGGACTTAAAGATG
905759 GAAAAGGCCA
Statistics
Matches: 299, Mismatches: 40, Indels: 2
0.88 0.12 0.01
Matches are distributed among these distances:
49 256 0.86
50 43 0.14
ACGTcount: A:0.32, C:0.17, G:0.27, T:0.24
Consensus pattern (49 bp):
TGCCAATATGCTGAGTCAAGGCCAGCGACATTGGACTTAAAGATGAAGG
Found at i:905535 original size:98 final size:98
Alignment explanation
Indices: 905366--905758 Score: 750
Period size: 98 Copynumber: 4.0 Consensus size: 98
905356 GTGCAAATTC
905366 AAGATGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGAAGGTGCCAATGTGCT
1 AAGATGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGAAGGTGCCAATGTGCT
905431 GAGTCAAGGCCAGCTACATTGGACTTAAAGATG
66 GAGTCAAGGCCAGCTACATTGGACTTAAAGATG
*
905464 AAGATGCCAATATGCTGATTCATGGCCAGCGATATTGGACTTAAAGATGAAGGTGCCAATGTGCT
1 AAGATGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGAAGGTGCCAATGTGCT
*
905529 GAGTCAAGGCCAGCTACATTGGACTTAAGGATG
66 GAGTCAAGGCCAGCTACATTGGACTTAAAGATG
905562 AAGATGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGAAGGTGCCAATGTGCT
1 AAGATGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGAAGGTGCCAATGTGCT
905627 GAGTCAAGGCCAGCTACATTGGACTTAAAGATG
66 GAGTCAAGGCCAGCTACATTGGACTTAAAGATG
*
905660 GAGATGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAAGATGAAGGTGCCAATGTGC
1 AAGATGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTT-AAAGATGAAGGTGCCAATGTGC
905725 TGAGTCAAGGCCAGCTACATTGGACTTAAAGATG
65 TGAGTCAAGGCCAGCTACATTGGACTTAAAGATG
905759 GAAAAGGCCA
Statistics
Matches: 289, Mismatches: 5, Indels: 1
0.98 0.02 0.00
Matches are distributed among these distances:
98 233 0.81
99 56 0.19
ACGTcount: A:0.32, C:0.17, G:0.27, T:0.24
Consensus pattern (98 bp):
AAGATGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGAAGGTGCCAATGTGCT
GAGTCAAGGCCAGCTACATTGGACTTAAAGATG
Found at i:905884 original size:32 final size:33
Alignment explanation
Indices: 905788--905880 Score: 163
Period size: 33 Copynumber: 2.8 Consensus size: 33
905778 GGCTGAGAGG
905788 GGTTGCCACCGACTTGTGTGGGCTTTGGAAGAA
1 GGTTGCCACCGACTTGTGTGGGCTTTGGAAGAA
905821 GGTTGCCACCGACTTGTGTGGGCTTTAGGAAG-A
1 GGTTGCCACCGACTTGTGTGGGCTTT-GGAAGAA
905854 -GTTGCCACCGACTTGTGTGGGCTTTGG
1 GGTTGCCACCGACTTGTGTGGGCTTTGG
905881 GAAGGAAAAA
Statistics
Matches: 59, Mismatches: 0, Indels: 4
0.94 0.00 0.06
Matches are distributed among these distances:
31 2 0.03
32 25 0.42
33 27 0.46
34 5 0.08
ACGTcount: A:0.15, C:0.19, G:0.37, T:0.29
Consensus pattern (33 bp):
GGTTGCCACCGACTTGTGTGGGCTTTGGAAGAA
Found at i:905909 original size:36 final size:36
Alignment explanation
Indices: 905885--906336 Score: 588
Period size: 36 Copynumber: 12.9 Consensus size: 36
905875 CTTTGGGAAG
* *
905885 GAAAAAAGA-TGCCACGGAGTTGTGGAC-TTAAAAG
1 GAAAAAAGAGTGCCACGGAGTTGTGGGCTTTAAAAA
*
905919 GGAAAAAGAGTGCCACGGAGTTGTGGGCTTT-AAAA
1 GAAAAAAGAGTGCCACGGAGTTGTGGGCTTTAAAAA
* *
905954 G-AAAAA-AGTGCCACAGAGTTGTGGGCTTTGAAAAG
1 GAAAAAAGAGTGCCACGGAGTTGTGGGCTTT-AAAAA
* *
905989 GGAAAAAGAGTGCCACGGAGTTGTGGGCTTT-AAAC
1 GAAAAAAGAGTGCCACGGAGTTGTGGGCTTTAAAAA
*
906024 GGAAAAAG-GTGCCACGGAGTTGTGGGCTTTAAAAA
1 GAAAAAAGAGTGCCACGGAGTTGTGGGCTTTAAAAA
* *
906059 GGGAAAAAGAGTGCCACGGAGTTGTGGGCTTTAAACA
1 -GAAAAAAGAGTGCCACGGAGTTGTGGGCTTTAAAAA
*
906096 G-AAAAAG-GTGCCACGGAGTTGTGGGCTTTGAAAA
1 GAAAAAAGAGTGCCACGGAGTTGTGGGCTTTAAAAA
* * *
906130 GAAGAAAGAGTGCCACGAAGTTGTGGGCTTTGAAAA
1 GAAAAAAGAGTGCCACGGAGTTGTGGGCTTTAAAAA
*
906166 GAAGAAAGAGTGCCACGGAGTTGTGGGCTTTAAAAA
1 GAAAAAAGAGTGCCACGGAGTTGTGGGCTTTAAAAA
* *
906202 G-AAGAAG-GTGCCACGGAGTTGTGGGCTTTGAAAA
1 GAAAAAAGAGTGCCACGGAGTTGTGGGCTTTAAAAA
* * *
906236 GAAGAAAGAGTGCCACGAAGTTGTGGGCTTTGAAAA
1 GAAAAAAGAGTGCCACGGAGTTGTGGGCTTTAAAAA
*
906272 GAAGAAAGAGTGCCACGGAGTTGTGGGCTTTAAAAA
1 GAAAAAAGAGTGCCACGGAGTTGTGGGCTTTAAAAA
* *
906308 G-AAGAAG-GTGCCACGGAGTTGTGGACTTT
1 GAAAAAAGAGTGCCACGGAGTTGTGGGCTTT
906337 GAGACAAAAT
Statistics
Matches: 379, Mismatches: 26, Indels: 26
0.88 0.06 0.06
Matches are distributed among these distances:
33 22 0.06
34 109 0.29
35 62 0.16
36 138 0.36
37 48 0.13
ACGTcount: A:0.34, C:0.12, G:0.34, T:0.20
Consensus pattern (36 bp):
GAAAAAAGAGTGCCACGGAGTTGTGGGCTTTAAAAA
Found at i:905960 original size:70 final size:70
Alignment explanation
Indices: 905885--906338 Score: 602
Period size: 70 Copynumber: 6.5 Consensus size: 70
905875 CTTTGGGAAG
*
905885 GAAAAAAGATGCCACGGAGTTGTGGAC-TT-AAAAGGGAAAAAGAGTGCCACGGAGTTGTGGGCT
1 GAAAAAAGATGCCACGGAGTTGTGGGCTTTGAAAA-GGAAAAAGAGTGCCACGGAGTTGTGGGCT
905948 TTAAAA
65 TTAAAA
*
905954 GAAAAAAG-TGCCACAGAGTTGTGGGCTTTGAAAAGGGAAAAAGAGTGCCACGGAGTTGTGGGCT
1 GAAAAAAGATGCCACGGAGTTGTGGGCTTTGAAAA-GGAAAAAGAGTGCCACGGAGTTGTGGGCT
*
906018 TTAAAC
65 TTAAAA
* * *
906024 GGAAAAAGGTGCCACGGAGTTGTGGGCTTTAAAAAGGGAAAAAGAGTGCCACGGAGTTGTGGGCT
1 GAAAAAAGATGCCACGGAGTTGTGGGCTTTGAAAA-GGAAAAAGAGTGCCACGGAGTTGTGGGCT
906089 TTAAACA
65 TTAAA-A
* *
906096 G-AAAAAGGTGCCACGGAGTTGTGGGCTTTGAAAA-GAAGAAAGAGTGCCACGAAGTTGTGGGCT
1 GAAAAAAGATGCCACGGAGTTGTGGGCTTTGAAAAGGAA-AAAGAGTGCCACGGAGTTGTGGGCT
906159 TTGAAAA
65 TT-AAAA
* * *
906166 GAAGAAAGAGTGCCACGGAGTTGTGGGCTTT-AAAAAGAAGAAG-GTGCCACGGAGTTGTGGGCT
1 GAAAAAAGA-TGCCACGGAGTTGTGGGCTTTGAAAAGGAAAAAGAGTGCCACGGAGTTGTGGGCT
906229 TTGAAAA
65 TT-AAAA
* *
906236 GAAGAAAGAGTGCCACGAAGTTGTGGGCTTTGAAAA-GAAGAAAGAGTGCCACGGAGTTGTGGGC
1 GAAAAAAGA-TGCCACGGAGTTGTGGGCTTTGAAAAGGAA-AAAGAGTGCCACGGAGTTGTGGGC
906300 TTTAAAA
64 TTTAAAA
* * *
906307 -AGAAGAAGGTGCCACGGAGTTGTGGACTTTGA
1 GA-AAAAAGATGCCACGGAGTTGTGGGCTTTGA
906339 GACAAAATGC
Statistics
Matches: 352, Mismatches: 20, Indels: 25
0.89 0.05 0.06
Matches are distributed among these distances:
68 16 0.05
69 13 0.04
70 155 0.44
71 121 0.34
72 47 0.13
ACGTcount: A:0.34, C:0.12, G:0.34, T:0.20
Consensus pattern (70 bp):
GAAAAAAGATGCCACGGAGTTGTGGGCTTTGAAAAGGAAAAAGAGTGCCACGGAGTTGTGGGCTT
TAAAA
Found at i:906188 original size:106 final size:104
Alignment explanation
Indices: 905887--906338 Score: 646
Period size: 106 Copynumber: 4.3 Consensus size: 104
905877 TTGGGAAGGA
* * *
905887 AAAAAGATGCCACGGAGTTGTGGAC-TT-AAAAGGGAAAAAGAGTGCCACGGAGTTGTGGGCTTT
1 AAAAAGGTGCCACGGAGTTGTGGGCTTTGAAAA--GAAAAAGAGTGCCACGAAGTTGTGGGCTTT
* *
905950 -AAAAGAAAAA-AGTGCCACAGAGTTGTGGGCTTTGAAAAGGG
64 GAAAAGAAAAAGAGTGCCACGGAGTTGTGGGCTTT-AAAA-AG
* *
905991 AAAAAGAGTGCCACGGAGTTGTGGGCTTT-AAACGGAAAAAG-GTGCCACGGAGTTGTGGGCTTT
1 AAAAAG-GTGCCACGGAGTTGTGGGCTTTGAAA-AGAAAAAGAGTGCCACGAAGTTGTGGGCTTT
* *
906054 AAAAAGGGAAAAAGAGTGCCACGGAGTTGTGGGCTTTAAACAG
64 GAAAA--GAAAAAGAGTGCCACGGAGTTGTGGGCTTTAAAAAG
906097 AAAAAGGTGCCACGGAGTTGTGGGCTTTGAAAAGAAGAAAGAGTGCCACGAAGTTGTGGGCTTTG
1 AAAAAGGTGCCACGGAGTTGTGGGCTTTGAAAAGAA-AAAGAGTGCCACGAAGTTGTGGGCTTTG
906162 AAAAGAAGAAAGAGTGCCACGGAGTTGTGGGCTTTAAAAAG
65 AAAAGAA-AAAGAGTGCCACGGAGTTGTGGGCTTTAAAAAG
*
906203 AAGAAGGTGCCACGGAGTTGTGGGCTTTGAAAAGAAGAAAGAGTGCCACGAAGTTGTGGGCTTTG
1 AAAAAGGTGCCACGGAGTTGTGGGCTTTGAAAAGAA-AAAGAGTGCCACGAAGTTGTGGGCTTTG
906268 AAAAGAAGAAAGAGTGCCACGGAGTTGTGGGCTTTAAAAAG
65 AAAAGAA-AAAGAGTGCCACGGAGTTGTGGGCTTTAAAAAG
* *
906309 AAGAAGGTGCCACGGAGTTGTGGACTTTGA
1 AAAAAGGTGCCACGGAGTTGTGGGCTTTGA
906339 GACAAAATGC
Statistics
Matches: 325, Mismatches: 12, Indels: 20
0.91 0.03 0.06
Matches are distributed among these distances:
104 28 0.09
105 56 0.17
106 185 0.57
107 34 0.10
108 22 0.07
ACGTcount: A:0.34, C:0.12, G:0.34, T:0.20
Consensus pattern (104 bp):
AAAAAGGTGCCACGGAGTTGTGGGCTTTGAAAAGAAAAAGAGTGCCACGAAGTTGTGGGCTTTGA
AAAGAAAAAGAGTGCCACGGAGTTGTGGGCTTTAAAAAG
Found at i:906396 original size:62 final size:63
Alignment explanation
Indices: 906282--906460 Score: 199
Period size: 62 Copynumber: 2.8 Consensus size: 63
906272 GAAGAAAGAG
* * * * *
906282 TGCCACGGAGTTGTGGGCTTTAAAAAGAAGAAGG-TGCCACGGAGTTGTGGACTTTGAGACA-A-
1 TGCCACTGAGTCGTGGACTTT--AAAG-AGAAGGATGCCACTGAGTCGTGGACTTTGAG-CAGAG
906344 AA
62 AA
* *
906346 TGCCACTGAGTCGTGGACTTTAAAGAGAAGGATGCCACTGCGTCGTGGACTTTGAGCAGAGAT
1 TGCCACTGAGTCGTGGACTTTAAAGAGAAGGATGCCACTGAGTCGTGGACTTTGAGCAGAGAA
906409 TGCCACTGAGTCGTGGACTTT---GAGAAGAGATTGCCACTGAGTCGTGGACTTT
1 TGCCACTGAGTCGTGGACTTTAAAGAGAAG-GA-TGCCACTGAGTCGTGGACTTT
906461 TTTTGACTTT
Statistics
Matches: 102, Mismatches: 8, Indels: 12
0.84 0.07 0.10
Matches are distributed among these distances:
60 6 0.06
61 10 0.10
62 46 0.45
63 22 0.22
64 18 0.18
ACGTcount: A:0.26, C:0.17, G:0.32, T:0.25
Consensus pattern (63 bp):
TGCCACTGAGTCGTGGACTTTAAAGAGAAGGATGCCACTGAGTCGTGGACTTTGAGCAGAGAA
Found at i:906416 original size:31 final size:31
Alignment explanation
Indices: 906316--906460 Score: 172
Period size: 31 Copynumber: 4.7 Consensus size: 31
906306 AAGAAGAAGG
* * *
906316 TGCCACGGAGTTGTGGACTTTGAGACA-A-AA
1 TGCCACTGAGTCGTGGACTTTGAG-CAGAGAT
*
906346 TGCCACTGAGTCGTGGACTTTAAAG-AGAAGGA-
1 TGCCACTGAGTCGTGGACTTT-GAGCAG-A-GAT
*
906378 TGCCACTGCGTCGTGGACTTTGAGCAGAGAT
1 TGCCACTGAGTCGTGGACTTTGAGCAGAGAT
*
906409 TGCCACTGAGTCGTGGACTTTGAGAAGAGAT
1 TGCCACTGAGTCGTGGACTTTGAGCAGAGAT
906440 TGCCACTGAGTCGTGGACTTT
1 TGCCACTGAGTCGTGGACTTT
906461 TTTTGACTTT
Statistics
Matches: 101, Mismatches: 7, Indels: 13
0.83 0.06 0.11
Matches are distributed among these distances:
29 1 0.01
30 21 0.21
31 56 0.55
32 22 0.22
33 1 0.01
ACGTcount: A:0.25, C:0.19, G:0.31, T:0.26
Consensus pattern (31 bp):
TGCCACTGAGTCGTGGACTTTGAGCAGAGAT
Found at i:906495 original size:8 final size:9
Alignment explanation
Indices: 906470--906494 Score: 50
Period size: 9 Copynumber: 2.8 Consensus size: 9
906460 TTTTTGACTT
906470 TTTTTTTTA
1 TTTTTTTTA
906479 TTTTTTTTA
1 TTTTTTTTA
906488 TTTTTTT
1 TTTTTTT
906495 AAAAAAAGGT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 16 1.00
ACGTcount: A:0.08, C:0.00, G:0.00, T:0.92
Consensus pattern (9 bp):
TTTTTTTTA
Found at i:914792 original size:52 final size:52
Alignment explanation
Indices: 914712--914831 Score: 213
Period size: 52 Copynumber: 2.3 Consensus size: 52
914702 AAAAGTTGTT
* *
914712 TGCATGTATCGATACATTTAATAGTGTATCGATACATCTGGGCAAATTTGCC
1 TGCATGTATCGATACATTTAATAATGTATCGATACATCTGGGCAAAATTGCC
*
914764 TGCATGTATCGATACATTTTATAATGTATCGATACATCTGGGCAAAATTGCC
1 TGCATGTATCGATACATTTAATAATGTATCGATACATCTGGGCAAAATTGCC
914816 TGCATGTATCGATACA
1 TGCATGTATCGATACA
914832 AAGATCAGTG
Statistics
Matches: 65, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
52 65 1.00
ACGTcount: A:0.30, C:0.17, G:0.18, T:0.34
Consensus pattern (52 bp):
TGCATGTATCGATACATTTAATAATGTATCGATACATCTGGGCAAAATTGCC
Found at i:914844 original size:52 final size:51
Alignment explanation
Indices: 914712--914851 Score: 201
Period size: 52 Copynumber: 2.7 Consensus size: 51
914702 AAAAGTTGTT
*
914712 TGCATGTATCGATACATTTAATAGTGTATCGATACATCTGGGCAAATTTGCC
1 TGCATGTATCGATACA-TTAATAGTGTATCGATACATCTGGGCAAAATTGCC
* *
914764 TGCATGTATCGATACATTTTATAATGTATCGATACATCTGGGCAAAATTGCC
1 TGCATGTATCGATACA-TTAATAGTGTATCGATACATCTGGGCAAAATTGCC
*
914816 TGCATGTATCGATACA-AAGATCAGTGTATCGATACA
1 TGCATGTATCGATACATTA-AT-AGTGTATCGATACA
914852 ATGTATCGAT
Statistics
Matches: 80, Mismatches: 6, Indels: 4
0.89 0.07 0.04
Matches are distributed among these distances:
51 2 0.03
52 78 0.98
ACGTcount: A:0.31, C:0.17, G:0.19, T:0.33
Consensus pattern (51 bp):
TGCATGTATCGATACATTAATAGTGTATCGATACATCTGGGCAAAATTGCC
Found at i:914858 original size:13 final size:13
Alignment explanation
Indices: 914840--914864 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
914830 CAAAGATCAG
914840 TGTATCGATACAA
1 TGTATCGATACAA
914853 TGTATCGATACA
1 TGTATCGATACA
914865 TTTGAGTAAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:914948 original size:13 final size:13
Alignment explanation
Indices: 914930--914954 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
914920 CAAAAAAATA
914930 TGTATCGATACAT
1 TGTATCGATACAT
914943 TGTATCGATACA
1 TGTATCGATACA
914955 ACATTTTATG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:914950 original size:33 final size:33
Alignment explanation
Indices: 914908--914974 Score: 98
Period size: 33 Copynumber: 2.0 Consensus size: 33
914898 AGTAGCTTAA
914908 ATTGTATCGATACAAAAAAATATGTATCGATAC
1 ATTGTATCGATACAAAAAAATATGTATCGATAC
* ***
914941 ATTGTATCGATACAACATTTTATGTATCGATAC
1 ATTGTATCGATACAAAAAAATATGTATCGATAC
914974 A
1 A
914975 AATCATTGAA
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
33 30 1.00
ACGTcount: A:0.40, C:0.13, G:0.12, T:0.34
Consensus pattern (33 bp):
ATTGTATCGATACAAAAAAATATGTATCGATAC
Found at i:915053 original size:21 final size:21
Alignment explanation
Indices: 915012--915053 Score: 66
Period size: 21 Copynumber: 2.0 Consensus size: 21
915002 GTTGGGACCT
*
915012 TGTATCGATACATTTTAACAA
1 TGTATCGATACATTTGAACAA
*
915033 TGTATCGATACATTTGGACAA
1 TGTATCGATACATTTGAACAA
915054 AAATGTAATT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.36, C:0.14, G:0.14, T:0.36
Consensus pattern (21 bp):
TGTATCGATACATTTGAACAA
Found at i:915534 original size:20 final size:20
Alignment explanation
Indices: 915509--915562 Score: 83
Period size: 20 Copynumber: 2.7 Consensus size: 20
915499 AAAATGCCTG
*
915509 AATGTATCGATACAATG-AGC
1 AATGTATCGATACAATGCA-A
915529 AATGTATCGATACAATGCAA
1 AATGTATCGATACAATGCAA
915549 AATGTATCGATACA
1 AATGTATCGATACA
915563 TCTGGGTAAA
Statistics
Matches: 32, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
20 31 0.97
21 1 0.03
ACGTcount: A:0.43, C:0.15, G:0.17, T:0.26
Consensus pattern (20 bp):
AATGTATCGATACAATGCAA
Found at i:915638 original size:20 final size:20
Alignment explanation
Indices: 915613--915688 Score: 143
Period size: 20 Copynumber: 3.8 Consensus size: 20
915603 GTATCGATAC
*
915613 AATGTATTGATACATTGAAT
1 AATGTATCGATACATTGAAT
915633 AATGTATCGATACATTGAAT
1 AATGTATCGATACATTGAAT
915653 AATGTATCGATACATTGAAT
1 AATGTATCGATACATTGAAT
915673 AATGTATCGATACATT
1 AATGTATCGATACATT
915689 TCCTTGGCAG
Statistics
Matches: 55, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
20 55 1.00
ACGTcount: A:0.39, C:0.09, G:0.14, T:0.37
Consensus pattern (20 bp):
AATGTATCGATACATTGAAT
Found at i:915812 original size:21 final size:20
Alignment explanation
Indices: 915786--915824 Score: 69
Period size: 21 Copynumber: 1.9 Consensus size: 20
915776 GTTGGGACCT
915786 TGTATCGATACATTCTAGAAA
1 TGTATCGATACATT-TAGAAA
915807 TGTATCGATACATTTAGA
1 TGTATCGATACATTTAGA
915825 CAAAAATGTG
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
20 4 0.22
21 14 0.78
ACGTcount: A:0.36, C:0.13, G:0.15, T:0.36
Consensus pattern (20 bp):
TGTATCGATACATTTAGAAA
Found at i:918039 original size:51 final size:51
Alignment explanation
Indices: 917984--918192 Score: 199
Period size: 51 Copynumber: 4.2 Consensus size: 51
917974 TCCCGGTTCC
**
917984 ATTTCCAAAACATCAATTTTTCTTAATCGGGGATACTCCAACTCCGATTTT
1 ATTTCCAAAACATCAATTTTTCACAATCGGGGATACTCCAACTCCGATTTT
* * * ** * * *
918035 ATTTCTAAAGCATCGATTTACCGCAATCGGTGATACTCCAACTCTGATTTT
1 ATTTCCAAAACATCAATTTTTCACAATCGGGGATACTCCAACTCCGATTTT
* * * *
918086 ATTTCCAAAACACCAATTTTTCACAATTGGGGATACTCCAACCCCGACTTT
1 ATTTCCAAAACATCAATTTTTCACAATCGGGGATACTCCAACTCCGATTTT
** * ** * * *
918137 ATTTTTAAAATATTGATTTTTCATAATCGGGGGTACTCCAA-TCCCA--TT
1 ATTTCCAAAACATCAATTTTTCACAATCGGGGATACTCCAACTCCGATTTT
918185 ATTTCCAA
1 ATTTCCAA
918193 GGGGAAACTC
Statistics
Matches: 124, Mismatches: 34, Indels: 3
0.77 0.21 0.02
Matches are distributed among these distances:
48 8 0.06
50 3 0.02
51 113 0.91
ACGTcount: A:0.30, C:0.23, G:0.11, T:0.36
Consensus pattern (51 bp):
ATTTCCAAAACATCAATTTTTCACAATCGGGGATACTCCAACTCCGATTTT
Found at i:918165 original size:102 final size:102
Alignment explanation
Indices: 917984--918177 Score: 244
Period size: 102 Copynumber: 1.9 Consensus size: 102
917974 TCCCGGTTCC
* ** * * *
917984 ATTTCCAAAACATCAATTTTTCTTAATCGGGGATACTCCAACTCCGATTTTATTTCTAAAGCATC
1 ATTTCCAAAACACCAATTTTTCACAATCGGGGATACTCCAACCCCGACTTTATTTCTAAAACATC
* *
918049 GATTTACCGCAATCGGTGATACTCCAACTCTGATTTT
66 GATTTACCACAATCGGGGATACTCCAACTCTGATTTT
* * * *
918086 ATTTCCAAAACACCAATTTTTCACAATTGGGGATACTCCAACCCCGACTTTATTTTTAAAATATT
1 ATTTCCAAAACACCAATTTTTCACAATCGGGGATACTCCAACCCCGACTTTATTTCTAAAACATC
** * *
918151 GATTTTTCATAATCGGGGGTACTCCAA
66 GATTTACCACAATCGGGGATACTCCAA
918178 TCCCATTATT
Statistics
Matches: 76, Mismatches: 16, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
102 76 1.00
ACGTcount: A:0.30, C:0.23, G:0.12, T:0.36
Consensus pattern (102 bp):
ATTTCCAAAACACCAATTTTTCACAATCGGGGATACTCCAACCCCGACTTTATTTCTAAAACATC
GATTTACCACAATCGGGGATACTCCAACTCTGATTTT
Found at i:918291 original size:51 final size:51
Alignment explanation
Indices: 918193--918312 Score: 143
Period size: 51 Copynumber: 2.4 Consensus size: 51
918183 TTATTTCCAA
* *
918193 GGGGAAACTCCAACCCCGATTTTATTTCTAAAATACCAAATTTTCACAATC
1 GGGGATACTCCAACCCCGATTTTATTTCCAAAATACCAAATTTTCACAATC
* * ***
918244 GGGGATACTCCAACTCTGATTTTATTTCCAAAATA-TTGATTTCTCACAATC
1 GGGGATACTCCAACCCCGATTTTATTTCCAAAATACCAAATTT-TCACAATC
* *
918295 GAGGATACTTCAACCCCG
1 GGGGATACTCCAACCCCG
918313 GCCTTATTTC
Statistics
Matches: 57, Mismatches: 11, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
50 4 0.07
51 53 0.93
ACGTcount: A:0.32, C:0.25, G:0.12, T:0.31
Consensus pattern (51 bp):
GGGGATACTCCAACCCCGATTTTATTTCCAAAATACCAAATTTTCACAATC
Found at i:918338 original size:181 final size:180
Alignment explanation
Indices: 918012--918438 Score: 500
Period size: 181 Copynumber: 2.4 Consensus size: 180
918002 TTTCTTAATC
* * ** * * * *
918012 GGGGATACTCCAACTCCGATTTTATTTCTAAAGCATCGATTTACCGCAATCGGTGATACTCCAAC
1 GGGGAAACTCCAACCCCGATTTTATTTCTAAAATACCGATTT-TCACAATCGGGGATACTCCAAC
* * * * *
918077 TCTGATTTTATTTCCAAAACACCAATTTTTCACAATTGGGGATACTCCAACCCCGACTTTATTTT
65 TCTGATTTTATTTCCAAAACACCAATTTCTCACAATCGAGGATACTCCAACCCCGACCTTATTTC
* * *
918142 TAAAATATTGATTTTTCATAATCGGGGGTACTCCAATCCCATTATTTCCAA
130 TAAAATATCGATTTTTCATAATCGGGGATACTCCAACCCCATTATTTCCAA
*
918193 GGGGAAACTCCAACCCCGATTTTATTTCTAAAATACCAAATTTTCACAATCGGGGATACTCCAAC
1 GGGGAAACTCCAACCCCGATTTTATTTCTAAAATACC-GATTTTCACAATCGGGGATACTCCAAC
* *** * *
918258 TCTGATTTTATTTCCAAAATATTGATTTCTCACAATCGAGGATACTTCAACCCCGGCCTTATTTC
65 TCTGATTTTATTTCCAAAACACCAATTTCTCACAATCGAGGATACTCCAACCCCGACCTTATTTC
* * * * *
918323 T-AGATCATCGATTTTTCATAATTGGGGATACTCCAACCCCGTTATTTTCGA
130 TAAAAT-ATCGATTTTTCATAATCGGGGATACTCCAACCCCATTATTTCCAA
* * *
918374 -GGGAATACTCCAACCTCGATTTTATTT-TCAAAATACCGATTTTCTATAATCAGGGATACTCCA
1 GGGGAA-ACTCCAACCCCGATTTTATTTCT-AAAATACCGATTTTC-ACAATCGGGGATACTCCA
918437 AC
63 AC
918439 CCTGTTATTT
Statistics
Matches: 209, Mismatches: 32, Indels: 10
0.83 0.13 0.04
Matches are distributed among these distances:
180 15 0.07
181 190 0.91
182 4 0.02
ACGTcount: A:0.29, C:0.24, G:0.13, T:0.34
Consensus pattern (180 bp):
GGGGAAACTCCAACCCCGATTTTATTTCTAAAATACCGATTTTCACAATCGGGGATACTCCAACT
CTGATTTTATTTCCAAAACACCAATTTCTCACAATCGAGGATACTCCAACCCCGACCTTATTTCT
AAAATATCGATTTTTCATAATCGGGGATACTCCAACCCCATTATTTCCAA
Found at i:918430 original size:79 final size:79
Alignment explanation
Indices: 918331--918523 Score: 235
Period size: 79 Copynumber: 2.4 Consensus size: 79
918321 TCTAGATCAT
* ** * * *
918331 CGATTTTTCATAATTGGGGATACTCCAACCCCGTTATTTTCG-AGGGAATACTCCAACCTCGATT
1 CGATTTTCCATAATCAGGGATACTCCAACCCCGTTATTTCCGAAGGG-ATACTCCAACCCCAATT
* *
918395 TTATTTTCAAAATAC
65 TTATTTCCAAAACAC
* *
918410 CGATTTTCTATAATCAGGGATACTCCAACCCTGTTATTTCCGAAGGGATACTCCAACCCCAATTT
1 CGATTTTCCATAATCAGGGATACTCCAACCCCGTTATTTCCGAAGGGATACTCCAACCCCAATTT
*
918475 TATTTCCAGAACAC
66 TATTTCCAAAACAC
* * * *
918489 CGATTTTCCATCATCGGGGATACTCTACCCCCGTT
1 CGATTTTCCATAATCAGGGATACTCCAACCCCGTT
918524 GTTATCTCCA
Statistics
Matches: 96, Mismatches: 17, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
79 92 0.96
80 4 0.04
ACGTcount: A:0.26, C:0.27, G:0.14, T:0.33
Consensus pattern (79 bp):
CGATTTTCCATAATCAGGGATACTCCAACCCCGTTATTTCCGAAGGGATACTCCAACCCCAATTT
TATTTCCAAAACAC
Found at i:932096 original size:55 final size:54
Alignment explanation
Indices: 932025--932269 Score: 258
Period size: 55 Copynumber: 4.4 Consensus size: 54
932015 TCCTTTCACC
* * * * * *
932025 CTTT-AGTCCTGAAAGAGTAAGACGCCTTTCAAAGCCTACACAAATTGGTAGCA
1 CTTTCAGTCCTCAAAGAGCAGGACGCCTTTCAAAGCCCACACAAGTTGGTGGCA
* *
932078 CCTTTCACTCCTCAAAGAGCAGGACGCCTTTCAAAGCCCGCACAAGTTGGTGGCA
1 -CTTTCAGTCCTCAAAGAGCAGGACGCCTTTCAAAGCCCACACAAGTTGGTGGCA
* * * * *
932133 TTTTTTAGTCCTTAAAGAGCAGGACACCTTTTAAAGCCCACACAAGTTGGTGGCA
1 -CTTTCAGTCCTCAAAGAGCAGGACGCCTTTCAAAGCCCACACAAGTTGGTGGCA
*
932188 CTTCCCAGTCCTCAAAGAGCAGGACGCCTTATCCTTTTAAAGCCCACACAAGTTGGTGGCA
1 CTT-TCAGTCCTCAAAGAGCAGGACGCCTT-T-C----AAAGCCCACACAAGTTGGTGGCA
*
932249 CTTTTTAGTCCTCAAAGAGCA
1 C-TTTCAGTCCTCAAAGAGCA
932270 AGATGCTCTC
Statistics
Matches: 158, Mismatches: 24, Indels: 11
0.82 0.12 0.06
Matches are distributed among these distances:
54 6 0.04
55 110 0.70
56 1 0.01
61 39 0.25
62 2 0.01
ACGTcount: A:0.29, C:0.27, G:0.20, T:0.25
Consensus pattern (54 bp):
CTTTCAGTCCTCAAAGAGCAGGACGCCTTTCAAAGCCCACACAAGTTGGTGGCA
Found at i:932398 original size:211 final size:210
Alignment explanation
Indices: 932089--932492 Score: 574
Period size: 211 Copynumber: 1.9 Consensus size: 210
932079 CTTTCACTCC
* * *
932089 TCAAAGAGCAGGACGCCTTTCAAAGCCCGCACAAGTTGGTGGCATTTTTTAGTCCTTAAAGAGCA
1 TCAAAGAGCAGGACGCCTTTCAAAGCCCACACAAGTTGGTGGCATTTTCTAGTCCTCAAAGAGCA
*
932154 GGACACCTTTTAAAGCCCACACAAGTTGGTGGCACTTCCCAGTCCTCAAAGAGCAGGACGCCTTA
66 GGACACCTTTCAAAGCCCACACAAGTTGGTGGCACTTCCCAGTCCTCAAAGAGCAGGACGCCTTA
* * * ** *
932219 TCCTTTTAAAGCCCACACAAGTTGGTGGCACTTTTTAGTCCTCAAAGAGCAAGATGCTCTCTCCT
131 TCCTTTAAAAGCCCACACAAGTTGGAGGCACCTTCCAATCCTCAAAGAGCAAGATGCTCTCTCCT
932284 TTCACCCTTTAGTCA
196 TTCACCCTTTAGTCA
* *
932299 TCAAAGAGTAGGACGCCTTTTAAAGCCCACACAAGTTGGTGGCACTTTTCTAGTCCTCAAAGAGC
1 TCAAAGAGCAGGACGCCTTTCAAAGCCCACACAAGTTGGTGGCA-TTTTCTAGTCCTCAAAGAGC
* * * * * *
932364 AGGACGCCTTTCAAAGCCCATACAAGTTGGTGGCATTTTCCAGTCCTCAAAGAGCAGGATGCTTT
65 AGGACACCTTTCAAAGCCCACACAAGTTGGTGGCACTTCCCAGTCCTCAAAGAGCAGGACGCCTT
* * * * * * *
932429 CTCCTTTAAAAGGCCACTCGAGTTGGAGGCACCTTCCAATCCTTAAAGAGCAGGATGCTTTCTC
130 ATCCTTTAAAAGCCCACACAAGTTGGAGGCACCTTCCAATCCTCAAAGAGCAAGATGCTCTCTC
932493 TTTGCAAAGC
Statistics
Matches: 168, Mismatches: 25, Indels: 1
0.87 0.13 0.01
Matches are distributed among these distances:
210 41 0.24
211 127 0.76
ACGTcount: A:0.27, C:0.27, G:0.21, T:0.26
Consensus pattern (210 bp):
TCAAAGAGCAGGACGCCTTTCAAAGCCCACACAAGTTGGTGGCATTTTCTAGTCCTCAAAGAGCA
GGACACCTTTCAAAGCCCACACAAGTTGGTGGCACTTCCCAGTCCTCAAAGAGCAGGACGCCTTA
TCCTTTAAAAGCCCACACAAGTTGGAGGCACCTTCCAATCCTCAAAGAGCAAGATGCTCTCTCCT
TTCACCCTTTAGTCA
Found at i:932432 original size:150 final size:152
Alignment explanation
Indices: 932136--932435 Score: 437
Period size: 150 Copynumber: 2.0 Consensus size: 152
932126 GGTGGCATTT
* *
932136 TTTAGTCCTTAAAGAGCAGGACACCTTTTAAAGCCCACACAAGTTGGTGGCACTTCCCAGTCCTC
1 TTTAGTCATCAAAGAGCAGGACACCTTTTAAAGCCCACACAAGTTGGTGGCACTTCCCAGTCCTC
*
932201 AAAGAGCAGGACGCCTTATCCTTTTAAAGCCCACACAAGTTGGTGGCACTTTTTAGTCCTCAAAG
66 AAAGAGCAGGACGCCTTATCC---TAAAGCCCACACAAGTTGGTGGCACTTTTCAGTCCTCAAAG
932266 AGCAAGATGCTCTCTCCTTTCACCC
128 AGCAAGATGCTCTCTCCTTTCACCC
* * * *
932291 TTTAGTCATCAAAGAGTAGGACGCCTTTTAAAGCCCACACAAGTTGGTGGCACTTTTCTAGTCCT
1 TTTAGTCATCAAAGAGCAGGACACCTTTTAAAGCCCACACAAGTTGGTGGCAC-TTCCCAGTCCT
*
932356 CAAAGAGCAGGACGCCTT-T-C-AAAGCCCATACAAGTTGGTGGCA-TTTTCCAGTCCTCAAAGA
65 CAAAGAGCAGGACGCCTTATCCTAAAGCCCACACAAGTTGGTGGCACTTTT-CAGTCCTCAAAGA
* *
932417 GCAGGATGCTTTCTCCTTT
129 GCAAGATGCTCTCTCCTTT
932436 AAAAGGCCAC
Statistics
Matches: 133, Mismatches: 10, Indels: 9
0.88 0.07 0.06
Matches are distributed among these distances:
149 4 0.03
150 51 0.38
154 1 0.01
155 50 0.38
156 27 0.20
ACGTcount: A:0.26, C:0.27, G:0.19, T:0.27
Consensus pattern (152 bp):
TTTAGTCATCAAAGAGCAGGACACCTTTTAAAGCCCACACAAGTTGGTGGCACTTCCCAGTCCTC
AAAGAGCAGGACGCCTTATCCTAAAGCCCACACAAGTTGGTGGCACTTTTCAGTCCTCAAAGAGC
AAGATGCTCTCTCCTTTCACCC
Found at i:932594 original size:122 final size:116
Alignment explanation
Indices: 932314--932612 Score: 357
Period size: 122 Copynumber: 2.5 Consensus size: 116
932304 GAGTAGGACG
* *
932314 CCTTTTAAAGCCCACACAAGTTGGTGGCACTTTTCTAGTCCTCAAAGAGCAGGACGCCTTTCAAA
1 CCTTTAAAAGCCCACACAAGTTGGTGGCACTTTT-TAGTCCTTAAAGAGCAGGACGCCTTTCAAA
* **
932379 GCCCATACAAGTTGGTGGCATTTTCCAGTCCTCAAAGAGCAGGATGCTTTCT
65 GCCCACACAAGTTGGTGGCACCTTCCAGTCCTCAAAGAGCAGGATGCTTTCT
* * * * * ** * *
932431 CCTTTAAAAGGCCACTCGAGTTGGAGGCACCTTCCAATCCTTAAAGAGCAGGATGCTTTCTCTTT
1 CCTTTAAAAGCCCACACAAGTTGGTGGCACTTTTTAGTCCTTAAAGAGCAGGA--C--GC-CTTT
932496 GCAAAGCCCACACAAGTTGGTGGCACCTTCCAGTCCTCAAAGAGCAGGATGCCTTT-T
61 -CAAAGCCCACACAAGTTGGTGGCACCTTCCAGTCCTCAAAGAGCAGGATG-CTTTCT
* ** *
932553 CTTTTCGAAGCCCACACAAGTTAGTGGCACTTTTTAGTCCTTAAAGAGCAGGACGCCTTT
1 CCTTTAAAAGCCCACACAAGTTGGTGGCACTTTTTAGTCCTTAAAGAGCAGGACGCCTTT
932613 TCCTTTTCTC
Statistics
Matches: 148, Mismatches: 27, Indels: 14
0.78 0.14 0.07
Matches are distributed among these distances:
116 16 0.11
117 31 0.21
118 2 0.01
120 2 0.01
121 4 0.03
122 89 0.60
123 4 0.03
ACGTcount: A:0.25, C:0.27, G:0.21, T:0.27
Consensus pattern (116 bp):
CCTTTAAAAGCCCACACAAGTTGGTGGCACTTTTTAGTCCTTAAAGAGCAGGACGCCTTTCAAAG
CCCACACAAGTTGGTGGCACCTTCCAGTCCTCAAAGAGCAGGATGCTTTCT
Found at i:932611 original size:61 final size:60
Alignment explanation
Indices: 932315--932620 Score: 320
Period size: 61 Copynumber: 5.1 Consensus size: 60
932305 AGTAGGACGC
*
932315 CTTTT-AAAGCCCACACAAGTTGGTGGCACTTTTCTAGTCCTCAAAGAGCAGGACGC----
1 CTTTTCAAAGCCCACACAAGTTGGTGGCACTTTTC-AGTCCTCAAAGAGCAGGATGCTTTT
*
932371 C-TTTCAAAGCCCATACAAGTTGGTGGCA-TTTTCCAGTCCTCAAAGAGCAGGATGCTTTCT
1 CTTTTCAAAGCCCACACAAGTTGGTGGCACTTTT-CAGTCCTCAAAGAGCAGGATGCTTT-T
* * * * * * * * * *
932431 CCTTTAAAAGGCCACTCGAGTTGGAGGCACCTTCCAATCCTTAAAGAGCAGGATGCTTTCT
1 CTTTTCAAAGCCCACACAAGTTGGTGGCACTTTTCAGTCCTCAAAGAGCAGGATGCTTT-T
* * *
932492 CTTTGCAAAGCCCACACAAGTTGGTGGCACCTTCCAGTCCTCAAAGAGCAGGATGCCTTTT
1 CTTTTCAAAGCCCACACAAGTTGGTGGCACTTTTCAGTCCTCAAAGAGCAGGATG-CTTTT
* * * * *
932553 CTTTTCGAAGCCCACACAAGTTAGTGGCACTTTTTAGTCCTTAAAGAGCAGGACGCCTTTT
1 CTTTTCAAAGCCCACACAAGTTGGTGGCACTTTTCAGTCCTCAAAGAGCAGGATG-CTTTT
932614 CCTTTTC
1 -CTTTTC
932621 TCCTTTGTCT
Statistics
Matches: 210, Mismatches: 29, Indels: 16
0.82 0.11 0.06
Matches are distributed among these distances:
55 27 0.13
56 24 0.11
60 1 0.00
61 146 0.70
62 12 0.06
ACGTcount: A:0.25, C:0.27, G:0.20, T:0.28
Consensus pattern (60 bp):
CTTTTCAAAGCCCACACAAGTTGGTGGCACTTTTCAGTCCTCAAAGAGCAGGATGCTTTT
Found at i:932724 original size:42 final size:42
Alignment explanation
Indices: 932669--932763 Score: 113
Period size: 42 Copynumber: 2.3 Consensus size: 42
932659 CTTCTTTATC
* *
932669 CTTTTGTCCTCAAAGAGTAGGACGCACTTT-ATTTTCCTCTTT
1 CTTTTGTCCTCAAAGAGCAGGACACA-TTTCATTTTCCTCTTT
*
932711 CTTTTG-CCTTCAAAGAGCAGGACACATTTCATTTTCCTTTTT
1 CTTTTGTCC-TCAAAGAGCAGGACACATTTCATTTTCCTCTTT
* *
932753 CCTTTATCCTC
1 CTTTTGTCCTC
932764 GAAAAGCTGG
Statistics
Matches: 45, Mismatches: 5, Indels: 6
0.80 0.09 0.11
Matches are distributed among these distances:
41 5 0.11
42 38 0.84
43 2 0.04
ACGTcount: A:0.19, C:0.26, G:0.12, T:0.43
Consensus pattern (42 bp):
CTTTTGTCCTCAAAGAGCAGGACACATTTCATTTTCCTCTTT
Found at i:934811 original size:98 final size:95
Alignment explanation
Indices: 934523--934826 Score: 285
Period size: 97 Copynumber: 3.1 Consensus size: 95
934513 TGCAAAAATG
* ** * *
934523 GGGTTGGGATATCCCCTCGGAAGCATGGGTTGGAGTATCCCCAATGATGATGATTTAAGCAAAAA
1 GGGTTGGAATATCCCCT-GGAAAAATGGGTTGGAGTAT-CTCAATGATGATAATTTAAGCAAAAA
* * **
934588 TAAGGTTTAAATATTGACAACTT-TAAAAATG
64 TAAGATTTAAATATTGACAACTTAAAAAAACA
** * * * * ** *
934619 GGGTTGGAATATCCCCTCCAATTAATGGGGTTGGAGTACCCTCGATGAATAATAAAATAGGC-AA
1 GGGTTGGAATATCCCCTGGAA-AAAT-GGGTTGGAGTA-TCTCAATG-ATGATAATTTAAGCAAA
*
934683 AATAAGATTTAAATATTGACAATTTTAAAAAAACA
62 AATAAGATTTAAATATTGACAA-CTTAAAAAAACA
* *
934718 GGGTTGGAATATCTCCTAGGAAAAATAGGGTTGGAGTATCTCAATGATGATAATTTAAGTAAAAA
1 GGGTTGGAATATCCCCT-GGAAAAAT-GGGTTGGAGTATCTCAATGATGATAATTTAAGCAAAAA
934783 TAAGATTTAAATATTGACGAA-TT-AAAAAA-A
64 TAAGATTTAAATATTGAC-AACTTAAAAAAACA
*
934813 GGGTTGGAGTATCC
1 GGGTTGGAATATCC
934827 TTTCGGAAGA
Statistics
Matches: 167, Mismatches: 32, Indels: 19
0.77 0.15 0.09
Matches are distributed among these distances:
95 15 0.09
96 24 0.14
97 50 0.30
98 39 0.23
99 37 0.22
100 2 0.01
ACGTcount: A:0.39, C:0.11, G:0.22, T:0.28
Consensus pattern (95 bp):
GGGTTGGAATATCCCCTGGAAAAATGGGTTGGAGTATCTCAATGATGATAATTTAAGCAAAAATA
AGATTTAAATATTGACAACTTAAAAAAACA
Found at i:936485 original size:20 final size:19
Alignment explanation
Indices: 936460--936546 Score: 80
Period size: 20 Copynumber: 4.7 Consensus size: 19
936450 TTTACCCAGA
936460 TGTATCGATACACTTTG-CAT
1 TGTATCGATACA--TTGCCAT
936480 TGTATCGATACATTGCTCAT
1 TGTATCGATACATTGC-CAT
936500 TGTATCGAT--A----CAT
1 TGTATCGATACATTGCCAT
936513 TGTATCGATACATTGCTCAT
1 TGTATCGATACATTGC-CAT
*
936533 TTTATCGATACATT
1 TGTATCGATACATT
936547 TTATAATGTA
Statistics
Matches: 57, Mismatches: 1, Indels: 18
0.75 0.01 0.24
Matches are distributed among these distances:
13 12 0.21
15 1 0.02
18 4 0.07
20 40 0.70
ACGTcount: A:0.26, C:0.18, G:0.14, T:0.41
Consensus pattern (19 bp):
TGTATCGATACATTGCCAT
Found at i:936519 original size:33 final size:33
Alignment explanation
Indices: 936477--936546 Score: 131
Period size: 33 Copynumber: 2.1 Consensus size: 33
936467 ATACACTTTG
936477 CATTGTATCGATACATTGCTCATTGTATCGATA
1 CATTGTATCGATACATTGCTCATTGTATCGATA
*
936510 CATTGTATCGATACATTGCTCATTTTATCGATA
1 CATTGTATCGATACATTGCTCATTGTATCGATA
936543 CATT
1 CATT
936547 TTATAATGTA
Statistics
Matches: 36, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
33 36 1.00
ACGTcount: A:0.27, C:0.19, G:0.13, T:0.41
Consensus pattern (33 bp):
CATTGTATCGATACATTGCTCATTGTATCGATA
Found at i:936546 original size:13 final size:13
Alignment explanation
Indices: 936497--936527 Score: 62
Period size: 13 Copynumber: 2.4 Consensus size: 13
936487 ATACATTGCT
936497 CATTGTATCGATA
1 CATTGTATCGATA
936510 CATTGTATCGATA
1 CATTGTATCGATA
936523 CATTG
1 CATTG
936528 CTCATTTTAT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 18 1.00
ACGTcount: A:0.29, C:0.16, G:0.16, T:0.39
Consensus pattern (13 bp):
CATTGTATCGATA
Found at i:936558 original size:20 final size:20
Alignment explanation
Indices: 936508--936586 Score: 88
Period size: 20 Copynumber: 4.0 Consensus size: 20
936498 ATTGTATCGA
* *
936508 TACATTGTATCGATACATTGC
1 TACAATGTATCGATACATT-T
* *
936529 T-CATTTTATCGATACATTT
1 TACAATGTATCGATACATTT
*
936548 TATAATGTATCGATACATTT
1 TACAATGTATCGATACATTT
*
936568 TACAATGTATCTATACATT
1 TACAATGTATCGATACATT
936587 CAGGTATTTT
Statistics
Matches: 50, Mismatches: 7, Indels: 3
0.83 0.12 0.05
Matches are distributed among these distances:
19 1 0.02
20 48 0.96
21 1 0.02
ACGTcount: A:0.32, C:0.15, G:0.09, T:0.44
Consensus pattern (20 bp):
TACAATGTATCGATACATTT
Found at i:937430 original size:13 final size:13
Alignment explanation
Indices: 937412--937441 Score: 60
Period size: 13 Copynumber: 2.3 Consensus size: 13
937402 TGCATTCTTA
937412 TGGTTTTTGTTTG
1 TGGTTTTTGTTTG
937425 TGGTTTTTGTTTG
1 TGGTTTTTGTTTG
937438 TGGT
1 TGGT
937442 AGTTTAGGAC
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 17 1.00
ACGTcount: A:0.00, C:0.00, G:0.33, T:0.67
Consensus pattern (13 bp):
TGGTTTTTGTTTG
Found at i:938986 original size:51 final size:51
Alignment explanation
Indices: 938896--939073 Score: 148
Period size: 51 Copynumber: 3.5 Consensus size: 51
938886 AAATTTCTAG
* * * **
938896 ATTTTTCAT-CTCGGGGATACTCCAA-TCCTGGTTCCATTTCCAAAACATCA
1 ATTTTTCATAATCAGGGATACTCCAACT-CTGATTTTATTTCCAAAACATCA
* * * * **
938946 ATTTTTCTTAATCGGGGATACTCCAACT-TCGATTTTATTTCTAAAGCATTG
1 ATTTTTCATAATCAGGGATACTCCAACTCT-GATTTTATTTCCAAAACATCA
** ** * *
938997 ATTTACCGCAATCAGGGATACTCCAACTCTGATTTTATTTTCAAAACACCA
1 ATTTTTCATAATCAGGGATACTCCAACTCTGATTTTATTTCCAAAACATCA
*
939048 ATTTTTCATAAT-TGGGATACTCCAAC
1 ATTTTTCATAATCAGGGATACTCCAAC
939074 CCCGTTATTT
Statistics
Matches: 99, Mismatches: 25, Indels: 8
0.75 0.19 0.06
Matches are distributed among these distances:
50 22 0.22
51 75 0.76
52 2 0.02
ACGTcount: A:0.29, C:0.23, G:0.12, T:0.37
Consensus pattern (51 bp):
ATTTTTCATAATCAGGGATACTCCAACTCTGATTTTATTTCCAAAACATCA
Found at i:939119 original size:28 final size:27
Alignment explanation
Indices: 939061--939131 Score: 81
Period size: 28 Copynumber: 2.6 Consensus size: 27
939051 TTTCATAATT
*
939061 GGGATACTCCAACCCCGTTATTTCATCG
1 GGGATACTCCAACCCCATTATTTCA-CG
*
939089 GGGATACTCCAGCCCCATTATTTTCGA-G
1 GGGATACTCCAACCCCATTA-TTTC-ACG
*
939117 GGGATACTCTAACCC
1 GGGATACTCCAACCC
939132 TGGCTTTATA
Statistics
Matches: 37, Mismatches: 4, Indels: 4
0.82 0.09 0.09
Matches are distributed among these distances:
28 32 0.86
29 4 0.11
30 1 0.03
ACGTcount: A:0.23, C:0.31, G:0.20, T:0.27
Consensus pattern (27 bp):
GGGATACTCCAACCCCATTATTTCACG
Found at i:939204 original size:28 final size:28
Alignment explanation
Indices: 939164--939234 Score: 81
Period size: 28 Copynumber: 2.5 Consensus size: 28
939154 ATTTTTCATA
*
939164 ATCGGGGGTACTCCAATACCATTATGTC
1 ATCGGGGATACTCCAATACCATTATGTC
* * *
939192 ATCGGGGATACTCCAATCCCGTTATTTC
1 ATCGGGGATACTCCAATACCATTATGTC
*
939220 -TGAGGGGATACTCCA
1 AT-CGGGGATACTCCA
939235 GCCCCGATTT
Statistics
Matches: 37, Mismatches: 5, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
27 1 0.03
28 36 0.97
ACGTcount: A:0.24, C:0.25, G:0.23, T:0.28
Consensus pattern (28 bp):
ATCGGGGATACTCCAATACCATTATGTC
Found at i:939217 original size:107 final size:107
Alignment explanation
Indices: 939011--939287 Score: 290
Period size: 107 Copynumber: 2.6 Consensus size: 107
939001 ACCGCAATCA
* * * * * *
939011 GGGATACTCCAACTCTGATTTTAT-TTTCAAAACACCAATTTTTCATAAT-TGGGATACTCCAAC
1 GGGATACTCCAACCCCGACTTTATATCT-AAAATACCAATTTTTCATAATCGGGGATACTCCAAC
* * * *
939074 CCCGTTATTTCATCGGGGATACTCCAGCCCCATTATTT-TCGAG
65 ACCATTATGTCATCGGGGATACTCCAACCCCATTATTTCT-GAG
* * * *** * *
939117 GGGATACTCTAACCCTGGCTTTATATCTAAAATATTGATTTTTCATAATCGGGGGTACTCCAATA
1 GGGATACTCCAACCCCGACTTTATATCTAAAATACCAATTTTTCATAATCGGGGATACTCCAACA
* *
939182 CCATTATGTCATCGGGGATACTCCAATCCCGTTATTTCTGAG
66 CCATTATGTCATCGGGGATACTCCAACCCCATTATTTCTGAG
* * * * *
939224 GGGATACTCCAGCCCCGATTTTATTTTTAAAATACCAATTTTTCACAATCGGGGATACTCCAAC
1 GGGATACTCCAACCCCGACTTTATATCTAAAATACCAATTTTTCATAATCGGGGATACTCCAAC
939288 TCCGATTTTA
Statistics
Matches: 137, Mismatches: 31, Indels: 5
0.79 0.18 0.03
Matches are distributed among these distances:
106 37 0.27
107 99 0.72
108 1 0.01
ACGTcount: A:0.27, C:0.24, G:0.16, T:0.34
Consensus pattern (107 bp):
GGGATACTCCAACCCCGACTTTATATCTAAAATACCAATTTTTCATAATCGGGGATACTCCAACA
CCATTATGTCATCGGGGATACTCCAACCCCATTATTTCTGAG
Found at i:939363 original size:51 final size:51
Alignment explanation
Indices: 939223--939390 Score: 167
Period size: 51 Copynumber: 3.3 Consensus size: 51
939213 TTATTTCTGA
* ** ** ***
939223 GGGGATACTCCAGCCCCGATTTTATTTTTAAAATACCAATTTTTCACAATC
1 GGGGATACTCCAACCCCGACCTTATTTCCAAAATATTGATTTTTCACAATC
* ** *
939274 GGGGATACTCCAACTCCGATTTTATTTCCAAAATATTGATTTCTCACAATC
1 GGGGATACTCCAACCCCGACCTTATTTCCAAAATATTGATTTTTCACAATC
* * * *
939325 GGGGATACTTCAACCCCGACCTTATTT-CTAGATCATTGATTTTTCACAATT
1 GGGGATACTCCAACCCCGACCTTATTTCCAAAAT-ATTGATTTTTCACAATC
*
939376 GGAGATACTCCAACC
1 GGGGATACTCCAACC
939391 TCGTTATTTT
Statistics
Matches: 98, Mismatches: 18, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
50 4 0.04
51 94 0.96
ACGTcount: A:0.29, C:0.24, G:0.13, T:0.34
Consensus pattern (51 bp):
GGGGATACTCCAACCCCGACCTTATTTCCAAAATATTGATTTTTCACAATC
Found at i:939525 original size:79 final size:77
Alignment explanation
Indices: 939326--939545 Score: 214
Period size: 79 Copynumber: 2.8 Consensus size: 77
939316 CTCACAATCG
* ** * * * *
939326 GGGATACTTCAACCCCGACCTTATTTCTAGATCATTGATTTT-TCACAATTGGAGATACTCCAAC
1 GGGATACTCCAACCCCGATTTTATTTCCAGAACATCGATTTTCT-ATAATTGG-GATACTCCAAC
939390 CTCGTTATTTTCGA
64 CTCGTTATTTTCGA
* * *
939404 GGGAATACTCCAACCCTGATTTTATTTTCA-AA-ATACTAATTTTCTATAATTAGGGATACTCCA
1 GGG-ATACTCCAACCCCGATTTTATTTCCAGAACAT-C-GATTTTCTATAATT-GGGATACTCCA
939467 ACC-CTGTTATTTTCGAA
62 ACCTC-GTTATTTTCG-A
* * *
939484 GGGATACTCCAACCCCGATTTTATTTCCAGAACATCGATTTTCCATCATCGGGGATACTCCA
1 GGGATACTCCAACCCCGATTTTATTTCCAGAACATCGATTTTCTATAAT-TGGGATACTCCA
939546 CCCCAATTGT
Statistics
Matches: 116, Mismatches: 16, Indels: 19
0.77 0.11 0.13
Matches are distributed among these distances:
77 2 0.02
78 5 0.04
79 97 0.84
80 10 0.09
81 2 0.02
ACGTcount: A:0.28, C:0.24, G:0.14, T:0.35
Consensus pattern (77 bp):
GGGATACTCCAACCCCGATTTTATTTCCAGAACATCGATTTTCTATAATTGGGATACTCCAACCT
CGTTATTTTCGA
Found at i:941479 original size:13 final size:13
Alignment explanation
Indices: 941461--941485 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
941451 ATGTTGCACA
941461 GTATCGATACATT
1 GTATCGATACATT
941474 GTATCGATACAT
1 GTATCGATACAT
941486 GTTGCATTGT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
GTATCGATACATT
Found at i:941480 original size:33 final size:33
Alignment explanation
Indices: 941438--941503 Score: 114
Period size: 33 Copynumber: 2.0 Consensus size: 33
941428 TACACATTTA
941438 ATTGTATCGATACATGTTGCACAGTATCGATAC
1 ATTGTATCGATACATGTTGCACAGTATCGATAC
**
941471 ATTGTATCGATACATGTTGCATTGTATCGATAC
1 ATTGTATCGATACATGTTGCACAGTATCGATAC
941504 TTGAAAAAGA
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
33 31 1.00
ACGTcount: A:0.29, C:0.17, G:0.18, T:0.36
Consensus pattern (33 bp):
ATTGTATCGATACATGTTGCACAGTATCGATAC
Found at i:941618 original size:33 final size:32
Alignment explanation
Indices: 941559--941621 Score: 90
Period size: 33 Copynumber: 1.9 Consensus size: 32
941549 AGCTAAACTT
**
941559 GTATCGATACACACAGTATGTATCGATACAAA
1 GTATCGATACACACAAAATGTATCGATACAAA
*
941591 GTATCGATACACCATAAAATGTATCGATACA
1 GTATCGATACA-CACAAAATGTATCGATACA
941622 TTGGCTTGTA
Statistics
Matches: 27, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
32 11 0.41
33 16 0.59
ACGTcount: A:0.41, C:0.19, G:0.14, T:0.25
Consensus pattern (32 bp):
GTATCGATACACACAAAATGTATCGATACAAA
Found at i:942898 original size:13 final size:13
Alignment explanation
Indices: 942880--942905 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
942870 AATTTTTTTG
942880 TGTATCGATACAT
1 TGTATCGATACAT
942893 TGTATCGATACAT
1 TGTATCGATACAT
942906 ACTTGGTGTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:949000 original size:13 final size:13
Alignment explanation
Indices: 948980--949018 Score: 62
Period size: 13 Copynumber: 3.0 Consensus size: 13
948970 ACAGTATTCT
948980 CTGTATCGATACA
1 CTGTATCGATACA
948993 -TAGTATCGATACA
1 CT-GTATCGATACA
949006 CTGTATCGATACA
1 CTGTATCGATACA
949019 AGGGGATTTT
Statistics
Matches: 24, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
12 1 0.04
13 22 0.92
14 1 0.04
ACGTcount: A:0.33, C:0.21, G:0.15, T:0.31
Consensus pattern (13 bp):
CTGTATCGATACA
Found at i:949193 original size:22 final size:21
Alignment explanation
Indices: 949150--949190 Score: 59
Period size: 22 Copynumber: 2.0 Consensus size: 21
949140 CAAATTTCTT
949150 GTTTTTCACTTCAAAATACATC
1 GTTTTTCAC-TCAAAATACATC
949172 GTTTTTCA-TCAAAAT-CATC
1 GTTTTTCACTCAAAATACATC
949191 ATCAAAAACA
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
19 4 0.21
20 7 0.37
22 8 0.42
ACGTcount: A:0.32, C:0.22, G:0.05, T:0.41
Consensus pattern (21 bp):
GTTTTTCACTCAAAATACATC
Found at i:951498 original size:13 final size:13
Alignment explanation
Indices: 951480--951504 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
951470 ATGTTGCACA
951480 GTATCGATACATT
1 GTATCGATACATT
951493 GTATCGATACAT
1 GTATCGATACAT
951505 GTTGCATTGT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
GTATCGATACATT
Found at i:951499 original size:33 final size:33
Alignment explanation
Indices: 951457--951522 Score: 114
Period size: 33 Copynumber: 2.0 Consensus size: 33
951447 TACACATTTA
951457 ATTGTATCGATACATGTTGCACAGTATCGATAC
1 ATTGTATCGATACATGTTGCACAGTATCGATAC
**
951490 ATTGTATCGATACATGTTGCATTGTATCGATAC
1 ATTGTATCGATACATGTTGCACAGTATCGATAC
951523 TTGAAAAAGA
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
33 31 1.00
ACGTcount: A:0.29, C:0.17, G:0.18, T:0.36
Consensus pattern (33 bp):
ATTGTATCGATACATGTTGCACAGTATCGATAC
Found at i:951613 original size:13 final size:13
Alignment explanation
Indices: 951595--951620 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
951585 TACACACAGT
951595 ATGTATCGATACA
1 ATGTATCGATACA
951608 ATGTATCGATACA
1 ATGTATCGATACA
951621 CCATAAAATG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:951637 original size:33 final size:32
Alignment explanation
Indices: 951577--951640 Score: 92
Period size: 33 Copynumber: 2.0 Consensus size: 32
951567 TAGCTAAACT
**
951577 TGTATCGATACACACAGTATGTATCGATACAA
1 TGTATCGATACACACAAAATGTATCGATACAA
*
951609 TGTATCGATACACCATAAAATGTATCGATACA
1 TGTATCGATACA-CACAAAATGTATCGATACA
951641 TTGGCTTGTA
Statistics
Matches: 28, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
32 12 0.43
33 16 0.57
ACGTcount: A:0.39, C:0.19, G:0.14, T:0.28
Consensus pattern (32 bp):
TGTATCGATACACACAAAATGTATCGATACAA
Found at i:956390 original size:19 final size:21
Alignment explanation
Indices: 956344--956396 Score: 74
Period size: 19 Copynumber: 2.6 Consensus size: 21
956334 TTTCAATAAT
956344 TTGTATCGATACAAACAGTAA
1 TTGTATCGATACAAACAGTAA
* *
956365 ATGTATCGATACATA-AGT-A
1 TTGTATCGATACAAACAGTAA
956384 TTGTATCGATACA
1 TTGTATCGATACA
956397 GTGTACCACT
Statistics
Matches: 29, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
19 13 0.45
20 3 0.10
21 13 0.45
ACGTcount: A:0.40, C:0.13, G:0.15, T:0.32
Consensus pattern (21 bp):
TTGTATCGATACAAACAGTAA
Found at i:956466 original size:13 final size:13
Alignment explanation
Indices: 956448--956473 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
956438 CATTATTCAA
956448 TGTATCGATACAT
1 TGTATCGATACAT
956461 TGTATCGATACAT
1 TGTATCGATACAT
956474 CGATCTTTGT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:956537 original size:20 final size:19
Alignment explanation
Indices: 956512--956585 Score: 103
Period size: 20 Copynumber: 3.7 Consensus size: 19
956502 TTTACCCAGA
956512 TGTATCGATACATTTTGCAT
1 TGTATCGATACATTTT-CAT
*
956532 TGTATCGATACATTGCTCAT
1 TGTATCGATACATT-TTCAT
*
956552 TGTATCGATACATTTTACAA
1 TGTATCGATACATTTT-CAT
956572 TGTATCGATACATT
1 TGTATCGATACATT
956586 CAGGCATTTT
Statistics
Matches: 49, Mismatches: 3, Indels: 4
0.88 0.05 0.07
Matches are distributed among these distances:
19 1 0.02
20 47 0.96
21 1 0.02
ACGTcount: A:0.28, C:0.16, G:0.14, T:0.42
Consensus pattern (19 bp):
TGTATCGATACATTTTCAT
Found at i:958936 original size:51 final size:51
Alignment explanation
Indices: 958880--959013 Score: 189
Period size: 51 Copynumber: 2.6 Consensus size: 51
958870 GTCAAGTTTC
* *
958880 CCAATTTTCCACAATCGGGGATACTCCAACCCTGGTTTTATTTTC-AAAACA
1 CCAATTTTCCACAATCGGGGATACTCCAACCC-GATTTTATTTCCAAAAACA
* * *
958931 CCAATTTTCTATAATCAGGGATACTCCAACTCCGATTTTATTTCCAAAAACA
1 CCAATTTTCCACAATCGGGGATACTCCAAC-CCGATTTTATTTCCAAAAACA
*
958983 CCAATTTTTCACAATCGGGGATACTCCAACC
1 CCAATTTTCCACAATCGGGGATACTCCAACC
959014 TCGTTAATCA
Statistics
Matches: 72, Mismatches: 9, Indels: 4
0.85 0.11 0.05
Matches are distributed among these distances:
51 38 0.53
52 34 0.47
ACGTcount: A:0.31, C:0.28, G:0.10, T:0.31
Consensus pattern (51 bp):
CCAATTTTCCACAATCGGGGATACTCCAACCCGATTTTATTTCCAAAAACA
Found at i:959066 original size:28 final size:27
Alignment explanation
Indices: 958996--959071 Score: 100
Period size: 27 Copynumber: 2.8 Consensus size: 27
958986 ATTTTTCACA
*
958996 ATCGGGGATACTCCAACCTCGTTAATC
1 ATCGGGGATACTCCAACCCCGTTAATC
*
959023 ATCGGGGATACTCCAACCCCGTT-ATT
1 ATCGGGGATACTCCAACCCCGTTAATC
*
959049 TTCGAGGGGATACTCCAACCCCG
1 ATC--GGGGATACTCCAACCCCG
959072 GCTTTATTCC
Statistics
Matches: 44, Mismatches: 3, Indels: 3
0.88 0.06 0.06
Matches are distributed among these distances:
26 4 0.09
27 22 0.50
28 18 0.41
ACGTcount: A:0.24, C:0.32, G:0.21, T:0.24
Consensus pattern (27 bp):
ATCGGGGATACTCCAACCCCGTTAATC
Found at i:959106 original size:79 final size:79
Alignment explanation
Indices: 959023--959229 Score: 342
Period size: 79 Copynumber: 2.6 Consensus size: 79
959013 CTCGTTAATC
*
959023 ATCGGGGATACTCCAACCCCGTTATTTTCGAGGGGATACTCCAACCCCGGCTTTATTCCTAAAAT
1 ATCGGGGATACTCCAACCCCGTTATTTTCGAGGGGATACTCCAACCCCGGCTTTATTCCGAAAAT
959088 ATTGATTTCTCATA
66 ATTGATTTCTCATA
* * *
959102 ATCGGGGATCCTCCAACCCCGTTATTTCCGAGGGGATACTCCAACCCCGGTTTTATTCCGAAAAT
1 ATCGGGGATACTCCAACCCCGTTATTTTCGAGGGGATACTCCAACCCCGGCTTTATTCCGAAAAT
959167 ATTGATTTCTCATA
66 ATTGATTTCTCATA
* * * *
959181 ATCGGGGATACTCCAACCCCGTTATTTTCGCGGGAAAACTCTAACCCCG
1 ATCGGGGATACTCCAACCCCGTTATTTTCGAGGGGATACTCCAACCCCG
959230 TTATTTTTGA
Statistics
Matches: 118, Mismatches: 10, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
79 118 1.00
ACGTcount: A:0.25, C:0.29, G:0.18, T:0.29
Consensus pattern (79 bp):
ATCGGGGATACTCCAACCCCGTTATTTTCGAGGGGATACTCCAACCCCGGCTTTATTCCGAAAAT
ATTGATTTCTCATA
Found at i:959249 original size:28 final size:28
Alignment explanation
Indices: 959184--959255 Score: 99
Period size: 28 Copynumber: 2.6 Consensus size: 28
959174 TCTCATAATC
*
959184 GGGGATACTCCAACCCCGTTATTTTCGC
1 GGGGATACTCCAACCCCGTTATTTTCGA
* * * *
959212 GGGAAAACTCTAACCCCGTTATTTTTGA
1 GGGGATACTCCAACCCCGTTATTTTCGA
959240 GGGGATACTCCAACCC
1 GGGGATACTCCAACCC
959256 TGATTTTATT
Statistics
Matches: 36, Mismatches: 8, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
28 36 1.00
ACGTcount: A:0.24, C:0.29, G:0.21, T:0.26
Consensus pattern (28 bp):
GGGGATACTCCAACCCCGTTATTTTCGA
Found at i:959302 original size:107 final size:107
Alignment explanation
Indices: 959116--959314 Score: 242
Period size: 107 Copynumber: 1.9 Consensus size: 107
959106 GGGATCCTCC
* * ***
959116 AACCCCGTTATTTCCGAGGGGATACTCCAACCCCGGTTTTATTCCGAAAATATTGATTTCTCATA
1 AACCCCGTTATTTCCGAGGGGATACTCCAACCCCGATTTTATTCCGAAAACACCAATTTCTCATA
*
959181 ATCGGGGATACTCCAACCCCGTTATTTTCGCGGGAAAACTCT
66 ATCAGGGATACTCCAACCCCGTTATTTTCGCGGGAAAACTCT
** * *
959223 AACCCCGTTATTTTTGAGGGGATACTCCAACCCTGATTTTATTTTC-AAAACACCAATTT-TCTA
1 AACCCCGTTATTTCCGAGGGGATACTCCAACCCCGATTTTA-TTCCGAAAACACCAATTTCTC-A
**
959286 TAA-CTAGGGATACTCCAACCTTGTTATTT
64 TAATC-AGGGATACTCCAACCCCGTTATTT
959315 CCAAGAGGAT
Statistics
Matches: 77, Mismatches: 12, Indels: 6
0.81 0.13 0.06
Matches are distributed among these distances:
106 3 0.04
107 71 0.92
108 3 0.04
ACGTcount: A:0.27, C:0.25, G:0.15, T:0.33
Consensus pattern (107 bp):
AACCCCGTTATTTCCGAGGGGATACTCCAACCCCGATTTTATTCCGAAAACACCAATTTCTCATA
ATCAGGGATACTCCAACCCCGTTATTTTCGCGGGAAAACTCT
Found at i:959304 original size:186 final size:185
Alignment explanation
Indices: 958948--959388 Score: 455
Period size: 186 Copynumber: 2.4 Consensus size: 185
958938 TCTATAATCA
* *
958948 GGGATACTCCAACTCCGATTTTATTTCCAAAAACACCAATTTTTCACAATCGGGGATACTCCAAC
1 GGGATACTCCAACCCCGATTTTA-TTCCAAAAACACCAATTTCTCACAATCGGGGATACTCCAAC
* * *
959013 CTCGTTAATCATCGGGGATACTCCAACCCCGTTATTTTCGAGGGGATACTCCAACCCCGGCTTTA
65 CCCGTTAATCATCGGGGAAACTCCAACCCCGTTATTTTCGAGGGGATACTCCAACCCCGACTTTA
* *** * * *
959078 TTCCTAAAATATTGATTTCTCATAATCGGGGATCCTCCAACCCCGTTATTTCCGAG
130 TTCCTAAAACACCAATTTCTCATAATCAGGGATACTCCAACCCCGTTATTTCCAAG
* * * *** *
959134 GGGATACTCCAACCCCGGTTTTATTCCGAAAATATTGATTTCTCATAATCGGGGATACTCCAACC
1 GGGATACTCCAACCCCGATTTTATTCCAAAAACACCAATTTCTCACAATCGGGGATACTCCAACC
** * * * *
959199 CCGTT-ATTTTCGCGGGAAAACTCTAACCCCGTTATTTTTGAGGGGATACTCCAACCCTGATTTT
66 CCGTTAATCATCG-GGG-AAACTCCAACCCCGTTATTTTCGAGGGGATACTCCAACCCCGACTTT
* **
959263 ATT-TTCAAAACACCAATTT-TCTATAA-CTAGGGATACTCCAACCTTGTTATTTCCAAG
129 ATTCCT-AAAACACCAATTTCTC-ATAATC-AGGGATACTCCAACCCCGTTATTTCCAAG
* * * *
959320 AGGATACTCCAACCCCGATTTTATTTCC-AGAACATCGATTT-TCCACAATCAGGGG-TACTCCA
1 GGGATACTCCAACCCCGATTTTA-TTCCAAAAACACCAATTTCT-CACAATC-GGGGATACTCCA
*
959382 GCCCCGT
63 ACCCCGT
959389 CGTCATCTCC
Statistics
Matches: 212, Mismatches: 35, Indels: 16
0.81 0.13 0.06
Matches are distributed among these distances:
184 5 0.02
185 47 0.22
186 152 0.72
187 8 0.04
ACGTcount: A:0.27, C:0.27, G:0.15, T:0.30
Consensus pattern (185 bp):
GGGATACTCCAACCCCGATTTTATTCCAAAAACACCAATTTCTCACAATCGGGGATACTCCAACC
CCGTTAATCATCGGGGAAACTCCAACCCCGTTATTTTCGAGGGGATACTCCAACCCCGACTTTAT
TCCTAAAACACCAATTTCTCATAATCAGGGATACTCCAACCCCGTTATTTCCAAG
Found at i:959334 original size:107 final size:106
Alignment explanation
Indices: 959106--959336 Score: 234
Period size: 107 Copynumber: 2.2 Consensus size: 106
959096 CTCATAATCG
* * * ***
959106 GGGATCCTCCAACCCCGTTATTTCCGAGGGGATACTCCAACCCCGGTTTTATTCCGAAAATATTG
1 GGGATACTCCAACCCCGTTATTTCCGAGGGGATACTCCAACCCCGATTTTATTCCGAAAACACCA
* * **
959171 ATTTCTCATAATCGGGGATACTCCAACCCCGTTATTTTCGC
66 ATTTCTCATAATCAGGGATACTCCAACCCCGTTATTTCCAA
* * ** * *
959212 GGGAAAACTCTAACCCCGTTATTTTTGAGGGGATACTCCAACCCTGATTTTATTTTC-AAAACAC
1 GGG-ATACTCCAACCCCGTTATTTCCGAGGGGATACTCCAACCCCGATTTTA-TTCCGAAAACAC
**
959276 CAATTT-TCTATAA-CTAGGGATACTCCAACCTTGTTATTTCCAA
64 CAATTTCTC-ATAATC-AGGGATACTCCAACCCCGTTATTTCCAA
959319 GAGGATACTCCAACCCCG
1 G-GGATACTCCAACCCCG
959337 ATTTTATTTC
Statistics
Matches: 100, Mismatches: 20, Indels: 9
0.78 0.16 0.07
Matches are distributed among these distances:
106 6 0.06
107 89 0.89
108 5 0.05
ACGTcount: A:0.26, C:0.27, G:0.16, T:0.30
Consensus pattern (106 bp):
GGGATACTCCAACCCCGTTATTTCCGAGGGGATACTCCAACCCCGATTTTATTCCGAAAACACCA
ATTTCTCATAATCAGGGATACTCCAACCCCGTTATTTCCAA
Found at i:960680 original size:77 final size:77
Alignment explanation
Indices: 960590--960745 Score: 240
Period size: 77 Copynumber: 2.0 Consensus size: 77
960580 GAATACGCTA
* * **
960590 CGTCCCTCTTACTATGACAAGATGGTAGGAAATGCCACAAAAAATTTCTCTAACCTTGTCATCTC
1 CGTCCCCCCTACTATGACAAGATGGTAGGAAACACCACAAAAAATTTCTCTAACCTTGTCATCTC
960655 TAGGGAAATGAT
66 TAGGGAAATGAT
* * *
960667 CGTCCCCCCTACTATGACAAGCTGGTAGGAAACACCACAAAAAATTTCTCTGACCTTGTCATCTT
1 CGTCCCCCCTACTATGACAAGATGGTAGGAAACACCACAAAAAATTTCTCTAACCTTGTCATCTC
*
960732 TGGGGAAATGAT
66 TAGGGAAATGAT
960744 CG
1 CG
960746 AGAGCCCCTA
Statistics
Matches: 71, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
77 71 1.00
ACGTcount: A:0.31, C:0.24, G:0.18, T:0.27
Consensus pattern (77 bp):
CGTCCCCCCTACTATGACAAGATGGTAGGAAACACCACAAAAAATTTCTCTAACCTTGTCATCTC
TAGGGAAATGAT
Found at i:962955 original size:20 final size:20
Alignment explanation
Indices: 962899--962954 Score: 62
Period size: 20 Copynumber: 2.8 Consensus size: 20
962889 AAAATGAGAT
962899 GAAAAAAAATGGAAAAAGCAA
1 GAAAAAAAAT-GAAAAAGCAA
* *
962920 -AAGAAAAGATGAAAAATCAA
1 GAA-AAAAAATGAAAAAGCAA
962940 GAAAAAAAAT-AAAAA
1 GAAAAAAAATGAAAAA
962955 AAAAGGGTAT
Statistics
Matches: 30, Mismatches: 3, Indels: 6
0.77 0.08 0.15
Matches are distributed among these distances:
19 5 0.17
20 17 0.57
21 8 0.27
ACGTcount: A:0.75, C:0.04, G:0.14, T:0.07
Consensus pattern (20 bp):
GAAAAAAAATGAAAAAGCAA
Found at i:963722 original size:15 final size:16
Alignment explanation
Indices: 963702--963731 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
963692 AACATCCTTT
963702 TGAAC-TTGATCTTGA
1 TGAACTTTGATCTTGA
963717 TGAACTTTGATCTTG
1 TGAACTTTGATCTTG
963732 TTGGGCCAAT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 5 0.36
16 9 0.64
ACGTcount: A:0.23, C:0.13, G:0.20, T:0.43
Consensus pattern (16 bp):
TGAACTTTGATCTTGA
Found at i:965467 original size:32 final size:31
Alignment explanation
Indices: 965431--965527 Score: 142
Period size: 31 Copynumber: 3.1 Consensus size: 31
965421 CCAAAATCCT
*
965431 ACACAAGTTGGTGGCAACCCCTTCTAAAGCCC
1 ACACAAGTCGGTGGCAA-CCCTTCTAAAGCCC
* *
965463 ACACAAGTCAGTGGCAACTCTTCTAAAGCCC
1 ACACAAGTCGGTGGCAACCCTTCTAAAGCCC
965494 ACACAAGTCGGTGGCAACCC-TCTCAAAGCCC
1 ACACAAGTCGGTGGCAACCCTTCT-AAAGCCC
965525 ACA
1 ACA
965528 TAAATTGGAG
Statistics
Matches: 59, Mismatches: 5, Indels: 3
0.88 0.07 0.04
Matches are distributed among these distances:
30 3 0.05
31 41 0.69
32 15 0.25
ACGTcount: A:0.31, C:0.35, G:0.18, T:0.16
Consensus pattern (31 bp):
ACACAAGTCGGTGGCAACCCTTCTAAAGCCC
Found at i:965621 original size:75 final size:75
Alignment explanation
Indices: 965482--965622 Score: 169
Period size: 75 Copynumber: 1.9 Consensus size: 75
965472 AGTGGCAACT
* *
965482 CTTCTAAAGCCCACACAAGTCGGTGGCAACCCTCTCAAAGCCCACATAAATTGGAGGCATCCCTT
1 CTTCTAAAGCCCACACAAGTCGGTGGCAACCCTCTCAAAGCCCACACAAATTGGAGGCAACCCTT
965547 TCTTTTTTCC
66 TCTTTTTTCC
* * * * * * *
965557 CTTCTAAAGCCCATATAAG-CTGGTGGCACCCCTTTTAAAGCCCATACAAGTTGGTA-GCAACCC
1 CTTCTAAAGCCCACACAAGTC-GGTGGCAACCCTCTCAAAGCCCACACAAATTGG-AGGCAACCC
965620 TTT
64 TTT
965623 TAAAGCCCAC
Statistics
Matches: 55, Mismatches: 9, Indels: 4
0.81 0.13 0.06
Matches are distributed among these distances:
74 1 0.02
75 53 0.96
76 1 0.02
ACGTcount: A:0.26, C:0.31, G:0.16, T:0.27
Consensus pattern (75 bp):
CTTCTAAAGCCCACACAAGTCGGTGGCAACCCTCTCAAAGCCCACACAAATTGGAGGCAACCCTT
TCTTTTTTCC
Found at i:965723 original size:63 final size:63
Alignment explanation
Indices: 965555--965974 Score: 381
Period size: 63 Copynumber: 6.7 Consensus size: 63
965545 TTTCTTTTTT
* * * * * ** *
965555 CCCTTCT-AAAGCCCATATAAG-CTGGTGGCACCCCTTTTAAAGCCCATACAAGTTGGTAGCAA
1 CCCTTCTCAAAGCCCACACAAGTC-GGTGGCAACCCTTCTAAAGCCCACACAAGTCAGTGGCAA
* * ** * * * *
965617 CCCTT-TTAAAGCCCACACAAGTCAGTGAAAAACCTTTTTAAAGCCAACACAAG-CTAGTGGTAA
1 CCCTTCTCAAAGCCCACACAAGTCGGTG-GCAACCCTTCTAAAGCCCACACAAGTC-AGTGGCAA
** * * *
965680 CCCTTCTCAAAGCCCACACAAGTTAGTGGCACCCCTTCGAAAGCCCACATAAGTC-GATGGCAA
1 CCCTTCTCAAAGCCCACACAAGTCGGTGGCAACCCTTCTAAAGCCCACACAAGTCAG-TGGCAA
* *
965743 CCCTTCTCTAAAG-CC-CACAAGTTGGTGGC-ACCCTTCTCTAAAGCCCACACAAGTCAGTGACA
1 CCCTTCTC-AAAGCCCACACAAGTCGGTGGCAACCC-T-TCTAAAGCCCACACAAGTCAGTGGCA
965805 A
63 A
* ** * *
965806 CCTTTCTCTAAAGCCCACACAAGTCGGTTTCAACCCTTCTTAAAGCCCACACAAGTCGGTGACAA
1 CCCTTCTC-AAAGCCCACACAAGTCGGTGGCAACCCTTC-TAAAGCCCACACAAGTCAGTGGCAA
* * *
965871 CCCTTCT-AAAGCCCACACAAGTCGGTGGTAACCCTTCTAAAGCCCACACAAGTCAATGGTAA
1 CCCTTCTCAAAGCCCACACAAGTCGGTGGCAACCCTTCTAAAGCCCACACAAGTCAGTGGCAA
* **
965933 CCCTTCTTTAAAGCCCACACAAGTCGACGGCAACCCTTCTAA
1 CCCTTC-TCAAAGCCCACACAAGTCGGTGGCAACCCTTCTAA
965975 GCCTAATGTC
Statistics
Matches: 296, Mismatches: 45, Indels: 32
0.79 0.12 0.09
Matches are distributed among these distances:
61 4 0.01
62 62 0.21
63 124 0.42
64 60 0.20
65 42 0.14
66 4 0.01
ACGTcount: A:0.31, C:0.32, G:0.15, T:0.21
Consensus pattern (63 bp):
CCCTTCTCAAAGCCCACACAAGTCGGTGGCAACCCTTCTAAAGCCCACACAAGTCAGTGGCAA
Found at i:965923 original size:31 final size:31
Alignment explanation
Indices: 965555--965974 Score: 373
Period size: 31 Copynumber: 13.3 Consensus size: 31
965545 TTTCTTTTTT
* * *
965555 CCCTTCTAAAGCCCATATAAG-CTGGTGGCAC
1 CCCTTCTAAAGCCCACACAAGTC-GGTGGCAA
* * * *
965586 CCCTTTTAAAGCCCATACAAGTTGGTAGCAA
1 CCCTTCTAAAGCCCACACAAGTCGGTGGCAA
* * **
965617 CCCTTTTAAAGCCCACACAAGTCAGTGAAAAA
1 CCCTTCTAAAGCCCACACAAGTCGGTG-GCAA
* * * * *
965649 CCTTTTTAAAGCCAACACAAG-CTAGTGGTAA
1 CCCTTCTAAAGCCCACACAAGTC-GGTGGCAA
** *
965680 CCCTTCTCAAAGCCCACACAAGTTAGTGGCAC
1 CCCTTCT-AAAGCCCACACAAGTCGGTGGCAA
* * *
965712 CCCTTCGAAAGCCCACATAAGTCGATGGCAA
1 CCCTTCTAAAGCCCACACAAGTCGGTGGCAA
*
965743 CCCTTCTCTAAAG-CC-CACAAGTTGGTGGC-A
1 CCC-T-TCTAAAGCCCACACAAGTCGGTGGCAA
* *
965773 CCCTTCTCTAAAGCCCACACAAGTCAGTGACAA
1 CCC-T-TCTAAAGCCCACACAAGTCGGTGGCAA
* **
965806 CCTTTCTCTAAAGCCCACACAAGTCGGTTTCAA
1 CC-CT-TCTAAAGCCCACACAAGTCGGTGGCAA
*
965839 CCCTTCTTAAAGCCCACACAAGTCGGTGACAA
1 CCCTTC-TAAAGCCCACACAAGTCGGTGGCAA
*
965871 CCCTTCTAAAGCCCACACAAGTCGGTGGTAA
1 CCCTTCTAAAGCCCACACAAGTCGGTGGCAA
** *
965902 CCCTTCTAAAGCCCACACAAGTCAATGGTAA
1 CCCTTCTAAAGCCCACACAAGTCGGTGGCAA
**
965933 CCCTTCTTTAAAGCCCACACAAGTCGACGGCAA
1 CCCTTC--TAAAGCCCACACAAGTCGGTGGCAA
965966 CCCTTCTAA
1 CCCTTCTAA
965975 GCCTAATGTC
Statistics
Matches: 327, Mismatches: 48, Indels: 28
0.81 0.12 0.07
Matches are distributed among these distances:
30 14 0.04
31 154 0.47
32 94 0.29
33 65 0.20
ACGTcount: A:0.31, C:0.32, G:0.15, T:0.21
Consensus pattern (31 bp):
CCCTTCTAAAGCCCACACAAGTCGGTGGCAA
Found at i:966180 original size:61 final size:58
Alignment explanation
Indices: 965983--966303 Score: 217
Period size: 61 Copynumber: 5.5 Consensus size: 58
965973 AAGCCTAATG
* * * * * * *
965983 TCGTTGGCTTTGAATCAACACATTGGCACTTGTTAAATCTTCTTTCTTTAAGTCTGATA
1 TCGTTGGCCTTGAATCAACATATTGGCACTT-ATCATTCTTCTATCTTTAAGTCCGATA
* * * * *
966042 TCGCTGGCCTTGAATCAACATATTGGCACCTT-T-A--C--C-ATTTTTAAGCCCAATG
1 TCGTTGGCCTTGAATCAACATATTGGCA-CTTATCATTCTTCTATCTTTAAGTCCGATA
* * * * * **
966094 TCGCTGGCCTTTAATCAGCAAATTGGCATTCTTCTCATTCTTCTAATCTTTAAGTCTAATA
1 TCGTTGGCCTTGAATCAACATATTGGCA--CTTATCATTCTTCT-ATCTTTAAGTCCGATA
* * * * *
966155 TCGTTGGCCTTGAATCAGCATATTGGTACCTTAATCATTTTTCTTAT-TTTCAAGCCCGATG
1 TCGTTGGCCTTGAATCAACATATTGGCA-CTT-ATCATTCTTC-TATCTTT-AAGTCCGATA
* * * * *
966216 TCGTTGGCCTTGAATCAACACATTAGCACTTGTCAAATCTTCTTTCTTTAAGTCCGATA
1 TCGTTGGCCTTGAATCAACATATTGGCACTTATC-ATTCTTCTATCTTTAAGTCCGATA
**
966275 TCACTGGCCTTGAATCAACATATTGGCAC
1 TCGTTGGCCTTGAATCAACATATTGGCAC
966304 CTTTACCATT
Statistics
Matches: 205, Mismatches: 42, Indels: 30
0.74 0.15 0.11
Matches are distributed among these distances:
52 35 0.17
53 4 0.02
54 1 0.00
55 2 0.01
57 2 0.01
58 1 0.00
59 63 0.31
60 20 0.10
61 76 0.37
62 1 0.00
ACGTcount: A:0.24, C:0.23, G:0.15, T:0.38
Consensus pattern (58 bp):
TCGTTGGCCTTGAATCAACATATTGGCACTTATCATTCTTCTATCTTTAAGTCCGATA
Found at i:966297 original size:120 final size:118
Alignment explanation
Indices: 966080--966364 Score: 305
Period size: 120 Copynumber: 2.4 Consensus size: 118
966070 CCTTTACCAT
* * * * *
966080 TTTTAAGCCCAATGTCGCTGGCCTTTAATCAGCAAATTGGCATTCTTCTCATTCTTCTAATCTTT
1 TTTTAAGCCCAATGTCGCTGGCCTTGAATCAACACATTAGCA-TCTTCTCAATCTTCTAATCTTT
* ** * * *
966145 AAGTCTAATATCGTTGGCCTTGAATCAGCATATTGGTACCTTAATCATTTTTCTTA
65 AAGTCCAATATCACTGGCCTTGAATCAACATATTGGCACCTTAACCA-TTTT-TTA
* * * *
966201 TTTTCAAGCCCGATGTCGTTGGCCTTGAATCAACACATTAGCA-CTTGTCAAATCTTCT-TTCTT
1 TTTT-AAGCCCAATGTCGCTGGCCTTGAATCAACACATTAGCATCTTCTC-AATCTTCTAATCTT
* *
966264 TAAGTCCGATATCACTGGCCTTGAATCAACATATTGGCACCTTTACCATTTTTTA
64 TAAGTCCAATATCACTGGCCTTGAATCAACATATTGGCACCTTAACCATTTTTTA
*
966319 ----AA-CCCTATGTCGCTGGCCTTGAATCAACACATTAGCATTCTTCTCA
1 TTTTAAGCCCAATGTCGCTGGCCTTGAATCAACACATTAGCA-TCTTCTCA
966365 TCCTTATCAT
Statistics
Matches: 140, Mismatches: 20, Indels: 16
0.80 0.11 0.09
Matches are distributed among these distances:
112 33 0.24
113 3 0.02
114 5 0.04
118 3 0.02
119 4 0.03
120 49 0.35
121 11 0.08
122 32 0.23
ACGTcount: A:0.25, C:0.24, G:0.13, T:0.38
Consensus pattern (118 bp):
TTTTAAGCCCAATGTCGCTGGCCTTGAATCAACACATTAGCATCTTCTCAATCTTCTAATCTTTA
AGTCCAATATCACTGGCCTTGAATCAACATATTGGCACCTTAACCATTTTTTA
Found at i:966410 original size:112 final size:111
Alignment explanation
Indices: 965979--966425 Score: 393
Period size: 112 Copynumber: 3.9 Consensus size: 111
965969 TTCTAAGCCT
* * * * ** *
965979 AATGTCGTTGGCTTTGAATCAACACATTGGCACTTGTT-AAATCTTCTTTCTTTAAGTCTGATAT
1 AATGTCGCTGGCCTTGAATCAACACATTAGCA-TTCTTCTCATCTTCTATCTTTAAGTC-GATAT
* *
966043 CGCTGGCCTTGAATCAACATATTGGCACCTTTACCA-TTTTTAAGCCC
64 CGTTGGCCTTGAATCAACATATTGGCACCTTTACCATTTTTTAAACCC
* * * * *
966090 AATGTCGCTGGCCTTTAATCAGCAAATTGGCATTCTTCTCATTCTTCTAATCTTTAAGTCTAATA
1 AATGTCGCTGGCCTTGAATCAACACATTAGCATTCTTCTCA-TCTTCT-ATCTTTAAGTC-GATA
* * * *
966155 TCGTTGGCCTTGAATCAGCATATTGGTACCTTAATCATTTTTCTTATTTTCAAGCCC
63 TCGTTGGCCTTGAATCAACATATTGGCACCTTTACCA-TTTT-TTA-----AA-CCC
* * * *
966212 GATGTCGTTGGCCTTGAATCAACACATTAGCA--CTTGTCAAATCTTCTTTCTTTAAGTCCGATA
1 AATGTCGCTGGCCTTGAATCAACACATTAGCATTCTTCTC--ATCTTCTATCTTTAAGT-CGATA
**
966275 TCACTGGCCTTGAATCAACATATTGGCACCTTTACCATTTTTTAAACCC
63 TCGTTGGCCTTGAATCAACATATTGGCACCTTTACCATTTTTTAAACCC
* * *
966324 TATGTCGCTGGCCTTGAATCAACACATTAGCATTCTTCTCATCCTTATCATCTTCAAGCTCGAT-
1 AATGTCGCTGGCCTTGAATCAACACATTAGCATTCTTCTCAT-CTTCT-ATCTTTAAG-TCGATA
** * * *
966388 T-GTTGGCAGTGAATCAGCATATTAGCACCTTTATCATT
63 TCGTTGGCCTTGAATCAACATATTGGCACCTTTACCATT
966426 CTTTGCATCT
Statistics
Matches: 272, Mismatches: 44, Indels: 39
0.77 0.12 0.11
Matches are distributed among these distances:
110 4 0.01
111 28 0.10
112 71 0.26
113 53 0.19
114 16 0.06
115 4 0.01
116 3 0.01
118 3 0.01
119 4 0.01
120 48 0.18
121 8 0.03
122 30 0.11
ACGTcount: A:0.25, C:0.23, G:0.14, T:0.38
Consensus pattern (111 bp):
AATGTCGCTGGCCTTGAATCAACACATTAGCATTCTTCTCATCTTCTATCTTTAAGTCGATATCG
TTGGCCTTGAATCAACATATTGGCACCTTTACCATTTTTTAAACCC
Found at i:966507 original size:52 final size:52
Alignment explanation
Indices: 966426--966579 Score: 184
Period size: 52 Copynumber: 3.0 Consensus size: 52
966416 CTTTATCATT
* * **
966426 CTTTG-CATCTTTAAGTCTAATGTCACTAGCCTTGAATCAACATATTGGTGC
1 CTTTGTCATCTTTAAGTCTAATGTCGCTAGCCTTGAATCAGCATATTGGCAC
* *
966477 CTTTGTCATCTTTAAGTCTAATGTCGCTAGCCTCGAATCAGCACATTGGCAC
1 CTTTGTCATCTTTAAGTCTAATGTCGCTAGCCTTGAATCAGCATATTGGCAC
* * * * * * *
966529 CTTTGTCATCGTTAAGCCCAATATTGCTGGCCTTGAATTAGCATATTGGCA
1 CTTTGTCATCTTTAAGTCTAATGTCGCTAGCCTTGAATCAGCATATTGGCA
966580 TTTTTATTAT
Statistics
Matches: 87, Mismatches: 15, Indels: 1
0.84 0.15 0.01
Matches are distributed among these distances:
51 5 0.06
52 82 0.94
ACGTcount: A:0.24, C:0.23, G:0.18, T:0.35
Consensus pattern (52 bp):
CTTTGTCATCTTTAAGTCTAATGTCGCTAGCCTTGAATCAGCATATTGGCAC
Found at i:967410 original size:20 final size:21
Alignment explanation
Indices: 967365--967418 Score: 67
Period size: 20 Copynumber: 2.6 Consensus size: 21
967355 TTCTACAATT
*
967365 TGTATCGATACAAATAGTACA
1 TGTATCGATACATATAGTACA
967386 TGTATCGATACATA-AGTGA-A
1 TGTATCGATACATATAGT-ACA
*
967406 TGTATTGATACAT
1 TGTATCGATACAT
967419 GTTTAAAATG
Statistics
Matches: 30, Mismatches: 2, Indels: 3
0.86 0.06 0.09
Matches are distributed among these distances:
20 16 0.53
21 14 0.47
ACGTcount: A:0.39, C:0.11, G:0.17, T:0.33
Consensus pattern (21 bp):
TGTATCGATACATATAGTACA
Found at i:967511 original size:20 final size:20
Alignment explanation
Indices: 967462--967538 Score: 93
Period size: 20 Copynumber: 3.8 Consensus size: 20
967452 CTGCTAAGGA
*
967462 AATGTATCGATACATGCTTAC
1 AATGTATCGATACATTCTT-C
*
967483 AACTGTATCGATAGATT-TCTC
1 AA-TGTATCGATACATTCT-TC
*
967504 AGTGTATCGATACATTCTTC
1 AATGTATCGATACATTCTTC
967524 AATGTATCGATACAT
1 AATGTATCGATACAT
967539 GTAGGCAAAT
Statistics
Matches: 48, Mismatches: 5, Indels: 7
0.80 0.08 0.12
Matches are distributed among these distances:
20 29 0.60
21 6 0.12
22 13 0.27
ACGTcount: A:0.31, C:0.18, G:0.14, T:0.36
Consensus pattern (20 bp):
AATGTATCGATACATTCTTC
Done.