Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold215
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 2124891
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
File 8 of 16
Found at i:1145445 original size:14 final size:14
Alignment explanation
Indices: 1145416--1145459 Score: 65
Period size: 14 Copynumber: 3.3 Consensus size: 14
1145406 ATTTTTTTAA
1145416 TTTTAAAAAATA--
1 TTTTAAAAAATATT
1145428 TTTTAAAAAATATT
1 TTTTAAAAAATATT
*
1145442 TTTTAAAATATATT
1 TTTTAAAAAATATT
1145456 TTTT
1 TTTT
1145460 TACGTGTGTT
Statistics
Matches: 29, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
12 12 0.41
14 17 0.59
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (14 bp):
TTTTAAAAAATATT
Found at i:1146048 original size:165 final size:165
Alignment explanation
Indices: 1145748--1146197 Score: 494
Period size: 165 Copynumber: 2.7 Consensus size: 165
1145738 TTTTTTATTA
* * *
1145748 AAATTCGAAAGATGAGACTGATGTACGAATTTTGTTTTTGAAT-AA-ATGATAAATGCATAGATT
1 AAATTCGAAAGATGAGACTAATGCATGAATTTTG-TTTTGAATAAATATGATAAATGCATAGATT
* * * * * * * *
1145811 CTTAACGGAAATTAGATT-TTTTTTATATGAAATAAGTTGATAAGATTAATGCATGGATTGTAAA
65 CTTAATGGGAATCAAATTCTTTTTGATATGAAATAAATTGATAAAATTAATGCATGAATTGTAAA
* * * **
1145875 TGTCAGACTGCAAAGAATAGACTAATGTATGGATTG
130 TATCAGACTGCAAAGAATACACTAATGCATAAATTG
* * * ** *
1145911 GAGTTCGAAAGATGGGACTAATGCATGAATTTTGTTTTCGAATAAATATGATAAATGTGTATATT
1 AAATTCGAAAGATGAGACTAATGCATGAATTTTGTTTT-GAATAAATATGATAAATGCATAGATT
* *
1145976 CTTAATGGGAATCAAATTCTTTTTGATAAGAAATAAATTG-TAAAATTAATTCATGAATTGTAAA
65 CTTAATGGGAATCAAATTCTTTTTGATATGAAATAAATTGATAAAATTAATGCATGAATTGTAAA
* *
1146040 TATCAGACTGTAAGGAATACACTAATGCATAAATTG
130 TATCAGACTGCAAAGAATACACTAATGCATAAATTG
* * * *
1146076 AAATTTGAAAGATAAGACTAATGCATGGATTTTGTTTTGAAATAAATATGATTAATGCATAGATT
1 AAATTCGAAAGATGAGACTAATGCATGAATTTTGTTTTG-AATAAATATGATAAATGCATAGATT
* * * * * * * * *
1146141 GTTGATGGGAATCACATTCCTTCTGATATGAAAGAAGTTGATAAGACTAATGCATGA
65 CTTAATGGGAATCAAATTCTTTTTGATATGAAATAAATTGATAAAATTAATGCATGA
1146198 TGCATAAATT
Statistics
Matches: 234, Mismatches: 47, Indels: 9
0.81 0.16 0.03
Matches are distributed among these distances:
162 4 0.02
163 32 0.14
164 3 0.01
165 164 0.70
166 31 0.13
ACGTcount: A:0.39, C:0.08, G:0.19, T:0.35
Consensus pattern (165 bp):
AAATTCGAAAGATGAGACTAATGCATGAATTTTGTTTTGAATAAATATGATAAATGCATAGATTC
TTAATGGGAATCAAATTCTTTTTGATATGAAATAAATTGATAAAATTAATGCATGAATTGTAAAT
ATCAGACTGCAAAGAATACACTAATGCATAAATTG
Found at i:1146429 original size:92 final size:92
Alignment explanation
Indices: 1146265--1146461 Score: 265
Period size: 92 Copynumber: 2.1 Consensus size: 92
1146255 TAATGTATGA
* ** *
1146265 ATTGTAAATGTCAGACTACAAGGATTAGACTAATACATGAATTGTATTTAAGAATTTGAATCTTT
1 ATTGTAAATGTCAGACTACAAGGATTAGACTAATACATGAATTATATTTAAGAATCCGAATCCTT
1146330 TTCGTAGA-AAGAAA-AAAAAGTTGATTG
66 TTCGTAGACAA-AAAGAAAAA-TTGATTG
* * *
1146357 ATTGTAAATGTCAGACTACAAGGATTAGACTAATGCAT-AGATTATATTTGAGAATCCGATTCCT
1 ATTGTAAATGTCAGACTACAAGGATTAGACTAATACATGA-ATTATATTTAAGAATCCGAATCCT
*
1146421 TTTGGTAGACAAAAAGAAAAATTGATTG
65 TTTCGTAGACAAAAAGAAAAATTGATTG
*
1146449 ATTATAAATGTCA
1 ATTGTAAATGTCA
1146462 CAGTTGAAAG
Statistics
Matches: 93, Mismatches: 9, Indels: 6
0.86 0.08 0.06
Matches are distributed among these distances:
91 1 0.01
92 85 0.91
93 7 0.08
ACGTcount: A:0.41, C:0.09, G:0.17, T:0.33
Consensus pattern (92 bp):
ATTGTAAATGTCAGACTACAAGGATTAGACTAATACATGAATTATATTTAAGAATCCGAATCCTT
TTCGTAGACAAAAAGAAAAATTGATTG
Found at i:1147310 original size:20 final size:20
Alignment explanation
Indices: 1147285--1147339 Score: 74
Period size: 20 Copynumber: 2.8 Consensus size: 20
1147275 GTTGGGCTCA
* *
1147285 ATGTATCGATACATTTCACC
1 ATGTATCGATACAATCCACC
**
1147305 ATGTATCGATACAATCCTTC
1 ATGTATCGATACAATCCACC
1147325 ATGTATCGATACAAT
1 ATGTATCGATACAAT
1147340 GTATCGATAC
Statistics
Matches: 31, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 31 1.00
ACGTcount: A:0.33, C:0.22, G:0.11, T:0.35
Consensus pattern (20 bp):
ATGTATCGATACAATCCACC
Found at i:1147343 original size:13 final size:13
Alignment explanation
Indices: 1147325--1147354 Score: 60
Period size: 13 Copynumber: 2.3 Consensus size: 13
1147315 ACAATCCTTC
1147325 ATGTATCGATACA
1 ATGTATCGATACA
1147338 ATGTATCGATACA
1 ATGTATCGATACA
1147351 ATGT
1 ATGT
1147355 GAGTTTTAGC
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 17 1.00
ACGTcount: A:0.37, C:0.13, G:0.17, T:0.33
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:1155973 original size:33 final size:33
Alignment explanation
Indices: 1155931--1155994 Score: 94
Period size: 33 Copynumber: 1.9 Consensus size: 33
1155921 ATTCCCAGAT
1155931 GTATCGATACAAAGA-TCAATGTATCGATACAAA
1 GTATCGATACAAAGAGT-AATGTATCGATACAAA
**
1155964 GTATCGATACATTGAGTAATGTATCGATACA
1 GTATCGATACAAAGAGTAATGTATCGATACA
1155995 TTTTCTTGGC
Statistics
Matches: 28, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
33 27 0.96
34 1 0.04
ACGTcount: A:0.41, C:0.14, G:0.17, T:0.28
Consensus pattern (33 bp):
GTATCGATACAAAGAGTAATGTATCGATACAAA
Found at i:1156050 original size:19 final size:19
Alignment explanation
Indices: 1156026--1156069 Score: 88
Period size: 19 Copynumber: 2.3 Consensus size: 19
1156016 AGCGATACAT
1156026 TGTATCGATACAACACTTA
1 TGTATCGATACAACACTTA
1156045 TGTATCGATACAACACTTA
1 TGTATCGATACAACACTTA
1156064 TGTATC
1 TGTATC
1156070 TATATAGTTA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 25 1.00
ACGTcount: A:0.34, C:0.20, G:0.11, T:0.34
Consensus pattern (19 bp):
TGTATCGATACAACACTTA
Found at i:1157065 original size:13 final size:13
Alignment explanation
Indices: 1157047--1157081 Score: 52
Period size: 13 Copynumber: 2.7 Consensus size: 13
1157037 AATAGTACTG
1157047 TATCGATACACTA
1 TATCGATACACTA
* *
1157060 TATCGATACATTG
1 TATCGATACACTA
1157073 TATCGATAC
1 TATCGATAC
1157082 TAAGATCATT
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
13 20 1.00
ACGTcount: A:0.34, C:0.20, G:0.11, T:0.34
Consensus pattern (13 bp):
TATCGATACACTA
Found at i:1157318 original size:30 final size:30
Alignment explanation
Indices: 1157284--1157340 Score: 80
Period size: 30 Copynumber: 1.9 Consensus size: 30
1157274 CATCAACAAT
1157284 TAAGAATAATCAACAAAAATCA-CAAAATCA
1 TAAGAATAATCAA-AAAAATCATCAAAATCA
* *
1157314 TAAGATTAATCAAATAAATCATCAAAA
1 TAAGAATAATCAAAAAAATCATCAAAA
1157341 GTGCAACATA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
29 7 0.29
30 17 0.71
ACGTcount: A:0.61, C:0.14, G:0.04, T:0.21
Consensus pattern (30 bp):
TAAGAATAATCAAAAAAATCATCAAAATCA
Found at i:1161652 original size:3 final size:3
Alignment explanation
Indices: 1161644--1161678 Score: 61
Period size: 3 Copynumber: 11.7 Consensus size: 3
1161634 CGAGTCAACT
*
1161644 TCA TCA TCA TCA TCA TCA TCA TCT TCA TCA TCA TC
1 TCA TCA TCA TCA TCA TCA TCA TCA TCA TCA TCA TC
1161679 TTTGATGGTT
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
3 30 1.00
ACGTcount: A:0.29, C:0.34, G:0.00, T:0.37
Consensus pattern (3 bp):
TCA
Found at i:1161679 original size:12 final size:12
Alignment explanation
Indices: 1161642--1161680 Score: 69
Period size: 12 Copynumber: 3.2 Consensus size: 12
1161632 TCCGAGTCAA
1161642 CTTCATCATCAT
1 CTTCATCATCAT
*
1161654 CATCATCATCAT
1 CTTCATCATCAT
1161666 CTTCATCATCAT
1 CTTCATCATCAT
1161678 CTT
1 CTT
1161681 TGATGGTTTA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
12 25 1.00
ACGTcount: A:0.26, C:0.33, G:0.00, T:0.41
Consensus pattern (12 bp):
CTTCATCATCAT
Found at i:1163268 original size:20 final size:20
Alignment explanation
Indices: 1163226--1163276 Score: 66
Period size: 20 Copynumber: 2.5 Consensus size: 20
1163216 GTTGGGTTCA
* *
1163226 ATGTATCGATACATTTCACC
1 ATGTATCGATACAATCCACC
**
1163246 ATGTATCGATACAATCCTTC
1 ATGTATCGATACAATCCACC
1163266 ATGTATCGATA
1 ATGTATCGATA
1163277 TAATGTATTG
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
20 27 1.00
ACGTcount: A:0.31, C:0.22, G:0.12, T:0.35
Consensus pattern (20 bp):
ATGTATCGATACAATCCACC
Found at i:1168653 original size:21 final size:21
Alignment explanation
Indices: 1168596--1168653 Score: 68
Period size: 20 Copynumber: 2.9 Consensus size: 21
1168586 AAAAACTCAG
*
1168596 AATGTATCGATACAA--AGCA
1 AATGTATCGATACAATTTGCA
*
1168615 AATAGTATCGATAC-ATTTGGA
1 AAT-GTATCGATACAATTTGCA
1168636 AATGTATCGATACAATTT
1 AATGTATCGATACAATTT
1168654 TTTGACCAAA
Statistics
Matches: 33, Mismatches: 2, Indels: 6
0.80 0.05 0.15
Matches are distributed among these distances:
19 4 0.12
20 20 0.61
21 9 0.27
ACGTcount: A:0.41, C:0.12, G:0.16, T:0.31
Consensus pattern (21 bp):
AATGTATCGATACAATTTGCA
Found at i:1174021 original size:21 final size:20
Alignment explanation
Indices: 1173975--1174021 Score: 51
Period size: 21 Copynumber: 2.2 Consensus size: 20
1173965 GTTCTATCAA
*
1173975 TTATTAATTTAATTTAATTT
1 TTATTAATTTAATCTAATTT
1173995 TATATTAAATTT-ATCTAATTAT
1 T-TATT-AATTTAATCTAATT-T
1174017 TTATT
1 TTATT
1174022 GAGTGTTGAT
Statistics
Matches: 23, Mismatches: 1, Indels: 5
0.79 0.03 0.17
Matches are distributed among these distances:
20 1 0.04
21 15 0.65
22 7 0.30
ACGTcount: A:0.36, C:0.02, G:0.00, T:0.62
Consensus pattern (20 bp):
TTATTAATTTAATCTAATTT
Found at i:1176294 original size:34 final size:34
Alignment explanation
Indices: 1176250--1176356 Score: 178
Period size: 34 Copynumber: 3.1 Consensus size: 34
1176240 TTGCAATCTC
* * *
1176250 AATTATGATGATGAAGATGATCATGAAACCATTG
1 AATTGTGATGATGAGGATGATAATGAAACCATTG
1176284 AATTGTGATGATGAGGATGATAATGAAACCATTG
1 AATTGTGATGATGAGGATGATAATGAAACCATTG
*
1176318 AATTGTGATGATGAGGATGATGATGAAACCATTG
1 AATTGTGATGATGAGGATGATAATGAAACCATTG
1176352 AATTG
1 AATTG
1176357 ATTTAAAATT
Statistics
Matches: 69, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
34 69 1.00
ACGTcount: A:0.38, C:0.07, G:0.25, T:0.30
Consensus pattern (34 bp):
AATTGTGATGATGAGGATGATAATGAAACCATTG
Found at i:1177497 original size:71 final size:69
Alignment explanation
Indices: 1177339--1177528 Score: 224
Period size: 71 Copynumber: 2.7 Consensus size: 69
1177329 TTTGAGTTCT
* * *
1177339 ATAATCAAATTAAAAATAAATCCTAAATTTGTATAAATAAAAATAAATTACACCCTCAAAAATTT
1 ATAATCAAATTAAAAATAAAT-TTAAATTTCTACAAAT-AAAATAAATTACACCCTCAAAAATTT
1177404 AAACTC
64 AAACTC
**
1177410 AT-ATCATACCTAAAAA-ACACATTTAAATTTCTACAAATCAAAATAAATTACACCCT-AAAAAT
1 ATAATCA-AATTAAAAATA-A-ATTTAAATTTCTACAAAT-AAAATAAATTACACCCTCAAAAAT
1177472 TTAAACTCGC
62 TTAAACT--C
*
1177482 ATAATCAAATTAAAAATAAATTTAAACTTCTACAAATAGAAATAAAT
1 ATAATCAAATTAAAAATAAATTTAAATTTCTACAAATA-AAATAAAT
1177529 AATACCTTTA
Statistics
Matches: 102, Mismatches: 9, Indels: 16
0.80 0.07 0.13
Matches are distributed among these distances:
70 19 0.19
71 65 0.64
72 13 0.13
73 5 0.05
ACGTcount: A:0.54, C:0.15, G:0.02, T:0.29
Consensus pattern (69 bp):
ATAATCAAATTAAAAATAAATTTAAATTTCTACAAATAAAATAAATTACACCCTCAAAAATTTAA
ACTC
Found at i:1177989 original size:22 final size:21
Alignment explanation
Indices: 1177950--1177996 Score: 58
Period size: 22 Copynumber: 2.2 Consensus size: 21
1177940 TTTATAAGTA
*
1177950 TAAATTTTTTTCAAATTTAAT
1 TAAATTTATTTCAAATTTAAT
* *
1177971 TAAATATTATTTCATATTTTAT
1 TAAAT-TTATTTCAAATTTAAT
1177993 TAAA
1 TAAA
1177997 AAATAATAAT
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
21 5 0.23
22 17 0.77
ACGTcount: A:0.40, C:0.04, G:0.00, T:0.55
Consensus pattern (21 bp):
TAAATTTATTTCAAATTTAAT
Found at i:1178052 original size:8 final size:8
Alignment explanation
Indices: 1178027--1178071 Score: 63
Period size: 8 Copynumber: 5.4 Consensus size: 8
1178017 TTTCAACATG
1178027 AATTTTTT
1 AATTTTTT
1178035 AATTTATTT
1 AATTT-TTT
1178044 AATTTTTT
1 AATTTTTT
*
1178052 AATTTAATT
1 AATTT-TTT
1178061 AATTTTTT
1 AATTTTTT
1178069 AAT
1 AAT
1178072 AAATAATACG
Statistics
Matches: 33, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
8 18 0.55
9 15 0.45
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (8 bp):
AATTTTTT
Found at i:1178067 original size:18 final size:17
Alignment explanation
Indices: 1178027--1178071 Score: 81
Period size: 17 Copynumber: 2.6 Consensus size: 17
1178017 TTTCAACATG
*
1178027 AATTTTTTAATTTATTT
1 AATTTTTTAATTTAATT
1178044 AATTTTTTAATTTAATT
1 AATTTTTTAATTTAATT
1178061 AATTTTTTAAT
1 AATTTTTTAAT
1178072 AAATAATACG
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
17 27 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (17 bp):
AATTTTTTAATTTAATT
Found at i:1179669 original size:13 final size:13
Alignment explanation
Indices: 1179651--1179676 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
1179641 ACATTTTATG
1179651 ATGTATCGATACA
1 ATGTATCGATACA
1179664 ATGTATCGATACA
1 ATGTATCGATACA
1179677 TACTGGGTGT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:1179775 original size:20 final size:21
Alignment explanation
Indices: 1179728--1179778 Score: 68
Period size: 20 Copynumber: 2.5 Consensus size: 21
1179718 GCCAATGACC
**
1179728 TGTATCGATACATCTTTTTCA
1 TGTATCGATACATCTTGGTCA
*
1179749 AGTATCGATACAT-TTGGTCA
1 TGTATCGATACATCTTGGTCA
1179769 TGTATCGATA
1 TGTATCGATA
1179779 TAATGTATCG
Statistics
Matches: 26, Mismatches: 4, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
20 14 0.54
21 12 0.46
ACGTcount: A:0.27, C:0.16, G:0.16, T:0.41
Consensus pattern (21 bp):
TGTATCGATACATCTTGGTCA
Found at i:1179807 original size:20 final size:20
Alignment explanation
Indices: 1179782--1179832 Score: 57
Period size: 20 Copynumber: 2.5 Consensus size: 20
1179772 ATCGATATAA
*
1179782 TGTATCGATACAATGCAATC
1 TGTATCGATACAATGAAATC
* * * *
1179802 TGTATCAATACATTTAAATG
1 TGTATCGATACAATGAAATC
1179822 TGTATCGATAC
1 TGTATCGATAC
1179833 TTTTCAGGGT
Statistics
Matches: 25, Mismatches: 6, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
20 25 1.00
ACGTcount: A:0.35, C:0.16, G:0.14, T:0.35
Consensus pattern (20 bp):
TGTATCGATACAATGAAATC
Found at i:1182116 original size:20 final size:20
Alignment explanation
Indices: 1182087--1182127 Score: 57
Period size: 22 Copynumber: 2.0 Consensus size: 20
1182077 TGTTTTTGTT
1182087 GATGATTTTG-ATGAAAAAC
1 GATGATTTTGAATGAAAAAC
1182106 GATGTATTTTGAAATGAAAAAC
1 GATG-ATTTTG-AATGAAAAAC
1182128 AAGAATTTTG
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
19 4 0.21
20 6 0.32
22 9 0.47
ACGTcount: A:0.44, C:0.05, G:0.20, T:0.32
Consensus pattern (20 bp):
GATGATTTTGAATGAAAAAC
Found at i:1182135 original size:21 final size:22
Alignment explanation
Indices: 1182097--1182137 Score: 57
Period size: 22 Copynumber: 1.9 Consensus size: 22
1182087 GATGATTTTG
* *
1182097 ATGAAAAACGATGTATTTTGAA
1 ATGAAAAACGAAGAATTTTGAA
1182119 ATGAAAAAC-AAGAATTTTG
1 ATGAAAAACGAAGAATTTTG
1182138 CAAAAGATTT
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
21 8 0.47
22 9 0.53
ACGTcount: A:0.49, C:0.05, G:0.17, T:0.29
Consensus pattern (22 bp):
ATGAAAAACGAAGAATTTTGAA
Found at i:1182288 original size:13 final size:13
Alignment explanation
Indices: 1182258--1182296 Score: 51
Period size: 13 Copynumber: 3.0 Consensus size: 13
1182248 TATAATCCCC
*
1182258 TTGTATCGATATA
1 TTGTATCGATACA
*
1182271 CTGTATCGATACA
1 TTGTATCGATACA
*
1182284 TTGTATTGATACA
1 TTGTATCGATACA
1182297 AAGAATTCTG
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
13 22 1.00
ACGTcount: A:0.31, C:0.13, G:0.15, T:0.41
Consensus pattern (13 bp):
TTGTATCGATACA
Found at i:1182605 original size:13 final size:13
Alignment explanation
Indices: 1182587--1182612 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
1182577 TCATTTTTTT
1182587 GGTCATTAATCAA
1 GGTCATTAATCAA
1182600 GGTCATTAATCAA
1 GGTCATTAATCAA
1182613 AAGTGTACTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
GGTCATTAATCAA
Found at i:1184622 original size:29 final size:29
Alignment explanation
Indices: 1184580--1184637 Score: 116
Period size: 29 Copynumber: 2.0 Consensus size: 29
1184570 GGAAGTGTTA
1184580 GAATCATCAAAAATAACATGGATTAATTC
1 GAATCATCAAAAATAACATGGATTAATTC
1184609 GAATCATCAAAAATAACATGGATTAATTC
1 GAATCATCAAAAATAACATGGATTAATTC
1184638 TTCAACAACT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 29 1.00
ACGTcount: A:0.48, C:0.14, G:0.10, T:0.28
Consensus pattern (29 bp):
GAATCATCAAAAATAACATGGATTAATTC
Found at i:1188702 original size:20 final size:21
Alignment explanation
Indices: 1188656--1188707 Score: 70
Period size: 20 Copynumber: 2.5 Consensus size: 21
1188646 CCAATGACCC
**
1188656 GTATCGATACATCTTTTTCAA
1 GTATCGATACATCTTGGTCAA
*
1188677 GTATCGATACAT-TTGGTCAT
1 GTATCGATACATCTTGGTCAA
1188697 GTATCGATACA
1 GTATCGATACA
1188708 ATGTATGGAT
Statistics
Matches: 28, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
20 16 0.57
21 12 0.43
ACGTcount: A:0.29, C:0.17, G:0.15, T:0.38
Consensus pattern (21 bp):
GTATCGATACATCTTGGTCAA
Found at i:1188738 original size:20 final size:20
Alignment explanation
Indices: 1188709--1188759 Score: 57
Period size: 20 Copynumber: 2.5 Consensus size: 20
1188699 ATCGATACAA
* *
1188709 TGTATGGATACAATGCAATC
1 TGTATCGATACAATGAAATC
* * *
1188729 TGTATCGATACATTTAAATG
1 TGTATCGATACAATGAAATC
1188749 TGTATCGATAC
1 TGTATCGATAC
1188760 TTTTCAGGGT
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
20 26 1.00
ACGTcount: A:0.33, C:0.14, G:0.18, T:0.35
Consensus pattern (20 bp):
TGTATCGATACAATGAAATC
Found at i:1199586 original size:51 final size:51
Alignment explanation
Indices: 1199496--1199605 Score: 114
Period size: 51 Copynumber: 2.2 Consensus size: 51
1199486 GAATGTATCA
** **
1199496 ATACATTTAGGTCAAAACTCATAAGATATCAATGTAATGACGAATGCATTG
1 ATACATTTAGGTCAAAACTCATAAGATATCAATACAATGAAAAATGCATTG
* * * * *
1199547 ATACATTTAGGTTAAAACTCA-GAGTGTATCGATACAATGAAAAATGTATTG
1 ATACATTTAGGTCAAAACTCATAAG-ATATCAATACAATGAAAAATGCATTG
*
1199598 AAACATTT
1 ATACATTT
1199606 TCATTCTAGA
Statistics
Matches: 48, Mismatches: 10, Indels: 2
0.80 0.17 0.03
Matches are distributed among these distances:
50 2 0.04
51 46 0.96
ACGTcount: A:0.42, C:0.12, G:0.15, T:0.31
Consensus pattern (51 bp):
ATACATTTAGGTCAAAACTCATAAGATATCAATACAATGAAAAATGCATTG
Found at i:1200088 original size:23 final size:23
Alignment explanation
Indices: 1200062--1200119 Score: 107
Period size: 23 Copynumber: 2.5 Consensus size: 23
1200052 TATCTAAAAG
1200062 TTTTAAACTTTTTAACCAAAACA
1 TTTTAAACTTTTTAACCAAAACA
*
1200085 TTTTAAACTTTTTAACCAAGACA
1 TTTTAAACTTTTTAACCAAAACA
1200108 TTTTAAACTTTT
1 TTTTAAACTTTT
1200120 GAAGTGCAAA
Statistics
Matches: 34, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
23 34 1.00
ACGTcount: A:0.38, C:0.16, G:0.02, T:0.45
Consensus pattern (23 bp):
TTTTAAACTTTTTAACCAAAACA
Found at i:1201066 original size:19 final size:19
Alignment explanation
Indices: 1201042--1201107 Score: 90
Period size: 19 Copynumber: 3.8 Consensus size: 19
1201032 TGTCAACGAT
1201042 TTGTATCGATACATAAGTG
1 TTGTATCGATACATAAGTG
1201061 TTGTATCGATAC--AA---
1 TTGTATCGATACATAAGTG
1201075 -TGTATCGATACATAAGTG
1 TTGTATCGATACATAAGTG
1201093 TTGTATCGATACATA
1 TTGTATCGATACATA
1201108 TGAAGCTACT
Statistics
Matches: 41, Mismatches: 0, Indels: 12
0.77 0.00 0.23
Matches are distributed among these distances:
13 11 0.27
15 2 0.05
17 2 0.05
19 26 0.63
ACGTcount: A:0.33, C:0.12, G:0.18, T:0.36
Consensus pattern (19 bp):
TTGTATCGATACATAAGTG
Found at i:1201079 original size:32 final size:32
Alignment explanation
Indices: 1201043--1201105 Score: 126
Period size: 32 Copynumber: 2.0 Consensus size: 32
1201033 GTCAACGATT
1201043 TGTATCGATACATAAGTGTTGTATCGATACAA
1 TGTATCGATACATAAGTGTTGTATCGATACAA
1201075 TGTATCGATACATAAGTGTTGTATCGATACA
1 TGTATCGATACATAAGTGTTGTATCGATACA
1201106 TATGAAGCTA
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 31 1.00
ACGTcount: A:0.33, C:0.13, G:0.19, T:0.35
Consensus pattern (32 bp):
TGTATCGATACATAAGTGTTGTATCGATACAA
Found at i:1201080 original size:13 final size:13
Alignment explanation
Indices: 1201062--1201086 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
1201052 ACATAAGTGT
1201062 TGTATCGATACAA
1 TGTATCGATACAA
1201075 TGTATCGATACA
1 TGTATCGATACA
1201087 TAAGTGTTGT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:1201228 original size:52 final size:52
Alignment explanation
Indices: 1201182--1201311 Score: 215
Period size: 52 Copynumber: 2.5 Consensus size: 52
1201172 CACTAATCTT
*
1201182 TGTATCGATACATGCAGGCAATTTTGCCTAGATGTATCGATACACTATGAAA
1 TGTATCGATACATGCAGGCAATTTTGCCCAGATGTATCGATACACTATGAAA
* * *
1201234 TGTATTGATACATACAGGCAAATTTGCCCAGATGTATCGATACACTATGAAA
1 TGTATCGATACATGCAGGCAATTTTGCCCAGATGTATCGATACACTATGAAA
1201286 TGTATCGATACATGCAGGCAAATTTT
1 TGTATCGATACATGCAGGC-AATTTT
1201312 CATATTTCGG
Statistics
Matches: 70, Mismatches: 7, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
52 65 0.93
53 5 0.07
ACGTcount: A:0.34, C:0.17, G:0.18, T:0.31
Consensus pattern (52 bp):
TGTATCGATACATGCAGGCAATTTTGCCCAGATGTATCGATACACTATGAAA
Found at i:1208927 original size:13 final size:13
Alignment explanation
Indices: 1208909--1208935 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
1208899 ACATTATGCT
1208909 TTGTATCGATACA
1 TTGTATCGATACA
1208922 TTGTATCGATACA
1 TTGTATCGATACA
1208935 T
1 T
1208936 GATCATTGTA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.30, C:0.15, G:0.15, T:0.41
Consensus pattern (13 bp):
TTGTATCGATACA
Found at i:1208932 original size:33 final size:32
Alignment explanation
Indices: 1208890--1208954 Score: 94
Period size: 33 Copynumber: 2.0 Consensus size: 32
1208880 CACACCCAGA
* *
1208890 TGTATCGATACATTATGCTTTGTATCGATACAT
1 TGTATCGATACATGAT-CATTGTATCGATACAT
*
1208923 TGTATCGATACATGATCATTGTATTGATACAT
1 TGTATCGATACATGATCATTGTATCGATACAT
1208955 GGACAATTGT
Statistics
Matches: 29, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
32 14 0.48
33 15 0.52
ACGTcount: A:0.29, C:0.14, G:0.15, T:0.42
Consensus pattern (32 bp):
TGTATCGATACATGATCATTGTATCGATACAT
Found at i:1208944 original size:19 final size:18
Alignment explanation
Indices: 1208919--1208976 Score: 80
Period size: 19 Copynumber: 3.1 Consensus size: 18
1208909 TTGTATCGAT
1208919 ACATTGTATCGATACATG
1 ACATTGTATCGATACATG
*
1208937 ATCATTGTATTGATACATGG
1 A-CATTGTATCGATACAT-G
1208957 ACAATTGTATCGATACATG
1 AC-ATTGTATCGATACATG
1208976 A
1 A
1208977 AACTGGCAGT
Statistics
Matches: 35, Mismatches: 2, Indels: 5
0.83 0.05 0.12
Matches are distributed among these distances:
18 1 0.03
19 18 0.51
20 16 0.46
ACGTcount: A:0.34, C:0.14, G:0.17, T:0.34
Consensus pattern (18 bp):
ACATTGTATCGATACATG
Found at i:1208965 original size:20 final size:20
Alignment explanation
Indices: 1208920--1208975 Score: 80
Period size: 20 Copynumber: 2.9 Consensus size: 20
1208910 TGTATCGATA
1208920 CATTGTATCGATACAT-GAT
1 CATTGTATCGATACATGGAT
*
1208939 CATTGTATTGATACATGGA-
1 CATTGTATCGATACATGGAT
1208958 CAATTGTATCGATACATG
1 C-ATTGTATCGATACATG
1208976 AAACTGGCAG
Statistics
Matches: 33, Mismatches: 2, Indels: 3
0.87 0.05 0.08
Matches are distributed among these distances:
19 16 0.48
20 17 0.52
ACGTcount: A:0.32, C:0.14, G:0.18, T:0.36
Consensus pattern (20 bp):
CATTGTATCGATACATGGAT
Found at i:1209109 original size:19 final size:20
Alignment explanation
Indices: 1209085--1209122 Score: 69
Period size: 20 Copynumber: 1.9 Consensus size: 20
1209075 ATATTTTCAA
1209085 ATGAA-TGTATCGATACATT
1 ATGAATTGTATCGATACATT
1209104 ATGAATTGTATCGATACAT
1 ATGAATTGTATCGATACAT
1209123 AGCTACGGGA
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
19 5 0.28
20 13 0.72
ACGTcount: A:0.37, C:0.11, G:0.16, T:0.37
Consensus pattern (20 bp):
ATGAATTGTATCGATACATT
Found at i:1218418 original size:13 final size:13
Alignment explanation
Indices: 1218400--1218425 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
1218390 AAATTTTTGG
1218400 TGTATCGATACAT
1 TGTATCGATACAT
1218413 TGTATCGATACAT
1 TGTATCGATACAT
1218426 ACTTGGTGTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:1219103 original size:40 final size:39
Alignment explanation
Indices: 1219057--1219137 Score: 99
Period size: 39 Copynumber: 2.1 Consensus size: 39
1219047 TTTTCTTTCT
* *
1219057 CCCTTAAACAAAATAATTTTAACAAGTTCATACATTCTCC
1 CCCTT-AACAAAATAATTTTAACAAATTCACACATTCTCC
* * * *
1219097 CCCTTAATAAAGTAATTTTAGCAAATTTACACATTCTCC
1 CCCTTAACAAAATAATTTTAACAAATTCACACATTCTCC
1219136 CC
1 CC
1219138 TTTTATTAAA
Statistics
Matches: 35, Mismatches: 6, Indels: 1
0.83 0.14 0.02
Matches are distributed among these distances:
39 30 0.86
40 5 0.14
ACGTcount: A:0.37, C:0.26, G:0.04, T:0.33
Consensus pattern (39 bp):
CCCTTAACAAAATAATTTTAACAAATTCACACATTCTCC
Found at i:1220529 original size:21 final size:20
Alignment explanation
Indices: 1220500--1220542 Score: 59
Period size: 20 Copynumber: 2.1 Consensus size: 20
1220490 GGCTAGTGTG
*
1220500 GGGACTGCCCGGTTGCGACCT
1 GGGACTG-CCGGTCGCGACCT
*
1220521 GGGAGTGCCGGTCGCGACCT
1 GGGACTGCCGGTCGCGACCT
1220541 GG
1 GG
1220543 TGGTGCTGCC
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
20 14 0.70
21 6 0.30
ACGTcount: A:0.09, C:0.30, G:0.44, T:0.16
Consensus pattern (20 bp):
GGGACTGCCGGTCGCGACCT
Found at i:1221001 original size:13 final size:13
Alignment explanation
Indices: 1220983--1221021 Score: 69
Period size: 13 Copynumber: 3.0 Consensus size: 13
1220973 ATAATCCACC
*
1220983 TGTATCGATACAG
1 TGTATCGATACAA
1220996 TGTATCGATACAA
1 TGTATCGATACAA
1221009 TGTATCGATACAA
1 TGTATCGATACAA
1221022 AGAAAAATGT
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
13 25 1.00
ACGTcount: A:0.36, C:0.15, G:0.18, T:0.31
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:1227216 original size:13 final size:13
Alignment explanation
Indices: 1227198--1227223 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
1227188 AAATTTTTGG
1227198 TGTATCGATACAT
1 TGTATCGATACAT
1227211 TGTATCGATACAT
1 TGTATCGATACAT
1227224 ACTTGGTGTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:1227318 original size:20 final size:20
Alignment explanation
Indices: 1227272--1227345 Score: 78
Period size: 20 Copynumber: 3.6 Consensus size: 20
1227262 ATCCCAATGA
***
1227272 CATGTATCGATACATATTTTT
1 CATGTATCGATACAT-TGAAT
1227293 CATGTATCGATACATTGCAA-
1 CATGTATCGATACATTG-AAT
*
1227313 CATGTATCGATACTTTGAAT
1 CATGTATCGATACATTGAAT
*
1227333 CGTGTATCGATAC
1 CATGTATCGATAC
1227346 TTTTAAGGGT
Statistics
Matches: 46, Mismatches: 5, Indels: 5
0.82 0.09 0.09
Matches are distributed among these distances:
19 2 0.04
20 29 0.63
21 15 0.33
ACGTcount: A:0.30, C:0.18, G:0.15, T:0.38
Consensus pattern (20 bp):
CATGTATCGATACATTGAAT
Found at i:1227713 original size:33 final size:32
Alignment explanation
Indices: 1227671--1227735 Score: 94
Period size: 33 Copynumber: 2.0 Consensus size: 32
1227661 CACACCCAGA
* * *
1227671 TGTATCGATACATTATGCTTTGTATTGATACAT
1 TGTATCGATACATGAT-CATTGTATCGATACAT
1227704 TGTATCGATACATGATCATTGTATCGATACAT
1 TGTATCGATACATGATCATTGTATCGATACAT
1227736 GGACAATTGT
Statistics
Matches: 29, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
32 14 0.48
33 15 0.52
ACGTcount: A:0.29, C:0.14, G:0.15, T:0.42
Consensus pattern (32 bp):
TGTATCGATACATGATCATTGTATCGATACAT
Found at i:1227719 original size:20 final size:20
Alignment explanation
Indices: 1227696--1227757 Score: 92
Period size: 20 Copynumber: 3.1 Consensus size: 20
1227686 TGCTTTGTAT
1227696 TGATACATTGTATCGATACA
1 TGATACATTGTATCGATACA
1227716 TGAT-CATTGTATCGATACA
1 TGATACATTGTATCGATACA
*
1227735 TG-GACAATTGTATCGATACA
1 TGATAC-ATTGTATCGATACA
1227755 TGA
1 TGA
1227758 AACTGACAGT
Statistics
Matches: 38, Mismatches: 1, Indels: 5
0.86 0.02 0.11
Matches are distributed among these distances:
19 18 0.47
20 20 0.53
ACGTcount: A:0.34, C:0.15, G:0.18, T:0.34
Consensus pattern (20 bp):
TGATACATTGTATCGATACA
Found at i:1227828 original size:20 final size:19
Alignment explanation
Indices: 1227785--1227835 Score: 68
Period size: 19 Copynumber: 2.6 Consensus size: 19
1227775 CTACCACTGT
1227785 TTGTATCGATACATGGACA
1 TTGTATCGATACATGGACA
*
1227804 TTGTATCAATACATGATGA-A
1 TTGTATCGATACATG--GACA
1227824 TTGTATCGATAC
1 TTGTATCGATAC
1227836 GTTACTTCTA
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
19 14 0.50
20 12 0.43
21 2 0.07
ACGTcount: A:0.33, C:0.14, G:0.18, T:0.35
Consensus pattern (19 bp):
TTGTATCGATACATGGACA
Found at i:1227896 original size:19 final size:20
Alignment explanation
Indices: 1227872--1227909 Score: 69
Period size: 20 Copynumber: 1.9 Consensus size: 20
1227862 ATATTTTCAA
1227872 ATGAA-TGTATCGATACATT
1 ATGAATTGTATCGATACATT
1227891 ATGAATTGTATCGATACAT
1 ATGAATTGTATCGATACAT
1227910 AGCTACGGAA
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
19 5 0.28
20 13 0.72
ACGTcount: A:0.37, C:0.11, G:0.16, T:0.37
Consensus pattern (20 bp):
ATGAATTGTATCGATACATT
Found at i:1233816 original size:20 final size:20
Alignment explanation
Indices: 1233791--1233862 Score: 81
Period size: 20 Copynumber: 3.6 Consensus size: 20
1233781 ACTCAGAATA
1233791 TATCGATACAATGAAAAATG
1 TATCGATACAATGAAAAATG
*****
1233811 TATCGATACAATTTCTTATG
1 TATCGATACAATGAAAAATG
*
1233831 TATCGATACATTGAAAAATG
1 TATCGATACAATGAAAAATG
*
1233851 TATTGATACAAT
1 TATCGATACAAT
1233863 TTCCTTCCAA
Statistics
Matches: 39, Mismatches: 13, Indels: 0
0.75 0.25 0.00
Matches are distributed among these distances:
20 39 1.00
ACGTcount: A:0.42, C:0.11, G:0.12, T:0.35
Consensus pattern (20 bp):
TATCGATACAATGAAAAATG
Found at i:1235472 original size:20 final size:20
Alignment explanation
Indices: 1235447--1235500 Score: 67
Period size: 20 Copynumber: 2.7 Consensus size: 20
1235437 GTTTGAAGTA
1235447 ATGTATCGATACAATTCAT-C
1 ATGTATCGATACAATT-ATCC
*
1235467 ATGTATCGATAC-ATTGTGCC
1 ATGTATCGATACAATTAT-CC
1235487 ATGTATCGATACAA
1 ATGTATCGATACAA
1235501 ATAATGGTAG
Statistics
Matches: 30, Mismatches: 1, Indels: 5
0.83 0.03 0.14
Matches are distributed among these distances:
18 1 0.03
19 3 0.10
20 25 0.83
21 1 0.03
ACGTcount: A:0.33, C:0.19, G:0.15, T:0.33
Consensus pattern (20 bp):
ATGTATCGATACAATTATCC
Found at i:1235573 original size:19 final size:20
Alignment explanation
Indices: 1235529--1235582 Score: 74
Period size: 19 Copynumber: 2.8 Consensus size: 20
1235519 CTGCTAGTTT
**
1235529 CATGTATCGATACAATTGTG
1 CATGTATCGATACAATTGAA
*
1235549 CATGTATTGATACAA-TGAA
1 CATGTATCGATACAATTGAA
1235568 CATGTATCGATACAA
1 CATGTATCGATACAA
1235583 AGCATAATTT
Statistics
Matches: 30, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
19 16 0.53
20 14 0.47
ACGTcount: A:0.37, C:0.15, G:0.17, T:0.31
Consensus pattern (20 bp):
CATGTATCGATACAATTGAA
Found at i:1237247 original size:13 final size:13
Alignment explanation
Indices: 1237229--1237253 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
1237219 ATAGTAATCT
1237229 ATGTATCGATATA
1 ATGTATCGATATA
1237242 ATGTATCGATAT
1 ATGTATCGATAT
1237254 GAAGAACATT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.08, G:0.16, T:0.40
Consensus pattern (13 bp):
ATGTATCGATATA
Found at i:1242391 original size:13 final size:13
Alignment explanation
Indices: 1242375--1242399 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
1242365 CAATTTATCA
1242375 TGTATCGATACAT
1 TGTATCGATACAT
1242388 TGTATCGATACA
1 TGTATCGATACA
1242400 ATGTGCCATG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:1242392 original size:33 final size:33
Alignment explanation
Indices: 1242355--1242419 Score: 103
Period size: 33 Copynumber: 2.0 Consensus size: 33
1242345 TTTGAAGCAA
* *
1242355 TGTATCGATACAATTTATCATGTATCGATACAT
1 TGTATCGATACAATGTACCATGTATCGATACAT
*
1242388 TGTATCGATACAATGTGCCATGTATCGATACA
1 TGTATCGATACAATGTACCATGTATCGATACA
1242420 AACAATGGTA
Statistics
Matches: 29, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
33 29 1.00
ACGTcount: A:0.32, C:0.17, G:0.15, T:0.35
Consensus pattern (33 bp):
TGTATCGATACAATGTACCATGTATCGATACAT
Found at i:1244313 original size:49 final size:51
Alignment explanation
Indices: 1244235--1244355 Score: 142
Period size: 50 Copynumber: 2.4 Consensus size: 51
1244225 GAAAACGGTT
* * *
1244235 ACCTAAGTCGACAAGGGTTGA-TAAAGATGAAAC-GAATGGCTAGGATAAA
1 ACCTAAGTCGAAAAAGGTTGACTAAAGATGAAACTGAATGACTAGGATAAA
* * * *
1244284 ACCTAAGTCGAAAATGGTTGACT-AGGATGAAACTGAGTGACTAGGATGAA
1 ACCTAAGTCGAAAAAGGTTGACTAAAGATGAAACTGAATGACTAGGATAAA
1244334 ACCTAAGTC-AAGAAAGGTTGAC
1 ACCTAAGTCGAA-AAAGGTTGAC
1244356 CTGTGAGAAA
Statistics
Matches: 62, Mismatches: 7, Indels: 5
0.84 0.09 0.07
Matches are distributed among these distances:
49 30 0.48
50 32 0.52
ACGTcount: A:0.40, C:0.13, G:0.26, T:0.20
Consensus pattern (51 bp):
ACCTAAGTCGAAAAAGGTTGACTAAAGATGAAACTGAATGACTAGGATAAA
Found at i:1246465 original size:16 final size:16
Alignment explanation
Indices: 1246413--1246534 Score: 95
Period size: 16 Copynumber: 7.6 Consensus size: 16
1246403 TTTTTTAATA
1246413 TTAAATTTAAA-TATT
1 TTAAATTTAAATTATT
* **
1246428 ATAAATTTATAATTAAA
1 TTAAATTTA-AATTATT
*
1246445 CTAAATTTAAATTATT
1 TTAAATTTAAATTATT
*
1246461 TTAAATTTAAATTAAT
1 TTAAATTTAAATTATT
* *
1246477 TAAAATTTAATTTATT
1 TTAAATTTAAATTATT
* **
1246493 TTAAACTTAAACCA-T
1 TTAAATTTAAATTATT
* *
1246508 TTCAATTTCAAATTATC
1 TTAAATTT-AAATTATT
*
1246525 TGAAATTTAA
1 TTAAATTTAA
1246535 GTTTTTGATT
Statistics
Matches: 80, Mismatches: 23, Indels: 7
0.73 0.21 0.06
Matches are distributed among these distances:
15 15 0.19
16 49 0.61
17 16 0.20
ACGTcount: A:0.47, C:0.06, G:0.01, T:0.47
Consensus pattern (16 bp):
TTAAATTTAAATTATT
Found at i:1247919 original size:17 final size:17
Alignment explanation
Indices: 1247897--1247931 Score: 61
Period size: 17 Copynumber: 2.1 Consensus size: 17
1247887 TTAAATTAGC
*
1247897 GTACTGTTTTCTTCTAT
1 GTACTGTTTTCATCTAT
1247914 GTACTGTTTTCATCTAT
1 GTACTGTTTTCATCTAT
1247931 G
1 G
1247932 CTGTCAGTTT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.14, C:0.17, G:0.14, T:0.54
Consensus pattern (17 bp):
GTACTGTTTTCATCTAT
Found at i:1257733 original size:20 final size:20
Alignment explanation
Indices: 1257708--1257768 Score: 79
Period size: 20 Copynumber: 3.0 Consensus size: 20
1257698 GTAAAAAGAC
1257708 AGAATGTATCGATACATTGA
1 AGAATGTATCGATACATTGA
* *
1257728 AGAATGTATTGATACATTCA
1 AGAATGTATCGATACATTGA
*
1257748 TA-CATGTATCGATACATTGA
1 -AGAATGTATCGATACATTGA
1257768 A
1 A
1257769 AAATATATAA
Statistics
Matches: 35, Mismatches: 5, Indels: 3
0.81 0.12 0.07
Matches are distributed among these distances:
19 1 0.03
20 33 0.94
21 1 0.03
ACGTcount: A:0.39, C:0.11, G:0.16, T:0.33
Consensus pattern (20 bp):
AGAATGTATCGATACATTGA
Found at i:1259061 original size:19 final size:19
Alignment explanation
Indices: 1259036--1259094 Score: 73
Period size: 19 Copynumber: 3.1 Consensus size: 19
1259026 TTGCATCGAT
*
1259036 ACATTGTATCGATACATGT
1 ACATTGTATCGATACATGA
* *
1259055 TCATTGTATTGATACATGA
1 ACATTGTATCGATACATGA
*
1259074 ACAAATGTATCGATACATGA
1 AC-ATTGTATCGATACATGA
1259094 A
1 A
1259095 ACTGGCAGTA
Statistics
Matches: 33, Mismatches: 6, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
19 17 0.52
20 16 0.48
ACGTcount: A:0.37, C:0.14, G:0.15, T:0.34
Consensus pattern (19 bp):
ACATTGTATCGATACATGA
Found at i:1259088 original size:20 final size:19
Alignment explanation
Indices: 1259040--1259094 Score: 65
Period size: 20 Copynumber: 2.8 Consensus size: 19
1259030 ATCGATACAT
** *
1259040 TGTATCGATACATGTTCAT
1 TGTATCGATACATGAACAA
*
1259059 TGTATTGATACATGAACAAA
1 TGTATCGATACATGAAC-AA
1259079 TGTATCGATACATGAA
1 TGTATCGATACATGAA
1259095 ACTGGCAGTA
Statistics
Matches: 30, Mismatches: 5, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
19 14 0.47
20 16 0.53
ACGTcount: A:0.36, C:0.13, G:0.16, T:0.35
Consensus pattern (19 bp):
TGTATCGATACATGAACAA
Found at i:1262883 original size:13 final size:13
Alignment explanation
Indices: 1262865--1262890 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
1262855 CAATTTGGGA
1262865 TGTATCGATACAT
1 TGTATCGATACAT
1262878 TGTATCGATACAT
1 TGTATCGATACAT
1262891 CTTGTGTGTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:1263008 original size:13 final size:13
Alignment explanation
Indices: 1262990--1263014 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
1262980 ACATTTGGTC
1262990 ATGTATCGATACA
1 ATGTATCGATACA
1263003 ATGTATCGATAC
1 ATGTATCGATAC
1263015 TGTGCATTAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:1263047 original size:20 final size:19
Alignment explanation
Indices: 1263024--1263062 Score: 69
Period size: 20 Copynumber: 2.0 Consensus size: 19
1263014 CTGTGCATTA
1263024 TGTATCGATACATTTGAAGG
1 TGTATCGATACATTT-AAGG
1263044 TGTATCGATACATTTAAGG
1 TGTATCGATACATTTAAGG
1263063 GTTTTGACCT
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
19 4 0.21
20 15 0.79
ACGTcount: A:0.31, C:0.10, G:0.23, T:0.36
Consensus pattern (19 bp):
TGTATCGATACATTTAAGG
Found at i:1263508 original size:21 final size:21
Alignment explanation
Indices: 1263482--1263536 Score: 76
Period size: 20 Copynumber: 2.7 Consensus size: 21
1263472 GTTACAAGCA
*
1263482 ATGTATCGATACAATTCCATC
1 ATGTATCGATACAATTCCACC
**
1263503 ATGTATCGATAC-ATTGTACC
1 ATGTATCGATACAATTCCACC
1263523 ATGTATCGATACAA
1 ATGTATCGATACAA
1263537 ATAGTGGTAG
Statistics
Matches: 30, Mismatches: 3, Indels: 2
0.86 0.09 0.06
Matches are distributed among these distances:
20 17 0.57
21 13 0.43
ACGTcount: A:0.35, C:0.20, G:0.13, T:0.33
Consensus pattern (21 bp):
ATGTATCGATACAATTCCACC
Found at i:1263597 original size:20 final size:20
Alignment explanation
Indices: 1263563--1263620 Score: 73
Period size: 19 Copynumber: 2.9 Consensus size: 20
1263553 TACTGCCAGT
1263563 TCCATTGTATCGATACAATTG
1 TCCA-TGTATCGATACAATTG
*
1263584 TCCATGTATAGATACAA-TG
1 TCCATGTATCGATACAATTG
**
1263603 AACATGTATCGATACAAT
1 TCCATGTATCGATACAAT
1263621 GTATCGATAC
Statistics
Matches: 32, Mismatches: 4, Indels: 3
0.82 0.10 0.08
Matches are distributed among these distances:
19 16 0.50
20 12 0.38
21 4 0.12
ACGTcount: A:0.36, C:0.17, G:0.14, T:0.33
Consensus pattern (20 bp):
TCCATGTATCGATACAATTG
Found at i:1263624 original size:13 final size:13
Alignment explanation
Indices: 1263606--1263632 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
1263596 TACAATGAAC
1263606 ATGTATCGATACA
1 ATGTATCGATACA
1263619 ATGTATCGATACA
1 ATGTATCGATACA
1263632 A
1 A
1263633 AGCATAATGT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.41, C:0.15, G:0.15, T:0.30
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:1272069 original size:13 final size:13
Alignment explanation
Indices: 1272051--1272077 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
1272041 ACATTATGCT
1272051 TTGTATCGATACA
1 TTGTATCGATACA
1272064 TTGTATCGATACA
1 TTGTATCGATACA
1272077 T
1 T
1272078 GTTCATTGTA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.30, C:0.15, G:0.15, T:0.41
Consensus pattern (13 bp):
TTGTATCGATACA
Found at i:1272074 original size:33 final size:32
Alignment explanation
Indices: 1272032--1272094 Score: 92
Period size: 33 Copynumber: 1.9 Consensus size: 32
1272022 CAGACCCAGA
*
1272032 TGTATCGATACAT-TATGCTTTGTATCGATACAT
1 TGTATCGATACATGT-T-CATTGTATCGATACAT
1272065 TGTATCGATACATGTTCATTGTATCGATAC
1 TGTATCGATACATGTTCATTGTATCGATAC
1272095 GTGGACAATT
Statistics
Matches: 28, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
32 13 0.46
33 14 0.50
34 1 0.04
ACGTcount: A:0.27, C:0.16, G:0.16, T:0.41
Consensus pattern (32 bp):
TGTATCGATACATGTTCATTGTATCGATACAT
Found at i:1272107 original size:20 final size:19
Alignment explanation
Indices: 1272061--1272117 Score: 78
Period size: 19 Copynumber: 2.9 Consensus size: 19
1272051 TTGTATCGAT
*
1272061 ACATTGTATCGATACATGT
1 ACATTGTATCGATACATGG
* *
1272080 TCATTGTATCGATACGTGG
1 ACATTGTATCGATACATGG
1272099 ACAATTGTATCGATACATG
1 AC-ATTGTATCGATACATG
1272118 AAACTGGCAG
Statistics
Matches: 32, Mismatches: 5, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
19 17 0.53
20 15 0.47
ACGTcount: A:0.30, C:0.16, G:0.19, T:0.35
Consensus pattern (19 bp):
ACATTGTATCGATACATGG
Found at i:1277960 original size:21 final size:21
Alignment explanation
Indices: 1277934--1277973 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
1277924 CTCTCAGCGC
* *
1277934 ATAGATCAATGCTTTGACACA
1 ATAGATCAACGCCTTGACACA
1277955 ATAGATCAACGCCTTGACA
1 ATAGATCAACGCCTTGACA
1277974 TGATGGATGC
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.38, C:0.23, G:0.15, T:0.25
Consensus pattern (21 bp):
ATAGATCAACGCCTTGACACA
Found at i:1279180 original size:19 final size:20
Alignment explanation
Indices: 1279156--1279207 Score: 70
Period size: 19 Copynumber: 2.6 Consensus size: 20
1279146 TTGATACATT
*
1279156 GTATCGATACATGTTC-ATA
1 GTATCGATACATGTTCAAAA
**
1279175 GTATCGATACACCTTCAAAA
1 GTATCGATACATGTTCAAAA
1279195 GTATCGATACATG
1 GTATCGATACATG
1279208 AAACTGGCAG
Statistics
Matches: 27, Mismatches: 5, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
19 14 0.52
20 13 0.48
ACGTcount: A:0.35, C:0.19, G:0.15, T:0.31
Consensus pattern (20 bp):
GTATCGATACATGTTCAAAA
Found at i:1279282 original size:20 final size:21
Alignment explanation
Indices: 1279236--1279287 Score: 70
Period size: 20 Copynumber: 2.5 Consensus size: 21
1279226 ACTCACTTAG
* *
1279236 TATCGATACATACTTGAATTG
1 TATCGATACATACGTGAATTA
*
1279257 TATCGATACATA-GTGCATTA
1 TATCGATACATACGTGAATTA
1279277 TATCGATACAT
1 TATCGATACAT
1279288 TGAGCCTAAC
Statistics
Matches: 28, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
20 16 0.57
21 12 0.43
ACGTcount: A:0.35, C:0.15, G:0.13, T:0.37
Consensus pattern (21 bp):
TATCGATACATACGTGAATTA
Found at i:1283496 original size:18 final size:18
Alignment explanation
Indices: 1283473--1283511 Score: 69
Period size: 18 Copynumber: 2.2 Consensus size: 18
1283463 CTTGATCCTT
1283473 TTAGTTTCTATTCTGCCA
1 TTAGTTTCTATTCTGCCA
*
1283491 TTAGTTTCTGTTCTGCCA
1 TTAGTTTCTATTCTGCCA
1283509 TTA
1 TTA
1283512 ATATCACCTT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.15, C:0.21, G:0.13, T:0.51
Consensus pattern (18 bp):
TTAGTTTCTATTCTGCCA
Found at i:1286797 original size:33 final size:33
Alignment explanation
Indices: 1286755--1286819 Score: 94
Period size: 33 Copynumber: 2.0 Consensus size: 33
1286745 TTTGAAGTAA
* * *
1286755 TGTATCGATACAATTTATCATGTATTGATACAT
1 TGTATCGATACAATGTACCATGTATCGATACAT
*
1286788 TGTATCGATACAATGTGCCATGTATCGATACA
1 TGTATCGATACAATGTACCATGTATCGATACA
1286820 AACAATGGTA
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
33 28 1.00
ACGTcount: A:0.32, C:0.15, G:0.15, T:0.37
Consensus pattern (33 bp):
TGTATCGATACAATGTACCATGTATCGATACAT
Found at i:1287144 original size:20 final size:21
Alignment explanation
Indices: 1287106--1287145 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
1287096 TTTAAATGAA
1287106 CAAAACTTGTTTACGATTTTT
1 CAAAACTTGTTTACGATTTTT
1287127 CAAAATCTT-TTT-CGATTTT
1 CAAAA-CTTGTTTACGATTTT
1287146 ATTCAATCTT
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
20 7 0.39
21 8 0.44
22 3 0.17
ACGTcount: A:0.28, C:0.15, G:0.07, T:0.50
Consensus pattern (21 bp):
CAAAACTTGTTTACGATTTTT
Found at i:1287857 original size:33 final size:33
Alignment explanation
Indices: 1287820--1287886 Score: 82
Period size: 33 Copynumber: 2.0 Consensus size: 33
1287810 AAGTGCACTA
*
1287820 AAGTGCTT-ATCCATACGCTGCGAGAGTGAAGTG
1 AAGTG-TTCATCCATACGCTGCGAAAGTGAAGTG
* **
1287853 AAGTGTTCATTCATGTGCTGCGAAAGTGAAGTG
1 AAGTGTTCATCCATACGCTGCGAAAGTGAAGTG
1287886 A
1 A
1287887 TCAACTCTCA
Statistics
Matches: 29, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
32 2 0.07
33 27 0.93
ACGTcount: A:0.28, C:0.15, G:0.30, T:0.27
Consensus pattern (33 bp):
AAGTGTTCATCCATACGCTGCGAAAGTGAAGTG
Found at i:1296785 original size:20 final size:20
Alignment explanation
Indices: 1296762--1296836 Score: 114
Period size: 20 Copynumber: 3.8 Consensus size: 20
1296752 AACTACCCAG
1296762 ATGTATCGATACATTTTTCA
1 ATGTATCGATACATTTTTCA
* * *
1296782 ATGTATCGATACATGTATGA
1 ATGTATCGATACATTTTTCA
*
1296802 ATGTATCGATACATTCTTCA
1 ATGTATCGATACATTTTTCA
1296822 ATGTATCGATACATT
1 ATGTATCGATACATT
1296837 CTATCTTTTT
Statistics
Matches: 48, Mismatches: 7, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
20 48 1.00
ACGTcount: A:0.32, C:0.15, G:0.13, T:0.40
Consensus pattern (20 bp):
ATGTATCGATACATTTTTCA
Found at i:1303274 original size:20 final size:19
Alignment explanation
Indices: 1303228--1303283 Score: 67
Period size: 20 Copynumber: 2.8 Consensus size: 19
1303218 AAAACCCTTA
**
1303228 AATGTATCGATACACAATTC
1 AATGTATCGATACA-TGTTC
*
1303248 AAAGTATCGATACATGTTGC
1 AATGTATCGATACATGTT-C
1303268 AATGTATCGATACATG
1 AATGTATCGATACATG
1303284 AAAAATATGT
Statistics
Matches: 31, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
19 2 0.06
20 29 0.94
ACGTcount: A:0.38, C:0.16, G:0.16, T:0.30
Consensus pattern (19 bp):
AATGTATCGATACATGTTC
Found at i:1312573 original size:1 final size:1
Alignment explanation
Indices: 1312567--1312641 Score: 60
Period size: 1 Copynumber: 75.0 Consensus size: 1
1312557 CTTCATACCC
* * * * * ** * * *
1312567 AAAAAAAATAAAAAAAACAAAAAAATAAAAAAAATAAAAAACAAAAAAACCAAGAAAAAATAACA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
1312632 AAAAAAAAAA
1 AAAAAAAAAA
1312642 CAGAAAGGGG
Statistics
Matches: 56, Mismatches: 18, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
1 56 1.00
ACGTcount: A:0.87, C:0.07, G:0.01, T:0.05
Consensus pattern (1 bp):
A
Found at i:1312596 original size:26 final size:27
Alignment explanation
Indices: 1312568--1312641 Score: 93
Period size: 26 Copynumber: 2.9 Consensus size: 27
1312558 TTCATACCCA
*
1312568 AAAAAAATAAAAAAAACAAAAAAA-TA
1 AAAAAAATAAAAAAAACAAAAAAACCA
1312594 AAAAAAAT--AAAAAACAAAAAAACCA
1 AAAAAAATAAAAAAAACAAAAAAACCA
*
1312619 AGAAAAAATAACAAAAA-AAAAAA
1 A-AAAAAATAAAAAAAACAAAAAA
1312642 CAGAAAGGGG
Statistics
Matches: 42, Mismatches: 2, Indels: 7
0.82 0.04 0.14
Matches are distributed among these distances:
24 14 0.33
25 2 0.05
26 15 0.36
27 6 0.14
28 5 0.12
ACGTcount: A:0.86, C:0.07, G:0.01, T:0.05
Consensus pattern (27 bp):
AAAAAAATAAAAAAAACAAAAAAACCA
Found at i:1313925 original size:28 final size:28
Alignment explanation
Indices: 1313858--1314422 Score: 598
Period size: 28 Copynumber: 19.5 Consensus size: 28
1313848 CGTTCATCTC
* *
1313858 TTCAAAGCCCACAGGTCAGTGGCA-CAT
1 TTCAAAGCCCACAAGTCAGTGGCACCCT
1313885 TTCAAAGCCCACAAGTCAGTGGCACCCT
1 TTCAAAGCCCACAAGTCAGTGGCACCCT
** *
1313913 TTCAAAGTGCACAAGTCAGTGGCACTCTT
1 TTCAAAGCCCACAAGTCAGTGGCAC-CCT
*
1313942 TTCAAAGCCCACATGAGTC-GTTGGCAACTCTT
1 TTCAAAGCCCACA--AGTCAG-TGGC-AC-CCT
1313974 TTCAAAGCCCACAAGTCAGTGGCATCCC-
1 TTCAAAGCCCACAAGTCAGTGGCA-CCCT
*
1314002 TTCAAAGCCCACAAGTTAGTGGCACCCT
1 TTCAAAGCCCACAAGTCAGTGGCACCCT
*
1314030 TTCAAAGCCCACAAGTCAGTGGCACTCTT
1 TTCAAAGCCCACAAGTCAGTGGCAC-CCT
** *
1314059 TTCAAAGCCCACACGAGTTGGTGGCCACTCTT
1 TTCAAAGCCCACA--AGTCAGTGG-CAC-CCT
*
1314091 TTCAAAGCCCACAAGTCAGTGGCATCCT
1 TTCAAAGCCCACAAGTCAGTGGCACCCT
** * *
1314119 TTCAAAGCCCATGAGTCAATGGCAACTCTT
1 TTCAAAGCCCACAAGTCAGTGGC-AC-CCT
*
1314149 TTCAAAGCCCACAAGTCAGTGGCATCCT
1 TTCAAAGCCCACAAGTCAGTGGCACCCT
* *
1314177 TTCAAAGCCCACAAGTCAATGGCACTCTT
1 TTCAAAGCCCACAAGTCAGTGGCAC-CCT
* *
1314206 TTCGAAGCCCACAAGTCAGTGGCATCCT
1 TTCAAAGCCCACAAGTCAGTGGCACCCT
1314234 TTCAAAGCCCACAAGTCAGTGGCACCCT
1 TTCAAAGCCCACAAGTCAGTGGCACCCT
* *
1314262 TTCAAAGCCCACAAGTTAGTGGCACTCTT
1 TTCAAAGCCCACAAGTCAGTGGCAC-CCT
* * *
1314291 TTCAAAGCTCACAAGTCAATGGCATCCT
1 TTCAAAGCCCACAAGTCAGTGGCACCCT
* *
1314319 TTCAAAGCCCATAAGTCAGTGGCACTCTT
1 TTCAAAGCCCACAAGTCAGTGGCAC-CCT
* *
1314348 TTCAAAGCCCACAAG-CTAGTGGTAACTCTT
1 TTCAAAGCCCACAAGTC-AGTGG-CAC-CCT
* *
1314378 TTCAAAGCCCACACGAGTCGGTGGCAACTCTT
1 TTCAAAGCCCACA--AGTCAGTGGC-AC-CCT
1314410 TTCAAAGCCCACA
1 TTCAAAGCCCACA
1314423 CAAGTTAGTG
Statistics
Matches: 462, Mismatches: 52, Indels: 43
0.83 0.09 0.08
Matches are distributed among these distances:
27 26 0.06
28 195 0.42
29 102 0.22
30 58 0.13
31 16 0.03
32 64 0.14
33 1 0.00
ACGTcount: A:0.28, C:0.31, G:0.18, T:0.23
Consensus pattern (28 bp):
TTCAAAGCCCACAAGTCAGTGGCACCCT
Found at i:1314063 original size:117 final size:114
Alignment explanation
Indices: 1313858--1314422 Score: 742
Period size: 117 Copynumber: 4.9 Consensus size: 114
1313848 CGTTCATCTC
* * **
1313858 TTCAAAGCCCACAGGTCAGTGGCA-CATTTCAAAGCCCACAAGTCAGTGGCACCCTTTCAAAGTG
1 TTCAAAGCCCACAAGTCAGTGGCATCCTTTCAAAGCCCACAAGTCAGTGGCACCCTTTCAAAGCC
**
1313922 CACAAGTCAGTGGCACTCTTTTCAAAGCCCACATGAGTCGTTGGCAACTCTT
66 CACAAGTCAGTGGCACTCTTTTCAAAGCCCACA--AGTCAATGGC-ACTCTT
* *
1313974 TTCAAAGCCCACAAGTCAGTGGCATCCCTTCAAAGCCCACAAGTTAGTGGCACCCTTTCAAAGCC
1 TTCAAAGCCCACAAGTCAGTGGCATCCTTTCAAAGCCCACAAGTCAGTGGCACCCTTTCAAAGCC
***
1314039 CACAAGTCAGTGGCACTCTTTTCAAAGCCCACACGAGTTGGTGGCCACTCTT
66 CACAAGTCAGTGGCACTCTTTTCAAAGCCCACA--AGTCAATGG-CACTCTT
** * *
1314091 TTCAAAGCCCACAAGTCAGTGGCATCCTTTCAAAGCCCATGAGTCAATGGCAACTCTTTTCAAAG
1 TTCAAAGCCCACAAGTCAGTGGCATCCTTTCAAAGCCCACAAGTCAGTGGC-AC-CCTTTCAAAG
*
1314156 CCCACAAGTCAGTGGCA-TCCTTTCAAAGCCCACAAGTCAATGGCACTCTT
64 CCCACAAGTCAGTGGCACTCTTTTCAAAGCCCACAAGTCAATGGCACTCTT
*
1314206 TTCGAAGCCCACAAGTCAGTGGCATCCTTTCAAAGCCCACAAGTCAGTGGCACCCTTTCAAAGCC
1 TTCAAAGCCCACAAGTCAGTGGCATCCTTTCAAAGCCCACAAGTCAGTGGCACCCTTTCAAAGCC
* * *
1314271 CACAAGTTAGTGGCACTCTTTTCAAAGCTCACAAGTCAATGGCA-TCCT
66 CACAAGTCAGTGGCACTCTTTTCAAAGCCCACAAGTCAATGGCACTCTT
* * * *
1314319 TTCAAAGCCCATAAGTCAGTGGCACTCTTTTCAAAGCCCACAAG-CTAGTGGTAACTCTTTTCAA
1 TTCAAAGCCCACAAGTCAGTGGCA-TCCTTTCAAAGCCCACAAGTC-AGTGG-CAC-CCTTTCAA
*
1314383 AGCCCACACGAGTCGGTGGCAACTCTTTTCAAAGCCCACA
62 AGCCCACA--AGTCAGTGGC-ACTCTTTTCAAAGCCCACA
1314423 CAAGTTAGTG
Statistics
Matches: 401, Mismatches: 36, Indels: 21
0.88 0.08 0.05
Matches are distributed among these distances:
113 51 0.13
114 51 0.13
115 56 0.14
116 44 0.11
117 128 0.32
118 27 0.07
119 44 0.11
ACGTcount: A:0.28, C:0.31, G:0.18, T:0.23
Consensus pattern (114 bp):
TTCAAAGCCCACAAGTCAGTGGCATCCTTTCAAAGCCCACAAGTCAGTGGCACCCTTTCAAAGCC
CACAAGTCAGTGGCACTCTTTTCAAAGCCCACAAGTCAATGGCACTCTT
Found at i:1314231 original size:57 final size:58
Alignment explanation
Indices: 1313858--1314422 Score: 686
Period size: 57 Copynumber: 9.7 Consensus size: 58
1313848 CGTTCATCTC
* * *
1313858 TTCAAAGCCCACAGGTCAGTGGCA--CATTTCAAAGCCCACAAGTCAGTGGCAC-CCT
1 TTCAAAGCCCACAAGTCAGTGGCACTCTTTTCAAAGCCCACAAGTCAGTGGCACTCTT
**
1313913 TTCAAAGTGCACAAGTCAGTGGCACTCTTTTCAAAGCCCACATGAGTC-GTTGGCAACTCTT
1 TTCAAAGCCCACAAGTCAGTGGCACTCTTTTCAAAGCCCACA--AGTCAG-TGGC-ACTCTT
** * *
1313974 TTCAAAGCCCACAAGTCAGTGGCA-TCCCTTCAAAGCCCACAAGTTAGTGGCAC-CCT
1 TTCAAAGCCCACAAGTCAGTGGCACTCTTTTCAAAGCCCACAAGTCAGTGGCACTCTT
**
1314030 TTCAAAGCCCACAAGTCAGTGGCACTCTTTTCAAAGCCCACACGAGTTGGTGGCCACTCTT
1 TTCAAAGCCCACAAGTCAGTGGCACTCTTTTCAAAGCCCACA--AGTCAGTGG-CACTCTT
* ** *
1314091 TTCAAAGCCCACAAGTCAGTGGCA-TCCTTTCAAAGCCCATGAGTCAATGGCAACTCTT
1 TTCAAAGCCCACAAGTCAGTGGCACTCTTTTCAAAGCCCACAAGTCAGTGGC-ACTCTT
* *
1314149 TTCAAAGCCCACAAGTCAGTGGCA-TCCTTTCAAAGCCCACAAGTCAATGGCACTCTT
1 TTCAAAGCCCACAAGTCAGTGGCACTCTTTTCAAAGCCCACAAGTCAGTGGCACTCTT
* * *
1314206 TTCGAAGCCCACAAGTCAGTGGCA-TCCTTTCAAAGCCCACAAGTCAGTGGCAC-CCT
1 TTCAAAGCCCACAAGTCAGTGGCACTCTTTTCAAAGCCCACAAGTCAGTGGCACTCTT
* * * *
1314262 TTCAAAGCCCACAAGTTAGTGGCACTCTTTTCAAAGCTCACAAGTCAATGGCA-TCCT
1 TTCAAAGCCCACAAGTCAGTGGCACTCTTTTCAAAGCCCACAAGTCAGTGGCACTCTT
* *
1314319 TTCAAAGCCCATAAGTCAGTGGCACTCTTTTCAAAGCCCACAAG-CTAGTGGTAACTCTT
1 TTCAAAGCCCACAAGTCAGTGGCACTCTTTTCAAAGCCCACAAGTC-AGTGG-CACTCTT
*
1314378 TTCAAAGCCCACACGAGTCGGTGGCAACTCTTTTCAAAGCCCACA
1 TTCAAAGCCCACA--AGTCAGTGGC-ACTCTTTTCAAAGCCCACA
1314423 CAAGTTAGTG
Statistics
Matches: 449, Mismatches: 39, Indels: 37
0.86 0.07 0.07
Matches are distributed among these distances:
55 21 0.05
56 51 0.11
57 163 0.36
58 70 0.16
59 32 0.07
60 34 0.08
61 59 0.13
62 19 0.04
ACGTcount: A:0.28, C:0.31, G:0.18, T:0.23
Consensus pattern (58 bp):
TTCAAAGCCCACAAGTCAGTGGCACTCTTTTCAAAGCCCACAAGTCAGTGGCACTCTT
Found at i:1314563 original size:45 final size:46
Alignment explanation
Indices: 1314499--1314621 Score: 131
Period size: 49 Copynumber: 2.6 Consensus size: 46
1314489 CTGTCTGACA
* * * *
1314499 TCGCTAGCATTGAATCAGCATATTGGCACCTTT-ATTAGCCCAATG
1 TCGCTGGCCTTGAATCAGCACATTGGCACCTTTCATTAGCACAATG
* *
1314544 TCGCTGGCCTTGAATCAGCACATTGGTCCACTTTTCCCTTAGCACAATG
1 TCGCTGGCCTTGAATCAGCACATTGG--CACCTTT-CATTAGCACAATG
* **
1314593 TCGTTGGCCTTGAATTGGCACATTGGCAC
1 TCGCTGGCCTTGAATCAGCACATTGGCAC
1314622 TCCTCTCATC
Statistics
Matches: 65, Mismatches: 9, Indels: 6
0.81 0.11 0.08
Matches are distributed among these distances:
45 23 0.35
47 9 0.14
49 33 0.51
ACGTcount: A:0.22, C:0.27, G:0.20, T:0.31
Consensus pattern (46 bp):
TCGCTGGCCTTGAATCAGCACATTGGCACCTTTCATTAGCACAATG
Found at i:1314899 original size:62 final size:62
Alignment explanation
Indices: 1314814--1316617 Score: 1720
Period size: 62 Copynumber: 29.3 Consensus size: 62
1314804 AAGAGGGGCA
* * * * * *
1314814 GCCTCTTTCCTTTCAAAGCCCACACGAGTTGCTGGCAGCCTTTAGTCCTTAAAAAGCAGGAT
1 GCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGAC
* * * * * * *
1314876 GCCTTTTTCGTTTCAAAACCCACACGGGTTGGTGGC-CTCAATTT-GTCCTCTAAGAGTACGAC
1 GCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCAC-C-CTTTAGTCCTCAAAGAGCAGGAC
* * * * * * *
1314938 ACC-TTTTCTTTTAAAAGCCCACAC-ATGTTGGTGGCACCCTGTAGTCCTCAATGAGTAAGAC
1 GCCTTTTTCCTTTCAAAGCCCACACGA-GTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGAC
* * * * *
1314999 ACCTTTTTCCTTTCAAAGCCCACACGAGTTTGTGGCACCCTTTAGTTCTCAAAGAGTAGGAT
1 GCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGAC
** * *
1315061 GCCGCTTTCCTTTCAAAGCCCACGCGAGTTGGTGGCACCCTTCAGTCCTCAAAGAGCAGGAC
1 GCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGAC
** * * *
1315123 GCCTTTTTCCTTTCAAAGCCCACAAAAGTTGGTGGCACCCTTTAGTTCTCAAACAGCAGGAT
1 GCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGAC
* * * *
1315185 GCCTTTTTCCTTTCAAAGCCCGCA-TAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAAGAT
1 GCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGAC
* * * ** *
1315246 GCCTTTTTCCTTTCAAAACCCACATGAGTTGGTGGCACCCATTAGTCCTTGAAGAGGAGGAC
1 GCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGAC
* * * * *
1315308 ACCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCTCCCTTTAGTCTTCCATA-AGCAGGAT
1 GCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGTCCT-CAAAGAGCAGGAC
* * * * * ** *
1315370 GCCTTTTTCTTTTCAAAGCCCACTCGAGTTGGTGGCAGCCTTTAATCCTTAAAGAAAAGGAT
1 GCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGAC
* * * * *
1315432 GCCTTTTCTCCTTTCAAAACCCACACGAGTTGGTGGTAGCCTTTAGTCCTCAAAGAGCAAGAT
1 GCCTTTT-TCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGAC
* * * * * *
1315495 GCCTTTTTCCTTTTAAAGCCCACACGGGTCGGTGGCTCCCTTTAGCCCTCAAAAAGCAGGAC
1 GCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGAC
* * * *
1315557 ACCTTTTTCCTTTCAAAGCCCACACGAGTTGGT--CACTTCTTTTAG-CACTCAAAAAGTAGGAC
1 GCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCAC--CCTTTAGTC-CTCAAAGAGCAGGAC
** * * * *
1315619 AACTTTTTCC-TTCAAAGCCCACATGAGTTGGTGGCTCCCTTTAG---ACAAAGAGTAGGAC
1 GCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGAC
* * * ** ** * * *
1315677 -ACTTTTTTCTTTCAAAGCCCAAACGAGTTCATGGCATTCTTTTGTCCTAAAAGAGCCGGAC
1 GCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGAC
* * * ** * *
1315738 ACTTTTTTCTTTTTGAAGCTCACAC-AGGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGAT
1 GCCTTTTTCCTTTCAAAGCCCACACGA-GTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGAC
* ** * * * *
1315800 GCCTTTTTCCTTTCAAAGCCCATACGAGTTTATGGCACCCTTTAGTTCTCAAAAAGCACGAT
1 GCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGAC
* * * * * * *
1315862 GCCTTTTTCCTTTCAAAGCCCACATGAGTTGGTCGCTCCTTTTAG-CACTCAAAAAGTAGGAT
1 GCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGTC-CTCAAAGAGCAGGAC
** * * * *
1315924 AAC-TTTTCCGTTCAAAGCCCACACGAGTTGGTGGCTCCCTTTAG---TCAAAAAGTAGGAC
1 GCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGAC
* * * ** ** * *
1315982 -ACTTTTTTCTTTCAAAGCCCAAACGAGTTCATGGCATTCTTTTGTCCTAAAAGAGCAGGAC
1 GCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGAC
* * * ** * * * *
1316043 ACTTTTTTCTTTTTGAAGCTCACAC-AGGTTAGTGGCACCCATTAGTCCTCAAAGAGCAGGAT
1 GCCTTTTTCCTTTCAAAGCCCACACGA-GTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGAC
* * * * *
1316105 GCCTTTTTCTTTTCAAATCCCACGCGAGTTGGTGGCACCCTTCAGTCCTCAAAGAGCAAGAC
1 GCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGAC
* * *
1316167 GCCTTTTTCCTTTCATAGTCCACACGAGTTGGTGGCACCCTTTAGTCCTCAATGAGCAGGAC
1 GCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGAC
* * * *
1316229 GCCTTTTTCCTTTCAAAGCCCACACG-GTTGGTGGCACACTTTAGTCCTTAAAGAGTAAGG-T
1 GCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGTCCTCAAAGAG-CAGGAC
* * *
1316290 GCCATTTTCCTTTCAAAGTCCACACG-GCTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGAC
1 GCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGAC
* * * *
1316351 ACTTTTTTCCTTTCAAAG-CCACCACGAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAAGAT
1 GCCTTTTTCCTTTCAAAGCCCA-CACGAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGAC
* *
1316413 GCCTTTTTCCTTTCAAAGCCCACACG-GTTGGTGGCACTCTTTAGTCCTTAAAGAGCAAGG-C
1 GCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGTCCTCAAAGAGC-AGGAC
* * * * * * * * *
1316474 GTCATTTTCCTTTCAAAGACCACACGAGGTGGTGGCACTCTATAGTCCTGAAAGAGTATGAC
1 GCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGAC
* * * * * * * *
1316536 ACCTCTTTCCCTTCAAAGCCCACGCGGGTTGGTGGTACCTTTTAGTCCGCAAAGAGCAGGAC
1 GCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGAC
** *
1316598 ATCTTTTTCTTTTCAAAGCC
1 GCCTTTTTCCTTTCAAAGCC
1316618 TAGTCAGTCC
Statistics
Matches: 1424, Mismatches: 279, Indels: 78
0.80 0.16 0.04
Matches are distributed among these distances:
57 10 0.01
58 83 0.06
60 10 0.01
61 339 0.24
62 917 0.64
63 65 0.05
ACGTcount: A:0.24, C:0.27, G:0.19, T:0.30
Consensus pattern (62 bp):
GCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGAC
Found at i:1316720 original size:62 final size:62
Alignment explanation
Indices: 1316623--1333273 Score: 15312
Period size: 62 Copynumber: 269.1 Consensus size: 62
1316613 AAGCCTAGTC
* * * * *
1316623 AGTCCTCAAAGAGCAGGATGCTTTTTTCCTTTCAAAGCCCACATGAGTTGCTGGCAGCCTTT
1 AGTCCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTT
* * * * * *
1316685 AGTCCTCAAATAGCAGGATGCCTTTTTCGTTTCAAAACCCACACGGGTTGGTGGC-CTCAATTT
1 AGTCCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCAC-C-CTTT
* * * * * * * * *
1316748 -GTCCTCCAACAGTAAGACACCTTTTT-CTTTTAGAAGCCCACACGGGTTGGTGGTACCCTGT
1 AGTCCTCAAAGAGCAGGACGCCTTTTTCCTTTCA-AAGCCCACACGAGTTGGTGGCACCCTTT
* * * * * *
1316809 AGTCCTCAATGAGTAGGACACCTTTTCCCTTTCAAAGCCCACAGGAGTTTGTGGCACCCTTT
1 AGTCCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTT
* * * ** ** *
1316871 AGTTCTCAAAAAGCAGGATGCCGCTTTCCTTTCAAAGCCCACGTGAGTTGGTGGCACCCTTC
1 AGTCCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTT
*
1316933 AGTCCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGTCCACACGAGTTGGTGGCACCCTTT
1 AGTCCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTT
* ** *
1316995 AGTCCTCAAAGAGCAGGCCGCCTTTTTCCTTTCAAAGCCTGCA-TAGTTGGTGGCACCCTTT
1 AGTCCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTT
* ** * * *
1317056 AGTCCTCAAAGAGTAAAACGCCTTTTTCCTTTCAAAACCCATACGAGTTGGTGGCACCCATT
1 AGTCCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTT
* * * * *
1317118 AGTCCTTAAAGAGGAGGACACCTTTTTCCTTTCAAAGCCCACACGAGTTGATGGCTCCCTTT
1 AGTCCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTT
* * * * * * *
1317180 AGTCTTCTATGTGCAGGACGCCTTTTTCTTTTCAAAGCCCACTCGAGTTGGTGGCAGCCTTT
1 AGTCCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTT
* ** * * *
1317242 AATCCTCAAAGAGCAGGATACCTTTTTTCCTTTCAAAACCCACACGTGTTGGTGGCAGCCTTT
1 AGTCCTCAAAGAGCAGGACGCC-TTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTT
* ** * * * * *
1317305 AGTCCTCAAAGAGCAAGTTGCCTTTTTCCTTTTAAGGCCCACACGGGTCGGTGGCTCCCTTT
1 AGTCCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTT
* ** * ** * *** * * ** * *
1317367 -TTCCTTTCAAAGCCCA-TACGAGTTTATGGCACCCTTT-AGTTCTCA-AAGAGCACGATGCCTT
1 AGTCC--TCAAAGAGCAGGACGCCTTT-T----TCCTTTCAAAGCCCACACGAG-TTGGTGGC--
**
1317428 TTTCCTTT
56 -ACCCTTT
* ** * ** * * *
1317436 CAAAG-CCT-ACACGAGTTGGTGGCAGCCTTCAGTCCTTTCAAAGCCCACACCAGTTGGTCGCTC
1 ---AGTCCTCA-AAGAG-CAG-GAC-GCCTT-TTTCCTTTCAAAGCCCACACGAGTTGGTGGCAC
*
1317499 CTTTT
58 CCTTT
* * ** * ** *
1317504 AG-CACTCAAAAAGTAGGACAACTTTTTCCTTTCAAAGCCCACAAGAGTTGGTGGGTCCATTT
1 AGTC-CTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTT
* * * * * * ** **
1317566 AG---TCAAAGAGTAGGAC-ACTTTTTTCTTTGAAAGCCTAAACGAGTTCATGGCATTCTTT
1 AGTCCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTT
* * * * * ** *
1317624 TGTCCTAAAAGAGCAGGACACTTTTTTCTTTTTGAAGCTCACAC-AGGTTGGTGGCACCCTTT
1 AGTCCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGA-GTTGGTGGCACCCTTT
* * * * *
1317686 AGTCCTCAAAAAGCATGATGCCTTTTTCCTTTCAAAGCCCATACGAGTTTGTGGCACCCTTT
1 AGTCCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTT
* * * * * * * *
1317748 AGTTCTCAAAGAGCATGATGCCTTTTTCCTTTCAAAGCCAACATGAGTTGGTCGCTCCTTTT
1 AGTCCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTT
* * *** * *
1317810 AG-CACTCAAAAAGTAGGATAACTTTTTCCTTTCAAAGCCCACGCGAGTTGGTGGCTCCCTTT
1 AGTC-CTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTT
* * * * *** **
1317872 AG---TCAAAGAGTAGGAC-ACTTTTTTCTTTCAAAGCCCAAACGAGTTCACGGCATTCTTT
1 AGTCCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTT
* * * * * ** * * *
1317930 TGTCCTAAAAGAGCAGGACACTTTTTTCTTTTTGAAGCTCACAC-AGGTTAGTGGCACCCATT
1 AGTCCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGA-GTTGGTGGCACCCTTT
* * * * *
1317992 AGTCCTCAAAGAGCAGGATGCCTTTTTCTTTTCAAAACCCACGCGAGTTGGTGGCACCCTTC
1 AGTCCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTT
* * * *
1318054 AGTCCTCAAAGAGCAAGACGCCGTTTTCCTTTCATAGTCCACACGAGTTGGTGGCACCCTTT
1 AGTCCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTT
* *
1318116 AGTCCTCAATGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACG-GTTGGTGGCACACTTT
1 AGTCCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTT
* * * * *
1318177 AGTCCTTAAAGAGTAAGG-TGCCATTTTCCTTTCAAAGCTCACACGAGTTGGTGGCACCCTTT
1 AGTCCTCAAAGAG-CAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTT
** * **** * * * *
1318239 AGTCCTGGAAGAGGAGGATATTTTTTTCCTTTCAAAGCCGATACGAGTTTGTCGCACCCTTT
1 AGTCCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTT
* * * *
1318301 AGTCTTCAAAGAGCAGGATGCCTTTTTCTTTTCAAAGCCCACACGTGTTGGTGGCACCCTTT
1 AGTCCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTT
* * **
1318363 AGTCCTCAAAGAGCAGGGCACCTTTTTCCTTTCAAAGCCCACACGAGTTTATGGCACCCTTT
1 AGTCCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTT
* * * * * * *
1318425 AGTTCTCAAAGAGCATGATGCCCTTTTCCTTTTAAAGCCCACGCGACTTGGTGGCA-CCTTT
1 AGTCCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTT
*
1318486 CAGTCCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGTCCACACGAGTTGGTGGCACCCTTT
1 -AGTCCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTT
* ** * * * *
1318549 AGTCCTTAAAGAGCAACATGCCTTGTTCCTTTCAAAGCCCACACAAGTTGGTGGCACCTTTT
1 AGTCCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTT
** * * *
1318611 AGTCCTGGAAGAGGAGGACACCTTTTTCCTTTCAAAGCCCACACGAGTTTGTGGCACCCTTT
1 AGTCCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTT
* * * * * * * * * *
1318673 ACTCTTCAAAGAGCTGGACACCTTTTTCTTTTCGAAGCTCACTCGAGTTAGTGTCACCCTTT
1 AGTCCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTT
* * * * *
1318735 AGTCCTCAAAGAGCTGGATGCCTTTTTCCTTTCAAAGGCCACCCAAGTTGGTGGCACCCTTT
1 AGTCCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTT
* * * * * **
1318797 AGTCCTCAAAGAGTAGTATGCCTTTTTCTTTTCAAAGCCCACACGAGTTGGTGGTATTCTTT
1 AGTCCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTT
* * * * *
1318859 TGTCCTCAAAG-TCTAGGATGCCTTTTTCCTTTCAAAGCTCATACGAGTTGGTGGCACCCTTT
1 AGTCCTCAAAGAGC-AGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTT
* ** * * ** *
1318921 -GCTCCTCAAAGAGCCGGAAC-CCTTTTTTTTTTCAAAGCCCGCAC-ATATTGGTCACACCATTT
1 AG-TCCTCAAAGAGCAGG-ACGCCTTTTTCCTTTCAAAGCCCACACGA-GTTGGTGGCACCCTTT
* ** ** * * * *
1318983 TGTCCTCAAAGAG-ACGGTTGCCTTTTTATTTTCAAAGCACGCATGATTTGGTGGCACCCTTT
1 AGTCCTCAAAGAGCA-GGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTT
* *
1319045 AGTCCTCAAAGAGCAGGACGCCTTTTTCCATTCAAAGCCCACACGAGTTGGTGGCACCTTTT
1 AGTCCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTT
* * * * * * * *
1319107 ACTCCTC-AAGAGCCA-GAAGCCTTTTTCTTTTTAAAGCCTATATGGGTTGGTGGCACCCTTT
1 AGTCCTCAAAGAG-CAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTT
* * * * * *** * * *
1319168 TGTCCTTAAATAGTAGCAAATCTTTTTCCTTTCAATGCCCACATGAGTTGGTGGCACTCTTT
1 AGTCCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTT
* * * * * * *
1319230 AGTCCTTAAAGAGTAGGACACCTTTTTCCTTTCGAAGCCCACGCGGGTTGCTGGCACCCTTT
1 AGTCCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTT
* ** * * * * * * *
1319292 AGCCCAAAAAGAGTAGGATGCCTTTTTCTTTTCAAAGCCCAGATGGGTTGGTGGCACCCTTC
1 AGTCCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTT
* * * * *
1319354 AGTCCTCAAAGAGCAGGATGCTTTTTTCCTTTCAAAGCCTACACGAGTTGGTGGTATAGCCTTT
1 AGTCCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGG--CACCCTTT
* ** * * *
1319418 AGTACTCAAAGAGCAGGATTCCTTTTTCGTTTCAAAACCCACACGGGTTGGTGGC-CCCAATTT
1 AGTCCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCC--TTT
* * ** * * * *
1319481 -GTCCTCCAAGAGTAGGACGCCTTTTTATTTTCAAAGGCCAGATGTGTTGGTGGCACCCTTT
1 AGTCCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTT
*
1319542 AGTCCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTTGTGGCACCCTTT
1 AGTCCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTT
* ** * * *
1319604 AGTTCTCAAAGAGCATAATGCCTTTTTCCTTTCAAAGCCCACGCAAGTTGGTGGCACCCTTT
1 AGTCCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTT
* * *
1319666 AGTCCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGTCCACATGAGTTGGTGGCGCCCTTT
1 AGTCCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTT
* * *
1319728 AGTCCTCAAAGAGCAGGACGCTTTTTTCCCTTT-AAAG-CCACCACAAGTTGGTGGCAGCCTTT
1 AGTCCTCAAAGAGCAGGACGCCTTTTT-CCTTTCAAAGCCCA-CACGAGTTGGTGGCACCCTTT
* * * * ** **
1319790 AGTTCTCAAAGAGTAGGACGCCTATTTCTTTTCAAAGCCCACACGAGTTTCTGGCAATCTTT
1 AGTCCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTT
* * * * * * *
1319852 ACTTCTCAAAGAGCAGGATGCCTTTTTCGTTTCAAAACCCACACGGGTTGGTGGC-CTCATTT
1 AGTCCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCAC-CCTTT
* * * * * * *
1319914 TGTCCTTAAAGAGTAGGACACCTTTTTCTTTTCAAAGCCCACAAGTGTTGGTGGCACCCTTT
1 AGTCCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTT
* * * * * * *
1319976 AGTCCTCAATGAGCAGGACGCCCTTTTCCTTTTAAAGCTCATACGTGTTTGTGGCACCCTTT
1 AGTCCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTT
* * * * *
1320038 AATTCTCAAAGAGCAGGATGCCTTTTTCCTTTCAAAGCCCACGCGAGTTGGTGGCACCCTTC
1 AGTCCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTT
* *
1320100 AGTCCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAG-GCACACGAGTTGGTAGCACCCTTT
1 AGTCCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTT
* * * * * *
1320161 AGTCTTCGAAGAGTAGGATGCCTTTGTCCTTTCAAAGCCCACACGAGTTGGTGGCACCTTTT
1 AGTCCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTT
* * * * * * * *
1320223 AGTCCTCAAAGAGCAGGTCGTCTTTTTCCTTTTAAAGCCCACGCGAGTTCGTCGCTCTCTTT
1 AGTCCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTT
* * * * * * *
1320285 AGCCCTCATAGAGTAGGACACCTTTTTTCTTTCAAAGCCCACACGACTTGGTGGCTCCCTTT
1 AGTCCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTT
* * * * * *** **
1320347 AGTCTTCAAAGCGCAGGATG-CTTTTTTCTTTCAAAGCCCAAACGAGTTGACAGCATTCTTT
1 AGTCCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTT
* * * * * * * * *
1320408 TGTCTTGAAAGAGCAGGACACTTTTTTCTTTTTAAAGCTCACA-TAGGTTGGTGGCACCCTTT
1 AGTCCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGA-GTTGGTGGCACCCTTT
* * * ** * * **
1320470 AGTCCTCAAAGAGCAGGACGTCTTTTTCCATTCGAAGTGCAAATGAGTTGGTGGCATTCTTT
1 AGTCCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTT
* * * **
1320532 AGTTCTCAAAGAGCAGGACG-CTTTTTTCTTTCAAAGCCCAAACGAGTTGGTGGCATTCTTT
1 AGTCCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTT
* * * * *
1320593 TGTCCTCAAAGAGCAGGATGCCTTTTTCTTTTCAAAGCCCACTCGAGTTGGTGGCAGCCTTT
1 AGTCCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTT
* * * * * * *
1320655 AATCCTTAAAGAACAGGATGCCTTTTCTCCTTTCAAAACCCACACGAGTTGGTGGTAGCCTTT
1 AGTCCTCAAAGAGCAGGACGCCTTTT-TCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTT
* * * * * *
1320718 AGTCCTCAAAGAGCAAGATGCCTTTTTCCTTTTAAAGCCCACACGGGTCGGTGGCTCCCTTT
1 AGTCCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTT
* * * * *
1320780 AGCCCTCAAAAAGCAGGACACCTTTTTCCTTTCAAAGCCCACATGAGTTGGT--CACTTCTTTT
1 AGTCCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCAC--CCTTT
* * ** * *
1320842 AG-CACTCAAAAAGTAGGACAACTTTTTCCTTTCAAAGCCCACATGAGTTGGTGGCTCCCTTT
1 AGTC-CTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTT
* * * * * ** **
1320904 AG---ACAAAGAGTAGGAC-ACTTTTTTCTTTCAAAGCCCAAACGAGTTCATGGCATTCTTT
1 AGTCCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTT
* * * * * ** * * *
1320962 TGTCCTAAAAGAGCAGGACACTTTTTTCTTTTTGAAGCTCACAC-AGGTTAGTGGCACCCATT
1 AGTCCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGA-GTTGGTGGCACCCTTT
* * * *
1321024 AGTCCTCAAAGAGCAGGATGCCTTTTTCTTTTCAAATCCCACACGAGTTGGTGGCACCCTTC
1 AGTCCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTT
* * *
1321086 AGTCCTCAAAGAGCAAGACGCCTTTTTCCTTTCATAGTCCACACGAGTTGGTGGCACCCTTT
1 AGTCCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTT
* * *
1321148 AGTCCTCAATGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACG-GTTGGTGGCTCACTTT
1 AGTCCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTT
* * * * * *
1321209 AGTCCTTAAAGAGTAAGG-TGCCATTTTCCTTTCAAAGTCCACACG-GCTGGTGGCACCCTTT
1 AGTCCTCAAAGAG-CAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTT
* *
1321270 AGTCCTCAAAGAGCAGGACACTTTTTTCCTTTCAAAG-CCACCACGAGTTGGTGGCACCCTTT
1 AGTCCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCA-CACGAGTTGGTGGCACCCTTT
* * *
1321332 AGTCCTCAAAGAGCAAGATGCCTTTTTCCTTTCAAAGCCCACACGA-TTGGTGGCACTCTTT
1 AGTCCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTT
* * * * * * *
1321393 AGTCCTTAAAGAGCAAGG-CGTCATTTTCCTTTCAAAGACCACACGAGGTGGTGGCACTCTAT
1 AGTCCTCAAAGAGC-AGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTT
* * * * * * * * * *
1321455 AGTCCTGAAAGAGTATGACACCTCTTTCCCTTCAAAGCCCACGCGGGTTGGTGGTACCTTTT
1 AGTCCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTT
* ** * * * * * *
1321517 AGTCCACAAAGAGCAGGACATCTTTTTCTTTTCAAAGCCTAGATGGGTTGGTGGCACCCTTC
1 AGTCCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTT
* * * * * *
1321579 AGTCCTCAAAGAGCAGGATGCTTTTTTCCTTTCAAAGCCCACATGAGTTGCTGGTAGCCTTT
1 AGTCCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTT
* * * * * *
1321641 AGTCCTCAAATAGCAGGATGCCTTTTTCGTTTCAAAACCCACACGGGTTGGTGGC-CTCAATTT
1 AGTCCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCAC-C-CTTT
* * * * * * * *
1321704 -GTCCTCCAACAGTAGGACACCTTTTT-CTTTTAGAAGCCCACACGGGTTGGTGGTACCCTGT
1 AGTCCTCAAAGAGCAGGACGCCTTTTTCCTTTCA-AAGCCCACACGAGTTGGTGGCACCCTTT
* * * * * *
1321765 AGTCCTCAATGAGTAGGACACCTTTTCCCTTTCAAAGCCCACAGGAGTTTGTGGCACCCTTT
1 AGTCCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTT
* * * ** * ** *
1321827 AGTTCTCAAAAAGCAGGATGCCGCTTTCCTTTCAAAGCCTACGTGAGTTGGTGGCACCCTTC
1 AGTCCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTT
*
1321889 AGTCCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGTCCACACGAGTTGGTGGCACCCTTT
1 AGTCCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTT
* ** *
1321951 AGTCCTCAAAGAGCAGGCCGCCTTTTTCCTTTCAAAGCCTGCA-TAGTTGGTGGCACCCTTT
1 AGTCCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTT
** * * *
1322012 AGTCCTCAAAGAGCAAAACGCCTTTTTCCTTTCAAAACCCATACGAGTTGGTGGCACCCATT
1 AGTCCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTT
* * * * *
1322074 AGTCCTTAAAGAGGAGGACACCTTTTTCCTTTCAAAGCCCACACGAGTTGATGGCTCCCTTT
1 AGTCCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTT
* * * * * * *
1322136 AGTCTTCTATGTGCAGGACGCCTTTTTCTTTTCAAAGCCCACTCGAGTTGGTGGCAGCCTTT
1 AGTCCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTT
* ** * * *
1322198 AATCCTCAAAGAGCAGGATACCTTTTTTCCTTTCAAAACCCACACGTGTTGGTGGCAGCCTTT
1 AGTCCTCAAAGAGCAGGACGCC-TTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTT
* ** * * * * *
1322261 AGTCCTCAAAGAGCAAGTTGCCTTTTTCCTTTTAAGGCCCACACGGGTCGGTGGCTCCCTTT
1 AGTCCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTT
* ** * ** * *** * * ** * *
1322323 -TTCCTTTCAAAGCCCA-TACGAGTTTATGGCACCCTTT-AGTTCTCA-AAGAGCACGATGCCTT
1 AGTCC--TCAAAGAGCAGGACGCCTTT-T----TCCTTTCAAAGCCCACACGAG-TTGGTGGC--
**
1322384 TTTCCTTT
56 -ACCCTTT
* ** * ** * *
1322392 CAAAG-CCT-ACACGAGTTGGTGGCAGCCTTCAGTCCTTTCAAAGCCCACACGAGTTGGTCGCTC
1 ---AGTCCTCA-AAGAG-CAG-GAC-GCCTT-TTTCCTTTCAAAGCCCACACGAGTTGGTGGCAC
*
1322455 CTTTT
58 CCTTT
* * ** * ** *
1322460 AG-CACTCAAAAAGTAGGACAACTTTTTCCTTTCAAAGCCCACAAGAGTTGGTGGGTCCATTT
1 AGTC-CTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTT
* * * * * * ** **
1322522 AG---TCAAAGAGTAGGAC-ACTTTTTTCTTTGAAAGCCTAAACGAGTTCATGGCATTCTTT
1 AGTCCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTT
* * * * * ** *
1322580 TGTCCTAAAAGAGCAGGACACTTTTTTCTTTTTGAAGCTCACAC-AGGTTGGTGGCACCCTTT
1 AGTCCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGA-GTTGGTGGCACCCTTT
* * * * *
1322642 AGTCCTCAAAAAGCATGATGCCTTTTTCCTTTCAAAGCCCATACGAGTTTGTGGCACCCTTT
1 AGTCCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTT
* * * * * * * *
1322704 AGTTCTCAAAGAGCATGATGCCTTTTTCCTTTCAAAGCCAACATGAGTTGGTCGCTCCTTTT
1 AGTCCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTT
* * *** * *
1322766 AG-CACTCAAAAAGTAGGATAACTTTTTCCTTTCAAAGCCCACGCGAGTTGGTGGCTCCCTTT
1 AGTC-CTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTT
* * * * ** **
1322828 AG---TCAAAGAGTAGGAC-ACTTTTTTCTTTCAAAGCCCAAACGAGTTCATGGCATTCTTT
1 AGTCCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTT
* * * * * ** * * *
1322886 TGTCCTAAAAGAGCAGGACACTTTTTTCTTTTTGAAGCTCACAC-AGGTTAGTGGCACCCATT
1 AGTCCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGA-GTTGGTGGCACCCTTT
* * * * *
1322948 AGTCCTCAAAGAGCAGGATGCCTTTTTCTTTTCAAAACCCACGCGAGTTGGTGGCACCCTTC
1 AGTCCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTT
* * * *
1323010 AGTCCTCAAAGAGCAAGACGCCGTTTTCCTTTCATAGTCCACACGAGTTGGTGGCACCCTTT
1 AGTCCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTT
* *
1323072 AGTCCTCAATGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACG-GTTGGTGGCACACTTT
1 AGTCCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTT
* * * * *
1323133 AGTCCTTAAAGAGTAAGG-TGCCATTTTCCTTTCAAAGCTCACACGAGTTGGTGGCACCCTTT
1 AGTCCTCAAAGAG-CAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTT
** * **** * * * * *
1323195 AGTCCTGGAAGAGGAGGATATTTTTTTCCTTTCAATGCCGATACGAGTTTGTCGCACCCTTT
1 AGTCCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTT
* * * *
1323257 AGTCTTCAAAGAGCAGGATGCCTTTTTCTTTTCAAAGCCCACACGTGTTGGTGGCACCCTTT
1 AGTCCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTT
* * * **
1323319 ATTCCTCAAAGAGCAGGGCACCTTTTTCCTTTCAAAGCCCACACGAGTTTATGGCACCCTTT
1 AGTCCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTT
* * * * * * *
1323381 AGTTCTCAAAGAGCATGATGCCCTTTTCCTTTTAAAGCCCACGCGACTTGGTGGCA-CCTTT
1 AGTCCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTT
* *
1323442 CAGTCCTCAAAGAGCAGGACACCTTTTTCCTTTCAAAGTCCACACGAGTTGGTGGCACCCTTT
1 -AGTCCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTT
* * * * * *
1323505 AGTCCTTAAAGAGCAAGATGCCTTGTTCCTTTCAAAGCCCACACAAGTTGGTGGCACCTTTT
1 AGTCCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTT
** * * *
1323567 AGTCCTGGAAGAGGAGGACACCTTTTTCCTTTCAAAGCCCACACGAGTTTGTGGCACCCTTT
1 AGTCCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTT
* * * * * * * * * *
1323629 ACTCTTCAAAGAGCTGGACACCTTTTTCTTTTCGAAGCTCACTCGAGTTAGTGTCACCCTTT
1 AGTCCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTT
* * * * *
1323691 AGTCCTCAAAGAGCTGGATGCCTTTTTCCTTTCAAAGGCCACCCAAGTTGGTGGCACCCTTT
1 AGTCCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTT
* * * * * **
1323753 AGTCCTCAAAGAGTAGTATGCCTTTTTCTTTTCAAAGCCCACACGAGTTGGTGGTATTCTTT
1 AGTCCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTT
* * * * *
1323815 TGTCCTCAAAG-TCTAGGATGCCTTTTTCCTTTCAAAGCTCATACGAGTTGGTGGCACCCTTT
1 AGTCCTCAAAGAGC-AGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTT
* ** * ** *
1323877 -GCTCCTCAAAGAGCCGGAAC-CCTTTTTTTTTTCAAAGCCCGCAC-AGATTGGTCACACCATTT
1 AG-TCCTCAAAGAGCAGG-ACGCCTTTTTCCTTTCAAAGCCCACACGAG-TTGGTGGCACCCTTT
* ** ** * * * *
1323939 TGTCCTCAAAGAG-ACGGTTGCCTTTTTATTTTCAAAGCACGCATGATTTGGTGGCACCCTTT
1 AGTCCTCAAAGAGCA-GGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTT
* *
1324001 AGTCCTCAAAGAGCAGGACGCCTTTTTCCATTCAAAGCCCACACGAGTTGGTGGCACCTTTT
1 AGTCCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTT
* * * * * * * *
1324063 ACTCCTC-AAGAGTCA-GAAGCCTTTTTCTTTTTAAAGCCTATATGGGTTGGTGGCACCCTTT
1 AGTCCTCAAAGAG-CAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTT
* * * * * *** * * *
1324124 TGTCCTTAAATAGTAGCAAATCTTTTTCCTTTCAATGCCCACATGAGTTGGTGGCACTCTTT
1 AGTCCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTT
* * * * * * *
1324186 AGTCCTTAAAGAGTAGGACACCTTTTTCCTTTCGAAGCCCACGCGGGTTGCTGGCACCCTTT
1 AGTCCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTT
* ** * * * * * * *
1324248 AGCCCAAAAAGAGTAGGATGCCTTTTTCTTTTCAAAGCCCAGATGGGTTGGTGGCACCCTTC
1 AGTCCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTT
* * * * * *
1324310 AGTCCTCAAAGAGCACGATGCTTTTTTCCTTTCAAAGCCTACACGAGTTGGTGGTAGCCTTT
1 AGTCCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTT
* ** * *
1324372 AGTACTCAAAGAGCAGGATTCCTTTTTCGTTTCAAAACCCACACG-GTTTGGTGGC-CCCAATTT
1 AGTCCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGAG-TTGGTGGCACCC--TTT
* * ** * * * *
1324435 -GTCCTCCAAGAGTAGGACGCCTTTTTATTTTCAAAGGCCAGATGTGTTGGTGGCACCCTTT
1 AGTCCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTT
*
1324496 AGTCCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTTGTGGCACCCTTT
1 AGTCCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTT
* ** * * *
1324558 AGTTCTCAAAGAGCATAATGCCTTTTTCCTTTCAAAGCCCACGCAAGTTGGTGGCACCCTTT
1 AGTCCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTT
* * **
1324620 AGTCCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGTCCACATGAGTTGGTGGTGCCCTTT
1 AGTCCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTT
* *
1324682 AGTCCTCAAAGAGCAGGACGCTTTTTTCCCTTT-AAAG-CCACCACGAGTTGGTGGCAGCCTTT
1 AGTCCTCAAAGAGCAGGACGCCTTTTT-CCTTTCAAAGCCCA-CACGAGTTGGTGGCACCCTTT
* * * * ** **
1324744 AGTTCTCAAAGAGTAGGACGCCTATTTCTTTTCAAAGCCCACACGAGTTTTTGGCAATCTTT
1 AGTCCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTT
* * * * * * *
1324806 ACTTCTCAAAGAGCAGGATGCCTTTTTCGTTTCAAAACCCACACGGGTTGGTGGC-CTCATTT
1 AGTCCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCAC-CCTTT
* * * * * * * *
1324868 TGTCCTTAAAGAGTAGGACACCTTTTTCTTTTCAAAGCCCACAAGTGTTAGTGGCACCCTTT
1 AGTCCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTT
* * * * * * *
1324930 AGTCCTCAATGAGCAGGACGCCCTTTTCCTTTTAAAGCTCATACGTGTTTGTGGCACCCTTT
1 AGTCCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTT
* * * * *
1324992 AATTCTCAAAGAGCAGGATGCCTTTTTCCTTTCAAAGCCCACGCGAGTTGGTGGCACCCTTC
1 AGTCCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTT
* * *
1325054 AGTCCTCAAAGAGAAGGACGCCTTTTTCCTTTCAAAG-GCACACGAGTTGGTAGCACCCTTT
1 AGTCCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTT
* * * * * * *
1325115 AGTCTTCGAAGAGTAGGATGCCTTTGTCCTTTCAAAGCCCACACGAGTTTGTGGCACCTTTT
1 AGTCCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTT
* * * * *
1325177 AGTCCTCGAAGTGAAGGACACCTTTTTCCTTTCAAAGCCCACACAAGTTGGTGGCACCCTTT
1 AGTCCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTT
* * * * *
1325239 AGTCTTCAAAGAGCAGGACACCTTTTTCTTTTCAAAGCCCACTCGAGTTGGTGGCACCTTTT
1 AGTCCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTT
* * **
1325301 AGTCCTCAAAGAGCAGGTCGTCTTTTTCCTTTCAAAGCCCACGTGAGTTGGT--CACTCTCTTT
1 AGTCCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCAC-C-CTTT
* * * * *
1325363 AGCCCTCATAGAGTAGGACACCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCTCCCTTT
1 AGTCCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTT
* * * * * * *
1325425 AGTCCTCAAAGCGTAAGATG-CTTTTTTCTTTCAAAGCCCACACGTGGTTGGTGGCACCTTTT
1 AGTCCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACG-AGTTGGTGGCACCCTTT
* * *
1325487 AGTACTTAAAGAGCAAGG-CGCCATTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTT
1 AGTCCTCAAAGAGC-AGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTT
* * ** * * * * * * *
1325549 AATGCTGGAAGAGGAGGACACCTATTTCCTTTCAAAGCCCGCACGAGTTTGTCGCACCTTTT
1 AGTCCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTT
* * * * **
1325611 AGTCTTCAAAGAGTAGGATGCCTTTTTCTTTTCAAAGCCCACTTGAGTTGGTGGCACCCTTT
1 AGTCCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTT
* * * * * *
1325673 AGTCCTCAAAGAGCAAGATG-TTTTCTTCCATTT-AATG-CCACCACGAGTTGGTGGTAGCCTTT
1 AGTCCTCAAAGAGCAGGACGCCTTT-TTCC-TTTCAAAGCCCA-CACGAGTTGGTGGCACCCTTT
* * * * * ** *
1325735 AGTTCTTAAAGAGTAGGACGCCTATTTCTTTTCAAAGCCCACACGAGTTTCTGGCAACCTTT
1 AGTCCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTT
* * * * * * * *
1325797 ACTTCTCAAAGAGCAAGATGCCTTTTTCGTTTCAAAACCCACACGGGTTGGTGGC-CTCATTT
1 AGTCCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCAC-CCTTT
* * * * * * *
1325859 TGTCCTAAAAGAGTAGGACACCTTTTTCTTTTCAAAGCCCACAAGTGTTGGTGGCACCCTTT
1 AGTCCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTT
* * * * * *
1325921 AGTCCTCAATGAGCAGGACACCTTTTTCCTTTCAAAGCTCATACGTGTTTGTGGCACCCTTT
1 AGTCCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTT
* * * *
1325983 AGTTCTCAAAGAGCAGGATGCCTTTTTCCTTTCAAAGCCCACGCGAGTTGGTGGCACCCTTC
1 AGTCCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTT
*
1326045 AGTCCTCAAAGAGCAGGATGCCTTTTTCCTTTCAAAG-CCACACGAGTTGGTGGCACCCTTT
1 AGTCCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTT
* * * * * * *
1326106 AGTCTTCGAAGAGTA-GATGCCTTTGTCCTTTCAAAGCCCACACGAGTTTGTGGCACCTTTT
1 AGTCCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTT
* * * * *
1326167 AGTCCTCGAAGTGAAGGACACCTTTTTCCTTTCAAAGCCCACACAAGTTGGTGGCACCCTTT
1 AGTCCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTT
* * * * *
1326229 AGTCTTCAAAGAGCAGGACACCTTTTTCTTTTCAAAGCCCACTCGAGTTGGTGGCACCTTTT
1 AGTCCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTT
* * * * * * * *
1326291 AGTCCTCAAAGAGCAGGTCGTCTTTTTCCTTTCAATGCCCACGCGAGTTCGTCGCTCTCTTT
1 AGTCCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTT
* * * * * *
1326353 AGCCCTCATAGAGTAGGACACCTTTTTCCTTTCAAAGCCCACACGACTTGGTGGCTCCCTTT
1 AGTCCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTT
* * * * * *** **
1326415 AGTCTTCAAAGCGCAGGATG-CTTTTTTCTTTCAAAGCCCAAACGAGTTGACAGCATTCTTT
1 AGTCCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTT
* * * *** * * * *
1326476 TGTCTTGAAAGAGCAGGACATTTTTTTCTTTTTAAAGCTCACA-TAGGTTGGTGGCACCCTTT
1 AGTCCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGA-GTTGGTGGCACCCTTT
* * * ** * **
1326538 AGTCCTCAAAGAGCAGGACGTCTTTTTCCATTCGAAGTGCAAACGAGTTGGTGGCATTCTTT
1 AGTCCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTT
* * * **
1326600 AGTTCTCAAAGAGCAGGACG-CTTTTTTCTTTCAAAGCCCAAACGAGTTGGTGGCATTCTTT
1 AGTCCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTT
* * * * *
1326661 TGTCCTCAAAGAGCAGGATGCCTTTTTCCTTTCAAAGCCCGCACGAGTCGGTGGCTCCCTTT
1 AGTCCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTT
* * * *
1326723 AG-CTCTCAAAAAGCTAGG-CACCTTTTTCCTTTCAAAGCCCACACGAGTTGGTCGCTCCCTTT
1 AGTC-CTCAAAGAGC-AGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTT
* * * * * *
1326785 AGCCCTCAAAAAGCAGGACACCTTTTTTCTTTCAATGCCCACACGAGTTGGTAGTC-CCCTTT
1 AGTCCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGT-GGCACCCTTT
* * * **
1326847 AGTCCTCAAAGAGCAGGATGCCTTTTTCCTTTCAAAGCGCAAACGAGTTGGTGGCAATCTTT
1 AGTCCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTT
* ** * * ***
1326909 AGTCCTCAAAGAGCAGGACG-CTTTTT--TTTTAAAGCTGAAATGAGTTGGTGGCATTTTTT
1 AGTCCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTT
* * * * * *
1326968 AGTCCTCAAAGAGTAGGATGCTTTTTTCCTTTTAAA-CCTCATACG-GATTGGTAGCACCCTTT
1 AGTCCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCC-CACACGAG-TTGGTGGCACCCTTT
* * * * * *
1327030 AGTCCTTAATGAGTAGGACGCATTTTT-TTTTCAAAGCCCACCCGAGTTGGTGGCACCCTTT
1 AGTCCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTT
* * * * * * * ** *
1327091 AGTCCTTAAAAAGTAGGATGTCTTTTTCGTTTCAAAGCCCACACAAGTTGGTGGTGCCATTT
1 AGTCCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTT
* * * * * ** *
1327153 TGTTCTCAAAGAGCAAGACACCTTTTTCTTTTCAAAGCCCACAC--G-TGGTGGCACTATGT
1 AGTCCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTT
* *** *
1327212 AGTCCTCAATGAGCAGGACATTTTTTTCCTTTCAAAGCCCACACGAGTTTGTGGCACCCTTT
1 AGTCCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTT
* * * * * * * *
1327274 AGTTCTTAAAGAGCAGGATGCCGTTTTCCCTTCAAAGCCCACGCGAGTTGGTGGCATCCTTC
1 AGTCCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTT
* * *
1327336 AGTCCTCAAAGAGCAGGATGCCATTTTCCTTTCAAAGCCCACACGAGTTAGTGGCACCCTTT
1 AGTCCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTT
** ** *
1327398 AGTCCTCAAAGAGTGGGTTGCCTTTTTCATTTCAAAGCCCACACGAGTTGGTGGCACCCTTT
1 AGTCCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTT
** ** **
1327460 AGTCCTCAAAGAGTGGGTTGCCTTTTTCAATTCAAAGCCCACACGAGTTGGTGGCACCCTTT
1 AGTCCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTT
* * * * * ** ***
1327522 AGTCCTCAAAGAGCAGGATG-CTTTTTTCTTTCGATGCCCAAACGAGTTGACGGCATTTTTT
1 AGTCCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTT
* * * * * * * **
1327583 TGTCTTGAAAGAGCAGGACACTTTTTTCTTTTTAAAGCTTACAC-AGGTTGGTGGCACCCTTT
1 AGTCCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGA-GTTGGTGGCACCCTTT
* * * * ** * **
1327645 AGTCCTCAAAGCGCAGGACGTCTTTTTCCATTCGAAGTGCAAACGAGTTGGTGGCATTCTTT
1 AGTCCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTT
* * ** *
1327707 AGTCCTCAAAAAGCAGGATG-CTTTTTCCTTTCAAAGCCCACACGAGTTGGCCGC-TCCTTT
1 AGTCCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTT
* * * * * *
1327767 AGCCCTCAATGAGTAGGACACCTTTTTCCTTTCAAAGCCCACACGACTTGGTGGCTCCCTTT
1 AGTCCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTT
* * * * * ** **
1327829 AGTCTTCAAAGAGCAGGATG-CTTTTTTCTTTGAAAGCCCAAACGAGTTGACGGCATTCTTT
1 AGTCCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTT
* * * * * * * * *
1327890 TGTCTTGAAAGAGCAGGACACTTTTTTCTTTTTAAAGCTCACA-TAGGTTGGTGGCACCCTTT
1 AGTCCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGA-GTTGGTGGCACCCTTT
* * * ** * ** *
1327952 AGTCCTCAAAGAGCAGGACGTCTTTTTCCATTCGAAGTGCAAACGAGTTGGTGGCATTCATT
1 AGTCCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTT
* * * * **
1328014 AGTCCTCAAAGAGCAGGACG-CTTTTTTCTTTCAAAGTCCAAACGAGTTGGTGGTATTCTTT
1 AGTCCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTT
* * * * * * * *
1328075 TGTCCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCGCATGGGTCGATGGCACCATGT
1 AGTCCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTT
* * ** * *
1328137 AGTCCTCAATGAGCAGGTCATCTTTTTCCTTTGAAAGCCCACACGAGTTTGTGGCACCCTTT
1 AGTCCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTT
* * * *
1328199 AGTTCTTAAAGAGCAGGATGCCTTTTTCCTTTCAAAGCCCACACGAGTTAGTGGCACCCTTT
1 AGTCCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTT
** * *
1328261 AGTCCTCAAAGAGTGGGATGCCTTTTTCATTTCAAAGCCCACACGAGTTGGTGGCACCCTTT
1 AGTCCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTT
* * * * * * * * * **
1328323 AGTCCTCAAAGAGTAGGACGTCTTATGCCATTCAAAGCGCAAATGATTTGGTGGCATTCTTT
1 AGTCCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTT
* ** * * * * **
1328385 AGTCCTCAAAGAGCAGGAC-ACTTTTTTTTTTCAAAGCCCAAATGAGTTAGCGGCATTCTTT
1 AGTCCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTT
* * *
1328446 TGTCCTCAAAGA-CTAGGATGCCTTTTTCCTTTCAAAGCCCACACGAGCTGGTGGCACCCTTT
1 AGTCCTCAAAGAGC-AGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTT
* * * * * * * * *
1328508 ACTCTTCAAAGCGCCGGAAGCCTTTTTCTTTTCAAAGCTTGCACA-G-GTTGGTGGCGCCATTT
1 AGTCCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGC--CCACACGAGTTGGTGGCACCCTTT
* * * * * *
1328570 TGTCCTCAAAGAG-AGGGACACCTTTTTCTTTTCAAAGCCCACGCGAGTTGGTGGCACACTAT
1 AGTCCTCAAAGAGCA-GGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTT
*
1328632 AGTCCTCAAAGAGCAGGACGCATTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTT
1 AGTCCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTT
** * * * * *
1328694 ACCCCTCAAAGAGCCA-GAAGCCTTTTTCTTTTCAAAGCCCACATGGGTTGGTGGAACCCTTT
1 AGTCCTCAAAGAG-CAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTT
* * * ** * * *
1328756 TGTCCTTAAAGAGTAGGACATCTTTTTCCTTTCAATGCCCACACGAGTTGGTAGCACTCTTT
1 AGTCCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTT
* * * * ** *
1328818 ATTGCTCAAAGAGTAGGACACCTTTTTCCTTTCAAAAACCACACGGGTTGGTGGCACCCTTT
1 AGTCCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTT
* * * * * * * * * * *
1328880 AGTTCACAAAGAGCAAGATGCCTTTTTCTTTTCAAAGCCTAGATGGGTTGGTAGCACCCTTC
1 AGTCCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTT
* * * * *
1328942 AGTCCTCAAAGAGCAGAATGCTTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGTAGCCTTT
1 AGTCCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTT
* * * * * * * * *
1329004 AGTCCTCAAAGAGTAGGATGCCCTTTTCGTTTCAAAACCCACATGGGTTGATGGC-CTCAATTT
1 AGTCCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCAC-C-CTTT
* * * * * *
1329067 -GTCCTCCAAGAGTAGGATC-CATTTTTCTTTTCAAAGCCTACACGTGTTGGTGGCACCCTTT
1 AGTCCTCAAAGAGCAGGA-CGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTT
* * *
1329128 AGTCCACAAAGAGCAGGATGCCTTTTTCCTTTCAAAGCCCACACGAGTTTGTGGCACCCTTT
1 AGTCCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTT
* * * * * *
1329190 AGTTCTTAAAGAGCACGATGCCTTTTTCCTTTCAAAGCCCACGCGAGTTGGTGGCACCCTTC
1 AGTCCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTT
* * * * * * *
1329252 AGTCCTCAAAGAGTAGGTCACCTTTTTCCTTTCAAAGTCCACATGAGTTGATGTCACCCTTT
1 AGTCCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTT
* *
1329314 AGTCCTCAAAGAGCAGGATGCCTTTTTCCTTTTAAAGCCCACACG-GTTGGTGGCACCCCTTT
1 AGTCCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCA-CCCTTT
* * *
1329376 AGTCCTTAAAGAGCAAGG-CACCATTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTT
1 AGTCCTCAAAGAGC-AGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTT
** * * * *
1329438 AGTCCTGGAAGAGGAGGACACCTTTTTTCCTTTCAAAGTCCACACGAGTTTGTGGCACCCTTT
1 AGTCCTCAAAGAGCAGGACGCC-TTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTT
* * * * * *
1329501 AGTCTTCAAAGAGTAGGATGCCTTTTTCTTTTCAAAGCCCACTCGAGTTGGTAGCACCCTTT
1 AGTCCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTT
*
1329563 AGTCCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAG-CCACCACGAGTTGGTGGCAGCCTTT
1 AGTCCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCA-CACGAGTTGGTGGCACCCTTT
* * * * * * *
1329625 AGTTCTCAAAGAGTAGGAAGCCTTTTTCTTTTCAAAGCCCGCACAAGTTTGTGGCACCCTTT
1 AGTCCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTT
* * * * * *
1329687 AGTTCTCGAAGAGCAGGATGCCTTTTTCGTTTCAAAACCCACACGAGTTGGTGGC-CTCATTT
1 AGTCCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCAC-CCTTT
* ** * * * * * *
1329749 TGTCCTCAAAGAATAGGACACTTTTTTCTTTTCAAAGCCCAAAAGTGTTGGTGGCACCCTTT
1 AGTCCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTT
* * * * * * *
1329811 AGTCCTCAATGAGCAGGACGTCTTTTTCCTTTCAAAGCTCATACGTGTTTGTGGTACCCTTT
1 AGTCCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTT
* * * * * *
1329873 AGTTCTCAAAGAGCACGATGCCTTTTTCCTTTCAAAGCCCACGCTAGTTGGTGGCACCCTTC
1 AGTCCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTT
* * * *
1329935 AGTCCTCAAAGAGTAGGACACCTTTTTCCTTTCAAAGCCGACACGAGTTGGTGGCACCCTAT
1 AGTCCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTT
* * * * *
1329997 AGTCTTCAAAGAGTAGGATGCCTTTGTGCTTTCAAAGCCCACACGAGTTGGTGGCA-CCTTT
1 AGTCCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTT
* * * *
1330058 AGTCCTCGAAGTGAAGGACACCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTT
1 AGTCCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTT
* * * **
1330120 AGTCTTCAAAGAGCAGGACACTTTTTTCCTTTCAAAGCCCACACGAGTTAATGGCACCCTTT
1 AGTCCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTT
* * * * ** *
1330182 AGTCCTCAAAGAGCAAGATGCCTTTTTCCTTTCAAAGCCCACGCGAGTTGGTCGTTCTCTTT
1 AGTCCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTT
* * ** *
1330244 AGCCCTCAATGAATAGGACACCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTT
1 AGTCCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTT
* * * * **
1330306 AGTCTTCAAAGAGCAGGACACTTTTTTCTTTTCAAAGCCCACACGAGTTAATGGCACCCTTT
1 AGTCCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTT
* * * * ** *
1330368 AGTCCTCAAAGAGCAAGATGCCTTTTTCCTTTCAAAGCCCACGCGAGTTGGTCGTTCTCTTT
1 AGTCCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTT
* * ** * * * * **
1330430 AGCCCTCAATGAATAGGACACCTTTTTCCTTTCAAAGCCCATACCACTTGGTGGTTCCCTTT
1 AGTCCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTT
* * * * ** **
1330492 AGTCCTCAAAGAGTAGGATG-CTTTTTTCTTTCAAAGCCCAAACGAGTTGACGGCATTCTTT
1 AGTCCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTT
* * * * * * * ** *
1330553 TGTCTTGAAAGAGCAGGACACTTTTTTCTTTTTAAAGCTTACA-TAGGTTGGTGGCACCCTTT
1 AGTCCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGA-GTTGGTGGCACCCTTT
* ** * * ** * ***
1330615 AGTCCTCAAAGAGTAGGACAACTTTTTCCATTCGAAGTGCAAACGAGTTGGTGGCATTATTT
1 AGTCCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTT
* * * * * **
1330677 AGTCCTCAAAGAGCAGGAC-ACTTTTTTCTTTCAAAGGCCAAACGAGTTGGTGGTATTCTTT
1 AGTCCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTT
* ** * * * *
1330738 TGTCCTCAAAGATTAGGACACCTTTTT-CTTTTAATAACCCACACGTGTTGGTGGCACCCTATT
1 AGTCCTCAAAGAGCAGGACGCCTTTTTCCTTTCAA-AGCCCACACGAGTTGGTGGCACCCT-TT
* * * * * * *
1330801 -GTCCTTAATGAGTAGGACACTTTTTTCCTTTCAAAGCCCCCACGAGTTTGTGGCACCCTTT
1 AGTCCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTT
* * * * *
1330862 AGTTCTCAAAGAGCAGGATGCCATTTTCCTTTCAAAGCCCACGCGAGTTGGTGGCACCCTTC
1 AGTCCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTT
* * *
1330924 AGTCCTCAAAGAGCAAGACGCCTTTTTCCTTTCAATGCCCACAAGAGTTGGTGGCACCCTTT
1 AGTCCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTT
** * * * *
1330986 AGTTATCAAACAGCAGGACGCCTTTTTCCTTTCAAAGCCCGCA-TAGTT-GTAGCACCCTTT
1 AGTCCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTT
* * * * * * *
1331046 AGTCCTCAAAGAGCAAGATGTCTTTTTCATTTCAAAACCCACATGAGTTGGTGGCACCCATT
1 AGTCCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTT
** * * * *
1331108 AGTCCTTGAAGAGGAGGACACCTTTTTCCTTTCAAAGCCCACACGAGTTAGTGGCTCCCTTT
1 AGTCCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTT
* * ** * * * * *
1331170 AGTCTTCCAAGAGCAAAACACCTTTTT-CTTTCCAAAGCCCACTCGAGTCGATGGCAACCTTT
1 AGTCCTCAAAGAGCAGGACGCCTTTTTCCTTT-CAAAGCCCACACGAGTTGGTGGCACCCTTT
* * * * *
1331232 AATCCTCAAGGAGCAGGATGCCTCTTTTCCTTTCAAAGCCCACACGAGTTGGTGGTAGCCTTT
1 AGTCCTCAAAGAGCAGGACGCCT-TTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTT
* * * * * * * * *
1331295 AGTCCTCAAAAAGGAAGATGCCTTTTTCCTTTTAAAGCCCACACGGGTCGGTGGCTCACTTT
1 AGTCCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTT
* * * * * * * * *
1331357 AGCCCTCAAAAAGTAGGACACCTTTTTCCTTTCAAAGCCGACACGATTTGGTCGCTCCTTTT
1 AGTCCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTT
* * * * *
1331419 AGCCCTCAAAAAGTAGGACACCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCTCCCTTT
1 AGTCCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTT
* ** * * ** **
1331481 AGTCCTCAAAGAGTAGGAC-ATTTTTTTCTTTCAAAGCCCAAACGAGTTCATGGCATTCTTT
1 AGTCCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTT
* * ** * *
1331542 TGTCCTAAAAGAGCAGGAC-AATTTTTTCTTTCTAAAGCTCAC-C-AGGTTGGTGGCACCCTTT
1 AGTCCTCAAAGAGCAGGACGCCTTTTTCCTTTC-AAAGCCCACACGA-GTTGGTGGCACCCTTT
*
1331603 AGTCCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTTGTGGCACCCTTT
1 AGTCCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTT
* * * ** * *
1331665 AGTTCTCAAAGAGCACGATGCCTTTTTCCTTTCAAAGCCCACGTGAGTCGGTGGCACCCTTC
1 AGTCCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTT
* * * *
1331727 AGTCCTCAAAGACCAAGATGCCTTTTTCCTTTCAAAGTCCACACGAGTTGGTGGCACCCTTT
1 AGTCCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTT
* * * *
1331789 AGTCTTCAAAGAGCAGGATGCCTTTTTCGTTTCAAAGCCCACATG-GTTGGTGGCACCCTTT
1 AGTCCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTT
* * * *
1331850 AGTCCTTAAAGAGCATGG-CACCATTTTCCTTTCAAAGCCCACACGAGTTGATGGCACCCTTT
1 AGTCCTCAAAGAGCA-GGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTT
*** * * * * *
1331912 AGTCCGGGAAGAGGAGGACACTTTTTTCCTTTCAAAGCCCACACGAGTTTGTAGCACCCTTT
1 AGTCCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTT
* * * * * * * *
1331974 AGTCTTCAAAGTGTAGGATGCCTTTTTCTTTTCAAAGCCCACATGAGTTTGTGGCACACTTT
1 AGTCCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTT
* * * * * **** *
1332036 AGTTCTCAAAGAGCAGGATC-CCTTTTTCGTTTCAAAACCCACATGGGTTGGTGTTTTCATTT
1 AGTCCTCAAAGAGCAGGA-CGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTT
* * * ** * *
1332098 TGTCCTCAAAGAGTAGGACACCTTTTTTTTTTCAAAGCCCACAAGTA-TTGGTGGCACCTTTT
1 AGTCCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACG-AGTTGGTGGCACCCTTT
* * * * * * ** *
1332160 AGTCCTCAATGAGCAGGACGCCTTTCTCCCTTCAAAGCTCATACGTGTTTATGGCACCCTTA
1 AGTCCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTT
* * * * * *
1332222 AGTTCTCAAAGAGCAGGATGCTTTTTTCCTTTCAAAGCCCACGCAAGTTGGTGGCACCCTTC
1 AGTCCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTT
* * * *
1332284 AGTCCTCAAAGAGCAGGACGTCTTTTTCCTTTCAAAGCCCACGCAAGTTGGTGGCACCCTTC
1 AGTCCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTT
*
1332346 AGTCCTCAAAGAGCAGGACGGCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTT
1 AGTCCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTT
* * * * * *
1332408 AGTCTTCAAGGAGTAGGATGCCTTTGTCCTTTCAAAGCCCACATGAGTTGGTGGCA-CCTTT
1 AGTCCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTT
* * * * * * * * *
1332469 AGTCCTCGAAGTGAAGGACACCTTTTTCCTTTGAAAGCCCACACGCGTCGATGGCACCTTTT
1 AGTCCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTT
* * * * *
1332531 AG-CCTTCAATGAGCATGACACCTTTTTCTTTTCAAAGCCCACTCGAGTTGGTGGCACCCTTT
1 AGTCC-TCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTT
* * * * *
1332593 AGTCCTCAAAGAGCAGGACGCCTTTTTTCTTTCAAAGCCCACGCGAGTTGGTCGCTCTCTTT
1 AGTCCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTT
* * * * *
1332655 AGCCCTCAAAGAGTAGGACACCTTTTTCCATTCAAAGCCCACACGAGTTGGTGGCTCCCTTT
1 AGTCCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTT
* * * * * ** **
1332717 AATCCTCAAAGTGCAGGATG-CTTTTTTCTTTCAAAGCCCAAACGAGTTGACGGCATTCTTT
1 AGTCCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTT
* * * * * * * * * * *
1332778 TGTCTTGAAAAAGCATGACACTTTTTTCTTTTTAAAGCTCACAC-AGGTTGGGGGCACCCTTT
1 AGTCCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGA-GTTGGTGGCACCCTTT
* * ** * **
1332840 AGTCCTCAAAGAGCAGGACGTCTTTTTCCATTCAAAGTGCAAACGAGTTGGTGGCATTCTTT
1 AGTCCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTT
* * * **
1332902 AGTCCTCAAAGAGCAGGACG-CTTTTTTCTTTCAAAGCCCAAACGAGTTGGTGGTATTCTTCT
1 AGTCCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTT-T
* * * * * * * * *
1332964 -GTCCTCAAAGAGAAAGACACCTTTTTCCTTTCAAAGCTCGCATGGGTCGGTGGCTCCCTTT
1 AGTCCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTT
* * * * * ** *
1333025 AG-CTCTTAAAAAGCAGGGCACCTTTTTCGTTTCAAAGCCCACACGAGTTGGTCTCTCCCTTT
1 AGTC-CTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTT
* * * * * *
1333087 AGCCCTCAAAGAGCAGGACACCTTTTTCCTTTCAATGCCCACACAACTTGGTGGCCCCCTTT
1 AGTCCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTT
* * ** * *
1333149 AGTCCTTAAAGAGTAGGACATCTTTTTCCTTTCAATGCCCACACGAGTTGGTGGCA--CTCT
1 AGTCCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTT
* * *
1333209 --TCCTCAAAGAGTAGGACACCTTTTTCCTTTCAAAGCCCACACGGGTTGGTGGCACCCTTT
1 AGTCCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTT
1333269 AGTCC
1 AGTCC
1333274 ATATTTCTTT
Statistics
Matches: 13384, Mismatches: 2912, Indels: 586
0.79 0.17 0.03
Matches are distributed among these distances:
58 216 0.02
59 154 0.01
60 112 0.01
61 1789 0.13
62 10471 0.78
63 445 0.03
64 68 0.01
65 16 0.00
66 28 0.00
67 12 0.00
68 10 0.00
69 14 0.00
70 16 0.00
71 14 0.00
72 11 0.00
73 2 0.00
74 6 0.00
ACGTcount: A:0.23, C:0.26, G:0.20, T:0.31
Consensus pattern (62 bp):
AGTCCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTT
Found at i:1316796 original size:230 final size:229
Alignment explanation
Indices: 1316394--1316847 Score: 551
Period size: 230 Copynumber: 2.0 Consensus size: 229
1316384 GGCACCCTTT
*
1316394 AGTCCTCAAAGAGCAAGATGCCTTTTTCCTTTCAAAGCCCACACGGTTGGTGGCACTCTTTAGTC
1 AGTCCTCAAAGAGCAAGATGCCTTTTTCCTTTCAAAGCCCACACGGTTGCTGGCACTCTTTAGTC
* * * *
1316459 CTTAAAGAGCAAGGCGTCATTTTCCTTTCAAAGACCACACGAGGTGGTGGCACTCTATAGTCCTG
66 CTCAAAGAGCAAGGCGCCATTTTCCTTTCAAAGACCACACGAGGTGGTGGCACTCAATAGTCCTC
* * * * *
1316524 AAAGAGTATGACACCTCTTTCCCTTCAAAGCCCACGCGGGTTGGTGGTACCTTTTAGTCCGCAAA
131 AAACAGTAAGACACCTCTTTCCCTTCAAAGCCCACACGGGTTGGTGGTACCCTGTAGTCCGCAAA
* * *
1316589 GAGCAGGACATCTTTTTCTTTTCAAAGCCTAGTC
196 GAGCAGGACACCTTTTCCCTTTCAAAGCCTAGTC
* * *
1316623 AGTCCTCAAAGAGCAGGATGCTTTTTTCCTTTCAAAGCCCACATGAGTTGCTGGCAGC-CTTTAG
1 AGTCCTCAAAGAGCAAGATGCCTTTTTCCTTTCAAAGCCCACACG-GTTGCTGGCA-CTCTTTAG
* * * * *
1316687 TCCTCAAATAGC-AGGATGCCTTTTTCGTTTCAAA-ACCCACACG-GGTTGGTGGC-CTCAATTT
64 TCCTCAAAGAGCAAGG-CGCCATTTTCCTTTCAAAGA-CCACACGAGG-TGGTGGCACTCAA-TA
* * * *
1316748 GTCCTCCAACAGTAAGACACCT-TTTTCTTTTAGAAGCCCACACGGGTTGGTGGTACCCTGTAGT
125 GTCCTCAAACAGTAAGACACCTCTTTCCCTTCA-AAGCCCACACGGGTTGGTGGTACCCTGTAGT
* * *
1316812 CCTCAATGAGTAGGACACCTTTTCCCTTTCAAAGCC
189 CCGCAAAGAGCAGGACACCTTTTCCCTTTCAAAGCC
1316848 CACAGGAGTT
Statistics
Matches: 190, Mismatches: 28, Indels: 13
0.82 0.12 0.06
Matches are distributed among these distances:
229 59 0.31
230 130 0.68
231 1 0.01
ACGTcount: A:0.24, C:0.27, G:0.20, T:0.29
Consensus pattern (229 bp):
AGTCCTCAAAGAGCAAGATGCCTTTTTCCTTTCAAAGCCCACACGGTTGCTGGCACTCTTTAGTC
CTCAAAGAGCAAGGCGCCATTTTCCTTTCAAAGACCACACGAGGTGGTGGCACTCAATAGTCCTC
AAACAGTAAGACACCTCTTTCCCTTCAAAGCCCACACGGGTTGGTGGTACCCTGTAGTCCGCAAA
GAGCAGGACACCTTTTCCCTTTCAAAGCCTAGTC
Found at i:1316909 original size:124 final size:124
Alignment explanation
Indices: 1316623--1335337 Score: 17280
Period size: 124 Copynumber: 151.3 Consensus size: 124
1316613 AAGCCTAGTC
* * * *
1316623 AGTCCTCAAAGAGCAGGATGCTTTTTTCCTTTCAAAGCCCACATGAGTTGCTGGCAGCCTTTAGT
1 AGTCCTCAAAGAGCAGGATGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGT
* * * * * *
1316688 CCTCAAATAGCAGGATGCCTTTTTCGTTTCAAAACCCACACGGGTTGGTGGC-CTCAATTT
66 CCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCAC-C-CTTT
* * * * ** * * * *
1316748 -GTCCTCCAACAGTAAGACACCTTTTT-CTTTTAGAAGCCCACACGGGTTGGTGGTACCCTGTAG
1 AGTCCTCAAAGAGCAGGATGCCTTTTTCCTTTCA-AAGCCCACACGAGTTGGTGGCACCCTTTAG
* * * * * *
1316811 TCCTCAATGAGTAGGACACCTTTTCCCTTTCAAAGCCCACAGGAGTTTGTGGCACCCTTT
65 TCCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTT
* * ** ** *
1316871 AGTTCTCAAAAAGCAGGATGCCGCTTTCCTTTCAAAGCCCACGTGAGTTGGTGGCACCCTTCAGT
1 AGTCCTCAAAGAGCAGGATGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGT
*
1316936 CCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGTCCACACGAGTTGGTGGCACCCTTT
66 CCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTT
** ** *
1316995 AGTCCTCAAAGAGCAGGCCGCCTTTTTCCTTTCAAAGCCTGCA-TAGTTGGTGGCACCCTTTAGT
1 AGTCCTCAAAGAGCAGGATGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGT
* ** * * *
1317059 CCTCAAAGAGTAAAACGCCTTTTTCCTTTCAAAACCCATACGAGTTGGTGGCACCCATT
66 CCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTT
* * ** * *
1317118 AGTCCTTAAAGAGGAGGACACCTTTTTCCTTTCAAAGCCCACACGAGTTGATGGCTCCCTTTAGT
1 AGTCCTCAAAGAGCAGGATGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGT
* * * * * * *
1317183 CTTCTATGTGCAGGACGCCTTTTTCTTTTCAAAGCCCACTCGAGTTGGTGGCAGCCTTT
66 CCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTT
* * * * *
1317242 AATCCTCAAAGAGCAGGATACCTTTTTTCCTTTCAAAACCCACACGTGTTGGTGGCAGCCTTTAG
1 AGTCCTCAAAGAGCAGGATGCC-TTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAG
* ** * * * * *
1317307 TCCTCAAAGAGCAAGTTGCCTTTTTCCTTTTAAGGCCCACACGGGTCGGTGGCTCCCTTT
65 TCCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTT
* * * ** ** *
1317367 -TTCCTTTCAAAGCCCATACGAGTTTATGGCACCCTTTAGTTCTCAAAG---AGCACGA--TGCC
1 AGTCC--TCAAAG---A-GC-AG--GAT-GC-CTTTTTCCTT-TCAAAGCCCA-CACGAGTTG-G
**** * ** * ** *
1317426 T-TTTTCCTTTCAAAG-CCT-ACACGAGTTGGTGGCAGCCTTCAGTCCTTTCAAAGCCCACACCA
52 TGGCACCCTTT---AGTCCTCA-AAGAG-CAG-GAC-GCCTT-TTTCCTTTCAAAGCCCACACGA
* * *
1317488 GTTGGTCGCTCCTTTT
109 GTTGGTGGCACCCTTT
* * *** * ** *
1317504 AG-CACTCAAAAAGTAGGACAACTTTTTCCTTTCAAAGCCCACAAGAGTTGGTGGGTCCATTTAG
1 AGTC-CTCAAAGAGCAGGATGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAG
* * * * * * ** **
1317568 ---TCAAAGAGTAGGAC-ACTTTTTTCTTTGAAAGCCTAAACGAGTTCATGGCATTCTTT
65 TCCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTT
* * ** * * ** *
1317624 TGTCCTAAAAGAGCAGGACACTTTTTTCTTTTTGAAGCTCACAC-AGGTTGGTGGCACCCTTTAG
1 AGTCCTCAAAGAGCAGGATGCCTTTTTCCTTTCAAAGCCCACACGA-GTTGGTGGCACCCTTTAG
* * * * *
1317688 TCCTCAAAAAGCATGATGCCTTTTTCCTTTCAAAGCCCATACGAGTTTGTGGCACCCTTT
65 TCCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTT
* * * * * * *
1317748 AGTTCTCAAAGAGCATGATGCCTTTTTCCTTTCAAAGCCAACATGAGTTGGTCGCTCCTTTTAG-
1 AGTCCTCAAAGAGCAGGATGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGT
* * *** * *
1317812 CACTCAAAAAGTAGGATAACTTTTTCCTTTCAAAGCCCACGCGAGTTGGTGGCTCCCTTT
66 C-CTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTT
* * * *** ** *
1317872 AG---TCAAAGAGTAGGA--CACTTTTTTCTTTCAAAGCCCAAACGAGTTCACGGCATTCTTTTG
1 AGTCCTCAAAGAGCAGGATGC-CTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAG
* * * * ** * * *
1317932 TCCTAAAAGAGCAGGACACTTTTTTCTTTTTGAAGCTCACAC-AGGTTAGTGGCACCCATT
65 TCCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGA-GTTGGTGGCACCCTTT
* * * *
1317992 AGTCCTCAAAGAGCAGGATGCCTTTTTCTTTTCAAAACCCACGCGAGTTGGTGGCACCCTTCAGT
1 AGTCCTCAAAGAGCAGGATGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGT
* * * *
1318057 CCTCAAAGAGCAAGACGCCGTTTTCCTTTCATAGTCCACACGAGTTGGTGGCACCCTTT
66 CCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTT
* * *
1318116 AGTCCTCAATGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACG-GTTGGTGGCACACTTTAGT
1 AGTCCTCAAAGAGCAGGATGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGT
* * * * *
1318180 CCTTAAAGAGTAAGG-TGCCATTTTCCTTTCAAAGCTCACACGAGTTGGTGGCACCCTTT
66 CCTCAAAGAG-CAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTT
** * *** * * * *
1318239 AGTCCTGGAAGAGGAGGATATTTTTTTCCTTTCAAAGCCGATACGAGTTTGTCGCACCCTTTAGT
1 AGTCCTCAAAGAGCAGGATGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGT
* * * *
1318304 CTTCAAAGAGCAGGATGCCTTTTTCTTTTCAAAGCCCACACGTGTTGGTGGCACCCTTT
66 CCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTT
*** **
1318363 AGTCCTCAAAGAGCAGGGCACCTTTTTCCTTTCAAAGCCCACACGAGTTTATGGCACCCTTTAGT
1 AGTCCTCAAAGAGCAGGATGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGT
* * * * * * *
1318428 TCTCAAAGAGCATGATGCCCTTTTCCTTTTAAAGCCCACGCGACTTGGTGGCA-CCTTT
66 CCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTT
* *
1318486 CAGTCCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGTCCACACGAGTTGGTGGCACCCTTTAG
1 -AGTCCTCAAAGAGCAGGATGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAG
* ** * * * *
1318551 TCCTTAAAGAGCAACATGCCTTGTTCCTTTCAAAGCCCACACAAGTTGGTGGCACCTTTT
65 TCCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTT
** * ** * *
1318611 AGTCCTGGAAGAGGAGGACACCTTTTTCCTTTCAAAGCCCACACGAGTTTGTGGCACCCTTTACT
1 AGTCCTCAAAGAGCAGGATGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGT
* * * * * * * * *
1318676 CTTCAAAGAGCTGGACACCTTTTTCTTTTCGAAGCTCACTCGAGTTAGTGTCACCCTTT
66 CCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTT
* * * *
1318735 AGTCCTCAAAGAGCTGGATGCCTTTTTCCTTTCAAAGGCCACCCAAGTTGGTGGCACCCTTTAGT
1 AGTCCTCAAAGAGCAGGATGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGT
* * * * * **
1318800 CCTCAAAGAGTAGTATGCCTTTTTCTTTTCAAAGCCCACACGAGTTGGTGGTATTCTTT
66 CCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTT
* * * *
1318859 TGTCCTCAAAG-TCTAGGATGCCTTTTTCCTTTCAAAGCTCATACGAGTTGGTGGCACCCTTT-G
1 AGTCCTCAAAGAGC-AGGATGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAG
* ** * * ** *
1318922 CTCCTCAAAGAGCCGGAAC-CCTTTTTTTTTTCAAAGCCCGCAC-ATATTGGTCACACCATTT
65 -TCCTCAAAGAGCAGG-ACGCCTTTTTCCTTTCAAAGCCCACACGA-GTTGGTGGCACCCTTT
* * ** * * * *
1318983 TGTCCTCAAAGAG-ACGGTTGCCTTTTTATTTTCAAAGCACGCATGATTTGGTGGCACCCTTTAG
1 AGTCCTCAAAGAGCA-GGATGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAG
* *
1319047 TCCTCAAAGAGCAGGACGCCTTTTTCCATTCAAAGCCCACACGAGTTGGTGGCACCTTTT
65 TCCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTT
* * * * * * * * *
1319107 ACTCCTC-AAGAGCCA-GAAGCCTTTTTCTTTTTAAAGCCTATATGGGTTGGTGGCACCCTTTTG
1 AGTCCTCAAAGAG-CAGGATGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAG
* * * * *** * * *
1319170 TCCTTAAATAGTAGCAAATCTTTTTCCTTTCAATGCCCACATGAGTTGGTGGCACTCTTT
65 TCCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTT
* * ** * * * * *
1319230 AGTCCTTAAAGAGTAGGACACCTTTTTCCTTTCGAAGCCCACGCGGGTTGCTGGCACCCTTTAGC
1 AGTCCTCAAAGAGCAGGATGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGT
** * * * * * * *
1319295 CCAAAAAGAGTAGGATGCCTTTTTCTTTTCAAAGCCCAGATGGGTTGGTGGCACCCTTC
66 CCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTT
* * * *
1319354 AGTCCTCAAAGAGCAGGATGCTTTTTTCCTTTCAAAGCCTACACGAGTTGGTGGTATAGCCTTTA
1 AGTCCTCAAAGAGCAGGATGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGG--CACCCTTTA
* ** * * *
1319419 GTACTCAAAGAGCAGGATTCCTTTTTCGTTTCAAAACCCACACGGGTTGGTGGC-CCCAATTT
64 GTCCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCC--TTT
* * * ** * * * *
1319481 -GTCCTCCAAGAGTAGGACGCCTTTTTATTTTCAAAGGCCAGATGTGTTGGTGGCACCCTTTAGT
1 AGTCCTCAAAGAGCAGGATGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGT
*
1319545 CCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTTGTGGCACCCTTT
66 CCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTT
* ** * *
1319604 AGTTCTCAAAGAGCATAATGCCTTTTTCCTTTCAAAGCCCACGCAAGTTGGTGGCACCCTTTAGT
1 AGTCCTCAAAGAGCAGGATGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGT
* * *
1319669 CCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGTCCACATGAGTTGGTGGCGCCCTTT
66 CCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTT
* * * *
1319728 AGTCCTCAAAGAGCAGGACGCTTTTTTCCCTTT-AAAG-CCACCACAAGTTGGTGGCAGCCTTTA
1 AGTCCTCAAAGAGCAGGATGCCTTTTT-CCTTTCAAAGCCCA-CACGAGTTGGTGGCACCCTTTA
* * * * ** **
1319791 GTTCTCAAAGAGTAGGACGCCTATTTCTTTTCAAAGCCCACACGAGTTTCTGGCAATCTTT
64 GTCCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTT
* * * * * * *
1319852 ACTTCTCAAAGAGCAGGATGCCTTTTTCGTTTCAAAACCCACACGGGTTGGTGGC-CTCATTTTG
1 AGTCCTCAAAGAGCAGGATGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCAC-CCTTTAG
* * * * * *
1319916 TCCTTAAAGAGTAGGACACCTTTTTCTTTTCAAAGCCCACAAGTGTTGGTGGCACCCTTT
65 TCCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTT
* * * * * * * * *
1319976 AGTCCTCAATGAGCAGGACGCCCTTTTCCTTTTAAAGCTCATACGTGTTTGTGGCACCCTTTAAT
1 AGTCCTCAAAGAGCAGGATGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGT
* * * *
1320041 TCTCAAAGAGCAGGATGCCTTTTTCCTTTCAAAGCCCACGCGAGTTGGTGGCACCCTTC
66 CCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTT
* * *
1320100 AGTCCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAG-GCACACGAGTTGGTAGCACCCTTTAGT
1 AGTCCTCAAAGAGCAGGATGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGT
* * * * * *
1320164 CTTCGAAGAGTAGGATGCCTTTGTCCTTTCAAAGCCCACACGAGTTGGTGGCACCTTTT
66 CCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTT
* * * * * * *
1320223 AGTCCTCAAAGAGCAGG-TCGTCTTTTTCCTTTTAAAGCCCACGCGAGTTCGTCGCTCTCTTTAG
1 AGTCCTCAAAGAGCAGGAT-GCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAG
* * * * * * *
1320287 CCCTCATAGAGTAGGACACCTTTTTTCTTTCAAAGCCCACACGACTTGGTGGCTCCCTTT
65 TCCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTT
* * * * *** ** *
1320347 AGTCTTCAAAGCGCAGGATG-CTTTTTTCTTTCAAAGCCCAAACGAGTTGACAGCATTCTTTTGT
1 AGTCCTCAAAGAGCAGGATGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGT
* * * * * * * *
1320411 CTTGAAAGAGCAGGACACTTTTTTCTTTTTAAAGCTCACA-TAGGTTGGTGGCACCCTTT
66 CCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGA-GTTGGTGGCACCCTTT
* * * * ** * * **
1320470 AGTCCTCAAAGAGCAGGACGTCTTTTTCCATTCGAAGTGCAAATGAGTTGGTGGCATTCTTTAGT
1 AGTCCTCAAAGAGCAGGATGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGT
* * * **
1320535 TCTCAAAGAGCAGGACG-CTTTTTTCTTTCAAAGCCCAAACGAGTTGGTGGCATTCTTT
66 CCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTT
* * * * *
1320593 TGTCCTCAAAGAGCAGGATGCCTTTTTCTTTTCAAAGCCCACTCGAGTTGGTGGCAGCCTTTAAT
1 AGTCCTCAAAGAGCAGGATGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGT
* * * * * *
1320658 CCTTAAAGAACAGGATGCCTTTTCTCCTTTCAAAACCCACACGAGTTGGTGGTAGCCTTT
66 CCTCAAAGAGCAGGACGCCTTTT-TCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTT
* * * * * *
1320718 AGTCCTCAAAGAGCAAGATGCCTTTTTCCTTTTAAAGCCCACACGGGTCGGTGGCTCCCTTTAGC
1 AGTCCTCAAAGAGCAGGATGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGT
* * * *
1320783 CCTCAAAAAGCAGGACACCTTTTTCCTTTCAAAGCCCACATGAGTTGGT--CACTTCTTTT
66 CCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCAC--CCTTT
* * *** * *
1320842 AG-CACTCAAAAAGTAGGACAACTTTTTCCTTTCAAAGCCCACATGAGTTGGTGGCTCCCTTTAG
1 AGTC-CTCAAAGAGCAGGATGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAG
* * * * * ** **
1320906 ---ACAAAGAGTAGGAC-ACTTTTTTCTTTCAAAGCCCAAACGAGTTCATGGCATTCTTT
65 TCCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTT
* * ** * * ** * * *
1320962 TGTCCTAAAAGAGCAGGACACTTTTTTCTTTTTGAAGCTCACAC-AGGTTAGTGGCACCCATTAG
1 AGTCCTCAAAGAGCAGGATGCCTTTTTCCTTTCAAAGCCCACACGA-GTTGGTGGCACCCTTTAG
* * * *
1321026 TCCTCAAAGAGCAGGATGCCTTTTTCTTTTCAAATCCCACACGAGTTGGTGGCACCCTTC
65 TCCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTT
* * * *
1321086 AGTCCTCAAAGAGCAAGACGCCTTTTTCCTTTCATAGTCCACACGAGTTGGTGGCACCCTTTAGT
1 AGTCCTCAAAGAGCAGGATGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGT
* * *
1321151 CCTCAATGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACG-GTTGGTGGCTCACTTT
66 CCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTT
* * * * *
1321209 AGTCCTTAAAGAGTAAGG-TGCCATTTTCCTTTCAAAGTCCACACG-GCTGGTGGCACCCTTTAG
1 AGTCCTCAAAGAG-CAGGATGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAG
* *
1321272 TCCTCAAAGAGCAGGACACTTTTTTCCTTTCAAAG-CCACCACGAGTTGGTGGCACCCTTT
65 TCCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCA-CACGAGTTGGTGGCACCCTTT
* *
1321332 AGTCCTCAAAGAGCAAGATGCCTTTTTCCTTTCAAAGCCCACACGA-TTGGTGGCACTCTTTAGT
1 AGTCCTCAAAGAGCAGGATGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGT
* * * * * * *
1321396 CCTTAAAGAGCAAGG-CGTCATTTTCCTTTCAAAGACCACACGAGGTGGTGGCACTCTAT
66 CCTCAAAGAGC-AGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTT
* * * ** * * * * * *
1321455 AGTCCTGAAAGAGTATGACACCTCTTTCCCTTCAAAGCCCACGCGGGTTGGTGGTACCTTTTAGT
1 AGTCCTCAAAGAGCAGGATGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGT
* ** * * * * * *
1321520 CCACAAAGAGCAGGACATCTTTTTCTTTTCAAAGCCTAGATGGGTTGGTGGCACCCTTC
66 CCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTT
* * * * *
1321579 AGTCCTCAAAGAGCAGGATGCTTTTTTCCTTTCAAAGCCCACATGAGTTGCTGGTAGCCTTTAGT
1 AGTCCTCAAAGAGCAGGATGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGT
* * * * * *
1321644 CCTCAAATAGCAGGATGCCTTTTTCGTTTCAAAACCCACACGGGTTGGTGGC-CTCAATTT
66 CCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCAC-C-CTTT
* * * ** * * * *
1321704 -GTCCTCCAACAGTAGGACACCTTTTT-CTTTTAGAAGCCCACACGGGTTGGTGGTACCCTGTAG
1 AGTCCTCAAAGAGCAGGATGCCTTTTTCCTTTCA-AAGCCCACACGAGTTGGTGGCACCCTTTAG
* * * * * *
1321767 TCCTCAATGAGTAGGACACCTTTTCCCTTTCAAAGCCCACAGGAGTTTGTGGCACCCTTT
65 TCCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTT
* * ** * ** *
1321827 AGTTCTCAAAAAGCAGGATGCCGCTTTCCTTTCAAAGCCTACGTGAGTTGGTGGCACCCTTCAGT
1 AGTCCTCAAAGAGCAGGATGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGT
*
1321892 CCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGTCCACACGAGTTGGTGGCACCCTTT
66 CCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTT
** ** *
1321951 AGTCCTCAAAGAGCAGGCCGCCTTTTTCCTTTCAAAGCCTGCA-TAGTTGGTGGCACCCTTTAGT
1 AGTCCTCAAAGAGCAGGATGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGT
** * * *
1322015 CCTCAAAGAGCAAAACGCCTTTTTCCTTTCAAAACCCATACGAGTTGGTGGCACCCATT
66 CCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTT
* * ** * *
1322074 AGTCCTTAAAGAGGAGGACACCTTTTTCCTTTCAAAGCCCACACGAGTTGATGGCTCCCTTTAGT
1 AGTCCTCAAAGAGCAGGATGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGT
* * * * * * *
1322139 CTTCTATGTGCAGGACGCCTTTTTCTTTTCAAAGCCCACTCGAGTTGGTGGCAGCCTTT
66 CCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTT
* * * * *
1322198 AATCCTCAAAGAGCAGGATACCTTTTTTCCTTTCAAAACCCACACGTGTTGGTGGCAGCCTTTAG
1 AGTCCTCAAAGAGCAGGATGCC-TTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAG
* ** * * * * *
1322263 TCCTCAAAGAGCAAGTTGCCTTTTTCCTTTTAAGGCCCACACGGGTCGGTGGCTCCCTTT
65 TCCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTT
* * * ** ** *
1322323 -TTCCTTTCAAAGCCCATACGAGTTTATGGCACCCTTTAGTTCTCAAAG---AGCACGA--TGCC
1 AGTCC--TCAAAG---A-GC-AG--GAT-GC-CTTTTTCCTT-TCAAAGCCCA-CACGAGTTG-G
**** * ** * **
1322382 T-TTTTCCTTTCAAAG-CCT-ACACGAGTTGGTGGCAGCCTTCAGTCCTTTCAAAGCCCACACGA
52 TGGCACCCTTT---AGTCCTCA-AAGAG-CAG-GAC-GCCTT-TTTCCTTTCAAAGCCCACACGA
* * *
1322444 GTTGGTCGCTCCTTTT
109 GTTGGTGGCACCCTTT
* * *** * ** *
1322460 AG-CACTCAAAAAGTAGGACAACTTTTTCCTTTCAAAGCCCACAAGAGTTGGTGGGTCCATTTAG
1 AGTC-CTCAAAGAGCAGGATGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAG
* * * * * * ** **
1322524 ---TCAAAGAGTAGGAC-ACTTTTTTCTTTGAAAGCCTAAACGAGTTCATGGCATTCTTT
65 TCCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTT
* * ** * * ** *
1322580 TGTCCTAAAAGAGCAGGACACTTTTTTCTTTTTGAAGCTCACAC-AGGTTGGTGGCACCCTTTAG
1 AGTCCTCAAAGAGCAGGATGCCTTTTTCCTTTCAAAGCCCACACGA-GTTGGTGGCACCCTTTAG
* * * * *
1322644 TCCTCAAAAAGCATGATGCCTTTTTCCTTTCAAAGCCCATACGAGTTTGTGGCACCCTTT
65 TCCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTT
* * * * * * *
1322704 AGTTCTCAAAGAGCATGATGCCTTTTTCCTTTCAAAGCCAACATGAGTTGGTCGCTCCTTTTAG-
1 AGTCCTCAAAGAGCAGGATGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGT
* * *** * *
1322768 CACTCAAAAAGTAGGATAACTTTTTCCTTTCAAAGCCCACGCGAGTTGGTGGCTCCCTTT
66 C-CTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTT
* * * ** ** *
1322828 AG---TCAAAGAGTAGGA--CACTTTTTTCTTTCAAAGCCCAAACGAGTTCATGGCATTCTTTTG
1 AGTCCTCAAAGAGCAGGATGC-CTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAG
* * * * ** * * *
1322888 TCCTAAAAGAGCAGGACACTTTTTTCTTTTTGAAGCTCACAC-AGGTTAGTGGCACCCATT
65 TCCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGA-GTTGGTGGCACCCTTT
* * * *
1322948 AGTCCTCAAAGAGCAGGATGCCTTTTTCTTTTCAAAACCCACGCGAGTTGGTGGCACCCTTCAGT
1 AGTCCTCAAAGAGCAGGATGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGT
* * * *
1323013 CCTCAAAGAGCAAGACGCCGTTTTCCTTTCATAGTCCACACGAGTTGGTGGCACCCTTT
66 CCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTT
* * *
1323072 AGTCCTCAATGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACG-GTTGGTGGCACACTTTAGT
1 AGTCCTCAAAGAGCAGGATGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGT
* * * * *
1323136 CCTTAAAGAGTAAGG-TGCCATTTTCCTTTCAAAGCTCACACGAGTTGGTGGCACCCTTT
66 CCTCAAAGAG-CAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTT
** * *** * * * * *
1323195 AGTCCTGGAAGAGGAGGATATTTTTTTCCTTTCAATGCCGATACGAGTTTGTCGCACCCTTTAGT
1 AGTCCTCAAAGAGCAGGATGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGT
* * * *
1323260 CTTCAAAGAGCAGGATGCCTTTTTCTTTTCAAAGCCCACACGTGTTGGTGGCACCCTTT
66 CCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTT
* *** **
1323319 ATTCCTCAAAGAGCAGGGCACCTTTTTCCTTTCAAAGCCCACACGAGTTTATGGCACCCTTTAGT
1 AGTCCTCAAAGAGCAGGATGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGT
* * * * * * *
1323384 TCTCAAAGAGCATGATGCCCTTTTCCTTTTAAAGCCCACGCGACTTGGTGGCA-CCTTT
66 CCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTT
** *
1323442 CAGTCCTCAAAGAGCAGGACACCTTTTTCCTTTCAAAGTCCACACGAGTTGGTGGCACCCTTTAG
1 -AGTCCTCAAAGAGCAGGATGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAG
* * * * * *
1323507 TCCTTAAAGAGCAAGATGCCTTGTTCCTTTCAAAGCCCACACAAGTTGGTGGCACCTTTT
65 TCCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTT
** * ** * *
1323567 AGTCCTGGAAGAGGAGGACACCTTTTTCCTTTCAAAGCCCACACGAGTTTGTGGCACCCTTTACT
1 AGTCCTCAAAGAGCAGGATGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGT
* * * * * * * * *
1323632 CTTCAAAGAGCTGGACACCTTTTTCTTTTCGAAGCTCACTCGAGTTAGTGTCACCCTTT
66 CCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTT
* * * *
1323691 AGTCCTCAAAGAGCTGGATGCCTTTTTCCTTTCAAAGGCCACCCAAGTTGGTGGCACCCTTTAGT
1 AGTCCTCAAAGAGCAGGATGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGT
* * * * * **
1323756 CCTCAAAGAGTAGTATGCCTTTTTCTTTTCAAAGCCCACACGAGTTGGTGGTATTCTTT
66 CCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTT
* * * *
1323815 TGTCCTCAAAG-TCTAGGATGCCTTTTTCCTTTCAAAGCTCATACGAGTTGGTGGCACCCTTT-G
1 AGTCCTCAAAGAGC-AGGATGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAG
* ** * ** *
1323878 CTCCTCAAAGAGCCGGAAC-CCTTTTTTTTTTCAAAGCCCGCAC-AGATTGGTCACACCATTT
65 -TCCTCAAAGAGCAGG-ACGCCTTTTTCCTTTCAAAGCCCACACGAG-TTGGTGGCACCCTTT
* * ** * * * *
1323939 TGTCCTCAAAGAG-ACGGTTGCCTTTTTATTTTCAAAGCACGCATGATTTGGTGGCACCCTTTAG
1 AGTCCTCAAAGAGCA-GGATGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAG
* *
1324003 TCCTCAAAGAGCAGGACGCCTTTTTCCATTCAAAGCCCACACGAGTTGGTGGCACCTTTT
65 TCCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTT
* * * * * * * * *
1324063 ACTCCTC-AAGAGTCA-GAAGCCTTTTTCTTTTTAAAGCCTATATGGGTTGGTGGCACCCTTTTG
1 AGTCCTCAAAGAG-CAGGATGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAG
* * * * *** * * *
1324126 TCCTTAAATAGTAGCAAATCTTTTTCCTTTCAATGCCCACATGAGTTGGTGGCACTCTTT
65 TCCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTT
* * ** * * * * *
1324186 AGTCCTTAAAGAGTAGGACACCTTTTTCCTTTCGAAGCCCACGCGGGTTGCTGGCACCCTTTAGC
1 AGTCCTCAAAGAGCAGGATGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGT
** * * * * * * *
1324251 CCAAAAAGAGTAGGATGCCTTTTTCTTTTCAAAGCCCAGATGGGTTGGTGGCACCCTTC
66 CCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTT
* * * * *
1324310 AGTCCTCAAAGAGCACGATGCTTTTTTCCTTTCAAAGCCTACACGAGTTGGTGGTAGCCTTTAGT
1 AGTCCTCAAAGAGCAGGATGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGT
* ** * *
1324375 ACTCAAAGAGCAGGATTCCTTTTTCGTTTCAAAACCCACACG-GTTTGGTGGC-CCCAATTT
66 CCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGAG-TTGGTGGCACCC--TTT
* * * ** * * * *
1324435 -GTCCTCCAAGAGTAGGACGCCTTTTTATTTTCAAAGGCCAGATGTGTTGGTGGCACCCTTTAGT
1 AGTCCTCAAAGAGCAGGATGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGT
*
1324499 CCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTTGTGGCACCCTTT
66 CCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTT
* ** * *
1324558 AGTTCTCAAAGAGCATAATGCCTTTTTCCTTTCAAAGCCCACGCAAGTTGGTGGCACCCTTTAGT
1 AGTCCTCAAAGAGCAGGATGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGT
* * **
1324623 CCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGTCCACATGAGTTGGTGGTGCCCTTT
66 CCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTT
* * *
1324682 AGTCCTCAAAGAGCAGGACGCTTTTTTCCCTTT-AAAG-CCACCACGAGTTGGTGGCAGCCTTTA
1 AGTCCTCAAAGAGCAGGATGCCTTTTT-CCTTTCAAAGCCCA-CACGAGTTGGTGGCACCCTTTA
* * * * ** **
1324745 GTTCTCAAAGAGTAGGACGCCTATTTCTTTTCAAAGCCCACACGAGTTTTTGGCAATCTTT
64 GTCCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTT
* * * * * * *
1324806 ACTTCTCAAAGAGCAGGATGCCTTTTTCGTTTCAAAACCCACACGGGTTGGTGGC-CTCATTTTG
1 AGTCCTCAAAGAGCAGGATGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCAC-CCTTTAG
* * * * * * *
1324870 TCCTTAAAGAGTAGGACACCTTTTTCTTTTCAAAGCCCACAAGTGTTAGTGGCACCCTTT
65 TCCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTT
* * * * * * * * *
1324930 AGTCCTCAATGAGCAGGACGCCCTTTTCCTTTTAAAGCTCATACGTGTTTGTGGCACCCTTTAAT
1 AGTCCTCAAAGAGCAGGATGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGT
* * * *
1324995 TCTCAAAGAGCAGGATGCCTTTTTCCTTTCAAAGCCCACGCGAGTTGGTGGCACCCTTC
66 CCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTT
* * * *
1325054 AGTCCTCAAAGAGAAGGACGCCTTTTTCCTTTCAAAG-GCACACGAGTTGGTAGCACCCTTTAGT
1 AGTCCTCAAAGAGCAGGATGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGT
* * * * * * *
1325118 CTTCGAAGAGTAGGATGCCTTTGTCCTTTCAAAGCCCACACGAGTTTGTGGCACCTTTT
66 CCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTT
* * * ** *
1325177 AGTCCTCGAAGTGAAGGACACCTTTTTCCTTTCAAAGCCCACACAAGTTGGTGGCACCCTTTAGT
1 AGTCCTCAAAGAGCAGGATGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGT
* * * * *
1325242 CTTCAAAGAGCAGGACACCTTTTTCTTTTCAAAGCCCACTCGAGTTGGTGGCACCTTTT
66 CCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTT
* **
1325301 AGTCCTCAAAGAGCAGG-TCGTCTTTTTCCTTTCAAAGCCCACGTGAGTTGGT--CACTCTCTTT
1 AGTCCTCAAAGAGCAGGAT-GCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCAC-C-CTTT
* * * * *
1325363 AGCCCTCATAGAGTAGGACACCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCTCCCTTT
63 AGTCCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTT
* * * * * *
1325425 AGTCCTCAAAGCGTAAGATG-CTTTTTTCTTTCAAAGCCCACACGTGGTTGGTGGCACCTTTTAG
1 AGTCCTCAAAGAGCAGGATGCCTTTTTCCTTTCAAAGCCCACACG-AGTTGGTGGCACCCTTTAG
* * *
1325489 TACTTAAAGAGCAAGG-CGCCATTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTT
65 TCCTCAAAGAGC-AGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTT
* * ** * ** * * * * *
1325549 AATGCTGGAAGAGGAGGACACCTATTTCCTTTCAAAGCCCGCACGAGTTTGTCGCACCTTTTAGT
1 AGTCCTCAAAGAGCAGGATGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGT
* * * * **
1325614 CTTCAAAGAGTAGGATGCCTTTTTCTTTTCAAAGCCCACTTGAGTTGGTGGCACCCTTT
66 CCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTT
* * * * *
1325673 AGTCCTCAAAGAGCAAGATG-TTTTCTTCCATTT-AATG-CCACCACGAGTTGGTGGTAGCCTTT
1 AGTCCTCAAAGAGCAGGATGCCTTT-TTCC-TTTCAAAGCCCA-CACGAGTTGGTGGCACCCTTT
* * * * * ** *
1325735 AGTTCTTAAAGAGTAGGACGCCTATTTCTTTTCAAAGCCCACACGAGTTTCTGGCAACCTTT
63 AGTCCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTT
* * * * * * * *
1325797 ACTTCTCAAAGAGCAAGATGCCTTTTTCGTTTCAAAACCCACACGGGTTGGTGGC-CTCATTTTG
1 AGTCCTCAAAGAGCAGGATGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCAC-CCTTTAG
* * * * * *
1325861 TCCTAAAAGAGTAGGACACCTTTTTCTTTTCAAAGCCCACAAGTGTTGGTGGCACCCTTT
65 TCCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTT
* ** * * * *
1325921 AGTCCTCAATGAGCAGGACACCTTTTTCCTTTCAAAGCTCATACGTGTTTGTGGCACCCTTTAGT
1 AGTCCTCAAAGAGCAGGATGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGT
* * * *
1325986 TCTCAAAGAGCAGGATGCCTTTTTCCTTTCAAAGCCCACGCGAGTTGGTGGCACCCTTC
66 CCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTT
1326045 AGTCCTCAAAGAGCAGGATGCCTTTTTCCTTTCAAAG-CCACACGAGTTGGTGGCACCCTTTAGT
1 AGTCCTCAAAGAGCAGGATGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGT
* * * * * * *
1326109 CTTCGAAGAGTA-GATGCCTTTGTCCTTTCAAAGCCCACACGAGTTTGTGGCACCTTTT
66 CCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTT
* * * ** *
1326167 AGTCCTCGAAGTGAAGGACACCTTTTTCCTTTCAAAGCCCACACAAGTTGGTGGCACCCTTTAGT
1 AGTCCTCAAAGAGCAGGATGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGT
* * * * *
1326232 CTTCAAAGAGCAGGACACCTTTTTCTTTTCAAAGCCCACTCGAGTTGGTGGCACCTTTT
66 CCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTT
* * * * * * *
1326291 AGTCCTCAAAGAGCAGG-TCGTCTTTTTCCTTTCAATGCCCACGCGAGTTCGTCGCTCTCTTTAG
1 AGTCCTCAAAGAGCAGGAT-GCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAG
* * * * * *
1326355 CCCTCATAGAGTAGGACACCTTTTTCCTTTCAAAGCCCACACGACTTGGTGGCTCCCTTT
65 TCCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTT
* * * * *** ** *
1326415 AGTCTTCAAAGCGCAGGATG-CTTTTTTCTTTCAAAGCCCAAACGAGTTGACAGCATTCTTTTGT
1 AGTCCTCAAAGAGCAGGATGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGT
* * *** * * * *
1326479 CTTGAAAGAGCAGGACATTTTTTTCTTTTTAAAGCTCACA-TAGGTTGGTGGCACCCTTT
66 CCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGA-GTTGGTGGCACCCTTT
* * * * ** * **
1326538 AGTCCTCAAAGAGCAGGACGTCTTTTTCCATTCGAAGTGCAAACGAGTTGGTGGCATTCTTTAGT
1 AGTCCTCAAAGAGCAGGATGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGT
* * * **
1326603 TCTCAAAGAGCAGGACG-CTTTTTTCTTTCAAAGCCCAAACGAGTTGGTGGCATTCTTT
66 CCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTT
* * * *
1326661 TGTCCTCAAAGAGCAGGATGCCTTTTTCCTTTCAAAGCCCGCACGAGTCGGTGGCTCCCTTTAG-
1 AGTCCTCAAAGAGCAGGATGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGT
* * * *
1326725 CTCTCAAAAAGCTAGG-CACCTTTTTCCTTTCAAAGCCCACACGAGTTGGTCGCTCCCTTT
66 C-CTCAAAGAGC-AGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTT
* * ** * * *
1326785 AGCCCTCAAAAAGCAGGACACCTTTTTTCTTTCAATGCCCACACGAGTTGGTAGTC-CCCTTTAG
1 AGTCCTCAAAGAGCAGGATGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGT-GGCACCCTTTAG
* * * **
1326849 TCCTCAAAGAGCAGGATGCCTTTTTCCTTTCAAAGCGCAAACGAGTTGGTGGCAATCTTT
65 TCCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTT
* * ** * * ***
1326909 AGTCCTCAAAGAGCAGGACG-CTTTTT--TTTTAAAGCTGAAATGAGTTGGTGGCATTTTTTAGT
1 AGTCCTCAAAGAGCAGGATGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGT
* * * * * *
1326971 CCTCAAAGAGTAGGATGCTTTTTTCCTTTTAAA-CCTCATACG-GATTGGTAGCACCCTTT
66 CCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCC-CACACGAG-TTGGTGGCACCCTTT
* * * * * * *
1327030 AGTCCTTAATGAGTAGGACGCATTTTT-TTTTCAAAGCCCACCCGAGTTGGTGGCACCCTTTAGT
1 AGTCCTCAAAGAGCAGGATGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGT
* * * * * * * ** *
1327094 CCTTAAAAAGTAGGATGTCTTTTTCGTTTCAAAGCCCACACAAGTTGGTGGTGCCATTT
66 CCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTT
* * * ** * ** *
1327153 TGTTCTCAAAGAGCAAGACACCTTTTTCTTTTCAAAGCCCACAC--G-TGGTGGCACTATGTAGT
1 AGTCCTCAAAGAGCAGGATGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGT
* *** *
1327215 CCTCAATGAGCAGGACATTTTTTTCCTTTCAAAGCCCACACGAGTTTGTGGCACCCTTT
66 CCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTT
* * * * * * *
1327274 AGTTCTTAAAGAGCAGGATGCCGTTTTCCCTTCAAAGCCCACGCGAGTTGGTGGCATCCTTCAGT
1 AGTCCTCAAAGAGCAGGATGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGT
* * *
1327339 CCTCAAAGAGCAGGATGCCATTTTCCTTTCAAAGCCCACACGAGTTAGTGGCACCCTTT
66 CCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTT
** * *
1327398 AGTCCTCAAAGAGTGGGTTGCCTTTTTCATTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGT
1 AGTCCTCAAAGAGCAGGATGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGT
** ** **
1327463 CCTCAAAGAGTGGGTTGCCTTTTTCAATTCAAAGCCCACACGAGTTGGTGGCACCCTTT
66 CCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTT
* * * * ** *** *
1327522 AGTCCTCAAAGAGCAGGATG-CTTTTTTCTTTCGATGCCCAAACGAGTTGACGGCATTTTTTTGT
1 AGTCCTCAAAGAGCAGGATGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGT
* * * * * * **
1327586 CTTGAAAGAGCAGGACACTTTTTTCTTTTTAAAGCTTACAC-AGGTTGGTGGCACCCTTT
66 CCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGA-GTTGGTGGCACCCTTT
* * * * * ** * **
1327645 AGTCCTCAAAGCGCAGGACGTCTTTTTCCATTCGAAGTGCAAACGAGTTGGTGGCATTCTTTAGT
1 AGTCCTCAAAGAGCAGGATGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGT
* * ** *
1327710 CCTCAAAAAGCAGGATG-CTTTTTCCTTTCAAAGCCCACACGAGTTGGCCGC-TCCTTT
66 CCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTT
* * * ** * *
1327767 AGCCCTCAATGAGTAGGACACCTTTTTCCTTTCAAAGCCCACACGACTTGGTGGCTCCCTTTAGT
1 AGTCCTCAAAGAGCAGGATGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGT
* * * * * ** **
1327832 CTTCAAAGAGCAGGATG-CTTTTTTCTTTGAAAGCCCAAACGAGTTGACGGCATTCTTT
66 CCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTT
* * * ** * * * * *
1327890 TGTCTTGAAAGAGCAGGACACTTTTTTCTTTTTAAAGCTCACA-TAGGTTGGTGGCACCCTTTAG
1 AGTCCTCAAAGAGCAGGATGCCTTTTTCCTTTCAAAGCCCACACGA-GTTGGTGGCACCCTTTAG
* * * ** * ** *
1327954 TCCTCAAAGAGCAGGACGTCTTTTTCCATTCGAAGTGCAAACGAGTTGGTGGCATTCATT
65 TCCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTT
* * * * * ** *
1328014 AGTCCTCAAAGAGCAGGACG-CTTTTTTCTTTCAAAGTCCAAACGAGTTGGTGGTATTCTTTTGT
1 AGTCCTCAAAGAGCAGGATGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGT
* * * * * * *
1328078 CCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCGCATGGGTCGATGGCACCATGT
66 CCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTT
* * *
1328137 AGTCCTCAATGAGCAGG-T-CATCTTTTTCCTTTGAAAGCCCACACGAGTTTGTGGCACCCTTTA
1 AGTCCTCAAAGAGCAGGATGC--CTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTA
* * * *
1328200 GTTCTTAAAGAGCAGGATGCCTTTTTCCTTTCAAAGCCCACACGAGTTAGTGGCACCCTTT
64 GTCCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTT
** *
1328261 AGTCCTCAAAGAGTGGGATGCCTTTTTCATTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGT
1 AGTCCTCAAAGAGCAGGATGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGT
* * * * * * * * * **
1328326 CCTCAAAGAGTAGGACGTCTTATGCCATTCAAAGCGCAAATGATTTGGTGGCATTCTTT
66 CCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTT
** * * * * ** *
1328385 AGTCCTCAAAGAGCAGGA--CACTTTTTTTTTTCAAAGCCCAAATGAGTTAGCGGCATTCTTTTG
1 AGTCCTCAAAGAGCAGGATGC-CTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAG
* *
1328448 TCCTCAAAGA-CTAGGATGCCTTTTTCCTTTCAAAGCCCACACGAGCTGGTGGCACCCTTT
65 TCCTCAAAGAGC-AGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTT
* * * * * * * * * *
1328508 ACTCTTCAAAGCGCCGGAAGCCTTTTTCTTTTCAAAGCTTGCACA-G-GTTGGTGGCGCCATTTT
1 AGTCCTCAAAGAGCAGGATGCCTTTTTCCTTTCAAAGC--CCACACGAGTTGGTGGCACCCTTTA
* * * * *
1328571 GTCCTCAAAGAG-AGGGACACCTTTTTCTTTTCAAAGCCCACGCGAGTTGGTGGCACACTAT
64 GTCCTCAAAGAGCA-GGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTT
* * **
1328632 AGTCCTCAAAGAGCAGGACGCATTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTACC
1 AGTCCTCAAAGAGCAGGATGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGT
* * * * *
1328697 CCTCAAAGAGCCA-GAAGCCTTTTTCTTTTCAAAGCCCACATGGGTTGGTGGAACCCTTT
66 CCTCAAAGAG-CAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTT
* * * *** * * * *
1328756 TGTCCTTAAAGAGTAGGACATCTTTTTCCTTTCAATGCCCACACGAGTTGGTAGCACTCTTTATT
1 AGTCCTCAAAGAGCAGGATGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGT
* * * ** *
1328821 GCTCAAAGAGTAGGACACCTTTTTCCTTTCAAAAACCACACGGGTTGGTGGCACCCTTT
66 CCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTT
* * * * * * * * * *
1328880 AGTTCACAAAGAGCAAGATGCCTTTTTCTTTTCAAAGCCTAGATGGGTTGGTAGCACCCTTCAGT
1 AGTCCTCAAAGAGCAGGATGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGT
* * * * *
1328945 CCTCAAAGAGCAGAATGCTTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGTAGCCTTT
66 CCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTT
* * * * * * * *
1329004 AGTCCTCAAAGAGTAGGATGCCCTTTTCGTTTCAAAACCCACATGGGTTGATGGC-CTCAATTT-
1 AGTCCTCAAAGAGCAGGATGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCAC-C-CTTTA
* * * * * *
1329067 GTCCTCCAAGAGTAGGATC-CATTTTTCTTTTCAAAGCCTACACGTGTTGGTGGCACCCTTT
64 GTCCTCAAAGAGCAGGA-CGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTT
* *
1329128 AGTCCACAAAGAGCAGGATGCCTTTTTCCTTTCAAAGCCCACACGAGTTTGTGGCACCCTTTAGT
1 AGTCCTCAAAGAGCAGGATGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGT
* * * * * *
1329193 TCTTAAAGAGCACGATGCCTTTTTCCTTTCAAAGCCCACGCGAGTTGGTGGCACCCTTC
66 CCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTT
* * * * * *
1329252 AGTCCTCAAAGAGTAGG-TCACCTTTTTCCTTTCAAAGTCCACATGAGTTGATGTCACCCTTTAG
1 AGTCCTCAAAGAGCAGGAT-GCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAG
* *
1329316 TCCTCAAAGAGCAGGATGCCTTTTTCCTTTTAAAGCCCACACG-GTTGGTGGCACCCCTTT
65 TCCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCA-CCCTTT
* *
1329376 AGTCCTTAAAGAGCAAGGCA--CCATTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTA
1 AGTCCTCAAAGAGC-AGG-ATGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTA
** * * * *
1329439 GTCCTGGAAGAGGAGGACACCTTTTTTCCTTTCAAAGTCCACACGAGTTTGTGGCACCCTTT
64 GTCCTCAAAGAGCAGGACGCC-TTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTT
* * * * *
1329501 AGTCTTCAAAGAGTAGGATGCCTTTTTCTTTTCAAAGCCCACTCGAGTTGGTAGCACCCTTTAGT
1 AGTCCTCAAAGAGCAGGATGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGT
*
1329566 CCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAG-CCACCACGAGTTGGTGGCAGCCTTT
66 CCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCA-CACGAGTTGGTGGCACCCTTT
* * * * * * *
1329625 AGTTCTCAAAGAGTAGGAAGCCTTTTTCTTTTCAAAGCCCGCACAAGTTTGTGGCACCCTTTAGT
1 AGTCCTCAAAGAGCAGGATGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGT
* * * * * *
1329690 TCTCGAAGAGCAGGATGCCTTTTTCGTTTCAAAACCCACACGAGTTGGTGGC-CTCATTT
66 CCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCAC-CCTTT
* ** ** * * * * *
1329749 TGTCCTCAAAGAATAGGACACTTTTTTCTTTTCAAAGCCCAAAAGTGTTGGTGGCACCCTTTAGT
1 AGTCCTCAAAGAGCAGGATGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGT
* * * * * * *
1329814 CCTCAATGAGCAGGACGTCTTTTTCCTTTCAAAGCTCATACGTGTTTGTGGTACCCTTT
66 CCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTT
* * * * *
1329873 AGTTCTCAAAGAGCACGATGCCTTTTTCCTTTCAAAGCCCACGCTAGTTGGTGGCACCCTTCAGT
1 AGTCCTCAAAGAGCAGGATGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGT
* * * *
1329938 CCTCAAAGAGTAGGACACCTTTTTCCTTTCAAAGCCGACACGAGTTGGTGGCACCCTAT
66 CCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTT
* * * *
1329997 AGTCTTCAAAGAGTAGGATGCCTTTGTGCTTTCAAAGCCCACACGAGTTGGTGGCA-CCTTTAGT
1 AGTCCTCAAAGAGCAGGATGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGT
* * * *
1330061 CCTCGAAGTGAAGGACACCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTT
66 CCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTT
* ** * **
1330120 AGTCTTCAAAGAGCAGGACACTTTTTTCCTTTCAAAGCCCACACGAGTTAATGGCACCCTTTAGT
1 AGTCCTCAAAGAGCAGGATGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGT
* * * * ** *
1330185 CCTCAAAGAGCAAGATGCCTTTTTCCTTTCAAAGCCCACGCGAGTTGGTCGTTCTCTTT
66 CCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTT
* * ** **
1330244 AGCCCTCAATGAATAGGACACCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGT
1 AGTCCTCAAAGAGCAGGATGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGT
* * * * **
1330309 CTTCAAAGAGCAGGACACTTTTTTCTTTTCAAAGCCCACACGAGTTAATGGCACCCTTT
66 CCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTT
* * * ** * *
1330368 AGTCCTCAAAGAGCAAGATGCCTTTTTCCTTTCAAAGCCCACGCGAGTTGGTCGTTCTCTTTAGC
1 AGTCCTCAAAGAGCAGGATGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGT
* ** * * * * **
1330433 CCTCAATGAATAGGACACCTTTTTCCTTTCAAAGCCCATACCACTTGGTGGTTCCCTTT
66 CCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTT
* * * ** ** *
1330492 AGTCCTCAAAGAGTAGGATG-CTTTTTTCTTTCAAAGCCCAAACGAGTTGACGGCATTCTTTTGT
1 AGTCCTCAAAGAGCAGGATGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGT
* * * * * * ** *
1330556 CTTGAAAGAGCAGGACACTTTTTTCTTTTTAAAGCTTACA-TAGGTTGGTGGCACCCTTT
66 CCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGA-GTTGGTGGCACCCTTT
* *** * * ** * ***
1330615 AGTCCTCAAAGAGTAGGACAACTTTTTCCATTCGAAGTGCAAACGAGTTGGTGGCATTATTTAGT
1 AGTCCTCAAAGAGCAGGATGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGT
* * * * * **
1330680 CCTCAAAGAGCAGGAC-ACTTTTTTCTTTCAAAGGCCAAACGAGTTGGTGGTATTCTTT
66 CCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTT
* ** ** * * *
1330738 TGTCCTCAAAGATTAGGACACCTTTTT-CTTTTAATAACCCACACGTGTTGGTGGCACCCTATT-
1 AGTCCTCAAAGAGCAGGATGCCTTTTTCCTTTCAA-AGCCCACACGAGTTGGTGGCACCCT-TTA
* * * * * * *
1330801 GTCCTTAATGAGTAGGACACTTTTTTCCTTTCAAAGCCCCCACGAGTTTGTGGCACCCTTT
64 GTCCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTT
* * * *
1330862 AGTTCTCAAAGAGCAGGATGCCATTTTCCTTTCAAAGCCCACGCGAGTTGGTGGCACCCTTCAGT
1 AGTCCTCAAAGAGCAGGATGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGT
* * *
1330927 CCTCAAAGAGCAAGACGCCTTTTTCCTTTCAATGCCCACAAGAGTTGGTGGCACCCTTT
66 CCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTT
** * * * * *
1330986 AGTTATCAAACAGCAGGACGCCTTTTTCCTTTCAAAGCCCGCA-TAGTT-GTAGCACCCTTTAGT
1 AGTCCTCAAAGAGCAGGATGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGT
* * * * * * *
1331049 CCTCAAAGAGCAAGATGTCTTTTTCATTTCAAAACCCACATGAGTTGGTGGCACCCATT
66 CCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTT
** * ** * *
1331108 AGTCCTTGAAGAGGAGGACACCTTTTTCCTTTCAAAGCCCACACGAGTTAGTGGCTCCCTTTAGT
1 AGTCCTCAAAGAGCAGGATGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGT
* * ** * * * * *
1331173 CTTCCAAGAGCAAAACACCTTTTT-CTTTCCAAAGCCCACTCGAGTCGATGGCAACCTTT
66 CCTCAAAGAGCAGGACGCCTTTTTCCTTT-CAAAGCCCACACGAGTTGGTGGCACCCTTT
* * * *
1331232 AATCCTCAAGGAGCAGGATGCCTCTTTTCCTTTCAAAGCCCACACGAGTTGGTGGTAGCCTTTAG
1 AGTCCTCAAAGAGCAGGATGCCT-TTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAG
* * * * * * * * *
1331297 TCCTCAAAAAGGAAGATGCCTTTTTCCTTTTAAAGCCCACACGGGTCGGTGGCTCACTTT
65 TCCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTT
* * * ** * * * * * *
1331357 AGCCCTCAAAAAGTAGGACACCTTTTTCCTTTCAAAGCCGACACGATTTGGTCGCTCCTTTTAGC
1 AGTCCTCAAAGAGCAGGATGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGT
* * * *
1331422 CCTCAAAAAGTAGGACACCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCTCCCTTT
66 CCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTT
* * * * ** ** *
1331481 AGTCCTCAAAGAGTAGGA--CATTTTTTTCTTTCAAAGCCCAAACGAGTTCATGGCATTCTTTTG
1 AGTCCTCAAAGAGCAGGATGC-CTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAG
* ** * *
1331544 TCCTAAAAGAGCAGGAC-AATTTTTTCTTTCTAAAGCTCAC-C-AGGTTGGTGGCACCCTTT
65 TCCTCAAAGAGCAGGACGCCTTTTTCCTTTC-AAAGCCCACACGA-GTTGGTGGCACCCTTT
* *
1331603 AGTCCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTTGTGGCACCCTTTAGT
1 AGTCCTCAAAGAGCAGGATGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGT
* * * ** * *
1331668 TCTCAAAGAGCACGATGCCTTTTTCCTTTCAAAGCCCACGTGAGTCGGTGGCACCCTTC
66 CCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTT
* * *
1331727 AGTCCTCAAAGACCAAGATGCCTTTTTCCTTTCAAAGTCCACACGAGTTGGTGGCACCCTTTAGT
1 AGTCCTCAAAGAGCAGGATGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGT
* * * *
1331792 CTTCAAAGAGCAGGATGCCTTTTTCGTTTCAAAGCCCACATG-GTTGGTGGCACCCTTT
66 CCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTT
* * *
1331850 AGTCCTTAAAGAGCATGGCA--CCATTTTCCTTTCAAAGCCCACACGAGTTGATGGCACCCTTTA
1 AGTCCTCAAAGAGCA-GG-ATGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTA
*** * * * * *
1331913 GTCCGGGAAGAGGAGGACACTTTTTTCCTTTCAAAGCCCACACGAGTTTGTAGCACCCTTT
64 GTCCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTT
* * * * * * *
1331974 AGTCTTCAAAGTGTAGGATGCCTTTTTCTTTTCAAAGCCCACATGAGTTTGTGGCACACTTTAGT
1 AGTCCTCAAAGAGCAGGATGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGT
* * * * * **** *
1332039 TCTCAAAGAGCAGGATC-CCTTTTTCGTTTCAAAACCCACATGGGTTGGTGTTTTCATTT
66 CCTCAAAGAGCAGGA-CGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTT
* * ** ** * *
1332098 TGTCCTCAAAGAGTAGGACACCTTTTTTTTTTCAAAGCCCACAAGTA-TTGGTGGCACCTTTTAG
1 AGTCCTCAAAGAGCAGGATGCCTTTTTCCTTTCAAAGCCCACACG-AGTTGGTGGCACCCTTTAG
* * * * * * ** *
1332162 TCCTCAATGAGCAGGACGCCTTTCTCCCTTCAAAGCTCATACGTGTTTATGGCACCCTTA
65 TCCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTT
* * * * *
1332222 AGTTCTCAAAGAGCAGGATGCTTTTTTCCTTTCAAAGCCCACGCAAGTTGGTGGCACCCTTCAGT
1 AGTCCTCAAAGAGCAGGATGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGT
* * * *
1332287 CCTCAAAGAGCAGGACGTCTTTTTCCTTTCAAAGCCCACGCAAGTTGGTGGCACCCTTC
66 CCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTT
* *
1332346 AGTCCTCAAAGAGCAGGACGGCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGT
1 AGTCCTCAAAGAGCAGGATGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGT
* * * * * *
1332411 CTTCAAGGAGTAGGATGCCTTTGTCCTTTCAAAGCCCACATGAGTTGGTGGCA-CCTTT
66 CCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTT
* * * ** * * * * *
1332469 AGTCCTCGAAGTGAAGGACACCTTTTTCCTTTGAAAGCCCACACGCGTCGATGGCACCTTTTAG-
1 AGTCCTCAAAGAGCAGGATGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGT
* * * * *
1332533 CCTTCAATGAGCATGACACCTTTTTCTTTTCAAAGCCCACTCGAGTTGGTGGCACCCTTT
66 CC-TCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTT
* * * * * * *
1332593 AGTCCTCAAAGAGCAGGACGCCTTTTTTCTTTCAAAGCCCACGCGAGTTGGTCGCTCTCTTTAGC
1 AGTCCTCAAAGAGCAGGATGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGT
* * * *
1332658 CCTCAAAGAGTAGGACACCTTTTTCCATTCAAAGCCCACACGAGTTGGTGGCTCCCTTT
66 CCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTT
* * * * ** ** *
1332717 AATCCTCAAAGTGCAGGATG-CTTTTTTCTTTCAAAGCCCAAACGAGTTGACGGCATTCTTTTGT
1 AGTCCTCAAAGAGCAGGATGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGT
* * * * * * * * * *
1332781 CTTGAAAAAGCATGACACTTTTTTCTTTTTAAAGCTCACAC-AGGTTGGGGGCACCCTTT
66 CCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGA-GTTGGTGGCACCCTTT
* * * ** * **
1332840 AGTCCTCAAAGAGCAGGACGTCTTTTTCCATTCAAAGTGCAAACGAGTTGGTGGCATTCTTTAGT
1 AGTCCTCAAAGAGCAGGATGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGT
* * * **
1332905 CCTCAAAGAGCAGGACG-CTTTTTTCTTTCAAAGCCCAAACGAGTTGGTGGTATTCTTCT
66 CCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTT-T
* * ** * * * * * *
1332964 -GTCCTCAAAGAGAAAGACACCTTTTTCCTTTCAAAGCTCGCATGGGTCGGTGGCTCCCTTTAG-
1 AGTCCTCAAAGAGCAGGATGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGT
* * * * * ** *
1333027 CTCTTAAAAAGCAGGGCACCTTTTTCGTTTCAAAGCCCACACGAGTTGGTCTCTCCCTTT
66 C-CTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTT
* ** * * * *
1333087 AGCCCTCAAAGAGCAGGACACCTTTTTCCTTTCAATGCCCACACAACTTGGTGGCCCCCTTTAGT
1 AGTCCTCAAAGAGCAGGATGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGT
* * ** * *
1333152 CCTTAAAGAGTAGGACATCTTTTTCCTTTCAATGCCCACACGAGTTGGTGGCA--CTCT
66 CCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTT
* ** *
1333209 --TCCTCAAAGAGTAGGACACCTTTTTCCTTTCAAAGCCCACACGGGTTGGTGGCACCCTTTAG-
1 AGTCCTCAAAGAGCAGGATGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGT
* * *** * * *
1333271 --TC------C---A----TATTTCTTTTCAAAGCCTGGATGGGTTGGTGGCACCCTTC
66 CCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTT
* * * * * *
1333315 AGTCCTCAAAAAGCAGAATGCTTTTTTCCTTTCAAAGCCCACATGAGTTGGTGGCAGCCTTCAGT
1 AGTCCTCAAAGAGCAGGATGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGT
* * * * * * * *
1333380 CCTCAAAGAGTAGGATGCC-TTTTCCGTTTCAAAACCCATATGGGTGGGTGGC-CTCAATTT
66 CCTCAAAGAGCAGGACGCCTTTTTCC-TTTCAAAGCCCACACGAGTTGGTGGCAC-C-CTTT
* * * * * *
1333440 -CTCCTCCAAGAGTAGGACT-CCTTTTTCCTTTCAAAGCCCATACGTGTCGGTGGCACCCTTTAG
1 AGTCCTCAAAGAGCAGGA-TGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAG
* * *
1333503 TCCACAAAGAGCAGGATGCCTTTTTCCTTTCAAAGCCCACACGAGTTTGTGGCACCCTTT
65 TCCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTT
* ** * * * * * *
1333563 AGTTCTCAAAGAGCACAATGCCTTTCTCCTTTCAAAGGCCACGCAAGTTGGTGGTACCCTTCAGT
1 AGTCCTCAAAGAGCAGGATGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGT
* * * *
1333628 CCTCAAAGAGCAGAATGCTTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCAGCCTTT
66 CCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTT
* * * *
1333687 AGTCCTCAAAGAGCAGGATGCCTTTTTCATTTCAAAACCCACA-TAGGTTGGTGGC-CTCAATTT
1 AGTCCTCAAAGAGCAGGATGCCTTTTTCCTTTCAAAGCCCACACGA-GTTGGTGGCAC-C-CTTT
* * * *
1333750 -GTCCTCCAAGAGTAGGATGCCTTTTTCTTTTCAAAGCCCACAC-ATGTTGGTGGCACCCTTT
63 AGTCCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGA-GTTGGTGGCACCCTTT
* *
1333811 AGTCCAT-AAAGAGCAGGATGCCTTTTTCCTTTCAAAGCCCATACGAGTTTGTGGCACCCTTTAG
1 AGTCC-TCAAAGAGCAGGATGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAG
* ** * *
1333875 TTCTCAAAGAGCACTATGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGCCACCCTTT
65 TCCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTT
* * * *
1333935 AGTCCTCAAAGAGCAGGACGCCTGTTTCCTTTCAAAGTCCACACGAGTTGATGGCACCCTTTAGT
1 AGTCCTCAAAGAGCAGGATGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGT
* * *
1334000 CCTCAAAAAGCAGGATGCCTTTTTCCTTTCCAAGCCCACACG-GTTGGTGGCACCCTTT
66 CCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTT
* * *
1334058 AGTCCTTAAAGAGCAAGGCGTG--ATTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTA
1 AGTCCTCAAAGAGC-AGG-ATGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTA
** * * * *
1334121 GTCCTGGAAGAGGAGGACACATTTTTTTCCTTTCAAAGCCCACACGAGTTTGTGGCACCCTTT
64 GTCCTCAAAGAGCAGGACGC--CTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTT
* * * * * *
1334184 AGTCTTCAAAGAGTAGGATGCCTTTTTCTTTTCAAAGCCCACTCTAGTTGGTGGCACCTTTTAGT
1 AGTCCTCAAAGAGCAGGATGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGT
*
1334249 CCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAG-CCACCACGAGTTGGTGGCAGCCTTT
66 CCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCA-CACGAGTTGGTGGCACCCTTT
* * * * * *
1334308 AGTTCTCAAAGAGTAGGAAG-CTTGTT--TTTCAAAGCTCACACGAGTTTGTGGCACCCTTTAGT
1 AGTCCTCAAAGAGCAGGATGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGT
* * * * * ** *
1334370 TCTCAAAGAGCAGGATGCCTTCTTCGTTTCAAAACCCGTACGGGTTGGTGGC-CCCATTT
66 CCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCC-TTT
* * ** * * * *
1334429 TGTCCTCAAAGAGTAGGACACCTTTTTCTTTTCAAAGCCCACAAGTGTTGGTGGCACCCTTTTGT
1 AGTCCTCAAAGAGCAGGATGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGT
* * * * * * *
1334494 CCTCAATGAGCAGGACGCCTTTTTCCTTTCAAAGCTCATATGTGTTTGTGGTACCCTTT
66 CCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTT
* * * * * *
1334553 TGTTCTCAAAGAGCAAGATGCATTTTTCCTTTCAAAGCCCACGCGAGTTGGTGGCACCCTTCAGT
1 AGTCCTCAAAGAGCAGGATGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGT
* *
1334618 CCTCAAAGAGTAGGACACCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTT
66 CCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTT
* * * ** * *
1334677 AGTCCTCGAAGTGAAGGACACCTTTTTCCTTTGAAAGCCCACATGAGTTGGTGGCACCCTTTAGT
1 AGTCCTCAAAGAGCAGGATGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGT
* * * * **
1334742 CTTCAAAGAGCAGGACACTTTTTTCTTTTCAAAGCCCACACGAGTTAATGGCACCCTTT
66 CCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTT
* * ** * * * * *
1334801 AGTCCTCAAAGAGCAAGATGCTTTTTTCCTTTCAAAGCTTACGCGAGTTGGTCGCTCTCTTTAGC
1 AGTCCTCAAAGAGCAGGATGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGT
* * * *
1334866 CCTCAATGAGTAGGACACCTTTTTCCTTTCAAAGCCCACACGAGTTTGTGGCACCCTTT
66 CCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTT
* * * *
1334925 AGTTCTCAAAGAGCAGGATGTCGTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTCAGT
1 AGTCCTCAAAGAGCAGGATGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGT
* * *
1334990 CCTCAAAGAGCAGGACCCCTTTTTCCTTTCAATGCCCACAAGAGTTGGTGGCACCCTTT
66 CCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTT
* * * * *
1335049 AGTTCTCAAATAGCAGGACGCCTTTTTCCTTTCAAAGCCCGCA-TAGTT-GTGGCACCCTTTAGT
1 AGTCCTCAAAGAGCAGGATGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGT
** * * * *
1335112 CCTCAAAGAGCAAAATGCCTTTTTCATTTCAAAACCCACACGAGTTGGTGGCACCCATT
66 CCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTT
** * ** *
1335171 AGTCCTTGAAGAGGAGGACACCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCTCCCTTTAGT
1 AGTCCTCAAAGAGCAGGATGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGT
* * * * *
1335236 CTTCCAAGAGCAGGACGCCTTTTTCTTTTCAAAGCCTACTA-GAGTTGGTGGCAGCCTTT
66 CCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCAC-ACGAGTTGGTGGCACCCTTT
* *
1335295 AATCCTCAAGGAGCAGGATGCCTTTTTTCCTTTCAAAGCCCAC
1 AGTCCTCAAAGAGCAGGATGCC-TTTTTCCTTTCAAAGCCCAC
1335338 TGTCGTAACG
Statistics
Matches: 14932, Mismatches: 3274, Indels: 768
0.79 0.17 0.04
Matches are distributed among these distances:
104 26 0.00
106 2 0.00
108 53 0.00
111 2 0.00
117 1 0.00
119 7 0.00
120 427 0.03
121 321 0.02
122 511 0.03
123 3020 0.20
124 9460 0.63
125 665 0.04
126 218 0.01
127 18 0.00
128 8 0.00
129 8 0.00
130 16 0.00
131 22 0.00
132 6 0.00
133 28 0.00
134 16 0.00
135 14 0.00
136 20 0.00
137 61 0.00
138 2 0.00
ACGTcount: A:0.23, C:0.26, G:0.20, T:0.31
Consensus pattern (124 bp):
AGTCCTCAAAGAGCAGGATGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGT
CCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTT
Found at i:1316959 original size:186 final size:185
Alignment explanation
Indices: 1316623--1335337 Score: 16954
Period size: 186 Copynumber: 100.9 Consensus size: 185
1316613 AAGCCTAGTC
* * * * *
1316623 AGTCCTCAAAGAGCAGGATGCTTTTTTCCTTTCAAAGCCCACATGAGTTGCTGGCAGCCTTTAGT
1 AGTCCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGT
* * * * * *
1316688 CCTCAAATAGCAGGATGCCTTTTTCGTTTCAAAACCCACACGGGTTGGTGGC-CTCAATTT-GTC
66 CCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCAC-C-CTTTAGTC
* * * * * * * * *
1316751 CTCCAACAGTAAGACACCTTTTTCTTTTAGAAGCCCACACGGGTTGGTGGTACCCTGT
129 CTCAAAGAGCAGGACGCCTTTTTCTTTCA-AAGCCCACACGAGTTGGTGGCACCCTTT
* * * * * *
1316809 AGTCCTCAATGAGTAGGACACCTTTTCCCTTTCAAAGCCCACAGGAGTTTGTGGCACCCTTTAGT
1 AGTCCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGT
* * * ** ** *
1316874 TCTCAAAAAGCAGGATGCCGCTTTCCTTTCAAAGCCCACGTGAGTTGGTGGCACCCTTCAGTCCT
66 CCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGTCCT
*
1316939 CAAAGAGCAGGACGCCTTTTTCCTTTCAAAGTCCACACGAGTTGGTGGCACCCTTT
131 CAAAGAGCAGGACGCCTTTTT-CTTTCAAAGCCCACACGAGTTGGTGGCACCCTTT
* ** *
1316995 AGTCCTCAAAGAGCAGGCCGCCTTTTTCCTTTCAAAGCCTGCA-TAGTTGGTGGCACCCTTTAGT
1 AGTCCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGT
* ** * * *
1317059 CCTCAAAGAGTAAAACGCCTTTTTCCTTTCAAAACCCATACGAGTTGGTGGCACCCATTAGTCCT
66 CCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGTCCT
* * * * *
1317124 TAAAGAGGAGGACACCTTTTTCCTTTCAAAGCCCACACGAGTTGATGGCTCCCTTT
131 CAAAGAGCAGGACGCCTTTTT-CTTTCAAAGCCCACACGAGTTGGTGGCACCCTTT
* * * * * * * *
1317180 AGTCTTCTATGTGCAGGACGCCTTTTTCTTTTCAAAGCCCACTCGAGTTGGTGGCAGCCTTTAAT
1 AGTCCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGT
** * * *
1317245 CCTCAAAGAGCAGGATACCTTTTTTCCTTTCAAAACCCACACGTGTTGGTGGCAGCCTTTAGTCC
66 CCTCAAAGAGCAGGACGCC-TTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGTCC
* ** * * * * *
1317310 TCAAAGAGCAAGTTGCCTTTTTCCTTTTAAGGCCCACACGGGTCGGTGGCTCCCTTT
130 TCAAAGAGCAGGACGCCTTTTT-CTTTCAAAGCCCACACGAGTTGGTGGCACCCTTT
* ** * ** * *** * * ** * *
1317367 -TTCCTTTCAAAGCCCA-TACGAGTTTATGGCACCCTTT-AGTTCTCA-AAGAGCACGATGCCTT
1 AGTCC--TCAAAGAGCAGGACGCCTTT-T----TCCTTTCAAAGCCCACACGAG-TTGGTGGC--
** * ** * ** *
1317428 TTTCCTTTCAAAG-CCT-ACACGAGTTGGTGGCAGCCTTCAGTCCTTTCAAAGCCCACACCAGTT
56 -ACCCTTT---AGTCCTCA-AAGAG-CAG-GAC-GCCTT-TTTCCTTTCAAAGCCCACACGAGTT
* * * * * ** *
1317491 GGTCGCTCCTTTTAG-CACTCAAAAAGTAGGACAACTTTTTCCTTTCAAAGCCCACAAGAGTTGG
112 GGTGGCACCCTTTAGTC-CTCAAAGAGCAGGACGCCTTTTT-CTTTCAAAGCCCACACGAGTTGG
** *
1317555 TGGGTCCATTT
175 TGGCACCCTTT
* * * * * * ** ** *
1317566 AG---TCAAAGAGTAGGAC-ACTTTTTTCTTTGAAAGCCTAAACGAGTTCATGGCATTCTTTTGT
1 AGTCCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGT
* * * * ** *
1317627 CCTAAAAGAGCAGGACACTTTTTTCTTTTTGAAGCTCACAC-AGGTTGGTGGCACCCTTTAGTCC
66 CCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGA-GTTGGTGGCACCCTTTAGTCC
* * * * *
1317691 TCAAAAAGCATGATGCCTTTTTCCTTTCAAAGCCCATACGAGTTTGTGGCACCCTTT
130 TCAAAGAGCAGGACGCCTTTTT-CTTTCAAAGCCCACACGAGTTGGTGGCACCCTTT
* * * * * * * *
1317748 AGTTCTCAAAGAGCATGATGCCTTTTTCCTTTCAAAGCCAACATGAGTTGGTCGCTCCTTTTAG-
1 AGTCCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGT
* * *** * *
1317812 CACTCAAAAAGTAGGATAACTTTTTCCTTTCAAAGCCCACGCGAGTTGGTGGCTCCCTTTAG---
66 C-CTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGTCC
* * * * *** **
1317874 TCAAAGAGTAGGACACTTTTTTCTTTCAAAGCCCAAACGAGTTCACGGCATTCTTT
130 TCAAAGAGCAGGACGCCTTTTTCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTT
* * * * * ** * * *
1317930 TGTCCTAAAAGAGCAGGACACTTTTTTCTTTTTGAAGCTCACAC-AGGTTAGTGGCACCCATTAG
1 AGTCCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGA-GTTGGTGGCACCCTTTAG
* * * * *
1317994 TCCTCAAAGAGCAGGATGCCTTTTTCTTTTCAAAACCCACGCGAGTTGGTGGCACCCTTCAGTCC
65 TCCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGTCC
* * * *
1318059 TCAAAGAGCAAGACGCCGTTTTCCTTTCATAGTCCACACGAGTTGGTGGCACCCTTT
130 TCAAAGAGCAGGACGCC-TTTTTCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTT
* *
1318116 AGTCCTCAATGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACG-GTTGGTGGCACACTTTAGT
1 AGTCCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGT
* * * * *
1318180 CCTTAAAGAGTAAGG-TGCCATTTTCCTTTCAAAGCTCACACGAGTTGGTGGCACCCTTTAGTCC
66 CCTCAAAGAG-CAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGTCC
** * **** * * * *
1318244 TGGAAGAGGAGGATATTTTTTTCCTTTCAAAGCCGATACGAGTTTGTCGCACCCTTT
130 TCAAAGAGCAGGACGCCTTTTT-CTTTCAAAGCCCACACGAGTTGGTGGCACCCTTT
* * * *
1318301 AGTCTTCAAAGAGCAGGATGCCTTTTTCTTTTCAAAGCCCACACGTGTTGGTGGCACCCTTTAGT
1 AGTCCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGT
* * ** *
1318366 CCTCAAAGAGCAGGGCACCTTTTTCCTTTCAAAGCCCACACGAGTTTATGGCACCCTTTAGTTCT
66 CCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGTCCT
* * * * * *
1318431 CAAAGAGCATGATGCCCTTTTCCTTTTAAAGCCCACGCGACTTGGTGGCA-CCTTT
131 CAAAGAGCAGGACG-CCTTTTTCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTT
*
1318486 CAGTCCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGTCCACACGAGTTGGTGGCACCCTTTAG
1 -AGTCCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAG
* ** * * * *
1318551 TCCTTAAAGAGCAACATGCCTTGTTCCTTTCAAAGCCCACACAAGTTGGTGGCACCTTTTAGTCC
65 TCCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGTCC
** * * *
1318616 TGGAAGAGGAGGACACCTTTTTCCTTTCAAAGCCCACACGAGTTTGTGGCACCCTTT
130 TCAAAGAGCAGGACGCCTTTTT-CTTTCAAAGCCCACACGAGTTGGTGGCACCCTTT
* * * * * * * * * *
1318673 ACTCTTCAAAGAGCTGGACACCTTTTTCTTTTCGAAGCTCACTCGAGTTAGTGTCACCCTTTAGT
1 AGTCCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGT
* * * * *
1318738 CCTCAAAGAGCTGGATGCCTTTTTCCTTTCAAAGGCCACCCAAGTTGGTGGCACCCTTTAGTCCT
66 CCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGTCCT
* * * * **
1318803 CAAAGAGTAGTATGCCTTTTTCTTTTCAAAGCCCACACGAGTTGGTGGTATTCTTT
131 CAAAGAGCAGGACGCCTTTTTC-TTTCAAAGCCCACACGAGTTGGTGGCACCCTTT
* * * * *
1318859 TGTCCTCAAAG-TCTAGGATGCCTTTTTCCTTTCAAAGCTCATACGAGTTGGTGGCACCCTTT-G
1 AGTCCTCAAAGAGC-AGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAG
* ** * * ** * *
1318922 CTCCTCAAAGAGCCGGAAC-CCTTTTTTTTTTCAAAGCCCGCAC-ATATTGGTCACACCATTTTG
65 -TCCTCAAAGAGCAGG-ACGCCTTTTTCCTTTCAAAGCCCACACGA-GTTGGTGGCACCCTTTAG
** * * * * *
1318985 TCCTCAAAGAG-ACGGTTGCCTTTTTATTTTCAAAGCACGCATGATTTGGTGGCACCCTTT
127 TCCTCAAAGAGCA-GGACGCCTTTTT-CTTTCAAAGCCCACACGAGTTGGTGGCACCCTTT
* * *
1319045 AGTCCTCAAAGAGCAGGACGCCTTTTTCCATTCAAAGCCCACACGAGTTGGTGGCACCTTTTACT
1 AGTCCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGT
* * * * * * * *
1319110 CCTC-AAGAGCCA-GAAGCCTTTTTCTTTTTAAAGCCTATATGGGTTGGTGGCACCCTTTTGTCC
66 CCTCAAAGAG-CAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGTCC
* * * * *** * * *
1319173 TTAAATAGTAGCAAATCTTTTTCCTTTCAATGCCCACATGAGTTGGTGGCACTCTTT
130 TCAAAGAGCAGGACGCCTTTTT-CTTTCAAAGCCCACACGAGTTGGTGGCACCCTTT
* * * * * * * *
1319230 AGTCCTTAAAGAGTAGGACACCTTTTTCCTTTCGAAGCCCACGCGGGTTGCTGGCACCCTTTAGC
1 AGTCCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGT
** * * * * * * *
1319295 CCAAAAAGAGTAGGATGCCTTTTTCTTTTCAAAGCCCAGATGGGTTGGTGGCACCCTTCAGTCCT
66 CCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGTCCT
* * * * *
1319360 CAAAGAGCAGGATGCTTTTTTCCTTTCAAAGCCTACACGAGTTGGTGGTATAGCCTTT
131 CAAAGAGCAGGACGCCTTTTT-CTTTCAAAGCCCACACGAGTTGGTGG--CACCCTTT
* ** * * *
1319418 AGTACTCAAAGAGCAGGATTCCTTTTTCGTTTCAAAACCCACACGGGTTGGTGGC-CCCAATTT-
1 AGTCCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCC--TTTA
* * ** * * * *
1319481 GTCCTCCAAGAGTAGGACGCCTTTTTATTTTCAAAGGCCAGATGTGTTGGTGGCACCCTTTAGTC
64 GTCCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGTC
*
1319546 CTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTTGTGGCACCCTTT
129 CTCAAAGAGCAGGACGCCTTTTT-CTTTCAAAGCCCACACGAGTTGGTGGCACCCTTT
* ** * * *
1319604 AGTTCTCAAAGAGCATAATGCCTTTTTCCTTTCAAAGCCCACGCAAGTTGGTGGCACCCTTTAGT
1 AGTCCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGT
* * *
1319669 CCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGTCCACATGAGTTGGTGGCGCCCTTTAGTCCT
66 CCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGTCCT
* * *
1319734 CAAAGAGCAGGACGCTTTTTTCCCTTT-AAAG-CCACCACAAGTTGGTGGCAGCCTTT
131 CAAAGAGCAGGACGCCTTTTT--CTTTCAAAGCCCA-CACGAGTTGGTGGCACCCTTT
* * * * ** ** *
1319790 AGTTCTCAAAGAGTAGGACGCCTATTTCTTTTCAAAGCCCACACGAGTTTCTGGCAATCTTTACT
1 AGTCCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGT
* * * * * * *
1319855 TCTCAAAGAGCAGGATGCCTTTTTCGTTTCAAAACCCACACGGGTTGGTGGC-CTCATTTTGTCC
66 CCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCAC-CCTTTAGTCC
* * * * *
1319919 TTAAAGAGTAGGACACCTTTTTCTTTTCAAAGCCCACAAGTGTTGGTGGCACCCTTT
130 TCAAAGAGCAGGACGCCTTTTTC-TTTCAAAGCCCACACGAGTTGGTGGCACCCTTT
* * * * * * * *
1319976 AGTCCTCAATGAGCAGGACGCCCTTTTCCTTTTAAAGCTCATACGTGTTTGTGGCACCCTTTAAT
1 AGTCCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGT
* * * *
1320041 TCTCAAAGAGCAGGATGCCTTTTTCCTTTCAAAGCCCACGCGAGTTGGTGGCACCCTTCAGTCCT
66 CCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGTCCT
* *
1320106 CAAAGAGCAGGACGCCTTTTTCCTTTCAAAG-GCACACGAGTTGGTAGCACCCTTT
131 CAAAGAGCAGGACGCCTTTTT-CTTTCAAAGCCCACACGAGTTGGTGGCACCCTTT
* * * * * *
1320161 AGTCTTCGAAGAGTAGGATGCCTTTGTCCTTTCAAAGCCCACACGAGTTGGTGGCACCTTTTAGT
1 AGTCCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGT
* * * * * * * * *
1320226 CCTCAAAGAGCAGGTCGTCTTTTTCCTTTTAAAGCCCACGCGAGTTCGTCGCTCTCTTTAGCCCT
66 CCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGTCCT
* * * * *
1320291 CATAGAGTAGGACACCTTTTTTCTTTCAAAGCCCACACGACTTGGTGGCTCCCTTT
131 CAAAGAGCAGGACGCC-TTTTTCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTT
* * * * * *** ** *
1320347 AGTCTTCAAAGCGCAGGATG-CTTTTTTCTTTCAAAGCCCAAACGAGTTGACAGCATTCTTTTGT
1 AGTCCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGT
* * * * * * * *
1320411 CTTGAAAGAGCAGGACACTTTTTTCTTTTTAAAGCTCACA-TAGGTTGGTGGCACCCTTTAGTCC
66 CCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGA-GTTGGTGGCACCCTTTAGTCC
* * * ** * * **
1320475 TCAAAGAGCAGGACGTCTTTTTCCATTCGAAGTGCAAATGAGTTGGTGGCATTCTTT
130 TCAAAGAGCAGGACGCCTTTTT-CTTTCAAAGCCCACACGAGTTGGTGGCACCCTTT
* * * ** *
1320532 AGTTCTCAAAGAGCAGGACG-CTTTTTTCTTTCAAAGCCCAAACGAGTTGGTGGCATTCTTTTGT
1 AGTCCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGT
* * * * *
1320596 CCTCAAAGAGCAGGATGCCTTTTTCTTTTCAAAGCCCACTCGAGTTGGTGGCAGCCTTTAATCCT
66 CCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGTCCT
* * * * * *
1320661 TAAAGAACAGGATGCCTTTTCTCCTTTCAAAACCCACACGAGTTGGTGGTAGCCTTT
131 CAAAGAGCAGGACGCCTTTT-T-CTTTCAAAGCCCACACGAGTTGGTGGCACCCTTT
* * * * * * *
1320718 AGTCCTCAAAGAGCAAGATGCCTTTTTCCTTTTAAAGCCCACACGGGTCGGTGGCTCCCTTTAGC
1 AGTCCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGT
* * * *
1320783 CCTCAAAAAGCAGGACACCTTTTTCCTTTCAAAGCCCACATGAGTTGGT--CACTTCTTTTAG-C
66 CCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCAC--CCTTTAGTC
* * ** * *
1320845 ACTCAAAAAGTAGGACAACTTTTTCCTTTCAAAGCCCACATGAGTTGGTGGCTCCCTTT
129 -CTCAAAGAGCAGGACGCCTTTTT-CTTTCAAAGCCCACACGAGTTGGTGGCACCCTTT
* * * * * ** ** *
1320904 AG---ACAAAGAGTAGGAC-ACTTTTTTCTTTCAAAGCCCAAACGAGTTCATGGCATTCTTTTGT
1 AGTCCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGT
* * * * ** * * *
1320965 CCTAAAAGAGCAGGACACTTTTTTCTTTTTGAAGCTCACAC-AGGTTAGTGGCACCCATTAGTCC
66 CCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGA-GTTGGTGGCACCCTTTAGTCC
* * *
1321029 TCAAAGAGCAGGATGCCTTTTTCTTTTCAAATCCCACACGAGTTGGTGGCACCCTTC
130 TCAAAGAGCAGGACGCCTTTTTC-TTTCAAAGCCCACACGAGTTGGTGGCACCCTTT
* * *
1321086 AGTCCTCAAAGAGCAAGACGCCTTTTTCCTTTCATAGTCCACACGAGTTGGTGGCACCCTTTAGT
1 AGTCCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGT
* * *
1321151 CCTCAATGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACG-GTTGGTGGCTCACTTTAGTCCT
66 CCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGTCCT
* * * * * *
1321215 TAAAGAGTAAGG-TGCCATTTTCCTTTCAAAGTCCACACG-GCTGGTGGCACCCTTT
131 CAAAGAG-CAGGACGCC-TTTTTCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTT
* *
1321270 AGTCCTCAAAGAGCAGGACACTTTTTTCCTTTCAAAG-CCACCACGAGTTGGTGGCACCCTTTAG
1 AGTCCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCA-CACGAGTTGGTGGCACCCTTTAG
* * *
1321334 TCCTCAAAGAGCAAGATGCCTTTTTCCTTTCAAAGCCCACACGA-TTGGTGGCACTCTTTAGTCC
65 TCCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGTCC
* * * * * * *
1321398 TTAAAGAGCAAGG-CGTCATTTTCCTTTCAAAGACCACACGAGGTGGTGGCACTCTAT
130 TCAAAGAGC-AGGACG-CCTTTTTCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTT
* * * * * * * * * *
1321455 AGTCCTGAAAGAGTATGACACCTCTTTCCCTTCAAAGCCCACGCGGGTTGGTGGTACCTTTTAGT
1 AGTCCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGT
* ** * * * * * *
1321520 CCACAAAGAGCAGGACATCTTTTTCTTTTCAAAGCCTAGATGGGTTGGTGGCACCCTTCAGTCCT
66 CCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGTCCT
* * * * * *
1321585 CAAAGAGCAGGATGCTTTTTTCCTTTCAAAGCCCACATGAGTTGCTGGTAGCCTTT
131 CAAAGAGCAGGACGCCTTTTT-CTTTCAAAGCCCACACGAGTTGGTGGCACCCTTT
* * * * * *
1321641 AGTCCTCAAATAGCAGGATGCCTTTTTCGTTTCAAAACCCACACGGGTTGGTGGC-CTCAATTT-
1 AGTCCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCAC-C-CTTTA
* * * * * * * *
1321704 GTCCTCCAACAGTAGGACACCTTTTT-CTTTTAGAAGCCCACACGGGTTGGTGGTACCCTGTAGT
64 GTCCTCAAAGAGCAGGACGCCTTTTTCCTTTCA-AAGCCCACACGAGTTGGTGGCACCCTTTAGT
* * * * * *
1321768 CCTCAATGAGTAGGACACCTTTTCCCTTTCAAAGCCCACAGGAGTTTGTGGCACCCTTT
128 CCTCAAAGAGCAGGACGCCTTTT-TCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTT
* * * ** * ** *
1321827 AGTTCTCAAAAAGCAGGATGCCGCTTTCCTTTCAAAGCCTACGTGAGTTGGTGGCACCCTTCAGT
1 AGTCCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGT
*
1321892 CCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGTCCACACGAGTTGGTGGCACCCTTTAGTCCT
66 CCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGTCCT
* ** *
1321957 CAAAGAGCAGGCCGCCTTTTTCCTTTCAAAGCCTGCA-TAGTTGGTGGCACCCTTT
131 CAAAGAGCAGGACGCCTTTTT-CTTTCAAAGCCCACACGAGTTGGTGGCACCCTTT
** * * *
1322012 AGTCCTCAAAGAGCAAAACGCCTTTTTCCTTTCAAAACCCATACGAGTTGGTGGCACCCATTAGT
1 AGTCCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGT
* * * * * *
1322077 CCTTAAAGAGGAGGACACCTTTTTCCTTTCAAAGCCCACACGAGTTGATGGCTCCCTTTAGTCTT
66 CCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGTCCT
* * * * *
1322142 CTATGTGCAGGACGCCTTTTTCTTTTCAAAGCCCACTCGAGTTGGTGGCAGCCTTT
131 CAAAGAGCAGGACGCCTTTTTC-TTTCAAAGCCCACACGAGTTGGTGGCACCCTTT
* ** * * *
1322198 AATCCTCAAAGAGCAGGATACCTTTTTTCCTTTCAAAACCCACACGTGTTGGTGGCAGCCTTTAG
1 AGTCCTCAAAGAGCAGGACGCC-TTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAG
* ** * * * * * *
1322263 TCCTCAAAGAGCAAGTTGCCTTTTTCCTTTTAAGGCCCACACGGGTCGGTGGCTCCCTTT-TTCC
65 TCCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGTCC
* * * * ** * ***
1322327 TTTCAAAGCCCATACGAGTTTATGGCACCCTTTAGTTCTCAAAG---AGCACGA--TGCCT-TTT
130 --TCAAAG---A-GC-AG-----GACGCCTTTTTCTT-TCAAAGCCCA-CACGAGTTG-GTGGCA
*
1322386 TCCTTT
180 CCCTTT
* ** * ** * *
1322392 CAAAG-CCT-ACACGAGTTGGTGGCAGCCTTCAGTCCTTTCAAAGCCCACACGAGTTGGTCGCTC
1 ---AGTCCTCA-AAGAG-CAG-GAC-GCCTT-TTTCCTTTCAAAGCCCACACGAGTTGGTGGCAC
* * * ** * ** *
1322455 CTTTTAG-CACTCAAAAAGTAGGACAACTTTTTCCTTTCAAAGCCCACAAGAGTTGGTGGGTCCA
58 CCTTTAGTC-CTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCC
* * * * * * ** **
1322519 TTTAG---TCAAAGAGTAGGACACTTTTTTCTTTGAAAGCCTAAACGAGTTCATGGCATTCTTT
122 TTTAGTCCTCAAAGAGCAGGACGCCTTTTTCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTT
* * * * * ** *
1322580 TGTCCTAAAAGAGCAGGACACTTTTTTCTTTTTGAAGCTCACAC-AGGTTGGTGGCACCCTTTAG
1 AGTCCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGA-GTTGGTGGCACCCTTTAG
* * * * * *
1322644 TCCTCAAAAAGCATGATGCCTTTTTCCTTTCAAAGCCCATACGAGTTTGTGGCACCCTTTAGTTC
65 TCCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGTCC
* * * * * * *
1322709 TCAAAGAGCATGATGCCTTTTTCCTTTCAAAGCCAACATGAGTTGGTCGCTCCTTTT
130 TCAAAGAGCAGGACGCCTTTTT-CTTTCAAAGCCCACACGAGTTGGTGGCACCCTTT
* * *** * *
1322766 AG-CACTCAAAAAGTAGGATAACTTTTTCCTTTCAAAGCCCACGCGAGTTGGTGGCTCCCTTTAG
1 AGTC-CTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAG
* * * * ** ** *
1322830 ---TCAAAGAGTAGGAC-ACTTTTTTCTTTCAAAGCCCAAACGAGTTCATGGCATTCTTTTGTCC
65 TCCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGTCC
* * * ** * * *
1322891 TAAAAGAGCAGGACACTTTTTTCTTTTTGAAGCTCACAC-AGGTTAGTGGCACCCATT
130 TCAAAGAGCAGGACGCCTTTTTC-TTTCAAAGCCCACACGA-GTTGGTGGCACCCTTT
* * * * *
1322948 AGTCCTCAAAGAGCAGGATGCCTTTTTCTTTTCAAAACCCACGCGAGTTGGTGGCACCCTTCAGT
1 AGTCCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGT
* * * *
1323013 CCTCAAAGAGCAAGACGCCGTTTTCCTTTCATAGTCCACACGAGTTGGTGGCACCCTTTAGTCCT
66 CCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGTCCT
* *
1323078 CAATGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACG-GTTGGTGGCACACTTT
131 CAAAGAGCAGGACGCCTTTTT-CTTTCAAAGCCCACACGAGTTGGTGGCACCCTTT
* * * * *
1323133 AGTCCTTAAAGAGTAAGG-TGCCATTTTCCTTTCAAAGCTCACACGAGTTGGTGGCACCCTTTAG
1 AGTCCTCAAAGAG-CAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAG
** * **** * * * * * *
1323197 TCCTGGAAGAGGAGGATATTTTTTTCCTTTCAATGCCGATACGAGTTTGTCGCACCCTTTAGTCT
65 TCCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGTCC
* *
1323262 TCAAAGAGCAGGATGCCTTTTTCTTTTCAAAGCCCACACGTGTTGGTGGCACCCTTT
130 TCAAAGAGCAGGACGCCTTTTTC-TTTCAAAGCCCACACGAGTTGGTGGCACCCTTT
* * * **
1323319 ATTCCTCAAAGAGCAGGGCACCTTTTTCCTTTCAAAGCCCACACGAGTTTATGGCACCCTTTAGT
1 AGTCCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGT
* * * * * * *
1323384 TCTCAAAGAGCATGATGCCCTTTTCCTTTTAAAGCCCACGCGACTTGGTGGCA-CCTTTCAGTCC
66 CCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTT-AGTCC
* *
1323448 TCAAAGAGCAGGACACCTTTTTCCTTTCAAAGTCCACACGAGTTGGTGGCACCCTTT
130 TCAAAGAGCAGGACGCCTTTTT-CTTTCAAAGCCCACACGAGTTGGTGGCACCCTTT
* * * * * *
1323505 AGTCCTTAAAGAGCAAGATGCCTTGTTCCTTTCAAAGCCCACACAAGTTGGTGGCACCTTTTAGT
1 AGTCCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGT
** * * * * *
1323570 CCTGGAAGAGGAGGACACCTTTTTCCTTTCAAAGCCCACACGAGTTTGTGGCACCCTTTACTCTT
66 CCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGTCCT
* * * * * * *
1323635 CAAAGAGCTGGACACCTTTTTCTTTTCGAAGCTCACTCGAGTTAGTGTCACCCTTT
131 CAAAGAGCAGGACGCCTTTTTC-TTTCAAAGCCCACACGAGTTGGTGGCACCCTTT
* * * * *
1323691 AGTCCTCAAAGAGCTGGATGCCTTTTTCCTTTCAAAGGCCACCCAAGTTGGTGGCACCCTTTAGT
1 AGTCCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGT
* * * * * ** *
1323756 CCTCAAAGAGTAGTATGCCTTTTTCTTTTCAAAGCCCACACGAGTTGGTGGTATTCTTTTGTCCT
66 CCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGTCCT
* * * *
1323821 CAAAG-TCTAGGATGCCTTTTTCCTTTCAAAGCTCATACGAGTTGGTGGCACCCTTT
131 CAAAGAGC-AGGACGCCTTTTT-CTTTCAAAGCCCACACGAGTTGGTGGCACCCTTT
* ** * ** *
1323877 -GCTCCTCAAAGAGCCGGAAC-CCTTTTTTTTTTCAAAGCCCGCAC-AGATTGGTCACACCATTT
1 AG-TCCTCAAAGAGCAGG-ACGCCTTTTTCCTTTCAAAGCCCACACGAG-TTGGTGGCACCCTTT
* ** ** * * * *
1323939 TGTCCTCAAAGAG-ACGGTTGCCTTTTTATTTTCAAAGCACGCATGATTTGGTGGCACCCTTTAG
63 AGTCCTCAAAGAGCA-GGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAG
* *
1324003 TCCTCAAAGAGCAGGACGCCTTTTTCCATTCAAAGCCCACACGAGTTGGTGGCACCTTTT
127 TCCTCAAAGAGCAGGACGCCTTTTT-CTTTCAAAGCCCACACGAGTTGGTGGCACCCTTT
* * * * * * * * *
1324063 ACTCCTC-AAGAGTCA-GAAGCCTTTTTCTTTTTAAAGCCTATATGGGTTGGTGGCACCCTTTTG
1 AGTCCTCAAAGAG-CAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAG
* * * * *** * * *
1324126 TCCTTAAATAGTAGCAAATCTTTTTCCTTTCAATGCCCACATGAGTTGGTGGCACTCTTTAGTCC
65 TCCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGTCC
* * * * * * *
1324191 TTAAAGAGTAGGACACCTTTTTCCTTTCGAAGCCCACGCGGGTTGCTGGCACCCTTT
130 TCAAAGAGCAGGACGCCTTTTT-CTTTCAAAGCCCACACGAGTTGGTGGCACCCTTT
* ** * * * * * * *
1324248 AGCCCAAAAAGAGTAGGATGCCTTTTTCTTTTCAAAGCCCAGATGGGTTGGTGGCACCCTTCAGT
1 AGTCCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGT
* * * * * * *
1324313 CCTCAAAGAGCACGATGCTTTTTTCCTTTCAAAGCCTACACGAGTTGGTGGTAGCCTTTAGTACT
66 CCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGTCCT
** *
1324378 CAAAGAGCAGGATTCCTTTTTCGTTTCAAAACCCACACG-GTTTGGTGGC-CCCAATTT
131 CAAAGAGCAGGACGCCTTTTTC-TTTCAAAGCCCACACGAG-TTGGTGGCACCC--TTT
* * ** * * * *
1324435 -GTCCTCCAAGAGTAGGACGCCTTTTTATTTTCAAAGGCCAGATGTGTTGGTGGCACCCTTTAGT
1 AGTCCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGT
* *
1324499 CCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTTGTGGCACCCTTTAGTTCT
66 CCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGTCCT
** * * *
1324564 CAAAGAGCATAATGCCTTTTTCCTTTCAAAGCCCACGCAAGTTGGTGGCACCCTTT
131 CAAAGAGCAGGACGCCTTTTT-CTTTCAAAGCCCACACGAGTTGGTGGCACCCTTT
* * **
1324620 AGTCCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGTCCACATGAGTTGGTGGTGCCCTTTAGT
1 AGTCCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGT
* * *
1324685 CCTCAAAGAGCAGGACGCTTTTTTCCCTTT-AAAG-CCACCACGAGTTGGTGGCAGCCTTTAGTT
66 CCTCAAAGAGCAGGACGCCTTTTT-CCTTTCAAAGCCCA-CACGAGTTGGTGGCACCCTTTAGTC
* * ** **
1324748 CTCAAAGAGTAGGACGCCTATTTCTTTTCAAAGCCCACACGAGTTTTTGGCAATCTTT
129 CTCAAAGAGCAGGACGCCTTTTTC-TTTCAAAGCCCACACGAGTTGGTGGCACCCTTT
* * * * * * * *
1324806 ACTTCTCAAAGAGCAGGATGCCTTTTTCGTTTCAAAACCCACACGGGTTGGTGGC-CTCATTTTG
1 AGTCCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCAC-CCTTTAG
* * * * * * *
1324870 TCCTTAAAGAGTAGGACACCTTTTTCTTTTCAAAGCCCACAAGTGTTAGTGGCACCCTTTAGTCC
65 TCCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGTCC
* * * * * * *
1324935 TCAATGAGCAGGACGCCCTTTTCCTTTTAAAGCTCATACGTGTTTGTGGCACCCTTT
130 TCAAAGAGCAGGACG-CCTTTTTCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTT
* * * * *
1324992 AATTCTCAAAGAGCAGGATGCCTTTTTCCTTTCAAAGCCCACGCGAGTTGGTGGCACCCTTCAGT
1 AGTCCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGT
* * * *
1325057 CCTCAAAGAGAAGGACGCCTTTTTCCTTTCAAAG-GCACACGAGTTGGTAGCACCCTTTAGTCTT
66 CCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGTCCT
* * * * * *
1325121 CGAAGAGTAGGATGCCTTTGTCCTTTCAAAGCCCACACGAGTTTGTGGCACCTTTT
131 CAAAGAGCAGGACGCCTTT-TTCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTT
* * * * *
1325177 AGTCCTCGAAGTGAAGGACACCTTTTTCCTTTCAAAGCCCACACAAGTTGGTGGCACCCTTTAGT
1 AGTCCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGT
* * * * *
1325242 CTTCAAAGAGCAGGACACCTTTTTCTTTTCAAAGCCCACTCGAGTTGGTGGCACCTTTTAGTCCT
66 CCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGTCCT
* * **
1325307 CAAAGAGCAGGTCGTCTTTTTCCTTTCAAAGCCCACGTGAGTTGGT--CACTCTCTTT
131 CAAAGAGCAGGACGCCTTTTT-CTTTCAAAGCCCACACGAGTTGGTGGCAC-C-CTTT
* * * * *
1325363 AGCCCTCATAGAGTAGGACACCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCTCCCTTTAGT
1 AGTCCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGT
* * * * * * * *
1325428 CCTCAAAGCGTAAGATG-CTTTTTTCTTTCAAAGCCCACACGTGGTTGGTGGCACCTTTTAGTAC
66 CCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACG-AGTTGGTGGCACCCTTTAGTCC
* *
1325492 TTAAAGAGCAAGG-CGCCATTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTT
130 TCAAAGAGC-AGGACGCC-TTTTTCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTT
* * ** * * * * * * *
1325549 AATGCTGGAAGAGGAGGACACCTATTTCCTTTCAAAGCCCGCACGAGTTTGTCGCACCTTTTAGT
1 AGTCCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGT
* * * * **
1325614 CTTCAAAGAGTAGGATGCCTTTTTCTTTTCAAAGCCCACTTGAGTTGGTGGCACCCTTTAGTCCT
66 CCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGTCCT
* * * * * *
1325679 CAAAGAGCAAGATG-TTTTCTTCCATTT-AATG-CCACCACGAGTTGGTGGTAGCCTTT
131 CAAAGAGCAGGACGCCTTT-TT-C-TTTCAAAGCCCA-CACGAGTTGGTGGCACCCTTT
* * * * * ** * *
1325735 AGTTCTTAAAGAGTAGGACGCCTATTTCTTTTCAAAGCCCACACGAGTTTCTGGCAACCTTTACT
1 AGTCCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGT
* * * * * * * *
1325800 TCTCAAAGAGCAAGATGCCTTTTTCGTTTCAAAACCCACACGGGTTGGTGGC-CTCATTTTGTCC
66 CCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCAC-CCTTTAGTCC
* * * * *
1325864 TAAAAGAGTAGGACACCTTTTTCTTTTCAAAGCCCACAAGTGTTGGTGGCACCCTTT
130 TCAAAGAGCAGGACGCCTTTTTC-TTTCAAAGCCCACACGAGTTGGTGGCACCCTTT
* * * * * *
1325921 AGTCCTCAATGAGCAGGACACCTTTTTCCTTTCAAAGCTCATACGTGTTTGTGGCACCCTTTAGT
1 AGTCCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGT
* * * *
1325986 TCTCAAAGAGCAGGATGCCTTTTTCCTTTCAAAGCCCACGCGAGTTGGTGGCACCCTTCAGTCCT
66 CCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGTCCT
*
1326051 CAAAGAGCAGGATGCCTTTTTCCTTTCAAAG-CCACACGAGTTGGTGGCACCCTTT
131 CAAAGAGCAGGACGCCTTTTT-CTTTCAAAGCCCACACGAGTTGGTGGCACCCTTT
* * * * * * *
1326106 AGTCTTCGAAGAGTA-GATGCCTTTGTCCTTTCAAAGCCCACACGAGTTTGTGGCACCTTTTAGT
1 AGTCCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGT
* * * * * *
1326170 CCTCGAAGTGAAGGACACCTTTTTCCTTTCAAAGCCCACACAAGTTGGTGGCACCCTTTAGTCTT
66 CCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGTCCT
* * *
1326235 CAAAGAGCAGGACACCTTTTTCTTTTCAAAGCCCACTCGAGTTGGTGGCACCTTTT
131 CAAAGAGCAGGACGCCTTTTTC-TTTCAAAGCCCACACGAGTTGGTGGCACCCTTT
* * * * * * * * *
1326291 AGTCCTCAAAGAGCAGGTCGTCTTTTTCCTTTCAATGCCCACGCGAGTTCGTCGCTCTCTTTAGC
1 AGTCCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGT
* * * * * *
1326356 CCTCATAGAGTAGGACACCTTTTTCCTTTCAAAGCCCACACGACTTGGTGGCTCCCTTTAGTCTT
66 CCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGTCCT
* * * * *** **
1326421 CAAAGCGCAGGATGCTTTTTTCTTTCAAAGCCCAAACGAGTTGACAGCATTCTTT
131 CAAAGAGCAGGACGCCTTTTTCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTT
* * * *** * * * *
1326476 TGTCTTGAAAGAGCAGGACATTTTTTTCTTTTTAAAGCTCACA-TAGGTTGGTGGCACCCTTTAG
1 AGTCCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGA-GTTGGTGGCACCCTTTAG
* * * ** * ** *
1326540 TCCTCAAAGAGCAGGACGTCTTTTTCCATTCGAAGTGCAAACGAGTTGGTGGCATTCTTTAGTTC
65 TCCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGTCC
* * **
1326605 TCAAAGAGCAGGACGCTTTTTTCTTTCAAAGCCCAAACGAGTTGGTGGCATTCTTT
130 TCAAAGAGCAGGACGCCTTTTTCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTT
* * * * *
1326661 TGTCCTCAAAGAGCAGGATGCCTTTTTCCTTTCAAAGCCCGCACGAGTCGGTGGCTCCCTTTAG-
1 AGTCCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGT
* * * * *
1326725 CTCTCAAAAAGCTAGG-CACCTTTTTCCTTTCAAAGCCCACACGAGTTGGTCGCTCCCTTTAGCC
66 C-CTCAAAGAGC-AGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGTC
* * * *
1326789 CTCAAAAAGCAGGACACCTTTTTTCTTTCAATGCCCACACGAGTTGGTAGTC-CCCTTT
129 CTCAAAGAGCAGGACGCC-TTTTTCTTTCAAAGCCCACACGAGTTGGT-GGCACCCTTT
* * * **
1326847 AGTCCTCAAAGAGCAGGATGCCTTTTTCCTTTCAAAGCGCAAACGAGTTGGTGGCAATCTTTAGT
1 AGTCCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGT
* ** * * ***
1326912 CCTCAAAGAGCAGGACG-CTTTTT--TTTTAAAGCTGAAATGAGTTGGTGGCATTTTTTAGTCCT
66 CCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGTCCT
* * * * * *
1326974 CAAAGAGTAGGATGCTTTTTTCCTTTTAAA-CCTCATACG-GATTGGTAGCACCCTTT
131 CAAAGAGCAGGACGCCTTTTT-CTTTCAAAGCC-CACACGAG-TTGGTGGCACCCTTT
* * * * * *
1327030 AGTCCTTAATGAGTAGGACGCATTTTT-TTTTCAAAGCCCACCCGAGTTGGTGGCACCCTTTAGT
1 AGTCCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGT
* * * * * * * ** * * *
1327094 CCTTAAAAAGTAGGATGTCTTTTTCGTTTCAAAGCCCACACAAGTTGGTGGTGCCATTTTGTTCT
66 CCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGTCCT
* * ** *
1327159 CAAAGAGCAAGACACCTTTTTCTTTTCAAAGCCCACAC--G-TGGTGGCACTATGT
131 CAAAGAGCAGGACGCCTTTTTC-TTTCAAAGCCCACACGAGTTGGTGGCACCCTTT
* *** *
1327212 AGTCCTCAATGAGCAGGACATTTTTTTCCTTTCAAAGCCCACACGAGTTTGTGGCACCCTTTAGT
1 AGTCCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGT
* * * * * * * *
1327277 TCTTAAAGAGCAGGATGCCGTTTTCCCTTCAAAGCCCACGCGAGTTGGTGGCATCCTTCAGTCCT
66 CCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGTCCT
* * *
1327342 CAAAGAGCAGGATGCCATTTTCCTTTCAAAGCCCACACGAGTTAGTGGCACCCTTT
131 CAAAGAGCAGGACGCC-TTTTTCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTT
** ** *
1327398 AGTCCTCAAAGAGTGGGTTGCCTTTTTCATTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGT
1 AGTCCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGT
** ** **
1327463 CCTCAAAGAGTGGGTTGCCTTTTTCAATTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGTCCT
66 CCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGTCCT
* * * * * ** ***
1327528 CAAAGAGCAGGATGCTTTTTTCTTTCGATGCCCAAACGAGTTGACGGCATTTTTT
131 CAAAGAGCAGGACGCCTTTTTCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTT
* * * * * * * **
1327583 TGTCTTGAAAGAGCAGGACACTTTTTTCTTTTTAAAGCTTACAC-AGGTTGGTGGCACCCTTTAG
1 AGTCCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGA-GTTGGTGGCACCCTTTAG
* * * * ** * **
1327647 TCCTCAAAGCGCAGGACGTCTTTTTCCATTCGAAGTGCAAACGAGTTGGTGGCATTCTTTAGTCC
65 TCCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGTCC
* * ** *
1327712 TCAAAAAGCAGGATG-CTTTTTCCTTTCAAAGCCCACACGAGTTGGCCGC-TCCTTT
130 TCAAAGAGCAGGACGCCTTTTT-CTTTCAAAGCCCACACGAGTTGGTGGCACCCTTT
* * * * * *
1327767 AGCCCTCAATGAGTAGGACACCTTTTTCCTTTCAAAGCCCACACGACTTGGTGGCTCCCTTTAGT
1 AGTCCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGT
* * * * * ** ** * *
1327832 CTTCAAAGAGCAGGATG-CTTTTTTCTTTGAAAGCCCAAACGAGTTGACGGCATTCTTTTGTCTT
66 CCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGTCCT
* * * * * *
1327896 GAAAGAGCAGGACACTTTTTTCTTTTTAAAGCTCACA-TAGGTTGGTGGCACCCTTT
131 CAAAGAGCAGGACGCCTTTTTC-TTTCAAAGCCCACACGA-GTTGGTGGCACCCTTT
* * * ** * ** *
1327952 AGTCCTCAAAGAGCAGGACGTCTTTTTCCATTCGAAGTGCAAACGAGTTGGTGGCATTCATTAGT
1 AGTCCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGT
* * * * ** *
1328017 CCTCAAAGAGCAGGACG-CTTTTTTCTTTCAAAGTCCAAACGAGTTGGTGGTATTCTTTTGTCCT
66 CCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGTCCT
* * * * * * *
1328081 CAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCGCATGGGTCGATGGCACCATGT
131 CAAAGAGCAGGACGCCTTTTT-CTTTCAAAGCCCACACGAGTTGGTGGCACCCTTT
* * ** * *
1328137 AGTCCTCAATGAGCAGGTCATCTTTTTCCTTTGAAAGCCCACACGAGTTTGTGGCACCCTTTAGT
1 AGTCCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGT
* * * *
1328202 TCTTAAAGAGCAGGATGCCTTTTTCCTTTCAAAGCCCACACGAGTTAGTGGCACCCTTTAGTCCT
66 CCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGTCCT
** *
1328267 CAAAGAGTGGGATGCCTTTTTCATTTCAAAGCCCACACGAGTTGGTGGCACCCTTT
131 CAAAGAGCAGGACGCCTTTTTC-TTTCAAAGCCCACACGAGTTGGTGGCACCCTTT
* * * * * * * * * **
1328323 AGTCCTCAAAGAGTAGGACGTCTTATGCCATTCAAAGCGCAAATGATTTGGTGGCATTCTTTAGT
1 AGTCCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGT
* ** * * * * ** *
1328388 CCTCAAAGAGCAGGAC-ACTTTTTTTTTTCAAAGCCCAAATGAGTTAGCGGCATTCTTTTGTCCT
66 CCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGTCCT
* *
1328452 CAAAGA-CTAGGATGCCTTTTTCCTTTCAAAGCCCACACGAGCTGGTGGCACCCTTT
131 CAAAGAGC-AGGACGCCTTTTT-CTTTCAAAGCCCACACGAGTTGGTGGCACCCTTT
* * * * * * * * * *
1328508 ACTCTTCAAAGCGCCGGAAGCCTTTTTCTTTTCAAAGCTTGCACA-G-GTTGGTGGCGCCATTTT
1 AGTCCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGC--CCACACGAGTTGGTGGCACCCTTTA
* * * * *
1328571 GTCCTCAAAGAG-AGGGACACCTTTTTCTTTTCAAAGCCCACGCGAGTTGGTGGCACACTATAGT
64 GTCCTCAAAGAGCA-GGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGT
*
1328635 CCTCAAAGAGCAGGACGCATTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTT
128 CCTCAAAGAGCAGGACGCCTTTTT-CTTTCAAAGCCCACACGAGTTGGTGGCACCCTTT
** * * * * * *
1328694 ACCCCTCAAAGAGCCA-GAAGCCTTTTTCTTTTCAAAGCCCACATGGGTTGGTGGAACCCTTTTG
1 AGTCCTCAAAGAG-CAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAG
* * ** * * * * *
1328758 TCCTTAAAGAGTAGGACATCTTTTTCCTTTCAATGCCCACACGAGTTGGTAGCACTCTTTATTGC
65 TCCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGTCC
* * ** *
1328823 TCAAAGAGTAGGACACCTTTTTCCTTTCAAAAACCACACGGGTTGGTGGCACCCTTT
130 TCAAAGAGCAGGACGCCTTTTT-CTTTCAAAGCCCACACGAGTTGGTGGCACCCTTT
* * * * * * * * * * *
1328880 AGTTCACAAAGAGCAAGATGCCTTTTTCTTTTCAAAGCCTAGATGGGTTGGTAGCACCCTTCAGT
1 AGTCCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGT
* * * * *
1328945 CCTCAAAGAGCAGAATGCTTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGTAGCCTTTAGTCCT
66 CCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGTCCT
* * * * * * * *
1329010 CAAAGAGTAGGATGCCCTTTTCGTTTCAAAACCCACATGGGTTGATGGC-CTCAATTT
131 CAAAGAGCAGGACGCCTTTTTC-TTTCAAAGCCCACACGAGTTGGTGGCAC-C-CTTT
* * * * * *
1329067 -GTCCTCCAAGAGTAGGATC-CATTTTTCTTTTCAAAGCCTACACGTGTTGGTGGCACCCTTTAG
1 AGTCCTCAAAGAGCAGGA-CGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAG
* * * *
1329130 TCCACAAAGAGCAGGATGCCTTTTTCCTTTCAAAGCCCACACGAGTTTGTGGCACCCTTTAGTTC
65 TCCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGTCC
* * * * *
1329195 TTAAAGAGCACGATGCCTTTTTCCTTTCAAAGCCCACGCGAGTTGGTGGCACCCTTC
130 TCAAAGAGCAGGACGCCTTTTT-CTTTCAAAGCCCACACGAGTTGGTGGCACCCTTT
* * * * * * *
1329252 AGTCCTCAAAGAGTAGGTCACCTTTTTCCTTTCAAAGTCCACATGAGTTGATGTCACCCTTTAGT
1 AGTCCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGT
* *
1329317 CCTCAAAGAGCAGGATGCCTTTTTCCTTTTAAAGCCCACACG-GTTGGTGGCACCCCTTTAGTCC
66 CCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCA-CCCTTTAGTCC
* * *
1329381 TTAAAGAGCAAGGCAC-CATTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTT
130 TCAAAGAGC-AGG-ACGCCTTTTTCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTT
** * * * *
1329438 AGTCCTGGAAGAGGAGGACACCTTTTTTCCTTTCAAAGTCCACACGAGTTTGTGGCACCCTTTAG
1 AGTCCTCAAAGAGCAGGACGCC-TTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAG
* * * * * *
1329503 TCTTCAAAGAGTAGGATGCCTTTTTCTTTTCAAAGCCCACTCGAGTTGGTAGCACCCTTTAGTCC
65 TCCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGTCC
*
1329568 TCAAAGAGCAGGACGCCTTTTTCCTTTCAAAG-CCACCACGAGTTGGTGGCAGCCTTT
130 TCAAAGAGCAGGACGCCTTTTT-CTTTCAAAGCCCA-CACGAGTTGGTGGCACCCTTT
* * * * * * *
1329625 AGTTCTCAAAGAGTAGGAAGCCTTTTTCTTTTCAAAGCCCGCACAAGTTTGTGGCACCCTTTAGT
1 AGTCCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGT
* * * * * * *
1329690 TCTCGAAGAGCAGGATGCCTTTTTCGTTTCAAAACCCACACGAGTTGGTGGC-CTCATTTTGTCC
66 CCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCAC-CCTTTAGTCC
** * * * * *
1329754 TCAAAGAATAGGACACTTTTTTCTTTTCAAAGCCCAAAAGTGTTGGTGGCACCCTTT
130 TCAAAGAGCAGGACGCCTTTTTC-TTTCAAAGCCCACACGAGTTGGTGGCACCCTTT
* * * * * * *
1329811 AGTCCTCAATGAGCAGGACGTCTTTTTCCTTTCAAAGCTCATACGTGTTTGTGGTACCCTTTAGT
1 AGTCCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGT
* * * * * *
1329876 TCTCAAAGAGCACGATGCCTTTTTCCTTTCAAAGCCCACGCTAGTTGGTGGCACCCTTCAGTCCT
66 CCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGTCCT
* * * *
1329941 CAAAGAGTAGGACACCTTTTTCCTTTCAAAGCCGACACGAGTTGGTGGCACCCTAT
131 CAAAGAGCAGGACGCCTTTTT-CTTTCAAAGCCCACACGAGTTGGTGGCACCCTTT
* * * * *
1329997 AGTCTTCAAAGAGTAGGATGCCTTTGTGCTTTCAAAGCCCACACGAGTTGGTGGCA-CCTTTAGT
1 AGTCCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGT
* * * * *
1330061 CCTCGAAGTGAAGGACACCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGTCTT
66 CCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGTCCT
* * **
1330126 CAAAGAGCAGGACACTTTTTTCCTTTCAAAGCCCACACGAGTTAATGGCACCCTTT
131 CAAAGAGCAGGACGCCTTTTT-CTTTCAAAGCCCACACGAGTTGGTGGCACCCTTT
* * * * ** * *
1330182 AGTCCTCAAAGAGCAAGATGCCTTTTTCCTTTCAAAGCCCACGCGAGTTGGTCGTTCTCTTTAGC
1 AGTCCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGT
* ** * *
1330247 CCTCAATGAATAGGACACCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGTCTT
66 CCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGTCCT
* * **
1330312 CAAAGAGCAGGACACTTTTTTCTTTTCAAAGCCCACACGAGTTAATGGCACCCTTT
131 CAAAGAGCAGGACGCCTTTTTC-TTTCAAAGCCCACACGAGTTGGTGGCACCCTTT
* * * * ** * *
1330368 AGTCCTCAAAGAGCAAGATGCCTTTTTCCTTTCAAAGCCCACGCGAGTTGGTCGTTCTCTTTAGC
1 AGTCCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGT
* ** * * * * **
1330433 CCTCAATGAATAGGACACCTTTTTCCTTTCAAAGCCCATACCACTTGGTGGTTCCCTTTAGTCCT
66 CCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGTCCT
* * * * ** **
1330498 CAAAGAGTAGGATGCTTTTTTCTTTCAAAGCCCAAACGAGTTGACGGCATTCTTT
131 CAAAGAGCAGGACGCCTTTTTCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTT
* * * * * * * ** *
1330553 TGTCTTGAAAGAGCAGGACACTTTTTTCTTTTTAAAGCTTACA-TAGGTTGGTGGCACCCTTTAG
1 AGTCCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGA-GTTGGTGGCACCCTTTAG
* ** * * ** * ***
1330617 TCCTCAAAGAGTAGGACAACTTTTTCCATTCGAAGTGCAAACGAGTTGGTGGCATTATTTAGTCC
65 TCCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGTCC
* * * * * **
1330682 TCAAAGAGCAGGACACTTTTTTCTTTCAAAGGCCAAACGAGTTGGTGGTATTCTTT
130 TCAAAGAGCAGGACGCCTTTTTCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTT
* ** * * * *
1330738 TGTCCTCAAAGATTAGGACACCTTTTT-CTTTTAATAACCCACACGTGTTGGTGGCACCCTATT-
1 AGTCCTCAAAGAGCAGGACGCCTTTTTCCTTTCAA-AGCCCACACGAGTTGGTGGCACCCT-TTA
* * * * * * * *
1330801 GTCCTTAATGAGTAGGACACTTTTTTCCTTTCAAAGCCCCCACGAGTTTGTGGCACCCTTTAGTT
64 GTCCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGTC
* * * *
1330866 CTCAAAGAGCAGGATGCCATTTTCCTTTCAAAGCCCACGCGAGTTGGTGGCACCCTTC
129 CTCAAAGAGCAGGACGCC-TTTTTCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTT
* * *
1330924 AGTCCTCAAAGAGCAAGACGCCTTTTTCCTTTCAATGCCCACAAGAGTTGGTGGCACCCTTTAGT
1 AGTCCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGT
** * * * *
1330989 TATCAAACAGCAGGACGCCTTTTTCCTTTCAAAGCCCGCA-TAGTT-GTAGCACCCTTTAGTCCT
66 CCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGTCCT
* * * * * *
1331052 CAAAGAGCAAGATGTCTTTTTCATTTCAAAACCCACATGAGTTGGTGGCACCCATT
131 CAAAGAGCAGGACGCCTTTTTC-TTTCAAAGCCCACACGAGTTGGTGGCACCCTTT
** * * * *
1331108 AGTCCTTGAAGAGGAGGACACCTTTTTCCTTTCAAAGCCCACACGAGTTAGTGGCTCCCTTTAGT
1 AGTCCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGT
* * ** * * * * * *
1331173 CTTCCAAGAGCAAAACACCTTTTT-CTTTCCAAAGCCCACTCGAGTCGATGGCAACCTTTAATCC
66 CCTCAAAGAGCAGGACGCCTTTTTCCTTT-CAAAGCCCACACGAGTTGGTGGCACCCTTTAGTCC
* * * *
1331237 TCAAGGAGCAGGATGCCTCTTTTCCTTTCAAAGCCCACACGAGTTGGTGGTAGCCTTT
130 TCAAAGAGCAGGACGCCT-TTTT-CTTTCAAAGCCCACACGAGTTGGTGGCACCCTTT
* * * * * * * * * *
1331295 AGTCCTCAAAAAGGAAGATGCCTTTTTCCTTTTAAAGCCCACACGGGTCGGTGGCTCACTTTAGC
1 AGTCCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGT
* * * * * * * * *
1331360 CCTCAAAAAGTAGGACACCTTTTTCCTTTCAAAGCCGACACGATTTGGTCGCTCCTTTTAGCCCT
66 CCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGTCCT
* * * *
1331425 CAAAAAGTAGGACACCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCTCCCTTT
131 CAAAGAGCAGGACGCCTTTTT-CTTTCAAAGCCCACACGAGTTGGTGGCACCCTTT
* ** * * ** ** *
1331481 AGTCCTCAAAGAGTAGGAC-ATTTTTTTCTTTCAAAGCCCAAACGAGTTCATGGCATTCTTTTGT
1 AGTCCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGT
* ** * *
1331545 CCTAAAAGAGCAGGAC-AATTTTTTCTTTCTAAAGCTCAC-C-AGGTTGGTGGCACCCTTTAGTC
66 CCTCAAAGAGCAGGACGCCTTTTTCCTTTC-AAAGCCCACACGA-GTTGGTGGCACCCTTTAGTC
*
1331607 CTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTTGTGGCACCCTTT
129 CTCAAAGAGCAGGACGCCTTTTT-CTTTCAAAGCCCACACGAGTTGGTGGCACCCTTT
* * * ** * *
1331665 AGTTCTCAAAGAGCACGATGCCTTTTTCCTTTCAAAGCCCACGTGAGTCGGTGGCACCCTTCAGT
1 AGTCCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGT
* * * * *
1331730 CCTCAAAGACCAAGATGCCTTTTTCCTTTCAAAGTCCACACGAGTTGGTGGCACCCTTTAGTCTT
66 CCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGTCCT
* *
1331795 CAAAGAGCAGGATGCCTTTTTCGTTTCAAAGCCCACATG-GTTGGTGGCACCCTTT
131 CAAAGAGCAGGACGCCTTTTTC-TTTCAAAGCCCACACGAGTTGGTGGCACCCTTT
* * * *
1331850 AGTCCTTAAAGAGCATGG-CACCATTTTCCTTTCAAAGCCCACACGAGTTGATGGCACCCTTTAG
1 AGTCCTCAAAGAGCA-GGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAG
*** * * * * * *
1331914 TCCGGGAAGAGGAGGACACTTTTTTCCTTTCAAAGCCCACACGAGTTTGTAGCACCCTTTAGTCT
65 TCCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGTCC
* * * * * *
1331979 TCAAAGTGTAGGATGCCTTTTTCTTTTCAAAGCCCACATGAGTTTGTGGCACACTTT
130 TCAAAGAGCAGGACGCCTTTTTC-TTTCAAAGCCCACACGAGTTGGTGGCACCCTTT
* * * * * **** * *
1332036 AGTTCTCAAAGAGCAGGATC-CCTTTTTCGTTTCAAAACCCACATGGGTTGGTGTTTTCATTTTG
1 AGTCCTCAAAGAGCAGGA-CGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAG
* * ** * *
1332100 TCCTCAAAGAGTAGGACACCTTTTTTTTTTCAAAGCCCACAAGTA-TTGGTGGCACCTTTTAGTC
65 TCCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACG-AGTTGGTGGCACCCTTTAGTC
* * * * * * ** *
1332164 CTCAATGAGCAGGACGCCTTTCTCCCTTCAAAGCTCATACGTGTTTATGGCACCCTTA
129 CTCAAAGAGCAGGACGCCTTT-TTCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTT
* * * * * *
1332222 AGTTCTCAAAGAGCAGGATGCTTTTTTCCTTTCAAAGCCCACGCAAGTTGGTGGCACCCTTCAGT
1 AGTCCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGT
* * * *
1332287 CCTCAAAGAGCAGGACGTCTTTTTCCTTTCAAAGCCCACGCAAGTTGGTGGCACCCTTCAGTCCT
66 CCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGTCCT
*
1332352 CAAAGAGCAGGACGGCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTT
131 CAAAGAGCAGGACGCCTTTTT-CTTTCAAAGCCCACACGAGTTGGTGGCACCCTTT
* * * * * *
1332408 AGTCTTCAAGGAGTAGGATGCCTTTGTCCTTTCAAAGCCCACATGAGTTGGTGGCA-CCTTTAGT
1 AGTCCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGT
* * * * * * * * *
1332472 CCTCGAAGTGAAGGACACCTTTTTCCTTTGAAAGCCCACACGCGTCGATGGCACCTTTTAG-CCT
66 CCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGTCC-
* * * *
1332536 TCAATGAGCATGACACCTTTTTCTTTTCAAAGCCCACTCGAGTTGGTGGCACCCTTT
130 TCAAAGAGCAGGACGCCTTTTTC-TTTCAAAGCCCACACGAGTTGGTGGCACCCTTT
* * * * * *
1332593 AGTCCTCAAAGAGCAGGACGCCTTTTTTCTTTCAAAGCCCACGCGAGTTGGTCGCTCTCTTTAGC
1 AGTCCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGT
* * * * *
1332658 CCTCAAAGAGTAGGACACCTTTTTCCATTCAAAGCCCACACGAGTTGGTGGCTCCCTTTAATCCT
66 CCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGTCCT
* * * * ** **
1332723 CAAAGTGCAGGATGCTTTTTTCTTTCAAAGCCCAAACGAGTTGACGGCATTCTTT
131 CAAAGAGCAGGACGCCTTTTTCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTT
* * * * * * * * * * *
1332778 TGTCTTGAAAAAGCATGACACTTTTTTCTTTTTAAAGCTCACAC-AGGTTGGGGGCACCCTTTAG
1 AGTCCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGA-GTTGGTGGCACCCTTTAG
* * ** * **
1332842 TCCTCAAAGAGCAGGACGTCTTTTTCCATTCAAAGTGCAAACGAGTTGGTGGCATTCTTTAGTCC
65 TCCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGTCC
* * * **
1332907 TCAAAGAGCAGGACGCTTTTTTCTTTCAAAGCCCAAACGAGTTGGTGGTATTCTTCT
130 TCAAAGAGCAGGACGCCTTTTTCTTTCAAAGCCCACACGAGTTGGTGGCACCCTT-T
* * * * * * * * *
1332964 -GTCCTCAAAGAGAAAGACACCTTTTTCCTTTCAAAGCTCGCATGGGTCGGTGGCTCCCTTTAG-
1 AGTCCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGT
* * * * * ** * *
1333027 CTCTTAAAAAGCAGGGCACCTTTTTCGTTTCAAAGCCCACACGAGTTGGTCTCTCCCTTTAGCCC
66 C-CTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGTCC
* * * * *
1333092 TCAAAGAGCAGGACACCTTTTTCCTTTCAATGCCCACACAACTTGGTGGCCCCCTTT
130 TCAAAGAGCAGGACGCCTTTTT-CTTTCAAAGCCCACACGAGTTGGTGGCACCCTTT
* * ** * *
1333149 AGTCCTTAAAGAGTAGGACATCTTTTTCCTTTCAATGCCCACACGAGTTGGTGGCA--CTCT--T
1 AGTCCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGT
* * *
1333210 CCTCAAAGAGTAGGACACCTTTTTCCTTTCAAAGCCCACACGGGTTGGTGGCACCCTTTAG---T
66 CCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGTCCT
* * *** * * *
1333272 C------CA-TA----TTTCT-TTTCAAAGCCTGGATGGGTTGGTGGCACCCTTC
131 CAAAGAGCAGGACGCCTTTTTCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTT
* * * * * * *
1333315 AGTCCTCAAAAAGCAGAATGCTTTTTTCCTTTCAAAGCCCACATGAGTTGGTGGCAGCCTTCAGT
1 AGTCCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGT
* * * * * * * * *
1333380 CCTCAAAGAGTAGGATGCC-TTTTCCGTTTCAAAACCCATATGGGTGGGTGGC-CTCAATTT-CT
66 CCTCAAAGAGCAGGACGCCTTTTTCC-TTTCAAAGCCCACACGAGTTGGTGGCAC-C-CTTTAGT
* * * * * *
1333442 CCTCCAAGAGTAGGACTCCTTTTTCCTTTCAAAGCCCATACGTGTCGGTGGCACCCTTT
128 CCTCAAAGAGCAGGACGCCTTTTT-CTTTCAAAGCCCACACGAGTTGGTGGCACCCTTT
* * *
1333501 AGTCCACAAAGAGCAGGATGCCTTTTTCCTTTCAAAGCCCACACGAGTTTGTGGCACCCTTTAGT
1 AGTCCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGT
* ** * * * * * * *
1333566 TCTCAAAGAGCACAATGCCTTTCTCCTTTCAAAGGCCACGCAAGTTGGTGGTACCCTTCAGTCCT
66 CCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGTCCT
* * * *
1333631 CAAAGAGCAGAATGCTTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCAGCCTTT
131 CAAAGAGCAGGACGCCTTTTT-CTTTCAAAGCCCACACGAGTTGGTGGCACCCTTT
* * * * *
1333687 AGTCCTCAAAGAGCAGGATGCCTTTTTCATTTCAAAACCCACA-TAGGTTGGTGGC-CTCAATTT
1 AGTCCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGA-GTTGGTGGCAC-C-CTTT
* * * *
1333750 -GTCCTCCAAGAGTAGGATGCCTTTTTCTTTTCAAAGCCCACAC-ATGTTGGTGGCACCCTTTAG
63 AGTCCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGA-GTTGGTGGCACCCTTTAG
* * *
1333813 TCCAT-AAAGAGCAGGATGCCTTTTTCCTTTCAAAGCCCATACGAGTTTGTGGCACCCTTT
127 TCC-TCAAAGAGCAGGACGCCTTTTT-CTTTCAAAGCCCACACGAGTTGGTGGCACCCTTT
* ** * *
1333873 AGTTCTCAAAGAGCACTATGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGCCACCCTTTAGT
1 AGTCCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGT
* * *
1333938 CCTCAAAGAGCAGGACGCCTGTTTCCTTTCAAAGTCCACACGAGTTGATGGCACCCTTTAGTCCT
66 CCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGTCCT
* * *
1334003 CAAAAAGCAGGATGCCTTTTTCCTTTCCAAGCCCACACG-GTTGGTGGCACCCTTT
131 CAAAGAGCAGGACGCCTTTTT-CTTTCAAAGCCCACACGAGTTGGTGGCACCCTTT
* ***
1334058 AGTCCTTAAAGAGCAAGG-CGTGATTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAG
1 AGTCCTCAAAGAGC-AGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAG
** * * * *
1334122 TCCTGGAAGAGGAGGACACATTTTTTTCCTTTCAAAGCCCACACGAGTTTGTGGCACCCTTTAGT
65 TCCTCAAAGAGCAGGACGC--CTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGT
* * * * * *
1334187 CTTCAAAGAGTAGGATGCCTTTTTCTTTTCAAAGCCCACTCTAGTTGGTGGCACCTTTT
128 CCTCAAAGAGCAGGACGCCTTTTTC-TTTCAAAGCCCACACGAGTTGGTGGCACCCTTT
*
1334246 AGTCCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAG-CCACCACGAGTTGGTGGCAGCCTTTAG
1 AGTCCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCA-CACGAGTTGGTGGCACCCTTTAG
* * * * * * *
1334310 TTCTCAAAGAGTAGGAAG-CTTGTT--TTTCAAAGCTCACACGAGTTTGTGGCACCCTTTAGTTC
65 TCCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGTCC
* * * ** *
1334372 TCAAAGAGCAGGATGCCTTCTTCGTTTCAAAACCCGTACGGGTTGGTGGC-CCCATTT
130 TCAAAGAGCAGGACGCCTTTTTC-TTTCAAAGCCCACACGAGTTGGTGGCACCC-TTT
* * * * * * *
1334429 TGTCCTCAAAGAGTAGGACACCTTTTTCTTTTCAAAGCCCACAAGTGTTGGTGGCACCCTTTTGT
1 AGTCCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGT
* * * * * * * * *
1334494 CCTCAATGAGCAGGACGCCTTTTTCCTTTCAAAGCTCATATGTGTTTGTGGTACCCTTTTGTTCT
66 CCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGTCCT
* * * * *
1334559 CAAAGAGCAAGATGCATTTTTCCTTTCAAAGCCCACGCGAGTTGGTGGCACCCTTC
131 CAAAGAGCAGGACGCCTTTTT-CTTTCAAAGCCCACACGAGTTGGTGGCACCCTTT
* *
1334615 AGTCCTCAAAGAGTAGGACACCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGT
1 AGTCCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGT
* * * * * * *
1334680 CCTCGAAGTGAAGGACACCTTTTTCCTTTGAAAGCCCACATGAGTTGGTGGCACCCTTTAGTCTT
66 CCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGTCCT
* * **
1334745 CAAAGAGCAGGACACTTTTTTCTTTTCAAAGCCCACACGAGTTAATGGCACCCTTT
131 CAAAGAGCAGGACGCCTTTTTC-TTTCAAAGCCCACACGAGTTGGTGGCACCCTTT
* * * ** * * * * *
1334801 AGTCCTCAAAGAGCAAGATGCTTTTTTCCTTTCAAAGCTTACGCGAGTTGGTCGCTCTCTTTAGC
1 AGTCCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGT
* * * * *
1334866 CCTCAATGAGTAGGACACCTTTTTCCTTTCAAAGCCCACACGAGTTTGTGGCACCCTTTAGTTCT
66 CCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGTCCT
* * * *
1334931 CAAAGAGCAGGATGTCGTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTC
131 CAAAGAGCAGGACG-CCTTTTTCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTT
* * *
1334987 AGTCCTCAAAGAGCAGGACCCCTTTTTCCTTTCAATGCCCACAAGAGTTGGTGGCACCCTTTAGT
1 AGTCCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGT
* * * *
1335052 TCTCAAATAGCAGGACGCCTTTTTCCTTTCAAAGCCCGCA-TAGTT-GTGGCACCCTTTAGTCCT
66 CCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGTCCT
** * * *
1335115 CAAAGAGCAAAATGCCTTTTTCATTTCAAAACCCACACGAGTTGGTGGCACCCATT
131 CAAAGAGCAGGACGCCTTTTTC-TTTCAAAGCCCACACGAGTTGGTGGCACCCTTT
** * * *
1335171 AGTCCTTGAAGAGGAGGACACCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCTCCCTTTAGT
1 AGTCCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGT
* * * * * *
1335236 CTTCCAAGAGCAGGACGCCTTTTTCTTTTCAAAGCCTACTA-GAGTTGGTGGCAGCCTTTAATCC
66 CCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCAC-ACGAGTTGGTGGCACCCTTTAGTCC
* *
1335300 TCAAGGAGCAGGATGCCTTTTTTCCTTTCAAAGCCCAC
130 TCAAAGAGCAGGACGCC-TTTTT-CTTTCAAAGCCCAC
1335338 TGTCGTAACG
Statistics
Matches: 14993, Mismatches: 3132, Indels: 807
0.79 0.17 0.04
Matches are distributed among these distances:
166 69 0.00
168 6 0.00
169 7 0.00
170 41 0.00
171 3 0.00
172 1 0.00
173 4 0.00
179 3 0.00
180 1 0.00
181 7 0.00
182 672 0.04
183 462 0.03
184 845 0.06
185 3969 0.26
186 7521 0.50
187 836 0.06
188 271 0.02
189 3 0.00
190 9 0.00
191 15 0.00
192 10 0.00
193 2 0.00
194 13 0.00
195 21 0.00
196 20 0.00
197 6 0.00
198 21 0.00
199 155 0.01
ACGTcount: A:0.23, C:0.26, G:0.20, T:0.31
Consensus pattern (185 bp):
AGTCCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGT
CCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGTCCT
CAAAGAGCAGGACGCCTTTTTCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTT
Found at i:1317371 original size:99 final size:99
Alignment explanation
Indices: 1317265--1317557 Score: 282
Period size: 99 Copynumber: 2.9 Consensus size: 99
1317255 CAGGATACCT
* * * * *
1317265 TTTTTCCTTTCAAAACCCACACGTGTTGGTGGCAGCCTTTAGTCCTCAAAGAGCAAGTTGCCTTT
1 TTTTTCCTTTCAAAGCCCACACGAGTTGATGGCACCCTTTAGTCCTCAAAGAGCAAGATGCCTTT
* * * *
1317330 TTCCTTTTAAGGCCCACACGGGTCGGTGGCTCCC
66 TTCCTTTCAAAGCCCACACGAGTCGGTGGCACCC
* * * *
1317364 TTTTTCCTTTCAAAGCCCATACGAGTTTATGGCACCCTTTAGTTCTCAAAGAGCACGATGCCTTT
1 TTTTTCCTTTCAAAGCCCACACGAGTTGATGGCACCCTTTAGTCCTCAAAGAGCAAGATGCCTTT
* * *
1317429 TTCCTTTCAAAGCCTACACGAGTTGGTGGCAGCC
66 TTCCTTTCAAAGCCCACACGAGTCGGTGGCACCC
** * * * * * * * * ***
1317463 TTCAGTCCTTTCAAAGCCCACACCAGTTGGTCGCTCCTTTTAG-CACTCAAAAAGTAGGACAACT
1 TT-TTTCCTTTCAAAGCCCACACGAGTTGATGGCACCCTTTAGTC-CTCAAAGAGCAAGATGCCT
* *
1317527 TTTTCCTTTCAAAGCCCACAAGAGTTGGTGG
64 TTTTCCTTTCAAAGCCCACACGAGTCGGTGG
1317558 GTCCATTTAG
Statistics
Matches: 158, Mismatches: 34, Indels: 3
0.81 0.17 0.02
Matches are distributed among these distances:
99 85 0.54
100 73 0.46
ACGTcount: A:0.22, C:0.28, G:0.19, T:0.31
Consensus pattern (99 bp):
TTTTTCCTTTCAAAGCCCACACGAGTTGATGGCACCCTTTAGTCCTCAAAGAGCAAGATGCCTTT
TTCCTTTCAAAGCCCACACGAGTCGGTGGCACCC
Found at i:1322327 original size:99 final size:99
Alignment explanation
Indices: 1322221--1322513 Score: 300
Period size: 99 Copynumber: 2.9 Consensus size: 99
1322211 CAGGATACCT
* * * *
1322221 TTTTTCCTTTCAAAACCCACACGTGTTGGTGGCAGCCTTTAGTCCTCAAAGAGCAAGTTGCCTTT
1 TTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAAGATGCCTTT
* * * *
1322286 TTCCTTTTAAGGCCCACACGGGTCGGTGGCTCCC
66 TTCCTTTCAAAGCCCACACGAGTCGGTGGCACCC
* ** * *
1322320 TTTTTCCTTTCAAAGCCCATACGAGTTTATGGCACCCTTTAGTTCTCAAAGAGCACGATGCCTTT
1 TTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAAGATGCCTTT
* * *
1322385 TTCCTTTCAAAGCCTACACGAGTTGGTGGCAGCC
66 TTCCTTTCAAAGCCCACACGAGTCGGTGGCACCC
** * * * * * * ***
1322419 TTCAGTCCTTTCAAAGCCCACACGAGTTGGTCGCTCCTTTTAG-CACTCAAAAAGTAGGACAACT
1 TT-TTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGTC-CTCAAAGAGCAAGATGCCT
* *
1322483 TTTTCCTTTCAAAGCCCACAAGAGTTGGTGG
64 TTTTCCTTTCAAAGCCCACACGAGTCGGTGG
1322514 GTCCATTTAG
Statistics
Matches: 159, Mismatches: 33, Indels: 3
0.82 0.17 0.02
Matches are distributed among these distances:
99 85 0.53
100 74 0.47
ACGTcount: A:0.22, C:0.28, G:0.19, T:0.31
Consensus pattern (99 bp):
TTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAAGATGCCTTT
TTCCTTTCAAAGCCCACACGAGTCGGTGGCACCC
Found at i:1333379 original size:62 final size:62
Alignment explanation
Indices: 1333299--1335337 Score: 2264
Period size: 62 Copynumber: 32.9 Consensus size: 62
1333289 GCCTGGATGG
* * * * *
1333299 GTTGGTGGCACCCTTCAGTCCTCAAAAAGCAGAATGCTTTTTTCCTTTCAAAGCCCACATGA
1 GTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTTTCCTTTCAAAGCCCACACGA
* * * * * * *
1333361 GTTGGTGGCAGCCTTCAGTCCTCAAAGAGTAGGATGCC-TTTTCCGTTTCAAAACCCATATGG
1 GTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTTTCC-TTTCAAAGCCCACACGA
* * * * * * *
1333423 GTGGGTGGC-CTCAATTT-CTCCTCCAAGAGTAGGACT-CCTTTTTCCTTTCAAAGCCCATACGT
1 GTTGGTGGCAC-C-CTTTAGTCCTCAAAGAGCAGGA-TGCCTTTTTCCTTTCAAAGCCCACACGA
* *
1333485 GTCGGTGGCACCCTTTAGTCCACAAAGAGCAGGATGCCTTTTTCCTTTCAAAGCCCACACGA
1 GTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTTTCCTTTCAAAGCCCACACGA
* * ** * * * *
1333547 GTTTGTGGCACCCTTTAGTTCTCAAAGAGCACAATGCCTTTCTCCTTTCAAAGGCCACGCAA
1 GTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTTTCCTTTCAAAGCCCACACGA
* * * *
1333609 GTTGGTGGTACCCTTCAGTCCTCAAAGAGCAGAATGCTTTTTTCCTTTCAAAGCCCACACGA
1 GTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTTTCCTTTCAAAGCCCACACGA
* * * *
1333671 GTTGGTGGCAGCCTTTAGTCCTCAAAGAGCAGGATGCCTTTTTCATTTCAAAACCCACA-TA
1 GTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTTTCCTTTCAAAGCCCACACGA
* * * *
1333732 GGTTGGTGGC-CTCAATTT-GTCCTCCAAGAGTAGGATGCCTTTTTCTTTTCAAAGCCCACAC-A
1 -GTTGGTGGCAC-C-CTTTAGTCCTCAAAGAGCAGGATGCCTTTTTCCTTTCAAAGCCCACACGA
*
1333794 TGTTGGTGGCACCCTTTAGTCCAT-AAAGAGCAGGATGCCTTTTTCCTTTCAAAGCCCATACGA
1 -GTTGGTGGCACCCTTTAGTCC-TCAAAGAGCAGGATGCCTTTTTCCTTTCAAAGCCCACACGA
* * **
1333857 GTTTGTGGCACCCTTTAGTTCTCAAAGAGCACTATGCCTTTTTCCTTTCAAAGCCCACACGA
1 GTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTTTCCTTTCAAAGCCCACACGA
* * * *
1333919 GTTGGTGCCACCCTTTAGTCCTCAAAGAGCAGGACGCCTGTTTCCTTTCAAAGTCCACACGA
1 GTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTTTCCTTTCAAAGCCCACACGA
* * *
1333981 GTTGATGGCACCCTTTAGTCCTCAAAAAGCAGGATGCCTTTTTCCTTTCCAAGCCCACACG-
1 GTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTTTCCTTTCAAAGCCCACACGA
* * *
1334042 GTTGGTGGCACCCTTTAGTCCTTAAAGAGCAAGGCGTG--ATTTTCCTTTCAAAGCCCACACGA
1 GTTGGTGGCACCCTTTAGTCCTCAAAGAGC-AGG-ATGCCTTTTTCCTTTCAAAGCCCACACGA
** * ** *
1334104 GTTGGTGGCACCCTTTAGTCCTGGAAGAGGAGGACACATTTTTTTCCTTTCAAAGCCCACACGA
1 GTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGC--CTTTTTCCTTTCAAAGCCCACACGA
* * * * * *
1334168 GTTTGTGGCACCCTTTAGTCTTCAAAGAGTAGGATGCCTTTTTCTTTTCAAAGCCCACTCTA
1 GTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTTTCCTTTCAAAGCCCACACGA
* *
1334230 GTTGGTGGCACCTTTTAGTCCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAG-CCACCACGA
1 GTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTTTCCTTTCAAAGCCCA-CACGA
* * * * * *
1334292 GTTGGTGGCAGCCTTTAGTTCTCAAAGAGTAGGAAG-CTTGTT--TTTCAAAGCTCACACGA
1 GTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTTTCCTTTCAAAGCCCACACGA
* * * * * ** *
1334351 GTTTGTGGCACCCTTTAGTTCTCAAAGAGCAGGATGCCTTCTTCGTTTCAAAACCCGTACGG
1 GTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTTTCCTTTCAAAGCCCACACGA
* * ** * * *
1334413 GTTGGTGGC-CCCATTTTGTCCTCAAAGAGTAGGACACCTTTTTCTTTTCAAAGCCCACAAGT
1 GTTGGTGGCACCC-TTTAGTCCTCAAAGAGCAGGATGCCTTTTTCCTTTCAAAGCCCACACGA
* * * * * * *
1334475 GTTGGTGGCACCCTTTTGTCCTCAATGAGCAGGACGCCTTTTTCCTTTCAAAGCTCATATGT
1 GTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTTTCCTTTCAAAGCCCACACGA
* * * * * * *
1334537 GTTTGTGGTACCCTTTTGTTCTCAAAGAGCAAGATGCATTTTTCCTTTCAAAGCCCACGCGA
1 GTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTTTCCTTTCAAAGCCCACACGA
* * **
1334599 GTTGGTGGCACCCTTCAGTCCTCAAAGAGTAGGACACCTTTTTCCTTTCAAAGCCCACACGA
1 GTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTTTCCTTTCAAAGCCCACACGA
* * * ** * *
1334661 GTTGGTGGCACCCTTTAGTCCTCGAAGTGAAGGACACCTTTTTCCTTTGAAAGCCCACATGA
1 GTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTTTCCTTTCAAAGCCCACACGA
* ** * *
1334723 GTTGGTGGCACCCTTTAGTCTTCAAAGAGCAGGACACTTTTTTCTTTTCAAAGCCCACACGA
1 GTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTTTCCTTTCAAAGCCCACACGA
** * * ** *
1334785 GTTAATGGCACCCTTTAGTCCTCAAAGAGCAAGATGCTTTTTTCCTTTCAAAGCTTACGCGA
1 GTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTTTCCTTTCAAAGCCCACACGA
* * * * * * **
1334847 GTTGGTCGCTCTCTTTAGCCCTCAATGAGTAGGACACCTTTTTCCTTTCAAAGCCCACACGA
1 GTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTTTCCTTTCAAAGCCCACACGA
* * * *
1334909 GTTTGTGGCACCCTTTAGTTCTCAAAGAGCAGGATGTCGTTTTCCTTTCAAAGCCCACACGA
1 GTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTTTCCTTTCAAAGCCCACACGA
* ** * *
1334971 GTTGGTGGCACCCTTCAGTCCTCAAAGAGCAGGACCCCTTTTTCCTTTCAATGCCCACAAGA
1 GTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTTTCCTTTCAAAGCCCACACGA
* * * * *
1335033 GTTGGTGGCACCCTTTAGTTCTCAAATAGCAGGACGCCTTTTTCCTTTCAAAGCCCGCA-TA
1 GTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTTTCCTTTCAAAGCCCACACGA
** * *
1335094 GTT-GTGGCACCCTTTAGTCCTCAAAGAGCAAAATGCCTTTTTCATTTCAAAACCCACACGA
1 GTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTTTCCTTTCAAAGCCCACACGA
* ** * **
1335155 GTTGGTGGCACCCATTAGTCCTTGAAGAGGAGGACACCTTTTTCCTTTCAAAGCCCACACGA
1 GTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTTTCCTTTCAAAGCCCACACGA
* * * * * *
1335217 GTTGGTGGCTCCCTTTAGTCTTCCAAGAGCAGGACGCCTTTTTCTTTTCAAAGCCTACTA-GA
1 GTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTTTCCTTTCAAAGCCCAC-ACGA
* * *
1335279 GTTGGTGGCAGCCTTTAATCCTCAAGGAGCAGGATGCCTTTTTTCCTTTCAAAGCCCAC
1 GTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCC-TTTTTCCTTTCAAAGCCCAC
1335338 TGTCGTAACG
Statistics
Matches: 1661, Mismatches: 281, Indels: 69
0.83 0.14 0.03
Matches are distributed among these distances:
59 45 0.03
60 54 0.03
61 85 0.05
62 1384 0.83
63 40 0.02
64 53 0.03
ACGTcount: A:0.23, C:0.27, G:0.20, T:0.30
Consensus pattern (62 bp):
GTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTTTCCTTTCAAAGCCCACACGA
Found at i:1339457 original size:49 final size:47
Alignment explanation
Indices: 1339396--1339523 Score: 166
Period size: 49 Copynumber: 2.6 Consensus size: 47
1339386 TGTTAAAGAT
*
1339396 TGCCAATATGCTGATTCAAGGACAACGATATCGGACTTAAAGATGAAGG
1 TGCCAATATGCTGATTCAAGG-CAGCGATATCGGACTTAAAGAT-AAGG
* * * * *
1339445 TGCCAATGTGCTGATTCAAGGCTAGTGACATTGGTCTTAAAGATAAGG
1 TGCCAATATGCTGATTCAAGGC-AGCGATATCGGACTTAAAGATAAGG
1339493 TGCCAATATGCTGATTCAAGGCCAGCGATAT
1 TGCCAATATGCTGATTCAAGG-CAGCGATAT
1339524 TAGGCTTATG
Statistics
Matches: 68, Mismatches: 9, Indels: 5
0.83 0.11 0.06
Matches are distributed among these distances:
48 31 0.46
49 37 0.54
ACGTcount: A:0.32, C:0.17, G:0.25, T:0.26
Consensus pattern (47 bp):
TGCCAATATGCTGATTCAAGGCAGCGATATCGGACTTAAAGATAAGG
Found at i:1339465 original size:102 final size:97
Alignment explanation
Indices: 1339343--1339610 Score: 243
Period size: 87 Copynumber: 2.8 Consensus size: 97
1339333 TGAAGAAGAA
* *
1339343 TGCCAATGTGCTGAGACAAGGCCAGCAACATTGGGCTTAGGAATGTTAAAGATTGCCAATATGCT
1 TGCCAATGTGCTGAGACAAGGCCAGCAACATTGGGCTTA--AA-GAT-AAG-GTGCCAATATGCT
1339408 GATTCAAGGACAACGATATCGGACTTAAAGATGAAGG
61 GATTCAAGGACAACGATATCGGACTTAAAGATGAAGG
** * ** *
1339445 TGCCAATGTGCTGATTCAAGGCTAGTGACATTGGTCTTAAAGATAAGGTGCCAATATGCTGATTC
1 TGCCAATGTGCTGAGACAAGGCCAGCAACATTGGGCTTAAAGATAAGGTGCCAATATGCTGATTC
* * *
1339510 AAGGCCAGCGATATTAGG-C-T-----T--A--
66 AAGGACAACGATA-TCGGACTTAAAGATGAAGG
* ** * * *
1339532 TGCCAATGTGTTGATTCAAGGCCAGCAACATTGGTCTTAGAGACAAGGTGCCAATATGCTGATTC
1 TGCCAATGTGCTGAGACAAGGCCAGCAACATTGGGCTTAAAGATAAGGTGCCAATATGCTGATTC
*
1339597 AAGGCCAACGATAT
66 AAGGACAACGATAT
1339611 TGGGCTTGTG
Statistics
Matches: 147, Mismatches: 18, Indels: 18
0.80 0.10 0.10
Matches are distributed among these distances:
86 1 0.01
87 71 0.48
89 1 0.01
91 1 0.01
96 1 0.01
97 29 0.20
98 6 0.04
99 2 0.01
100 2 0.01
102 33 0.22
ACGTcount: A:0.31, C:0.18, G:0.25, T:0.25
Consensus pattern (97 bp):
TGCCAATGTGCTGAGACAAGGCCAGCAACATTGGGCTTAAAGATAAGGTGCCAATATGCTGATTC
AAGGACAACGATATCGGACTTAAAGATGAAGG
Found at i:1339511 original size:48 final size:48
Alignment explanation
Indices: 1339396--1339834 Score: 272
Period size: 48 Copynumber: 9.7 Consensus size: 48
1339386 TGTTAAAGAT
* * * * *
1339396 TGCCAATATGCTGATTCAAGGACAACGATATCGGACTTAAAGATGAAGG
1 TGCCAATATGCTGATTCAAGGCCAGCGACATTGGTCTTAAAGAT-AAGG
* * *
1339445 TGCCAATGTGCTGATTCAAGGCTAGTGACATTGGTCTTAAAGATAAGG
1 TGCCAATATGCTGATTCAAGGCCAGCGACATTGGTCTTAAAGATAAGG
*
1339493 TGCCAATATGCTGATTCAAGGCCAGCGATATTAGG-C-T-----T-A--
1 TGCCAATATGCTGATTCAAGGCCAGCGACATT-GGTCTTAAAGATAAGG
* * * * *
1339532 TGCCAATGTGTTGATTCAAGGCCAGCAACATTGGTCTTAGAGACAAGG
1 TGCCAATATGCTGATTCAAGGCCAGCGACATTGGTCTTAAAGATAAGG
* * *
1339580 TGCCAATATGCTGATTCAAGGCCAACGATATTGGGC-T-----T---G
1 TGCCAATATGCTGATTCAAGGCCAGCGACATTGGTCTTAAAGATAAGG
* * *** * *
1339619 TGCCAATGTGTTGATTCAAGGCCAAAAACATTGGTCTTAGAGACAAGG
1 TGCCAATATGCTGATTCAAGGCCAGCGACATTGGTCTTAAAGATAAGG
* * * * *
1339667 TGCCAATATGCTGATTCAAGGCCAACAATATAGGGC-T-----T---G
1 TGCCAATATGCTGATTCAAGGCCAGCGACATTGGTCTTAAAGATAAGG
* * *
1339706 TGCCAATGTGCTGATTCAAGGCCAGTGACATTGGTCTTAAAGA-CA-G
1 TGCCAATATGCTGATTCAAGGCCAGCGACATTGGTCTTAAAGATAAGG
* * * * * *
1339752 TGTCAGTATGCTGATTGAAGGCCAGCGATATTGGGTTTTAAAGATAAAAG
1 TGCCAATATGCTGATTCAAGGCCAGCGACATT-GGTCTTAAAGAT-AAGG
* *
1339802 TGCCAATATGCTGGTTCAAGGCCAGCGATATTG
1 TGCCAATATGCTGATTCAAGGCCAGCGACATTG
1339835 AACTTAGAAG
Statistics
Matches: 301, Mismatches: 57, Indels: 64
0.71 0.14 0.15
Matches are distributed among these distances:
38 2 0.01
39 90 0.30
40 3 0.01
41 1 0.00
42 1 0.00
46 28 0.09
47 13 0.04
48 94 0.31
49 40 0.13
50 29 0.10
ACGTcount: A:0.30, C:0.18, G:0.26, T:0.27
Consensus pattern (48 bp):
TGCCAATATGCTGATTCAAGGCCAGCGACATTGGTCTTAAAGATAAGG
Found at i:1339547 original size:39 final size:38
Alignment explanation
Indices: 1339493--1339642 Score: 120
Period size: 39 Copynumber: 3.6 Consensus size: 38
1339483 AAAGATAAGG
1339493 TGCCAATATGCTGATTCAAGGCCAGCGATATTAGGCTTA
1 TGCCAATATGCTGATTCAAGGCCAGCGATATT-GGCTTA
* * * *
1339532 TGCCAATGTGTTGATTCAAGGCCAGCAACATTGGTCTTAGAGACAA
1 TGCCAATATGCTGATTCAAGGCCAGCGATATTGG-CTT-------A
* *
1339578 GGTGCCAATATGCTGATTCAAGGCCAACGATATTGGGCTTG
1 --TGCCAATATGCTGATTCAAGGCCAGCGATATT-GGCTTA
* *
1339619 TGCCAATGTGTTGATTCAAGGCCA
1 TGCCAATATGCTGATTCAAGGCCA
1339643 AAAACATTGG
Statistics
Matches: 88, Mismatches: 12, Indels: 22
0.72 0.10 0.18
Matches are distributed among these distances:
38 2 0.02
39 53 0.60
46 1 0.01
48 30 0.34
49 2 0.02
ACGTcount: A:0.27, C:0.20, G:0.25, T:0.27
Consensus pattern (38 bp):
TGCCAATATGCTGATTCAAGGCCAGCGATATTGGCTTA
Found at i:1339591 original size:87 final size:87
Alignment explanation
Indices: 1339444--1339783 Score: 479
Period size: 87 Copynumber: 3.9 Consensus size: 87
1339434 AAAGATGAAG
* * *
1339444 GTGCCAATGTGCTGATTCAAGGCTAGTGACATTGGTCTTAAAGATAAGGTGCCAATATGCTGATT
1 GTGCCAATGTGCTGATTCAAGGCCAGTAACATTGGTCTTAAAGACAAGGTGCCAATATGCTGATT
*
1339509 CAAGGCCAGCGATATTAGGCTT
66 CAAGGCCAACGATATTAGGCTT
* * * *
1339531 ATGCCAATGTGTTGATTCAAGGCCAGCAACATTGGTCTTAGAGACAAGGTGCCAATATGCTGATT
1 GTGCCAATGTGCTGATTCAAGGCCAGTAACATTGGTCTTAAAGACAAGGTGCCAATATGCTGATT
*
1339596 CAAGGCCAACGATATTGGGCTT
66 CAAGGCCAACGATATTAGGCTT
* ** *
1339618 GTGCCAATGTGTTGATTCAAGGCCAAAAACATTGGTCTTAGAGACAAGGTGCCAATATGCTGATT
1 GTGCCAATGTGCTGATTCAAGGCCAGTAACATTGGTCTTAAAGACAAGGTGCCAATATGCTGATT
*
1339683 CAAGGCCAACAATA-TAGGGCTT
66 CAAGGCCAACGATATTA-GGCTT
* * *
1339705 GTGCCAATGTGCTGATTCAAGGCCAGTGACATTGGTCTTAAAGAC-A-GTGTCAGTATGCTGATT
1 GTGCCAATGTGCTGATTCAAGGCCAGTAACATTGGTCTTAAAGACAAGGTGCCAATATGCTGATT
* *
1339768 GAAGGCCAGCGATATT
66 CAAGGCCAACGATATT
1339784 GGGTTTTAAA
Statistics
Matches: 227, Mismatches: 24, Indels: 5
0.89 0.09 0.02
Matches are distributed among these distances:
85 26 0.11
86 3 0.01
87 198 0.87
ACGTcount: A:0.29, C:0.18, G:0.26, T:0.27
Consensus pattern (87 bp):
GTGCCAATGTGCTGATTCAAGGCCAGTAACATTGGTCTTAAAGACAAGGTGCCAATATGCTGATT
CAAGGCCAACGATATTAGGCTT
Found at i:1339643 original size:39 final size:39
Alignment explanation
Indices: 1339579--1339729 Score: 149
Period size: 39 Copynumber: 3.6 Consensus size: 39
1339569 TAGAGACAAG
*
1339579 GTGCCAATATGCTGATTCAAGGCCAACGATATTGGGCTT
1 GTGCCAATATGCTGATTCAAGGCCAACAATATTGGGCTT
* * * * *
1339618 GTGCCAATGTGTTGATTCAAGGCCAAAAACATTGGTCTT
1 GTGCCAATATGCTGATTCAAGGCCAACAATATTGGGCTT
*
1339657 AGAGACAAGGTGCCAATATGCTGATTCAAGGCCAACAATATAGGGCTT
1 ---------GTGCCAATATGCTGATTCAAGGCCAACAATATTGGGCTT
*
1339705 GTGCCAATGTGCTGATTCAAGGCCA
1 GTGCCAATATGCTGATTCAAGGCCA
1339730 GTGACATTGG
Statistics
Matches: 90, Mismatches: 13, Indels: 18
0.74 0.11 0.15
Matches are distributed among these distances:
39 57 0.63
48 33 0.37
ACGTcount: A:0.29, C:0.20, G:0.25, T:0.26
Consensus pattern (39 bp):
GTGCCAATATGCTGATTCAAGGCCAACAATATTGGGCTT
Found at i:1339823 original size:50 final size:47
Alignment explanation
Indices: 1339705--1339834 Score: 145
Period size: 50 Copynumber: 2.7 Consensus size: 47
1339695 TATAGGGCTT
* * * *
1339705 GTGCCAATGTGCTGATTCAAGGCCAGTGACATT-GGTCTTAAAGACA
1 GTGCCAATATGCTGATTCAAGGCCAGCGATATTGGGTCTTAAAGAAA
* * * *
1339751 GTGTCAGTATGCTGATTGAAGGCCAGCGATATTGGGTTTTAAAGATAAAA
1 GTGCCAATATGCTGATTCAAGGCCAGCGATATTGGGTCTTAAAG---AAA
*
1339801 GTGCCAATATGCTGGTTCAAGGCCAGCGATATTG
1 GTGCCAATATGCTGATTCAAGGCCAGCGATATTG
1339835 AACTTAGAAG
Statistics
Matches: 68, Mismatches: 12, Indels: 4
0.81 0.14 0.05
Matches are distributed among these distances:
46 27 0.40
47 9 0.13
50 32 0.47
ACGTcount: A:0.28, C:0.16, G:0.28, T:0.28
Consensus pattern (47 bp):
GTGCCAATATGCTGATTCAAGGCCAGCGATATTGGGTCTTAAAGAAA
Found at i:1339950 original size:29 final size:30
Alignment explanation
Indices: 1339862--1339956 Score: 108
Period size: 29 Copynumber: 3.3 Consensus size: 30
1339852 CACCAACTTG
* *
1339862 TGTGGGCTTTTGAAAGGGTTG-CATCAACT
1 TGTGGGCTTTTGAAAGGGTTGCCACCGACT
* *
1339891 TGTGTGCTTTTG-AA-GGTTGCCACTGACT
1 TGTGGGCTTTTGAAAGGGTTGCCACCGACT
*
1339919 TGTGGGC-TTTGAAAGGGGTGCCACCGACT
1 TGTGGGCTTTTGAAAGGGTTGCCACCGACT
*
1339948 TGTGAGCTT
1 TGTGGGCTT
1339957 ACAAGAAAAA
Statistics
Matches: 54, Mismatches: 8, Indels: 7
0.78 0.12 0.10
Matches are distributed among these distances:
27 9 0.17
28 15 0.28
29 29 0.54
30 1 0.02
ACGTcount: A:0.17, C:0.17, G:0.33, T:0.34
Consensus pattern (30 bp):
TGTGGGCTTTTGAAAGGGTTGCCACCGACT
Found at i:1339991 original size:34 final size:35
Alignment explanation
Indices: 1339930--1340000 Score: 81
Period size: 34 Copynumber: 2.1 Consensus size: 35
1339920 GTGGGCTTTG
* * * *
1339930 AAAGGGGTGCCACCGACTTGTGAGCTT-ACAAGAA
1 AAAGGGATGCCACAGACGTGTGAGCTTAAAAAGAA
* *
1339964 AAAGGGATGCCACAGAGGTGTGGGCTTAAAAAGAA
1 AAAGGGATGCCACAGACGTGTGAGCTTAAAAAGAA
1339999 AA
1 AA
1340001 GGTGCCACGG
Statistics
Matches: 30, Mismatches: 6, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
34 22 0.73
35 8 0.27
ACGTcount: A:0.38, C:0.15, G:0.31, T:0.15
Consensus pattern (35 bp):
AAAGGGATGCCACAGACGTGTGAGCTTAAAAAGAA
Found at i:1340034 original size:27 final size:27
Alignment explanation
Indices: 1339997--1340437 Score: 229
Period size: 34 Copynumber: 14.2 Consensus size: 27
1339987 GCTTAAAAAG
*
1339997 AAAA-GGTGCCACGGAATTGTGGACTT
1 AAAAGGGTGCCACGGAGTTGTGGACTT
1340023 AAAAGGGTGCCACGGAGTTGTGGACTT
1 AAAAGGGTGCCACGGAGTTGTGGACTT
1340050 AAAAGGGTGCCACGGAGTTGTGGACTT
1 AAAAGGGTGCCACGGAGTTGTGGACTT
*
1340077 AAAAGGGTGCCACGGGGTTGTGGACTT
1 AAAAGGGTGCCACGGAGTTGTGGACTT
*
1340104 AAAAGGAAAAAGAGTGCCACGGAGTTGTGGGCTT
1 AAAA-G-----G-GTGCCACGGAGTTGTGGACTT
*
1340138 AAAAGGAAAAAGAGTGCCACGGAGTTGTGGGCTT
1 AAAA-G-----G-GTGCCACGGAGTTGTGGACTT
* * *
1340172 AAAAGGAAAAAGAGTGCCACAGAGTTATGGGCTTT
1 AAAA-G-----G-GTGCCACGGAGTTGTGGAC-TT
1340207 AAAAAGAAGAAAGGTGCCACGGAGTTGTGGACTT
1 ---AA-AAG---GGTGCCACGGAGTTGTGGACTT
1340241 AAAAGGGTGCCACGGAGTTGTGGACTT
1 AAAAGGGTGCCACGGAGTTGTGGACTT
*
1340268 AAAAGGAAAAAGAGTGCCACGGAGTTGTGGGCTT
1 AAAA-G-----G-GTGCCACGGAGTTGTGGACTT
*
1340302 AAAAGGAAAAAGAGTGCCACAGAGTTGTAGG-CTT
1 AAAA-G-----G-GTGCCACGGAGTTGT-GGACTT
* *
1340336 AAAAGGAAAAAGAGTGCCACAGAGTTGTGGGCTTT
1 AAAA-G-----G-GTGCCACGGAGTTGTGGAC-TT
*
1340371 AAAAAGAAGAAAGGTGCCATGGAGTTGTGGACTT
1 ---AA-AAG---GGTGCCACGGAGTTGTGGACTT
1340405 AAAAGGGTGCCACGGAGTTGTGGACTT
1 AAAAGGGTGCCACGGAGTTGTGGACTT
1340432 AAAAGG
1 AAAAGG
1340438 AAAAAGAGTG
Statistics
Matches: 373, Mismatches: 15, Indels: 53
0.85 0.03 0.12
Matches are distributed among these distances:
26 4 0.01
27 131 0.35
28 2 0.01
30 6 0.02
31 4 0.01
33 4 0.01
34 166 0.45
35 38 0.10
36 8 0.02
38 6 0.02
39 4 0.01
ACGTcount: A:0.34, C:0.12, G:0.34, T:0.20
Consensus pattern (27 bp):
AAAAGGGTGCCACGGAGTTGTGGACTT
Found at i:1340121 original size:34 final size:34
Alignment explanation
Indices: 1340077--1340538 Score: 605
Period size: 34 Copynumber: 13.9 Consensus size: 34
1340067 TTGTGGACTT
* * *
1340077 AAAAGGGTGCCACGGGGTTGTGGACTTAAAAGGA
1 AAAAGAGTGCCACGGAGTTGTGGGCTTAAAAGGA
1340111 AAAAGAGTGCCACGGAGTTGTGGGCTTAAAAGGA
1 AAAAGAGTGCCACGGAGTTGTGGGCTTAAAAGGA
1340145 AAAAGAGTGCCACGGAGTTGTGGGCTTAAAAGGA
1 AAAAGAGTGCCACGGAGTTGTGGGCTTAAAAGGA
* * *
1340179 AAAAGAGTGCCACAGAGTTATGGGCTTTAAAAAGA
1 AAAAGAGTGCCACGGAGTTGTGGGC-TTAAAAGGA
*
1340214 AGAAAG-GTGCCACGGAGTTGTGGACTTAAAA-G-
1 A-AAAGAGTGCCACGGAGTTGTGGGCTTAAAAGGA
*
1340246 ----G-GTGCCACGGAGTTGTGGACTTAAAAGGA
1 AAAAGAGTGCCACGGAGTTGTGGGCTTAAAAGGA
1340275 AAAAGAGTGCCACGGAGTTGTGGGCTTAAAAGGA
1 AAAAGAGTGCCACGGAGTTGTGGGCTTAAAAGGA
* *
1340309 AAAAGAGTGCCACAGAGTTGTAGGCTTAAAAGGA
1 AAAAGAGTGCCACGGAGTTGTGGGCTTAAAAGGA
* *
1340343 AAAAGAGTGCCACAGAGTTGTGGGCTTTAAAAAGA
1 AAAAGAGTGCCACGGAGTTGTGGGC-TTAAAAGGA
* *
1340378 AGAAAG-GTGCCATGGAGTTGTGGACTTAAAA-G-
1 A-AAAGAGTGCCACGGAGTTGTGGGCTTAAAAGGA
*
1340410 ----G-GTGCCACGGAGTTGTGGACTTAAAAGGA
1 AAAAGAGTGCCACGGAGTTGTGGGCTTAAAAGGA
1340439 AAAAGAGTGCCACGGAGTTGTGGGCTTAAAAGGA
1 AAAAGAGTGCCACGGAGTTGTGGGCTTAAAAGGA
*
1340473 AAAAGAGTGCCACAGAGTTGTGGGCTTAAAAGGA
1 AAAAGAGTGCCACGGAGTTGTGGGCTTAAAAGGA
* *
1340507 AAAAGAGTGCCACGGAGCTGTGGTCTTTAAAA
1 AAAAGAGTGCCACGGAGTTGTGGGC-TTAAAA
1340539 AAGAAAAAAG
Statistics
Matches: 386, Mismatches: 23, Indels: 37
0.87 0.05 0.08
Matches are distributed among these distances:
27 51 0.13
28 2 0.01
33 4 0.01
34 265 0.69
35 56 0.15
36 8 0.02
ACGTcount: A:0.35, C:0.12, G:0.33, T:0.19
Consensus pattern (34 bp):
AAAAGAGTGCCACGGAGTTGTGGGCTTAAAAGGA
Found at i:1340235 original size:164 final size:164
Alignment explanation
Indices: 1340055--1340569 Score: 906
Period size: 164 Copynumber: 3.1 Consensus size: 164
1340045 GACTTAAAAG
*
1340055 GGTGCCACGGAGTTGTGGACTTAAAAGGGTGCCACGGGGTTGTGGACTTAAAAGGAAAAAGAGTG
1 GGTGCCACGGAGTTGTGGACTTAAAAGGGTGCCACGGAGTTGTGGACTTAAAAGGAAAAAGAGTG
*
1340120 CCACGGAGTTGTGGGCTTAAAAGGAAAAAGAGTGCCACGGAGTTGTGGGCTTAAAAGGAAAAAGA
66 CCACGGAGTTGTGGGCTTAAAAGGAAAAAGAGTGCCACAGAGTTGTGGGCTTAAAAGGAAAAAGA
*
1340185 GTGCCACAGAGTTATGGGCTTTAAAAAGAAGAAA
131 GTGCCACAGAGTTGTGGGCTTTAAAAAGAAGAAA
1340219 GGTGCCACGGAGTTGTGGACTTAAAAGGGTGCCACGGAGTTGTGGACTTAAAAGGAAAAAGAGTG
1 GGTGCCACGGAGTTGTGGACTTAAAAGGGTGCCACGGAGTTGTGGACTTAAAAGGAAAAAGAGTG
*
1340284 CCACGGAGTTGTGGGCTTAAAAGGAAAAAGAGTGCCACAGAGTTGTAGGCTTAAAAGGAAAAAGA
66 CCACGGAGTTGTGGGCTTAAAAGGAAAAAGAGTGCCACAGAGTTGTGGGCTTAAAAGGAAAAAGA
1340349 GTGCCACAGAGTTGTGGGCTTTAAAAAGAAGAAA
131 GTGCCACAGAGTTGTGGGCTTTAAAAAGAAGAAA
*
1340383 GGTGCCATGGAGTTGTGGACTTAAAAGGGTGCCACGGAGTTGTGGACTTAAAAGGAAAAAGAGTG
1 GGTGCCACGGAGTTGTGGACTTAAAAGGGTGCCACGGAGTTGTGGACTTAAAAGGAAAAAGAGTG
1340448 CCACGGAGTTGTGGGCTTAAAAGGAAAAAGAGTGCCACAGAGTTGTGGGCTTAAAAGGAAAAAGA
66 CCACGGAGTTGTGGGCTTAAAAGGAAAAAGAGTGCCACAGAGTTGTGGGCTTAAAAGGAAAAAGA
* * * *
1340513 GTGCCACGGAGCTGTGGTCTTTAAAAAAGAAAAAA
131 GTGCCACAGAGTTGTGGGCTTT-AAAAAGAAGAAA
* *
1340548 GG-GGCAGCGGAGTTATGGACTT
1 GGTGCCA-CGGAGTTGTGGACTT
1340570 TCAAAAGAAA
Statistics
Matches: 336, Mismatches: 13, Indels: 3
0.95 0.04 0.01
Matches are distributed among these distances:
164 310 0.92
165 26 0.08
ACGTcount: A:0.35, C:0.12, G:0.34, T:0.19
Consensus pattern (164 bp):
GGTGCCACGGAGTTGTGGACTTAAAAGGGTGCCACGGAGTTGTGGACTTAAAAGGAAAAAGAGTG
CCACGGAGTTGTGGGCTTAAAAGGAAAAAGAGTGCCACAGAGTTGTGGGCTTAAAAGGAAAAAGA
GTGCCACAGAGTTGTGGGCTTTAAAAAGAAGAAA
Found at i:1340537 original size:130 final size:129
Alignment explanation
Indices: 1339936--1340538 Score: 617
Period size: 130 Copynumber: 4.7 Consensus size: 129
1339926 TTTGAAAGGG
* * * * *
1339936 GTGCCACCGACTTGTGAGCTTACAAGAAAAAGGGATGCCACAGAGGTGTGGGCTTAAAAAG-AAA
1 GTGCCACAGAGTTGTGGGCTTAAAAGAAAAA-GG-TGCCACAGAGTTGTGGGCTTAAAAAGAAAA
*
1340000 AGGTGCCACGGAATTGTGGACTTAAAA-G-G-GTGCCACGGAGTTGTGGACTTAAAA-G-----G
64 AGGTGCCACGGAGTTGTGGACTTAAAAGGAGAGTGCCACGGAGTTGTGGACTTAAAAGGAAAAAG
1340056 -
129 A
* * * * * *
1340056 GTGCCACGGAGTTGTGGACTTAAAAG-----GGTGCCACGGGGTTGTGGACTTAAAAGGAAAAAG
1 GTGCCACAGAGTTGTGGGCTTAAAAGAAAAAGGTGCCACAGAGTTGTGGGCTTAAAAAGAAAAAG
* *
1340116 AGTGCCACGGAGTTGTGGGCTTAAAAGGAAAAAGAGTGCCACGGAGTTGTGGGCTTAAAAGGAAA
66 -GTGCCACGGAGTTGTGGACTTAAAAGG----AGAGTGCCACGGAGTTGTGGACTTAAAAGGAAA
1340181 AAGA
126 AAGA
* * *
1340185 GTGCCACAGAGTTATGGGCTTTAAAAAGAAGAAAGGTGCCACGGAGTTGTGGACTT-AAAAG---
1 GTGCCACAGAGTTGTGGGC-TT-AAAAGAA-AAAGGTGCCACAGAGTTGTGGGCTTAAAAAGAAA
*
1340246 --GGTGCCACGGAGTTGTGGACTTAAAAGGAAAAAGAGTGCCACGGAGTTGTGGGCTTAAAAGGA
63 AAGGTGCCACGGAGTTGTGGACTTAAAAGG----AGAGTGCCACGGAGTTGTGGACTTAAAAGGA
1340309 AAAAGA
124 AAAAGA
*
1340315 GTGCCACAGAGTTGTAGGCTTAAAAGGAAAAAGAGTGCCACAGAGTTGTGGGCTTTAAAAAGAAG
1 GTGCCACAGAGTTGTGGGCTTAAAA-GAAAAAG-GTGCCACAGAGTTGTGGGC-TTAAAAAGAA-
*
1340380 AAAGGTGCCATGGAGTTGTGGACTTAAAA-G-G-GTGCCACGGAGTTGTGGACTTAAAAGGAAAA
62 AAAGGTGCCACGGAGTTGTGGACTTAAAAGGAGAGTGCCACGGAGTTGTGGACTTAAAAGGAAAA
1340442 AGA
127 AGA
* *
1340445 GTGCCACGGAGTTGTGGGCTTAAAAGGAAAAAGAGTGCCACAGAGTTGTGGGCTTAAAAGGAAAA
1 GTGCCACAGAGTTGTGGGCTTAAAA-GAAAAAG-GTGCCACAGAGTTGTGGGCTTAAAAAGAAAA
* *
1340510 AGAGTGCCACGGAGCTGTGGTCTTTAAAA
64 AG-GTGCCACGGAGTTGTGGAC-TTAAAA
1340539 AAGAAAAAAG
Statistics
Matches: 416, Mismatches: 31, Indels: 62
0.82 0.06 0.12
Matches are distributed among these distances:
113 21 0.05
114 7 0.02
115 23 0.06
116 1 0.00
120 21 0.05
121 1 0.00
122 24 0.06
123 1 0.00
128 13 0.03
129 63 0.15
130 178 0.43
131 12 0.03
136 5 0.01
137 46 0.11
ACGTcount: A:0.34, C:0.13, G:0.33, T:0.19
Consensus pattern (129 bp):
GTGCCACAGAGTTGTGGGCTTAAAAGAAAAAGGTGCCACAGAGTTGTGGGCTTAAAAAGAAAAAG
GTGCCACGGAGTTGTGGACTTAAAAGGAGAGTGCCACGGAGTTGTGGACTTAAAAGGAAAAAGA
Found at i:1340605 original size:34 final size:34
Alignment explanation
Indices: 1340077--1340603 Score: 590
Period size: 34 Copynumber: 15.8 Consensus size: 34
1340067 TTGTGGACTT
* *
1340077 AAAAGGGTGCCACGGGGTTGTGGACTTAAAAGGA
1 AAAAGAGTGCCACGGAGTTGTGGACTTAAAAGGA
*
1340111 AAAAGAGTGCCACGGAGTTGTGGGCTTAAAAGGA
1 AAAAGAGTGCCACGGAGTTGTGGACTTAAAAGGA
*
1340145 AAAAGAGTGCCACGGAGTTGTGGGCTTAAAAGGA
1 AAAAGAGTGCCACGGAGTTGTGGACTTAAAAGGA
* * * *
1340179 AAAAGAGTGCCACAGAGTTATGGGCTTTAAAAAGA
1 AAAAGAGTGCCACGGAGTTGTGGAC-TTAAAAGGA
1340214 AGAAAG-GTGCCACGGAGTTGTGGACTTAAAA-G-
1 A-AAAGAGTGCCACGGAGTTGTGGACTTAAAAGGA
1340246 ----G-GTGCCACGGAGTTGTGGACTTAAAAGGA
1 AAAAGAGTGCCACGGAGTTGTGGACTTAAAAGGA
*
1340275 AAAAGAGTGCCACGGAGTTGTGGGCTTAAAAGGA
1 AAAAGAGTGCCACGGAGTTGTGGACTTAAAAGGA
*
1340309 AAAAGAGTGCCACAGAGTTGTAGG-CTTAAAAGGA
1 AAAAGAGTGCCACGGAGTTGT-GGACTTAAAAGGA
* * *
1340343 AAAAGAGTGCCACAGAGTTGTGGGCTTTAAAAAGA
1 AAAAGAGTGCCACGGAGTTGTGGAC-TTAAAAGGA
*
1340378 AGAAAG-GTGCCATGGAGTTGTGGACTTAAAA-G-
1 A-AAAGAGTGCCACGGAGTTGTGGACTTAAAAGGA
1340410 ----G-GTGCCACGGAGTTGTGGACTTAAAAGGA
1 AAAAGAGTGCCACGGAGTTGTGGACTTAAAAGGA
*
1340439 AAAAGAGTGCCACGGAGTTGTGGGCTTAAAAGGA
1 AAAAGAGTGCCACGGAGTTGTGGACTTAAAAGGA
* *
1340473 AAAAGAGTGCCACAGAGTTGTGGGCTTAAAAGGA
1 AAAAGAGTGCCACGGAGTTGTGGACTTAAAAGGA
* * *
1340507 AAAAGAGTGCCACGGAGCTGTGGTCTTTAAAAAAGA
1 AAAAGAGTGCCACGGAGTTGTGGAC-TT-AAAAGGA
* * *
1340543 AAAA-AGGGGCAGCGGAGTTATGGACTTTCAAAA-GA
1 AAAAGAGTGCCA-CGGAGTTGTGGAC-TT-AAAAGGA
* * *
1340578 AAAA-TGTGCCACAGACTTGTGGACTT
1 AAAAGAGTGCCACGGAGTTGTGGACTT
1340604 TCGAAGGTTG
Statistics
Matches: 436, Mismatches: 34, Indels: 47
0.84 0.07 0.09
Matches are distributed among these distances:
27 51 0.12
28 2 0.00
33 8 0.02
34 271 0.62
35 69 0.16
36 35 0.08
ACGTcount: A:0.36, C:0.12, G:0.33, T:0.19
Consensus pattern (34 bp):
AAAAGAGTGCCACGGAGTTGTGGACTTAAAAGGA
Found at i:1340616 original size:28 final size:28
Alignment explanation
Indices: 1340584--1340667 Score: 89
Period size: 28 Copynumber: 3.0 Consensus size: 28
1340574 AAGAAAAATG
* *
1340584 TGCCACAGACTTGTGGACTTTCGAAGGT
1 TGCCACAGACTTGTGGGCTTTCGAAGGA
* * *
1340612 TGCCACTGACTTGTGGGCTTTGGAAAAGA
1 TGCCACAGACTTGTGGGCTTTCG-AAGGA
*
1340641 TGCCACTA-ACTTGTGGGCTTTTGAAGG
1 TGCCAC-AGACTTGTGGGCTTTCGAAGG
1340668 GTGAGGAACG
Statistics
Matches: 46, Mismatches: 8, Indels: 4
0.79 0.14 0.07
Matches are distributed among these distances:
28 23 0.50
29 23 0.50
ACGTcount: A:0.21, C:0.19, G:0.30, T:0.30
Consensus pattern (28 bp):
TGCCACAGACTTGTGGGCTTTCGAAGGA
Found at i:1342123 original size:25 final size:23
Alignment explanation
Indices: 1342088--1342201 Score: 106
Period size: 25 Copynumber: 4.7 Consensus size: 23
1342078 CCGGACCCTT
*
1342088 TTTGTTGTTTTTTTTTTGGTTTTG
1 TTTGTT-TTTTTTTTTTGTTTTTG
*
1342112 TTTGTCTCTTTTTTTTTTGTTTTTT
1 TTTGT-T-TTTTTTTTTTGTTTTTG
*
1342137 TTTGTTTTTTTTGTTATTTTTTTTG
1 TTTGTTTTTTTT-TT-TTGTTTTTG
*
1342162 TTTGTTTTTTTTTTCTTCTTCTTT-
1 TTTGTTTTTTTTTT-TTGTT-TTTG
1342186 TTT-TTTCTTTTTTTTT
1 TTTGTTT-TTTTTTTTT
1342202 ACGGAGGACG
Statistics
Matches: 78, Mismatches: 7, Indels: 11
0.81 0.07 0.11
Matches are distributed among these distances:
23 11 0.14
24 24 0.31
25 43 0.55
ACGTcount: A:0.01, C:0.05, G:0.10, T:0.84
Consensus pattern (23 bp):
TTTGTTTTTTTTTTTTGTTTTTG
Found at i:1342124 original size:34 final size:32
Alignment explanation
Indices: 1342085--1342201 Score: 96
Period size: 34 Copynumber: 3.6 Consensus size: 32
1342075 CATCCGGACC
1342085 CTTTTTGTTGTTTTTTTTTTGGTTTTGTTTGTCT
1 CTTTTT-TTGTTTTTTTTTTGGTTTTGTTTGT-T
* * *
1342119 CTTTTTTTTTTGTTTTTTTTTGTTTTTTTTGTT
1 CTTTTTTTGTT-TTTTTTTTGGTTTTGTTTGTT
* * * *
1342152 ATTTTTTTTGTTTGTTTTTT--TTTT-CTTCTT
1 -CTTTTTTTGTTTTTTTTTTGGTTTTGTTTGTT
*
1342182 CTTTTTTTTTCTTTTTTTTT
1 CTTTTTTTGT-TTTTTTTTT
1342202 ACGGAGGACG
Statistics
Matches: 69, Mismatches: 11, Indels: 10
0.77 0.12 0.11
Matches are distributed among these distances:
29 8 0.12
30 12 0.17
31 4 0.06
33 12 0.17
34 33 0.48
ACGTcount: A:0.01, C:0.06, G:0.09, T:0.84
Consensus pattern (32 bp):
CTTTTTTTGTTTTTTTTTTGGTTTTGTTTGTT
Found at i:1342126 original size:1 final size:1
Alignment explanation
Indices: 1342120--1342201 Score: 74
Period size: 1 Copynumber: 82.0 Consensus size: 1
1342110 TGTTTGTCTC
* * * * * * * * *
1342120 TTTTTTTTTTGTTTTTTTTTGTTTTTTTTGTTATTTTTTTTGTTTGTTTTTTTTTTCTTCTTCTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
*
1342185 TTTTTTTCTTTTTTTTT
1 TTTTTTTTTTTTTTTTT
1342202 ACGGAGGACG
Statistics
Matches: 61, Mismatches: 20, Indels: 0
0.75 0.25 0.00
Matches are distributed among these distances:
1 61 1.00
ACGTcount: A:0.01, C:0.05, G:0.06, T:0.88
Consensus pattern (1 bp):
T
Found at i:1342135 original size:35 final size:34
Alignment explanation
Indices: 1342086--1342174 Score: 108
Period size: 35 Copynumber: 2.5 Consensus size: 34
1342076 ATCCGGACCC
*
1342086 TTTTTGTTGTTTTTTTTTTGGTTTTGTTTGTCT-CTT
1 TTTTTTTTG-TTTTTTTTT-GTTTTGTTTGT-TACTT
* *
1342122 TTTTTTTTGTTTTTTTTTGTTTTTTTTGTTATTT
1 TTTTTTTTGTTTTTTTTTGTTTTGTTTGTTACTT
1342156 TTTTTGTTTGTTTTTTTTT
1 TTTTT-TTTGTTTTTTTTT
1342175 TCTTCTTCTT
Statistics
Matches: 48, Mismatches: 3, Indels: 5
0.86 0.05 0.09
Matches are distributed among these distances:
33 1 0.02
34 17 0.35
35 22 0.46
36 8 0.17
ACGTcount: A:0.01, C:0.02, G:0.12, T:0.84
Consensus pattern (34 bp):
TTTTTTTTGTTTTTTTTTGTTTTGTTTGTTACTT
Found at i:1342162 original size:46 final size:46
Alignment explanation
Indices: 1342086--1342175 Score: 119
Period size: 46 Copynumber: 2.0 Consensus size: 46
1342076 ATCCGGACCC
*
1342086 TTTTTGTTGTTTTTTTTTTGGTTTTGTTTGTCTCTTTTTTTTTTGT
1 TTTTTGTTGTTTTTTTTTTGATTTTGTTTGTCTCTTTTTTTTTTGT
* * * *
1342132 TTTTTTTTGTTTTTTTTGTT-ATTTTTTTTGTTTGTTTTTTTTTT
1 TTTTTGTTGTTTTTTTT-TTGATTTTGTTTGTCTCTTTTTTTTTT
1342176 CTTCTTCTTT
Statistics
Matches: 38, Mismatches: 5, Indels: 2
0.84 0.11 0.04
Matches are distributed among these distances:
46 36 0.95
47 2 0.05
ACGTcount: A:0.01, C:0.02, G:0.12, T:0.84
Consensus pattern (46 bp):
TTTTTGTTGTTTTTTTTTTGATTTTGTTTGTCTCTTTTTTTTTTGT
Found at i:1342191 original size:46 final size:43
Alignment explanation
Indices: 1342095--1342191 Score: 104
Period size: 46 Copynumber: 2.2 Consensus size: 43
1342085 CTTTTTGTTG
* * *
1342095 TTTTTTTTTTGGTTTTGTTTGTCTCTTTTTTTTTTGTTTTTTT
1 TTTTTTTTTTGATTTTGTTTGTCTCTTTTTTTTTTCTTTTCTT
* * *
1342138 TTGTTTTTTTTGTTATTTTTTTTGTTTGTTTTTTTTTTCTTCTTCTT
1 TT-TTTTTTTTG--ATTTTGTTTGTCTCTTTTTTTTTTCTT-TTCTT
1342185 TTTTTTT
1 TTTTTTT
1342192 CTTTTTTTTT
Statistics
Matches: 44, Mismatches: 6, Indels: 5
0.80 0.11 0.09
Matches are distributed among these distances:
43 2 0.05
44 9 0.20
46 27 0.61
47 6 0.14
ACGTcount: A:0.01, C:0.05, G:0.09, T:0.85
Consensus pattern (43 bp):
TTTTTTTTTTGATTTTGTTTGTCTCTTTTTTTTTTCTTTTCTT
Found at i:1342195 original size:10 final size:10
Alignment explanation
Indices: 1342086--1342201 Score: 87
Period size: 10 Copynumber: 11.5 Consensus size: 10
1342076 ATCCGGACCC
1342086 TTTTTGTTGTT
1 TTTTTGTT-TT
*
1342097 TTTTT-TTTG
1 TTTTTGTTTT
* *
1342106 GTTTTGTTTG
1 TTTTTGTTTT
* *
1342116 TCTCT-TTTT
1 TTTTTGTTTT
1342125 TTTTTGTTTT
1 TTTTTGTTTT
1342135 TTTTTG-TTT
1 TTTTTGTTTT
1342144 TTTTTGTTATTT
1 TTTTTG-T-TTT
1342156 TTTTTGTTTGT
1 TTTTTGTTT-T
1342167 TTTTT-TTTT
1 TTTTTGTTTT
* *
1342176 CTTCTTCTTTT
1 -TTTTTGTTTT
*
1342187 TTTTTCTTTT
1 TTTTTGTTTT
1342197 TTTTT
1 TTTTT
1342202 ACGGAGGACG
Statistics
Matches: 87, Mismatches: 10, Indels: 17
0.76 0.09 0.15
Matches are distributed among these distances:
9 21 0.24
10 41 0.47
11 16 0.18
12 9 0.10
ACGTcount: A:0.01, C:0.05, G:0.09, T:0.84
Consensus pattern (10 bp):
TTTTTGTTTT
Found at i:1356138 original size:23 final size:23
Alignment explanation
Indices: 1356091--1356154 Score: 98
Period size: 23 Copynumber: 2.9 Consensus size: 23
1356081 CTTTGCCTGC
*
1356091 ATGTATCGATACAT-T--GAATG
1 ATGTATCGATACATCTGGGTATG
1356111 ATGTATCGATACATCTGGGTATG
1 ATGTATCGATACATCTGGGTATG
1356134 ATGTATCGATACATCTGGGTA
1 ATGTATCGATACATCTGGGTA
1356155 AAATTTCCAG
Statistics
Matches: 40, Mismatches: 1, Indels: 3
0.91 0.02 0.07
Matches are distributed among these distances:
20 14 0.35
21 1 0.03
23 25 0.62
ACGTcount: A:0.30, C:0.12, G:0.23, T:0.34
Consensus pattern (23 bp):
ATGTATCGATACATCTGGGTATG
Found at i:1356676 original size:62 final size:62
Alignment explanation
Indices: 1356579--1362586 Score: 5390
Period size: 62 Copynumber: 97.1 Consensus size: 62
1356569 CCCTCTTTGG
* * * * * * *
1356579 CCTTTAGTCCTCAAAGAGCAAGATGCCTTTTTCCTTTTAAAGCCTACACGGGTCGGTGGCTC
1 CCTTTAGTCCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCAC
* * * * * *
1356641 CCTTTAGCCCTCAAAAAGCAGGACACCTTTTTCCTTTCAAAGCCGACACGAGTTGGTCGCTC
1 CCTTTAGTCCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCAC
** * * * * * * *
1356703 TTTTTAGCCCTAAAAAAGTAGGACACCTTTTCCCTTTCAAAGCCCACACGAGTTGGTGGCTC
1 CCTTTAGTCCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCAC
* * * ** *
1356765 CCTTTAGTCCTCAAAGAGTATGACACCTTTTT-CTTT-TTA----A-A-G-GTTAGTGTG--C
1 CCTTTAGTCCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTG-GCAC
* * * * * *
1356817 CATTTTGTCCTCAAAGAGCAGGACACCTTTTTCTTTTCAAAGCCCGCACGTGTTGGTGGCAC
1 CCTTTAGTCCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCAC
* * * *
1356879 CCTTTAGTCCTCAAAGAACAGGACGCCCTTTTCCTTTCAAAGCCCACACAAATTGGTGGCAC
1 CCTTTAGTCCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCAC
* * * *
1356941 CCTTTAGTCCCCAAAGAGCAGAATGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCAT
1 CCTTTAGTCCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCAC
* * *
1357003 CCTTTAGTCCTCGAAGAGCAGGACACCTTTTTCCTTTCAAAGCCCACA-TAGTTGGTGGCAC
1 CCTTTAGTCCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCAC
** * * * * *
1357064 CCTTTAGTCCTTGAAGAGCAAGACACCTTTTTCCTTTTAAAACCCACACGAGTCGGTGGCAC
1 CCTTTAGTCCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCAC
** * * * * ** *
1357126 ATTTTAGTCTTTAAAGAGCAGGATGCCTTTTTCCTTTCAAAGCCCTCAC-AGGTCAGTGGCTC
1 CCTTTAGTCCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGA-GTTGGTGGCAC
* * * * * * * * * * * *
1357188 TCTTTAGCCCTTAAAAAGTAGGACACCTTTTTCCTTTCGAAGCACACATGAGTCGATGGCTC
1 CCTTTAGTCCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCAC
* * * ** * ** * *
1357250 CCTTTGGCCCTCAAAGAGTAGGATACCATTTTCCTTTTGAAGCCTACACGAGTTGGTGGCTC
1 CCTTTAGTCCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCAC
* * * *
1357312 TCTTTAGTCCTCAAAGAGTAGGATGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGAGGCAC
1 CCTTTAGTCCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCAC
* *** * * * * *
1357374 CCTTTAGTCCTTAAAGAATGGGATGCC-TTTTCCAATTCAAAGCCTACATGAGTTAGTGGCAC
1 CCTTTAGTCCTCAAAGAGCAGGACGCCTTTTTCC-TTTCAAAGCCCACACGAGTTGGTGGCAC
* * * * * *
1357436 CCTTTACTCCTCAAAGAGCCA-GAAGCTTTTTTCTTTTCAAAGCCCGCACGGGTTGGTGGCAC
1 CCTTTAGTCCTCAAAGAG-CAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCAC
* * * * * * *
1357498 CATTTTGTCCTCAAAGAG-AGGGACACCTTTTTCTTTTCAAA-CCTATATGAGTTGGTGGCAC
1 CCTTTAGTCCTCAAAGAGCA-GGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCAC
* * * * * *
1357559 CATTTAGTCTTCAAAGAGCAGGACGCCTTTTTCCATTCAAAGCCCACACGAATTGGTCGCTC
1 CCTTTAGTCCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCAC
* * * * *
1357621 CCTTTAGCCCTAAAAGAGCAGGACACCTTTTTCCTTTCAAAGCCCGCACGAGTTGGTGGCTC
1 CCTTTAGTCCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCAC
* * * ** * * *
1357683 CCTTTAGTCCTCAAATAGTAGGATGCCTTTTTCCTTTCAAAGTGCAAACGAGTTAGTGGCAA
1 CCTTTAGTCCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCAC
* * ** * *
1357745 TCTTTAGTCCTCAAAGAGCAGGAC-ACTTTTTTTTTTCAAAGCTCAAACGAGTTGGTGGCA-
1 CCTTTAGTCCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCAC
* * * *** * * * ** *
1357805 TCTTTCAGCCCTCAAAGAGTAGGACATTTTTTTTCTTTTTAAGGCTTACACGGGTTGGTGGCAC
1 CCTTT-AGTCCTCAAAGAGCAGGAC-GCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCAC
* * * * * *
1357869 CCTTTAGTCCTTAAAAAGCTA-GACGCCTTTTTCATTTCAAAGCTCACATGGGTTGGTGGCAC
1 CCTTTAGTCCTCAAAGAGC-AGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCAC
* * * * * * * *
1357931 CATTTTGTCCTCAAAGAGCAAGACACCTTTTTCTTTTCAAAGCCCATATGAGTTGGGGGCAC
1 CCTTTAGTCCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCAC
* * * * *
1357993 CATTTAGTCCTCAAAGAGCAGGATGCATTTTTCTTTTCAAAGCCCACATGAGTTGGTGGCAC
1 CCTTTAGTCCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCAC
* * * * * * ** *
1358055 CCTTTAGTCATCAAAAAGCAAGACGCCCTTTTCTTTTCAAAGCCCACACGGGTCAGTGGCGC
1 CCTTTAGTCCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCAC
** * * * *** * * **
1358117 TATTTTGTCCTTAAAGAGTAGGACATTTTTTTCTTTTCAAAGCCCGCACTTGTTGGTGGCAC
1 CCTTTAGTCCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCAC
* * *
1358179 CCTTTAGTCCTCAAAGAGCAGGATGCCTTTTTCTTTTCAAAGCCCACATGAGTTGGTGGCAC
1 CCTTTAGTCCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCAC
* * * * * * * *
1358241 CCTTTAGTCGTCGAAA-AGCAAGATGCCCTTTTCTTTTCAAAGCCCGCACAAATTGGTGGCAC
1 CCTTTAGTCCTC-AAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCAC
*
1358303 CCTTTAGTCCTCAAAGAGCAGGATGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCAC
1 CCTTTAGTCCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCAC
*
1358365 CCTTTAGTCCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCAAAC-AGTTGGTGGCAC
1 CCTTTAGTCCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCAC
* * * * * * *
1358426 CCTTCAGTCCTTAAAGAGCAAGACACCTTTTTTCTTTC-AAGACCCACGCGAGTCGGTGGCAC
1 CCTTTAGTCCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAG-CCCACACGAGTTGGTGGCAC
* * * ** * **** * * *
1358488 CTTTTAGACCTTAAAGAGCAGGATACCTTTTTCATTTCAAAGTTTGCACGGGTCGGTGGCTC
1 CCTTTAGTCCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCAC
* * * * * * * *
1358550 TCTTTAG-CACTTAAAAAGCAGGACACCTTTTTCCTTTCGAAGCCCACACGAGTCGATGGCTC
1 CCTTTAGTC-CTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCAC
* * * ** *
1358612 CCTTTAGCCCTCAAAGAGTAGGACACCTTTTTCCTTTTGAAGCCTACACGAGTTGGTGGCTA-
1 CCTTTAGTCCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGC-AC
* * * * * * *
1358674 TCATTAGTCCTCAAAGAGCAAGATGCCTTTTTCCTTTCAAAGTCCACATGAGTTGGAGGCAC
1 CCTTTAGTCCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCAC
* ** * *
1358736 CCTTTAGTCCTCAAAAAGTGGGATGCC-TTTTCCATTTCAAAGCCCACACAAGTTGGTGGCAC
1 CCTTTAGTCCTCAAAGAGCAGGACGCCTTTTTCC-TTTCAAAGCCCACACGAGTTGGTGGCAC
* ** * * * *
1358798 CTTTTTCTCCTCAAAGAGTC-GGAAGCCTTTTTCTTTTCAAAGCCCGCACGGGTTGGTGGCAC
1 CCTTTAGTCCTCAAAGAG-CAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCAC
** * * ** * * * *
1358860 AATTTTGTACTCAAAGAGGGGGACACCTTTTTCTTTTCAAAACCAACACGAGTTGGTGGCAC
1 CCTTTAGTCCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCAC
* * * * * *
1358922 CCTTTAGTCCTCAAAAAGCAAGATGGCTTTTTCCTTTCAAAGCCCACATGAGTTAGTGGCAC
1 CCTTTAGTCCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCAC
* * * * *
1358984 CCTTT-GCTCCTCAAAGAGCCA-TAAGCCTTTTTCTTTTCAAAACCCACACGGGTTGGTGGCAC
1 CCTTTAG-TCCTCAAAGAG-CAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCAC
* * * ** * * ** *
1359046 CCTTTTGTCCTTAAAGAGTAGGACATCTTTTTCCTTTCAATGCCCATATAAGTTGGTGTCAC
1 CCTTTAGTCCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCAC
* * * * *
1359108 TCTTTAGTCCTCAAAGAGTAGGACACCTTTTTCCTTTCAAAGCCCACACGGGTTGGTGGCATA
1 CCTTTAGTCCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCA-C
* * * * * * *
1359171 CTTTTAGTCCACAAAGAGCAGGATGCCTTTTTCTTTTCAAAGCCCAGATGGGTTGGTGGCAC
1 CCTTTAGTCCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCAC
* * *
1359233 CCTTTAGTCTTCAAAGAGCATGATGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCAC
1 CCTTTAGTCCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCAC
* * * * * *
1359295 CCTTTAGTCCTCAAAAAGCAGGATGCCTTTTTCATTTCAAAACCCATA-TAGGTTGGTGGCAC
1 CCTTTAGTCCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGA-GTTGGTGGCAC
* * * * * * *
1359357 CATATT-GTCTTCAAAGAACAGGAAGCCTTTTTCTTTTCAAAGCCCACAAGGGTTGGTGGCAC
1 CCT-TTAGTCCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCAC
* * * * *
1359419 CTTTTAGTCCACAAAGAGTAGGATGCCTTTTTCTTTTCAAAGCCCACACGAGTTGGTGGCAC
1 CCTTTAGTCCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCAC
* * * * * *
1359481 CCTTTAGTCCTCAAAGAGTAGGATGCCCTTTTCTTTTCAAAGCCCACACAAATTGGTGGCAC
1 CCTTTAGTCCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCAC
* * * *
1359543 CCTTAAGTCCTCAAAGAGCATGATGCCTTTTTCCTTTCAAA-CCCACACAAGTTGGTGGCAC
1 CCTTTAGTCCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCAC
** * * *
1359604 CCTTTAGTCCTTGAAGAGAAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTCGGTGGCTC
1 CCTTTAGTCCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCAC
* * * * * * *
1359666 TCTTTAGTCCTAAAAGAGTAGGATGCCTTTTTCCTTTCAAAGCCTAAACGAGTTGGAGGCAC
1 CCTTTAGTCCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCAC
*
1359728 CCTTTAGTCCTCAAAGA--ATGCGATGCC-TTTTCCATTTCAAAGCCCACACGAGTTGGTGGCAC
1 CCTTTAGTCCTCAAAGAGCA-G-GACGCCTTTTTCC-TTTCAAAGCCCACACGAGTTGGTGGCAC
* * * * * *
1359790 CCTTTACTCCTCAAAGAGCCA-GAAGCCTTTTTCTTTTTAAAGCCCGCACGGGTTGGTGGCAC
1 CCTTTAGTCCTCAAAGAG-CAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCAC
* * * * * *
1359852 CATTTTGTCCTCAAAGAGC-GGAACACCTTTTTTTCTTTTCAAAGCCCATATGAGTTGGTGGCAC
1 CCTTTAGTCCTCAAAGAGCAGG-ACGCC--TTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCAC
* * * * * * *
1359916 CATTTAGTCCTCAAAGAGCAGGATGCATTTTTCTTTTCAAAGCCCACATGATTTGGTGGAAC
1 CCTTTAGTCCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCAC
* * * * * * * *
1359978 CCTTTAGTCCTCAAAAAGCAGGATGCCTTCTTCGTTTGAAAGCCCACACGGGTTAGTGGCGC
1 CCTTTAGTCCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCAC
* * * * * * * * * *
1360040 CATTTTGTCCTTAAAGTGTAGGACACCTTTTTCTTTTCAAAGCCCGCGCGTGTTGGTGGCAC
1 CCTTTAGTCCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCAC
* * * *
1360102 CCTTTAGTCCTCAAAGGGCAGGATGCCTTTTTCTTTTTAAAGCCCACACGAGTTGGTGGCAC
1 CCTTTAGTCCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCAC
* * * * * * * *
1360164 CCTTTAGTCCTCAAGGCGCAAGATGCCCTTTTCCTTTCAAAGCTCACACAAATTGGTGGCAC
1 CCTTTAGTCCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCAC
* * * *
1360226 CCTTTAGTCCTCAAAGAGTAAGATGCCATTTTCCTTTCAAAGCCCACACGAGTTGGTGGCAC
1 CCTTTAGTCCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCAC
* *
1360288 CCTTTAGTCCTCGAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCAAAC-AGTTGGTGGCAC
1 CCTTTAGTCCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCAC
* * * * * * *
1360349 CCTTTAGTCCTCGAAGAACAAGACACCGTTTTCCTTTCAAAACCCACACGAGTTGCTGGCAC
1 CCTTTAGTCCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCAC
* * * * * * *
1360411 CTTTTAGTCCTTAAAGAGCATGATGCCTTCTTCCTTTCAAAGCCCACAC-AGGTCGGTGGCTC
1 CCTTTAGTCCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGA-GTTGGTGGCAC
* * * * * * ** ** * * * * *
1360473 TCTTTAGCCCTTAAAAAGTAGGACACCTTTTTCCTTTTGAAGTGCACGCAAGTCGATGGCTC
1 CCTTTAGTCCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCAC
* * * ** * * *
1360535 CCTTTAGCCCTCAAAGAGTAGGACACCTTTTTCCTTTTGAATCCCACACGAGTTAGTGGCTC
1 CCTTTAGTCCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCAC
* * * * * * * *
1360597 TCTTTAGTCCTCAAAAAGCATGATGCCTTTGTCCTTCCAAAGCCCACACTAGTTGGAGGCAC
1 CCTTTAGTCCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCAC
* ** ** * *
1360659 CCTTGAGTCCTCAAAGAGTGGGTTGCC-TTTTCCATTTCAAAGCCCACATGAGTTGGTAGCAC
1 CCTTTAGTCCTCAAAGAGCAGGACGCCTTTTTCC-TTTCAAAGCCCACACGAGTTGGTGGCAC
* * * * * *
1360721 CCTTTACTCCTCAAAGAGCCA-GAAGCCTTTTTCTTTTCAAAGCTCGCACAAGTTGGTGGCAC
1 CCTTTAGTCCTCAAAGAG-CAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCAC
* * * * * * * *
1360783 CATTTTGTCCTCAAAGAGAAGGACACCTTTTTCTTTTCAAAGCCCATATGAGTTTGTGGCAC
1 CCTTTAGTCCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCAC
* * * * * ** *
1360845 CATTTAGTCCTGAAAAAGCAGGACGCCTTTTTCCTTTCAAAGCCCACTCGTGTTGGTTACCC
1 CCTTTAGTCCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCAC
* * *
1360907 CCTTTAG-CGCTCAAAGAGCAGGACACCTTGTTCCTTTCAAAGCCCACACGAGTTGGTGGCTC
1 CCTTTAGTC-CTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCAC
* * * * * * *
1360969 CCTTTAGTCCTCAAATAGCAGGATGCCTTTTTCCTTTCAAAGCACAAACGTGTTAGTGGCAA
1 CCTTTAGTCCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCAC
* * * ** * *
1361031 TCTTTTGTCCTTAAAGAGTGGGACGCCTTTTT-TTTTCAAAGCCCAAACGAGTTGGTGGCA-
1 CCTTTAGTCCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCAC
** * * ** * * * * *
1361091 TTTTTCAGCCCTCAAAGAGTAGGACGTTTTTTTCTTTTTAAGGCTCACACGGGTTGGTGGCAC
1 CCTTT-AGTCCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCAC
* * * * * *
1361154 CCTTTAGTCCCCAAAAAGCTGGACGCCTTTTTCATTTCAAAGCTCACACGGGTTGGTGGCAC
1 CCTTTAGTCCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCAC
* * * * * * * * *
1361216 CATTTTGTCCTCAAAGAGCAGGGCACC-TTTTCTTTTCCAAGCCCATATGAGGTGGTGGCAC
1 CCTTTAGTCCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCAC
* * * * * * * *
1361277 CATTTAGTTCTCAAAGAGCAGGATGCATTTTTCTTTTCAAAGCCTACATGAGTTGGCGGCAC
1 CCTTTAGTCCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCAC
* * * *
1361339 CCTTTAGTCCTCAAAAAGCAGGACACCTTTTTCCTTTCAAAACCCACACGAGTCGGTGGCAC
1 CCTTTAGTCCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCAC
* * * * * * *
1361401 CTTTTAGTCCTTAAAGAGCAGGATGCCTTTTTCCTTTCAAAGCCCACA-TAGGTCGTTGGCTC
1 CCTTTAGTCCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGA-GTTGGTGGCAC
** * * * * * * * * *
1361463 TTTTTAGCCCTTAAAAAGTAGGACACCTTTTTCCTTTCGAAGCCCACACGAGTCGATGGCTC
1 CCTTTAGTCCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCAC
* * * ** * * *
1361525 CCTTTAGCCCTCAAAGAGTAGGACACCTTTTTCCTTTTGAAGCCCACACGAATTGGTGCCTC
1 CCTTTAGTCCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCAC
* * * * * * *
1361587 TCTTTAGTCCTCAAAGAGTAGGATGCTTTTTTTCCTTTCAAAGCCCGCACAAGTTGGAGGCAC
1 CCTTTAGTCCTCAAAGAGCAGGACGC-CTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCAC
* * ** * * *
1361650 CGTGTAGTCCTCAAAGAGTTGGATGCC-TTTTCCATTTCAATGCCCACATGAGTTGGTGGCAC
1 CCTTTAGTCCTCAAAGAGCAGGACGCCTTTTTCC-TTTCAAAGCCCACACGAGTTGGTGGCAC
* * * *
1361712 CCTTTACTCCTCAAAGAGCCAGAAC-CCTTTTTCTTTTCAAAGCCCGCACTG-GTTGGTGGCAC
1 CCTTTAGTCCTCAAAGAG-CAGGACGCCTTTTTCCTTTCAAAGCCCACAC-GAGTTGGTGGCAC
* * * * * * * * * *
1361774 CATTTTGTCCTAAAAAAGCAGAACACCTTTTTCTTTTCAAAGCCTATATGAGTTGGTGGCAC
1 CCTTTAGTCCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCAC
* ** * * * *
1361836 CATTTAGTCCTCAAAGAGCAGGATACATTTTTCTTTTCAAAGCCTACATGAGTTGGTGGCAC
1 CCTTTAGTCCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCAC
* * * * * * * **
1361898 CCTTTAGTCCTCAAAAAGTAGGATGCCTTCTTCGTTTCAAAGCCCACACGGGTTAGTGGTGC
1 CCTTTAGTCCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCAC
* * * * * * * *
1361960 CATTTTGTCCTCAGAGAGCAGGACACCTTTTTCTTTTCGAAGCCCGCACGTGTTGGTGGCAC
1 CCTTTAGTCCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCAC
* * * * *
1362022 CTTTTAGTCCTCAAAGAGCAGGATGCCCTTTTCCTTTCAAAGCCCACACAAATTGGTGGCA-
1 CCTTTAGTCCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCAC
* * * * *
1362083 CCTATTAGTCCTCAAAGAGTAGGATGTCTTTTTCCTTTCAAAGGCCAGACGAGTTGGTGGCAC
1 CCT-TTAGTCCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCAC
* * *
1362146 CCTTTAGTCCTCGAAGAGCAGGACGCCTTTTTCTTTTCAAAGCCCAAAC-AGTTGGTGGCAC
1 CCTTTAGTCCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCAC
* * * * * *
1362207 CCTTTAGTTCTCGAAGAGCAAGACACCTTTTTCCTTTCAAAACCCACACGAGTCGGTGGCAC
1 CCTTTAGTCCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCAC
* * * * * *
1362269 CTTTTAGTCCTTAAAGAGCAGGATGCCTTTTTCCTTTCAAAGCCCACACGGGTCGGTGGCTC
1 CCTTTAGTCCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCAC
* * * * * ** * * *
1362331 TCTTTAGCCCTTAAAAAGTAGGACATCTTTTTCCTTTCAAAGCCCACA-GAAGTCGATGGCTC
1 CCTTTAGTCCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACG-AGTTGGTGGCAC
* * * * * ** * * * *
1362393 ACTTTAGCCCTCAAAGAGTAGGACACCTTTTCCCTTTTGAGGTCCACACGAGTTGGTTGCTC
1 CCTTTAGTCCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCAC
* * * * *
1362455 TCTTTAGTCCTCAAAGAGCAGGATGCCTTTTTCCTTTCAAAGCCTACACGAGTTGGAGGCGC
1 CCTTTAGTCCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCAC
** *
1362517 CCTTTAGTCCTCAAAGAGTGGGATGCC-TTTTCCATTTCAAAGCCCACACGAGTTGGTGGCAC
1 CCTTTAGTCCTCAAAGAGCAGGACGCCTTTTTCC-TTTCAAAGCCCACACGAGTTGGTGGCAC
1362579 CCTGTTAG
1 CCT-TTAG
1362587 GATCTTGGTT
Statistics
Matches: 4868, Mismatches: 986, Indels: 183
0.81 0.16 0.03
Matches are distributed among these distances:
52 29 0.01
53 9 0.00
54 3 0.00
55 1 0.00
56 1 0.00
59 1 0.00
60 17 0.00
61 532 0.11
62 4020 0.83
63 197 0.04
64 55 0.01
65 3 0.00
ACGTcount: A:0.24, C:0.26, G:0.20, T:0.30
Consensus pattern (62 bp):
CCTTTAGTCCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCAC
Found at i:1362812 original size:13 final size:13
Alignment explanation
Indices: 1362794--1362818 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
1362784 ATAATGCAGA
1362794 GTATCGATACATT
1 GTATCGATACATT
1362807 GTATCGATACAT
1 GTATCGATACAT
1362819 GACCAAATGT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
GTATCGATACATT
Found at i:1362831 original size:20 final size:21
Alignment explanation
Indices: 1362806--1362858 Score: 65
Period size: 20 Copynumber: 2.6 Consensus size: 21
1362796 ATCGATACAT
*
1362806 TGTATCGATACATG-ACCA-AA
1 TGTATCGATACATGCA-AAGAA
*
1362826 TGTATCGATACTTGCAAAGAA
1 TGTATCGATACATGCAAAGAA
1362847 TGTATCGATACA
1 TGTATCGATACA
1362859 GGTGATTGGC
Statistics
Matches: 28, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
20 14 0.50
21 14 0.50
ACGTcount: A:0.38, C:0.17, G:0.17, T:0.28
Consensus pattern (21 bp):
TGTATCGATACATGCAAAGAA
Done.