Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold215
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 2124891
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
File 9 of 16
Found at i:1362960 original size:33 final size:32
Alignment explanation
Indices: 1362899--1362966 Score: 102
Period size: 33 Copynumber: 2.1 Consensus size: 32
1362889 CCTTAACTGT
1362899 TTGTATCGATACATACAAGATGTATCGATACA
1 TTGTATCGATACATACAAGATGTATCGATACA
*
1362931 TTGTATTGATACATGACCAA-ATGTATCGATACA
1 TTGTATCGATACAT-A-CAAGATGTATCGATACA
1362964 TTG
1 TTG
1362967 GCTTGTAACG
Statistics
Matches: 33, Mismatches: 1, Indels: 3
0.89 0.03 0.08
Matches are distributed among these distances:
32 13 0.39
33 17 0.52
34 3 0.09
ACGTcount: A:0.35, C:0.15, G:0.16, T:0.34
Consensus pattern (32 bp):
TTGTATCGATACATACAAGATGTATCGATACA
Found at i:1374325 original size:13 final size:13
Alignment explanation
Indices: 1374307--1374345 Score: 69
Period size: 13 Copynumber: 3.0 Consensus size: 13
1374297 ACATTTTTCT
1374307 TTGTATCGATACA
1 TTGTATCGATACA
1374320 TTGTATCGATACA
1 TTGTATCGATACA
*
1374333 CTGTATCGATACA
1 TTGTATCGATACA
1374346 GGCTGTTTAT
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
13 25 1.00
ACGTcount: A:0.31, C:0.18, G:0.15, T:0.36
Consensus pattern (13 bp):
TTGTATCGATACA
Found at i:1379077 original size:13 final size:13
Alignment explanation
Indices: 1379059--1379095 Score: 56
Period size: 13 Copynumber: 2.8 Consensus size: 13
1379049 GAATTCTCTG
1379059 TATCGATACATTA
1 TATCGATACATTA
* *
1379072 TATCGATACACTG
1 TATCGATACATTA
1379085 TATCGATACAT
1 TATCGATACAT
1379096 GGCAATTATA
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
13 21 1.00
ACGTcount: A:0.35, C:0.19, G:0.11, T:0.35
Consensus pattern (13 bp):
TATCGATACATTA
Found at i:1379562 original size:20 final size:21
Alignment explanation
Indices: 1379530--1379571 Score: 68
Period size: 20 Copynumber: 2.0 Consensus size: 21
1379520 TCTCTAGGCA
*
1379530 GCACTCACCAGGTCGCGACCG
1 GCACTCACCAGGTCGCAACCG
1379551 GCACTC-CCAGGTCGCAACCG
1 GCACTCACCAGGTCGCAACCG
1379571 G
1 G
1379572 GTAGCCCCCA
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
20 14 0.70
21 6 0.30
ACGTcount: A:0.19, C:0.43, G:0.29, T:0.10
Consensus pattern (21 bp):
GCACTCACCAGGTCGCAACCG
Found at i:1381563 original size:13 final size:13
Alignment explanation
Indices: 1381545--1381569 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
1381535 ATAATGCACA
1381545 GTATCGATACATT
1 GTATCGATACATT
1381558 GTATCGATACAT
1 GTATCGATACAT
1381570 GACCAAATGT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
GTATCGATACATT
Found at i:1382441 original size:62 final size:62
Alignment explanation
Indices: 1382321--1388283 Score: 5513
Period size: 62 Copynumber: 96.5 Consensus size: 62
1382311 TGAGGTTTCA
* * * * *
1382321 CACCCTTTACTCCTCAAAGAGCCA-GAAGCC-TTTTCTTTTCAAAGCCCGCACTAGTTGGTGA
1 CACCCTTTAGTCCTCAAAGAG-CAGGACGCCTTTTTCTTTTCAAAGCCCACACGAGTTGGTGG
* * * * * *
1382382 CACCATTTTGTCCTCAAAGAGCAGGACACCTTTTTCTTTTCAAAGCCGATATGAGTTGGTGG
1 CACCCTTTAGTCCTCAAAGAGCAGGACGCCTTTTTCTTTTCAAAGCCCACACGAGTTGGTGG
* * *
1382444 CACCATTTAGTCCTCAAAGAGCAGGATGCATTTTTCTTTTCAAAGCCCACACGAGTTGGTGG
1 CACCCTTTAGTCCTCAAAGAGCAGGACGCCTTTTTCTTTTCAAAGCCCACACGAGTTGGTGG
* * * * * * * *
1382506 CACCCTTTAGTCTTGAAAAAGCAGGACGCCTTCTTCGTTTCAAAGCCCATACGGGTTAGTGG
1 CACCCTTTAGTCCTCAAAGAGCAGGACGCCTTTTTCTTTTCAAAGCCCACACGAGTTGGTGG
* * * * * *
1382568 CGCCGTTTTA-TCCTCAAAAAGCAGGACACCTTTTTCTTTTCAAAGCCCATATGAGTTGGTGG
1 CACC-CTTTAGTCCTCAAAGAGCAGGACGCCTTTTTCTTTTCAAAGCCCACACGAGTTGGTGG
* * *
1382630 CACCATTTAGTCCTCAAAGAGCAGGACGCCTTTCTCCTTTCAAAGCCCACACGAGTTGGTGG
1 CACCCTTTAGTCCTCAAAGAGCAGGACGCCTTTTTCTTTTCAAAGCCCACACGAGTTGGTGG
* * * * * *
1382692 CACTCTTTAGTCCTCAAAGAGTAGGATGCCTTTTTCCTTTCAAAGCCCGCACAAGTTGGT--
1 CACCCTTTAGTCCTCAAAGAGCAGGACGCCTTTTTCTTTTCAAAGCCCACACGAGTTGGTGG
* * * *
1382752 CATTCCCTTTAG-CCTTTAAAGAGCAGGACACCTTTTTCCTTTCAAAGCCCACATGAGTTGGTGG
1 CA--CCCTTTAGTCC-TCAAAGAGCAGGACGCCTTTTTCTTTTCAAAGCCCACACGAGTTGGTGG
* * * * * * * * *
1382816 CTCCCTTTAGTCCTAAAATAGCAAGATGCCTTTTTCCTTTCAAAGCGCAAACGAGTTAGTGG
1 CACCCTTTAGTCCTCAAAGAGCAGGACGCCTTTTTCTTTTCAAAGCCCACACGAGTTGGTGG
** *
1382878 CA-ATTTTAGTCCTCAAAGAGCAGGACG-C-TTTT-TTTT-AAAGCCCAAACGAGTTGGTGG
1 CACCCTTTAGTCCTCAAAGAGCAGGACGCCTTTTTCTTTTCAAAGCCCACACGAGTTGGTGG
** * * *** * * * *
1382935 CA-TTTTTCAGCCCTCAAAGAGTAGGACATTTTTTTCTTTTTAAGGCTCACACAAGTTGGTGG
1 CACCCTTT-AGTCCTCAAAGAGCAGGACGCCTTTTTCTTTTCAAAGCCCACACGAGTTGGTGG
* * * * *
1382997 CACCCTTTAGTCCTCCAAA-AGCAGGACGCCTTTTTCATTTCAAAGCTCACATGGGTTAGTGG
1 CACCCTTTAGTCCT-CAAAGAGCAGGACGCCTTTTTCTTTTCAAAGCCCACACGAGTTGGTGG
* * * * * *
1383059 CACCATTTTGTCCTCAAAGAGCAAGACACC-TTTTCTTTTCAAAGCCCATATGAGTTGGTGG
1 CACCCTTTAGTCCTCAAAGAGCAGGACGCCTTTTTCTTTTCAAAGCCCACACGAGTTGGTGG
* * * *
1383120 CACCATTTAGTCCTCAAAGAGCAGGATGCATTTTTCTTTTCAAAGCCCACATGAGTTGGTGG
1 CACCCTTTAGTCCTCAAAGAGCAGGACGCCTTTTTCTTTTCAAAGCCCACACGAGTTGGTGG
* * * * * **
1383182 CACCCTTTAGTCCTCAAAAAGCAAGACGCTTTTTTCGTTTCAAAGCCCACACAAGTTAATGG
1 CACCCTTTAGTCCTCAAAGAGCAGGACGCCTTTTTCTTTTCAAAGCCCACACGAGTTGGTGG
* * * * * * * * *
1383244 CGCCATTTTGTCCTCAAAGAGAAAGACACCTTTTTCTTTTCAAAGCCCGCACGTGTTAGTGG
1 CACCCTTTAGTCCTCAAAGAGCAGGACGCCTTTTTCTTTTCAAAGCCCACACGAGTTGGTGG
* * * *
1383306 CACCCTTTAGCCCTCAAAGAGTAGGACGGCTTTTTCTTTTCAAAGCCTACACGAGTTGGTGG
1 CACCCTTTAGTCCTCAAAGAGCAGGACGCCTTTTTCTTTTCAAAGCCCACACGAGTTGGTGG
* * * * *
1383368 CACCCTTTGGTCCTCAAAGAGCATGATGCCATTTTCCTTTCAAAGCCCACACGAGTTGGTGG
1 CACCCTTTAGTCCTCAAAGAGCAGGACGCCTTTTTCTTTTCAAAGCCCACACGAGTTGGTGG
* * * * *
1383430 CACCCTTTAGTCCTCAAAGAGCAGGATGCCCTTTTCCTTTCAAAGCCCACACAAATTGGTGG
1 CACCCTTTAGTCCTCAAAGAGCAGGACGCCTTTTTCTTTTCAAAGCCCACACGAGTTGGTGG
* * * *
1383492 CACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTTTCCTTTCAAAGCCCACACAAATTGGTGG
1 CACCCTTTAGTCCTCAAAGAGCAGGACGCCTTTTTCTTTTCAAAGCCCACACGAGTTGGTGG
** * * *
1383554 CAAGCTTTAGTCCTCAAAGAGCAGGATGCCCTTTTCCTTTCAAAGCCCACACGAGTTGGTGG
1 CACCCTTTAGTCCTCAAAGAGCAGGACGCCTTTTTCTTTTCAAAGCCCACACGAGTTGGTGG
* * * * * *
1383616 CACCCTTTAGTCCTCGATGAGCATGATGCCTTTTTCCTTTCAAAGCCCACA-AAGTTGGTGG
1 CACCCTTTAGTCCTCAAAGAGCAGGACGCCTTTTTCTTTTCAAAGCCCACACGAGTTGGTGG
* * * * * * * *
1383677 CACCCTTTAGTCCTCGAAGAGCAAGACACCTTTTTCCTTTCAAAACCCACCCGAGTCGGTGC
1 CACCCTTTAGTCCTCAAAGAGCAGGACGCCTTTTTCTTTTCAAAGCCCACACGAGTTGGTGG
* * * * * *
1383739 CACCTTTTAGTCCTTAAAGAGCAGGATGCCTTTTTCATTTT-AAAGCCCACATGGGTCGGTGG
1 CACCCTTTAGTCCTCAAAGAGCAGGACGCCTTTTTC-TTTTCAAAGCCCACACGAGTTGGTGG
* * * * * * * * * * * *
1383801 CTCTCTTTAGCCCTTAAAAAGCAGGACGTCTTTTTCATTTCGAAGCCCACATGAGTCGATAG
1 CACCCTTTAGTCCTCAAAGAGCAGGACGCCTTTTTCTTTTCAAAGCCCACACGAGTTGGTGG
* * ** * *
1383863 CTCCCTTTAGCCCTTGAAGAGCAGGACACCTTTTTCCTTTT-GAAGCCCACACGAGTTGGTGG
1 CACCCTTTAGTCCTCAAAGAGCAGGACGCCTTTTT-CTTTTCAAAGCCCACACGAGTTGGTGG
* ** * * * * *
1383925 CTCTTTTTAGTCCTCAAAGAGTAGGATGCCTTTTTCCTTTCAATGCCCACACGAGTTGGAGG
1 CACCCTTTAGTCCTCAAAGAGCAGGACGCCTTTTTCTTTTCAAAGCCCACACGAGTTGGTGG
* * *
1383987 CACCCTTTAGTCCTCAAGGAG-AGGGATGCCTTTTCCATTTT-AAAGCCCACACGAGTTGGTGG
1 CACCCTTTAGTCCTCAAAGAGCA-GGACGCCTTTTTC-TTTTCAAAGCCCACACGAGTTGGTGG
* * * * *
1384049 CACCCTTTACTCCTCAAAGAGCCA-GAAGCCTTTTTCTTTTTAAAGCCCGCACGGGTTGGTGG
1 CACCCTTTAGTCCTCAAAGAG-CAGGACGCCTTTTTCTTTTCAAAGCCCACACGAGTTGGTGG
* * * * * * *
1384111 CACCATTTTGTCCTCTAAGAG-AGGGACACCTTTTTCTTTTCAAAGCCCATATGAGTTAGTGG
1 CACCCTTTAGTCCTCAAAGAGCA-GGACGCCTTTTTCTTTTCAAAGCCCACACGAGTTGGTGG
* * *
1384173 CACCATTTAGTCCTCAAAGAGCAGGACACCTTTTTCCTTTT-AAAGCCCACACGAGTTGGCGG
1 CACCCTTTAGTCCTCAAAGAGCAGGACGCCTTTTT-CTTTTCAAAGCCCACACGAGTTGGTGG
** * * * * *
1384235 CACCCTTTAGTCCTCAAAGAATAGGATGCCTTTTTCCTTTCAAAGCCCGCACGAGTAGGTCG
1 CACCCTTTAGTCCTCAAAGAGCAGGACGCCTTTTTCTTTTCAAAGCCCACACGAGTTGGTGG
* * * *
1384297 CTCCCTTTAG-CTCTCAAAGAGCAGGACACCTTTTTCCTTTCAATGCCCACACGAGTTGGTGG
1 CACCCTTTAGTC-CTCAAAGAGCAGGACGCCTTTTTCTTTTCAAAGCCCACACGAGTTGGTGG
* * * * * *
1384359 CTCCCTTTAGTCCTCAAATAGCAGGATGCCTTTTTCCTTTCAAAGCGCAAACGA-TGTGGTGG
1 CACCCTTTAGTCCTCAAAGAGCAGGACGCCTTTTTCTTTTCAAAGCCCACACGAGT-TGGTGG
** * * * * * *
1384421 CAATCTTTAGTCCTTAAAGAGAAGGA--CATTTTTTTTTTCAAAGTCCAAACGAGTTGGTGG
1 CACCCTTTAGTCCTCAAAGAGCAGGACGCCTTTTTCTTTTCAAAGCCCACACGAGTTGGTGG
** * * ** * * * *
1384481 CA-TTTTTCAGCCCTCAAAGAGTAGGACGTTTTTTTTCTTTTTAAGGCTCACATG-GCTTGGTGG
1 CACCCTTT-AGTCCTCAAAGAGCAGGACG-CCTTTTTCTTTTCAAAGCCCACACGAG-TTGGTGG
* *
1384544 CACCCTTTAGTCCTCAGAA-AGGC-GGACGCCTTTTTCATTTCAAAGCTCACAC-AGGTTGGTGG
1 CACCCTTTAGTCCTCA-AAGA-GCAGGACGCCTTTTTCTTTTCAAAGCCCACACGA-GTTGGTGG
* ** ** *
1384606 CACCATTTAGTCCTCAAAGAGCAGGATACAATTTTCTTTGCAAAGCCCACACGAGTTGGTGG
1 CACCCTTTAGTCCTCAAAGAGCAGGACGCCTTTTTCTTTTCAAAGCCCACACGAGTTGGTGG
* * * * * * *
1384668 CGCCCTTTAGTCCTCAAAAAGCGGGACGCCTTTTTCGTTTCAAAGCCCACATGGGTTAGTGG
1 CACCCTTTAGTCCTCAAAGAGCAGGACGCCTTTTTCTTTTCAAAGCCCACACGAGTTGGTGG
* * * * * * *
1384730 CGCCATTTTGTCCTCAAAGAGCAGGTCACC----T-TTTTCAAAGCCCGCACGTGTTGGTGG
1 CACCCTTTAGTCCTCAAAGAGCAGGACGCCTTTTTCTTTTCAAAGCCCACACGAGTTGGTGG
* * *
1384787 CACCCTTTAGTCCTTAAAGAGCAGGATGCCTTTTTCTTTTCAAAGCCCACAGGAGTTGGTGG
1 CACCCTTTAGTCCTCAAAGAGCAGGACGCCTTTTTCTTTTCAAAGCCCACACGAGTTGGTGG
* * * * * * *
1384849 CACGCTTTAGTCCTCAAAGAGCAGAATGCCCTTTTCCTTTCAAAGCCCACACAAATTGGTGG
1 CACCCTTTAGTCCTCAAAGAGCAGGACGCCTTTTTCTTTTCAAAGCCCACACGAGTTGGTGG
*
1384911 CACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTTTGC-TTTCAAAGCCCACACGAGTTGGTGG
1 CACCCTTTAGTCCTCAAAGAGCAGGACGCCTTTTT-CTTTTCAAAGCCCACACGAGTTGGTGG
* * * * * *
1384973 TAGCCTTTAGTCCTCGAAGAGTC-GGATGCCTTTTTCCTTTCAAAGCCCATAC-AGTTGGTGG
1 CACCCTTTAGTCCTCAAAGAG-CAGGACGCCTTTTTCTTTTCAAAGCCCACACGAGTTGGTGG
* * * * * * *
1385034 CACCCTTTAGTCCTCGAAGAGCAAGACACATTTTTCCTTTCAAAACCCACACGAGTCGGTGG
1 CACCCTTTAGTCCTCAAAGAGCAGGACGCCTTTTTCTTTTCAAAGCCCACACGAGTTGGTGG
* * * * ** * *
1385096 CAACTTTTAGTCCTTAAAGAGCAGGATGTTTTTTTCCTTTCAAAGCCCACACGGGTTGGTGG
1 CACCCTTTAGTCCTCAAAGAGCAGGACGCCTTTTTCTTTTCAAAGCCCACACGAGTTGGTGG
* * * * * * * * * * *
1385158 CTCTCTTTAGCCCTTAAAG-GTAGGACACCTTTTTCCTTTCGAAGCCCACACAAGTCGATGG
1 CACCCTTTAGTCCTCAAAGAGCAGGACGCCTTTTTCTTTTCAAAGCCCACACGAGTTGGTGG
* * * *
1385219 CTCCCTTTAGCCCTCAAAGAGTAGGACACCTTTTTCCTTTT-AAAGCCCACACGAGTTGGTGG
1 CACCCTTTAGTCCTCAAAGAGCAGGACGCCTTTTT-CTTTTCAAAGCCCACACGAGTTGGTGG
* * * * * * *
1385281 CTCTCTTTAGTCCTTAAAGAGCAGGATGCTTTTTTCCTTTCAAAGCCCACACGAGTTGGAGG
1 CACCCTTTAGTCCTCAAAGAGCAGGACGCCTTTTTCTTTTCAAAGCCCACACGAGTTGGTGG
* ** * *
1385343 CACCC-TTAGGACCTCAAAGAGTGGGAAGCCTTTTCCATTTT-AAAGCCCACACGAGTTGGTGG
1 CACCCTTTA-GTCCTCAAAGAGCAGGACGCCTTTTTC-TTTTCAAAGCCCACACGAGTTGGTGG
** * * * * *
1385405 CACCCTTTTCTCCTCAAAGAGTC-GGAAGCCTTTTTCTTTTCAAAGCTCGCACGGGTTGGTGA
1 CACCCTTTAGTCCTCAAAGAG-CAGGACGCCTTTTTCTTTTCAAAGCCCACACGAGTTGGTGG
** * * ** * * *
1385467 CACAATTTTGTACTCAAAGAGGGGGACACCTTTTTCTTTTCAAAACCAACACGAGTTGGTGG
1 CACCCTTTAGTCCTCAAAGAGCAGGACGCCTTTTTCTTTTCAAAGCCCACACGAGTTGGTGG
* * * * *
1385529 CACCCTTTAGTCCTCAAAAAGCAGGATGACTTTTTCCTTTCAAAGCCCACATGAGTTGGTGG
1 CACCCTTTAGTCCTCAAAGAGCAGGACGCCTTTTTCTTTTCAAAGCCCACACGAGTTGGTGG
* * *
1385591 CACCCTTT-GCTCCTCAAAGAGCCA-GAAGCCTTTTTATTTTCAAAGCCCACACGGGTTGGTGG
1 CACCCTTTAG-TCCTCAAAGAG-CAGGACGCCTTTTTCTTTTCAAAGCCCACACGAGTTGGTGG
* * * * * ** * * *
1385653 CAACCTTTTGTCCTTAAACAGTAGGACATCTTTTTCCTTTCAATGCCCACACGAGTTGGTGT
1 CACCCTTTAGTCCTCAAAGAGCAGGACGCCTTTTTCTTTTCAAAGCCCACACGAGTTGGTGG
* * * * *
1385715 CACTCTTTAGTCCTCAAAGAGTAGGACACCTTTTTCCTTTCAAAGCCCACACGGGTTGGTGG
1 CACCCTTTAGTCCTCAAAGAGCAGGACGCCTTTTTCTTTTCAAAGCCCACACGAGTTGGTGG
* * * * *
1385777 CACACTTTAGTCCACAAAGAGCAGGATGCCTTTTTCTTTTCAAAGCCCAGA-TAGGTTGGTGG
1 CACCCTTTAGTCCTCAAAGAGCAGGACGCCTTTTTCTTTTCAAAGCCCACACGA-GTTGGTGG
* * * *
1385839 CACCCATTAGTCCTCAAAGAGTAGGATGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGG
1 CACCCTTTAGTCCTCAAAGAGCAGGACGCCTTTTTCTTTTCAAAGCCCACACGAGTTGGTGG
* * * * * * *
1385901 CACCCTTTAGTCCTCAAAAAGCAGGATGCTTTTTTCGTTGCAAAACCCATAC-AGGTTGGTGG
1 CACCCTTTAGTCCTCAAAGAGCAGGACGCCTTTTTCTTTTCAAAGCCCACACGA-GTTGGTGG
* * * * *
1385963 CACCATATT-GTCCTCAAAGAACAGGAAGCCTTTTTCTTTTCAAAGCCCACAAGGGTTGGTGG
1 CACCCT-TTAGTCCTCAAAGAGCAGGACGCCTTTTTCTTTTCAAAGCCCACACGAGTTGGTGG
* * ** * * *
1386025 CACCCTTTAGTCCACAAAGAGTAGGGTGCCTTTTTCTTTTCAAAGCCCAGATGGGTTGGTGG
1 CACCCTTTAGTCCTCAAAGAGCAGGACGCCTTTTTCTTTTCAAAGCCCACACGAGTTGGTGG
* * * * * *
1386087 CACCCTTTAGTCCTCAAAGAGGAGGATGCCTTTTTCCTTTCAAAGCCCACATGAGTAGGTGA
1 CACCCTTTAGTCCTCAAAGAGCAGGACGCCTTTTTCTTTTCAAAGCCCACACGAGTTGGTGG
* * * * * *
1386149 CACCTTTTAGTCCTCAAAAAGCAGGATGCCTTTTTCGTTTCAAA-CCTATACG-GTTTGGTGG
1 CACCCTTTAGTCCTCAAAGAGCAGGACGCCTTTTTCTTTTCAAAGCCCACACGAG-TTGGTGG
* * * *
1386210 C-CTCATTTTGTCCTCAAAGAGTAGGACTCCTTTTTCTTTTCAAAGCCCACAC-ATGTTGGTGG
1 CAC-CCTTTAGTCCTCAAAGAGCAGGACGCCTTTTTCTTTTCAAAGCCCACACGA-GTTGGTGG
* *
1386272 CACCCTTTAGTCCTCAAAGAGCAGGAC-CCTTTTTTCTTTTCAAAGCCTACACGAGTTTGTGG
1 CACCCTTTAGTCCTCAAAGAGCAGGACGCC-TTTTTCTTTTCAAAGCCCACACGAGTTGGTGG
* * * *
1386334 CACCCTATAGTTCTCAAAGAGCAGGATGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGG
1 CACCCTTTAGTCCTCAAAGAGCAGGACGCCTTTTTCTTTTCAAAGCCCACACGAGTTGGTGG
* * * *
1386396 CACCCTTTAGTCCTCGAAGAGCTGGATGCCTTTTTCCTTTCAAAGCCCACAC-AGTTGGTGG
1 CACCCTTTAGTCCTCAAAGAGCAGGACGCCTTTTTCTTTTCAAAGCCCACACGAGTTGGTGG
* * * * ** *
1386457 CATCCTTTAGTCCTCGAAGAGCAGGACACCTTTTTCCTTTCAAAATCCACACGAGTTGATGG
1 CACCCTTTAGTCCTCAAAGAGCAGGACGCCTTTTTCTTTTCAAAGCCCACACGAGTTGGTGG
* * * * * * *
1386519 CACCCTTTAGTCCTTAAAAAGTAGGATG-CTTTTT-TTTTCAAAAGTCCACACGGGTCGGTGG
1 CACCCTTTAGTCCTCAAAGAGCAGGACGCCTTTTTCTTTTC-AAAGCCCACACGAGTTGGTGG
* * * * * * * *
1386580 CTCCCTTTAGCCCTCAAAAAGTAGGACACCTTTTTCGTTTCAAACCCCACACGAGTCGGTGG
1 CACCCTTTAGTCCTCAAAGAGCAGGACGCCTTTTTCTTTTCAAAGCCCACACGAGTTGGTGG
* * * * * * *
1386642 CACCTTTTAGTCCTCAAAGAGTAGGACACCTTTTTCCTTTCAAAACCCACACAATTTGGTGG
1 CACCCTTTAGTCCTCAAAGAGCAGGACGCCTTTTTCTTTTCAAAGCCCACACGAGTTGGTGG
* * * * * *
1386704 CACCCTTTATTCTTCAAAGAGCAAGATGCCTTTTTCCTTTCAAAACCCACACGAGTTGGTGG
1 CACCCTTTAGTCCTCAAAGAGCAGGACGCCTTTTTCTTTTCAAAGCCCACACGAGTTGGTGG
** * * * * * *
1386766 CACCCTTTAGTCCTTGAAGGGGAGGACACCTTTTTCCTTTT-AAAGCCCAAACGAGTAGATGG
1 CACCCTTTAGTCCTCAAAGAGCAGGACGCCTTTTT-CTTTTCAAAGCCCACACGAGTTGGTGG
** * * * * * * * *
1386828 CATTCTTTTGTCTTGAAAGAGCAAGACACTTTTTTCTTTTCAAAGCCCACTCAAGTTGGTGG
1 CACCCTTTAGTCCTCAAAGAGCAGGACGCCTTTTTCTTTTCAAAGCCCACACGAGTTGGTGG
* * *
1386890 CA-CCTTGTAGTCCTCAAATAGTAGGACGCCTTTTT-TGTTTCAAAGCCCACACGAGTTGGTTG
1 CACCCTT-TAGTCCTCAAAGAGCAGGACGCCTTTTTCT-TTTCAAAGCCCACACGAGTTGGTGG
* * * * * * * ** * *
1386952 CAACATTTAGTCCTCAAAGAGTAGGATGCTTTTTTCCTATCAAAATCCACACGGGTTTGTGG
1 CACCCTTTAGTCCTCAAAGAGCAGGACGCCTTTTTCTTTTCAAAGCCCACACGAGTTGGTGG
** * * * *
1387014 C-CTTATTTTGTCCTCAAAGAGTAGGACACCTTTTTCTTTTCAAAGCCCACACGTGTTGGTGG
1 CAC-CCTTTAGTCCTCAAAGAGCAGGACGCCTTTTTCTTTTCAAAGCCCACACGAGTTGGTGG
* * * *
1387076 CACCCTTTAGTCCTCAATGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACTCGAGTTTGTGG
1 CACCCTTTAGTCCTCAAAGAGCAGGACGCCTTTTTCTTTTCAAAGCCCACACGAGTTGGTGG
* * * * * ** *
1387138 CATCCTTTAGTTCTCAAAGAGCAGGATGCCTTTTTCCTTTCAAAGCTCATGCGAGTTGATGG
1 CACCCTTTAGTCCTCAAAGAGCAGGACGCCTTTTTCTTTTCAAAGCCCACACGAGTTGGTGG
* * * * *
1387200 CACCCTTCAGTCCTCAAAGAGTAGGATGCCTTTTTCCTTTCAAA-CCCTGCACGAGTTGGTGG
1 CACCCTTTAGTCCTCAAAGAGCAGGACGCCTTTTTCTTTTCAAAGCCC-ACACGAGTTGGTGG
* * * *
1387262 CACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTTTCCTTTCAAAGCCCACACGGGTCGGTGG
1 CACCCTTTAGTCCTCAAAGAGCAGGACGCCTTTTTCTTTTCAAAGCCCACACGAGTTGGTGG
* * * * * * * * * *
1387324 CTCCCATTAGCCCTCAAAAAGCAGGACACATTTTTCCTCTCAAAGCCCACATGAGTTGGTCG
1 CACCCTTTAGTCCTCAAAGAGCAGGACGCCTTTTTCTTTTCAAAGCCCACACGAGTTGGTGG
* * * * *** * *
1387386 CACCCTTTAGCCCTCAAAGAGTAGGACACCTTTTTCCTTTCAAAGTTGATACAAGTTGGTGG
1 CACCCTTTAGTCCTCAAAGAGCAGGACGCCTTTTTCTTTTCAAAGCCCACACGAGTTGGTGG
** * * * * *
1387448 CTTCCATTAGTCCTCAAAGAGCAGGATGCTTTTTTC-TTTCAAAGGCCAAACGAGTTGGTGG
1 CACCCTTTAGTCCTCAAAGAGCAGGACGCCTTTTTCTTTTCAAAGCCCACACGAGTTGGTGG
** * * * * *
1387509 CATTCTTTTGT-CTGGAAAGAGTC-GGACG-CTTCTTT-TTTTTAAAGCTCACA-TAGGTTGGTG
1 CACCCTTTAGTCCT-CAAAGAG-CAGGACGCCTT-TTTCTTTTCAAAGCCCACACGA-GTTGGTG
1387569 G
62 G
* * * * *
1387570 CACCTTTTAGTCC-CTAAAGAGAAGGAC-CCATTTTTGTTTTCAAAGCCCACAAGAGTTGGCGG
1 CACCCTTTAGTCCTC-AAAGAGCAGGACGCC-TTTTTCTTTTCAAAGCCCACACGAGTTGGTGG
** * * * *
1387632 CACCCTTTAGTCCTCAAAGAATAGGATGTCTTTTTAC-TTTCGAAGCCCACATGAGTTGGTGG
1 CACCCTTTAGTCCTCAAAGAGCAGGACGCCTTTTT-CTTTTCAAAGCCCACACGAGTTGGTGG
* * * * * * *
1387694 CACTCTTTACTCCTCAAAAAGCCA-TAAGCCTTTTTCTTTTCAAAGCCCACACAAGTTGGTGT
1 CACCCTTTAGTCCTCAAAGAG-CAGGACGCCTTTTTCTTTTCAAAGCCCACACGAGTTGGTGG
* * * ** * * *
1387756 CACCCTTTTGTTCTCAAAGTGTGGGACACCTTTTTCCTTTCAATGCCCACACGAGTTGGTGG
1 CACCCTTTAGTCCTCAAAGAGCAGGACGCCTTTTTCTTTTCAAAGCCCACACGAGTTGGTGG
* * * * * * * *
1387818 CACTCATTAGTCCTCAAAAAGTAGGACACTTTTTTCCTTTCAAAGCCCACACGGGTTGGTGG
1 CACCCTTTAGTCCTCAAAGAGCAGGACGCCTTTTTCTTTTCAAAGCCCACACGAGTTGGTGG
* * * * * * * * * * *
1387880 CACCTTTTAGTCCACAAAAAACAGGATGCCTTTTTCTTTTCAGAGCCTAGATGGGTTGATGG
1 CACCCTTTAGTCCTCAAAGAGCAGGACGCCTTTTTCTTTTCAAAGCCCACACGAGTTGGTGG
* * *
1387942 CACCCATTAGTCCTCAAAGATCAGGATGCCTTTTTCTTTTCAAAGCCCACACGAGTTGGTGG
1 CACCCTTTAGTCCTCAAAGAGCAGGACGCCTTTTTCTTTTCAAAGCCCACACGAGTTGGTGG
* * * * * * * * *
1388004 CACCCTTTAGTCCTCAAAAAGTAGGATGCCATATTCGTTTCAAAACCTACACTG-GTTAGTGG
1 CACCCTTTAGTCCTCAAAGAGCAGGACGCCTTTTTCTTTTCAAAGCCCACAC-GAGTTGGTGG
* * * * * * *
1388066 CTCCTTTTTGTCCTCAAAGAGCAGGACACCTTTTTCTTTTCGAAGCCCACATGCGTTGGTGG
1 CACCCTTTAGTCCTCAAAGAGCAGGACGCCTTTTTCTTTTCAAAGCCCACACGAGTTGGTGG
* * *** ** *
1388128 CACCCTTTAGTCCTCAGAGAGCAAGACATATTTTTCCTTTT-AAAGCTTACATGAGTTGGTGG
1 CACCCTTTAGTCCTCAAAGAGCAGGACGCCTTTTT-CTTTTCAAAGCCCACACGAGTTGGTGG
* * * * * * ** *
1388190 CACCCTTTAATTCTGAAAGAGTAGGATGCCTTTTTCCTTTCAAAGCCTGCACTAGTTGGTGG
1 CACCCTTTAGTCCTCAAAGAGCAGGACGCCTTTTTCTTTTCAAAGCCCACACGAGTTGGTGG
* * *
1388252 CACCCTTTAGTCCTTAAAGAGCAAGATGCCTT
1 CACCCTTTAGTCCTCAAAGAGCAGGACGCCTT
1388284 CTTGAGTGGC
Statistics
Matches: 4849, Mismatches: 928, Indels: 249
0.80 0.15 0.04
Matches are distributed among these distances:
57 69 0.01
58 21 0.00
59 8 0.00
60 66 0.01
61 545 0.11
62 4015 0.83
63 117 0.02
64 8 0.00
ACGTcount: A:0.24, C:0.26, G:0.20, T:0.30
Consensus pattern (62 bp):
CACCCTTTAGTCCTCAAAGAGCAGGACGCCTTTTTCTTTTCAAAGCCCACACGAGTTGGTGG
Found at i:1388396 original size:164 final size:165
Alignment explanation
Indices: 1388124--1388436 Score: 412
Period size: 164 Copynumber: 1.9 Consensus size: 165
1388114 ACATGCGTTG
* * * ** *
1388124 GTGGCACCCTTTAGTCCTCAGAGAGCAAGACATATTTTTCCTTTTAAAGCTTACATGAGTTGGTG
1 GTGGCACCCTTTAGTCCTCAAAGAGCAAGACACATTTTTCCTTTCAAAGCCCACATCAGTTGGTG
* * * * ** * * *
1388189 GCACCCTTTAATTCTGAAAGAGTAGGATGCCTTTTTCCTTTCAAAGCCTGCACTAGTTGGTGGCA
66 GCACCCTTTAATCCTCAAAGAGCAAGACACCTTTTTCCTTTCAAAGCCTACACGAGTTGCTGGCA
1388254 CCCTTTAGTCCTTAAAGAGCAAGATGCCTTCTTGA
131 CCCTTTAGTCCTTAAAGAGCAAGATGCCTTCTTGA
* ** *
1388289 GTGGCACCCTTTAGTCCTCAAAGTGCAAGATGCCTTTTTCCTTTCAAAGCCCACA-CAGTTGGTG
1 GTGGCACCCTTTAGTCCTCAAAGAGCAAGACACATTTTTCCTTTCAAAGCCCACATCAGTTGGTG
* *
1388353 GCACCCTTTAGTCCTCCAAGAGCAAGACACCTTTTTCCTTTCAAAGCCTACACGAGTTGCTGGCA
66 GCACCCTTTAATCCTCAAAGAGCAAGACACCTTTTTCCTTTCAAAGCCTACACGAGTTGCTGGCA
* *
1388418 CCTTTTAGTCCTTGAAGAG
131 CCCTTTAGTCCTTAAAGAG
1388437 TAGGACACCT
Statistics
Matches: 125, Mismatches: 23, Indels: 1
0.84 0.15 0.01
Matches are distributed among these distances:
164 79 0.63
165 46 0.37
ACGTcount: A:0.24, C:0.26, G:0.20, T:0.31
Consensus pattern (165 bp):
GTGGCACCCTTTAGTCCTCAAAGAGCAAGACACATTTTTCCTTTCAAAGCCCACATCAGTTGGTG
GCACCCTTTAATCCTCAAAGAGCAAGACACCTTTTTCCTTTCAAAGCCTACACGAGTTGCTGGCA
CCCTTTAGTCCTTAAAGAGCAAGATGCCTTCTTGA
Found at i:1388444 original size:62 final size:62
Alignment explanation
Indices: 1388289--1389191 Score: 1068
Period size: 62 Copynumber: 14.6 Consensus size: 62
1388279 GCCTTCTTGA
* *
1388289 GTGGCACCCTTTAGTCCTCAAAGTGCAAGATGCCTTTTTCCTTTCAAAGCCCACAC-AGTTG
1 GTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTTTCCTTTCAAAGCCCACACGAGTTG
* * ** *
1388350 GTGGCACCCTTTAGTCCTCCAAGAGCAAGACACCTTTTTCCTTTCAAAGCCTACACGAGTTG
1 GTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTTTCCTTTCAAAGCCCACACGAGTTG
* * ** * ** *
1388412 CTGGCACCTTTTAGTCCTTGAAGAGTAGGACACCTTTTTCCTTTCAAAGCCCACACGTGTTG
1 GTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTTTCCTTTCAAAGCCCACACGAGTTG
* * ** * *
1388474 GTGGCACCCTTTAGTCCTCAAAGAGCAAGACGTGTTTTTCCTTTTAAAGCCCACATGAGTTG
1 GTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTTTCCTTTCAAAGCCCACACGAGTTG
*
1388536 GTGGCACCCTTTAGTTCTCAAAGAGCAGGATGCCTTTTTCCTTTCAAAGCCCACACGAGTTG
1 GTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTTTCCTTTCAAAGCCCACACGAGTTG
* * * * * *
1388598 GTGGCACCCTTTAGTCTTCAAAAAGCAGAAAGCCTTTTTCCTTTCAAAGCCCACA-TAGTTA
1 GTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTTTCCTTTCAAAGCCCACACGAGTTG
* * * * **
1388659 GCGGCAGCCTTTAGTCCTCAAAAAGCAGGACGCC-TTTTCCTTTTCAAAGCCTGCAC-AGTTG
1 GTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTTTCC-TTTCAAAGCCCACACGAGTTG
* * * * * * * *
1388720 GTAGCACCTTTTAGTCCTCAAAGAGCCGGATGCCTTTTTCTTTTCAGAGCCCAGATGGGTTG
1 GTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTTTCCTTTCAAAGCCCACACGAGTTG
* *
1388782 GTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTTTCTTTTCAAAGCCCACACGAGTTT
1 GTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTTTCCTTTCAAAGCCCACACGAGTTG
* * * * * * * *
1388844 GTGGCCCCCTTTAGTCCTTAAAAAGTAGCATGCCTTTTTCGTTTCAAAACCCACACGGGTTG
1 GTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTTTCCTTTCAAAGCCCACACGAGTTG
* * * * * * *
1388906 GTGG-TCCATTTTGTCCTCAAAGAGTAGGA-GATCTTTTT-CTTTCCAAAGCTCACACGTGTTG
1 GTGGCACCCTTTAGTCCTCAAAGAGCAGGATG-CCTTTTTCCTTT-CAAAGCCCACACGAGTTG
* * * * ** *
1388967 TTGGCACCCTTTAGCCCTCAAAGAGCAAGACGTATTTTTCCTTTCAAAGCCCACACAAGTTG
1 GTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTTTCCTTTCAAAGCCCACACGAGTTG
1389029 GTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTTTCCTTTCAAAG-CCAGCACGAGTTG
1 GTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTTTCCTTTCAAAGCCCA-CACGAGTTG
* *
1389091 GTGGCACCCTTCAGTCCTCTAAA-AGTAGGATGCCTTTTTCCTTTCAAAGCCCACACGAGTTG
1 GTGGCACCCTTTAGTCCTC-AAAGAGCAGGATGCCTTTTTCCTTTCAAAGCCCACACGAGTTG
* *
1389153 GTGGCACCCTTTAGTCCTCAAAGAGTAGGAAGCCTTTTT
1 GTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTTT
1389192 GAGTGGCACC
Statistics
Matches: 717, Mismatches: 111, Indels: 27
0.84 0.13 0.03
Matches are distributed among these distances:
60 10 0.01
61 186 0.26
62 510 0.71
63 11 0.02
ACGTcount: A:0.23, C:0.27, G:0.20, T:0.30
Consensus pattern (62 bp):
GTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTTTCCTTTCAAAGCCCACACGAGTTG
Found at i:1388476 original size:226 final size:226
Alignment explanation
Indices: 1388061--1388503 Score: 606
Period size: 226 Copynumber: 2.0 Consensus size: 226
1388051 TACACTGGTT
* * * * * *
1388061 AGTGGCTCCTTTTTGTCCTCAAAGAGCAGGACACCTTTTTCTTTTCGAAGCCCACATGCGTTGGT
1 AGTGGCACCCTTTAGTCCTCAAAGAGCAAGACACCTTTTTCCTTTCAAAGCCCACA-GCGTTGGT
* * * * *
1388126 GGCACCCTTTAGTCCTCAGAGAGCAAGACATATTTTTCCTTTTAAAGCTTACATGAGTTGGTGGC
65 GGCACCCTTTAGTCCTCAGAGAGCAAGACACATTTTTCCTTTCAAAGCCTACACGAGTTGCTGGC
* ** **
1388191 ACCCTTTAATTCTGAAAGAGTAGGATGCCTTTTTCCTTTCAAAGCCTGCACTAGTTGGTGGCACC
130 ACCCTTTAATCCTGAAAGAGTAGGACACCTTTTTCCTTTCAAAGCCCACACTAGTTGGTGGCACC
*
1388256 CTTTAGTCCTTAAAGAGCAAGATGCCTTCTTG
195 CTTTAGTCCTCAAAGAGCAAGATGCCTTCTTG
* **
1388288 AGTGGCACCCTTTAGTCCTCAAAGTGCAAGATGCCTTTTTCCTTTCAAAGCCCACA-CAGTTGGT
1 AGTGGCACCCTTTAGTCCTCAAAGAGCAAGACACCTTTTTCCTTTCAAAGCCCACAGC-GTTGGT
*
1388352 GGCACCCTTTAGTCCTCCA-AGAGCAAGACACCTTTTTCCTTTCAAAGCCTACACGAGTTGCTGG
65 GGCACCCTTTAGTCCT-CAGAGAGCAAGACACATTTTTCCTTTCAAAGCCTACACGAGTTGCTGG
* *
1388416 CACCTTTTAGTCCTTG-AAGAGTAGGACACCTTTTTCCTTTCAAAGCCCACACGT-GTTGGTGGC
129 CACCCTTTAATCC-TGAAAGAGTAGGACACCTTTTTCCTTTCAAAGCCCACAC-TAGTTGGTGGC
1388479 ACCCTTTAGTCCTCAAAGAGCAAGA
192 ACCCTTTAGTCCTCAAAGAGCAAGA
1388504 CGTGTTTTTC
Statistics
Matches: 189, Mismatches: 23, Indels: 9
0.86 0.10 0.04
Matches are distributed among these distances:
225 1 0.01
226 136 0.72
227 52 0.28
ACGTcount: A:0.23, C:0.26, G:0.20, T:0.31
Consensus pattern (226 bp):
AGTGGCACCCTTTAGTCCTCAAAGAGCAAGACACCTTTTTCCTTTCAAAGCCCACAGCGTTGGTG
GCACCCTTTAGTCCTCAGAGAGCAAGACACATTTTTCCTTTCAAAGCCTACACGAGTTGCTGGCA
CCCTTTAATCCTGAAAGAGTAGGACACCTTTTTCCTTTCAAAGCCCACACTAGTTGGTGGCACCC
TTTAGTCCTCAAAGAGCAAGATGCCTTCTTG
Found at i:1389198 original size:41 final size:41
Alignment explanation
Indices: 1389153--1389232 Score: 124
Period size: 41 Copynumber: 2.0 Consensus size: 41
1389143 ACACGAGTTG
* *
1389153 GTGGCACCCTTTAGTCCTCAAAGAGTAGGAAGCCTTTTTGA
1 GTGGCACCCTTTAGTCCTCAAAGAGGAAGAAGCCTTTTTGA
* *
1389194 GTGGCACCCTTTAGTTCTCAAAGAGGAAGACGCCTTTTT
1 GTGGCACCCTTTAGTCCTCAAAGAGGAAGAAGCCTTTTT
1389233 CTTTTCAAAG
Statistics
Matches: 35, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
41 35 1.00
ACGTcount: A:0.24, C:0.23, G:0.24, T:0.30
Consensus pattern (41 bp):
GTGGCACCCTTTAGTCCTCAAAGAGGAAGAAGCCTTTTTGA
Found at i:1389316 original size:164 final size:165
Alignment explanation
Indices: 1389029--1389346 Score: 444
Period size: 164 Copynumber: 1.9 Consensus size: 165
1389019 ACACAAGTTG
* * *
1389029 GTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTTTCCTTTCAAAGCCAGCACGAGTTGGTG
1 GTGGCACCCTTTAGTCCTCAAAGAGCAAGACGCCTTTTTCCTTTCAAAGCCAGCACGAGTTGGGG
* * ** *
1389094 GCACCCTTCAGTCCTCTAAAAGTAGGATGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCA
66 GCACCCTTCAGTCCTCTAAAAGCAAGACACCTTTTTCCTTTCAAAGCCCACACGAGTTGCTGGCA
1389159 CCCTTTAGTCCTCAAAGAGTAGGAAGCCTTTTTGA
131 CCCTTTAGTCCTCAAAGAGTAGGAAGCCTTTTTGA
* * *
1389194 GTGGCACCCTTTAGTTCTCAAAGAGGAAGACGCCTTTTTCTTTTCAAAGCCCA-CAC-AGTTGGG
1 GTGGCACCCTTTAGTCCTCAAAGAGCAAGACGCCTTTTTCCTTTCAAAG-CCAGCACGAGTTGGG
* ** *
1389257 GGCACCCTTTAGTCCTC-AAAGAGCAAGACATTTTTTTCCTTTCAAAGCCGACACGAGTTGCTGG
65 GGCACCCTTCAGTCCTCTAAA-AGCAAGACACCTTTTTCCTTTCAAAGCCCACACGAGTTGCTGG
**
1389321 CACCCTTTAGTCCTTGAAGAGTAGGA
129 CACCCTTTAGTCCTCAAAGAGTAGGA
1389347 CACTTTTTTC
Statistics
Matches: 134, Mismatches: 17, Indels: 5
0.86 0.11 0.03
Matches are distributed among these distances:
163 3 0.02
164 81 0.60
165 47 0.35
166 3 0.02
ACGTcount: A:0.24, C:0.26, G:0.22, T:0.28
Consensus pattern (165 bp):
GTGGCACCCTTTAGTCCTCAAAGAGCAAGACGCCTTTTTCCTTTCAAAGCCAGCACGAGTTGGGG
GCACCCTTCAGTCCTCTAAAAGCAAGACACCTTTTTCCTTTCAAAGCCCACACGAGTTGCTGGCA
CCCTTTAGTCCTCAAAGAGTAGGAAGCCTTTTTGA
Found at i:1389341 original size:62 final size:62
Alignment explanation
Indices: 1389194--1391206 Score: 1726
Period size: 62 Copynumber: 32.6 Consensus size: 62
1389184 GCCTTTTTGA
* * * * *
1389194 GTGGCACCCTTTAGTTCTCAAAGAGGAAGACGCCTTTTTCTTTTCAAAGCCCACAC-AGTTG
1 GTGGCACCCTTTAGTCCTCAAAGAGCAGGACACCTTTTTCCTTTCAAAGCCCACACGAGTTG
* * ** *
1389255 GGGGCACCCTTTAGTCCTCAAAGAGCAAGACATTTTTTTCCTTTCAAAGCCGACACGAGTTG
1 GTGGCACCCTTTAGTCCTCAAAGAGCAGGACACCTTTTTCCTTTCAAAGCCCACACGAGTTG
* ** * * * **
1389317 CTGGCACCCTTTAGTCCTTGAAGAGTAGGACACTTTTTTCTTTTCAAAGCCCACTTGAGTTG
1 GTGGCACCCTTTAGTCCTCAAAGAGCAGGACACCTTTTTCCTTTCAAAGCCCACACGAGTTG
* * *
1389379 GTGGCACCCTTTAGTCCTCAAAGAGTAAGACACCTTTTTCCTTTCAAAGCCCACACTAGTTG
1 GTGGCACCCTTTAGTCCTCAAAGAGCAGGACACCTTTTTCCTTTCAAAGCCCACACGAGTTG
* * * ** * * *
1389441 GTGGCAGCCTTTGGTCCTCAAAGAGTAGGATGCCTTTTTCCTATT-AAAACTCACACGGGTTG
1 GTGGCACCCTTTAGTCCTCAAAGAGCAGGACACCTTTTTCCT-TTCAAAGCCCACACGAGTTG
** * * * * *
1389503 GTGGC-CTTATTTTGTCCTCAAAGAGTAGGACACCTTTTTCTTTTCAACGCCCGCACGAGTTG
1 GTGGCAC-CCTTTAGTCCTCAAAGAGCAGGACACCTTTTTCCTTTCAAAGCCCACACGAGTTG
* * ** * * *
1389565 GTGGCACACTTTAGTCCTCTAAGAGCAGGACGTCTTTTTCCTTTCAAAGCCCACATGGGTCG
1 GTGGCACCCTTTAGTCCTCAAAGAGCAGGACACCTTTTTCCTTTCAAAGCCCACACGAGTTG
* * * * * * * * *
1389627 GGGGCTCCCGTTAGCCCTCAAAAAGTAGGACACCTTTTTCCTCTCAAAGGCCACATGAGTTG
1 GTGGCACCCTTTAGTCCTCAAAGAGCAGGACACCTTTTTCCTTTCAAAGCCCACACGAGTTG
* * * * * * *
1389689 GTCGCACCCTTTAGCCCTCAAAGAGTAGGACACCTTTTTCTTTTGAAAGTCGACACGAGTTG
1 GTGGCACCCTTTAGTCCTCAAAGAGCAGGACACCTTTTTCCTTTCAAAGCCCACACGAGTTG
* * ** * * * *
1389751 GTGGCTCCTTTTAGTCCTTTAAGAGCAGGAC-GCTTTTTTCTTTCAAAGCCCAAACAAGTTG
1 GTGGCACCCTTTAGTCCTCAAAGAGCAGGACACCTTTTTCCTTTCAAAGCCCACACGAGTTG
** * * * * * ** * * *
1389812 GTGGCATTCTTTTGT-CTGGAAAAAGCCGGAC-GCTTTTTTTTTTAAAAGCTCACA-TAGGTTG
1 GTGGCACCCTTTAGTCCT-CAAAGAGCAGGACACCTTTTTCCTTTCAAAGCCCACACGA-GTTG
* * *
1389873 GTGGCACCCTTTAGTCCTCAAATAG-AGGACACATTTTT--TTTCAAAGCCCACTCGAGTTG
1 GTGGCACCCTTTAGTCCTCAAAGAGCAGGACACCTTTTTCCTTTCAAAGCCCACACGAGTTG
* * ** * **
1389932 GTGGCACCCTTTAATCCTCAAAGTA-TAGGATGCCTTTTTCCTTTCAAAACGTACACGAGTTG
1 GTGGCACCCTTTAGTCCTCAAAG-AGCAGGACACCTTTTTCCTTTCAAAGCCCACACGAGTTG
* * * * *
1389994 GTGGCACTCTTTACTCCTCAAAGAGTCA-GA-AGCTTTTTTCTTTTCAAAGCCCACACAAGTTG
1 GTGGCACCCTTTAGTCCTCAAAGAG-CAGGACA-CCTTTTTCCTTTCAAAGCCCACACGAGTTG
* * ** * * * * *
1390056 GTGGCACCCTTTTGTTCTCAAAGAGTGGGACACCATTTTCTTTTCAATGGCCACGCGAGTTG
1 GTGGCACCCTTTAGTCCTCAAAGAGCAGGACACCTTTTTCCTTTCAAAGCCCACACGAGTTG
* * ** * *
1390118 GTGGCACCCTTTAGTCCTCATAGAGTAGGATGCCTTTTTCCTTTCAATGCCCGCACGAGTTG
1 GTGGCACCCTTTAGTCCTCAAAGAGCAGGACACCTTTTTCCTTTCAAAGCCCACACGAGTTG
* ** * *
1390180 GTGGCA-CCTTTAGTCCTCAAAGAGTAGGATGCCTTTTTCCTTTCAAAGCCCACACGGGTCG
1 GTGGCACCCTTTAGTCCTCAAAGAGCAGGACACCTTTTTCCTTTCAAAGCCCACACGAGTTG
* * * * * * *
1390241 GTGGCTCCCGTTAGCCCTCAAAAAGCAGGACACCTTTTTGCTCTCAAAGCCCACATGAGTTG
1 GTGGCACCCTTTAGTCCTCAAAGAGCAGGACACCTTTTTCCTTTCAAAGCCCACACGAGTTG
* * * ** * * * *
1390303 GTTGCACCCTTTAGCCCTCAAACAGTTGGACACCTTTTTCTTTTCAAAGTCGACGCGAGTTG
1 GTGGCACCCTTTAGTCCTCAAAGAGCAGGACACCTTTTTCCTTTCAAAGCCCACACGAGTTG
* * * ** * * *
1390365 GTGGCTCCCTTTAGTCCTCAAAAAGCACGA-TGCTTTTTTCTTTCAAAGCCCAAATGAGTTG
1 GTGGCACCCTTTAGTCCTCAAAGAGCAGGACACCTTTTTCCTTTCAAAGCCCACACGAGTTG
** * * ** * *
1390426 GTGGCATTCTTTTGT-CTGGAAAGAGTGGGATGCTTCC-TTTT--TTT-AAAGCTCACAC-AGGT
1 GTGGCACCCTTTAGTCCT-CAAAGAGCAGGA--C-ACCTTTTTCCTTTCAAAGCCCACACGA-GT
1390485 TG
61 TG
* * * * **
1390487 GTGGCACCCTTTAGTCTTCAAAGAGAAGGAAACATTTTTGTTTTCAAAGCCCA-ACGAGTTG
1 GTGGCACCCTTTAGTCCTCAAAGAGCAGGACACCTTTTTCCTTTCAAAGCCCACACGAGTTG
* **
1390548 GTGGCACCCTTTAGTCCTCAAAGAACAGGATGCCTTTTTCCTTTCAAAGCCCACACGAGTTG
1 GTGGCACCCTTTAGTCCTCAAAGAGCAGGACACCTTTTTCCTTTCAAAGCCCACACGAGTTG
* * * *
1390610 GTGCCACTCTTTACTCCTCAAAGAGCCA-GA-AGCC-TTTTCCTTTTCAAAGCCCATAC-AGGTT
1 GTGGCACCCTTTAGTCCTCAAAGAG-CAGGACA-CCTTTTTCC-TTTCAAAGCCCACACGA-GTT
1390671 G
62 G
* * * ** * *
1390672 GTGGCACCCTTTTGTTCTCAGAGAGTGGGATACCTTTTTCCTTTCAATGCCCACACGAGTTG
1 GTGGCACCCTTTAGTCCTCAAAGAGCAGGACACCTTTTTCCTTTCAAAGCCCACACGAGTTG
* * *
1390734 GTGGCACTCTTTAGTCCTCAAAAAGCAAGACACCTTTTTCCTTTCAAAGCCCACAC-AGGTTG
1 GTGGCACCCTTTAGTCCTCAAAGAGCAGGACACCTTTTTCCTTTCAAAGCCCACACGA-GTTG
* * * * ** * * * *
1390796 GTGGCACCCTCTAGTCCACAAAGGGTAGGATGCCTTTTT-CTTTTAAGAGCCCAGATGTGTTG
1 GTGGCACCCTTTAGTCCTCAAAGAGCAGGACACCTTTTTCCTTTCAA-AGCCCACACGAGTTG
* * * * ** *
1390858 ATGGCACCTTTTAGTACTCAAAGAGCAAGATGCCTTTTTCCTTTTAAAGCCCACACGAGTTG
1 GTGGCACCCTTTAGTCCTCAAAGAGCAGGACACCTTTTTCCTTTCAAAGCCCACACGAGTTG
* * * * * * * *
1390920 GTGGCACCCTTTAGTCCTTAAAAAGTAGGATACCTTTTTCGTTTCAAAACCTACACGGGTTG
1 GTGGCACCCTTTAGTCCTCAAAGAGCAGGACACCTTTTTCCTTTCAAAGCCCACACGAGTTG
* * * * * * *
1390982 GTAGCTCCATTTTGTCCTCAAAGAGCAGGACACCTTTTTCTTTTCAAAGCCCACACGTGTTT
1 GTGGCACCCTTTAGTCCTCAAAGAGCAGGACACCTTTTTCCTTTCAAAGCCCACACGAGTTG
* *** *
1391044 GTGGCACCCTTTAGTCCTCAAAGAGCAAGACGTATTTTTCCTTTTC-AAGCCCACACTAGTTG
1 GTGGCACCCTTTAGTCCTCAAAGAGCAGGACACCTTTTTCC-TTTCAAAGCCCACACGAGTTG
* * ** * *
1391106 GTGGCACCCTTTAGTTCTCAAAGAGCATGATGCCTTTTTCCTTTCAATGCCCGCACGAGTTG
1 GTGGCACCCTTTAGTCCTCAAAGAGCAGGACACCTTTTTCCTTTCAAAGCCCACACGAGTTG
* *
1391168 GTAGCACCCTTTAGTCCTCAAAGAGCAGGATACCTTTTT
1 GTGGCACCCTTTAGTCCTCAAAGAGCAGGACACCTTTTT
1391207 GAGTGGCACC
Statistics
Matches: 1557, Mismatches: 348, Indels: 93
0.78 0.17 0.05
Matches are distributed among these distances:
58 1 0.00
59 40 0.03
60 22 0.01
61 337 0.22
62 1125 0.72
63 26 0.02
64 4 0.00
65 2 0.00
ACGTcount: A:0.23, C:0.25, G:0.20, T:0.31
Consensus pattern (62 bp):
GTGGCACCCTTTAGTCCTCAAAGAGCAGGACACCTTTTTCCTTTCAAAGCCCACACGAGTTG
Found at i:1389364 original size:226 final size:227
Alignment explanation
Indices: 1388968--1389405 Score: 648
Period size: 226 Copynumber: 1.9 Consensus size: 227
1388958 CACGTGTTGT
* *
1388968 TGGCACCCTTTAGCCCTCAAAGAGCAAGACGTATTTTTCCTTTCAAAGCCCACACAAGTTGGTGG
1 TGGCACCCTTTAGCCCTCAAAGAGCAAGACGCATTTTTCCTTTCAAAGCCCACACAAGTTGGGGG
* ** *
1389033 CACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTTTCCTTTCAAAGCCAGCACGAGTTGGTGGCAC
66 CACCCTTTAGTCCTCAAAGAGCAAGACACCTTTTTCCTTTCAAAGCCAGCACGAGTTGCTGGCAC
**
1389098 CCTTCAGTCCTCTAAAAGTAGGATGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCT
131 CCTTCAGTCCTCTAAAAGTAGGACACCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCT
1389163 TTAGTCCTCAAAGAGTAGGAAGCCTTTTTGAG
196 TTAGTCCTCAAAGAGTAGGAAGCCTTTTTGAG
** * * *
1389195 TGGCACCCTTTAGTTCTCAAAGAGGAAGACGCCTTTTTCTTTTCAAAGCCCACAC-AGTTGGGGG
1 TGGCACCCTTTAGCCCTCAAAGAGCAAGACGCATTTTTCCTTTCAAAGCCCACACAAGTTGGGGG
**
1389259 CACCCTTTAGTCCTCAAAGAGCAAGACATTTTTTTCCTTTCAAAGCC-GACACGAGTTGCTGGCA
66 CACCCTTTAGTCCTCAAAGAGCAAGACACCTTTTTCCTTTCAAAGCCAG-CACGAGTTGCTGGCA
* * * * **
1389323 CCCTTTAGTCCT-TGAAGAGTAGGACACTTTTTTCTTTTCAAAGCCCACTTGAGTTGGTGGCACC
130 CCCTTCAGTCCTCT-AAAAGTAGGACACCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACC
1389387 CTTTAGTCCTCAAAGAGTA
194 CTTTAGTCCTCAAAGAGTA
1389406 AGACACCTTT
Statistics
Matches: 188, Mismatches: 21, Indels: 5
0.88 0.10 0.02
Matches are distributed among these distances:
225 2 0.01
226 137 0.73
227 49 0.26
ACGTcount: A:0.24, C:0.26, G:0.20, T:0.29
Consensus pattern (227 bp):
TGGCACCCTTTAGCCCTCAAAGAGCAAGACGCATTTTTCCTTTCAAAGCCCACACAAGTTGGGGG
CACCCTTTAGTCCTCAAAGAGCAAGACACCTTTTTCCTTTCAAAGCCAGCACGAGTTGCTGGCAC
CCTTCAGTCCTCTAAAAGTAGGACACCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCT
TTAGTCCTCAAAGAGTAGGAAGCCTTTTTGAG
Found at i:1391330 original size:164 final size:165
Alignment explanation
Indices: 1391044--1391370 Score: 433
Period size: 164 Copynumber: 2.0 Consensus size: 165
1391034 ACACGTGTTT
* * *
1391044 GTGGCACCCTTTAGTCCTCAAAGAGCAAGACGTATTTTTCCTTTTCAAGCCCACACTAGTTGGTG
1 GTGGCACCCTTCAGTCCTCAAAGAGCAAGACGCATTTTTCCTTTTCAAGCCCACACTAATTGGTG
* * * ** * * * *
1391109 GCACCCTTTAGTTCTCAAAGAGCATGATGCCTTTTTCCTTTCAATGCCCGCACGAGTTGGTAGCA
66 GCACCCTTTAGTCCTCAAAAAGCAAGACACATTTTTCCTTTCAAAGCCCACACGAGTTGCTAGCA
*
1391174 CCCTTTAGTCCTCAAAGAGCAGGATACCTTTTTGA
131 CCCTTTAGTCCTCAAAGAGCAGGACACCTTTTTGA
* * *
1391209 GTGGCACCCTTCAGTCCTCAAAGAGCAAGATGCCTTTTTCC-TTTCAAAGCCTACAC-AATTGGT
1 GTGGCACCCTTCAGTCCTCAAAGAGCAAGACGCATTTTTCCTTTTC-AAGCCCACACTAATTGGT
* * *
1391272 GGCACCCTTTAGTCCTCAAAAAGCAAGACACATTTTTCCTTTCAAAGCCTACACGAGTTTCTGGC
65 GGCACCCTTTAGTCCTCAAAAAGCAAGACACATTTTTCCTTTCAAAGCCCACACGAGTTGCTAGC
** *
1391337 ACCCTTTAGTCCTTGAAGAGTAGGACACCTTTTT
130 ACCCTTTAGTCCTCAAAGAGCAGGACACCTTTTT
1391371 CTTTTCAAAG
Statistics
Matches: 139, Mismatches: 22, Indels: 3
0.85 0.13 0.02
Matches are distributed among these distances:
164 93 0.67
165 46 0.33
ACGTcount: A:0.24, C:0.27, G:0.18, T:0.30
Consensus pattern (165 bp):
GTGGCACCCTTCAGTCCTCAAAGAGCAAGACGCATTTTTCCTTTTCAAGCCCACACTAATTGGTG
GCACCCTTTAGTCCTCAAAAAGCAAGACACATTTTTCCTTTCAAAGCCCACACGAGTTGCTAGCA
CCCTTTAGTCCTCAAAGAGCAGGACACCTTTTTGA
Found at i:1391364 original size:62 final size:62
Alignment explanation
Indices: 1391209--1392110 Score: 997
Period size: 62 Copynumber: 14.6 Consensus size: 62
1391199 ACCTTTTTGA
* * * * *
1391209 GTGGCACCCTTCAGTCCTCAAAGAGCAAGATGCCTTTTTCCTTTCAAAGCCTACAC-AATTG
1 GTGGCACCCTTTAGTCCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTG
* * * * * *
1391270 GTGGCACCCTTTAGTCCTCAAAAAGCAAGACACATTTTTCCTTTCAAAGCCTACACGAGTTT
1 GTGGCACCCTTTAGTCCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTG
* ** * * * *
1391332 CTGGCACCCTTTAGTCCTTGAAGAGTAGGACACCTTTTTCTTTTCAAAGCCCACACGTGTTG
1 GTGGCACCCTTTAGTCCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTG
* ** *
1391394 GTGGCACCCTTTAGTCCTCAAAGAGCAAGACGTGTTTTTCCTTTTAAAGCCCACACGAGTTG
1 GTGGCACCCTTTAGTCCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTG
* * * *
1391456 GTGGCAGCCTTTAGTTCTCAAAGAGCAGGATGCCTTTTTCCTTTCAAAGCCCGCACGAGTTG
1 GTGGCACCCTTTAGTCCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTG
* * * * * *
1391518 GTGGCACCCTTTAGTCCTCAAAAAGCAGAAAGCCTTTTTCCTTTCAAAGCCCAGA-TAGTTA
1 GTGGCACCCTTTAGTCCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTG
* * * * * * * **
1391579 GCGACAGCCTTTAGTCCTCAAAAAGCAAGACACCTTTTCCCTTTCAAAGCCTGCAC-AGTTG
1 GTGGCACCCTTTAGTCCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTG
* * * * * * * ** * *
1391640 GTGGCACCTTTTAGTCCTCAAAGAGCCGAATGCCTTCTTCTTTTCAGAGCCCGGATGGGTTG
1 GTGGCACCCTTTAGTCCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTG
* * *
1391702 GTGGCACCATTTAGTCCTTAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTC
1 GTGGCACCCTTTAGTCCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTG
* * * * * * * *
1391764 GTGGCACCCTTTAGTCATTAAAAAGCAGGATGCCTTTTTCGTTTCAAAACCTACACGGGTTG
1 GTGGCACCCTTTAGTCCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTG
* * * * * *
1391826 GTGG-TCCATTTTGTCCTCAAAGAGCAGGACACCTTTTTCTTTTCAAAGCCCACATC-TGTTG
1 GTGGCACCCTTTAGTCCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACA-CGAGTTG
* * * * *
1391887 TTGGCACCCTTTAGTCCTCAAAGAGCAAGATGCATTTTTCCTTTCAAAGCCCATA-GAAGTTG
1 GTGGCACCCTTTAGTCCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACG-AGTTG
* * *
1391949 GTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTTTACTTTCAAAGCCCGCACGAGTTG
1 GTGGCACCCTTTAGTCCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTG
* * * *
1392011 GTGGCACCCTTCAATCCTCAAAAAGCAGGATGCCTTTTTCCTTTCAAAGCCCACACGAGTTG
1 GTGGCACCCTTTAGTCCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTG
* *
1392073 GTGGCACCATTTAGTCCTCAAAGAGCAGGATGCCTTTT
1 GTGGCACCCTTTAGTCCTCAAAGAGCAGGACGCCTTTT
1392111 AGAGTGGCAC
Statistics
Matches: 697, Mismatches: 136, Indels: 15
0.82 0.16 0.02
Matches are distributed among these distances:
61 188 0.27
62 508 0.73
63 1 0.00
ACGTcount: A:0.25, C:0.27, G:0.20, T:0.29
Consensus pattern (62 bp):
GTGGCACCCTTTAGTCCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTG
Found at i:1391403 original size:226 final size:227
Alignment explanation
Indices: 1390995--1391420 Score: 586
Period size: 226 Copynumber: 1.9 Consensus size: 227
1390985 GCTCCATTTT
* * ** *
1390995 GTCCTCAAAGAGCAGGACACCTTTTTCTTTTCAAAGCCCACACGTGTTTGTGGCACCCTTTAGTC
1 GTCCTCAAAGAGCAAGACACCTTTTTCCTTTCAAAGCCCACACGAATTGGTGGCACCCTTTAGTC
* ** * * *
1391060 CTCAAAGAGCAAGACGTATTTTTCCTTTTCAAGCCCACACTAGTTGGTGGCACCCTTTAGTTCTC
66 CTCAAAAAGCAAGACACATTTTTCCTTTTCAAGCCCACACGAGTTGCTGGCACCCTTTAGTCCTC
* ** * *
1391125 AAAGAGCATGATGCCTTTTTCCTTTCAATGCCCGCACGAGTTGGTAGCACCCTTTAGTCCTCAAA
131 AAAGAGCAGGACACCTTTTTCCTTTCAAAGCCCACACGAGTTGGTAGCACCCTTTAGTCCTCAAA
1391190 GAGCAGGATACCTTTTTGAGTGGCACCCTTCA
196 GAGCAGGATACCTTTTTGAGTGGCACCCTTCA
** *
1391222 GTCCTCAAAGAGCAAGATGCCTTTTTCCTTTCAAAGCCTACAC-AATTGGTGGCACCCTTTAGTC
1 GTCCTCAAAGAGCAAGACACCTTTTTCCTTTCAAAGCCCACACGAATTGGTGGCACCCTTTAGTC
* *
1391286 CTCAAAAAGCAAGACACATTTTTCC-TTTCAAAGCCTACACGAGTTTCTGGCACCCTTTAGTCCT
66 CTCAAAAAGCAAGACACATTTTTCCTTTTC-AAGCCCACACGAGTTGCTGGCACCCTTTAGTCCT
** * * * *
1391350 TGAAGAGTAGGACACCTTTTTCTTTTCAAAGCCCACACGTGTTGGTGGCACCCTTTAGTCCTCAA
130 CAAAGAGCAGGACACCTTTTTCCTTTCAAAGCCCACACGAGTTGGTAGCACCCTTTAGTCCTCAA
1391415 AGAGCA
195 AGAGCA
1391421 AGACGTGTTT
Statistics
Matches: 171, Mismatches: 27, Indels: 3
0.85 0.13 0.01
Matches are distributed among these distances:
225 4 0.02
226 129 0.75
227 38 0.22
ACGTcount: A:0.24, C:0.28, G:0.18, T:0.30
Consensus pattern (227 bp):
GTCCTCAAAGAGCAAGACACCTTTTTCCTTTCAAAGCCCACACGAATTGGTGGCACCCTTTAGTC
CTCAAAAAGCAAGACACATTTTTCCTTTTCAAGCCCACACGAGTTGCTGGCACCCTTTAGTCCTC
AAAGAGCAGGACACCTTTTTCCTTTCAAAGCCCACACGAGTTGGTAGCACCCTTTAGTCCTCAAA
GAGCAGGATACCTTTTTGAGTGGCACCCTTCA
Found at i:1391868 original size:185 final size:183
Alignment explanation
Indices: 1391209--1392110 Score: 982
Period size: 185 Copynumber: 4.9 Consensus size: 183
1391199 ACCTTTTTGA
* *
1391209 GTGGCACCCTTCAGTCCTCAAAGAGCAAGATGCCTTTTTCCTTTCAAAGCCTACAC-AATTGGTG
1 GTGGCACCCTTTAGTCCTCAAAGAGCAAGATGCCTTTTTCCTTTCAAAGCCTACACGAGTTGGTG
* * ** * * **
1391273 GCACCCTTTAGTCCTCAAAAAGCAAGACACATTTTTCCTTTCAAAGCCTACACGAGTTTCTGGCA
66 G--CCCTTTAGTCCTCAAAGAGCAGGATGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCA
** * * * *
1391338 CCCTTTAGTCCTTGAAGAGTAGGACACCTTTTTCTTTTCAAAGCCCACACGTGTTG
129 CCCTTTAGTCCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACA-GAGTTG
* ** * *
1391394 GTGGCACCCTTTAGTCCTCAAAGAGCAAGACGTGTTTTTCCTTTTAAAGCCCACACGAGTTGGTG
1 GTGGCACCCTTTAGTCCTCAAAGAGCAAGATGCCTTTTTCCTTTCAAAGCCTACACGAGTTGGTG
* *
1391459 GCAGCCTTTAGTTCTCAAAGAGCAGGATGCCTTTTTCCTTTCAAAGCCCGCACGAGTTGGTGGCA
66 GC--CCTTTAGTCCTCAAAGAGCAGGATGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCA
* * * * * *
1391524 CCCTTTAGTCCTCAAAAAGCAGAAAGCCTTTTTCCTTTCAAAGCCCAGATAGTTA
129 CCCTTTAGTCCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACAGAGTTG
* * * * ** * *
1391579 GCGACAGCCTTTAGTCCTCAAAAAGCAAGACACCTTTTCCCTTTCAAAGCCTGCAC-AGTTGGTG
1 GTGGCACCCTTTAGTCCTCAAAGAGCAAGATGCCTTTTTCCTTTCAAAGCCTACACGAGTTGGTG
* * * * * ** * *
1391643 GCACCTTTTAGTCCTCAAAGAGCCGAATGCCTTCTTCTTTTCAGAGCCCGGATGGGTTGGTGGCA
66 GC-CC-TTTAGTCCTCAAAGAGCAGGATGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCA
* * *
1391708 CCATTTAGTCCTTAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTC
129 CCCTTTAGTCCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACA-GAGTTG
* * * * * * *
1391764 GTGGCACCCTTTAGTCATTAAAAAGCAGGATGCCTTTTTCGTTTCAAAACCTACACGGGTTGGTG
1 GTGGCACCCTTTAGTCCTCAAAGAGCAAGATGCCTTTTTCCTTTCAAAGCCTACACGAGTTGGTG
* * ** * * *
1391829 GTCCATTTTGTCCTCAAAGAGCAGGACACCTTTTTCTTTTCAAAGCCCACATC-TGTTGTTGGCA
66 G-CCCTTTAGTCCTCAAAGAGCAGGATGCCTTTTTCCTTTCAAAGCCCACA-CGAGTTGGTGGCA
* * * *
1391893 CCCTTTAGTCCTCAAAGAGCAAGATGCATTTTTCCTTTCAAAGCCCATAGAAGTTG
129 CCCTTTAGTCCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACAG-AGTTG
* * **
1391949 GTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTTTACTTTCAAAGCCCGCACGAGTTGGTG
1 GTGGCACCCTTTAGTCCTCAAAGAGCAAGATGCCTTTTTCCTTTCAAAGCCTACACGAGTTGGTG
* * *
1392014 GCACCCTTCAATCCTCAAAAAGCAGGATGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCA
66 G--CCCTTTAGTCCTCAAAGAGCAGGATGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCA
* *
1392079 CCATTTAGTCCTCAAAGAGCAGGATGCCTTTT
129 CCCTTTAGTCCTCAAAGAGCAGGACGCCTTTT
1392111 AGAGTGGCAC
Statistics
Matches: 592, Mismatches: 114, Indels: 21
0.81 0.16 0.03
Matches are distributed among these distances:
183 2 0.00
184 105 0.18
185 297 0.50
186 187 0.32
187 1 0.00
ACGTcount: A:0.25, C:0.27, G:0.20, T:0.29
Consensus pattern (183 bp):
GTGGCACCCTTTAGTCCTCAAAGAGCAAGATGCCTTTTTCCTTTCAAAGCCTACACGAGTTGGTG
GCCCTTTAGTCCTCAAAGAGCAGGATGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACC
CTTTAGTCCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACAGAGTTG
Found at i:1392130 original size:41 final size:41
Alignment explanation
Indices: 1392073--1392151 Score: 131
Period size: 41 Copynumber: 1.9 Consensus size: 41
1392063 ACACGAGTTG
*
1392073 GTGGCACCATTTAGTCCTCAAAGAGCAGGATGCCTTTTAGA
1 GTGGCACCATTTAGTCCTCAAAGAGCAAGATGCCTTTTAGA
* *
1392114 GTGGCACCCTTTAGTCCTCAAAGAGGAAGATGCCTTTT
1 GTGGCACCATTTAGTCCTCAAAGAGCAAGATGCCTTTT
1392152 TCCTTTCAAA
Statistics
Matches: 35, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
41 35 1.00
ACGTcount: A:0.25, C:0.23, G:0.24, T:0.28
Consensus pattern (41 bp):
GTGGCACCATTTAGTCCTCAAAGAGCAAGATGCCTTTTAGA
Found at i:1392225 original size:164 final size:165
Alignment explanation
Indices: 1391949--1392266 Score: 494
Period size: 164 Copynumber: 1.9 Consensus size: 165
1391939 ATAGAAGTTG
* *
1391949 GTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTTTACTTTCAAAGCCCGCACGAGTTGGTG
1 GTGGCACCCTTTAGTCCTCAAAGAGCAAGATGCCTTTTTACTTTCAAAGCCCACACGAGTTGGTG
* ** *
1392014 GCACCCTTCAATCCTCAAAAAGCAGGATGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCA
66 GCACCCTTCAATCCTCAAAAAGCAAGACACCTTTTTCCTTTCAAAGCCCACACAAGTTGGTGGCA
1392079 CCATTTAGTCCTCAAAGAGCAGGATGCCTTTTAGA
131 CCATTTAGTCCTCAAAGAGCAGGATGCCTTTTAGA
* *
1392114 GTGGCACCCTTTAGTCCTCAAAGAGGAAGATGCCTTTTTCCTTTCAAAGCCCACAC-AGTTGGTG
1 GTGGCACCCTTTAGTCCTCAAAGAGCAAGATGCCTTTTTACTTTCAAAGCCCACACGAGTTGGTG
* * * * *
1392178 GCACCCTTTAGTCCTCAAAAAGCAAGACACCTTTTTCCTTTCAAAGCCTACACAAGTTGTTGTCA
66 GCACCCTTCAATCCTCAAAAAGCAAGACACCTTTTTCCTTTCAAAGCCCACACAAGTTGGTGGCA
* *
1392243 CCCTTTAGTCCTCAAAGAGTAGGA
131 CCATTTAGTCCTCAAAGAGCAGGA
1392267 CACCTTTTTC
Statistics
Matches: 138, Mismatches: 15, Indels: 1
0.90 0.10 0.01
Matches are distributed among these distances:
164 86 0.62
165 52 0.38
ACGTcount: A:0.26, C:0.27, G:0.19, T:0.27
Consensus pattern (165 bp):
GTGGCACCCTTTAGTCCTCAAAGAGCAAGATGCCTTTTTACTTTCAAAGCCCACACGAGTTGGTG
GCACCCTTCAATCCTCAAAAAGCAAGACACCTTTTTCCTTTCAAAGCCCACACAAGTTGGTGGCA
CCATTTAGTCCTCAAAGAGCAGGATGCCTTTTAGA
Found at i:1392269 original size:62 final size:62
Alignment explanation
Indices: 1392114--1392500 Score: 560
Period size: 62 Copynumber: 6.3 Consensus size: 62
1392104 GCCTTTTAGA
* *
1392114 GTGGCACCCTTTAGTCCTCAAAGAGGAAGATGCCTTTTTCCTTTCAAAGCCCACAC-AGTTG
1 GTGGCACCCTTTAGTCCTCAAAGAGCAAGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTG
* * * *
1392175 GTGGCACCCTTTAGTCCTCAAAAAGCAAGACACCTTTTTCCTTTCAAAGCCTACACAAGTTG
1 GTGGCACCCTTTAGTCCTCAAAGAGCAAGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTG
* * * * * *
1392237 TTGTCACCCTTTAGTCCTCAAAGAGTAGGACACCTTTTTCCTTTTAAAGCCCACACGAGTTG
1 GTGGCACCCTTTAGTCCTCAAAGAGCAAGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTG
* * * *
1392299 GTGGCACCCTTTAGTCCTCAAAGAGCAGGACGCCTTTTTCTTTTCAAAGCCCATACAAGTTG
1 GTGGCACCCTTTAGTCCTCAAAGAGCAAGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTG
* * *
1392361 GTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTTTCCTTTCAAAGCCCACACGAGTTT
1 GTGGCACCCTTTAGTCCTCAAAGAGCAAGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTG
* * *
1392423 GTGGCACCCTTTAGTCCTCAAAGAGCAAGATGCATTTTTCCTTTCAATGCCCACACGAGTTG
1 GTGGCACCCTTTAGTCCTCAAAGAGCAAGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTG
*
1392485 GTGGCACCCTTCAGTC
1 GTGGCACCCTTTAGTC
1392501 TCCTTTCAAA
Statistics
Matches: 294, Mismatches: 31, Indels: 1
0.90 0.10 0.00
Matches are distributed among these distances:
61 51 0.17
62 243 0.83
ACGTcount: A:0.24, C:0.28, G:0.18, T:0.29
Consensus pattern (62 bp):
GTGGCACCCTTTAGTCCTCAAAGAGCAAGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTG
Found at i:1392288 original size:226 final size:227
Alignment explanation
Indices: 1391888--1392336 Score: 684
Period size: 226 Copynumber: 2.0 Consensus size: 227
1391878 CATCTGTTGT
*
1391888 TGGCACCCTTTAGTCCTCAAAGAGCAAGATGCATTTTTCCTTTCAAAGCCCATAGAAGTTGGTGG
1 TGGCACCCTTTAGTCCTCAAAGAGCAAGATGCATTTTTCCTTTCAAAGCCCACAGAAGTTGGTGG
* * ** * *
1391953 CACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTTTACTTTCAAAGCCCGCACGAGTTGGTGGCAC
66 CACCCTTTAGTCCTCAAAAAGCAAGACACCTTTTTACTTTCAAAGCCCACACAAGTTGGTGGCAC
**
1392018 CCTTCAATCCTCAAAAAGCAGGATGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCAT
131 CCTTCAATCCTCAAAAAGCAGGACACCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCAT
*
1392083 TTAGTCCTCAAAGAGCAGGATGCCTTTTAGAG
196 TTAGTCCTCAAAGAGCAGGACGCCTTTTAGAG
* * *
1392115 TGGCACCCTTTAGTCCTCAAAGAGGAAGATGCCTTTTTCCTTTCAAAGCCCACA-CAGTTGGTGG
1 TGGCACCCTTTAGTCCTCAAAGAGCAAGATGCATTTTTCCTTTCAAAGCCCACAGAAGTTGGTGG
* * * *
1392179 CACCCTTTAGTCCTCAAAAAGCAAGACACCTTTTTCCTTTCAAAGCCTACACAAGTTGTTGTCAC
66 CACCCTTTAGTCCTCAAAAAGCAAGACACCTTTTTACTTTCAAAGCCCACACAAGTTGGTGGCAC
* * * * * *
1392244 CCTTTAGTCCTCAAAGAGTAGGACACCTTTTTCCTTTTAAAGCCCACACGAGTTGGTGGCACCCT
131 CCTTCAATCCTCAAAAAGCAGGACACCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCAT
1392309 TTAGTCCTCAAAGAGCAGGACGCCTTTT
196 TTAGTCCTCAAAGAGCAGGACGCCTTTT
1392337 TCTTTTCAAA
Statistics
Matches: 199, Mismatches: 23, Indels: 1
0.89 0.10 0.00
Matches are distributed among these distances:
226 148 0.74
227 51 0.26
ACGTcount: A:0.25, C:0.27, G:0.19, T:0.28
Consensus pattern (227 bp):
TGGCACCCTTTAGTCCTCAAAGAGCAAGATGCATTTTTCCTTTCAAAGCCCACAGAAGTTGGTGG
CACCCTTTAGTCCTCAAAAAGCAAGACACCTTTTTACTTTCAAAGCCCACACAAGTTGGTGGCAC
CCTTCAATCCTCAAAAAGCAGGACACCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCAT
TTAGTCCTCAAAGAGCAGGACGCCTTTTAGAG
Found at i:1392516 original size:40 final size:40
Alignment explanation
Indices: 1392461--1392540 Score: 133
Period size: 40 Copynumber: 2.0 Consensus size: 40
1392451 GATGCATTTT
* *
1392461 TCCTTTCAATGCCCACACGAGTTGGTGGCACCCTTCAGTC
1 TCCTTTCAAAGCCCACACAAGTTGGTGGCACCCTTCAGTC
*
1392501 TCCTTTCAAAGCCCACACAAGTTGGTGGCACCCTTTAGTC
1 TCCTTTCAAAGCCCACACAAGTTGGTGGCACCCTTCAGTC
1392541 CTCAAAGAGC
Statistics
Matches: 37, Mismatches: 3, Indels: 0
0.93 0.08 0.00
Matches are distributed among these distances:
40 37 1.00
ACGTcount: A:0.20, C:0.34, G:0.19, T:0.28
Consensus pattern (40 bp):
TCCTTTCAAAGCCCACACAAGTTGGTGGCACCCTTCAGTC
Found at i:1392577 original size:102 final size:102
Alignment explanation
Indices: 1392399--1392589 Score: 312
Period size: 102 Copynumber: 1.9 Consensus size: 102
1392389 GATGCCTTTT
* *
1392399 TCCTTTCAAAGCCCACACGAGTTTGTGGCACCCTTTAGTCCTCAAAGAGCAAGATGCATTTTTCC
1 TCCTTTCAAAGCCCACACAAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAAGATGCATTTTTCC
1392464 TTTCAATGCCCACACGAGTTGGTGGCACCCTTCAGTC
66 TTTCAATGCCCACACGAGTTGGTGGCACCCTTCAGTC
* *
1392501 TCCTTTCAAAGCCCACACAAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTTTCC
1 TCCTTTCAAAGCCCACACAAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAAGATGCATTTTTCC
* *
1392566 TTTCGAA-GCCCATATGAGTTGGTG
66 TTTC-AATGCCCACACGAGTTGGTG
1392590 ACACTTTTTA
Statistics
Matches: 82, Mismatches: 6, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
102 80 0.98
103 2 0.02
ACGTcount: A:0.23, C:0.29, G:0.20, T:0.29
Consensus pattern (102 bp):
TCCTTTCAAAGCCCACACAAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAAGATGCATTTTTCC
TTTCAATGCCCACACGAGTTGGTGGCACCCTTCAGTC
Found at i:1392600 original size:62 final size:61
Alignment explanation
Indices: 1392501--1392910 Score: 405
Period size: 62 Copynumber: 6.6 Consensus size: 61
1392491 CCCTTCAGTC
*
1392501 TCCTTTCAAAGCCCACACAAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTT
1 TCCTTTC-AAGCCCACACGAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTT
* * * ** *
1392563 TCCTTTCGAAGCCCATATGAGTTGGTGACACTTTTTAGTCCTCAAAAAGCAGGATGCCTTTT
1 TCCTTTC-AAGCCCACACGAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTT
* * * * ** * * *
1392625 TCGTTTCAAACCTACACGGGTTGGTGGCGTCATTTTGTCCTCAAAGAGTAGGA--CTCTTTT
1 TCCTTTCAAGCCCACACGAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGC-CTTTT
** * * * * * *
1392685 TTTTTTCAAGGCCTACACTTA-TTGGCGGCACCCTTTAGTCTTCAATGAGCAGGA-CCGCTTTT
1 TCCTTTCAA-GCCCACAC-GAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGC-CTTTT
* * * * * *
1392747 TCTTTTCAAAGCCTACATGAGTTTGTGGCACCCTTTAGTTCTGAAAGAGCAGGATGCCTTTT
1 TCCTTTC-AAGCCCACACGAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTT
* * *
1392809 TCCTTTCAAAGCCCACACGAGTTTGTGGCACCCTTTAGTCCTCAAAGAGCAAGATGCATTTT
1 TCCTTTC-AAGCCCACACGAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTT
*
1392871 TCCTTTCAATGCCCACACGAGTTGGTGGCACCCTTCAGTC
1 TCCTTTCAA-GCCCACACGAGTTGGTGGCACCCTTTAGTC
1392911 TCCTTTGAAA
Statistics
Matches: 285, Mismatches: 55, Indels: 16
0.80 0.15 0.04
Matches are distributed among these distances:
59 1 0.00
60 12 0.04
61 68 0.24
62 201 0.71
63 3 0.01
ACGTcount: A:0.22, C:0.26, G:0.20, T:0.32
Consensus pattern (61 bp):
TCCTTTCAAGCCCACACGAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTT
Found at i:1393723 original size:19 final size:20
Alignment explanation
Indices: 1393679--1393730 Score: 81
Period size: 20 Copynumber: 2.6 Consensus size: 20
1393669 TTACAAGCCA
1393679 ATGTATCGATACATTTGGTC
1 ATGTATCGATACATTTGGTC
1393699 ATGTATCGATACATCTT-GT-
1 ATGTATCGATACAT-TTGGTC
1393718 ATGTATCGATACA
1 ATGTATCGATACA
1393731 AACAGTTAAA
Statistics
Matches: 31, Mismatches: 0, Indels: 3
0.91 0.00 0.09
Matches are distributed among these distances:
19 13 0.42
20 16 0.52
21 2 0.06
ACGTcount: A:0.29, C:0.15, G:0.17, T:0.38
Consensus pattern (20 bp):
ATGTATCGATACATTTGGTC
Found at i:1393819 original size:20 final size:21
Alignment explanation
Indices: 1393772--1393824 Score: 65
Period size: 20 Copynumber: 2.6 Consensus size: 21
1393762 GCCAATCACC
*
1393772 TGTATCGATACATTCTTTGCA
1 TGTATCGATACATTCTGTGCA
*
1393793 AGTATCGATACATT-TG-GTCA
1 TGTATCGATACATTCTGTG-CA
1393813 TGTATCGATACA
1 TGTATCGATACA
1393825 ATGTATCGAT
Statistics
Matches: 28, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
19 1 0.04
20 14 0.50
21 13 0.46
ACGTcount: A:0.28, C:0.17, G:0.17, T:0.38
Consensus pattern (21 bp):
TGTATCGATACATTCTGTGCA
Found at i:1393830 original size:13 final size:13
Alignment explanation
Indices: 1393812--1393836 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
1393802 ACATTTGGTC
1393812 ATGTATCGATACA
1 ATGTATCGATACA
1393825 ATGTATCGATAC
1 ATGTATCGATAC
1393837 TGTGCATTAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:1393869 original size:20 final size:19
Alignment explanation
Indices: 1393846--1393884 Score: 60
Period size: 20 Copynumber: 2.0 Consensus size: 19
1393836 CTGTGCATTA
*
1393846 TGTATCGATATATTTGAAGG
1 TGTATCGATACATTT-AAGG
1393866 TGTATCGATACATTTAAGG
1 TGTATCGATACATTTAAGG
1393885 GTTTTAACCT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
19 4 0.22
20 14 0.78
ACGTcount: A:0.31, C:0.08, G:0.23, T:0.38
Consensus pattern (19 bp):
TGTATCGATACATTTAAGG
Found at i:1396139 original size:20 final size:21
Alignment explanation
Indices: 1396110--1396150 Score: 59
Period size: 22 Copynumber: 2.0 Consensus size: 21
1396100 TGTTTTTGTT
1396110 GATGATTTTG-A-TGAAAAAC
1 GATGATTTTGAAGTGAAAAAC
1396129 GATGTATTTTGAAGTGAAAAAC
1 GATG-ATTTTGAAGTGAAAAAC
1396151 AAGAAATTTG
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
19 4 0.21
20 6 0.32
21 1 0.05
22 8 0.42
ACGTcount: A:0.41, C:0.05, G:0.22, T:0.32
Consensus pattern (21 bp):
GATGATTTTGAAGTGAAAAAC
Found at i:1396510 original size:8 final size:8
Alignment explanation
Indices: 1396492--1396522 Score: 53
Period size: 8 Copynumber: 3.8 Consensus size: 8
1396482 TTTTCAACAT
1396492 CAAACATCA
1 CAAA-ATCA
1396501 CAAAATCA
1 CAAAATCA
1396509 CAAAATCA
1 CAAAATCA
1396517 CAAAAT
1 CAAAAT
1396523 TTAATCAAAT
Statistics
Matches: 22, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
8 18 0.82
9 4 0.18
ACGTcount: A:0.61, C:0.26, G:0.00, T:0.13
Consensus pattern (8 bp):
CAAAATCA
Found at i:1401185 original size:62 final size:62
Alignment explanation
Indices: 1401096--1401435 Score: 461
Period size: 62 Copynumber: 5.5 Consensus size: 62
1401086 CAACGCTTTT
* * *
1401096 AGCCCACAC-AGTTGGTGGCACCATTTAGTCCTCAAAGAGCAAGACACCTTTTTCCTTTCAA
1 AGCCCACACGAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGACGCCTTTTTCCTTTCAA
** * * * *
1401157 AGCCTGCACGAGTTGCTGGCACCCTTTAGTCTTCGAAGAGTAGGACAG-CTTTTTCCTTTCAA
1 AGCCCACACGAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGAC-GCCTTTTTCCTTTCAA
*
1401219 AGCCCACACGAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGACGCCTTTTTCTTTTCAA
1 AGCCCACACGAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGACGCCTTTTTCCTTTCAA
* * **
1401281 ATCCCGCATAAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGACGCCTTTTTCCTTTCAA
1 AGCCCACACGAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGACGCCTTTTTCCTTTCAA
* * * *
1401343 AGCCCACACGAGTTTGTGGCACCCTTTAGTCCTCAAAAAGCAAGATGCCTTTTTCCTTTCAA
1 AGCCCACACGAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGACGCCTTTTTCCTTTCAA
* *
1401405 CGCCCACACGACTTGGTGGCA-CCTTTCAGTC
1 AGCCCACACGAGTTGGTGGCACCCTTT-AGTC
1401436 TCCTTTCAAA
Statistics
Matches: 243, Mismatches: 32, Indels: 7
0.86 0.11 0.02
Matches are distributed among these distances:
61 13 0.05
62 230 0.95
ACGTcount: A:0.23, C:0.29, G:0.19, T:0.28
Consensus pattern (62 bp):
AGCCCACACGAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGACGCCTTTTTCCTTTCAA
Found at i:1401441 original size:40 final size:40
Alignment explanation
Indices: 1401396--1401475 Score: 117
Period size: 40 Copynumber: 2.0 Consensus size: 40
1401386 GATGCCTTTT
* *
1401396 TCCTTTCAACGCCCACACGACTTGGTGGC-ACCTTTCAGTC
1 TCCTTTCAAAGCCCACACAACTTGGTGGCAACCTTT-AGTC
*
1401436 TCCTTTCAAAGCCCACACAAGTTGGTGGCAACCTTTAGTC
1 TCCTTTCAAAGCCCACACAACTTGGTGGCAACCTTTAGTC
1401476 CTCAAAGAGC
Statistics
Matches: 36, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
40 30 0.83
41 6 0.17
ACGTcount: A:0.21, C:0.34, G:0.17, T:0.28
Consensus pattern (40 bp):
TCCTTTCAAAGCCCACACAACTTGGTGGCAACCTTTAGTC
Found at i:1401472 original size:102 final size:102
Alignment explanation
Indices: 1401334--1401537 Score: 309
Period size: 102 Copynumber: 2.0 Consensus size: 102
1401324 GACGCCTTTT
* * *
1401334 TCCTTTCAAAGCCCACACGAGTTTGTGGCACCCTTTAGTCCTCAAAAAGCAAGATGCCTTTTTCC
1 TCCTTTCAAAGCCCACACAAGTTGGTGGCAACCTTTAGTCCTCAAAAAGCAAGATGCCTTTTTCC
*** *
1401399 TTTCAACGCCCACACGACTTGGTGGCACCTTTCAGTC
66 TTTCAAAAACCACACGACTTGGTGACACCTTTCAGTC
* *
1401436 TCCTTTCAAAGCCCACACAAGTTGGTGGCAACCTTTAGTCCTCAAAGAGCAGGATGCCTTTTTCC
1 TCCTTTCAAAGCCCACACAAGTTGGTGGCAACCTTTAGTCCTCAAAAAGCAAGATGCCTTTTTCC
* *
1401501 TTTCAAAAACCACACGAGTTGGTGACACCTTTTAGTC
66 TTTCAAAAACCACACGACTTGGTGACACCTTTCAGTC
1401538 CTCAAAAAGC
Statistics
Matches: 91, Mismatches: 11, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
102 91 1.00
ACGTcount: A:0.25, C:0.30, G:0.17, T:0.28
Consensus pattern (102 bp):
TCCTTTCAAAGCCCACACAAGTTGGTGGCAACCTTTAGTCCTCAAAAAGCAAGATGCCTTTTTCC
TTTCAAAAACCACACGACTTGGTGACACCTTTCAGTC
Found at i:1401507 original size:62 final size:60
Alignment explanation
Indices: 1401436--1401622 Score: 207
Period size: 62 Copynumber: 3.0 Consensus size: 60
1401426 CCTTTCAGTC
*
1401436 TCCTTTCAAAGCCCACACAAGTTGGTGGCAACCTTTAGTCCTCAAAGAGCAGGATGCCTTTT
1 TCCTTTCAAA-CCCACACGAGTTGGTGGC-ACCTTTAGTCCTCAAAGAGCAGGATGCCTTTT
* * * *
1401498 TCCTTTCAAAAACCACACGAGTTGGTGACACCTTTTAGTCCTCAAAAAGCAGGGTGCCTTTT
1 TCCTTTC-AAACCCACACGAGTTGGTGGCACC-TTTAGTCCTCAAAGAGCAGGATGCCTTTT
* * * * *
1401560 TCGTTTCAAACCTACACGGGTTGGTGGC-CTCATTTTGTCCTCAAAGAGTAGGACT-CCTTTT
1 TCCTTTCAAACCCACACGAGTTGGTGGCAC-C-TTTAGTCCTCAAAGAGCAGGA-TGCCTTTT
1401621 TC
1 TC
1401623 TTTAGTCCTC
Statistics
Matches: 106, Mismatches: 15, Indels: 9
0.82 0.12 0.07
Matches are distributed among these distances:
60 1 0.01
61 46 0.43
62 56 0.53
63 3 0.03
ACGTcount: A:0.24, C:0.26, G:0.19, T:0.30
Consensus pattern (60 bp):
TCCTTTCAAACCCACACGAGTTGGTGGCACCTTTAGTCCTCAAAGAGCAGGATGCCTTTT
Found at i:1401698 original size:61 final size:62
Alignment explanation
Indices: 1401623--1401809 Score: 232
Period size: 62 Copynumber: 3.0 Consensus size: 62
1401613 CTCCTTTTTC
* * * *
1401623 TTTAGTCCTCAAAGAGCACGACCCCTTTTT-TTTTCAAAGCCTACACGGGTTTGTGGCACCT
1 TTTAGTCCTCAAAGAGCAAGACCCCTTTTTCCTTTCAAAGCCCACACGAGTTTGTGGCACCT
* * * * * *
1401684 TTTAGTTCTGAAAGAGTATGACCCATTTTTCCTTTCAAAGCCCACACGAGTTTGTGGCACCC
1 TTTAGTCCTCAAAGAGCAAGACCCCTTTTTCCTTTCAAAGCCCACACGAGTTTGTGGCACCT
** * * *
1401746 TTTAGTCCTCAAAGAGCAAGATGCCTTTTTCCTTTCAACGCCCACACGACTTGGTGGCACCT
1 TTTAGTCCTCAAAGAGCAAGACCCCTTTTTCCTTTCAAAGCCCACACGAGTTTGTGGCACCT
1401808 TT
1 TT
1401810 CCGTCTCCTT
Statistics
Matches: 105, Mismatches: 20, Indels: 1
0.83 0.16 0.01
Matches are distributed among these distances:
61 25 0.24
62 80 0.76
ACGTcount: A:0.22, C:0.28, G:0.18, T:0.32
Consensus pattern (62 bp):
TTTAGTCCTCAAAGAGCAAGACCCCTTTTTCCTTTCAAAGCCCACACGAGTTTGTGGCACCT
Found at i:1401698 original size:92 final size:92
Alignment explanation
Indices: 1401531--1401714 Score: 214
Period size: 92 Copynumber: 2.0 Consensus size: 92
1401521 GGTGACACCT
* ***
1401531 TTTAGTCCTCAAAAAGCAGGGTGCCTTTTTCGTTTCAAACCTACACGGGTTGGTGGCCTCATTTT
1 TTTAGTCCTCAAAAAGCACGACCCCTTTTTCGTTTCAAACCTACACGGGTTGGTGGCCTCATTTT
1401596 GTCCTCAAAGAGTAGGACTCC-TTTTTC
66 GTCCTCAAAGAGTAGGAC-CCATTTTTC
* * *
1401623 TTTAGTCCTCAAAGAGCACGACCCCTTTTT-TTTTCAAAGCCTACACGGGTTTGTGGCAC-C-TT
1 TTTAGTCCTCAAAAAGCACGACCCCTTTTTCGTTTCAAA-CCTACACGGGTTGGTGGC-CTCATT
* * *
1401685 TTAGTTCTGAAAGAGTATGACCCATTTTTC
64 TT-GTCCTCAAAGAGTAGGACCCATTTTTC
1401715 CTTTCAAAGC
Statistics
Matches: 78, Mismatches: 10, Indels: 8
0.81 0.10 0.08
Matches are distributed among these distances:
91 13 0.17
92 64 0.82
93 1 0.01
ACGTcount: A:0.22, C:0.24, G:0.19, T:0.35
Consensus pattern (92 bp):
TTTAGTCCTCAAAAAGCACGACCCCTTTTTCGTTTCAAACCTACACGGGTTGGTGGCCTCATTTT
GTCCTCAAAGAGTAGGACCCATTTTTC
Found at i:1401754 original size:154 final size:154
Alignment explanation
Indices: 1401468--1401761 Score: 335
Period size: 154 Copynumber: 1.9 Consensus size: 154
1401458 TGGTGGCAAC
* **
1401468 CTTTAGTCCTCAAAGAGCAGGATGCCTTTTTCCTTTCAAAAACCACACGAGTTGGTGACACCTTT
1 CTTTAGTCCTCAAAGAGCACGACCCCTTTTTCCTTTCAAAAACCACACGAGTTGGTGACACCTTT
** * * * *
1401533 TAGTCCTCAAAAAGCAGGGTGCCTTTTTCGTTTCAAACCTACACGGGTTGGTGGCCTCATTTTGT
66 TAGTCCTCAAAAAGCAGGGACCCTTTTTCCTTTCAAACCCACACGAGTTGGTGGCCTCATTTAGT
1401598 CCTCAAAGAGTAGGACTCCTTTTT
131 CCTCAAAGAGTAGGACTCCTTTTT
* * * * *
1401622 CTTTAGTCCTCAAAGAGCACGACCCCTTTTT-TTTTC-AAAGCCTACACGGGTTTGTGGCACCTT
1 CTTTAGTCCTCAAAGAGCACGACCCCTTTTTCCTTTCAAAAACC-ACACGAGTTGGTGACACCTT
* * * * * * *
1401685 TTAGTTCTGAAAGAGTA-TGACCCATTTTTCCTTTCAAAGCCCACACGAGTTTGTGGCAC-CCTT
65 TTAGTCCTCAAAAAGCAGGGACCC-TTTTTCCTTTCAAA-CCCACACGAGTTGGTGGC-CTCATT
1401748 TAGTCCTCAAAGAG
127 TAGTCCTCAAAGAG
1401762 CAAGATGCCT
Statistics
Matches: 115, Mismatches: 21, Indels: 8
0.80 0.15 0.06
Matches are distributed among these distances:
152 8 0.07
153 47 0.41
154 59 0.51
155 1 0.01
ACGTcount: A:0.23, C:0.26, G:0.19, T:0.32
Consensus pattern (154 bp):
CTTTAGTCCTCAAAGAGCACGACCCCTTTTTCCTTTCAAAAACCACACGAGTTGGTGACACCTTT
TAGTCCTCAAAAAGCAGGGACCCTTTTTCCTTTCAAACCCACACGAGTTGGTGGCCTCATTTAGT
CCTCAAAGAGTAGGACTCCTTTTT
Found at i:1401773 original size:154 final size:154
Alignment explanation
Indices: 1401304--1401776 Score: 334
Period size: 164 Copynumber: 3.0 Consensus size: 154
1401294 TGGTGGCACC
* * ** * * *
1401304 CTTTAGTCCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTTGTGGCACCCTT
1 CTTTAGTCCTCAAAGAGCACGACCCCTTTTTCCTTTCAAAAACCACACGAGTTGGTGACACCTTT
* * * *
1401369 TAGTCCTCAAAAAGCA-AGATGCCTTTTTCCTTTCAACGCCCACACGACTTGGTGGCAC-C-TTT
66 TAGTCCTCAAAAAGCAGGGA-CCCTTTTTCCTTTCAA-ACCCACACGAGTTGGTGGC-CTCATTT
* * ** ****
1401431 CAGTCTCCTTTCAAAGCCCACACAAG-TTGGTGGCAAC
128 -AG--TCC--TCAAAG---A-GCAAGACTCCT--TTTT
* **
1401468 CTTTAGTCCTCAAAGAGCAGGATGCCTTTTTCCTTTCAAAAACCACACGAGTTGGTGACACCTTT
1 CTTTAGTCCTCAAAGAGCACGACCCCTTTTTCCTTTCAAAAACCACACGAGTTGGTGACACCTTT
** * * * *
1401533 TAGTCCTCAAAAAGCAGGGTGCCTTTTTCGTTTCAAACCTACACGGGTTGGTGGCCTCATTTTGT
66 TAGTCCTCAAAAAGCAGGGACCCTTTTTCCTTTCAAACCCACACGAGTTGGTGGCCTCATTTAGT
* *
1401598 CCTCAAAGAGTAGGACTCCTTTTT
131 CCTCAAAGAGCAAGACTCCTTTTT
* * * * *
1401622 CTTTAGTCCTCAAAGAGCACGACCCCTTTTT-TTTTC-AAAGCCTACACGGGTTTGTGGCACCTT
1 CTTTAGTCCTCAAAGAGCACGACCCCTTTTTCCTTTCAAAAACC-ACACGAGTTGGTGACACCTT
* * * * * * *
1401685 TTAGTTCTGAAAGAGTA-TGACCCATTTTTCCTTTCAAAGCCCACACGAGTTTGTGGCAC-CCTT
65 TTAGTCCTCAAAAAGCAGGGACCC-TTTTTCCTTTCAAA-CCCACACGAGTTGGTGGC-CTCATT
1401748 TAGTCCTCAAAGAGCAAGA-TGCCTTTTT
127 TAGTCCTCAAAGAGCAAGACT-CCTTTTT
1401776 C
1 C
1401777 CTTTCAACGC
Statistics
Matches: 253, Mismatches: 47, Indels: 28
0.77 0.14 0.09
Matches are distributed among these distances:
152 8 0.03
153 48 0.19
154 70 0.28
155 3 0.01
156 3 0.01
159 6 0.02
161 3 0.01
162 1 0.00
163 17 0.07
164 93 0.37
165 1 0.00
ACGTcount: A:0.23, C:0.27, G:0.18, T:0.31
Consensus pattern (154 bp):
CTTTAGTCCTCAAAGAGCACGACCCCTTTTTCCTTTCAAAAACCACACGAGTTGGTGACACCTTT
TAGTCCTCAAAAAGCAGGGACCCTTTTTCCTTTCAAACCCACACGAGTTGGTGGCCTCATTTAGT
CCTCAAAGAGCAAGACTCCTTTTT
Found at i:1401832 original size:102 final size:102
Alignment explanation
Indices: 1401713--1401911 Score: 326
Period size: 102 Copynumber: 2.0 Consensus size: 102
1401703 GACCCATTTT
* * *
1401713 TCCTTTCAAAGCCCACACGAGTTTGTGGCACCCTTTAGTCCTCAAAGAGCAAGATGCCTTTTTCC
1 TCCTTTCAAAGCCCACACAAGTTGGTGGCAACCTTTAGTCCTCAAAGAGCAAGATGCCTTTTTCC
* * *
1401778 TTTCAACGCCCACACGACTTGGTGGCACCTTTCCGTC
66 CTTCAAAGCCCACACGACTTGGTGACACCTTTCCGTC
*
1401815 TCCTTTCAAAGCCCACACAAGTTGGTGGCAACCTTTAGTCCTCAAAGAGCAGGATGCCTTTTTCC
1 TCCTTTCAAAGCCCACACAAGTTGGTGGCAACCTTTAGTCCTCAAAGAGCAAGATGCCTTTTTCC
*
1401880 CTTCAAAGCCCACACGAGTTGGTGACACCTTT
66 CTTCAAAGCCCACACGACTTGGTGACACCTTT
1401912 TAGTCCTCAA
Statistics
Matches: 89, Mismatches: 8, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
102 89 1.00
ACGTcount: A:0.23, C:0.32, G:0.18, T:0.28
Consensus pattern (102 bp):
TCCTTTCAAAGCCCACACAAGTTGGTGGCAACCTTTAGTCCTCAAAGAGCAAGATGCCTTTTTCC
CTTCAAAGCCCACACGACTTGGTGACACCTTTCCGTC
Found at i:1401916 original size:62 final size:62
Alignment explanation
Indices: 1401815--1405535 Score: 2364
Period size: 62 Copynumber: 60.0 Consensus size: 62
1401805 CCTTTCCGTC
* * *
1401815 TCCTTTCAAAGCCCACACAAGTTGGTGGCAACCTTTAGTCCTCAAAGAGCAGGATGCCTTTT
1 TCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGACGCCTTTT
* * * * * *
1401877 TCCCTTCAAAGCCCACACGAGTTGGTGACACCTTTTAGTCCTCAAAAAGCGGGATGCCTTTT
1 TCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGACGCCTTTT
* * * * * * *
1401939 TCATTTCAAA-CCTACACGGGTTGGTGGC-CTCATTTTGTCCTCAAAGAGTAGGACTCCTTTT
1 TCCTTTCAAAGCCCACACGAGTTGGTGGCAC-CCTTTAGTCCTCAAAGAGCAGGACGCCTTTT
* ** *
1402000 TCTTTTCAAAGCCCACACTTGTTGGTGGCACCCTTTAGTCCTCAATGAGCAGGACGCCTTTT
1 TCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGACGCCTTTT
* * * * *
1402062 TCCTTTCGAAGCCCACACGAGTCT-GTGGCACCTTTTAGTCCTTAAAGAGCAAGATGCCTTTT
1 TCCTTTCAAAGCCCACACGAGT-TGGTGGCACCCTTTAGTCCTCAAAGAGCAGGACGCCTTTT
* * * * * * *
1402124 T--TTTCAAAGCCCACCCGGGTCGGTGGCTCCCTTTAGCCCTCAAAAAGCAGGACACCTTTT
1 TCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGACGCCTTTT
* * * * * * * *
1402184 TCGTTTCAAAGCCGACATGAGTCGATAGCACCCTTTAGTCCTCAAAGAGTAGGACACCTTTT
1 TCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGACGCCTTTT
* ** * * *
1402246 TCCTTTCATAA-CCCACACAAGTTGGTGGCACATTTTAGTCCTCGAAGAGCAAGATGCCTTTT
1 TCCTTTCA-AAGCCCACACGAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGACGCCTTTT
* * *
1402308 TCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGTCCT-AGAAGGGGAGGACACCTTTT
1 TCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGTCCTCA-AAGAGCAGGACGCCTTTT
* * ** * * * * * *
1402370 TCCTTTCAAAGCCCGA-ACGAGTAGATGGCATTCTTTTGTCTTGAAAGAGCAAGACACTTTTT
1 TCCTTTCAAAGCCC-ACACGAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGACGCCTTTT
* *
1402432 TCTTTTCAAAGCCCA-ATCGAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGACGCTTTTT
1 TCCTTTCAAAGCCCACA-CGAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGACGCCTTTT
* * * * *
1402494 TCCTTTTAAAGCCCACACGAGTTGGTGGCATCCTTTAGTCCGCAAAGAGTAGGATGCCTTTT
1 TCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGACGCCTTTT
* * * * ** * * *
1402556 TCCTATCAAAACCCATACGTGTTGGTGGC-CTTATTTTGTCCTCAAAGAGTAGGACACCTTTT
1 TCCTTTCAAAGCCCACACGAGTTGGTGGCAC-CCTTTAGTCCTCAAAGAGCAGGACGCCTTTT
* * * *
1402618 TCTTTTCAAAGCCAACACGTGTTGGTGGCACCCTTTAGTCCTCAATGAGCAGGACGCCTTTT
1 TCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGACGCCTTTT
* * * * * *
1402680 TCCTTTCAAAGCCCACTCGAGTTTGCT-TCACCCTTCAGTCCTCAAAGAGTAGGATGCCTTTT
1 TCCTTTCAAAGCCCACACGAG-TTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGACGCCTTTT
* *
1402742 TCCTTTCAAAGCCCGCACGAGTTCGTGGCACCCTTTAGTCCTCAAAGAGCAGGACGCCTTTT
1 TCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGACGCCTTTT
* * * * * * * *
1402804 TCCTTTCAAAGCCCACTCGGGTCGGTGGCTCCCGTTAGCCCTCAAAAAAGCAAGG-CACCTTTT
1 TCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGTCCTC-AAAGAGC-AGGACGCCTTTT
* * * * * *
1402867 TCCTCTCAAAGTCCACATGAGTTGGTCGCACCCTTTAGCCCTCAAAGAGTAGGACGCCTTTT
1 TCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGACGCCTTTT
* * * * *
1402929 TCTTTTCAAAGTCGACACGAGTTGGTGGCTCCCTTTAGTCCTCAAAGAGCAAGACG-CTTTT
1 TCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGACGCCTTTT
* * * ** * * * *
1402990 TTCTTTCAATGCCCAAACGAGTTGGTGGCATTCTTTTGT-CTAGAAAAAGCCGGACG-CTTATT
1 TCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGTCCT-CAAAGAGCAGGACGCCTT-TT
* * * * * * ** * * * *
1403052 T-TTTTTAATGCTCACAC-AGGTTAGTGGCACCCTTAAGTCCTTGAATAGAAGGACACATTTT
1 TCCTTTCAAAGCCCACACGA-GTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGACGCCTTTT
** * * * *
1403113 TGTTTTCAAAGCTCACACGAGTTGGTGGCACTCTTTACTCCTCAAAGAGCCA-GAAGCCTTTT
1 TCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGTCCTCAAAGAG-CAGGACGCCTTTT
* * * * **** * * ** *
1403175 TCTTTTCAAAG----TA-G-GATGCCT-TTTTCCTTTTGTTCTCAAAGAGTGGGACACCTTTT
1 TCCTTTCAAAGCCCACACGAGTTG-GTGGCACCCTTTAGTCCTCAAAGAGCAGGACGCCTTTT
** * * * * *
1403231 TCCTTTCATTGCCCACACGAGTTGGTGGCACTCTTTTGTCCTCAAAAAGTAGGACACCTTTT
1 TCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGACGCCTTTT
* * * *
1403293 TCCTTTCAAAGCTCACACGGGTTGGTGGCACCCTTTTGTCCACAAAGAGCAGGACGCCTTTT
1 TCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGACGCCTTTT
* * * * * * ** * * * *
1403355 T-TTTTTAGAG-CCAGATGGGTTCATGGCCCCCTCTAGTCCTCAAAAAGCAGGATGCCTTTT
1 TCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGACGCCTTTT
* * * * * *
1403415 TCATTTCAAAATCCC-CACGAGTTGGTGGCTCCATTTTGTCCTCAAAGAGCAGGACACCTTTT
1 TCCTTTC-AAAGCCCACACGAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGACGCCTTTT
* * * * * **
1403477 TCTTTTCAAAGCCCACATGTGTTGGTGGCACCCTTTAGTCCTCAAAGAGTAAGACGTATTTT
1 TCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGACGCCTTTT
* * *
1403539 TCCTTTTAAAGCCCACACGAGTTGGTGGCACCCTTTAGTTCTCAAAGAGCAGGATGCCTTTT
1 TCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGACGCCTTTT
* * * * * * * **
1403601 TCTTTTCAAAGCCCACACGTGTT-GTCGC-CGCCTTTTAGTGCTCGAAGATCAAGACGTATTTT
1 TCCTTTCAAAGCCCACACGAGTTGGTGGCAC-CC-TTTAGTCCTCAAAGAGCAGGACGCCTTTT
* * *
1403663 TCCTTTCAAAGCCCACACAAGTTGGTGGCACCTTTTAGTCCTCAAAGAGCAGGATGCCTTTT
1 TCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGACGCCTTTT
* * * * * * *
1403725 TCCATTCAAAGCCCGCACGAGTTGGTAGCACCCTTCAGTCCACAAAAAGCAGGATGCCTTTT
1 TCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGACGCCTTTT
* * * * *
1403787 TCCTTTCAAAGCCCACATGAGTTAGTGGCACCCTTTAGTCCTCAAAGGGTAGGATGCCTTCTTGA
1 TCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGACGCC-T-TT--
1403852 GT
62 -T
* *** ** * * *
1403854 GGTACCCTTT---AGTCCTCA-AAGAGCAAGACGC-CTTTTTCCTTTCAAAGCC-CACATAGTTG
1 --T--CCTTTCAAAG-CC-CACACGAGTTGGTGGCAC-----CCTTT-AG-TCCTCA-A-AG-AG
** *
1403913 GTGGCAC-CCTTTAG
50 CAGG-ACGCCTTT-T
*** * * *** * * * * **
1403927 TCC-TT-AAAGAGTAGGAC-ACTT--T--TTTCCTTTCAAAGCCCACACGAGTTGGTGGCAC-CC
1 TCCTTTCAAAGCCCA-CACGAGTTGGTGGCACCCTTT---AGTCCTCA-AAG-AGCAGG-ACGCC
*
1403984 TTTAG
59 TTT-T
** * ** ** * * * * **
1403989 TCC--TCAAAGAGCATGACGCCTT--T---TTCTTTTCAAAGCCCACACAAGTTGGTGGCAC-CC
1 TCCTTTCAAAGCCCA-CACGAGTTGGTGGCACCCTTT---AGTCCTCA-AAG-AGCAGG-ACGCC
**
1404046 GTTAG
59 -TTTT
* * * ** * **
1404051 TCC--TCAAAG---A-GC-A----G-GACA-CCTTT-TTCCTTTCAAAGCCCA-CACGAGTTTGT
1 TCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGTCC--TCAAAGAGCAGGACGCCTTT-T
* * ** * ** * *
1404101 GGCACCCTTT---AGTCCTCA-AAGAGCAGGATGCCTTTTTCCTTTCAATGCC-CACACGAGTTG
1 ----TCCTTTCAAAG-CC-CACACGAGTTGG-TGGC---ACCCTTT-AGT-CCTCA-A--AG-AG
** *
1404161 GTGGCAC-CCTTCGGTC
50 CAGG-ACGCCTT---TT
* * *
1404177 TCCTTTCAAAGCCCACACTAGTTGGTGGCACCCTTCCA-TCCTCAAAGAGCAGGATGCCTTTT
1 TCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTT-TAGTCCTCAAAGAGCAGGACGCCTTTT
* ** *
1404239 TCCTTTCAAAGCCCACACGAGTTGGTGGCACCTTTTAGTCCTTGAAGAGCACGA-GACCTTTT
1 TCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGACG-CCTTTT
* * * *
1404301 TCCTTTCAAAGCCCACAC-AGTTGGTGGCACCCTTTAGTCTTCGAAGAGTAGGACACCTTTT
1 TCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGACGCCTTTT
* * * * ** *
1404362 TCCTTTCAAAACCTACACGAGTTGGAGGCACCTTTTAGTCCTCAAAGAGTGGGATGCCTTTT
1 TCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGACGCCTTTT
* * * * * *
1404424 TCATTTCAAAGACTACACGACTTGGTGGCACCCTTTAGTCCTCAAAGAGGAGGACGTCTTTT
1 TCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGACGCCTTTT
* ** * ** * * * * * *
1404486 TCC-ATCAAAAGGGCAAACGAGTTGGTGGCATTCTTTAGCCCTCAATGTGGAAGATG-CTTTT
1 TCCTTTC-AAAGCCCACACGAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGACGCCTTTT
* ** * *
1404547 TTCTTTCAAAGCCCA-ATCGAGTTGGTGGCATTCTTTTGTCCTCAAAGAGCAGGACACCTTTT
1 TCCTTTCAAAGCCCACA-CGAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGACGCCTTTT
* ** *
1404609 TCCTTTCAAAGCCCACACGAGTTGGGGGCACCCTTTTCTCCTCAAAGAGCCA-GAAGCCTTTT
1 TCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGTCCTCAAAGAG-CAGGACGCCTTTT
* * * * ** * * **
1404671 TCTTTTCAAAGCCCGCATGGGTTGGTCACACCATTTTGTCCTCAAAGAG-AGTGATACCTTTT
1 TCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAG-GACGCCTTTT
* * * * * * *
1404733 TCTTTTCAAAGCCCACAAGAGCTGGTGGCACCTTTTACTCCTTAAAAAGCAGG-CTGCCTTTT
1 TCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGAC-GCCTTTT
* ** * **
1404795 TCCTTTCAAAGCACACACCTGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAAGACGTGTTTT
1 TCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGACGCCTTTT
* * *
1404857 TCCTTTTAAAGCCCACACGAGTTGGTGGCACCCTTTAGTTCTCAAAGAGCAGGATGCCTTTT
1 TCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGACGCCTTTT
** * *
1404919 TCCTTTCAAAGCCCGTACGAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGAAGCTTTTT
1 TCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGACGCCTTTT
* * ** * * * *
1404981 TCCTTTCAAAGGCCACAC-AGTT-ATCAACATCCTTTAGTCCTCAAAAAGCAAGATGCCTTTT
1 TCCTTTCAAAGCCCACACGAGTTGGT-GGCACCCTTTAGTCCTCAAAGAGCAGGACGCCTTTT
* * * * * * * * *
1405042 CCCTTTCGAAG-CCACAC-AATTGGTGACAACCTTTAGTCCACAAAGAGCAGGATGCATTTC
1 TCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGACGCCTTTT
* * * * * * * * *
1405102 TCTTTTCAGAGCACAGATGGGTTGGTGGCACCCTTTAGTCCTCAAGGAGTAGGATGCCTTTT
1 TCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGACGCCTTTT
* * * * * *
1405164 TCCTTTCAAAACCCACACGAGTTGGTGGCACCATTTAGTCCTTAAAAAGCAGTATGCCTTTT
1 TCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGACGCCTTTT
* * * * * ** *
1405226 TCGTTTCACAA-CCCACACGGGTTGGTGCCTCCATTTTCTCCTCAAAGAGCAGGACACCTTTT
1 TCCTTTCA-AAGCCCACACGAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGACGCCTTTT
* * * * * * **
1405288 TCTTTTCAAAGCCCGCACGTGTTGTTGGCACCCTTTAGTGCTCAAAGAGCAAGACGTATTTT
1 TCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGACGCCTTTT
* * * *
1405350 TCCTTTCAAAGCCCACACAAGTTGGTGGCACGCTTTAGTCCTCAAAGAGTAGGATGCCTTTT
1 TCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGACGCCTTTT
* * * *
1405412 TCCTTTCAAAGCCCGCA-GAGTTGGTGGCACCCTTCAGTCCTCAAAAAGCAGGATGCCTTTT
1 TCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGACGCCTTTT
* * * *
1405473 TCCTTTCAAAGCCCACACTAGTTAGTGGCACCCTTTAGTCCTCAAAGAGTAGGATGCCTTTT
1 TCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGACGCCTTTT
1405535 T
1 T
1405536 GAGTGGTACC
Statistics
Matches: 2860, Mismatches: 649, Indels: 300
0.75 0.17 0.08
Matches are distributed among these distances:
49 4 0.00
51 2 0.00
52 3 0.00
53 4 0.00
54 2 0.00
55 4 0.00
56 34 0.01
57 3 0.00
58 2 0.00
59 2 0.00
60 141 0.05
61 374 0.13
62 2077 0.73
63 88 0.03
64 7 0.00
65 9 0.00
66 2 0.00
67 1 0.00
68 9 0.00
69 24 0.01
70 11 0.00
71 7 0.00
72 9 0.00
73 10 0.00
74 12 0.00
75 9 0.00
76 3 0.00
77 6 0.00
78 1 0.00
ACGTcount: A:0.23, C:0.27, G:0.20, T:0.30
Consensus pattern (62 bp):
TCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGACGCCTTTT
Found at i:1401973 original size:379 final size:380
Alignment explanation
Indices: 1401242--1402004 Score: 1307
Period size: 379 Copynumber: 2.0 Consensus size: 380
1401232 TGGTGGCACC
* * * * *
1401242 CTTTAGTCCTCAAAGAGCAGGACGCCTTTTTCTTTTCAAATCCCGCATAAGTTGGTGGCACCCTT
1 CTTTAGTCCTCAAAGAGCACGACCCCTTTTTCTTTTCAAAGCCCACACAAGTTGGTGGCACCCTT
1401307 TAGTCCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTTGTGGCACCCTTTAG
66 TAGTCCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTTGTGGCACCCTTTAG
1401372 TCCTCAAAAAGCAAGATGCCTTTTTCCTTTCAACGCCCACACGACTTGGTGGCACCTTTCAGTCT
131 TCCTCAAAAAGCAAGATGCCTTTTTCCTTTCAACGCCCACACGACTTGGTGGCACCTTTCAGTCT
*
1401437 CCTTTCAAAGCCCACACAAGTTGGTGGCAACCTTTAGTCCTCAAAGAGCAGGATGCCTTTTTCCT
196 CCTTTCAAAGCCCACACAAGTTGGTGGCAACCTTTAGTCCTCAAAGAGCAGGATGCCTTTTTCCC
*
1401502 TTCAAAAACCACACGAGTTGGTGACACCTTTTAGTCCTCAAAAAGCAGGGTGCCTTTTTCGTTTC
261 TTCAAAAACCACACGAGTTGGTGACACCTTTTAGTCCTCAAAAAGCAGGGTGCCTTTTTCATTTC
1401567 AAACCTACACGGGTTGGTGGCCTCATTTTGTCCTCAAAGAGTAGGACTCCTTTTT
326 AAACCTACACGGGTTGGTGGCCTCATTTTGTCCTCAAAGAGTAGGACTCCTTTTT
* ** * *
1401622 CTTTAGTCCTCAAAGAGCACGACCCCTTTTT-TTTTCAAAGCCTACACGGGTTTGTGGCACCTTT
1 CTTTAGTCCTCAAAGAGCACGACCCCTTTTTCTTTTCAAAGCCCACACAAGTTGGTGGCACCCTT
* * * *
1401686 TAGTTCTGAAAGAGTATGAC-CCATTTTTCCTTTCAAAGCCCACACGAGTTTGTGGCACCCTTTA
66 TAGTCCTCAAAGAGCAGGACGCC-TTTTTCCTTTCAAAGCCCACACGAGTTTGTGGCACCCTTTA
* *
1401750 GTCCTCAAAGAGCAAGATGCCTTTTTCCTTTCAACGCCCACACGACTTGGTGGCACCTTTCCGTC
130 GTCCTCAAAAAGCAAGATGCCTTTTTCCTTTCAACGCCCACACGACTTGGTGGCACCTTTCAGTC
1401815 TCCTTTCAAAGCCCACACAAGTTGGTGGCAACCTTTAGTCCTCAAAGAGCAGGATGCCTTTTTCC
195 TCCTTTCAAAGCCCACACAAGTTGGTGGCAACCTTTAGTCCTCAAAGAGCAGGATGCCTTTTTCC
**
1401880 CTTCAAAGCCCACACGAGTTGGTGACACCTTTTAGTCCTCAAAAAGC-GGGATGCCTTTTTCATT
260 CTTCAAAAACCACACGAGTTGGTGACACCTTTTAGTCCTCAAAAAGCAGGG-TGCCTTTTTCATT
1401944 TCAAACCTACACGGGTTGGTGGCCTCATTTTGTCCTCAAAGAGTAGGACTCCTTTTT
324 TCAAACCTACACGGGTTGGTGGCCTCATTTTGTCCTCAAAGAGTAGGACTCCTTTTT
1402001 CTTT
1 CTTT
1402005 TCAAAGCCCA
Statistics
Matches: 361, Mismatches: 20, Indels: 5
0.94 0.05 0.01
Matches are distributed among these distances:
378 5 0.01
379 327 0.91
380 29 0.08
ACGTcount: A:0.23, C:0.28, G:0.18, T:0.31
Consensus pattern (380 bp):
CTTTAGTCCTCAAAGAGCACGACCCCTTTTTCTTTTCAAAGCCCACACAAGTTGGTGGCACCCTT
TAGTCCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTTGTGGCACCCTTTAG
TCCTCAAAAAGCAAGATGCCTTTTTCCTTTCAACGCCCACACGACTTGGTGGCACCTTTCAGTCT
CCTTTCAAAGCCCACACAAGTTGGTGGCAACCTTTAGTCCTCAAAGAGCAGGATGCCTTTTTCCC
TTCAAAAACCACACGAGTTGGTGACACCTTTTAGTCCTCAAAAAGCAGGGTGCCTTTTTCATTTC
AAACCTACACGGGTTGGTGGCCTCATTTTGTCCTCAAAGAGTAGGACTCCTTTTT
Found at i:1403887 original size:41 final size:41
Alignment explanation
Indices: 1403810--1403887 Score: 111
Period size: 41 Copynumber: 1.9 Consensus size: 41
1403800 CACATGAGTT
* * * *
1403810 AGTGGCACCCTTTAGTCCTCAAAGGGTAGGATGCCTTCTTG
1 AGTGGCACCCTTTAGTCCTCAAAGAGCAAGACGCCTTCTTG
*
1403851 AGTGGTACCCTTTAGTCCTCAAAGAGCAAGACGCCTT
1 AGTGGCACCCTTTAGTCCTCAAAGAGCAAGACGCCTT
1403888 TTTCCTTTCA
Statistics
Matches: 32, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
41 32 1.00
ACGTcount: A:0.23, C:0.26, G:0.24, T:0.27
Consensus pattern (41 bp):
AGTGGCACCCTTTAGTCCTCAAAGAGCAAGACGCCTTCTTG
Found at i:1403981 original size:164 final size:165
Alignment explanation
Indices: 1403687--1403997 Score: 453
Period size: 164 Copynumber: 1.9 Consensus size: 165
1403677 ACACAAGTTG
* * * *
1403687 GTGGCACCTTTTAGTCCTCAAAGAGCAGGATGCCTTTTTCCATTCAAAGCCCGCACGAGTTGGTA
1 GTGGCACCCTTTAGTCCTCAAAGAGCAAGACGCCTTTTTCCATTCAAAGCCCACACGAGTTGGTA
** *
1403752 GCACCCTTCAGTCCACAAAAAGCAGGATGCCTTTTTCCTTTCAAAGCCCACATGAGTTAGTGGCA
66 GCACCCTTCAGTCCACAAAAAGCAGGACACCTTTTTCCTTTCAAAGCCCACACGAGTTAGTGGCA
1403817 CCCTTTAGTCCTCAAAGGGTAGGATGCCTTCTTGA
131 CCCTTTAGTCCTCAAAGGGTAGGATGCCTTCTTGA
* * * *
1403852 GTGGTACCCTTTAGTCCTCAAAGAGCAAGACGCCTTTTTCCTTTCAAAGCCCACA-TAGTTGGTG
1 GTGGCACCCTTTAGTCCTCAAAGAGCAAGACGCCTTTTTCCATTCAAAGCCCACACGAGTTGGTA
* ** * * * *
1403916 GCACCCTTTAGTCCTTAAAGAGTAGGACACTTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCA
66 GCACCCTTCAGTCCACAAAAAGCAGGACACCTTTTTCCTTTCAAAGCCCACACGAGTTAGTGGCA
1403981 CCCTTTAGTCCTCAAAG
131 CCCTTTAGTCCTCAAAG
1403998 AGCATGACGC
Statistics
Matches: 128, Mismatches: 18, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
164 79 0.62
165 49 0.38
ACGTcount: A:0.24, C:0.27, G:0.20, T:0.28
Consensus pattern (165 bp):
GTGGCACCCTTTAGTCCTCAAAGAGCAAGACGCCTTTTTCCATTCAAAGCCCACACGAGTTGGTA
GCACCCTTCAGTCCACAAAAAGCAGGACACCTTTTTCCTTTCAAAGCCCACACGAGTTAGTGGCA
CCCTTTAGTCCTCAAAGGGTAGGATGCCTTCTTGA
Found at i:1404045 original size:226 final size:227
Alignment explanation
Indices: 1403634--1404059 Score: 620
Period size: 226 Copynumber: 1.9 Consensus size: 227
1403624 GTCGCCGCCT
* * * * *
1403634 TTTAGTGCTCGAAGATCAAGACGTATTTTTCCTTTCAAAGCCCACACAAGTTGGTGGCACCTTTT
1 TTTAGTCCTCAAAGAGCAAGACGCATTTTTCCTTTCAAAGCCCACACAAGTTGGTGGCACCCTTT
** *
1403699 AGTCCTCAAAGAGCAGGATGCCTTTTTCCATTCAAAGCCCGCACGAGTTGGTAGCACCCTTCAGT
66 AGTCCTCAAAGAGCAGGACACCTTTTTCCATTCAAAGCCCACACGAGTTGGTAGCACCCTTCAGT
* ** *
1403764 CCACAAAAAGCAGGATGCCTTTTTCCTTTCAAAGCCCACATGAGTTAGTGGCACCCTTTAGTCCT
131 CCACAAAAAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACAAGTTAGTGGCACCCGTTAGTCCT
1403829 CAAAGGGTAGGATGCCTTCTTGAGTGGTACCC
196 CAAAGGGTAGGATGCCTTCTTGAGTGGTACCC
* *
1403861 TTTAGTCCTCAAAGAGCAAGACGCCTTTTTCCTTTCAAAGCCCACA-TAGTTGGTGGCACCCTTT
1 TTTAGTCCTCAAAGAGCAAGACGCATTTTTCCTTTCAAAGCCCACACAAGTTGGTGGCACCCTTT
* * * * * *
1403925 AGTCCTTAAAGAGTAGGACACTTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGT
66 AGTCCTCAAAGAGCAGGACACCTTTTTCCATTCAAAGCCCACACGAGTTGGTAGCACCCTTCAGT
* * * * *
1403990 CCTCAAAGAGCATGACGCCTTTTTCTTTTCAAAGCCCACACAAGTTGGTGGCACCCGTTAGTCCT
131 CCACAAAAAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACAAGTTAGTGGCACCCGTTAGTCCT
1404055 CAAAG
196 CAAAG
1404060 AGCAGGACAC
Statistics
Matches: 174, Mismatches: 25, Indels: 1
0.87 0.12 0.00
Matches are distributed among these distances:
226 133 0.76
227 41 0.24
ACGTcount: A:0.25, C:0.27, G:0.20, T:0.29
Consensus pattern (227 bp):
TTTAGTCCTCAAAGAGCAAGACGCATTTTTCCTTTCAAAGCCCACACAAGTTGGTGGCACCCTTT
AGTCCTCAAAGAGCAGGACACCTTTTTCCATTCAAAGCCCACACGAGTTGGTAGCACCCTTCAGT
CCACAAAAAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACAAGTTAGTGGCACCCGTTAGTCCT
CAAAGGGTAGGATGCCTTCTTGAGTGGTACCC
Found at i:1404183 original size:226 final size:225
Alignment explanation
Indices: 1403951--1404393 Score: 663
Period size: 226 Copynumber: 2.0 Consensus size: 225
1403941 GACACTTTTT
* *
1403951 TCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTT-TAGTCCTCAAAGAGCATGACGCCTTTTTC
1 TCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTCCA-TCCTCAAAGAGCAGGACGCCTTTTTC
* *
1404015 TTTTCAAAGCCCACACAAGTTGGTGGCACCCGTTAGTCCTCAAAGAGCAGGACACCTTTTTCCTT
65 CTTTCAAAGCCCACACAAGTTGGTGGCACCCGTTAGTCCTCAAAGAGCACGACACCTTTTTCCTT
* **
1404080 TCAAAGCCCACACGAGTTTGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTTTCCTTTCA
130 TCAAAGCCCACAC-AGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGACACCTTTTTCCTTTCA
** *
1404145 ATGCCCACACGAGTTGGTGGCACCCTTCGGTC
194 AAACCCACACGAGTTGGAGGCACCCTTCGGTC
* *
1404177 TCCTTTCAAAGCCCACACTAGTTGGTGGCACCCTTCCATCCTCAAAGAGCAGGATGCCTTTTTCC
1 TCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTCCATCCTCAAAGAGCAGGACGCCTTTTTCC
* ** ** *
1404242 TTTCAAAGCCCACACGAGTTGGTGGCACCTTTTAGTCCTTGAAGAGCACGAGACCTTTTTCCTTT
66 TTTCAAAGCCCACACAAGTTGGTGGCACCCGTTAGTCCTCAAAGAGCACGACACCTTTTTCCTTT
* * *
1404307 CAAAGCCCACACAGTTGGTGGCACCCTTTAGTCTTCGAAGAGTAGGACACCTTTTTCCTTTCAAA
131 CAAAGCCCACACAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGACACCTTTTTCCTTTCAAA
*
1404372 ACCTACACGAGTTGGAGGCACC
196 ACCCACACGAGTTGGAGGCACC
1404394 TTTTAGTCCT
Statistics
Matches: 194, Mismatches: 22, Indels: 3
0.89 0.10 0.01
Matches are distributed among these distances:
225 65 0.34
226 128 0.66
227 1 0.01
ACGTcount: A:0.23, C:0.30, G:0.20, T:0.28
Consensus pattern (225 bp):
TCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTCCATCCTCAAAGAGCAGGACGCCTTTTTCC
TTTCAAAGCCCACACAAGTTGGTGGCACCCGTTAGTCCTCAAAGAGCACGACACCTTTTTCCTTT
CAAAGCCCACACAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGACACCTTTTTCCTTTCAAA
ACCCACACGAGTTGGAGGCACCCTTCGGTC
Found at i:1404192 original size:40 final size:40
Alignment explanation
Indices: 1404137--1404212 Score: 134
Period size: 40 Copynumber: 1.9 Consensus size: 40
1404127 GATGCCTTTT
*
1404137 TCCTTTCAATGCCCACACGAGTTGGTGGCACCCTTCGGTC
1 TCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTCGGTC
*
1404177 TCCTTTCAAAGCCCACACTAGTTGGTGGCACCCTTC
1 TCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTC
1404213 CATCCTCAAA
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
40 34 1.00
ACGTcount: A:0.17, C:0.36, G:0.20, T:0.28
Consensus pattern (40 bp):
TCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTCGGTC
Found at i:1404208 original size:164 final size:162
Alignment explanation
Indices: 1404016--1404334 Score: 498
Period size: 164 Copynumber: 2.0 Consensus size: 162
1404006 GCCTTTTTCT
1404016 TTTCAAAGCCCACACAAGTTGGTGGCACCCGTT-AGTCCTCAAAGAGCAGGACACCTTTTTCCTT
1 TTTCAAAGCCCACACAAGTTGGTGGCACCC-TTCA-TCCTCAAAGAGCAGGACACCTTTTTCCTT
* *
1404080 TCAAAGCCCACACGAGTTTGTGGCACCCTTTAGTCCTCAAAGAGCAGGATG-CCTTTTTCCTTTC
64 TCAAAGCCCACACGAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCACGA-GACCTTTTTCCTTTC
*
1404144 AATGCCCACACGAGTTGGTGGCACCCTTCGGTCTCC
128 AAAGCCCACAC-AGTTGGTGGCACCCTTCGGTCTCC
* **
1404180 TTTCAAAGCCCACACTAGTTGGTGGCACCCTTCCATCCTCAAAGAGCAGGATGCCTTTTTCCTTT
1 TTTCAAAGCCCACACAAGTTGGTGGCACCCTT-CATCCTCAAAGAGCAGGACACCTTTTTCCTTT
* **
1404245 CAAAGCCCACACGAGTTGGTGGCACCTTTTAGTCCTTGAAGAGCACGAGACCTTTTTCCTTTCAA
65 CAAAGCCCACACGAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCACGAGACCTTTTTCCTTTCAA
1404310 AGCCCACACAGTTGGTGGCACCCTT
130 AGCCCACACAGTTGGTGGCACCCTT
1404335 TAGTCTTCGA
Statistics
Matches: 143, Mismatches: 9, Indels: 7
0.90 0.06 0.04
Matches are distributed among these distances:
163 19 0.13
164 123 0.86
165 1 0.01
ACGTcount: A:0.22, C:0.31, G:0.20, T:0.27
Consensus pattern (162 bp):
TTTCAAAGCCCACACAAGTTGGTGGCACCCTTCATCCTCAAAGAGCAGGACACCTTTTTCCTTTC
AAAGCCCACACGAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCACGAGACCTTTTTCCTTTCAAA
GCCCACACAGTTGGTGGCACCCTTCGGTCTCC
Found at i:1404253 original size:102 final size:102
Alignment explanation
Indices: 1404075--1404270 Score: 340
Period size: 102 Copynumber: 1.9 Consensus size: 102
1404065 GACACCTTTT
* *
1404075 TCCTTTCAAAGCCCACACGAGTTTGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTTTCC
1 TCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTCAGTCCTCAAAGAGCAGGATGCCTTTTTCC
*
1404140 TTTCAATGCCCACACGAGTTGGTGGCACCCTTCGGTC
66 TTTCAAAGCCCACACGAGTTGGTGGCACCCTTCGGTC
*
1404177 TCCTTTCAAAGCCCACACTAGTTGGTGGCACCCTTCCA-TCCTCAAAGAGCAGGATGCCTTTTTC
1 TCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTT-CAGTCCTCAAAGAGCAGGATGCCTTTTTC
1404241 CTTTCAAAGCCCACACGAGTTGGTGGCACC
65 CTTTCAAAGCCCACACGAGTTGGTGGCACC
1404271 TTTTAGTCCT
Statistics
Matches: 89, Mismatches: 4, Indels: 2
0.94 0.04 0.02
Matches are distributed among these distances:
102 88 0.99
103 1 0.01
ACGTcount: A:0.21, C:0.32, G:0.20, T:0.27
Consensus pattern (102 bp):
TCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTCAGTCCTCAAAGAGCAGGATGCCTTTTTCC
TTTCAAAGCCCACACGAGTTGGTGGCACCCTTCGGTC
Found at i:1405574 original size:41 final size:41
Alignment explanation
Indices: 1405496--1405576 Score: 117
Period size: 41 Copynumber: 2.0 Consensus size: 41
1405486 CACACTAGTT
* * **
1405496 AGTGGCACCCTTTAGTCCTCAAAGAGTAGGATGCCTTTTTG
1 AGTGGCACCCTTTAGTCCTCAAAGAGCAAGACCCCTTTTTG
*
1405537 AGTGGTACCCTTTAGTCCTCAAAGAGCAAGACCCCTTTTT
1 AGTGGCACCCTTTAGTCCTCAAAGAGCAAGACCCCTTTTT
1405577 CCTTTCAAAG
Statistics
Matches: 35, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
41 35 1.00
ACGTcount: A:0.23, C:0.25, G:0.21, T:0.31
Consensus pattern (41 bp):
AGTGGCACCCTTTAGTCCTCAAAGAGCAAGACCCCTTTTTG
Found at i:1405576 original size:164 final size:164
Alignment explanation
Indices: 1405382--1405699 Score: 458
Period size: 164 Copynumber: 1.9 Consensus size: 164
1405372 TGGTGGCACG
* * ** *
1405382 CTTTAGTCCTCAAAGAGTAGGATGCCTTTTTCCTTTCAAAGCCCGCAGAGTTGGTGGCACCCTTC
1 CTTTAGTCCTCAAAGAGCAAGACCCCTTTTTCCTTTCAAAGCCCACAGAGTTGGTGGCACCCTTC
** *
1405447 AGTCCTCAAAAAGCAGGATGCCTTTTTCCTTTCAAAGCCCACACTAGTTAGTGGCACCCTTTAGT
66 AGTCCTCAAAAAGCAGGACACCTTTTTCCTTTCAAAGCCCACACAAGTTAGTGGCACCCTTTAGT
*
1405512 CCTCAAAGAG-TAGGATGCCTTTTTGAGTGGTACC
131 CCTCAAAGAGCT-GGACGCCTTTTTGAGTGGTACC
** *
1405546 CTTTAGTCCTCAAAGAGCAAGACCCCTTTTTCCTTTCAAAGCCCACCTAGTTGGTGGCACCCTTT
1 CTTTAGTCCTCAAAGAGCAAGACCCCTTTTTCCTTTCAAAGCCCACAGAGTTGGTGGCACCCTTC
* * * * * *
1405611 AGTCCTTAAAGAGTAGGACACTTTTTTCCTTTCAAAGCCCACACAAGTTGGTGGCACTCTTTAGT
66 AGTCCTCAAAAAGCAGGACACCTTTTTCCTTTCAAAGCCCACACAAGTTAGTGGCACCCTTTAGT
1405676 CCTCAAAGAGCTGGACGCCTTTTT
131 CCTCAAAGAGCTGGACGCCTTTTT
1405700 CTTTTCAAAG
Statistics
Matches: 135, Mismatches: 18, Indels: 2
0.87 0.12 0.01
Matches are distributed among these distances:
164 134 0.99
165 1 0.01
ACGTcount: A:0.23, C:0.27, G:0.19, T:0.31
Consensus pattern (164 bp):
CTTTAGTCCTCAAAGAGCAAGACCCCTTTTTCCTTTCAAAGCCCACAGAGTTGGTGGCACCCTTC
AGTCCTCAAAAAGCAGGACACCTTTTTCCTTTCAAAGCCCACACAAGTTAGTGGCACCCTTTAGT
CCTCAAAGAGCTGGACGCCTTTTTGAGTGGTACC
Found at i:1405583 original size:103 final size:102
Alignment explanation
Indices: 1405435--1405628 Score: 307
Period size: 103 Copynumber: 1.9 Consensus size: 102
1405425 CGCAGAGTTG
* **
1405435 GTGGCACCCTTCAGTCCTCAAAAAGCAGGATGCCTTTTTCCTTTCAAAGCCCACACTAGTTAGTG
1 GTGGCACCCTTCAGTCCTCAAAAAGCAAGACCCCTTTTTCCTTTCAAAGCCCAC-CTAGTTAGTG
1405500 GCACCCTTTAGTCCTCAAAGAGTAGGATGCCTTTTTGA
65 GCACCCTTTAGTCCTCAAAGAGTAGGATGCCTTTTTGA
* * * *
1405538 GTGGTACCCTTTAGTCCTCAAAGAGCAAGACCCCTTTTTCCTTTCAAAGCCCACCTAGTTGGTGG
1 GTGGCACCCTTCAGTCCTCAAAAAGCAAGACCCCTTTTTCCTTTCAAAGCCCACCTAGTTAGTGG
*
1405603 CACCCTTTAGTCCTTAAAGAGTAGGA
66 CACCCTTTAGTCCTCAAAGAGTAGGA
1405629 CACTTTTTTC
Statistics
Matches: 83, Mismatches: 8, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
102 35 0.42
103 48 0.58
ACGTcount: A:0.24, C:0.27, G:0.20, T:0.29
Consensus pattern (102 bp):
GTGGCACCCTTCAGTCCTCAAAAAGCAAGACCCCTTTTTCCTTTCAAAGCCCACCTAGTTAGTGG
CACCCTTTAGTCCTCAAAGAGTAGGATGCCTTTTTGA
Found at i:1405684 original size:62 final size:62
Alignment explanation
Indices: 1405538--1407199 Score: 1197
Period size: 62 Copynumber: 26.6 Consensus size: 62
1405528 GCCTTTTTGA
* * ** *
1405538 GTGGTACCCTTTAGTCCTCAAAGAGCAAGACCCCTTTTTCCTTTCAAAGCCCAC-CTAGTTG
1 GTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTTTCCTTTCAAAGCCCACACGAGTTG
* * ** * *
1405599 GTGGCACCCTTTAGTCCTTAAAGAGTAGGACACTTTTTTCCTTTCAAAGCCCACACAAGTTG
1 GTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTTTCCTTTCAAAGCCCACACGAGTTG
* * * * * *
1405661 GTGGCACTCTTTAGTCCTCAAAGAGCTGGACGCCTTTTTCTTTTCAAAGCGCACACAAGTTG
1 GTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTTTCCTTTCAAAGCCCACACGAGTTG
* *
1405723 GGGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTTTCCTTTCAAAGCCCACACGAGTTT
1 GTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTTTCCTTTCAAAGCCCACACGAGTTG
* ** * *
1405785 GTTGCACCCTTTAGTCCAAAAAAAGCAGGATGCCTTTTTCCTTTCAAAGCCCACACGAGTTT
1 GTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTTTCCTTTCAAAGCCCACACGAGTTG
* * *
1405847 GTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCATTTTCCTTTCAATGCCCACACAAGTTG
1 GTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTTTCCTTTCAAAGCCCACACGAGTTG
** * * *
1405909 GTGGCACCCTTCGGTCTCCTTTCAAAGCCCACACTAGTTGGTGGCACCCTTTAGTCC--TCAAAG
1 GTGGCACCCTTTAG--TCC--TCAAAG---A-GC-AG--GAT-G---CCTTT-TTCCTTTCAAAG
**
1405972 AGCA-A-GA--TG
50 CCCACACGAGTTG
* **** * * ** *
1405981 CCT-TTTTCCTTTCAATGCC-CACACGAGTTGG-TGGCACCTTTTAGTCC--TCAAAG---A-GC
1 -GTGGCACCCTTT-AGT-CCTCA-AAGAGCAGGAT-G--CCTTTT--TCCTTTCAAAGCCCACAC
1406037 -AG--G
57 GAGTTG
* * * * * * ** * *
1406040 ATGCCATTTTCCTTTCAATGCCCACACAAGTTGGTGGCA-CCCTTCGGTCTCCTTTCAAAGCCCA
1 GTGGCA---CCCTTT--A-GTCCTCA-AAG-AGCAGG-ATGCCTT---TTTCCTTTCAAAGCCCA
1406104 CACGAGTTG
54 CACGAGTTG
* * * * ** *
1406113 GTGGCACCCTTTAGTCCTCAAAAAGGAGGATGTCTTTTTCC-ATCAAAAGGGCAAACGAGTTG
1 GTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTTTCCTTTC-AAAGCCCACACGAGTTG
** * * * * * *
1406175 GTGGCATTCTTTAGCCCTTAATGAGCAAGATG-CTTTTTTCTTTCAAAGCCCAAACGAGTTG
1 GTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTTTCCTTTCAAAGCCCACACGAGTTG
** * * ** * *
1406236 GTGGCATTCTTTTGTCCTCAAAGAGCAAGACACTTTTTTCCTTTCAAATCCCACACGAGTTG
1 GTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTTTCCTTTCAAAGCCCACACGAGTTG
* * * * * * ** * * *
1406298 GGGGCACCCTTTACTCCTTAAAGAGCCGGAAGCTTTTTTGTTTTCAAAGCCCGCATGTGTTG
1 GTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTTTCCTTTCAAAGCCCACACGAGTTG
** * * * *
1406360 GTCACACCATTTTGTCCTCAAAGAG-AGTGATACCTTTTTCTTTTCAAAGCCCACACGAGTTG
1 GTGGCACCCTTTAGTCCTCAAAGAGCAG-GATGCCTTTTTCCTTTCAAAGCCCACACGAGTTG
* * *
1406422 GTGGCACCCTTTAGTCCTTAAAGAGTAGGATGCCTTTTTCCTTTCAAAGCCCACACGGGTTG
1 GTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTTTCCTTTCAAAGCCCACACGAGTTG
* * * ** *
1406484 GTGGCACCCTTTTGTCCTCAAAGAGCAAGACGTGTTTTTCCTTTTAAAGCCCACACGAGTTG
1 GTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTTTCCTTTCAAAGCCCACACGAGTTG
* * * *
1406546 GTGGCACCTTTTAGTTCTCAAAGAGCAAGATGCCTTTTTCCTTTCAAAGCCCGCACGAGTTG
1 GTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTTTCCTTTCAAAGCCCACACGAGTTG
* ** * * *
1406608 GTGGCACCCTTTAGTCCTCAAAAAGCATAAAGCCTTTTTGCTTTCAAAGCCCACATC-A-TTA
1 GTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTTTCCTTTCAAAGCCCACA-CGAGTTG
* * * * * * * * **
1406669 GCGACAGCCTTTAGTCCTCAAAAAGTAAGACGCCTTTTCCCTTTCAAAGCCTGCAC-AGTTG
1 GTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTTTCCTTTCAAAGCCCACACGAGTTG
** * * * * * * *
1406730 GTGGCACTTTTTAGTCCTCAAAGAGCCGAATGCCTTTTTCTTTTCAGAGCCCAGAGGGGTTG
1 GTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTTTCCTTTCAAAGCCCACACGAGTTG
* * *
1406792 GTGGCACCCTTTAGTCCTCAAAGAGGAGGATGCCTTTTTCC--TCAAAGGCCACACGAGTTT
1 GTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTTTCCTTTCAAAGCCCACACGAGTTG
* * * * * * * * * * *
1406852 GTGGTACCCTTTACTCCTTAAAAAGTAGGATACCTTTTTCGTTTCAAAACCTACATGGGTTG
1 GTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTTTCCTTTCAAAGCCCACACGAGTTG
* * * * * * * *
1406914 GTGG-TCCATTTTGTCCTCAAAGAGTAGGATACCTTTTTCTTTTCAAACCCCACACGTGTTG
1 GTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTTTCCTTTCAAAGCCCACACGAGTTG
* * * * * * **
1406975 TTGGCACCCTTTAGTTCTGAAAGTGCAAGAAGTATTTTTCCTTTCAAAGCCCACA-GAAGTTG
1 GTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTTTCCTTTCAAAGCCCACACG-AGTTG
* * * *
1407037 GTGGCACCCTTTTGTCCTCAAAGAGCAGGATGGCTTTTTCCTTTCAAAGCCCGCACTAGTTG
1 GTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTTTCCTTTCAAAGCCCACACGAGTTG
* * * * *
1407099 GTGGCACCCTTCAGTCCTCAAAAAGCAGGACGCATTTTTCCTTTCAAATCCCACACGAGTTG
1 GTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTTTCCTTTCAAAGCCCACACGAGTTG
*
1407161 GTGGCACCCTTTAGTCCTCAAAGAGTAGGATGCCTTTTT
1 GTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTTT
1407200 GAGTGGCACC
Statistics
Matches: 1255, Mismatches: 285, Indels: 121
0.76 0.17 0.07
Matches are distributed among these distances:
58 1 0.00
59 3 0.00
60 49 0.04
61 240 0.19
62 854 0.68
63 11 0.01
64 12 0.01
65 12 0.01
66 15 0.01
67 6 0.00
68 1 0.00
69 4 0.00
70 9 0.01
71 5 0.00
72 8 0.01
73 8 0.01
74 2 0.00
75 1 0.00
76 7 0.01
77 4 0.00
78 3 0.00
ACGTcount: A:0.24, C:0.26, G:0.20, T:0.30
Consensus pattern (62 bp):
GTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTTTCCTTTCAAAGCCCACACGAGTTG
Found at i:1405731 original size:226 final size:226
Alignment explanation
Indices: 1405317--1405761 Score: 667
Period size: 226 Copynumber: 2.0 Consensus size: 226
1405307 TGTTGTTGGC
* ** *
1405317 ACCCTTTAGTGCTCAAAGAGCAAGACGTATTTTTCCTTTCAAAGCCCACACAAGTTGGTGGCACG
1 ACCCTTTAGTCCTCAAAGAGCAAGACCCATTTTTCCTTTCAAAGCCCACACAAGTTGGTGGCACC
** * *
1405382 CTTTAGTCCTCAAAGAGTAGGATGCCTTTTTCCTTTCAAAGCCCGCAGAGTTGGTGGCACCCTTC
66 CTTTAGTCCTCAAAGAGTAGGACACCTTTTTCCTTTCAAAGCCCACAAAGTTGGTGGCACCCTTC
* * *
1405447 AGTCCTCAAAAAGCAGGATGCCTTTTTCCTTTCAAAGCCCACACTAGTTAGTGGCACCCTTTAGT
131 AGTCCTCAAAAAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACAAGTTAGGGGCACCCTTTAGT
*
1405512 CCTCAAAGAGTAGGATGCCTTTTTGAGTGGT
196 CCTCAAAGAGCAGGATGCCTTTTTGAGTGGT
* *
1405543 ACCCTTTAGTCCTCAAAGAGCAAGACCCCTTTTTCCTTTCAAAGCCCAC-CTAGTTGGTGGCACC
1 ACCCTTTAGTCCTCAAAGAGCAAGACCCATTTTTCCTTTCAAAGCCCACACAAGTTGGTGGCACC
* * *
1405607 CTTTAGTCCTTAAAGAGTAGGACACTTTTTTCCTTTCAAAGCCCACACAAGTTGGTGGCACTCTT
66 CTTTAGTCCTCAAAGAGTAGGACACCTTTTTCCTTTCAAAGCCCACA-AAGTTGGTGGCACCCTT
* * * * * *
1405672 TAGTCCTCAAAGAGCTGGACGCCTTTTTCTTTTCAAAGCGCACACAAGTTGGGGGCACCCTTTAG
130 CAGTCCTCAAAAAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACAAGTTAGGGGCACCCTTTAG
1405737 TCCTCAAAGAGCAGGATGCCTTTTT
195 TCCTCAAAGAGCAGGATGCCTTTTT
1405762 CCTTTCAAAG
Statistics
Matches: 195, Mismatches: 23, Indels: 2
0.89 0.10 0.01
Matches are distributed among these distances:
225 55 0.28
226 140 0.72
ACGTcount: A:0.24, C:0.27, G:0.20, T:0.29
Consensus pattern (226 bp):
ACCCTTTAGTCCTCAAAGAGCAAGACCCATTTTTCCTTTCAAAGCCCACACAAGTTGGTGGCACC
CTTTAGTCCTCAAAGAGTAGGACACCTTTTTCCTTTCAAAGCCCACAAAGTTGGTGGCACCCTTC
AGTCCTCAAAAAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACAAGTTAGGGGCACCCTTTAGT
CCTCAAAGAGCAGGATGCCTTTTTGAGTGGT
Found at i:1405999 original size:102 final size:102
Alignment explanation
Indices: 1405823--1406018 Score: 347
Period size: 102 Copynumber: 1.9 Consensus size: 102
1405813 GATGCCTTTT
* *
1405823 TCCTTTCAAAGCCCACACGAGTTTGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCATTTTCC
1 TCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAAGATGCCATTTTCC
1405888 TTTCAATGCCCACACAAGTTGGTGGCACCCTTCGGTC
66 TTTCAATGCCCACACAAGTTGGTGGCACCCTTCGGTC
* *
1405925 TCCTTTCAAAGCCCACACTAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAAGATGCCTTTTTCC
1 TCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAAGATGCCATTTTCC
*
1405990 TTTCAATGCCCACACGAGTTGGTGGCACC
66 TTTCAATGCCCACACAAGTTGGTGGCACC
1406019 TTTTAGTCCT
Statistics
Matches: 89, Mismatches: 5, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
102 89 1.00
ACGTcount: A:0.22, C:0.31, G:0.19, T:0.28
Consensus pattern (102 bp):
TCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAAGATGCCATTTTCC
TTTCAATGCCCACACAAGTTGGTGGCACCCTTCGGTC
Found at i:1406032 original size:164 final size:164
Alignment explanation
Indices: 1405761--1406241 Score: 689
Period size: 164 Copynumber: 2.9 Consensus size: 164
1405751 GATGCCTTTT
* * **
1405761 TCCTTTCAAAGCCCACACGAGTTTGTTGCACCCTTTAGTCCAAAAAAAGCAGGATGCCTTTTTCC
1 TCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGTCCTCAAAAAGCAGGATGCCTTTTTCC
* *
1405826 TTTCAAAGCCCACACGAGTTTGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCATTTTCCTTT
66 TTTCAAAGCCCACACGAGTTGGTGGCACCTTTTAGTCCTCAAAGAGCAGGATGCCATTTTCCTTT
1405891 CAATGCCCACACAAGTTGGTGGCACCCTTCGGTC
131 CAATGCCCACACAAGTTGGTGGCACCCTTCGGTC
* * *
1405925 TCCTTTCAAAGCCCACACTAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAAGATGCCTTTTTCC
1 TCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGTCCTCAAAAAGCAGGATGCCTTTTTCC
*
1405990 TTTCAATGCCCACACGAGTTGGTGGCACCTTTTAGTCCTCAAAGAGCAGGATGCCATTTTCCTTT
66 TTTCAAAGCCCACACGAGTTGGTGGCACCTTTTAGTCCTCAAAGAGCAGGATGCCATTTTCCTTT
1406055 CAATGCCCACACAAGTTGGTGGCACCCTTCGGTC
131 CAATGCCCACACAAGTTGGTGGCACCCTTCGGTC
* *
1406089 TCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGTCCTCAAAAAGGAGGATGTCTTTTTCC
1 TCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGTCCTCAAAAAGCAGGATGCCTTTTTCC
* ** * * * * * * * *
1406154 -ATCAAAAGGGCAAACGAGTTGGTGGCA-TTCTTTAGCCCTTAATGAGCAAGATG-CTTTTTTCT
66 TTTC-AAAGCCCACACGAGTTGGTGGCACCT-TTTAGTCCTCAAAGAGCAGGATGCCATTTTCCT
* * *
1406216 TTCAAAGCCCAAACGAGTTGGTGGCA
129 TTCAATGCCCACACAAGTTGGTGGCA
1406242 TTCTTTTGTC
Statistics
Matches: 285, Mismatches: 30, Indels: 5
0.89 0.09 0.02
Matches are distributed among these distances:
163 33 0.12
164 252 0.88
ACGTcount: A:0.24, C:0.28, G:0.20, T:0.28
Consensus pattern (164 bp):
TCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGTCCTCAAAAAGCAGGATGCCTTTTTCC
TTTCAAAGCCCACACGAGTTGGTGGCACCTTTTAGTCCTCAAAGAGCAGGATGCCATTTTCCTTT
CAATGCCCACACAAGTTGGTGGCACCCTTCGGTC
Found at i:1406174 original size:102 final size:102
Alignment explanation
Indices: 1405987--1406180 Score: 264
Period size: 102 Copynumber: 1.9 Consensus size: 102
1405977 GATGCCTTTT
* * *
1405987 TCCTTTCAATGCCCACACGAGTTGGTGGCACCTTTTAGTCCTCAAAGAGCAGGATGCCATTTTCC
1 TCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGTCCTCAAAAAGCAGGATGCCATTTTCC
* * *
1406052 TTTCAATGCCCACACAAGTTGGTGGCACCCTTCGGTC
66 TATCAAAGCCCAAACAAGTTGGTGGCACCCTTCGGTC
* * *
1406089 TCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGTCCTCAAAAAGGAGGATGTCTTTTTCC
1 TCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGTCCTCAAAAAGCAGGATGCCATTTTCC
** *
1406154 -ATCAAAAGGGCAAACGAGTTGGTGGCA
66 TATC-AAAGCCCAAACAAGTTGGTGGCA
1406181 TTCTTTAGCC
Statistics
Matches: 79, Mismatches: 12, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
101 2 0.03
102 77 0.97
ACGTcount: A:0.24, C:0.27, G:0.22, T:0.27
Consensus pattern (102 bp):
TCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGTCCTCAAAAAGCAGGATGCCATTTTCC
TATCAAAGCCCAAACAAGTTGGTGGCACCCTTCGGTC
Found at i:1407238 original size:41 final size:41
Alignment explanation
Indices: 1407161--1407240 Score: 124
Period size: 41 Copynumber: 2.0 Consensus size: 41
1407151 ACACGAGTTG
* * **
1407161 GTGGCACCCTTTAGTCCTCAAAGAGTAGGATGCCTTTTTGA
1 GTGGCACCCTTTAGTCCTCAAAGAGCAAGACACCTTTTTGA
1407202 GTGGCACCCTTTAGTCCTCAAAGAGCAAGACACCTTTTT
1 GTGGCACCCTTTAGTCCTCAAAGAGCAAGACACCTTTTT
1407241 CCTTTCAAAG
Statistics
Matches: 35, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
41 35 1.00
ACGTcount: A:0.24, C:0.25, G:0.21, T:0.30
Consensus pattern (41 bp):
GTGGCACCCTTTAGTCCTCAAAGAGCAAGACACCTTTTTGA
Found at i:1407273 original size:62 final size:62
Alignment explanation
Indices: 1407202--1407465 Score: 366
Period size: 62 Copynumber: 4.3 Consensus size: 62
1407192 GCCTTTTTGA
** *
1407202 GTGGCACCCTTTAGTCCTCAAAGAGCAAGACACCTTTTTCCTTTCAAAGCCTACACGAGTTG
1 GTGGCACCCTTTAGTCCTCAAAGAGCAAGATGCCTTTTTCCTTTCAAAGCCCACACGAGTTG
* * * * * *
1407264 CTGGCACCCTTTAGTCCTCAAAGAGTAGGATGGCTTTTTCTTTTCAAAGCCCACACAAGTTG
1 GTGGCACCCTTTAGTCCTCAAAGAGCAAGATGCCTTTTTCCTTTCAAAGCCCACACGAGTTG
** * *
1407326 GTGGCACCCTTTAGTCCTCAAAGAGCTGGATGCCTTTTTCTTTTCAAAGCCCACACGAGTTT
1 GTGGCACCCTTTAGTCCTCAAAGAGCAAGATGCCTTTTTCCTTTCAAAGCCCACACGAGTTG
* * * *
1407388 ATGGGACCCTTTAGTCCTCAAAGAGCAAGATGCCTTTTTCCATTCAACGCCCACACGAGTTG
1 GTGGCACCCTTTAGTCCTCAAAGAGCAAGATGCCTTTTTCCTTTCAAAGCCCACACGAGTTG
*
1407450 GTGGCACCCTTCAGTC
1 GTGGCACCCTTTAGTC
1407466 TCCTTTCAAA
Statistics
Matches: 176, Mismatches: 26, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
62 176 1.00
ACGTcount: A:0.23, C:0.28, G:0.19, T:0.29
Consensus pattern (62 bp):
GTGGCACCCTTTAGTCCTCAAAGAGCAAGATGCCTTTTTCCTTTCAAAGCCCACACGAGTTG
Found at i:1407278 original size:103 final size:103
Alignment explanation
Indices: 1407099--1407302 Score: 327
Period size: 103 Copynumber: 2.0 Consensus size: 103
1407089 GCACTAGTTG
* * * *
1407099 GTGGCACCCTTCAGTCCTCAAAAAGCAGGACGCATTTTTCCTTTCAAATCCCACACGAGTTGGTG
1 GTGGCACCCTTCAGTCCTCAAAAAGCAAGACACATTTTTCCTTTCAAAGCCCACACGAGTTGCTG
1407164 GCACCCTTTAGTCCTCAAAGAGTAGGATGCCTTTTTGA
66 GCACCCTTTAGTCCTCAAAGAGTAGGATGCCTTTTTGA
* * * *
1407202 GTGGCACCCTTTAGTCCTCAAAGAGCAAGACACCTTTTTCCTTTCAAAGCCTACACGAGTTGCTG
1 GTGGCACCCTTCAGTCCTCAAAAAGCAAGACACATTTTTCCTTTCAAAGCCCACACGAGTTGCTG
*
1407267 GCACCCTTTAGTCCTCAAAGAGTAGGATGGCTTTTT
66 GCACCCTTTAGTCCTCAAAGAGTAGGATGCCTTTTT
1407303 CTTTTCAAAG
Statistics
Matches: 92, Mismatches: 9, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
103 92 1.00
ACGTcount: A:0.24, C:0.27, G:0.20, T:0.29
Consensus pattern (103 bp):
GTGGCACCCTTCAGTCCTCAAAAAGCAAGACACATTTTTCCTTTCAAAGCCCACACGAGTTGCTG
GCACCCTTTAGTCCTCAAAGAGTAGGATGCCTTTTTGA
Found at i:1407311 original size:165 final size:165
Alignment explanation
Indices: 1407037--1407364 Score: 480
Period size: 165 Copynumber: 2.0 Consensus size: 165
1407027 ACAGAAGTTG
* * *** * * *
1407037 GTGGCACCCTTTTGTCCTCAAAGAGCAGGATGGCTTTTTCCTTTCAAAGCCCGCACTAGTTGGTG
1 GTGGCACCCTTTAGTCCTCAAAGAGCAAGACACCTTTTTCCTTTCAAAGCCCACACGAGTTGCTG
* *
1407102 GCACCCTTCAGTCCTCAAAAAGCAGGACGCATTTTTCCTTTCAAATCCCACACGAGTTGGTGGCA
66 GCACCCTTCAGTCCTCAAAAAGCAGGACGCATTTTTCCTTTCAAAGCCCACACAAGTTGGTGGCA
1407167 CCCTTTAGTCCTCAAAGAG-TAGGATGCCTTTTTGA
131 CCCTTTAGTCCTCAAAGAGCT-GGATGCCTTTTTGA
*
1407202 GTGGCACCCTTTAGTCCTCAAAGAGCAAGACACCTTTTTCCTTTCAAAGCCTACACGAGTTGCTG
1 GTGGCACCCTTTAGTCCTCAAAGAGCAAGACACCTTTTTCCTTTCAAAGCCCACACGAGTTGCTG
* * * * *
1407267 GCACCCTTTAGTCCTCAAAGAGTAGGATGGC-TTTTTCTTTTCAAAGCCCACACAAGTTGGTGGC
66 GCACCCTTCAGTCCTCAAAAAGCAGGA-CGCATTTTTCCTTTCAAAGCCCACACAAGTTGGTGGC
1407331 ACCCTTTAGTCCTCAAAGAGCTGGATGCCTTTTT
130 ACCCTTTAGTCCTCAAAGAGCTGGATGCCTTTTT
1407365 CTTTTCAAAG
Statistics
Matches: 145, Mismatches: 16, Indels: 4
0.88 0.10 0.02
Matches are distributed among these distances:
165 142 0.98
166 3 0.02
ACGTcount: A:0.23, C:0.27, G:0.20, T:0.30
Consensus pattern (165 bp):
GTGGCACCCTTTAGTCCTCAAAGAGCAAGACACCTTTTTCCTTTCAAAGCCCACACGAGTTGCTG
GCACCCTTCAGTCCTCAAAAAGCAGGACGCATTTTTCCTTTCAAAGCCCACACAAGTTGGTGGCA
CCCTTTAGTCCTCAAAGAGCTGGATGCCTTTTTGA
Found at i:1407511 original size:164 final size:163
Alignment explanation
Indices: 1407305--1407617 Score: 464
Period size: 164 Copynumber: 1.9 Consensus size: 163
1407295 GGCTTTTTCT
* * *
1407305 TTTCAAAGCCCACACAAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCTGGATGCCTTTTTCTTTT
1 TTTCAAAGCCCACACAAGTTGGTGGCACCCATTAGTCCTCAAAGAGCAGGATGCCTTTTTCCTTT
* ** *
1407370 CAAAGCCCACACGAGTTTATGGGACCCTTTAGTCCTCAAAGAGCAAGATGCCTTTTTCCATTCAA
66 CAAAGCCCACACGAGTTGATGACACCCTTTAGTCCTCAAAAAGCAAGATGCCTTTTTCCATTCAA
*
1407435 CGCCCACACGAGTTGGTGGCACCCTTCAGTCTCC
131 -ACCCACACGAGTTGGTGGCACCCTTCAGTCTCC
*
1407469 TTTCAAAGCCCACACAAGTTGGTGGCACCCATTAGTCCTCAAAGAGCAGGATGCTTTTTTCCTTT
1 TTTCAAAGCCCACACAAGTTGGTGGCACCCATTAGTCCTCAAAGAGCAGGATGCCTTTTTCCTTT
* * * * **
1407534 CAAAGCCCACACGAGTTGGTGACACCTTTTAGTCCTCAAAAAGCAGGGTGCCTTTTTCGTTTCAA
66 CAAAGCCCACACGAGTTGATGACACCCTTTAGTCCTCAAAAAGCAAGATGCCTTTTTCCATTCAA
* *
1407599 ACCTACACGGGTTGGTGGC
131 ACCCACACGAGTTGGTGGC
1407618 CTCATTTTGT
Statistics
Matches: 132, Mismatches: 17, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
163 16 0.12
164 116 0.88
ACGTcount: A:0.24, C:0.28, G:0.20, T:0.28
Consensus pattern (163 bp):
TTTCAAAGCCCACACAAGTTGGTGGCACCCATTAGTCCTCAAAGAGCAGGATGCCTTTTTCCTTT
CAAAGCCCACACGAGTTGATGACACCCTTTAGTCCTCAAAAAGCAAGATGCCTTTTTCCATTCAA
ACCCACACGAGTTGGTGGCACCCTTCAGTCTCC
Found at i:1407541 original size:62 final size:62
Alignment explanation
Indices: 1407466--1407651 Score: 214
Period size: 62 Copynumber: 3.0 Consensus size: 62
1407456 CCCTTCAGTC
*
1407466 TCCTTTCAAAGCCCACACAAGTTGGTGGCACCCATTAGTCCTCAAAGAGCAGGATGCTTTTT
1 TCCTTTCAAAGCCCACACGAGTTGGTGGCACCCATTAGTCCTCAAAGAGCAGGATGCTTTTT
* ** * * *
1407528 TCCTTTCAAAGCCCACACGAGTTGGTGACACCTTTTAGTCCTCAAAAAGCAGGGTGCCTTTT
1 TCCTTTCAAAGCCCACACGAGTTGGTGGCACCCATTAGTCCTCAAAGAGCAGGATGCTTTTT
* * * * * * *
1407590 TCGTTTCAAA-CCTACACGGGTTGGTGGC-CTCATTTTGTCCTCAAAGAGTAGGACTTCTTTTT
1 TCCTTTCAAAGCCCACACGAGTTGGTGGCACCCA-TTAGTCCTCAAAGAGCAGGA-TGCTTTTT
1407652 CTTTAGTCCT
Statistics
Matches: 102, Mismatches: 20, Indels: 4
0.81 0.16 0.03
Matches are distributed among these distances:
60 1 0.01
61 31 0.30
62 70 0.69
ACGTcount: A:0.23, C:0.26, G:0.20, T:0.31
Consensus pattern (62 bp):
TCCTTTCAAAGCCCACACGAGTTGGTGGCACCCATTAGTCCTCAAAGAGCAGGATGCTTTTT
Found at i:1407543 original size:102 final size:102
Alignment explanation
Indices: 1407367--1407559 Score: 296
Period size: 102 Copynumber: 1.9 Consensus size: 102
1407357 GCCTTTTTCT
* * * *
1407367 TTTCAAAGCCCACACGAGTTTATGGGACCCTTTAGTCCTCAAAGAGCAAGATGCCTTTTTCCATT
1 TTTCAAAGCCCACACAAGTTGATGGCACCCATTAGTCCTCAAAGAGCAAGATGCCTTTTTCCATT
* *
1407432 CAACGCCCACACGAGTTGGTGGCACCCTTCAGTCTCC
66 CAAAGCCCACACGAGTTGGTGACACCCTTCAGTCTCC
* * * *
1407469 TTTCAAAGCCCACACAAGTTGGTGGCACCCATTAGTCCTCAAAGAGCAGGATGCTTTTTTCCTTT
1 TTTCAAAGCCCACACAAGTTGATGGCACCCATTAGTCCTCAAAGAGCAAGATGCCTTTTTCCATT
1407534 CAAAGCCCACACGAGTTGGTGACACC
66 CAAAGCCCACACGAGTTGGTGACACC
1407560 TTTTAGTCCT
Statistics
Matches: 81, Mismatches: 10, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
102 81 1.00
ACGTcount: A:0.25, C:0.30, G:0.19, T:0.26
Consensus pattern (102 bp):
TTTCAAAGCCCACACAAGTTGATGGCACCCATTAGTCCTCAAAGAGCAAGATGCCTTTTTCCATT
CAAAGCCCACACGAGTTGGTGACACCCTTCAGTCTCC
Found at i:1407774 original size:62 final size:60
Alignment explanation
Indices: 1407652--1407844 Score: 215
Period size: 62 Copynumber: 3.1 Consensus size: 60
1407642 ACTTCTTTTT
* ** * * *
1407652 CTTTAGTCCTCAAAGAGCACGACCCTTTTTTTTTTCAAAGCCTACACGGGCTTGTGGCACC
1 CTTTAGTCCTCAAAGAGCAAGACCCTTTTTCCTTTCAAAGCCCACACGAG-TTGGGGCACC
* * * * *
1407713 TTTTAGTTCTGAAAGAGCATGACCCATTTTTCCTTTCAAAACCCACACGAGTTTGGGGCACC
1 CTTTAGTCCTCAAAGAGCAAGACCC-TTTTTCCTTTCAAAGCCCACACGAG-TTGGGGCACC
* *
1407775 CTTTAGTCCTCAAAGAGCAAGATTCCTTTTTCCTTTCAACGCCCACACGAGTTGGTGGCACC
1 CTTTAGTCCTCAAAGAGCAAGA-CCCTTTTTCCTTTCAAAGCCCACACGAGTTGG-GGCACC
*
1407837 CTTCAGTC
1 CTTTAGTC
1407845 TCCTTTCAAA
Statistics
Matches: 110, Mismatches: 19, Indels: 5
0.82 0.14 0.04
Matches are distributed among these distances:
61 25 0.23
62 83 0.75
63 2 0.02
ACGTcount: A:0.23, C:0.29, G:0.18, T:0.31
Consensus pattern (60 bp):
CTTTAGTCCTCAAAGAGCAAGACCCTTTTTCCTTTCAAAGCCCACACGAGTTGGGGCACC
Found at i:1407789 original size:154 final size:154
Alignment explanation
Indices: 1407500--1407970 Score: 348
Period size: 164 Copynumber: 3.0 Consensus size: 154
1407490 GTGGCACCCA
* **
1407500 TTAGTCCTCAAAGAGCAGGATGCTTTTTTCCTTTCAAAGCCCACACGAGTTGGTGACACCTTTTA
1 TTAGTCCTCAAAGAGCACGACCCTTTTTTCCTTTCAAAGCCCACACGAGTTGGTGACACCTTTTA
** * * *
1407565 GTCCTCAAAAAGCAGGGTGCCTTTTTCGTTTCAAACCTACACGGGTTGGTGGCCTCATTTTGTCC
66 GTCCTCAAAAAGCAGGGACCCTTTTTCCTTTCAAACCCACACGGGTTGGTGGCCTCATTTAGTCC
1407630 TCAAAGAGTAGGACTTCTTTTTCT
131 TCAAAGAGTAGGACTTCTTTTTCT
* * * *
1407654 TTAGTCCTCAAAGAGCACGACCCTTTTTT-TTTTCAAAGCCTACACGGGCTT-GTGGCACCTTTT
1 TTAGTCCTCAAAGAGCACGACCCTTTTTTCCTTTCAAAGCCCACACGAG-TTGGTGACACCTTTT
* * * * * *
1407717 AGTTCTGAAAGAGCA-TGACCCATTTTTCCTTTCAAAACCCACACGAGTTTGG-GGCAC-CCTTT
65 AGTCCTCAAAAAGCAGGGACCC-TTTTTCCTTTC-AAACCCACACG-GGTTGGTGGC-CTCATTT
* *
1407779 AGTCCTCAAAGAGCAAGA-TTCCTTTTTCCT
126 AGTCCTCAAAGAGTAGGACTT-CTTTTT-CT
* * * * *** * * * *
1407809 TTCAACGCCCACACGAGTTGGTGGCACCCTTCAGTCTCCTTTCAAAGCCCACACAAGTTGGTGGC
1 TT--A-GTCCTCA-AAG-AGCACG-ACCCTT--TTTTCCTTTCAAAGCCCACACGAGTTGGTGAC
* * * * * *
1407874 ACCCTTTAGTCCTCAAAGAGCA-GGATGCCTTTTTCCTTTCTAAGCCCACACGAGTTCGTGGCAC
58 ACCTTTTAGTCCTCAAAAAGCAGGGA-CCCTTTTTCCTTTC-AAACCCACACGGGTTGGTGGC-C
* * *
1407938 -CATTTAGTCCTTAAAAAGCAGGA-TTCCTTTTTC
120 TCATTTAGTCCTCAAAGAGTAGGACTT-CTTTTTC
1407971 ATTTCAAAAC
Statistics
Matches: 251, Mismatches: 47, Indels: 29
0.77 0.14 0.09
Matches are distributed among these distances:
152 3 0.01
153 51 0.20
154 66 0.26
155 10 0.04
157 1 0.00
158 5 0.02
159 2 0.01
160 2 0.01
161 6 0.02
163 8 0.03
164 95 0.38
165 2 0.01
ACGTcount: A:0.23, C:0.27, G:0.18, T:0.31
Consensus pattern (154 bp):
TTAGTCCTCAAAGAGCACGACCCTTTTTTCCTTTCAAAGCCCACACGAGTTGGTGACACCTTTTA
GTCCTCAAAAAGCAGGGACCCTTTTTCCTTTCAAACCCACACGGGTTGGTGGCCTCATTTAGTCC
TCAAAGAGTAGGACTTCTTTTTCT
Found at i:1407824 original size:379 final size:380
Alignment explanation
Indices: 1407272--1408221 Score: 1132
Period size: 379 Copynumber: 2.5 Consensus size: 380
1407262 TGCTGGCACC
* * **
1407272 CTTTAGTCCTCAAAGAGTAGGATGGCTTTTTCTTTTCAAAGCCCACACAAGTTGGTGGCACCCTT
1 CTTTAGTCCTCAAAGAGCACGATCCCTTTTTCTTTTCAAAGCCCACACAAGTTGGTGGCACCCTT
* * * *
1407337 TAGTCCTCAAAGAGCTGGATGCCTTTTTCTTTTCAAAGCCCACACGAGTTTATGGGACCCTTTAG
66 TAGTCCTCAAAGAGCTGGATCCCTTTTTCCTTTCAAAACCCACACGAGTTTAGGGGACCCTTTAG
1407402 TCCTCAAAGAGCAAGATGCCTTTTTCCATTCAACGCCCACACGAGTTGGTGGCACCCTTCAGTCT
131 TCCTCAAAGAGCAAGATGCCTTTTTCCATTCAACGCCCACACGAGTTGGTGGCACCCTTCAGTCT
*
1407467 CCTTTCAAAGCCCACACAAGTTGGTGGCACCCATTAGTCCTCAAAGAGCAGGATGCTTTTTTCCT
196 CCTTTCAAAGCCCACACAAGTTGGTGGCACCCATTAGTCCTCAAAGAGCAGGATGCCTTTTTCCT
* * * *
1407532 TTCAAAGCCCACACGAGTTGGTGACACCTTTTAGTCCTCAAAAAGCAGGGTGCCTTTTTCGTTTC
261 TTCAAAGCCCACACGAGTTCGTGACACCATTTAGTCCTCAAAAAGCAGGATGCCTTTTTCATTTC
* *
1407597 -AAACCTACACGGGTTGGTGGCCTCATTTTGTCCTCAAAGAGTAGGACTTCTTTTT
326 AAAACCCACACGAGTTGGTGGCC-CATTTTGTCCTCAAAGAGTAGGACTTCTTTTT
* * ** *
1407652 CTTTAGTCCTCAAAGAGCACGA-CCCTTTTTTTTTTCAAAGCCTACACGGGCTT-GTGGCACCTT
1 CTTTAGTCCTCAAAGAGCACGATCCCTTTTTCTTTTCAAAGCCCACACAAG-TTGGTGGCACCCT
* *
1407715 TTAGTTCTGAAAGAGCAT-GA-CCCATTTTTCCTTTCAAAACCCACACGAGTTT-GGGGCACCCT
65 TTAGTCCTCAAAGAGC-TGGATCCC-TTTTTCCTTTCAAAACCCACACGAGTTTAGGGG-ACCCT
* *
1407777 TTAGTCCTCAAAGAGCAAGATTCCTTTTTCCTTTCAACGCCCACACGAGTTGGTGGCACCCTTCA
127 TTAGTCCTCAAAGAGCAAGATGCCTTTTTCCATTCAACGCCCACACGAGTTGGTGGCACCCTTCA
*
1407842 GTCTCCTTTCAAAGCCCACACAAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTT
192 GTCTCCTTTCAAAGCCCACACAAGTTGGTGGCACCCATTAGTCCTCAAAGAGCAGGATGCCTTTT
* * * *
1407907 TCCTTTCTAAGCCCACACGAGTTCGTGGCACCATTTAGTCCTTAAAAAGCAGGATTCCTTTTTCA
257 TCCTTTCAAAGCCCACACGAGTTCGTGACACCATTTAGTCCTCAAAAAGCAGGATGCCTTTTTCA
* * * *
1407972 TTTCAAAACCCACACGAGTTGGTGGTCCATTTTGTCCTCAAATAGCAGGA-TGCCTTTTT
322 TTTCAAAACCCACACGAGTTGGTGGCCCATTTTGTCCTCAAAGAGTAGGACT-TCTTTTT
* * * ** * * * *
1408031 CCTTTCAAAGCCCACACAAGTTTG-TGGCA-CCCTTCAGTCTCCTTTCAAAGCCCATAGAAGTTG
1 -CTTT---AGTCCTCA-AAG--AGCACG-ATCCCTT---TTTCTTTTCAAAGCCCACACAAGTTG
* * * * *
1408094 GTGGCACCCATTAGTCCTCAAAGAGCAGGATGCTTTTTTCCTTTCAAAGCCCACACGAG-TT-GG
55 GTGGCACCCTTTAGTCCTCAAAGAGCTGGATCCCTTTTTCCTTTCAAAACCCACACGAGTTTAGG
* * * * * ** * * *
1408157 TGACACCTTTTAGTCCTCAAAAAGTAGGGTGCCTTTTTCGTTTCAA-ACCTACACGGGTTGGTGG
120 GGAC-CC-TTTAGTCCTCAAAGAGCAAGATGCCTTTTTCCATTCAACGCCCACACGAGTTGGTGG
1408221 C
183 C
1408222 CTCATTTTGT
Statistics
Matches: 484, Mismatches: 64, Indels: 36
0.83 0.11 0.06
Matches are distributed among these distances:
378 6 0.01
379 292 0.60
380 46 0.10
383 6 0.01
384 3 0.01
385 1 0.00
386 7 0.01
387 2 0.00
388 25 0.05
389 95 0.20
390 1 0.00
ACGTcount: A:0.23, C:0.27, G:0.19, T:0.30
Consensus pattern (380 bp):
CTTTAGTCCTCAAAGAGCACGATCCCTTTTTCTTTTCAAAGCCCACACAAGTTGGTGGCACCCTT
TAGTCCTCAAAGAGCTGGATCCCTTTTTCCTTTCAAAACCCACACGAGTTTAGGGGACCCTTTAG
TCCTCAAAGAGCAAGATGCCTTTTTCCATTCAACGCCCACACGAGTTGGTGGCACCCTTCAGTCT
CCTTTCAAAGCCCACACAAGTTGGTGGCACCCATTAGTCCTCAAAGAGCAGGATGCCTTTTTCCT
TTCAAAGCCCACACGAGTTCGTGACACCATTTAGTCCTCAAAAAGCAGGATGCCTTTTTCATTTC
AAAACCCACACGAGTTGGTGGCCCATTTTGTCCTCAAAGAGTAGGACTTCTTTTT
Found at i:1407860 original size:40 final size:40
Alignment explanation
Indices: 1407805--1407884 Score: 133
Period size: 40 Copynumber: 2.0 Consensus size: 40
1407795 GATTCCTTTT
* *
1407805 TCCTTTCAACGCCCACACGAGTTGGTGGCACCCTTCAGTC
1 TCCTTTCAAAGCCCACACAAGTTGGTGGCACCCTTCAGTC
*
1407845 TCCTTTCAAAGCCCACACAAGTTGGTGGCACCCTTTAGTC
1 TCCTTTCAAAGCCCACACAAGTTGGTGGCACCCTTCAGTC
1407885 CTCAAAGAGC
Statistics
Matches: 37, Mismatches: 3, Indels: 0
0.93 0.08 0.00
Matches are distributed among these distances:
40 37 1.00
ACGTcount: A:0.20, C:0.35, G:0.19, T:0.26
Consensus pattern (40 bp):
TCCTTTCAAAGCCCACACAAGTTGGTGGCACCCTTCAGTC
Found at i:1407875 original size:102 final size:102
Alignment explanation
Indices: 1407743--1407938 Score: 315
Period size: 102 Copynumber: 1.9 Consensus size: 102
1407733 GACCCATTTT
* *
1407743 TCCTTTCAAAACCCACACGAGTTTGGGGCACCCTTTAGTCCTCAAAGAGCAAGATTCCTTTTTCC
1 TCCTTTCAAAACCCACACAAGTTTGGGGCACCCTTTAGTCCTCAAAGAGCAAGATGCCTTTTTCC
*
1407808 TTTC-AACGCCCACACGAGTTGGTGGCACCCTTCAGTC
66 TTTCTAA-GCCCACACGAGTTCGTGGCACCCTTCAGTC
* *
1407845 TCCTTTCAAAGCCCACACAAG-TTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTTTC
1 TCCTTTCAAAACCCACACAAGTTTGG-GGCACCCTTTAGTCCTCAAAGAGCAAGATGCCTTTTTC
1407909 CTTTCTAAGCCCACACGAGTTCGTGGCACC
65 CTTTCTAAGCCCACACGAGTTCGTGGCACC
1407939 ATTTAGTCCT
Statistics
Matches: 87, Mismatches: 5, Indels: 4
0.91 0.05 0.04
Matches are distributed among these distances:
101 4 0.05
102 81 0.93
103 2 0.02
ACGTcount: A:0.22, C:0.32, G:0.18, T:0.27
Consensus pattern (102 bp):
TCCTTTCAAAACCCACACAAGTTTGGGGCACCCTTTAGTCCTCAAAGAGCAAGATGCCTTTTTCC
TTTCTAAGCCCACACGAGTTCGTGGCACCCTTCAGTC
Found at i:1408028 original size:61 final size:62
Alignment explanation
Indices: 1407845--1408061 Score: 301
Period size: 62 Copynumber: 3.5 Consensus size: 62
1407835 CCCTTCAGTC
* *
1407845 TCCTTTCAAAGCCCACACAAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTT
1 TCCTTTCAAAGCCCACACAAGTTGGTGGCACCATTTAGTCCTCAAAAAGCAGGATGCCTTTT
* * * * *
1407907 TCCTTTCTAAGCCCACACGAGTTCGTGGCACCATTTAGTCCTTAAAAAGCAGGATTCCTTTT
1 TCCTTTCAAAGCCCACACAAGTTGGTGGCACCATTTAGTCCTCAAAAAGCAGGATGCCTTTT
* * * * * *
1407969 TCATTTCAAAACCCACACGAGTTGGTGG-TCCATTTTGTCCTCAAATAGCAGGATGCCTTTT
1 TCCTTTCAAAGCCCACACAAGTTGGTGGCACCATTTAGTCCTCAAAAAGCAGGATGCCTTTT
*
1408030 TCCTTTCAAAGCCCACACAAGTTTGTGGCACC
1 TCCTTTCAAAGCCCACACAAGTTGGTGGCACC
1408062 CTTCAGTCTC
Statistics
Matches: 133, Mismatches: 21, Indels: 2
0.85 0.13 0.01
Matches are distributed among these distances:
61 52 0.39
62 81 0.61
ACGTcount: A:0.24, C:0.28, G:0.18, T:0.30
Consensus pattern (62 bp):
TCCTTTCAAAGCCCACACAAGTTGGTGGCACCATTTAGTCCTCAAAAAGCAGGATGCCTTTT
Found at i:1408123 original size:163 final size:164
Alignment explanation
Indices: 1407907--1408203 Score: 404
Period size: 163 Copynumber: 1.8 Consensus size: 164
1407897 GATGCCTTTT
* * *
1407907 TCCTTTCTAAGCCCACACGAGTTCGTGGCACCATTTAGTCCTTAAAAAGCAGGATTCCTTTTTCA
1 TCCTTTCAAAGCCCACACGAGTTCGTGGCACCATTTAGTCCTCAAAAAGCAGGATGCCTTTTTCA
* *
1407972 TTTCAAAACCCACACGAGTTGGTGGTC-CATTTT-GTCCTCAAATAGCAGGATGCCTTTTTCCTT
66 TTTCAAAACCCACACGAGTTGGT-GACACATTTTAGTCCTCAAAAAGCAGGATGCCTTTTTCCTT
1408035 TCAAAGCCCACACAAGTTTGTGGCACCCTTCAGTC
130 TCAAAGCCCACACAAGTTTGTGGCACCCTTCAGTC
* * * *
1408070 TCCTTTCAAAGCCCATA-GAAGTTGGTGGCACCCA-TTAGTCCTCAAAGAGCAGGATGCTTTTTT
1 TCCTTTCAAAGCCCACACG-AGTTCGTGGCA-CCATTTAGTCCTCAAAAAGCAGGATGCCTTTTT
* * * * * *
1408133 CCTTTCAAAGCCCACACGAGTTGGTGACACCTTTTAGTCCTCAAAAAGTAGGGTGCCTTTTTCGT
64 CATTTCAAAACCCACACGAGTTGGTGACACATTTTAGTCCTCAAAAAGCAGGATGCCTTTTTCCT
1408198 TTCAAA
129 TTCAAA
1408204 CCTACACGGG
Statistics
Matches: 115, Mismatches: 15, Indels: 7
0.84 0.11 0.05
Matches are distributed among these distances:
162 3 0.03
163 78 0.68
164 34 0.30
ACGTcount: A:0.25, C:0.27, G:0.18, T:0.31
Consensus pattern (164 bp):
TCCTTTCAAAGCCCACACGAGTTCGTGGCACCATTTAGTCCTCAAAAAGCAGGATGCCTTTTTCA
TTTCAAAACCCACACGAGTTGGTGACACATTTTAGTCCTCAAAAAGCAGGATGCCTTTTTCCTTT
CAAAGCCCACACAAGTTTGTGGCACCCTTCAGTC
Found at i:1408170 original size:62 final size:62
Alignment explanation
Indices: 1408070--1408255 Score: 200
Period size: 62 Copynumber: 3.0 Consensus size: 62
1408060 CCCTTCAGTC
* ** *
1408070 TCCTTTCAAAGCCCATA-GAAGTTGGTGGCACCCATTAGTCCTCAAAGAGCAGGATGCTTTTT
1 TCCTTTCAAAGCCCACACG-AGTTGGTGGCACCTTTTAGTCCTCAAAGAGTAGGATGCTTTTT
* * * *
1408132 TCCTTTCAAAGCCCACACGAGTTGGTGACACCTTTTAGTCCTCAAAAAGTAGGGTGCCTTTT
1 TCCTTTCAAAGCCCACACGAGTTGGTGGCACCTTTTAGTCCTCAAAGAGTAGGATGCTTTTT
* * * *
1408194 TCGTTTCAAA-CCTACACGGGTTGGTGGC-CTCATTTT-GTCCTCAAAGAGTAGGACTCCTTTTT
1 TCCTTTCAAAGCCCACACGAGTTGGTGGCAC-C-TTTTAGTCCTCAAAGAGTAGGA-TGCTTTTT
1408256 CTTTAGTCCT
Statistics
Matches: 104, Mismatches: 16, Indels: 8
0.81 0.12 0.06
Matches are distributed among these distances:
60 1 0.01
61 31 0.30
62 71 0.68
63 1 0.01
ACGTcount: A:0.23, C:0.25, G:0.20, T:0.32
Consensus pattern (62 bp):
TCCTTTCAAAGCCCACACGAGTTGGTGGCACCTTTTAGTCCTCAAAGAGTAGGATGCTTTTT
Found at i:1408228 original size:604 final size:611
Alignment explanation
Indices: 1407239--1413221 Score: 2361
Period size: 606 Copynumber: 9.7 Consensus size: 611
1407229 AGACACCTTT
* * *
1407239 TTCCTTTCAAAGCCTACACGAGTTGCTGGCACCCTTTAGTCCTCAAAGAGTAGGATGGCTTTTTC
1 TTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGTCCTCAAAGAGTAGGATGCCTTTTTC
* *
1407304 TTTTCAAAGCCCACACAAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCTGGATGCCTTTTTCTTT
66 TTTTCAAAGCCCACACAAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTTTCATT
** * * *
1407369 TCAAAGCCCACACGAGTTTATGGGACCCTTTAGTCCTCAAAGAGCAAGATGCCTTTTTCCATTCA
131 TCAAAGCCCACACGAGTTCGT-GGACCATTTAGTCCTCAAA-AGCAGGATGCCTTTTTCCTTTCA
*
1407434 ACGCCCACACGAGTTGGTGGCACCCTTCAGTCTCCTTTCAAAGCCCACACAAGTTGGTGGCACCC
194 AAGCCCACACGAGTTGGTGGCACCCTTCAGTCTCCTTTCAAAGCCCACACAAGTTGGTGGCACCC
1407499 ATTAGTCCTCAAAGAGCAGGATGCTTTTTTCCTTTCAAAGCCCACACGAGTTGGTGACACCTTTT
259 ATTAGTCCTCAAAGAGCAGGATGCTTTTTTCCTTTCAAAGCCCACACGAGTTGGTGACACCTTTT
1407564 AGTCCTCAAAAAGCAGGGTGCCTTTTTCGTTTCAAACCTACACGGGTTGGTGGCCTCATTTTGTC
324 AGTCCTCAAAAAGCAGGGTGCCTTTTTCGTTTCAAACCTACACGGGTTGGTGGCCTCATTTTGTC
*
1407629 CTCAAAGAGTAGGACTTCTTTTTCTTTAGTCCTCAAAGAGCACGA-CCCTTTTTTTTTTCAAAGC
389 CTCAAAGAGTAGGACTCCTTTTTCTTTAGTCCTCAAAGAGCACGACCCCTTTTTTTTTT-AAAGC
* ** * * *
1407693 CTACACGGGCTT-GTGGCACCTTTTAGTTCTGAAAGAGCAT-GA-CCCATTTTTCCTTTCAAAAC
453 CCACACAAG-TTGGTGGCACCCTTTAGTCCTCAAAGAGC-TGGATCCC-TTTTTCCTTTCAAAAC
* *
1407755 CCACACGAGTTT-GGGGCACCCTTTAGTCCTCAAAGAGCAAGATTCCTTTTTCCTTTCAACGCCC
515 CCACACGAGTTTAGGGG-ACCCTTTAGTCCTCAAAGAGCAAGATGCCTTTTTCCATTCAACGCCC
*
1407819 ACACGAGTTGGTGGCA-C-CC-TT-CA-G-T-C
579 ACACGAGTTCGTGGCACCTCCTTTACAGGATCC
* *
1407845 -TCCTTTCAAAGCCCACACAAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTTTC
1 TTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGTCCTCAAAGAGTAGGATGCCTTTTTC
* * * * * * * *
1407909 CTTTCTAAGCCCACACGAGTTCGTGGCACCATTTAGTCCTTAAAAAGCAGGATTCCTTTTTCATT
66 TTTTCAAAGCCCACACAAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTTTCATT
* * * *
1407974 TCAAAACCCACACGAGTTGGTGGTCCATTTTGTCCTCAAATAGCAGGATGCCTTTTTCCTTTCAA
131 TCAAAGCCCACACGAGTTCGTGGACCATTTAGTCCTCAAA-AGCAGGATGCCTTTTTCCTTTCAA
* * * *
1408039 AGCCCACACAAGTTTGTGGCACCCTTCAGTCTCCTTTCAAAGCCCATAGAAGTTGGTGGCACCCA
195 AGCCCACACGAGTTGGTGGCACCCTTCAGTCTCCTTTCAAAGCCCACACAAGTTGGTGGCACCCA
1408104 TTAGTCCTCAAAGAGCAGGATGCTTTTTTCCTTTCAAAGCCCACACGAGTTGGTGACACCTTTTA
260 TTAGTCCTCAAAGAGCAGGATGCTTTTTTCCTTTCAAAGCCCACACGAGTTGGTGACACCTTTTA
*
1408169 GTCCTCAAAAAGTAGGGTGCCTTTTTCGTTTCAAACCTACACGGGTTGGTGGCCTCATTTTGTCC
325 GTCCTCAAAAAGCAGGGTGCCTTTTTCGTTTCAAACCTACACGGGTTGGTGGCCTCATTTTGTCC
1408234 TCAAAGAGTAGGACTCCTTTTTCTTTAGTCCTCAAAGAGCACGACCCCTTTTTTTTTTAAAGCCC
390 TCAAAGAGTAGGACTCCTTTTTCTTTAGTCCTCAAAGAGCACGACCCCTTTTTTTTTTAAAGCCC
* * * *
1408299 ACACAAGTTGGTGGCGCCCTTTAGTCCTCAAAGAGCTGGATGCCTTTTTCTTTTCAAAGCCCACA
455 ACACAAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCTGGATCCCTTTTTCCTTTCAAAACCCACA
*
1408364 CGAGTTTATGGGACCCTTTAGTCCTCAAAGAGCAAGATGCCTTTTTCCATTCAACGCCCACACGA
520 CGAGTTTAGGGGACCCTTTAGTCCTCAAAGAGCAAGATGCCTTTTTCCATTCAACGCCCACACGA
1408429 GTTCGTGGCACCATTTAGTCCTTTAAAAGCAGGATTCC
585 GTTCGTGGCACC------TCCTTT---A-CAGGA-TCC
* * * * * *
1408467 TTTTTCATTTCAAAACCCACACGAGTTGGTGG-TCCATTTTGTCCTCAAAGAGTAGGACGCCTTT
1 ---TTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGTCCTCAAAGAGTAGGATGCCTTT
1408531 TTCTTTTCAAAGCCCACACAAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTTTC
63 TTCTTTTCAAAGCCCACACAAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTTTC
* * * * *
1408596 CTTTCTAAGCCCACACGAGTTCGTGGCACCATTTAGTCCTTTAAAAGCAGGATTCCTTTTTCATT
128 ATTTCAAAGCCCACACGAGTTCGTGG-ACCATTTAGTCC-TCAAAAGCAGGATGCCTTTTTCCTT
* * *
1408661 TCAAAACCCACACGAGTTGGTGGTCCATTTTGTCC-TCAAAGAGTAGGACGCCTTTTTCTTTTCA
191 TCAAAGCCCACACGAGTTGGTGG--CA-----CCCTTC----AGT-------C----TCCTTTCA
** * * * * *
1408725 AAGCCCACACGTGTTGTTGGTACCCTTTAGTCCTCAAAGAGCAAGACG-TATTTTTCCTTTCAAA
234 AAGCCCACACAAGTTGGTGGCACCCATTAGTCCTCAAAGAGCAGGATGCT-TTTTTCCTTTCAAA
* * * * * *
1408789 GCCCATA-GAAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTTTCCTTTCAAAGC
298 GCCCACACG-AGTTGGTGACACCTTTTAGTCCTCAAAAAGCAGGGTGCCTTTTTCGTTTCAAA-C
* * * * * *
1408853 CCACACGAGTTGGTGGCAC-C-TTTTAGTTCTGAAAGAGCAGGA-TGCCTTTTTCCTTTCAAAGC
361 CTACACGGGTTGGTGGC-CTCATTTT-GTCCTCAAAGAGTAGGACT-CCTTTTT-CTTT---AGT
* **** * * * *
1408915 CCACACAAGTTTGCGGCACCCTTTAGTCTCCTTTCAAAGCCCACACAAGTTGGTGGCACCCATTA
419 CCTCA-AAGAGCACGAC-CCCTTT--T-T-TTTTTAAAGCCCACACAAGTTGGTGGCACCCTTTA
* * * * * * *
1408980 GTCTTCAAAAAGCAGGATGCTTTTTTCCTTTCAAAGCCCACACGAG-TT-GGTGACACCTTTTAG
478 GTCCTCAAAGAGCTGGATCCCTTTTTCCTTTCAAAACCCACACGAGTTTAGGGGAC-CC-TTTAG
* * * ** * * * * * *
1409043 TCCTCAAAAAGCAGGGTGCCTTTTTCGTTTCAA-ACCTACTCGGGTTGGTGG--CCTCATTT---
541 TCCTCAAAGAGCAAGATGCCTTTTTCCATTCAACGCCCACACGAGTTCGTGGCACCTCCTTTACA
1409102 ---T--
606 GGATCC
* * * * ** **** * * * *
1409103 GTCC--TCAAAG---AGTAGGA-CTCCT--TTTTCTTTAGTCTTCAAAGAGCACGA-CCCTTTTT
1 TTCCTTTCAAAGCCCA-CACGAGTTGGTGGCACCCTTTAGTCCTCAAAGAGTAGGATGCC-TTTT
* * ** * * * * * *
1409159 TTTTTTCAAAGCCTACACGGGTTTGTGGCACCTTTTAGTTCTGAAAGAGCATGA-CCCATTTTTC
64 TCTTTTCAAAGCCCACACAAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCC-TTTTTC
* * * * * * *
1409223 CTTTTAAAGCCCACACGAGTTTGTGGCACCCTTTAGTCCTCAAAGAGCAAGATTCCTTTTTCTTT
128 ATTTCAAAGCCCACACGAGTTCGTGG-ACCATTTAGTCCTCAAA-AGCAGGATGCCTTTTTCCTT
* * *
1409288 TCAATGCCCACACGAGTTGGTGGCACCCTTCAGTCTCTTTTCAAAGCCCACACAAGTTGGTAGCA
191 TCAAAGCCCACACGAGTTGGTGGCACCCTTCAGTCTCCTTTCAAAGCCCACACAAGTTGGTGGCA
* * *
1409353 CCCTTTAGTCCTCAAAGAGCAGGATGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCT
256 CCCATTAGTCCTCAAAGAGCAGGATGCTTTTTTCCTTTCAAAGCCCACACGAGTTGGTGACACCT
* * * * * * ** * * *
1409418 TTTAGTTCTGAAAGAGCAGGATGCCTTTTTCCTTTCAAAGCCCACACAAGTTTGCGGCAC-CCTT
321 TTTAGTCCTCAAAAAGCAGGGTGCCTTTTTCGTTTCAAA-CCTACACGGGTTGGTGGC-CTCATT
* *** * *** ** * * * **
1409482 TAGTCTCCTTTCAAAGCCCA-CACAAGTTGGTGGCACCCATTAGTCCTCAAAAAGCAGGA-TGCT
384 T--TGTCC--TCAAAGAGTAGGACTCCTT--T----TTCTTTAGTCCTCAAAGAGCACGACCCCT
* * * * * * * *
1409545 TTTTTCCTTTCAAAGCCCACACGAGTTGGTGACACCTTTTAGTCCTCAAAAAGCAGGGTGCCTTT
439 TTTTT--TTTTAAAGCCCACACAAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCTGGATCCCTTT
* * * * * *
1409610 TTCGTTTC-AAACCTACTCG-GGTT-GGTGG-CCTCATTTTA-TCCTCAAAGAGTAGGACT-CCT
502 TTCCTTTCAAAACCCACACGAGTTTAGG-GGACC-C--TTTAGTCCTCAAAGAGCAAGA-TGCCT
* * **
1409669 TTTT-C-TT-TA-GTCCTCA-AAGAG--C-ACG-A-C-CCTTT------T--
562 TTTTCCATTCAACG-CC-CACACGAGTTCGTGGCACCTCCTTTACAGGATCC
** * * * * * * * * *
1409702 TTTTTTTCAAAGCCTACACGGGTTTGTGGCACCTTTTAGTTCTGAAAGAGCATGA-CCCATTTTT
1 TTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGTCCTCAAAGAGTAGGATGCC-TTTTT
* * * * * *
1409766 CCTTTT-AAAACCCACACGAGTTTGTGGCACCCTTTAGTCCTCAAAGAGCAAGATTCCTTTTTCT
65 -CTTTTCAAAGCCCACACAAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTTTCA
* * * * * * * *
1409830 TTTCAATGCCCACACGAGTTGGTGGCACCCTTCAGTCTCTTTTCAAAGCCCACACAAGTTG-GTA
129 TTTCAAAGCCCACACGAGTTCGTGG-ACCATTTAGTC-C---TCAAA----A-GCAGGATGCCT-
**** * ** * * *
1409894 GCACCCTTT---AGTCCTCA-AAGAGCAGGAT-G---CCTT---TTTCCTTTCTAAGCCCACACG
183 TTTTCCTTTCAAAG-CC-CACACGAGTTGG-TGGCACCCTTCAGTCTCCTTTCAAAGCCCACACA
** * * * * * * *
1409948 AGTTCATGGCA-CCATTTAGTCCTTAAAAAGCAAGATTCCTTTTTCATTTCAAAACCCACACGAG
245 AGTTGGTGGCACCCA-TTAGTCCTCAAAGAGCAGGATGCTTTTTTCCTTTCAAAGCCCACACGAG
* * * *** * *
1410012 TTGGTGGTC-CATTTT-GTCCTCAAAGAGCAGGACACCTTTTTCTTTTCAAAGCCCACAC-----
309 TTGGT-GACACCTTTTAGTCCTCAAAAAGCAGGGTGCCTTTTTCGTTTCAAA-CCTACACGGGTT
* **
1410070 -GT-G-------TTGT--T----G-GT---A--CC-----CTTTAGTCCTCAAAGAGCAAGACGT
372 GGTGGCCTCATTTTGTCCTCAAAGAGTAGGACTCCTTTTTCTTTAGTCCTCAAAGAGCACGACCC
* * * * * * * * *
1410109 ATTTTTCCTTTCAAAGCCCATAGAAGTTGGTGGCACCCTTTAGTCCTAAAAGAGCAGGATGCCTC
437 CTTTTT-TTTTTAAAGCCCACACAAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCTGGATCCCTT
* * * * * *
1410174 TTTCCTTTCAAAGCCCGCACGAG-TTAGTGGCACCCTTTAGTCCTCAAAAAACAGGATGCCTTTT
501 TTTCCTTTCAAAACCCACACGAGTTTAG-GGGACCCTTTAGTCCTCAAAGAGCAAGATGCCTTTT
* * * **
1410238 TCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGTTCTGAAAGAGCAGGATGCC
565 TCCATTCAACGCCCACACGAGTTCGTGGCA-CC--TCCTT-T-----A-CAGGAT-CC
* * * **
1410296 TTTCCCCTTTCAAAGCCCACACAAGTTTGTGGCACCCTTTAGTCCTCAAAGAGCAACATGCCTTT
1 -TT--CCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGTCCTCAAAGAGTAGGATGCCTTT
* ** **
1410361 TTCCTTTCAGCGCCCACACGTGTTGGTGGCACCC-----T--T-------CA-G-T--C----TC
63 TTCTTTTCAAAGCCCACACAAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTTTC
* * * * ** ** *
1410404 CTTTCAAAGCCCACACAAGTTGGTGGCACCCTTTAGTCCT-CAAAG-AGCAGGATGCCTTTTTCC
128 ATTTCAAAGCCCACACGAGTTCGTGG-A-CCATT--TAGTCCTCAAAAGCAGGATGCCTTTTTCC
* * * * *
1410467 TTTCAAAGCCAACACGAGTTAGTGACATCTTTTAGTCCTCAAAAAGCAGGTTGCCTTTTTCGTTT
189 TTTCAAAGCCCACACGAGTTGGTGGCA-C-------CCT------TCA-G-T--C----TCCTTT
* *** * ** * * *
1410532 CAAA-CCTACATGGGTTGGTGGC-CTCATTTTTTCCTCAAAGAGTAGGACT-CCTTTTTCTTTTC
232 CAAAGCCCACACAAGTTGGTGGCACCCA-TTAGTCCTCAAAGAGCAGGA-TGCTTTTTTCCTTTC
* ** * * * *** *** *
1410594 AAAGCCTACACTTGTTGGCGGCACCCTTTAGTCCTCACTGAGCAGGACCCCTTTTTCTTTTCAAA
295 AAAGCCCACACGAGTTGGTGACACCTTTTAGTCCTCAAAAAGCAGGGTGCCTTTTTCGTTTCAAA
* * * * * * *
1410659 GCCTACACGAGTTTGTGGCAC-CCTTTAGTTCTGAAAGAGCAGGA-TGCCTTTTTCCTTTCAAAG
360 -CCTACACGGGTTGGTGGC-CTCATTTTGTCCTCAAAGAGTAGGACT-CCTTTTT-CTTT---AG
* * ***** * ** * * * * *******
1410722 CCCACACAAGTTTGTGGCACCCTTTAGTCTTCAAAG---A-GCAAGATGCCCTTTTCCTTTCAAT
418 TCCTCA-AAGAGCACGAC-CCCTTTTTTTTTTAAAGCCCACACAAGTTGGTGGCACCCTTT--A-
* * * * * * *
1410783 GTCCAC-ACGAGTTGG-TGGCACTATTCAGTCTTCTTTCAAAGCCCACACAAG-TT-GGTGGCAC
478 GTCCTCAAAGAGCTGGAT--CCCT-TT---T-TCCTTTCAAAACCCACACGAGTTTAGG-GG-AC
* * *
1410844 CCTTTAGTCCTCAAAGAGCAGGATGCCTTTTT-CATTTCAAAGCCCACACGAGTTCATGGCACCC
534 CCTTTAGTCCTCAAAGAGCAAGATGCCTTTTTCCA-TTCAACGCCCACACGAGTTCGTGGCA-CC
*
1410908 TTTAGTCCTTAAAAAGCAGGATGCC
597 -----TCCTT---TA-CAGGAT-CC
* * * * * * * * * * ***
1410933 TTTTTCGTTTAAAAACCCGCATGGGTTGGTGG-TCCATTTTGTCCTCAAAGAGCAGGGCACCTTT
1 ---TTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGTCCTCAAAGAGTAGGATGCCTTT
*
1410997 TTCTTTTCAAAGCCCACACATGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTTTC
63 TTCTTTTCAAAGCCCACACAAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTTTC
* * * * *
1411062 TTTTCAAAGCCCACACGAGTTGGTGGCACCTTTTAGTTCTGAAAGAGCAGGATGCCTTTTTCCTT
128 ATTTCAAAGCCCACACGAGTTCGTGG-ACCATTTAGTCCTCAAA-AGCAGGATGCCTTTTTCCTT
* * * *
1411127 TCAAAGCCCACACAAGTTTGCGGCACCCTTTAGTCTCCTTTCAAAGCCCACACAAGTTGGTGGCA
191 TCAAAGCCCACACGAGTTGGTGGCACCCTTCAGTCTCCTTTCAAAGCCCACACAAGTTGGTGGCA
* *
1411192 CCCATTAGTCTTCAAAAAGCAGGATGCTTTTTTCCTTTCAAAGCCCACACGAGTTGGTGACACCT
256 CCCATTAGTCCTCAAAGAGCAGGATGCTTTTTTCCTTTCAAAGCCCACACGAGTTGGTGACACCT
*
1411257 TTTAGTCCTCAAAAAGCAGGGTGCCTTTTTCGTTTCAAACCTACTCGGGTTGGTGGCCTCATTTT
321 TTTAGTCCTCAAAAAGCAGGGTGCCTTTTTCGTTTCAAACCTACACGGGTTGGTGGCCTCATTTT
* *
1411322 GTCCTCAAAGAGTAGGACTCCTTTTTCTTTAGTCTTCAAAGAGCACGACCCTTTTTTTTTTTCAA
386 GTCCTCAAAGAGTAGGACTCCTTTTTCTTTAGTCCTCAAAGAGCACGACCCCTTTTTTTTTT-AA
* ** * * * * *
1411387 AGCCTACACGGGTTTGTGGCACCTTTTAGTTCTGAAAGAGCAT-GA-CCCATTTTTCCTTTTAAA
450 AGCCCACACAAGTTGGTGGCACCCTTTAGTCCTCAAAGAGC-TGGATCCC-TTTTTCCTTTCAAA
* * * ** *
1411450 GCCCACACGAGTTT-GTGGCACCCTTTAGTCCTCAAAGAGCAAGATTCCTTTTTCTTTTCAATGC
513 ACCCACACGAGTTTAG-GGGACCCTTTAGTCCTCAAAGAGCAAGATGCCTTTTTCCATTCAACGC
*
1411514 CCACACGAGTTGGTGGCA-C-CC-TT-CA-G-T-C
577 CCACACGAGTTCGTGGCACCTCCTTTACAGGATCC
* * * *
1411542 -TCTTTTCAAAGCCCACACAAGTTGGTAGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTTTC
1 TTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGTCCTCAAAGAGTAGGATGCCTTTTTC
* * * * * *
1411606 CTTTCAAAGCCCACACGAGTTGGTGGCACCTTTTAGTTCTGAAAGAGCAGGATGCCTTTTTCCTT
66 TTTTCAAAGCCCACACAAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTTTCATT
* * * * ** * * *
1411671 TCAAAGCCCACACAAGTTTGCGGCACCCTTTAGTCTCCTTTC-AAAGCCCACACAAG--TTGGTG
131 TCAAAGCCCACACGAGTTCGTGG-ACCATTTAG--TCC--TCAAAAG--CA-GGATGCCTT-TTT
* *** * * * *** ** ** * * *
1411733 GCACCCATTAGTCCTCA--AAAAGCAGG-ATGCTT--TTTTCCTTTCAAAGCCCACACGAGTTGG
187 CCTTTCA-AAGCCCACACGAGTTGGTGGCACCCTTCAGTCTCCTTTCAAAGCCCACACAAGTTGG
* ** * * * * * * * *
1411793 TGACACCTTTTAGTCCTCAAAAAGCAGGGTGCCTTTTTCGTTTCAAA-CCTACTCGGGTTGGTGG
251 TGGCACCCATTAGTCCTCAAAGAGCAGGATGCTTTTTTCCTTTCAAAGCCCACACGAGTTGGTGA
* * * ** * * *** **
1411857 C-CTCATTTTA-TCCTCAAAGAGTAGGACT-CCTTTTTC-TTT-AGTCCT-CAAAGAGCACG-AC
316 CAC-C-TTTTAGTCCTCAAAAAGCAGG-GTGCCTTTTTCGTTTCAAACCTAC-ACGGGTTGGTGG
* * ** ** * *** * * * *
1411915 CCT-TTTTTTTTTTCAAAGCCTA-CACGGGTTTGTGGCACCTTTTAGTTCTGAAAGAGCATGACC
377 CCTCATTTTGTCCTCAAAGAGTAGGACTCCTTT-T----TC-TTTAGTCCTCAAAGAGCACGACC
* * * * * ** *
1411978 CATTTTTCCTTTTAAAACCCACACGAGTTTGTGGCACCCTTTAGTCCTCAAAGAGCAAGATTCCT
436 CCTTTTT-TTTTTAAAGCCCACACAAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCTGGATCCCT
* ** *
1412043 TTTTCTTTTCAATGCCCACACGAG-TT-GGTGGCACCC-----T--TC--AG-TC----T--C-T
500 TTTTCCTTTCAAAACCCACACGAGTTTAGG-GG-ACCCTTTAGTCCTCAAAGAGCAAGATGCCTT
* * * **
1412089 TTT-CA---AA-GCCCACACAAGTTGGTAGCACCCTTTAGTCCTCAAAGAGCAGGATGCC
563 TTTCCATTCAACGCCCACACGAGTTCGTGGCA-CC-----TCCT---TTA-CAGGAT-CC
* ** * * * * * *
1412144 TTTTTCCTTTCTAAGCCCACACGAGTTCATGGCACCATTTAGTCCTTAAAAAGCAAGATTCCTTT
1 ---TTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGTCCTCAAAGAGTAGGATGCCTTT
* * * * * * **
1412209 TTCATTTCAAAACCCACACGAGTTGGTGG-TCCATTTTGTCCTCAAAGAGCAGGACACCTTTTTC
63 TTCTTTTCAAAGCCCACACAAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTTTC
* * * * * **
1412273 TTTTCAAAGCCCACACGTGTT-GTTGGTACCCTTTAGTCCTCAAAGAGCAAGACGTATTTTTCCT
128 ATTTCAAAGCCCACACGAGTTCG-TGG-ACCATTTAGTCCTCAAA-AGCAGGATGCCTTTTTCCT
*
1412337 TTCAAAGCCCATA-GAAGTTGGTGGCACCCTTTAGTCCTGAAAGAGCAGGATGCCTCTTTCCTTT
190 TTCAAAGCCCACACG-AGTTGGTGGCACCC-----T--T-------C---A-G--TC--TCCTTT
* * * * * *
1412401 CAAAGCCCGCACGAGTTAGTGGCACCCTTTAGTCCTCAAAAAGCAGGATGCCTTTTTCCTTTCAA
232 CAAAGCCCACACAAGTTGGTGGCACCCATTAGTCCTCAAAGAGCAGGATGCTTTTTTCCTTTCAA
* * * * * * ** *
1412466 AGCCCACACGAGTTGGTGGCACCCTTTAGTTCTGAAAGAGCAGGATGCCTTTCCCCTTTCAAAGC
297 AGCCCACACGAGTTGGTGACACCTTTTAGTCCTCAAAAAGCAGGGTGCCTTTTTCGTTTCAAA-C
* ** * * * *
1412531 CCACACAAGTTTGTGGCAC-CCTTTAGTCCTCAAAGAGCA--ACATGCCTTTTTCCTTTCAG-CG
361 CTACACGGGTTGGTGGC-CTCATTTTGTCCTCAAAGAGTAGGAC-T-CCTTTTT-CTTT-AGTC-
* * * *** * ** *
1412592 CCCACACGTGTTGGTGGCACCCTTCAGTCTCCTTTCAAAGCCCACACAAGTTGGTGGCACCCTTT
420 CTCA-AAGAG--CACGAC-CCCTT---T-TTTTTTTAAAGCCCACACAAGTTGGTGGCACCCTTT
* * * * * *
1412657 AGTCCTCAAAGAGCAGGATGCCTTTTTCCTTTCAAAGCCAACACGAG-TTA-GTGACATCTTTTA
477 AGTCCTCAAAGAGCTGGATCCCTTTTTCCTTTCAAAACCCACACGAGTTTAGGGGAC--CCTTTA
* * * ** * * * * *
1412720 GTCCTCAAAAAGCAGGTTGCCTTTTTCGTTTCAA-ACCTACATGGGTTGGTGGC-CTCATTTTTT
540 GTCCTCAAAGAGCAAGATGCCTTTTTCCATTCAACGCCCACACGAGTTCGTGGCAC-C------T
** *
1412783 CCTCAAAGAGTAGGACTCC
598 CCT---TTA-CAGGA-TCC
* * ** * ** * **
1412802 TTTTTCTTTTCAAAGCCTACACTTGTTGGCGGCACCCTTTAGTCCTCACTGAGCAGGACCCCTTT
1 ---TTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGTCCTCAAAGAGTAGGATGCCTTT
* * * * *
1412867 TTCTTTTCAAAGCCTACACGAGTTTGTGGCACCCTTTAGTTCTGAAAGAGCAGGATGCCTTTTTC
63 TTCTTTTCAAAGCCCACACAAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTTTC
* * * * * * *
1412932 CTTTCAAAGCCCACACAAGTTTGTGGCACCCTTTAGTCTTCAAAGAGCAAGATGCCCTTTTCCTT
128 ATTTCAAAGCCCACACGAGTTCGTGG-ACCATTTAGTCCTCAAA-AGCAGGATGCCTTTTTCCTT
* * ** *
1412997 TCAATGTCCACACGAGTTGGTGGCACTATTCAGTCTTCTTTCAAAGCCCACACAAGTTGGTGGCA
191 TCAAAGCCCACACGAGTTGGTGGCACCCTTCAGTCTCCTTTCAAAGCCCACACAAGTTGGTGGCA
* * * ** * *
1413062 CCCTTTAGTCCTCAAAGAGCAGGATGCCTTTTTCATTTCAAAGCCCACACGAGTTCATGGCACCC
256 CCCATTAGTCCTCAAAGAGCAGGATGCTTTTTTCCTTTCAAAGCCCACACGAGTTGGTGACACCT
* * * ** * *
1413127 TTTAGTCCTTAAAAAGCAGGATGCCTTTTTCGTTTAAAAACCCGCATGGGTTGGTGGTC-CATTT
321 TTTAGTCCTCAAAAAGCAGGGTGCCTTTTTCGTTT-CAAACCTACACGGGTTGGTGGCCTCATTT
* * *
1413191 TGTCCTCAAAGAGCAGGGCACCTTTTTCTTT
385 TGTCCTCAAAGAGTAGGACTCCTTTTTCTTT
1413222 TCAAAGCCCA
Statistics
Matches: 4075, Mismatches: 859, Indels: 857
0.70 0.15 0.15
Matches are distributed among these distances:
565 80 0.02
566 34 0.01
567 15 0.00
568 11 0.00
569 14 0.00
570 3 0.00
572 1 0.00
573 2 0.00
575 28 0.01
576 5 0.00
578 4 0.00
579 2 0.00
580 3 0.00
581 2 0.00
582 1 0.00
583 2 0.00
584 18 0.00
585 3 0.00
586 1 0.00
589 6 0.00
590 2 0.00
591 3 0.00
592 4 0.00
595 4 0.00
596 65 0.02
597 119 0.03
598 5 0.00
599 10 0.00
600 16 0.00
601 29 0.01
602 14 0.00
603 27 0.01
604 404 0.10
605 344 0.08
606 740 0.18
607 19 0.00
608 15 0.00
609 16 0.00
610 24 0.01
611 20 0.00
612 12 0.00
613 10 0.00
614 12 0.00
617 4 0.00
618 4 0.00
619 3 0.00
620 2 0.00
621 4 0.00
622 1 0.00
623 2 0.00
625 110 0.03
626 81 0.02
627 295 0.07
628 44 0.01
629 25 0.01
630 16 0.00
631 34 0.01
632 27 0.01
633 39 0.01
634 12 0.00
635 19 0.00
636 138 0.03
637 407 0.10
638 9 0.00
639 5 0.00
640 4 0.00
641 2 0.00
642 3 0.00
643 3 0.00
644 3 0.00
645 1 0.00
646 3 0.00
647 119 0.03
648 38 0.01
649 10 0.00
650 5 0.00
651 2 0.00
652 8 0.00
653 7 0.00
654 12 0.00
655 4 0.00
656 8 0.00
657 25 0.01
658 282 0.07
659 104 0.03
660 2 0.00
ACGTcount: A:0.23, C:0.27, G:0.19, T:0.31
Consensus pattern (611 bp):
TTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGTCCTCAAAGAGTAGGATGCCTTTTTC
TTTTCAAAGCCCACACAAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTTTCATT
TCAAAGCCCACACGAGTTCGTGGACCATTTAGTCCTCAAAAGCAGGATGCCTTTTTCCTTTCAAA
GCCCACACGAGTTGGTGGCACCCTTCAGTCTCCTTTCAAAGCCCACACAAGTTGGTGGCACCCAT
TAGTCCTCAAAGAGCAGGATGCTTTTTTCCTTTCAAAGCCCACACGAGTTGGTGACACCTTTTAG
TCCTCAAAAAGCAGGGTGCCTTTTTCGTTTCAAACCTACACGGGTTGGTGGCCTCATTTTGTCCT
CAAAGAGTAGGACTCCTTTTTCTTTAGTCCTCAAAGAGCACGACCCCTTTTTTTTTTAAAGCCCA
CACAAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCTGGATCCCTTTTTCCTTTCAAAACCCACAC
GAGTTTAGGGGACCCTTTAGTCCTCAAAGAGCAAGATGCCTTTTTCCATTCAACGCCCACACGAG
TTCGTGGCACCTCCTTTACAGGATCC
Found at i:1408389 original size:62 final size:62
Alignment explanation
Indices: 1408256--1408942 Score: 810
Period size: 62 Copynumber: 11.1 Consensus size: 62
1408246 ACTCCTTTTT
* ** * * * *
1408256 CTTTAGTCCTCAAAGAGCACGACCCCTTTTT-TTTTTAAAGCCCACACAAGTTGGTGGCGCC
1 CTTTAGTCCTCAAAGAGCAGGATGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACC
* * ** *
1408317 CTTTAGTCCTCAAAGAGCTGGATGCCTTTTTCTTTTCAAAGCCCACACGAGTTTATGGGACC
1 CTTTAGTCCTCAAAGAGCAGGATGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACC
* * * *
1408379 CTTTAGTCCTCAAAGAGCAAGATGCCTTTTTCCATTCAACGCCCACACGAGTTCGTGGCACC
1 CTTTAGTCCTCAAAGAGCAGGATGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACC
* * * * * *
1408441 ATTTAGTCCTTTAAA-AGCAGGATTCCTTTTTCATTTCAAAACCCACACGAGTTGGTGG-TCC
1 CTTTAGTCC-TCAAAGAGCAGGATGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACC
* * * * * *
1408502 ATTTTGTCCTCAAAGAGTAGGACGCCTTTTTCTTTTCAAAGCCCACACAAGTTGGTGGCACC
1 CTTTAGTCCTCAAAGAGCAGGATGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACC
* *
1408564 CTTTAGTCCTCAAAGAGCAGGATGCCTTTTTCCTTTCTAAGCCCACACGAGTTCGTGGCACC
1 CTTTAGTCCTCAAAGAGCAGGATGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACC
* * * * * *
1408626 ATTTAGTCCTTTAAA-AGCAGGATTCCTTTTTCATTTCAAAACCCACACGAGTTGGTGG-TCC
1 CTTTAGTCC-TCAAAGAGCAGGATGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACC
* * * * * * * *
1408687 ATTTTGTCCTCAAAGAGTAGGACGCCTTTTTCTTTTCAAAGCCCACACGTGTTGTTGGTACC
1 CTTTAGTCCTCAAAGAGCAGGATGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACC
* * ** *
1408749 CTTTAGTCCTCAAAGAGCAAGACGTATTTTTCCTTTCAAAGCCCATA-GAAGTTGGTGGCACC
1 CTTTAGTCCTCAAAGAGCAGGATGCCTTTTTCCTTTCAAAGCCCACACG-AGTTGGTGGCACC
1408811 CTTTAGTCCTCAAAGAGCAGGATGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACC
1 CTTTAGTCCTCAAAGAGCAGGATGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACC
* * * * * *
1408873 TTTTAGTTCTGAAAGAGCAGGATGCCTTTTTCCTTTCAAAGCCCACACAAGTTTGCGGCACC
1 CTTTAGTCCTCAAAGAGCAGGATGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACC
1408935 CTTTAGTC
1 CTTTAGTC
1408943 TCCTTTCAAA
Statistics
Matches: 530, Mismatches: 87, Indels: 17
0.84 0.14 0.03
Matches are distributed among these distances:
60 8 0.02
61 121 0.23
62 392 0.74
63 9 0.02
ACGTcount: A:0.24, C:0.27, G:0.19, T:0.31
Consensus pattern (62 bp):
CTTTAGTCCTCAAAGAGCAGGATGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACC
Found at i:1408569 original size:185 final size:184
Alignment explanation
Indices: 1408296--1408942 Score: 888
Period size: 185 Copynumber: 3.5 Consensus size: 184
1408286 TTTTTTAAAG
* * * * *
1408296 CCCACACAAGTTGGTGGCGCCCTTTAGTCCTCAAAGAGCT-GGATGCCTTTTTCTTTTCAAAGCC
1 CCCACACGAGTTGGTGG-TCCATTTTGTCCTCAAAGAG-TAGGACGCCTTTTTCTTTTCAAAGCC
* ** * *
1408360 CACACGAGTTTATGGGACCCTTTAGTCCTCAAAGAGCAAGATGCCTTTTTCCATTCAACGCCCAC
64 CACACAAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAAGATGCCTTTTTCCTTTCAA-GCCCAC
1408425 ACGAGTTCGTGGCACCATTTAGTCCTTTAAAAGCAGGATTCCTTTTTCATTTCAAAA
128 ACGAGTTCGTGGCACCATTTAGTCCTTTAAAAGCAGGATTCCTTTTTCATTTCAAAA
1408482 CCCACACGAGTTGGTGGTCCATTTTGTCCTCAAAGAGTAGGACGCCTTTTTCTTTTCAAAGCCCA
1 CCCACACGAGTTGGTGGTCCATTTTGTCCTCAAAGAGTAGGACGCCTTTTTCTTTTCAAAGCCCA
*
1408547 CACAAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTTTCCTTTCTAAGCCCACAC
66 CACAAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAAGATGCCTTTTTCCTTTC-AAGCCCACAC
1408612 GAGTTCGTGGCACCATTTAGTCCTTTAAAAGCAGGATTCCTTTTTCATTTCAAAA
130 GAGTTCGTGGCACCATTTAGTCCTTTAAAAGCAGGATTCCTTTTTCATTTCAAAA
1408667 CCCACACGAGTTGGTGGTCCATTTTGTCCTCAAAGAGTAGGACGCCTTTTTCTTTTCAAAGCCCA
1 CCCACACGAGTTGGTGGTCCATTTTGTCCTCAAAGAGTAGGACGCCTTTTTCTTTTCAAAGCCCA
** * * * ** *
1408732 CACGTGTTGTTGGTACCCTTTAGTCCTCAAAGAGCAAGACGTATTTTTCCTTTCAAAGCCCATA-
66 CACAAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAAGATGCCTTTTTCCTTTC-AAGCCCACAC
* * * * * *
1408796 GAAGTTGGTGGCACCCTTTAGTCC-TCAAAGAGCAGGATGCCTTTTTCCTTTCAAAG
130 G-AGTTCGTGGCACCATTTAGTCCTTTAAA-AGCAGGATTCCTTTTTCATTTCAAAA
* * * * * *
1408852 CCCACACGAGTTGGTGG-CACCTTTTAGTTCTGAAAGAGCAGGATGCCTTTTTCCTTTCAAAGCC
1 CCCACACGAGTTGGTGGTC-CATTTT-GTCCTCAAAGAGTAGGACGCCTTTTTCTTTTCAAAGCC
* *
1408916 CACACAAGTTTGCGGCACCCTTTAGTC
64 CACACAAGTTGGTGGCACCCTTTAGTC
1408943 TCCTTTCAAA
Statistics
Matches: 416, Mismatches: 39, Indels: 12
0.89 0.08 0.03
Matches are distributed among these distances:
184 7 0.02
185 337 0.81
186 72 0.17
ACGTcount: A:0.24, C:0.27, G:0.19, T:0.31
Consensus pattern (184 bp):
CCCACACGAGTTGGTGGTCCATTTTGTCCTCAAAGAGTAGGACGCCTTTTTCTTTTCAAAGCCCA
CACAAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAAGATGCCTTTTTCCTTTCAAGCCCACACG
AGTTCGTGGCACCATTTAGTCCTTTAAAAGCAGGATTCCTTTTTCATTTCAAAA
Found at i:1408760 original size:247 final size:247
Alignment explanation
Indices: 1408256--1408942 Score: 898
Period size: 247 Copynumber: 2.8 Consensus size: 247
1408246 ACTCCTTTTT
* * * *
1408256 CTTTAGTCCTCAAAGAGCACGACCCCTTTTT-TTTTTAAAGCCCACACAAGTTGGTGGCGCCCTT
1 CTTTAGTCCTCAAAGAGCAAGACGCCTTTTTCTTTTCAAAGCCCACACAAGTTGGTGGCACCCTT
* * ** * *
1408320 TAGTCCTCAAAGAGCTGGATGCCTTTTTCTTTTCAAAGCCCACACGAGTTTATGGGACCCTTTAG
66 TAGTCCTCAAAGAGCAGGATGCCTTTTTCCTTTCAAAGCCCACACGAGTTCGTGGCACCATTTAG
* *
1408385 TCCTCAAAGAGCAAGATGCCTTTTTCCA-TTCAACGCCCACACGAGTTCGTGGCACCATTTAGTC
131 TCCTCAAAGAGCAGGATGCCTTTTT-CATTTCAAAGCCCACACGAGTTCGTGGCACCATTTAGTC
* **
1408449 CTTTAAAAGCAGGATTCCTTTTTCATTTCAAAACCCACACGAGTTGGTGGTCC
195 CTTCAAAAGCAGGACGCCTTTTTCATTTCAAAACCCACACGAGTTGGTGGTCC
* * * *
1408502 ATTTTGTCCTCAAAGAGTAGGACGCCTTTTTCTTTTCAAAGCCCACACAAGTTGGTGGCACCCTT
1 CTTTAGTCCTCAAAGAGCAAGACGCCTTTTTCTTTTCAAAGCCCACACAAGTTGGTGGCACCCTT
*
1408567 TAGTCCTCAAAGAGCAGGATGCCTTTTTCCTTTCTAAGCCCACACGAGTTCGTGGCACCATTTAG
66 TAGTCCTCAAAGAGCAGGATGCCTTTTTCCTTTCAAAGCCCACACGAGTTCGTGGCACCATTTAG
* * * * * *
1408632 TCCTTTAAA-AGCAGGATTCCTTTTTCATTTCAAAACCCACACGAGTTGGTGG-TCCATTTTGTC
131 TCC-TCAAAGAGCAGGATGCCTTTTTCATTTCAAAGCCCACACGAGTTCGTGGCACCATTTAGTC
* * * * *
1408695 C-TCAAAGAGTAGGACGCCTTTTTCTTTTCAAAGCCCACACGTGTTGTTGGTACC
195 CTTCAAA-AGCAGGACGCCTTTTTCATTTCAAAACCCACACGAGTTGGTGGT-CC
** * * *
1408749 CTTTAGTCCTCAAAGAGCAAGACGTATTTTTCCTTTCAAAGCCCATAGAAGTTGGTGGCACCCTT
1 CTTTAGTCCTCAAAGAGCAAGACGCCTTTTTCTTTTCAAAGCCCACACAAGTTGGTGGCACCCTT
* *
1408814 TAGTCCTCAAAGAGCAGGATGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCTTTTAG
66 TAGTCCTCAAAGAGCAGGATGCCTTTTTCCTTTCAAAGCCCACACGAGTTCGTGGCACCATTTAG
* * * * * * *
1408879 TTCTGAAAGAGCAGGATGCCTTTTTCCTTTCAAAGCCCACACAAGTTTGCGGCACCCTTTAGTC
131 TCCTCAAAGAGCAGGATGCCTTTTTCATTTCAAAGCCCACACGAGTTCGTGGCACCATTTAGTC
1408943 TCCTTTCAAA
Statistics
Matches: 381, Mismatches: 53, Indels: 12
0.85 0.12 0.03
Matches are distributed among these distances:
245 4 0.01
246 79 0.21
247 286 0.75
248 12 0.03
ACGTcount: A:0.24, C:0.27, G:0.19, T:0.31
Consensus pattern (247 bp):
CTTTAGTCCTCAAAGAGCAAGACGCCTTTTTCTTTTCAAAGCCCACACAAGTTGGTGGCACCCTT
TAGTCCTCAAAGAGCAGGATGCCTTTTTCCTTTCAAAGCCCACACGAGTTCGTGGCACCATTTAG
TCCTCAAAGAGCAGGATGCCTTTTTCATTTCAAAGCCCACACGAGTTCGTGGCACCATTTAGTCC
TTCAAAAGCAGGACGCCTTTTTCATTTCAAAACCCACACGAGTTGGTGGTCC
Found at i:1408949 original size:40 final size:40
Alignment explanation
Indices: 1408903--1408983 Score: 135
Period size: 40 Copynumber: 2.0 Consensus size: 40
1408893 GATGCCTTTT
* *
1408903 TCCTTTCAAAGCCCACACAAGTTTGCGGCACCCTTTAGTC
1 TCCTTTCAAAGCCCACACAAGTTGGCGGCACCCATTAGTC
*
1408943 TCCTTTCAAAGCCCACACAAGTTGGTGGCACCCATTAGTC
1 TCCTTTCAAAGCCCACACAAGTTGGCGGCACCCATTAGTC
1408983 T
1 T
1408984 TCAAAAAGCA
Statistics
Matches: 38, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
40 38 1.00
ACGTcount: A:0.23, C:0.33, G:0.16, T:0.27
Consensus pattern (40 bp):
TCCTTTCAAAGCCCACACAAGTTGGCGGCACCCATTAGTC
Found at i:1409017 original size:102 final size:102
Alignment explanation
Indices: 1408841--1409027 Score: 295
Period size: 102 Copynumber: 1.8 Consensus size: 102
1408831 GATGCCTTTT
* ** * *
1408841 TCCTTTCAAAGCCCACACGAGTTGGTGGCACCTTTTAGTTCTGAAAGAGCAGGATGCCTTTTTCC
1 TCCTTTCAAAGCCCACACAAGTTGGTGGCACCCATTAGTTCTCAAAAAGCAGGATGCCTTTTTCC
1408906 TTTCAAAGCCCACACAAGTTTGCGGCACCCTTTAGTC
66 TTTCAAAGCCCACACAAGTTTGCGGCACCCTTTAGTC
*
1408943 TCCTTTCAAAGCCCACACAAGTTGGTGGCACCCATTAG-TCTTCAAAAAGCAGGATGCTTTTTTC
1 TCCTTTCAAAGCCCACACAAGTTGGTGGCACCCATTAGTTC-TCAAAAAGCAGGATGCCTTTTTC
*
1409007 CTTTCAAAGCCCACACGAGTT
65 CTTTCAAAGCCCACACAAGTT
1409028 GGTGACACCT
Statistics
Matches: 77, Mismatches: 7, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
101 2 0.03
102 75 0.97
ACGTcount: A:0.25, C:0.28, G:0.18, T:0.29
Consensus pattern (102 bp):
TCCTTTCAAAGCCCACACAAGTTGGTGGCACCCATTAGTTCTCAAAAAGCAGGATGCCTTTTTCC
TTTCAAAGCCCACACAAGTTTGCGGCACCCTTTAGTC
Found at i:1409043 original size:62 final size:62
Alignment explanation
Indices: 1408943--1409076 Score: 196
Period size: 62 Copynumber: 2.2 Consensus size: 62
1408933 CCCTTTAGTC
* * *
1408943 TCCTTTCAAAGCCCACACAAGTTGGTGGCACCCATTAGTCTTCAAAAAGCAGGATGCTTTTT
1 TCCTTTCAAAGCCCACACAAGTTGGTGACACCCATTAGTCCTCAAAAAGCAGGATGCCTTTT
* ** *
1409005 TCCTTTCAAAGCCCACACGAGTTGGTGACACCTTTTAGTCCTCAAAAAGCAGGGTGCCTTTT
1 TCCTTTCAAAGCCCACACAAGTTGGTGACACCCATTAGTCCTCAAAAAGCAGGATGCCTTTT
*
1409067 TCGTTTCAAA
1 TCCTTTCAAA
1409077 CCTACTCGGG
Statistics
Matches: 64, Mismatches: 8, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
62 64 1.00
ACGTcount: A:0.26, C:0.26, G:0.18, T:0.30
Consensus pattern (62 bp):
TCCTTTCAAAGCCCACACAAGTTGGTGACACCCATTAGTCCTCAAAAAGCAGGATGCCTTTT
Found at i:1409065 original size:164 final size:164
Alignment explanation
Indices: 1408779--1409076 Score: 488
Period size: 164 Copynumber: 1.8 Consensus size: 164
1408769 GACGTATTTT
* * * *
1408779 TCCTTTCAAAGCCCATAGAAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTTTCC
1 TCCTTTCAAAGCCCACACAAGTTGGTGGCACCCATTAGTCCTCAAAAAGCAGGATGCCTTTTTCC
* * * *
1408844 TTTCAAAGCCCACACGAGTTGGTGGCACCTTTTAGTTCTGAAAGAGCAGGATGCCTTTTTCCTTT
66 TTTCAAAGCCCACACGAGTTGGTGACACCTTTTAGTCCTCAAAAAGCAGGATGCCTTTTTCCTTT
1408909 CAAAGCCCACACAAGTTTGCGGCACCCTTTAGTC
131 CAAAGCCCACACAAGTTTGCGGCACCCTTTAGTC
* *
1408943 TCCTTTCAAAGCCCACACAAGTTGGTGGCACCCATTAGTCTTCAAAAAGCAGGATGCTTTTTTCC
1 TCCTTTCAAAGCCCACACAAGTTGGTGGCACCCATTAGTCCTCAAAAAGCAGGATGCCTTTTTCC
* *
1409008 TTTCAAAGCCCACACGAGTTGGTGACACCTTTTAGTCCTCAAAAAGCAGGGTGCCTTTTTCGTTT
66 TTTCAAAGCCCACACGAGTTGGTGACACCTTTTAGTCCTCAAAAAGCAGGATGCCTTTTTCCTTT
1409073 CAAA
131 CAAA
1409077 CCTACTCGGG
Statistics
Matches: 122, Mismatches: 12, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
164 122 1.00
ACGTcount: A:0.24, C:0.27, G:0.19, T:0.30
Consensus pattern (164 bp):
TCCTTTCAAAGCCCACACAAGTTGGTGGCACCCATTAGTCCTCAAAAAGCAGGATGCCTTTTTCC
TTTCAAAGCCCACACGAGTTGGTGACACCTTTTAGTCCTCAAAAAGCAGGATGCCTTTTTCCTTT
CAAAGCCCACACAAGTTTGCGGCACCCTTTAGTC
Found at i:1409206 original size:62 final size:62
Alignment explanation
Indices: 1409129--1409322 Score: 230
Period size: 62 Copynumber: 3.1 Consensus size: 62
1409119 ACTCCTTTTT
* * * * *
1409129 CTTTAGTCTTCAAAGAGCACGACCCTTTTTTTTTTTCAAAGCCTACACGGGTTTGTGGCACC
1 CTTTAGTCCTCAAAGAGCAAGACCCTTTTTTCTTTTCAAAGCCCACACGAGTTTGTGGCACC
* * * * *
1409191 TTTTAGTTCTGAAAGAGCATGACCCATTTTTCCTTTT-AAAGCCCACACGAGTTTGTGGCACC
1 CTTTAGTCCTCAAAGAGCAAGACCC-TTTTTTCTTTTCAAAGCCCACACGAGTTTGTGGCACC
* * *
1409253 CTTTAGTCCTCAAAGAGCAAGATTCC-TTTTTCTTTTCAATGCCCACACGAGTTGGTGGCACC
1 CTTTAGTCCTCAAAGAGCAAGA-CCCTTTTTTCTTTTCAAAGCCCACACGAGTTTGTGGCACC
*
1409315 CTTCAGTC
1 CTTTAGTC
1409323 TCTTTTCAAA
Statistics
Matches: 111, Mismatches: 18, Indels: 6
0.82 0.13 0.04
Matches are distributed among these distances:
61 9 0.08
62 91 0.82
63 11 0.10
ACGTcount: A:0.22, C:0.26, G:0.18, T:0.34
Consensus pattern (62 bp):
CTTTAGTCCTCAAAGAGCAAGACCCTTTTTTCTTTTCAAAGCCCACACGAGTTTGTGGCACC
Found at i:1409338 original size:40 final size:40
Alignment explanation
Indices: 1409283--1409362 Score: 124
Period size: 40 Copynumber: 2.0 Consensus size: 40
1409273 GATTCCTTTT
* * *
1409283 TCTTTTCAATGCCCACACGAGTTGGTGGCACCCTTCAGTC
1 TCTTTTCAAAGCCCACACAAGTTGGTAGCACCCTTCAGTC
*
1409323 TCTTTTCAAAGCCCACACAAGTTGGTAGCACCCTTTAGTC
1 TCTTTTCAAAGCCCACACAAGTTGGTAGCACCCTTCAGTC
1409363 CTCAAAGAGC
Statistics
Matches: 36, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
40 36 1.00
ACGTcount: A:0.21, C:0.31, G:0.17, T:0.30
Consensus pattern (40 bp):
TCTTTTCAAAGCCCACACAAGTTGGTAGCACCCTTCAGTC
Found at i:1409390 original size:164 final size:164
Alignment explanation
Indices: 1409008--1409620 Score: 635
Period size: 164 Copynumber: 3.8 Consensus size: 164
1408998 GCTTTTTTCC
* * * * * *
1409008 TTTCAAAGCCCACACGAGTTGGTGACACCTTTTAGTCCTCAAAAAGCAGGGTGCCTTTTTCGTTT
1 TTTCAAAGCCCACACAAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTTTCCTTT
* * * *
1409073 CAAA-CCTACTCGGGTTGGTGGC-CTCATTTT-GTCCTCAAAGAGTAGGACT-CCTTTTT-CTTT
66 CAAAGCCCACACGAGTTGGTGGCAC-C-TTTTAGTCCTCAAAGAGCAGGA-TGCCTTTTTCCTTT
* ** * * * * *
1409133 ---AGTCTTCA-AAG--AGC-ACGACCCTT--TTTTTT
128 CAAAGCCCACACAAGTTGGCGGC-ACCCTTCAGTCTCT
* ** * * * * * *
1409162 TTTCAAAGCCTACACGGGTTTGTGGCACCTTTTAGTTCTGAAAGAGCATGA-CCCATTTTTCCTT
1 TTTCAAAGCCCACACAAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCC-TTTTTCCTT
* * * * * *
1409226 TTAAAGCCCACACGAGTTTGTGGCACCCTTTAGTCCTCAAAGAGCAAGATTCCTTTTTCTTTTCA
65 TCAAAGCCCACACGAGTTGGTGGCACCTTTTAGTCCTCAAAGAGCAGGATGCCTTTTTCCTTTCA
* * *
1409291 ATGCCCACACGAGTTGGTGGCACCCTTCAGTCTCT
130 AAGCCCACACAAGTTGGCGGCACCCTTCAGTCTCT
*
1409326 TTTCAAAGCCCACACAAGTTGGTAGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTTTCCTTT
1 TTTCAAAGCCCACACAAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTTTCCTTT
* *
1409391 CAAAGCCCACACGAGTTGGTGGCACCTTTTAGTTCTGAAAGAGCAGGATGCCTTTTTCCTTTCAA
66 CAAAGCCCACACGAGTTGGTGGCACCTTTTAGTCCTCAAAGAGCAGGATGCCTTTTTCCTTTCAA
* * *
1409456 AGCCCACACAAGTTTGCGGCACCCTTTAGTCTCC
131 AGCCCACACAAGTTGGCGGCACCCTTCAGTCTCT
* * *
1409490 TTTCAAAGCCCACACAAGTTGGTGGCACCCATTAGTCCTCAAAAAGCAGGATGCTTTTTTCCTTT
1 TTTCAAAGCCCACACAAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTTTCCTTT
* * * *
1409555 CAAAGCCCACACGAGTTGGTGACACCTTTTAGTCCTCAAAAAGCAGGGTGCCTTTTTCGTTTCAA
66 CAAAGCCCACACGAGTTGGTGGCACCTTTTAGTCCTCAAAGAGCAGGATGCCTTTTTCCTTTCAA
1409620 A
131 A
1409621 CCTACTCGGG
Statistics
Matches: 378, Mismatches: 65, Indels: 22
0.81 0.14 0.05
Matches are distributed among these distances:
153 2 0.01
154 58 0.15
155 37 0.10
156 4 0.01
159 4 0.01
160 2 0.01
162 7 0.02
163 1 0.00
164 261 0.69
165 2 0.01
ACGTcount: A:0.23, C:0.27, G:0.19, T:0.31
Consensus pattern (164 bp):
TTTCAAAGCCCACACAAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTTTCCTTT
CAAAGCCCACACGAGTTGGTGGCACCTTTTAGTCCTCAAAGAGCAGGATGCCTTTTTCCTTTCAA
AGCCCACACAAGTTGGCGGCACCCTTCAGTCTCT
Found at i:1409404 original size:102 final size:101
Alignment explanation
Indices: 1409223--1409416 Score: 316
Period size: 102 Copynumber: 1.9 Consensus size: 101
1409213 CCCATTTTTC
* * * * *
1409223 CTTTTAAAGCCCACACGAGTTTGTGGCACCCTTTAGTCCTCAAAGAGCAAGATTCCTTTTTCTTT
1 CTTTTAAAGCCCACACAAGTTGGTAGCACCCTTTAGTCCTCAAAGAGCAAGATGCCTTTTTCCTT
*
1409288 TCAATGCCCACACGAGTTGGTGGCACCCTTCAGTCT
66 TCAAAGCCCACACGAGTTGGTGGCACCCTTCAGTCT
*
1409324 CTTTTCAAAGCCCACACAAGTTGGTAGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTTTCCT
1 CTTTT-AAAGCCCACACAAGTTGGTAGCACCCTTTAGTCCTCAAAGAGCAAGATGCCTTTTTCCT
1409389 TTCAAAGCCCACACGAGTTGGTGGCACC
65 TTCAAAGCCCACACGAGTTGGTGGCACC
1409417 TTTTAGTTCT
Statistics
Matches: 85, Mismatches: 7, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
101 5 0.06
102 80 0.94
ACGTcount: A:0.23, C:0.29, G:0.19, T:0.29
Consensus pattern (101 bp):
CTTTTAAAGCCCACACAAGTTGGTAGCACCCTTTAGTCCTCAAAGAGCAAGATGCCTTTTTCCTT
TCAAAGCCCACACGAGTTGGTGGCACCCTTCAGTCT
Found at i:1409423 original size:62 final size:62
Alignment explanation
Indices: 1409326--1409486 Score: 259
Period size: 62 Copynumber: 2.6 Consensus size: 62
1409316 TTCAGTCTCT
*
1409326 TTTCAAAGCCCACACAAGTTGGTAGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTTTCC
1 TTTCAAAGCCCACACAAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTTTCC
* * * *
1409388 TTTCAAAGCCCACACGAGTTGGTGGCACCTTTTAGTTCTGAAAGAGCAGGATGCCTTTTTCC
1 TTTCAAAGCCCACACAAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTTTCC
* *
1409450 TTTCAAAGCCCACACAAGTTTGCGGCACCCTTTAGTC
1 TTTCAAAGCCCACACAAGTTGGTGGCACCCTTTAGTC
1409487 TCCTTTCAAA
Statistics
Matches: 89, Mismatches: 10, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
62 89 1.00
ACGTcount: A:0.24, C:0.28, G:0.19, T:0.29
Consensus pattern (62 bp):
TTTCAAAGCCCACACAAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTTTCC
Found at i:1409437 original size:544 final size:544
Alignment explanation
Indices: 1408782--1410013 Score: 2293
Period size: 544 Copynumber: 2.3 Consensus size: 544
1408772 GTATTTTTCC
* * *
1408782 TTTCAAAGCCCATAGAAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTTTCCTTT
1 TTTCAAAGCCCACACAAGTTGGTAGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTTTCCTTT
1408847 CAAAGCCCACACGAGTTGGTGGCACCTTTTAGTTCTGAAAGAGCAGGATGCCTTTTTCCTTTCAA
66 CAAAGCCCACACGAGTTGGTGGCACCTTTTAGTTCTGAAAGAGCAGGATGCCTTTTTCCTTTCAA
1408912 AGCCCACACAAGTTTGCGGCACCCTTTAGTCTCCTTTCAAAGCCCACACAAGTTGGTGGCACCCA
131 AGCCCACACAAGTTTGCGGCACCCTTTAGTCTCCTTTCAAAGCCCACACAAGTTGGTGGCACCCA
*
1408977 TTAGTCTTCAAAAAGCAGGATGCTTTTTTCCTTTCAAAGCCCACACGAGTTGGTGACACCTTTTA
196 TTAGTCCTCAAAAAGCAGGATGCTTTTTTCCTTTCAAAGCCCACACGAGTTGGTGACACCTTTTA
*
1409042 GTCCTCAAAAAGCAGGGTGCCTTTTTCGTTTCAAACCTACTCGGGTTGGTGGCCTCATTTTGTCC
261 GTCCTCAAAAAGCAGGGTGCCTTTTTCGTTTCAAACCTACTCGGGTTGGTGGCCTCATTTTATCC
*
1409107 TCAAAGAGTAGGACTCCTTTTTCTTTAGTCTTCAAAGAGCACGACCCTTTTTTTTTTTCAAAGCC
326 TCAAAGAGTAGGACTCCTTTTTCTTTAGTCCTCAAAGAGCACGACCCTTTTTTTTTTTCAAAGCC
*
1409172 TACACGGGTTTGTGGCACCTTTTAGTTCTGAAAGAGCATGACCCATTTTTCCTTTTAAAGCCCAC
391 TACACGGGTTTGTGGCACCTTTTAGTTCTGAAAGAGCATGACCCATTTTTCCTTTTAAAACCCAC
1409237 ACGAGTTTGTGGCACCCTTTAGTCCTCAAAGAGCAAGATTCCTTTTTCTTTTCAATGCCCACACG
456 ACGAGTTTGTGGCACCCTTTAGTCCTCAAAGAGCAAGATTCCTTTTTCTTTTCAATGCCCACACG
1409302 AGTTGGTGGCACCCTTCAGTCTCT
521 AGTTGGTGGCACCCTTCAGTCTCT
1409326 TTTCAAAGCCCACACAAGTTGGTAGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTTTCCTTT
1 TTTCAAAGCCCACACAAGTTGGTAGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTTTCCTTT
1409391 CAAAGCCCACACGAGTTGGTGGCACCTTTTAGTTCTGAAAGAGCAGGATGCCTTTTTCCTTTCAA
66 CAAAGCCCACACGAGTTGGTGGCACCTTTTAGTTCTGAAAGAGCAGGATGCCTTTTTCCTTTCAA
1409456 AGCCCACACAAGTTTGCGGCACCCTTTAGTCTCCTTTCAAAGCCCACACAAGTTGGTGGCACCCA
131 AGCCCACACAAGTTTGCGGCACCCTTTAGTCTCCTTTCAAAGCCCACACAAGTTGGTGGCACCCA
1409521 TTAGTCCTCAAAAAGCAGGATGCTTTTTTCCTTTCAAAGCCCACACGAGTTGGTGACACCTTTTA
196 TTAGTCCTCAAAAAGCAGGATGCTTTTTTCCTTTCAAAGCCCACACGAGTTGGTGACACCTTTTA
1409586 GTCCTCAAAAAGCAGGGTGCCTTTTTCGTTTCAAACCTACTCGGGTTGGTGGCCTCATTTTATCC
261 GTCCTCAAAAAGCAGGGTGCCTTTTTCGTTTCAAACCTACTCGGGTTGGTGGCCTCATTTTATCC
1409651 TCAAAGAGTAGGACTCCTTTTTCTTTAGTCCTCAAAGAGCACGACCCTTTTTTTTTTTCAAAGCC
326 TCAAAGAGTAGGACTCCTTTTTCTTTAGTCCTCAAAGAGCACGACCCTTTTTTTTTTTCAAAGCC
1409716 TACACGGGTTTGTGGCACCTTTTAGTTCTGAAAGAGCATGACCCATTTTTCCTTTTAAAACCCAC
391 TACACGGGTTTGTGGCACCTTTTAGTTCTGAAAGAGCATGACCCATTTTTCCTTTTAAAACCCAC
1409781 ACGAGTTTGTGGCACCCTTTAGTCCTCAAAGAGCAAGATTCCTTTTTCTTTTCAATGCCCACACG
456 ACGAGTTTGTGGCACCCTTTAGTCCTCAAAGAGCAAGATTCCTTTTTCTTTTCAATGCCCACACG
1409846 AGTTGGTGGCACCCTTCAGTCTCT
521 AGTTGGTGGCACCCTTCAGTCTCT
1409870 TTTCAAAGCCCACACAAGTTGGTAGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTTTCCTTT
1 TTTCAAAGCCCACACAAGTTGGTAGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTTTCCTTT
* ** * * * * * * *
1409935 CTAAGCCCACACGAGTTCATGGCACCATTTAGTCCTTAAAAAGCAAGATTCCTTTTTCATTTCAA
66 CAAAGCCCACACGAGTTGGTGGCACCTTTTAGTTCTGAAAGAGCAGGATGCCTTTTTCCTTTCAA
* *
1410000 AACCCACACGAGTT
131 AGCCCACACAAGTT
1410014 GGTGGTCCAT
Statistics
Matches: 669, Mismatches: 19, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
544 669 1.00
ACGTcount: A:0.24, C:0.27, G:0.18, T:0.31
Consensus pattern (544 bp):
TTTCAAAGCCCACACAAGTTGGTAGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTTTCCTTT
CAAAGCCCACACGAGTTGGTGGCACCTTTTAGTTCTGAAAGAGCAGGATGCCTTTTTCCTTTCAA
AGCCCACACAAGTTTGCGGCACCCTTTAGTCTCCTTTCAAAGCCCACACAAGTTGGTGGCACCCA
TTAGTCCTCAAAAAGCAGGATGCTTTTTTCCTTTCAAAGCCCACACGAGTTGGTGACACCTTTTA
GTCCTCAAAAAGCAGGGTGCCTTTTTCGTTTCAAACCTACTCGGGTTGGTGGCCTCATTTTATCC
TCAAAGAGTAGGACTCCTTTTTCTTTAGTCCTCAAAGAGCACGACCCTTTTTTTTTTTCAAAGCC
TACACGGGTTTGTGGCACCTTTTAGTTCTGAAAGAGCATGACCCATTTTTCCTTTTAAAACCCAC
ACGAGTTTGTGGCACCCTTTAGTCCTCAAAGAGCAAGATTCCTTTTTCTTTTCAATGCCCACACG
AGTTGGTGGCACCCTTCAGTCTCT
Found at i:1409491 original size:102 final size:102
Alignment explanation
Indices: 1409385--1409571 Score: 302
Period size: 102 Copynumber: 1.8 Consensus size: 102
1409375 GATGCCTTTT
* ** * * *
1409385 TCCTTTCAAAGCCCACACGAGTTGGTGGCACCTTTTAGTTCTGAAAGAGCAGGATGCCTTTTTCC
1 TCCTTTCAAAGCCCACACAAGTTGGTGGCACCCATTAGTCCTCAAAAAGCAGGATGCCTTTTTCC
1409450 TTTCAAAGCCCACACAAGTTTGCGGCACCCTTTAGTC
66 TTTCAAAGCCCACACAAGTTTGCGGCACCCTTTAGTC
*
1409487 TCCTTTCAAAGCCCACACAAGTTGGTGGCACCCATTAGTCCTCAAAAAGCAGGATGCTTTTTTCC
1 TCCTTTCAAAGCCCACACAAGTTGGTGGCACCCATTAGTCCTCAAAAAGCAGGATGCCTTTTTCC
*
1409552 TTTCAAAGCCCACACGAGTT
66 TTTCAAAGCCCACACAAGTT
1409572 GGTGACACCT
Statistics
Matches: 77, Mismatches: 8, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
102 77 1.00
ACGTcount: A:0.25, C:0.29, G:0.18, T:0.28
Consensus pattern (102 bp):
TCCTTTCAAAGCCCACACAAGTTGGTGGCACCCATTAGTCCTCAAAAAGCAGGATGCCTTTTTCC
TTTCAAAGCCCACACAAGTTTGCGGCACCCTTTAGTC
Found at i:1409493 original size:40 final size:40
Alignment explanation
Indices: 1409447--1409526 Score: 133
Period size: 40 Copynumber: 2.0 Consensus size: 40
1409437 GATGCCTTTT
* *
1409447 TCCTTTCAAAGCCCACACAAGTTTGCGGCACCCTTTAGTC
1 TCCTTTCAAAGCCCACACAAGTTGGCGGCACCCATTAGTC
*
1409487 TCCTTTCAAAGCCCACACAAGTTGGTGGCACCCATTAGTC
1 TCCTTTCAAAGCCCACACAAGTTGGCGGCACCCATTAGTC
1409527 CTCAAAAAGC
Statistics
Matches: 37, Mismatches: 3, Indels: 0
0.93 0.08 0.00
Matches are distributed among these distances:
40 37 1.00
ACGTcount: A:0.24, C:0.34, G:0.16, T:0.26
Consensus pattern (40 bp):
TCCTTTCAAAGCCCACACAAGTTGGCGGCACCCATTAGTC
Found at i:1409647 original size:62 final size:62
Alignment explanation
Indices: 1409487--1409620 Score: 205
Period size: 62 Copynumber: 2.2 Consensus size: 62
1409477 CCCTTTAGTC
* * ** *
1409487 TCCTTTCAAAGCCCACACAAGTTGGTGGCACCCATTAGTCCTCAAAAAGCAGGATGCTTTTT
1 TCCTTTCAAAGCCCACACGAGTTGGTGACACCTTTTAGTCCTCAAAAAGCAGGATGCCTTTT
*
1409549 TCCTTTCAAAGCCCACACGAGTTGGTGACACCTTTTAGTCCTCAAAAAGCAGGGTGCCTTTT
1 TCCTTTCAAAGCCCACACGAGTTGGTGACACCTTTTAGTCCTCAAAAAGCAGGATGCCTTTT
*
1409611 TCGTTTCAAA
1 TCCTTTCAAA
1409621 CCTACTCGGG
Statistics
Matches: 65, Mismatches: 7, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
62 65 1.00
ACGTcount: A:0.26, C:0.27, G:0.18, T:0.29
Consensus pattern (62 bp):
TCCTTTCAAAGCCCACACGAGTTGGTGACACCTTTTAGTCCTCAAAAAGCAGGATGCCTTTT
Found at i:1409703 original size:31 final size:30
Alignment explanation
Indices: 1409644--1409702 Score: 84
Period size: 31 Copynumber: 2.0 Consensus size: 30
1409634 GTGGCCTCAT
* *
1409644 TTTATCCTCAAAGAGTAGGACTCCTTTTTC
1 TTTATCCTCAAAGAGCACGACTCCTTTTTC
1409674 TTTAGTCCTCAAAGAGCACGAC-CCTTTTT
1 TTTA-TCCTCAAAGAGCACGACTCCTTTTT
1409703 TTTTTTCAAA
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
30 11 0.42
31 15 0.58
ACGTcount: A:0.24, C:0.25, G:0.14, T:0.37
Consensus pattern (30 bp):
TTTATCCTCAAAGAGCACGACTCCTTTTTC
Found at i:1409711 original size:380 final size:380
Alignment explanation
Indices: 1409325--1410056 Score: 1018
Period size: 380 Copynumber: 1.9 Consensus size: 380
1409315 CTTCAGTCTC
*
1409325 TTTTCAAAGCCCACACAAGTTGGTAGCACCCTTTAGTCCTCAAAGAGCAGGATGCC-TTTTTCCT
1 TTTTCAAAGCCCACACAAGTTGGTAGCACCCTTTAGTCCTCAAAGAGCAGGA-CCCATTTTTCCT
* * * * *
1409389 TTCAAAGCCCACACGAGTTGGTGGCACCTTTTAGTTCTGAAAGAGCAGGATGCCTTTTTCCTTTC
65 TTCAAAACCCACACGAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAAGATGCCTTTTTCCTTTC
* * *
1409454 AAAGCCCACACAAGTTTGCGGCACCCTTTAGTCTCCTTTCAAAGCCCACACAAGTTGGTGGCACC
130 AAAGCCCACACAAGTTGGCGGCACCCTTCAGTCTCCTTTCAAAGCCCACACAAGTTGGTAGCACC
* ** *
1409519 CATTAGTCCTCAAAAAGCAGGATGCTTTTTTCCTTTCAAAGCCCACACGAGTTGGTGACACCTTT
195 CATTAGTCCTCAAAAAGCAGGATGCCTTTTTCCTTTCAAAGCCCACACGAGTTCATGACACCATT
* * * * * *
1409584 TAGTCCTCAAAAAGCAGGGTGCCTTTTTCGTTTC-AAACCTACTCGGGTTGGTGGCCTCATTTTA
260 TAGTCCTCAAAAAGCAAGATGCCTTTTTCATTTCAAAACCCACACGAGTTGGTGGCC-CATTTTA
* *
1409648 TCCTCAAAGAGTAGGACTCCTTTTTCTTTAGTCCTCAAAGAGCACGACCCTTTTTTT
324 TCCTCAAAGAGCAGGACACCTTTTTCTTTAGTCCTCAAAGAGCACGACCCTTTTTTT
* ** * * * * * *
1409705 TTTTCAAAGCCTACACGGGTTTGTGGCACCTTTTAGTTCTGAAAGAGCATGACCCATTTTTCCTT
1 TTTTCAAAGCCCACACAAGTTGGTAGCACCCTTTAGTCCTCAAAGAGCAGGACCCATTTTTCCTT
* * * *
1409770 TTAAAACCCACACGAGTTTGTGGCACCCTTTAGTCCTCAAAGAGCAAGATTCCTTTTTCTTTTCA
66 TCAAAACCCACACGAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAAGATGCCTTTTTCCTTTCA
* * * *
1409835 ATGCCCACACGAGTTGGTGGCACCCTTCAGTCTCTTTTCAAAGCCCACACAAGTTGGTAGCACCC
131 AAGCCCACACAAGTTGGCGGCACCCTTCAGTCTCCTTTCAAAGCCCACACAAGTTGGTAGCACCC
* * * *
1409900 TTTAGTCCTCAAAGAGCAGGATGCCTTTTTCCTTTCTAAGCCCACACGAGTTCATGGCACCATTT
196 ATTAGTCCTCAAAAAGCAGGATGCCTTTTTCCTTTCAAAGCCCACACGAGTTCATGACACCATTT
* * * *
1409965 AGTCCTTAAAAAGCAAGATTCCTTTTTCATTTCAAAACCCACACGAGTTGGTGGTCCATTTTGTC
261 AGTCCTCAAAAAGCAAGATGCCTTTTTCATTTCAAAACCCACACGAGTTGGTGGCCCATTTTATC
1410030 CTCAAAGAGCAGGACACCTTTTTCTTT
326 CTCAAAGAGCAGGACACCTTTTTCTTT
1410057 TCAAAGCCCA
Statistics
Matches: 304, Mismatches: 46, Indels: 4
0.86 0.13 0.01
Matches are distributed among these distances:
379 2 0.01
380 284 0.93
381 18 0.06
ACGTcount: A:0.24, C:0.27, G:0.18, T:0.31
Consensus pattern (380 bp):
TTTTCAAAGCCCACACAAGTTGGTAGCACCCTTTAGTCCTCAAAGAGCAGGACCCATTTTTCCTT
TCAAAACCCACACGAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAAGATGCCTTTTTCCTTTCA
AAGCCCACACAAGTTGGCGGCACCCTTCAGTCTCCTTTCAAAGCCCACACAAGTTGGTAGCACCC
ATTAGTCCTCAAAAAGCAGGATGCCTTTTTCCTTTCAAAGCCCACACGAGTTCATGACACCATTT
AGTCCTCAAAAAGCAAGATGCCTTTTTCATTTCAAAACCCACACGAGTTGGTGGCCCATTTTATC
CTCAAAGAGCAGGACACCTTTTTCTTTAGTCCTCAAAGAGCACGACCCTTTTTTT
Found at i:1409750 original size:62 final size:62
Alignment explanation
Indices: 1409673--1409866 Score: 230
Period size: 62 Copynumber: 3.1 Consensus size: 62
1409663 ACTCCTTTTT
* * * *
1409673 CTTTAGTCCTCAAAGAGCACGACCCTTTTTTTTTTTCAAAGCCTACACGGGTTTGTGGCACC
1 CTTTAGTCCTCAAAGAGCAAGACCCTTTTTTCTTTTCAAAGCCCACACGAGTTTGTGGCACC
* * * * * *
1409735 TTTTAGTTCTGAAAGAGCATGACCCATTTTTCCTTTT-AAAACCCACACGAGTTTGTGGCACC
1 CTTTAGTCCTCAAAGAGCAAGACCC-TTTTTTCTTTTCAAAGCCCACACGAGTTTGTGGCACC
* * *
1409797 CTTTAGTCCTCAAAGAGCAAGATTCC-TTTTTCTTTTCAATGCCCACACGAGTTGGTGGCACC
1 CTTTAGTCCTCAAAGAGCAAGA-CCCTTTTTTCTTTTCAAAGCCCACACGAGTTTGTGGCACC
*
1409859 CTTCAGTC
1 CTTTAGTC
1409867 TCTTTTCAAA
Statistics
Matches: 110, Mismatches: 19, Indels: 6
0.81 0.14 0.04
Matches are distributed among these distances:
61 9 0.08
62 90 0.82
63 11 0.10
ACGTcount: A:0.23, C:0.27, G:0.17, T:0.34
Consensus pattern (62 bp):
CTTTAGTCCTCAAAGAGCAAGACCCTTTTTTCTTTTCAAAGCCCACACGAGTTTGTGGCACC
Found at i:1409882 original size:40 final size:40
Alignment explanation
Indices: 1409827--1409906 Score: 124
Period size: 40 Copynumber: 2.0 Consensus size: 40
1409817 GATTCCTTTT
* * *
1409827 TCTTTTCAATGCCCACACGAGTTGGTGGCACCCTTCAGTC
1 TCTTTTCAAAGCCCACACAAGTTGGTAGCACCCTTCAGTC
*
1409867 TCTTTTCAAAGCCCACACAAGTTGGTAGCACCCTTTAGTC
1 TCTTTTCAAAGCCCACACAAGTTGGTAGCACCCTTCAGTC
1409907 CTCAAAGAGC
Statistics
Matches: 36, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
40 36 1.00
ACGTcount: A:0.21, C:0.31, G:0.17, T:0.30
Consensus pattern (40 bp):
TCTTTTCAAAGCCCACACAAGTTGGTAGCACCCTTCAGTC
Found at i:1409933 original size:164 final size:164
Alignment explanation
Indices: 1409705--1410018 Score: 425
Period size: 164 Copynumber: 1.9 Consensus size: 164
1409695 CCCTTTTTTT
* ** * * * * * *
1409705 TTTTCAAAGCCTACACGGGTTTGTGGCACCTTTTAGTTCTGAAAGAGCATGACCCATTTTTCCTT
1 TTTTCAAAGCCCACACAAGTTGGTAGCACCCTTTAGTCCTCAAAGAGCAGGACCCATTTTTCCTT
** * * *
1409770 T-TAAAACCCACACGAGTTTGTGGCACCCTTTAGTCCTCAAAGAGCAAGATTCCTTTTTCTTTTC
66 TCT-AAACCCACACGAGTTCATGGCACCATTTAGTCCTCAAAAAGCAAGATTCCTTTTTCATTTC
**
1409834 AATGCCCACACGAGTTGGTGGCACCCTTCAGTCTC
130 AAAACCCACACGAGTTGGTGGCACCCTTCAGTCTC
*
1409869 TTTTCAAAGCCCACACAAGTTGGTAGCACCCTTTAGTCCTCAAAGAGCAGGATGCC-TTTTTCCT
1 TTTTCAAAGCCCACACAAGTTGGTAGCACCCTTTAGTCCTCAAAGAGCAGGA-CCCATTTTTCCT
* *
1409933 TTCTAAGCCCACACGAGTTCATGGCACCATTTAGTCCTTAAAAAGCAAGATTCCTTTTTCATTTC
65 TTCTAAACCCACACGAGTTCATGGCACCATTTAGTCCTCAAAAAGCAAGATTCCTTTTTCATTTC
1409998 AAAACCCACACGAGTTGGTGG
130 AAAACCCACACGAGTTGGTGG
1410019 TCCATTTTGT
Statistics
Matches: 129, Mismatches: 19, Indels: 4
0.85 0.12 0.03
Matches are distributed among these distances:
164 126 0.98
165 3 0.02
ACGTcount: A:0.25, C:0.27, G:0.17, T:0.31
Consensus pattern (164 bp):
TTTTCAAAGCCCACACAAGTTGGTAGCACCCTTTAGTCCTCAAAGAGCAGGACCCATTTTTCCTT
TCTAAACCCACACGAGTTCATGGCACCATTTAGTCCTCAAAAAGCAAGATTCCTTTTTCATTTCA
AAACCCACACGAGTTGGTGGCACCCTTCAGTCTC
Found at i:1409958 original size:102 final size:101
Alignment explanation
Indices: 1409767--1409960 Score: 282
Period size: 102 Copynumber: 1.9 Consensus size: 101
1409757 CCCATTTTTC
* * * * *
1409767 CTTTTAAAACCCACACGAGTTTGTGGCACCCTTTAGTCCTCAAAGAGCAAGATTCCTTTTTCTTT
1 CTTTTAAAACCCACACAAGTTGGTAGCACCCTTTAGTCCTCAAAGAGCAAGATGCCTTTTTCCTT
**
1409832 TCAATGCCCACACGAGTTGGTGGCACCCTTCAGTCT
66 TCAATGCCCACACGAGTTCATGGCACCCTTCAGTCT
* *
1409868 CTTTTCAAAGCCCACACAAGTTGGTAGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTTTCCT
1 CTTTT-AAAACCCACACAAGTTGGTAGCACCCTTTAGTCCTCAAAGAGCAAGATGCCTTTTTCCT
1409933 TTCTAA-GCCCACACGAGTTCATGGCACC
65 TTC-AATGCCCACACGAGTTCATGGCACC
1409961 ATTTAGTCCT
Statistics
Matches: 82, Mismatches: 9, Indels: 3
0.87 0.10 0.03
Matches are distributed among these distances:
101 5 0.06
102 75 0.91
103 2 0.02
ACGTcount: A:0.24, C:0.30, G:0.17, T:0.29
Consensus pattern (101 bp):
CTTTTAAAACCCACACAAGTTGGTAGCACCCTTTAGTCCTCAAAGAGCAAGATGCCTTTTTCCTT
TCAATGCCCACACGAGTTCATGGCACCCTTCAGTCT
Found at i:1409989 original size:62 final size:62
Alignment explanation
Indices: 1409870--1410401 Score: 645
Period size: 62 Copynumber: 8.6 Consensus size: 62
1409860 TTCAGTCTCT
* *
1409870 TTTCAAAGCCCACACAAGTTGGTAGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTTTCC
1 TTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTTTCC
* ** * * * * * *
1409932 TTTCTAAGCCCACACGAGTTCATGGCACCATTTAGTCCTTAAAAAGCAAGATTCCTTTTTCA
1 TTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTTTCC
* * * * ** *
1409994 TTTCAAAACCCACACGAGTTGGTGG-TCCATTTTGTCCTCAAAGAGCAGGACACCTTTTTCT
1 TTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTTTCC
* * * * * **
1410055 TTTCAAAGCCCACACGTGTTGTTGGTACCCTTTAGTCCTCAAAGAGCAAGACGTATTTTTCC
1 TTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTTTCC
* * *
1410117 TTTCAAAGCCCATA-GAAGTTGGTGGCACCCTTTAGTCCTAAAAGAGCAGGATGCCTCTTTCC
1 TTTCAAAGCCCACACG-AGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTTTCC
* * * *
1410179 TTTCAAAGCCCGCACGAGTTAGTGGCACCCTTTAGTCCTCAAAAAACAGGATGCCTTTTTCC
1 TTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTTTCC
* * **
1410241 TTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGTTCTGAAAGAGCAGGATGCCTTTCCCC
1 TTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTTTCC
* * **
1410303 TTTCAAAGCCCACACAAGTTTGTGGCACCCTTTAGTCCTCAAAGAGCAACATGCCTTTTTCC
1 TTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTTTCC
** * *
1410365 TTTCAGCGCCCACACGTGTTGGTGGCACCCTTCAGTC
1 TTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGTC
1410402 TCCTTTCAAA
Statistics
Matches: 394, Mismatches: 73, Indels: 6
0.83 0.15 0.01
Matches are distributed among these distances:
61 51 0.13
62 342 0.87
63 1 0.00
ACGTcount: A:0.25, C:0.28, G:0.18, T:0.29
Consensus pattern (62 bp):
TTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTTTCC
Found at i:1410004 original size:226 final size:225
Alignment explanation
Indices: 1409673--1410091 Score: 536
Period size: 226 Copynumber: 1.9 Consensus size: 225
1409663 ACTCCTTTTT
** * * ** *
1409673 CTTTAGTCCTCAAAGAGCACGACCCTTTTTTTTTTTCAAAGCCTACACGGGTTTGTGGCACCTTT
1 CTTTAGTCCTCAAAGAGCACGACCCTTTTTTCCTTTCAAAGCCCACACGAGTTCATGGCACCATT
* * * * * * *
1409738 TAGTTCTGAAAGAGCATGACCCATTTTTCCTTTTAAAACCCACACGAGTTTGTGGCACCCTTTAG
66 TAGTCCTGAAAAAGCAAGACCCATTTTTCATTTCAAAACCCACACGAGTTGGTGG-ACCATTTAG
** *
1409803 TCCTCAAAGAGCAAGATTCCTTTTTCTTTTCAATGCCCACACGAGTTGGTGGCACCCTTCAGTCT
130 TCCTCAAAGAGCAAGACACCTTTTTCTTTTCAAAGCCCACACGAGTTGGTGGCACCCTTCAGTCT
1409868 CTTTTCAAAGCCCACACAAGTTGGTAGCACC
195 CTTTTCAAAGCCCACACAAGTTGGTAGCACC
* * *
1409899 CTTTAGTCCTCAAAGAGCAGGATGCC-TTTTTCCTTTCTAAGCCCACACGAGTTCATGGCACCAT
1 CTTTAGTCCTCAAAGAGCACGA-CCCTTTTTTCCTTTCAAAGCCCACACGAGTTCATGGCACCAT
* * * *
1409963 TTAGTCCTTAAAAAGCAAGATTCC-TTTTTCATTTCAAAACCCACACGAGTTGGTGGTCCATTTT
65 TTAGTCCTGAAAAAGCAAGA-CCCATTTTTCATTTCAAAACCCACACGAGTTGGTGGACCATTTA
* * * * *
1410027 GTCCTCAAAGAGCAGGACACCTTTTTCTTTTCAAAGCCCACACGTGTTGTTGGTACCCTTTAGTC
129 GTCCTCAAAGAGCAAGACACCTTTTTCTTTTCAAAGCCCACACGAGTTGGTGGCACCCTTCAGTC
1410092 CTCAAAGAGC
Statistics
Matches: 162, Mismatches: 29, Indels: 5
0.83 0.15 0.03
Matches are distributed among these distances:
225 62 0.38
226 96 0.59
227 4 0.02
ACGTcount: A:0.24, C:0.27, G:0.17, T:0.32
Consensus pattern (225 bp):
CTTTAGTCCTCAAAGAGCACGACCCTTTTTTCCTTTCAAAGCCCACACGAGTTCATGGCACCATT
TAGTCCTGAAAAAGCAAGACCCATTTTTCATTTCAAAACCCACACGAGTTGGTGGACCATTTAGT
CCTCAAAGAGCAAGACACCTTTTTCTTTTCAAAGCCCACACGAGTTGGTGGCACCCTTCAGTCTC
TTTTCAAAGCCCACACAAGTTGGTAGCACC
Found at i:1410417 original size:40 final size:40
Alignment explanation
Indices: 1410362--1410441 Score: 115
Period size: 40 Copynumber: 2.0 Consensus size: 40
1410352 CATGCCTTTT
** **
1410362 TCCTTTCAGCGCCCACACGTGTTGGTGGCACCCTTCAGTC
1 TCCTTTCAAAGCCCACACAAGTTGGTGGCACCCTTCAGTC
*
1410402 TCCTTTCAAAGCCCACACAAGTTGGTGGCACCCTTTAGTC
1 TCCTTTCAAAGCCCACACAAGTTGGTGGCACCCTTCAGTC
1410442 CTCAAAGAGC
Statistics
Matches: 35, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
40 35 1.00
ACGTcount: A:0.17, C:0.35, G:0.20, T:0.28
Consensus pattern (40 bp):
TCCTTTCAAAGCCCACACAAGTTGGTGGCACCCTTCAGTC
Found at i:1410435 original size:164 final size:164
Alignment explanation
Indices: 1410238--1410533 Score: 448
Period size: 164 Copynumber: 1.8 Consensus size: 164
1410228 GATGCCTTTT
* * *
1410238 TCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGTTCTGAAAGAGCAGGATGCCTTTCCCC
1 TCCTTTCAAAGCCCACACAAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTCCCC
* * * *
1410303 TTTCAAAGCCCACACAAGTTTGTGGCACCCTTTAGTCCTCAAAGAGCAACATGCCTTTTTCCTTT
66 TTTCAAAGCCAACACAAGTTAGTGACACCCTTTAGTCCTCAAAAAGCAACATGCCTTTTTCCTTT
1410368 CAGCGCCCACACGTGTTGGTGGCACCCTTCAGTC
131 CAGCGCCCACACGTGTTGGTGGCACCCTTCAGTC
**
1410402 TCCTTTCAAAGCCCACACAAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTTTCC
1 TCCTTTCAAAGCCCACACAAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTCCCC
* * * *** *
1410467 TTTCAAAGCCAACACGAGTTAGTGACATCTTTTAGTCCTCAAAAAGCAGGTTGCCTTTTTCGTTT
66 TTTCAAAGCCAACACAAGTTAGTGACACCCTTTAGTCCTCAAAAAGCAACATGCCTTTTTCCTTT
1410532 CA
131 CA
1410534 AACCTACATG
Statistics
Matches: 116, Mismatches: 16, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
164 116 1.00
ACGTcount: A:0.23, C:0.29, G:0.19, T:0.29
Consensus pattern (164 bp):
TCCTTTCAAAGCCCACACAAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTCCCC
TTTCAAAGCCAACACAAGTTAGTGACACCCTTTAGTCCTCAAAAAGCAACATGCCTTTTTCCTTT
CAGCGCCCACACGTGTTGGTGGCACCCTTCAGTC
Found at i:1410503 original size:62 final size:62
Alignment explanation
Indices: 1410402--1410803 Score: 434
Period size: 62 Copynumber: 6.5 Consensus size: 62
1410392 CCCTTCAGTC
* *
1410402 TCCTTTCAAAGCCCACACAAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTT
1 TCCTTTCAAAGCCTACACGAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTT
* * * * * * *
1410464 TCCTTTCAAAGCCAACACGAGTTAGTGACATCTTTTAGTCCTCAAAAAGCAGGTTGCCTTTT
1 TCCTTTCAAAGCCTACACGAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTT
* * * * ** *
1410526 TCGTTTCAAA-CCTACATGGGTTGGTGGC-CTCATTTTTTCCTCAAAGAGTAGGACT-CCTTTT
1 TCCTTTCAAAGCCTACACGAGTTGGTGGCAC-CCTTTAGTCCTCAAAGAGCAGGA-TGCCTTTT
* ** * ** **
1410587 TCTTTTCAAAGCCTACACTTGTTGGCGGCACCCTTTAGTCCTCACTGAGCAGGACCCCTTTT
1 TCCTTTCAAAGCCTACACGAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTT
* * * *
1410649 TCTTTTCAAAGCCTACACGAGTTTGTGGCACCCTTTAGTTCTGAAAGAGCAGGATGCCTTTT
1 TCCTTTCAAAGCCTACACGAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTT
* * * * * *
1410711 TCCTTTCAAAGCCCACACAAGTTTGTGGCACCCTTTAGTCTTCAAAGAGCAAGATGCCCTTT
1 TCCTTTCAAAGCCTACACGAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTT
*
1410773 TCCTTTCAATGTCC-ACACGAGTTGGTGGCAC
1 TCCTTTCAAAG-CCTACACGAGTTGGTGGCAC
1410804 TATTCAGTCT
Statistics
Matches: 280, Mismatches: 54, Indels: 12
0.81 0.16 0.03
Matches are distributed among these distances:
61 45 0.16
62 232 0.83
63 3 0.01
ACGTcount: A:0.23, C:0.27, G:0.19, T:0.32
Consensus pattern (62 bp):
TCCTTTCAAAGCCTACACGAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTT
Found at i:1410551 original size:411 final size:406
Alignment explanation
Indices: 1409994--1431904 Score: 4151
Period size: 411 Copynumber: 52.6 Consensus size: 406
1409984 TCCTTTTTCA
* * * * * ** *
1409994 TTTCAAAACCCACACGAGTTGGTGG-TCCATTTTGTCCTCAAAGAGCAGGACACCTTTTTCTTTT
1 TTTCAAAGCCCACACAAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTTTCATTT
* * * * * ** *
1410058 CAAAGCCCACACGTGTT-GTTGGTACCCTTTAGTCCTCAAAGAGCAAGACGTATTTTTCCTTTCA
66 CAAAGCCCACACGAGTTAG-TGGCACCCTTTAGTCCTCAAAAAGCAGGATGCCTTTTTCGTTTCA
* * * * * *
1410122 AAGCCCATAGAAGTTGGTGGCACCCTTTAGTCCTAAAAGAGCAGGATGCCTCTTTCCTTTCAAAG
130 AA-CCCAT-G-GGTTGGTGGC-CCATTTTGTCCTCAAAGAGCAGGAT-CCTTTTTCTTTTCAAAG
* * * * *
1410187 CCCGCACGAGTTAGTGGCACCCTTTAGTCCTCAAAAAACAGGATGCCTTTTTCCTTTCAAAGCCC
190 CCCACAC-AGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTTTCTTTTCAAAGCCC
**
1410252 ACACGAGTTGGTGGCACCCTTTAGTTCTGAAAGAGCAGGATGCCTTTCCCCTTTCAAAGCCCACA
254 ACACGAGTTGGTGGCACCCTTTAGTTCTGAAAGAGCAGGATGCCTTTTTCCTTTCAAAGCCCACA
* * *
1410317 CAAGTTTGTGGCACCCTTTAGTCCTCAAAGAGCAACATGCCTTTTTCCTTTCAGCGCCCACACGT
319 CAAGTTTGTGGCACCCTTTAGTCCTCAAAGAGCAACATGCCCTTTTCCTTTCAACGCCCACACGA
*
1410382 GTTGGTGGCACCCTTCAGTCTCC
384 GTTGGTGGCACCATTCAGTCTCC
*
1410405 TTTCAAAGCCCACACAAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTTTCCTTT
1 TTTCAAAGCCCACACAAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTTTCATTT
* * * * *
1410470 CAAAGCCAACACGAGTTAGTGACATCTTTTAGTCCTCAAAAAGCAGGTTGCCTTTTTCGTTTCAA
66 CAAAGCCCACACGAGTTAGTGGCACCCTTTAGTCCTCAAAAAGCAGGATGCCTTTTTCGTTTCAA
* *
1410535 ACCTACATGGGTTGGTGGCCTCATTTTTTCCTCAAAGAGTAGGACTCCTTTTTCTTTTCAAAGCC
131 ACC--CATGGGTTGGTGGCC-CATTTTGTCCTCAAAGAGCAGGA-TCCTTTTTCTTTTCAAAGCC
* * * ** ** *
1410600 TACACTTGTTGGCGGCACCCTTTAGTCCTCACTGAGCAGGACCCCTTTTTCTTTTCAAAGCCTAC
192 CACAC-AGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTTTCTTTTCAAAGCCCAC
*
1410665 ACGAGTTTGTGGCACCCTTTAGTTCTGAAAGAGCAGGATGCCTTTTTCCTTTCAAAGCCCACACA
256 ACGAGTTGGTGGCACCCTTTAGTTCTGAAAGAGCAGGATGCCTTTTTCCTTTCAAAGCCCACACA
* * * *
1410730 AGTTTGTGGCACCCTTTAGTCTTCAAAGAGCAAGATGCCCTTTTCCTTTCAATGTCCACACGAGT
321 AGTTTGTGGCACCCTTTAGTCCTCAAAGAGCAACATGCCCTTTTCCTTTCAACGCCCACACGAGT
* *
1410795 TGGTGGCACTATTCAGTCTTC
386 TGGTGGCACCATTCAGTCTCC
1410816 TTTCAAAGCCCACACAAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTTTCATTT
1 TTTCAAAGCCCACACAAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTTTCATTT
* *
1410881 CAAAGCCCACACGAGTTCA-TGGCACCCTTTAGTCCTTAAAAAGCAGGATGCCTTTTTCGTTTAA
66 CAAAGCCCACACGAGTT-AGTGGCACCCTTTAGTCCTCAAAAAGCAGGATGCCTTTTTCGTTT-C
*
1410945 AAACCCGCATGGGTTGGTGGTCCATTTTGTCCTCAAAGAGCAGGGCA-CCTTTTTCTTTTCAAAG
129 AAA-CC-CATGGGTTGGTGGCCCATTTTGTCCTCAAAGAGCA-GG-ATCCTTTTTCTTTTCAAAG
1411009 CCCACACATGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTTTCTTTTCAAAGCCC
190 CCCACACA-GTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTTTCTTTTCAAAGCCC
*
1411074 ACACGAGTTGGTGGCACCTTTTAGTTCTGAAAGAGCAGGATGCCTTTTTCCTTTCAAAGCCCACA
254 ACACGAGTTGGTGGCACCCTTTAGTTCTGAAAGAGCAGGATGCCTTTTTCCTTTCAAAGCCCACA
* ** * ** **
1411139 CAAGTTTGCGGCACCCTTTAGTCTCCTTTCAAAGCCCACACAAG-----TTGGTGGC-A--CCCA
319 CAAGTTTGTGGCACCCTTTAG--TCC--TCAAAGAGCA-ACATGCCCTTTTCCTTTCAACGCCCA
* ** **** ** * ** *
1411196 TTA-GTCTTCAAAAAGCAGGATGCTTTTTTCC
379 -CACGAGTT--GGTGGCACCATTC-AGTCTCC
* * * * * *
1411227 TTTCAAAGCCCACACGAGTTGGTGACACCTTTTAGTCCTCAAAAAGCAGGGTGCCTTTTTCGTTT
1 TTTCAAAGCCCACACAAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTTTCATTT
* * * * * * * *
1411292 CAAA-CCTACTCGGGTTGGTGGC-CTCATTTTGTCCTCAAAGAGTAGGACT-CCTTTTTCTTTAG
66 CAAAGCCCACACGAGTTAGTGGCAC-CCTTTAGTCCTCAAAAAGCAGGA-TGCCTTTTTC----G
* *** ** * * ***
1411354 TCTTCAAAGAGCACGACCCTTTTTTTTTTTCAAAGCCTACACGGGTTTGTGGCACCTTTTAGTTC
125 T-TTC----A--A--ACCC-ATGGGTTGGT---GGCC--CA----TTT-T-G-TCCTCAAAG---
* * *
1411419 TGAAAGAGCATGACCCATTTTTCCTTTT-AAAGCCCACACGAGTTTGTGGCACCCTTTAGTCCTC
165 AG-CAG-G-AT---CC-TTTTT-CTTTTCAAAGCCCACAC-AGTTGGTGGCACCCTTTAGTCCTC
* * *
1411483 AAAGAGCAAGATTCCTTTTTCTTTTCAATGCCCACACGAGTTGGTGGCACCCTTCAGTCTCTTTT
221 AAAGAGCAGGATGCCTTTTTCTTTTCAAAGCCCACACGAGTTGGTGGCA-----C---C-C-TTT
*
1411548 CAAAGCCCACACAAGTTGGTAGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTTTCCTTTCAA
276 -------------AGTT-CT-G-A--------------AAGAGCAGGATGCCTTTTTCCTTTCAA
* * * * * ** * *
1411613 AGCCCACACGAGTTGGTGGCACCTTTTAGTTCTGAAAGAGCAGGATGCCTTTTTCCTTTCAAAGC
311 AGCCCACACAAGTTTGTGGCACCCTTTAGTCCTCAAAGAGCAACATGCCCTTTTCCTTTCAACGC
* * * * *
1411678 CCACACAAGTTTGCGGCACCCTTTAGTCTCC
376 CCACACGAGTTGGTGGCACCATTCAGTCTCC
* * * *
1411709 TTTCAAAGCCCACACAAGTTGGTGGCACCCATTAGTCCTCAAAAAGCAGGATGCTTTTTTCCTTT
1 TTTCAAAGCCCACACAAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTTTCATTT
* * * *
1411774 CAAAGCCCACACGAGTTGGTGACACCTTTTAGTCCTCAAAAAGCAGGGTGCCTTTTTCGTTTCAA
66 CAAAGCCCACACGAGTTAGTGGCACCCTTTAGTCCTCAAAAAGCAGGATGCCTTTTTCGTTTCAA
* * *
1411839 ACCTACTCGGGTTGGTGGCCTCATTTTATCCTCAAAGAGTAGGACTCCTTTTTCTTTAGTCCTCA
131 ACCCA-T-GGGTTGGTGGCC-CATTTTGTCCTCAAAGAGCAGGA-TCCTTTTTC-TT--T--TC-
* * ** ** * * *
1411904 AAGAGCACGACCCTTTTTTTTTTTCAAAGCCTACACGGGTTT-GTGGCACCTTTTAGTTCTGAAA
186 AA-AGC-CCACAC----AGTTGGT----GGC-AC-C--CTTTAGT----CC-TC--------AAA
* * * * * *
1411968 GAGCATGA-CCCATTTTTCCTTTT-AAAACCCACACGAGTTTGTGGCACCCTTTAGTCCTCAAAG
224 GAGCAGGATGCC-TTTTT-CTTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGTTCTGAAAG
* * * * * * *
1412031 AGCAAGATTCCTTTTTCTTTTCAATGCCCACACGAGTTGGTGGCACCCTTCAGTCTCTTTTCAAA
287 AGCAGGATGCCTTTTTCCTTTCAAAGCCCACACAAGTTTGTGGCACCCTTTAGTC-C---TCAAA
** ******* * ** *
1412096 GCCCACACAAGTTGGTAGCACCCTTT--A-GTCCTCA-AAGAGCAGGAT-G--CC-TT---TTTC
348 GAGCA-AC-A--TGCCCTTTTCCTTTCAACG-CC-CACACGAGTTGG-TGGCACCATTCAGTCTC
1412150 C
406 C
* * ** * * * * *
1412151 TTTCTAAGCCCACACGAGTTCATGGCACCATTTAGTCCTTAAAAAGCAAGATTCCTTTTTCATTT
1 TTTCAAAGCCCACACAAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTTTCATTT
* * * * * * ** *
1412216 CAAAACCCACACGAGTTGGTGG-TCCATTTTGTCCTCAAAGAGCAGGACACCTTTTTCTTTTCAA
66 CAAAGCCCACACGAGTTAGTGGCACCCTTTAGTCCTCAAAAAGCAGGATGCCTTTTTCGTTTCAA
* * * * * * *
1412280 AGCCCACACGTGTTGTTGGTACCC-TTTAGTCCTCAAAGAGCAAGA-CGTATTTTTCCTTTCAAA
131 A--CC-CATGGGTTGGTGG--CCCATTTTGTCCTCAAAGAGCAGGATC--CTTTTTCTTTTCAAA
* * * * *
1412343 GCCCATAGAAGTTGGTGGCACCCTTTAGTCCTGAAAGAGCAGGATGCCTCTTTCCTTTCAAAGCC
189 GCCCACA-CAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTTTCTTTTCAAAGCC
* * * * *
1412408 CGCACGAGTTAGTGGCACCCTTTAGTCCTCAAAAAGCAGGATGCCTTTTTCCTTTCAAAGCCCAC
253 CACACGAGTTGGTGGCACCCTTTAGTTCTGAAAGAGCAGGATGCCTTTTTCCTTTCAAAGCCCAC
* * * * ** * *
1412473 ACGAGTTGGTGGCACCCTTTAGTTCTGAAAGAGCAGGATG-CCTTTCCCCTTTCAAAGCCCACAC
318 ACAAGTTTGTGGCACCCTTTAGTCCTCAAAGAGCAACATGCCCTTT-TCCTTTCAACGCCCACAC
* * * *
1412537 AAGTTTGTGGCACCCTTTAG--TCC
382 GAGTTGGTGGCACCATTCAGTCTCC
** * ** * * * **
1412560 --TCAAAGAGCA-ACATGCCTT--T---TTCCTTTCAG-CGCCCACACGTGTTGG-TGGCACCCT
1 TTTCAAAGCCCACACAAG--TTGGTGGCACCCTTT-AGTC-CTCA-AAGAGCAGGAT-G---CCT
* * * * *
1412615 TCAGTCTCCTTTCAAAGCCCACACAAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCT
57 T---TTTCATTTCAAAGCCCACACGAGTTAGTGGCACCCTTTAGTCCTCAAAAAGCAGGATGCCT
* * * * * * * *
1412680 TTTTCCTTTCAAAGCCAACACGAGTTAGTGACATC-TTTTAGTCCTCAAAAAGCAGGTTGCCTTT
119 TTTTCGTTTCAAA-CC--CATGGGTTGGTGGC-CCATTTT-GTCCTCAAAGAGCAGGAT-CCTTT
* * ** * ** *
1412744 TTCGTTTCAAA-CCTACATGGGTTGGTGGC-CTCATTTTTTCCTCAAAGAGTAGGACT-CCTTTT
178 TTCTTTTCAAAGCCCACA-CAGTTGGTGGCAC-CCTTTAGTCCTCAAAGAGCAGGA-TGCCTTTT
* ** * * * ** ** *
1412806 TCTTTTCAAAGCCTACACTTGTTGGCGGCACCCTTTAGTCCTCACTGAGCAGGACCCCTTTTTCT
240 TCTTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGTTCTGAAAGAGCAGGATGCCTTTTTCC
* * * * ** *
1412871 TTTCAAAGCCTACACGAGTTTGTGGCACCCTTTAGTTCTGAAAGAGCAGGATGCCTTTTTCCTTT
305 TTTCAAAGCCCACACAAGTTTGTGGCACCCTTTAGTCCTCAAAGAGCAACATGCCCTTTTCCTTT
* * * * *
1412936 CAAAGCCCACACAAGTTTGTGGCACCCTTTAG--T-C
370 CAACGCCCACACGAGTTGGTGGCACCATTCAGTCTCC
* * ******* * * **
1412970 -TTCAAAG---A-GCAAGATGCCCTTTTCCTTTCAATGTCCAC-ACGAGTTGG-TGGCACTATTC
1 TTTCAAAGCCCACACAAGTTGGTGGCACCCTTT--A-GTCCTCAAAGAGCAGGAT-GC-C--TT-
* * *
1413028 AGTCTTC-TTTCAAAGCCCACACAAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTT
58 --T-TTCATTTCAAAGCCCACACGAGTTAGTGGCACCCTTTAGTCCTCAAAAAGCAGGATGCCTT
* * * ** * * * *
1413092 TTTCATTTCAAAGCCCACACGAGTTCATGGCACCCTTTAGTCCTTAAAAAGCAGGATGCCTTTTT
120 TTTCGTTTCAAA--CC-CATGGGTTGGTGGC-CCATTTTGTCCTCAAAGAGCAGGAT-CCTTTTT
* * * * ** * * * ***
1413157 CGTTTAAAAACCCGCATGGGTTGGTGG-TCCATTTTGTCCTCAAAGAGCAGGGCACCTTTTTCTT
180 CTTTTCAAAGCCCACA-CAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTTTCTT
* * * * ** * *
1413221 TTCAAAGCCCACAC-ATGTTGTTGGCACCCTTTAGTCCTCAAAGAGCAAGATGTATTTCTCTTTT
244 TTCAAAGCCCACACGA-GTTGGTGGCACCCTTTAGTTCTGAAAGAGCAGGATGCCTTTTTCCTTT
* * ** * *
1413285 CAAAGCCCACAGAAG-TTGATGGCACCCTTTAGTCCCCAAAGAGCAGGATGCCTTTTTCCCTTCA
308 CAAAGCCCACACAAGTTTG-TGGCACCCTTTAGTCCTCAAAGAGCAACATGCCCTTTTCCTTTCA
* * * * *
1413349 AAGCCCGCACGAGTTTGTGAAACCCTTCAGCCCTCAAAAATCAGGATGCCTTTTTCC
372 ACGCCCACACGAG-TTG-G-------T-GGCAC-C---ATTCA-G-T--C----TCC
* * *
1413406 TTTCAAAGCCCACACTAGTTAGTGGCACCCTTTAGTCCTCAAAGAGTAGGATGCC---TT--TTT
1 TTTCAAAGCCCACACAAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTTTCATTT
* * * * * *
1413466 --------------G--AGTGGTACCCTTTAGTCCTGAAAGAGCAAGACGCCTTTTTCCTTTCAA
66 CAAAGCCCACACGAGTTAGTGGCACCCTTTAGTCCTCAAAAAGCAGGATGCCTTTTTCGTTTCAA
*** * * ** * * * **
1413515 AGCCCACACAGTCGGTGGCACCCTTCAGTCCTTAAGGAGTAGGA-CACTTTTTTCCATTCAAAGC
131 A-CCCA-TGGGTTGGTGGC-CCATTTTGTCCTCAAAGAGCAGGATC-C-TTTTTCTTTTCAAAGC
* * * *
1413579 CCACACGAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAAGACGTCTTTTCCTTTTCAAAGCCCA
191 CCACAC-AGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTTTCTTTTCAAAGCCCA
* * * * *
1413644 CACAAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGAACGCCTTTTTCCTTTCAAAGCCCACAC
255 CACGAGTTGGTGGCACCCTTTAGTTCTGAAAGAGCAGGATGCCTTTTTCCTTTCAAAGCCCACAC
* * * ** * * *
1413709 GAGTTTATGGCACCCTTTAGTCCTTAAAGAGCAGGATGCCATTTTCCTTTCAATGCCCATACGAG
320 AAGTTTGTGGCACCCTTTAGTCCTCAAAGAGCAACATGCCCTTTTCCTTTCAACGCCCACACGAG
* *
1413774 TTGGTGGCACCCTTCGGTCTCC
385 TTGGTGGCACCATTCAGTCTCC
* * *
1413796 TTTCAAAGCCCACACTAGTTGGTGGCACCCTTCT-GTCCCCAAAGAGCAGGATGCCTTTTTCCTT
1 TTTCAAAGCCCACACAAGTTGGTGGCACCCTT-TAGTCCTCAAAGAGCAGGATGCCTTTTTCATT
* * * ** * * *
1413860 TAAAAGCCCACACGAGTTGGTGGCACCTTTTAGTCCTTGAAGAGCAAGATGCCTTTTTCCTTTCA
65 TCAAAGCCCACACGAGTTAGTGGCACCCTTTAGTCCTCAAAAAGCAGGATGCCTTTTTCGTTTCA
**** * * *
1413925 AAGCCCACACAATTGGTGGCACCCTTTAGTCCTCAAAGAGCTGGATGCCTTTTTCTTTTCAAAGC
130 AA-CCCA-TGGGTTGGTGGC-CCATTTTGTCCTCAAAGAGCAGGAT-CCTTTTTCTTTTCAAAGC
* * * * * * *
1413990 CCACACGACTTTGTGGGACCCTTTAGTCCTCAAAGAGGAAGATGCCTTTTTC-ATTCAACGCCCA
191 CCACAC-AGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTTTCTTTTCAAAGCCCA
*
1414054 CACGAGTTGGGGGCA-CC---A--T-T-------CA-G-T--C----TCCTTTCAAAGCCCACAC
255 CACGAGTTGGTGGCACCCTTTAGTTCTGAAAGAGCAGGATGCCTTTTTCCTTTCAAAGCCCACAC
* * * ** ** * *
1414097 AAGTTGGTGGCAGCCATTAGTCCTCAAAGAGCAGGATGCTTTTTTCCTTTCAAAGCCCACACAAG
320 AAGTTTGTGGCACCCTTTAGTCCTCAAAGAGCAACATGCCCTTTTCCTTTCAACGCCCACACGAG
* * *
1414162 TTGGTGACACCTTTTAG--TCC
385 TTGGTGGCACCATTCAGTCTCC
** * * * * * ***
1414182 --TCAAA----A-AGC-AG--GGT-GC-CTTTTTCGT-TTCAAACCTA-CACGGGTTG-GTGGCC
1 TTTCAAAGCCCACA-CAAGTTGGTGGCACCCTTTAGTCCTCAAA--GAGCA--GGATGCCT-TTT
* * * * * * **
1414232 TCATTT---TGTCCTCA-AAGAG-TAG-GACTCCTTTTTCTTTTGTCCTCAAAGAGCAGGACCCC
60 TCATTTCAAAG-CC-CACACGAGTTAGTGGCACC-----CTTTAGTCCTCAAAAAGCAGGATGCC
*** * * * * * * *
1414291 TTTTAATTTTCAAAGCCTACACGAGTTTGTGGCACCCTTTAGTTCTGAAAGAGCAGGATGCCTTT
118 TTTTTCGTTTCAAA-CC--CATGGGTTGGTGGC-CCATTTTGTCCTCAAAGAGCAGGAT-CCTTT
* * * *
1414356 TTCCTTTCAAAGCCCACACGAGTTTGTGGCACCCTTTAGTCCTCAAAGAGCAAGATGCCCTTTTC
178 TTCTTTTCAAAGCCCACAC-AGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTTTC
** ** *
1414421 CATTCAATTCCCACACGAGTTGGTGGCA-AC---A--T-T-------CA-G-T--C----TCCTT
242 TTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGTTCTGAAAGAGCAGGATGCCTTTTTCCTT
* ** * **
1414464 TCAAAGCCCACACAAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTTTGATTTCA
307 TCAAAGCCCACACAAGTTTGTGGCACCCTTTAGTCCTCAAAGAGCAACATGCCCTTTTCCTTTCA
* * ** *
1414529 AAGCTCACACGAGTTCATGGCACCCCTTAGTCCTTAAAAAACAGGATGCCTTTTTCG
372 ACGCCCACACGAGTTGGTGGCA--CC--A----TT------CA-G-T--C----TCC
* * *** * ** *
1414586 TTTAAAAACCCACATGTGTTGGTAGTGCA---TTTTGTCCTCAAAGAGCAGGACACCTTTTTCTT
1 TTTCAAAGCCCACACAAGTTGGT-G-GCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTTTCAT
* * * ** *
1414648 TTCAAAGCCCACAC-ATGTT-GTTGGCACCCTTTAGTCCTCAAAGAGCAAGACGTATTTTTCTTT
64 TTCAAAGCCCACACGA-GTTAG-TGGCACCCTTTAGTCCTCAAAAAGCAGGATGCCTTTTTCGTT
* * * * * * *
1414711 TCAAAGCCCACAGAAGTTGATGGCACCCTTTAGTCTTCAAAGAGCAGGATGCCTTTTTCCTTTCA
127 TCAAA-CCCA-TG-GGTTGGTGGC-CCATTTTGTCCTCAAAGAGCAGGAT-CCTTTTTCTTTTCA
* * * ** *
1414776 AAGCCCAAACGAGTTGGTGGCACCCTTCAGTCCTCAAAAAAAAGGATGCCTTTTTCCTTTCAAAG
187 AAGCCCACAC-AGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTTTCTTTTCAAAG
* * * *
1414841 CCCACACGAGTTAGTGGCACCCTTTAGTCCTCAAAAAGCAGGATGCC---TT--TTT----G---
251 CCCACACGAGTTGGTGGCACCCTTTAGTTCTGAAAGAGCAGGATGCCTTTTTCCTTTCAAAGCCC
** * * * * *
1414894 -----A----GTGGCACCCTTTAGTCCGGAAAGAGGAAGACG-CCTGTTTCCTTTCAAAGGCCAC
316 ACACAAGTTTGTGGCACCCTTTAGTCCTCAAAGAGCAACATGCCCT-TTTCCTTTCAACGCCCAC
*
1414949 AC-AGTTGGTGGCACCATTTAATCCTCAAAGAGAAAGACACCTTTTTCC
380 ACGAGTTGGTGGCACC-----AT--TC--------AG-------TCTCC
* ** * * *
1414997 TTTCAAAGCCTACATGAGTTGCTGGCACCCATTAGTCCTCGAAGAGCAGGATGCCTTTTTTTC-T
1 TTTCAAAGCCCACACAAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCC--TTTTTCAT
* * * * *
1415061 TTCAAAGCCCACACGAGTTGGTGGCACCTTTTAGTCCTCAAAGAGTAGG-TCGCCTTTTTCTTTT
64 TTCAAAGCCCACACGAGTTAGTGGCACCCTTTAGTCCTCAAAAAGCAGGAT-GCCTTTTTCGTTT
* ** * * * *
1415125 CAAAGCTCATACATGTTGGTGGCACCCTTTAGTCCTCAAAAATCAGGATGCCTTTTTGC-TTTCA
128 CAAA-CCCAT--GGGTTGGTGGC-CCATTTTGTCCTCAAAGAGCAGGAT-CCTTTTT-CTTTTCA
* * *
1415189 AAGCCAACACTAGTTAGTGGCACCCTTTAGTCCTCAAAGAGTAGGATGCC----T-TTTT-----
187 AAGCCCACAC-AGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTTTCTTTTCAAAG
* * * * **
1415244 -------GAG-TGGT---ACCCTTTAGTCCTCAAAGACCAAGACACCTTTTTCCTTTCAAAGCCC
251 CCCACACGAGTTGGTGGCACCCTTTAGTTCTGAAAGAGCAGGATGCCTTTTTCCTTTCAAAGCCC
* ** * * * * ** * *
1415298 ACA-TAGTCGGTGGTACCCTTCAGTCCTTAAAGAGTAGGACA--CTTTTTTCCTTTCAAAGCTCA
316 ACACAAGTTTGTGGCACCCTTTAGTCCTCAAAGAGCA--ACATGCCCTTTTCCTTTCAACGCCCA
* *
1415360 CACGAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGACGCCTTTTTCT
379 CACGAGTTGGTGGCA-CC---A-T--T-------C---A-G----TCTCC
* *
1415410 TTTCAAAGCCCACACAAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAAGATGCCTTTTTCCTTT
1 TTTCAAAGCCCACACAAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTTTCATTT
* * * * * * *
1415475 CAAAGCCCACACGAGTTTGTGGCACCCCTTAGTCCTTAAAGAGTAGGATGCCATTTTCCTTTCAA
66 CAAAGCCCACACGAGTTAGTGGCACCCTTTAGTCCTCAAAAAGCAGGATGCCTTTTTCGTTTCAA
* * * * *
1415540 TGCCCACACGAGTTGGTGG--CA-----TCCT------TC-GG-T-C----TCCTTTCAAAGCCC
131 --ACC-CATGGGTTGGTGGCCCATTTTGTCCTCAAAGAGCAGGATCCTTTTTCTTTTCAAAGCCC
* * * *
1415585 ATACTAGTTGGTGGCACCCTTCT-GTCCCCAAAGAGCAGGATGCCTTTTTCCTTTAAAAGCCCAC
193 ACAC-AGTTGGTGGCACCCTT-TAGTCCTCAAAGAGCAGGATGCCTTTTTCTTTTCAAAGCCCAC
* * *
1415649 ACGAGTTGGTGTCACCTTTTAG-TCGTTG-AAGAGCACGATGCCTTTTTCCTTTCAAAGCCCACA
256 ACGAGTTGGTGGCACCCTTTAGTTC--TGAAAGAGCAGGATGCCTTTTTCCTTTCAAAGCCCACA
* * **
1415712 C-AGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGACA--CCTTTTTCCTTTCAAAACCCACAC
319 CAAGTTTGTGGCACCCTTTAGTCCTCAAAGAGCA--ACATGCCCTTTTCCTTTCAACGCCCACAC
1415774 GAGTTGGTGGCACCCTTTAGTCCCTAAAGAGCAGGATGCCTTTTTCC
382 GAGTTGGTGGCA-CC---A-T---T------CA-G-T--C----TCC
** * * * * * ** *
1415821 TTTCAAAGCCCACACGGGTAGGTGGCTCCCTTTAGCCCTTAAAAAGCCA-GACACCTTTTTCCTT
1 TTTCAAAGCCCACACAAGTTGGTGGCACCCTTTAGTCCTCAAAGAG-CAGGATGCCTTTTTCATT
* ** * * * * * * *
1415885 TCAAAGGCCACACGAGTCGGTGGCTCTCTTTTGTCCTCAAAGAGTAGGATGCTTTTTTCCTTTCA
65 TCAAAGCCCACACGAGTTAGTGGCACCCTTTAGTCCTCAAAAAGCAGGATGCCTTTTTCGTTTCA
* * * * * ** *
1415950 AAGCCCACACGAGTTGGAGGCACCCTTTAGTCCTCAAAGAGTGGGATGCCTTTTTCATTTCAAAG
130 AA--CC-CATGGGTTGGTGGC-CCATTTTGTCCTCAAAGAGCAGGAT-CCTTTTTCTTTTCAAAG
* * ** **
1416015 CCCACACGAGTTGGTGGCACCCTTTAGTCCTCAAAGAGGAGGATGTCTTTTTC-CATCAAAAGGG
190 CCCACAC-AGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTTTCTTTTC-AAAGCC
* ** ** * * *
1416079 CAAACGAGTTGGTGGCATTCTTTAGCCCTCAATGAGCAAGATG-CTTCTTT-CTTTCAAAGCCCA
253 CACACGAGTTGGTGGCACCCTTTAGTTCTGAAAGAGCAGGATGCCTT-TTTCCTTTCAAAGCCCA
* * * ** * * ** * **
1416142 AACGAGTTGGTGGCATTCTTTTGTCCTCAAAGAGCAAGACACCTTTTTCCTTTCAAATCCCACAC
317 CACAAGTTTGTGGCACCCTTTAGTCCTCAAAGAGCAACATGCCCTTTTCCTTTCAACGCCCACAC
* * * *
1416207 GAGTTGGGGGACCCTTTACTCCTTAAAGAGCCAGAAGCCTTTTTCT
382 GAGTTGGTGG---C---AC-CATT-------C---AG----TCTCC
* *** ** * * * *
1416253 TTTCAAAGCCCGCATGGGTTGGTCACACCATTTTGTCCTCAAAGAG-AGTGATACCTTTTTCTTT
1 TTTCAAAGCCCACACAAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAG-GATGCCTTTTTCATT
* * * * * * *
1416317 TCAAAGCCCACACAAGTTGGTGGCACCCTTTACTCCTTAAAGAGCAGGATGCTTTTTTCTTTTCA
65 TCAAAGCCCACACGAGTTAGTGGCACCCTTTAGTCCTCAAAAAGCAGGATGCCTTTTTCGTTTCA
* * * * *
1416382 AAGCCCACACGGGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAAGA-CATGTTTTTCCTTTT-AA
130 AA--CC-CATGGGTTGGTGGC-CCATTTTGTCCTCAAAGAGCAGGATC--CTTTTT-CTTTTCAA
* * * * *
1416445 AGCCCACACAAGTTGGTGGCACCTTTTGGTTCTCAAAGAGCAAGATGCCTTTTTCCTTTCAAAGC
188 AGCCCACAC-AGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTTTCTTTTCAAAGC
* * * * * *
1416510 CCGCACGAGTTGGTGGCACCCTTTAGTCCTCAAAAAGCAGAAAGCCTTTTTCCTTTCAAAGCCCA
252 CCACACGAGTTGGTGGCACCCTTTAGTTCTGAAAGAGCAGGATGCCTTTTTCCTTTCAAAGCCCA
* * * * * * * * * **
1416575 CATC-A-TTAGCGACAACCTTTAGTCCTCAAAAAGTAAGACG-CCTTTTCCCTTTCAAAGCCTGC
317 CA-CAAGTTTGTGGCACCCTTTAGTCCTCAAAGAGCAACATGCCCTTTT-CCTTTCAACGCCCAC
* *
1416637 AC-AGTTGGTGGCACATTTTAGTCCTCAAAGAGCCGGATTGCCTTTTTCT
380 ACGAGTTGGTGGCAC----CA-T--TC----A----G--T--C----TCC
* * *** * * *
1416686 TTTCAGAGCCCAGAGGGGTTGGTGGCACCCTTTACTCCTCAAAGAGGAGGATGCCTTTTTC--CT
1 TTTCAAAGCCCACACAAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTTTCATTT
* * * * * *
1416749 CAAAGGCCATACGAGTTTGTGGCACCCTTTAGTCCTTAAAAAGCAGGATACCATTTTCGTTTCAA
66 CAAAGCCCACACGAGTTAGTGGCACCCTTTAGTCCTCAAAAAGCAGGATGCCTTTTTCGTTTC-A
* * * *
1416814 AACCTACACGGGTTGGTGGTCCATTTTGTCCTCAAAGAGTAGGACACCTTTTTCTTTTCAAA-CC
130 AACC--CATGGGTTGGTGGCCCATTTTGTCCTCAAAGAGCAGGA-TCCTTTTTCTTTTCAAAGCC
* * * * ** *
1416878 ACACACGTGTTGTTGGCACCCTTTAGTCCTCAAAGAGCAAGACGTATTTTTCCTTTCAAAGCCCA
192 -CACAC-AGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTTTCTTTTCAAAGCCCA
* * * *
1416943 CA-GAAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGGCTTTTTCCTTTCAAAGCCCGCA
255 CACG-AGTTGGTGGCACCCTTTAGTTCTGAAAGAGCAGGATGCCTTTTTCCTTTCAAAGCCCACA
* * * * * ** * ** **
1417007 CTAGTTGGTGGTA-CCTTCAGTCCTCAAAAAGCAGGACGCATTTTTCCTTTCAAATCCCACACGA
319 CAAGTTTGTGGCACCCTTTAGTCCTCAAAGAGCAACATGCCCTTTTCCTTTCAACGCCCACACGA
* *
1417071 GTTGGTGGCACCCTTTAG--TCC
384 GTTGGTGGCACCATTCAGTCTCC
*** * *** * *
1417092 --TCAAAGAGTAGGATGCCTTTTTGAGTGGCACCCTTTAGTCCTCAAAAAGCAAGATGCCTTTTT
1 TTTCAAAGCCCA-CA---CAAGTTG-GTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTTT
* * * * ** *
1417155 CCTTTCAAAGCCCACAC-AATT-GTTGGCACCCTTTAGTCCTCAAAGAGCAAGACACCTTTTTCC
61 CATTTCAAAGCCCACACGAGTTAG-TGGCACCCTTTAGTCCTCAAAAAGCAGGATGCCTTTTTCG
* * * * * * *
1417218 TTTCAAAGCCTACACGAGTTGCTGGCACCCTTTAGTCCTCAAATAGCAGGATGGCTTTTTCTTTT
125 TTTCAAA-CC--CATGGGTTGGTGGC-CCATTTTGTCCTCAAAGAGCAGGAT-CCTTTTTCTTTT
*
1417283 CAAAGCCCACACAAGTTGGTGGCACCCTTTAGTCTTCAAAGAGCTA-GATGCCTTTTTCTTTTCA
185 CAAAGCCCACAC-AGTTGGTGGCACCCTTTAGTCCTCAAAGAGC-AGGATGCCTTTTTCTTTTCA
* * * * * * * *
1417347 AAGCACACACGAGTTTGTGGGACCTTTTAGTCCTCAAAGAGCAAGATGCCTTTTTCCTTTCAACG
248 AAGCCCACACGAGTTGGTGGCACCCTTTAGTTCTGAAAGAGCAGGATGCCTTTTTCCTTTCAAAG
* * * ** *******
1417412 CCCACACGAGTTGGTGGCACCCTTCAGTCTCCTTTCAAAGCCCACACAAATTGGTGGCACCCTTT
313 CCCACACAAGTTTGTGGCACCCTTTAG--TCC--TCAAAGAGCA-AC--A-TGCCCTTTTCCTTT
* *** * * *
1417477 --A-GTCCTCA-AAGAG--CAAGACACC-TT---TTTCA
370 CAACG-CC-CACACGAGTTGGTGGCACCATTCAGTCTCC
* ** * * * * *
1417506 TTTCAAAGCCTACAGGAGTTGTTGGCACCCTTTAGTCCTCGAAGAGTAGGACAG-CTTTTTCCTT
1 TTTCAAAGCCCACACAAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGA-TGCCTTTTTCATT
* * * *
1417570 TCAAAGCCCACACGAGTTGGTGGCACCCTTTAGTGCTCAAAGAGCAGGATGCCTTTTTCATTTCA
65 TCAAAGCCCACACGAGTTAGTGGCACCCTTTAGTCCTCAAAAAGCAGGATGCCTTTTTCGTTTCA
* ** * * * *
1417635 ACTCCCGCATAAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAG
130 A--ACC-CATGGGTTGGTGGC-CCATTTTGTCCTCAAAGAGCAGGA-TCCTTTTTCTTTTCAAAG
* * * *
1417700 CCCACACGAGTTTGTGGCACCCTTTAGTCCTCAAAGAGCAAGATGCCTTTTTCCTTTCAACGCCC
190 CCCACAC-AGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTTTCTTTTCAAAGCCC
*
1417765 ACACGACTTGGTGGCA-CC-----TT-T-------CA-G-T--C----TCCTTTCAAAGCCCACA
254 ACACGAGTTGGTGGCACCCTTTAGTTCTGAAAGAGCAGGATGCCTTTTTCCTTTCAAAGCCCACA
* * ** * **
1417808 CAAGTTGGTGGCAACCTTTAGTCCTCAAAGAGCAGGATGCCTTTTTCCTTTCAA-AACCACACGA
319 CAAGTTTGTGGCACCCTTTAGTCCTCAAAGAGCAACATGCCCTTTTCCTTTCAACGCCCACACGA
* * *
1417872 GTTGGTGACACCTTTTAG--TCC
384 GTTGGTGGCACCATTCAGTCTCC
** * * * *
1417893 --TCAAA----A-AGC-AG--GGT-GC-CTTTTTCGT-TTCAAACCTA-CACGGGTTGGTGGCAC
1 TTTCAAAGCCCACA-CAAGTTGGTGGCACCCTTTAGTCCTCAAA--GAGCA---G--GAT-GC-C
** * *** * *** * * *
1417944 CCTTT-AGTCCTCAAAGAGTAGGATGCCTTTTTGAGTGGTACCCTTTAGTCCTCAAAGAGCAAGA
56 TTTTTCA-T-TTCAAAGCCCA-CA---CGAGTT-AGTGGCACCCTTTAGTCCTCAAAAAGCAGGA
* * * * * **
1418008 CGCCTTTTTCCTTTCAACGCCCACACGAGTTGGTGG--CA------CC-C----TTCA-G-T-C-
114 TGCCTTTTTCGTTTCAA--ACC-CATGGGTTGGTGGCCCATTTTGTCCTCAAAGAGCAGGATCCT
* **
1418056 ---TCCTTTCAAAGCCCACACAAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGTTTTTT
176 TTTTCTTTTCAAAGCCCACAC-AGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTT
* * * * * * * * *
1418118 TCCTTTCAAAGCCCACATGAGTTGGTGACACCTTTTAGTCCTCAAACAGCAGGGTGCCTTTTTCG
240 TCTTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGTTCTGAAAGAGCAGGATGCCTTTTTCC
* ** * * * * *
1418183 TTTCAAA-CCTACACGGGTTGGTGGC-CTCATTTTGTCCTCAAAGAGTAGGAC-T--CCTTTTTC
305 TTTCAAAGCCCACACAAGTTTGTGGCAC-CCTTTAGTCCTCAAAGAGCA--ACATGCCCTTTTCC
* *** * * **
1418243 TTT--A-GTCCTCA-AAGAG--CACGAC-CCCTT---T-TTT
367 TTTCAACG-CC-CACACGAGTTGGTGGCACCATTCAGTCTCC
* *** * * * * * *
1418274 TTTCAAAGCCTACATGGGTTTGTGGCACCTTTTAGTTCTGAAAGAGCATGA--CCTATTTTTCCT
1 TTTCAAAGCCCACACAAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCC--TTTTTCAT
* * * * * *
1418337 TTCAAAGCACACACGAGTTTGTGGCACCCTTTAGTCCTCAAAGAGCAAGATTCCTTTTTCTTTTC
64 TTCAAAGCCCACACGAGTTAGTGGCACCCTTTAGTCCTCAAAAAGCAGGATGCCTTTTTCGTTTC
* * * * * * * * * *
1418402 AACGCCCACACGAGTTGGTGGCACCCTTTAGCCCTCAAAGAACAAGA-CGTATTTCTCTTTTTAA
129 AA--ACC-CATGGGTTGGTGGC-CCATTTTGTCCTCAAAGAGCAGGATCCT-TTT-TCTTTTCAA
* * * * *
1418466 AGCCCACAGAAGTTGATGGCACCCTTTAGTCCCCAAAGAGCAGGATGCCTTTTTCCTTTCAAAGT
188 AGCCCACA-CAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTTTCTTTTCAAAGC
* * * * * * * * *
1418531 CCGCACGAGTTGGTGGCACCCTTCAGTCCTCAAAAATCAAGATGCCTTTTTGCTTTCAAAGCCAA
252 CCACACGAGTTGGTGGCACCCTTTAGTTCTGAAAGAGCAGGATGCCTTTTTCCTTTCAAAGCCCA
* * * * ** *
1418596 CACTAGTTAGTGGCACCCTTTAGTCTTCAAAGAGTAGGATGCCTTTTTGAGTGGTACCCTTT--A
317 CACAAGTTTGTGGCACCCTTTAGTCCTCAAAGAGCAACATGCC--CTT---T--T--CCTTTCAA
* *** * * *
1418659 -GTCCTCA-AAGAG--CAAGACGCC-TT---TTTCC
373 CG-CC-CACACGAGTTGGTGGCACCATTCAGTCTCC
* * *
1418687 TTTCAATGCCCACACGAGTTGGTGGCACCCTTCAGTCTCCTTTCAAAGCCCACACAAGTTGGTGG
1 TTTCAAAGCCCACACAAGTTGGTGG-------CA--C-CCTTT---AG---TC-C-------T--
* * * * *
1418752 CACCCTTTAGTCCTCAAAGAGCAGGATGCTTTTTTCCTTTCAAAGCCCACATGAGTTGGTGACAC
40 CA--------------AAGAGCAGGATGCCTTTTTCATTTCAAAGCCCACACGAGTTAGTGGCAC
* * *
1418817 CTTTTAGTCCTCAAAAAGCAGGGTGCCTTTTTCGTTTCAAACCTACACGGGTTGGTGGCCTCATT
91 CCTTTAGTCCTCAAAAAGCAGGATGCCTTTTTCGTTTCAAACC--CATGGGTTGGTGGCC-CATT
* * * *
1418882 TTGTCCTCAAAGAGTAGGACTCCTTTTTCTTTAGTCCTCAAAGAGCACGACCCCTTTTTTATTTC
153 TTGTCCTCAAAGAGCAGGA-TCCTTTTTC-TT--T--TC-AA-AGC-CCA-CAC------AGTT-
*** * * * * ** * * *
1418947 AAAGCCTACACGGGGTTGTGGCACCCTTTAGTTCTGAAAG-AGCATGACCTATTTTTCCTTTCAA
201 GGTGGC-AC-C---CTT-TAG--TCCTCAA------AGAGCAGGATG-CC--TTTTTCTTTTCAA
* ** * * * * *
1419011 AGCCCACACGAGTTTGTGTTACCCTTTAGTCCTCAAAGAGCAAGATTCCTTTTTCCTTTCAACGC
249 AGCCCACACGAGTTGGTGGCACCCTTTAGTTCTGAAAGAGCAGGATGCCTTTTTCCTTTCAAAGC
* **
1419076 CCACAC--GTGTTGCTGGCACCCTTCAGTCTCCTTTCAAAGCCCACACAAGTTGGTGGCACCCTT
314 CCACACAAGT-TTG-TGGCACCCTTTAG--TCC--TCAAAGAGCA-AC-A-----T-G--CCCTT
* * * * *
1419139 TAGTCC-TT-AA-----AAACCAG--GAT-G--CC-TT---TTTCT
363 T--TCCTTTCAACGCCCACACGAGTTGGTGGCACCATTCAGTCTCC
* * *** * * * * ** *
1419169 TTTAAAAACCCACATGGGTTGGTGG-TCCATTTTGTCCTCAAAGAGCAAGACACCTTTTTCTTTT
1 TTTCAAAGCCCACACAAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTTTCATTT
* * * * ** *
1419233 CAAAGCCCACACGTGTT-GCTGGTACCCTTTAGTCCTCAAAAAGCAAGACGTATTTTTCCTTTCA
66 CAAAGCCCACACGAGTTAG-TGGCACCCTTTAGTCCTCAAAAAGCAGGATGCCTTTTTCGTTTCA
* * * * *
1419297 AAGCCCATAGAAGTTGGTGGCACCCTTTTGTCCTCAAAAAGTAGGATGCCTTTTTCCTTTCAAAG
130 AA-CCCAT-G-GGTTGGTGGC-CCATTTTGTCCTCAAAGAGCAGGAT-CCTTTTTCTTTTCAAAG
*
1419362 CCCGA-ACGAGTTGGTGGCACCCTTTAGTCCTCAAAAAGCAGGATGCCTTTTT-TCTTTCAAAGC
190 CCC-ACAC-AGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTTTCT-TTTCAAAGC
* *
1419425 CCACACGAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCC---TT--TTT----G----
252 CCACACGAGTTGGTGGCACCCTTTAGTTCTGAAAGAGCAGGATGCCTTTTTCCTTTCAAAGCCCA
* * * ** * *
1419477 ----A----GTGGCACCCGTTACTCCTCAAAGAGCAAGACACCTTTTTCCTTTCAAAGCCCACAC
317 CACAAGTTTGTGGCACCCTTTAGTCCTCAAAGAGCAACATGCCCTTTTCCTTTCAACGCCCACAC
*
1419534 -AGTTGGTGGAACCCTTTAGTCCTCTAAGAGCAAGACACCTTTCTCC
382 GAGTTGGTGGCA-CC---A----T-T-----C-AG-------TCTCC
* * * * * * * * ** *
1419580 TTTCGAAGCCTACCCCAGTTGCTAGCACCCTTTAGTCCTCGAAGAGTAGGACACCTTTTTCCTTT
1 TTTCAAAGCCCACACAAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTTTCATTT
* * * *
1419645 CAAAGCCCACACGAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCGGGATGCCTTTTTCCTTTCAA
66 CAAAGCCCACACGAGTTAGTGGCACCCTTTAGTCCTCAAAAAGCAGGATGCCTTTTTCGTTTCAA
* * * * * * * *
1419710 AGCCCACACGAGTTTGTGGCACCCTTTAGTCCTCAAAGAGCAAGATGCCTTTTTCCTTTCAACGC
131 A--CC-CATGGGTTGGTGGC-CCATTTTGTCCTCAAAGAGCAGGAT-CCTTTTTCTTTTCAAAGC
* *
1419775 CCACACGAGTTGATGGAACCCTTTAGTCTCCTTTTAAAACCCACACAAGTTGGTGGCACCCTTTA
191 CCACAC-AGTTGGTGGCACCCTTTAG--TCC---T--------CA-AA-------G-A-------
* * * * *
1419840 GTCCTCAAAGAGCAGGATGCCTTTTTCCTTTCTAAGCCCACACGAGTTCGTGGCACCATTTAGTC
226 -----------GCAGGATGCCTTTTTCTTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGTT
* * * * * * * * * * *
1419905 CTTAAAAAGTAGGATTCCTTTTTCATTTCAAAACCCACACGAGTTGGTGG-TCCATTTTGTCCTC
280 CTGAAAGAGCAGGATGCCTTTTTCCTTTCAAAGCCCACACAAGTTTGTGGCACCCTTTAGTCCTC
* * * * * * * * * *
1419969 CAATAGCAGGACA--CCTTTTTCTTTTCAAAGCCCACACGTGTTGTTGGTACCCTTTAG--TCC
345 AAAGAGCA--ACATGCCCTTTTCCTTTCAACGCCCACACGAGTTGGTGGCACCATTCAGTCTCC
** * * *** * * ** **
1420029 --TCAAAGAGCA-AGACGTAT--T--TTTCCTTTCAATGCC-CATAGAAGTTGG-TGGCACCCTT
1 TTTCAAAGCCCACACAAGT-TGGTGGCACCCTTT-AGT-CCTCAAAG-AGCAGGAT-GC-CTTTT
* ** *** * * * *
1420085 T-AGTCCTCAAAGAGCAGCATGCCTTTTTAAGTGGCACCCTTTTGTCCTCAAAGAGCAAGACGCC
60 TCA-T-TTCAAAGCCCA-CA---CGAGTT-AGTGGCACCCTTTAGTCCTCAAAAAGCAGGATGCC
* * *** * * * *
1420149 TTTTTCCTTTCGAAGCCCACACAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAAGACACCTTTT
118 TTTTTCGTTTC-AAACCCA-TGGGTTGGTGGC-CCATTTTGTCCTCAAAGAGCAGGA-TCCTTTT
* * * * * * * * ** *
1420214 TCATTTCAAAGCCTACACGAGTTGCTGGCACCGTTTAGTCGTCGAAGAGTACGACACCTTTTTCC
179 TCTTTTCAAAGCCCACAC-AGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTTTCT
* * * *
1420279 TTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGACGCCTTTTTTCTTT
243 TTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGTTCTGAAAGAGCAGGATGCC-TTTTTCCTT
* *** * *
1420344 TCAAAGCCCACACAAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCGGGACGCCTTTTTCCTTTCA
307 TCAAAGCCCACACAAGTTTGTGGCACCCTTTAGTCCTCAAAGAGCAACATGCCCTTTTCCTTTCA
* * * *
1420409 AAGCCCACACGAGTTTGTGGCACCCTTTA-T-TCC
372 ACGCCCACACGAGTTGGTGGCACCATTCAGTCTCC
* * * **** * * *
1420442 --TCAAAG---A-GCAAGATGCCT-TTTTCCTTTCAACG-CC-CACACGAGTTGATGGCA-CCCT
1 TTTCAAAGCCCACACAAGTTG-GTGGCACCCTTT--A-GTCCTCA-AAGAG--CA-GG-ATGCCT
* * * * *
1420497 TTAGTCTCCTTTCAAAACCCACACAAGTTGGTGGCACCCTTTAGTCCTCAAAAAGCAGCATGCCT
57 TT--T-TCATTTCAAAGCCCACACGAGTTAGTGGCACCCTTTAGTCCTCAAAAAGCAGGATGCCT
* * * * * * * * *
1420562 TTTTCCTTTCTAAGCCCACACGAGTTCGTGGCAACATTTAGTCCTTAAAAAGCAGGATTCCTTTT
119 TTTTCGTTTC-AA-ACC-CATGGGTTGGTGGC-CCATTTTGTCCTCAAAGAGCAGGA-TCCTTTT
* * * * * * **
1420627 TCATTTCAAAACCCACACGAGTTGGTGG-TCCGTTTTGTCCTCAAAGTGCAGGACACCTTTTTCT
179 TCTTTTCAAAGCCCACAC-AGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTTTCT
* * * * * * * **
1420691 TTTCAAAGCCCACACGTGTTGTTGGCACCCTTTAGTCCTCAGAGAGCAAGACGTATTTTTCCTTT
243 TTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGTTCTGAAAGAGCAGGATGCCTTTTTCCTTT
* * * * * *
1420756 CAAAGCCCATAGAAGTTGGTGGCACCCTTTAGTTCTCAAAGAG-AAGGATGCCTTTTTCCTTTCA
308 CAAAGCCCACACAAGTTTGTGGCACCCTTTAGTCCTCAAAGAGCAA-CATGCCCTTTTCCTTTCA
* *
1420820 AAGCCCGCACGAGTTGGTGGCACCCTTTAGTCCTCAAAAAGCAGGATGCCTTTTTCC
372 ACGCCCACACGAGTTGGTGGCA-CC---A-T--T-------CA-G-T--C----TCC
* *
1420877 TTTCAAAGCCCACACGAA-TCGGTGGCACCCTTTAGTCCTCAAAGAGCAGCATGCC---TT--TT
1 TTTCAAAGCCCACAC-AAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTTTCATT
* * * *
1420936 T-------------A---AGTGGCACCCTTTAGTCCTCAAAGAGCAAGACGCCTTTTTCCTTTCG
65 TCAAAGCCCACACGAGTTAGTGGCACCCTTTAGTCCTCAAAAAGCAGGATGCCTTTTTCGTTTC-
* *** * * * * *
1420985 AACCCCACACAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAAGACACCTTTTTCATTTCAAAGC
129 AAACCCA-TGGGTTGGTGGC-CCATTTTGTCCTCAAAGAGCAGGA-TCCTTTTTCTTTTCAAAGC
* * * * * ** * *
1421050 CTACACGAGTTGCTGGCACCCTTTAGTCGTCGAAGAGTAGGACACCTTTCTCCTTTCAAAGCCCA
191 CCACAC-AGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTTTCTTTTCAAAGCCCA
* * ** *
1421115 CACGAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGCCGCCTTTTTCTTTTCAAAGCCCACAC
255 CACGAGTTGGTGGCACCCTTTAGTTCTGAAAGAGCAGGATGCCTTTTTCCTTTCAAAGCCCACAC
* * * ** * * *
1421180 AAGTTGGTGGCACCCTTTAGTCCTCAAAAATCAGGATGCCTTTTTCCTTTCAAAGCCCACACAAG
320 AAGTTTGTGGCACCCTTTAGTCCTCAAAGAGCAACATGCCCTTTTCCTTTCAACGCCCACACGAG
* * *
1421245 TTTGTGGCACCCTTTAG--TCC
385 TTGGTGGCACCATTCAGTCTCC
* * ***** * * * **
1421265 -TT-AAAG---A-GCAAGAT-GTCTTTTTCCTTTCAG-CGCCCACACGTGTTGG-TGGCACCCTT
1 TTTCAAAGCCCACACAAGTTGGT-GGCACCCTTT-AGTC-CTCA-AAGAGCAGGAT-G---CCTT
* * * * * * * *
1421321 CAGTCTCCTTTCAAAGCCCACACAAGTTGGTGGCACCCTTCAGTCCTCAAAGATCTGGATGCCTT
58 ---TTTCATTTCAAAGCCCACACGAGTTAGTGGCACCCTTTAGTCCTCAAAAAGCAGGATGCCTT
* * * * * * * *
1421386 TCTCCTTTCAAAGCCAACACGAGTTGGTGACATC-TTTTAGTCCTCAAAAAGCAGGTTGCCTTTT
120 TTTCGTTTCAAA-CC--CATGGGTTGGTGGC-CCATTTT-GTCCTCAAAGAGCAGGAT-CCTTTT
* * * * ** * * *
1421450 TCGTTTCAAA-CCTACACGGGTTGGTGGC-CTCATTTTTTCCTCAAAGAGTAGTATTCCTTTTTC
179 TCTTTTCAAAGCCCACAC-AGTTGGTGGCAC-CCTTTAGTCCTCAAAGAGCAGGATGCCTTTTTC
* * *
1421513 TTTTCAAAGCCTACACGAGTTTGTGGCACCCTTTAGTTCTGAAAGAGCAGGATGCCTTTTTCTTT
242 TTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGTTCTGAAAGAGCAGGATGCCTTTTTCCTT
* * *
1421578 TCAAAGCCCACACGAGTTTGTGACACCCTTTAGTCCTCAAAGAGCAAGATGCCCTTTTCCTTTCA
307 TCAAAGCCCACACAAGTTTGTGGCACCCTTTAGTCCTCAAAGAGCAACATGCCCTTTTCCTTTCA
*
1421643 ATGCCCACACGAGTTGGTGGCACCATTCAGTCTCC
372 ACGCCCACACGAGTTGGTGGCACCATTCAGTCTCC
*
1421678 TTTCAAAGCCCACACAAGTTGGTGGCACCCTTTAGTCCTCAAAAAGCAGGATGCCTTTTTCATTT
1 TTTCAAAGCCCACACAAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTTTCATTT
* * * *
1421743 CAAAGCTCACACGAGTTCA-TGGCACCCTTTAGTCCTTAAAATGCAGGATGCCTTTTTCGTTTAA
66 CAAAGCCCACACGAGTT-AGTGGCACCCTTTAGTCCTCAAAAAGCAGGATGCCTTTTTCGTTT-C
* * *
1421807 AAACCCACATTGGTTGGTGGTCCATTTTGTCCTCAAAGAGCAGGACACCTTTTTCTTTTCAAAGC
129 AAA-CC-CATGGGTTGGTGGCCCATTTTGTCCTCAAAGAGCAGGA-TCCTTTTTCTTTTCAAAGC
* * * * **
1421872 CCGCACATGTTGTTGGCACCCTTTAGTCCTCAAAGAGCAAGACGTATTTTTCTTTTCAAAGCCCA
191 CCACACA-GTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTTTCTTTTCAAAGCCCA
* * * * * * *
1421937 CA-GAAGTTGATGGGACCCTTTAGTCCTCAAATAGCAGGATGCCTTTTTCCTTTCGAAGCCCGCA
255 CACG-AGTTGGTGGCACCCTTTAGTTCTGAAAGAGCAGGATGCCTTTTTCCTTTCAAAGCCCACA
* * * * ** * *
1422001 CGAGTTGGTGGCACCCTTCAGTCCTCAAAAAGCAGGATGCCTTTTTCCTTTCAAAGCCCACACGA
319 CAAGTTTGTGGCACCCTTTAGTCCTCAAAGAGCAACATGCCCTTTTCCTTTCAACGCCCACACGA
* * *
1422066 GTTAGTGGCACCCTTTAG--TCC
384 GTTGGTGGCACCATTCAGTCTCC
** *** * * * *
1422087 --TCAAAGAGCAGCATGCCTTTTTAAGTGGCACCCTTCAGTCCTCAAAGAGCAAGACGCCTTTTT
1 TTTCAAAGCCCA-CA---CAAGTT-GGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTTT
* * * * * ** *
1422150 CCTTTCGAAGCCCACAC-AGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAAGACACCTTTTTCAT
61 CATTTCAAAGCCCACACGAGTTAGTGGCACCCTTTAGTCCTCAAAAAGCAGGATGCCTTTTTCGT
* * * * * * * * * *
1422214 TTCAAAGCCTACACGAGTTGCTGGCACCCTTTAGTCGTCGAAGAGTAGGACACCTTTTTCCTTTC
126 TTCAAA-CC--CATGGGTTGGTGGC-CCATTTTGTCCTCAAAGAGCAGGA-TCCTTTTTCTTTTC
* **
1422279 AAAGCCCACACGAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAAGCCGCCTTTTTCTTTTCAAA
186 AAAGCCCACAC-AGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTTTCTTTTCAAA
* * * * *
1422344 GCCCACACAAGTTGGTGGCACCCTTTAGTCCTCAAAAATCAGGATGCCTTTTTCCTTTCAAAGCC
250 GCCCACACGAGTTGGTGGCACCCTTTAGTTCTGAAAGAGCAGGATGCCTTTTTCCTTTCAAAGCC
* * * * *
1422409 CACACAAGTTTGTGGCACCCTTTAGTCCTTAAAGAGCAAGATGTCTTTTTCCTTTCAGCGCCCAC
315 CACACAAGTTTGTGGCACCCTTTAGTCCTCAAAGAGCAACATGCCCTTTTCCTTTCAACGCCCAC
* *
1422474 ACGTGTTGGTGGCACCCTTCAGTCTCC
380 ACGAGTTGGTGGCACCATTCAGTCTCC
* * *
1422501 TTTCAAAGCCCACACAAGTTGGTGGCATCCTTTAGTCCTCAATA-ATCAGGATGCCTTTTTCCTT
1 TTTCAAAGCCCACACAAGTTGGTGGCACCCTTTAGTCCTCAA-AGAGCAGGATGCCTTTTTCATT
* * * ** * * *
1422565 TCAAAGCCCACACAAGTTTGTGGCACCCTTTAGTCCTTAAAGTGCAAGATGTCTTTTTCCTTTCA
65 TCAAAGCCCACACGAGTTAGTGGCACCCTTTAGTCCTCAAAAAGCAGGATGCCTTTTTCGTTTCA
** * * ** *
1422630 GCGCCCACACGTGTTGGTGG--CA------CC-C----TTCA-G-T-C----TCCTTTCAAAGCC
130 --AACC-CATGGGTTGGTGGCCCATTTTGTCCTCAAAGAGCAGGATCCTTTTTCTTTTCAAAGCC
* * * *
1422675 CACACAAGTTGGTGGCACCCTTTAGTCCTTAAAGAGCAGGATGCCTTTCTCCTTTCAAAGCCAAC
192 CACAC-AGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTTTCTTTTCAAAGCCCAC
* * * * * * * * * *
1422740 ACGAGTTGGTGACATCTTTTAGTCCTCAAAAAGCAGGTTGCCTTTTTCGTTTCAAA-CCTACACG
256 ACGAGTTGGTGGCACCCTTTAGTTCTGAAAGAGCAGGATGCCTTTTTCCTTTCAAAGCCCACACA
* * * ** * * * * *
1422804 GGTTGGTGGC-CTCATTTTTTCCTCAAAGAGTAGGAC-T-CCTTTTTCTTTTCAAAGCCTACACG
321 AGTTTGTGGCAC-CCTTTAGTCCTCAAAGAGCA--ACATGCCCTTTTCCTTTCAACGCCCACACG
* *
1422866 AGTTTGTGGCACCCTTTAGTTCTGAAGGAGTAGGATGCCTTTTTCT
383 AGTTGGTGGCA-CC---A-TTC---------A-G-T--C----TCC
* * ** * * * *
1422912 TTTCAAAGCCCACACGAGTTTGTTACACTCTTTAGTCCTCAAAGAGCAAGATGCCCTTTTCCTTT
1 TTTCAAAGCCCACACAAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTTTCATTT
* * * * *
1422977 CAATGCCCACA-GAGTTGGTGGCACCATTCAGTCTCCTTTCAAAGCCCACA-CAAGTTGGTGGCA
66 CAAAGCCCACACGAGTTAGTGGCACCCTTTAG--TCC--TCAAA----A-AGC-AG--GAT-GC-
** * * ** ** *
1423040 CCCTTTAGTCCTCAAAAAGCA-GGATGCCTTTTTCATTTAAAAGCTCACACGAGTTCATGGCACC
117 CTTTTTCGT-TTC-AAACCCATGG--G-----TT--GGT----G-GC-C-C-A--T--T------
* * * * * ** * *
1423104 CTTTATTCCTTAAA-ATGCAGGATGCCTTTTTCGTTTAAAAACCCACATTGGTTGGTGG-TCCAT
153 -TTG--TCCTCAAAGA-GCAGGAT-CCTTTTTCTTTTCAAAGCCCACA-CAGTTGGTGGCACCCT
* * ** * *
1423167 TTTGTCCTGAAAGAGCAGGACACCTTTTTCTTTTCAAAGCCCGCAC-ATGTTGTTGGCACCCTTT
212 TTAGTCCTCAAAGAGCAGGATGCCTTTTTCTTTTCAAAGCCCACACGA-GTTGGTGGCACCCTTT
* * * * ** * * *
1423231 AGTCCTCAAAGAGCAAGACGTATTTTTCTTTTCAAAGCCCACAGAAG-TTGATGGGACCCTTTAG
276 AGTTCTGAAAGAGCAGGATGCCTTTTTCCTTTCAAAGCCCACACAAGTTTG-TGGCACCCTTTAG
* ** * *
1423295 TCCTCAAATAGCAGGATGCCTTTTTCCTTTCGAA-GCCCGCACGAGTTGGTGGCACCCTTCAGTC
340 TCCTCAAAGAGCAACATGCCCTTTTCCTTTC-AACGCCCACACGAGTTGGTGGCA--C--CA-T-
1423359 CTCAAAAAGCAGGATGCCTTTTTCC
398 -T-------CA-G-T--C----TCC
* * * *
1423384 TTTCAAAGCCCACACGAGTTAGTGGCACCCTTCAGTCCTCAAAAAGCAGGATGCC---TT--TTT
1 TTTCAAAGCCCACACAAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTTTCATTT
** * * *
1423444 --------------G--AGTGGCACCCTTTAGTCCGGAAAGAGCAAGATGCCTTTTTCCTTTCAA
66 CAAAGCCCACACGAGTTAGTGGCACCCTTTAGTCCTCAAAAAGCAGGATGCCTTTTTCGTTTCAA
*** * ** * * *
1423493 AGCCCACACAGTTGGTGGCACCCTTTAATCCTCAAAGAGCAAGA-CGTATTTTTCCTTTCAAAGC
131 A-CCCA-TGGGTTGGTGGC-CCATTTTGTCCTCAAAGAGCAGGATC--CTTTTTCTTTTCAAAGC
* * * * * *
1423557 CCATAGAAGTTGGTGGCACCCTTTAGTTCTCAAAGAGAAGGATGCCTTTTTCCTTTCAAAGCCCG
191 CCACA-CAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTTTCTTTTCAAAGCCCA
* * * *
1423622 CACGAGTTGGTGGCACTCTTTAGTCCTCAAAAAGCAGGATGCCTTTTTCCTTTCAAAGCCCACAC
255 CACGAGTTGGTGGCACCCTTTAGTTCTGAAAGAGCAGGATGCCTTTTTCCTTTCAAAGCCCACAC
* * * ** ** *
1423687 GAA-TTGGTGGCACCCTTTAGTCCTCAAAGAGCAGCATGCCTTTTTAAGTGGCACCCTTTAGTCC
320 -AAGTTTGTGGCACCCTTTAGTCCTCAAAGAGCAACATGCCCTTTT-CCTTTCA-AC----G-CC
* ** * * * *
1423751 TCA-AAGAG-CAG-GCCGCC-TT---TTTCT
377 -CACACGAGTTGGTGGCACCATTCAGTCTCC
* * * *
1423775 TTTCAAATCCCACACAAGTTGGTGGCATCCTTTAGTCCTCAATA-ATCAGGATGCCTTTTTCCTT
1 TTTCAAAGCCCACACAAGTTGGTGGCACCCTTTAGTCCTCAA-AGAGCAGGATGCCTTTTTCATT
* * * ** * * *
1423839 TCAAAGCCCACACAAGTTTGTGGCACCCTTTAGTCCTTAAAGTGCAAGATGTCTTTTTCCTTTCA
65 TCAAAGCCCACACGAGTTAGTGGCACCCTTTAGTCCTCAAAAAGCAGGATGCCTTTTTCGTTTCA
** * * ** *
1423904 GCGCCCACACGTGTTGGTGG--CA------CC-C----TTCA-G-T-C----TCCTTTCAAAGCC
130 --AACC-CATGGGTTGGTGGCCCATTTTGTCCTCAAAGAGCAGGATCCTTTTTCTTTTCAAAGCC
* * * *
1423949 CACACAAGTTGGTGGCACCCTTTAGTCCTTAAAGAGCAGGATGCCTTTCTCCTTTCAAAGCCAAC
192 CACAC-AGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTTTCTTTTCAAAGCCCAC
* * * * * * * * * *
1424014 ACGAGTTGGTGACATCTTTTAGTCCTCAAAAAGCAGGTTGCCTTTTTCGTTTCAAA-CCTACACG
256 ACGAGTTGGTGGCACCCTTTAGTTCTGAAAGAGCAGGATGCCTTTTTCCTTTCAAAGCCCACACA
* * * ** * * * * *
1424078 GGTTGGTGGC-CTCATTTTTTCCTCAAAGAGTAGGAC-T-CCTTTTTCTTTTCAAAGCCTACACG
321 AGTTTGTGGCAC-CCTTTAGTCCTCAAAGAGCA--ACATGCCCTTTTCCTTTCAACGCCCACACG
* * *
1424140 AGTTTGTGGCACCCTTTAATTCTGAAAGAGCAGGACGCCTTTTTCT
383 AGTTGGTGGCA-CC----A-T-T-------C---A-G----TCTCC
* * * * * *
1424186 TTTCAAAGCCCACACGAGTTTGTGACACCCTTTAGTCCTCAAAGAGCAAGATGCCCTTTTCCTTT
1 TTTCAAAGCCCACACAAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTTTCATTT
* * *
1424251 CAATGCCCACACGAGTTGGTGGCACCATTCAGTCTCCTTTCAAAGCCCACACAAGTTGGTGGCAC
66 CAAAGCCCACACGAGTTAGTGG-------CA--C-CCTTT---AG---TC-C-------T--CA-
* * *** * * * * *
1424316 CCTTTAGTCCTCAAATAGCAGGATGCCTTTTTCATTTCAAAGCTCACACG-AGTTCATG-GCACC
104 ------------AAA-AGCAGGATGCCTTTTTCGTTTCAAA-CCCATGGGTTGGT--GGCCCA-T
* * * * * * ** * *
1424379 CTTTAGTCCTTAAA-ATGCAGGATGCCTTTTTCGTTTAAAAACCCACATTGGTTGGTGG-TCCAT
152 TTTG--TCCTCAAAGA-GCAGGAT-CCTTTTTCTTTTCAAAGCCCACA-CAGTTGGTGGCACCCT
* * ** * *
1424442 TTTGTCTTCAAAGAGCAGGACACCTTTTTCTTTTCAAAGCCCGCAC-ATGTTGTTGGCACCCTTT
212 TTAGTCCTCAAAGAGCAGGATGCCTTTTTCTTTTCAAAGCCCACACGA-GTTGGTGGCACCCTTT
* * * * ** * * *
1424506 AGTCCTCAAAGAGCAAGACGTATTTTTCTTTTCAAAGCCCACAGAAG-TTGATGGGACCCTTTAG
276 AGTTCTGAAAGAGCAGGATGCCTTTTTCCTTTCAAAGCCCACACAAGTTTG-TGGCACCCTTTAG
* ** * * *
1424570 TCCTCAAATAGCAGGATGCCTTTTTCCTTTCGAA-GCCCGCACGAGTTGGTGGCACCCTTCAG--
340 TCCTCAAAGAGCAACATGCCCTTTTCCTTTC-AACGCCCACACGAGTTGGTGGCACCATTCAGTC
1424632 TCC
404 TCC
* *
1424635 --TC--A----A-A-AAGTAGGAT-G---CCTTT-TTCCTTTCAAAGCCCA-CACGAGTTAGTGG
1 TTTCAAAGCCCACACAAGTTGG-TGGCACCCTTTAGTCC--TCAAAG---AGCA-G-G--A-T-G
* * ** *** *
1424684 CACCTTTT-AGTCCTCAAAGAGCAGCATGCCTTTTTAAGTGGCACCCTTTAGTCCTCAAAGAGCA
54 C-CTTTTTCA-T-TTCAAAGCCCA-CA---CGAGTT-AGTGGCACCCTTTAGTCCTCAAAAAGCA
* * * * *** * * *
1424748 AGACG-CTTTTTCCTTTCGAAGCCCACACAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAAGAC
111 GGATGCCTTTTTCGTTTC-AAACCCA-TGGGTTGGTGGC-CCATTTTGTCCTCAAAGAGCAGGA-
* * * * * * * * **
1424812 ACCTTTTTCATTTCAAAGCCTACACGAGTTGCTGGCACCCTTTAGTCGTCGAAGAGTAAGACACC
172 TCCTTTTTCTTTTCAAAGCCCACAC-AGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCC
* * * **
1424877 TTTCTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGTTCTAAAAGAGCAGGCCGCCTTT
236 TTTTTCTTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGTTCTGAAAGAGCAGGATGCCTTT
* * * * ** *
1424942 TTCTTTTCAAAGCCCACACAAGTTGGTGGCACCCTTTAGTCCTCAAAAATCAGGATGCCTTTTTC
301 TTCCTTTCAAAGCCCACACAAGTTTGTGGCACCCTTTAGTCCTCAAAGAGCAACATGCCCTTTTC
* * * * *
1425007 CTTTCAAAGCCCACACAAGTTTGTGGCACCCTTTAG--TCC
366 CTTTCAACGCCCACACGAGTTGGTGGCACCATTCAGTCTCC
* * ***** * * * **
1425046 -TT-AAAG---A-GCAAGAT-GTCTTTTTCCTTTCAG-CGCCCACACGTGTTGG-TGGCACCCTT
1 TTTCAAAGCCCACACAAGTTGGT-GGCACCCTTT-AGTC-CTCA-AAGAGCAGGAT-G---CCTT
* * * * * * *
1425102 CAGTCTCCTTTCAAAGCCCACACAAGTTGGTGGCACGCTTCAGTCCTCAAAGAGCAGGATGCCTT
58 ---TTTCATTTCAAAGCCCACACGAGTTAGTGGCACCCTTTAGTCCTCAAAAAGCAGGATGCCTT
* * * * * * * *
1425167 TCTCCTTTCAAAGCCAACACGAGTTGGTGACATC-TTTTAGTCCTCAAAAAGCAGGTTGCCTTTT
120 TTTCGTTTCAAA-CC--CATGGGTTGGTGGC-CCATTTT-GTCCTCAAAGAGCAGGAT-CCTTTT
* * * * ** *
1425231 TCGTTTCAAA-CCTACACGGGTTGGTGGC-CTCATTTTTTCCTCAAAGAGTAGGACT-CCTTTTT
179 TCTTTTCAAAGCCCACAC-AGTTGGTGGCAC-CCTTTAGTCCTCAAAGAGCAGGA-TGCCTTTTT
* * * * *
1425293 CTTTTCAAAGCCTACACGAGTTTGTGGCACCCTTTAATTCTGAAAGAGCAGGACGCCTTTTTCTT
241 CTTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGTTCTGAAAGAGCAGGATGCCTTTTTCCT
* * *
1425358 TTCAAAGCCCACACGAGTTTGTGACACCCTTTAGTCCTCAAAGAGCAAGATGCCCTTTTCCTTTC
306 TTCAAAGCCCACACAAGTTTGTGGCACCCTTTAGTCCTCAAAGAGCAACATGCCCTTTTCCTTTC
*
1425423 AATGCCCACACGAGTTGGTGGCACCATTCAGTCTCC
371 AACGCCCACACGAGTTGGTGGCACCATTCAGTCTCC
*
1425459 TTTCAAAGCCCACACAAGTTGGTGGCACCCTTTAGTCCTCAAATAGCAGGATGCCTTTTTCATTT
1 TTTCAAAGCCCACACAAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTTTCATTT
* * * *
1425524 CAAAGCTCACACGAGTTCA-TGGCACCCTTTAGTCCTTAAAATGCAGGATGCCTTTTTCGTTTAA
66 CAAAGCCCACACGAGTT-AGTGGCACCCTTTAGTCCTCAAAAAGCAGGATGCCTTTTTCGTTT-C
* * * *
1425588 AAACCCACATTGGTTGGTGGTCCATTTTGTCTTCAAAGAGCAGGACACCTTTTTCTTTTCAAAGC
129 AAA-CC-CATGGGTTGGTGGCCCATTTTGTCCTCAAAGAGCAGGA-TCCTTTTTCTTTTCAAAGC
* * * * **
1425653 CCGCACATGTTGTTGGCACCCTTTAGTCCTCAAAGAGCAAGACGTATTTTTCTTTTCAAAGCCCA
191 CCACACA-GTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTTTCTTTTCAAAGCCCA
* * * * * * *
1425718 CA-GAAGTTGATGGGACCCTTTAGTCCTCAAATAGCAGGATGCCTTTTTCCTTTCGAAGCCCGCA
255 CACG-AGTTGGTGGCACCCTTTAGTTCTGAAAGAGCAGGATGCCTTTTTCCTTTCAAAGCCCACA
* * * * * ** * *
1425782 CGAGTTGGTGGCACCCTTCAGTCCTCAAAAAGTAGGATGCCTTTTTCCTTTCAAAGCCCACACGA
319 CAAGTTTGTGGCACCCTTTAGTCCTCAAAGAGCAACATGCCCTTTTCCTTTCAACGCCCACACGA
* * *
1425847 GTTAGTGGCACCCTTTAG--TCC
384 GTTGGTGGCACCATTCAGTCTCC
** *** * * *
1425868 --TCAAAGAGCAGCATGCCTTTTTAAGTGGCACCCTTTAGTCCTCAAAGAGCAAGACG-CTTTTT
1 TTTCAAAGCCCA-CA---CAAGTT-GGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTTT
* * * * * ** *
1425930 CCTTTCGAAGCCCACAC-AGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAAGACACCTTTTTCAT
61 CATTTCAAAGCCCACACGAGTTAGTGGCACCCTTTAGTCCTCAAAAAGCAGGATGCCTTTTTCGT
* * * * * * * * * * * *
1425994 TTCAAAGCCTACACGAGTTGCTGGCACCCTTTAGTCGTCGAAGAGTAAGACACCTTTCTCCTTTC
126 TTCAAA-CC--CATGGGTTGGTGGC-CCATTTTGTCCTCAAAGAGCAGGA-TCCTTTTTCTTTTC
* * **
1426059 AAAGCCCACACGAGTTGGTGGCACCCTTTAGTTCTAAAAGAGCAGGCCGCCTTTTTCTTTTCAAA
186 AAAGCCCACAC-AGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTTTCTTTTCAAA
* * * * *
1426124 GCCCACACAAGTTGGTGGCACCCTTTAGTCCTCAAAAATCAGGATGCCTTTTTCCTTTCAAAGCC
250 GCCCACACGAGTTGGTGGCACCCTTTAGTTCTGAAAGAGCAGGATGCCTTTTTCCTTTCAAAGCC
* * * * * *
1426189 CGCACAAGTTTGTGGCACCCTTTAGTCCTTAAAGAGCAAGATGTCTTTTTCCTTTCAGCGCCCAC
315 CACACAAGTTTGTGGCACCCTTTAGTCCTCAAAGAGCAACATGCCCTTTTCCTTTCAACGCCCAC
* *
1426254 ACGTGTTGGTGGCACCCTTCAGTCTCC
380 ACGAGTTGGTGGCACCATTCAGTCTCC
* * * *
1426281 TTTCAAAGCCCACACAAGTTGGTGGCACGCTTCAGTCCTCAAAGAGCAGGATGCCTTTCTCCTTT
1 TTTCAAAGCCCACACAAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTTTCATTT
* * * * * * *
1426346 CAAAGCCAACACGAGTTGGTGACATCTTTTAGTCCTCAAAAAGCTGGTTGCCTTTTTCGTTTCAA
66 CAAAGCCCACACGAGTTAGTGGCACCCTTTAGTCCTCAAAAAGCAGGATGCCTTTTTCGTTTCAA
* * *
1426411 ACCTACACGGGTTGGTGGCCTCATTTTTTCCTCAAAGAGTAGGACTCCTTTTTCTTTTCAAAGCC
131 ACC--CATGGGTTGGTGGCC-CATTTTGTCCTCAAAGAGCAGGA-TCCTTTTTCTTTTCAAAGCC
* * * * * *
1426476 TACACGAGTTTGTGGCACCCTTTAATTCTGAAAGAGCAGGACGCCTTTTTCTTTTCAAAGCCCAC
192 CACAC-AGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTTTCTTTTCAAAGCCCAC
* * * * * * * *
1426541 ACGAGTTTGTGACACCCTTTAGTCCTCAAAGAGCAAGATGCCCTTTTCCTTTCAATGCCCACACG
256 ACGAGTTGGTGGCACCCTTTAGTTCTGAAAGAGCAGGATGCCTTTTTCCTTTCAAAGCCCACACA
* * * ** *******
1426606 AGTTGGTGGCACCATTCAGTCTCCTTTCAAAGCCCACACAAGTTGGTGGCACCCTTT--A-GTCC
321 AGTTTGTGGCACCCTTTAG--TCC--TCAAAGAGCA-AC-A--TGCCCTTTTCCTTTCAACG-CC
** ** * *
1426668 TCA-AATAGCAGGAT-G--CC-TT---TTTCA
377 -CACACGAGTTGG-TGGCACCATTCAGTCTCC
* * ** * *
1426692 TTTCAAAGCTCACACGAGTTCATGGCACCCTTTAGTCCTTAAA-ATGCAGGATGCCTTTTTCGTT
1 TTTCAAAGCCCACACAAGTTGGTGGCACCCTTTAGTCCTCAAAGA-GCAGGATGCCTTTTTCATT
* * * * * * * * * ** *
1426756 TAAAAACCCACATTG-GTTGGTGG-TCCATTTTGTCTTCAAAGAGCAGGACACCTTTTTCTTTTC
65 TCAAAGCCCACA-CGAGTTAGTGGCACCCTTTAGTCCTCAAAAAGCAGGATGCCTTTTTCGTTTC
*** * * * * *
1426819 AAAGCCCGCACATGTTGTTGGCACCCTTTAGTCCTCAAAGAGCAAGA-CGTATTTTTCTTTTCAA
129 AAA--CC-CATGGGTTGGTGGC-CCATTTTGTCCTCAAAGAGCAGGATC--CTTTTTCTTTTCAA
* * * * * *
1426883 AGCCCACAGAAGTTGATGGGACCCTTTAGTCCTCAAATAGCAGGATGCCTTTTTCCTTTCGAAGC
188 AGCCCACA-CAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTTTCTTTTCAAAGC
* * * * * *
1426948 CCGCACGAGTTGGTGGCACCCTTCAGTCCTCAAAAAGTAGGATGCCTTTTTCCTTTCAAAGCCCA
252 CCACACGAGTTGGTGGCACCCTTTAGTTCTGAAAGAGCAGGATGCCTTTTTCCTTTCAAAGCCCA
* * * * ** ** ***
1427013 CACGAGTTAGTGGCACCCTTTAGTCCTCAAAGAGCAGCATGCCTTTTTAAGTGGC-AC-CCTTTA
317 CACAAGTTTGTGGCACCCTTTAGTCCTCAAAGAGCAACATGCCCTTTT-CCTTTCAACGCCCACA
** **** ** ** ** *
1427076 -GTCCTCAAAGAGCAAGACGCTTTTTCC
381 CG-AGTTGGTG-GCACCATTCAGTCTCC
* * **
1427103 TTTCGAAGCCCACAC-AGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAAGACACCTTTTTCATTT
1 TTTCAAAGCCCACACAAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTTTCATTT
* * * * * * ** * *
1427167 CAAAGCCTACACGAGTT-GCTGGCACCCTTTAGTCGTCGAAGAGTAAGACACCTTTCTCCTTTCA
66 CAAAGCCCACACGAGTTAG-TGGCACCCTTTAGTCCTCAAAAAGCAGGATGCCTTTTTCGTTTCA
* * * * * * **
1427231 AAGCCCACACGAGTTGGTGGCACCCTTTAGTTCTAAAAGAGCAGGCCGCCTTTTTCTTTTCAAAG
130 AA--CC-CATGGGTTGGTGGC-CCATTTTGTCCTCAAAGAGCAGG-ATCCTTTTTCTTTTCAAAG
* * *
1427296 CCCACACAAGTTGGTGGCACCCTTTAGTCCTCAAAAATCAGGATGCCTTTTTCCTTTCAAAGCCC
190 CCCACAC-AGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTTTCTTTTCAAAGCCC
* * * * * * * **
1427361 GCACAAGTTTGTGGCACCCTTTAGTCCTTAAAGAGCAAGATGTCTTTTTCCTTTCAGCGCCCACA
254 ACACGAGTTGGTGGCACCCTTTAGTTCTGAAAGAGCAGGATGCCTTTTTCCTTTCAAAGCCCACA
** * * ** * *** *** *
1427426 CGTGTTGGTGGCACCCTTCAGTCTCCTTTCAAAGCCCACACAAGTTGGTGGCACCCTTC-A-GTC
319 CAAGTTTGTGGCACCCTTTAG--TCC--TCAAAGAGCA-ACATG-CCCT-TTTCCTTTCAACG-C
* **
1427489 CTCA-AAGAGCAGGAT-G--CC-TT---TCTCC
376 C-CACACGAGTTGG-TGGCACCATTCAGTCTCC
* * * * * * * *
1427514 TTTCAAAGCCAACACGAGTTGGTGACATCTTTTAGTCCTCAAAAAGCAGGTTGCCTTTTTCGTTT
1 TTTCAAAGCCCACACAAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTTTCATTT
* * * * ** * * *
1427579 CAAA-CCTACACGGGTTGGTGGC-CTCATTTTTTCCTCAAAGAGTAGGACT-CCTTTTTCTTTTC
66 CAAAGCCCACACGAGTTAGTGGCAC-CCTTTAGTCCTCAAAAAGCAGGA-TGCCTTTTTCGTTTC
* * * * ** * * *
1427641 AAAGCCTACACGAGTTTGTGGCACCCTTTAATTCTGAAAGAGCAGGACGCCTTTTTCTTTTCAAA
129 AAA-CC--CATGGGTTGGTGGC-CCATTTTGTCCTCAAAGAGCAGGA-TCCTTTTTCTTTTCAAA
* * * * * *
1427706 GCCCACACGAGTTTGTGACACCCTTTAGTCCTCAAAGAGCAAGATGCCCTTTTCCTTTCAATGCC
189 GCCCACAC-AGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTTTCTTTTCAAAGCC
1427771 CACACGAGTTGGTGGCA-CC---A--T-T-------CA-G-T--C----TCCTTTCAAAGCCCAC
253 CACACGAGTTGGTGGCACCCTTTAGTTCTGAAAGAGCAGGATGCCTTTTTCCTTTCAAAGCCCAC
* * ** * * * *
1427814 ACAAGTTGGTGGCACCCTTTAGTCCTCAAATAGCAGGATGCCTTTTTCATTTCAAAGCTCACACG
318 ACAAGTTTGTGGCACCCTTTAGTCCTCAAAGAGCAACATGCCCTTTTCCTTTCAACGCCCACACG
** *
1427879 AGTTCATGGCACCCTTTAGTCCTTAAAATGCAGGATGCCTTTTTCG
383 AGTTGGTGGCA-CC---A-----T----T-CA-G-T--C----TCC
* * *** * * * * ** *
1427925 TTTAAAAACCCACATTGGTTGGTGG-TCCATTTTGTCTTCAAAGAGCAGGACACCTTTTTCTTTT
1 TTTCAAAGCCCACACAAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTTTCATTT
* * * * ** *
1427989 CAAAGCCCGCAC-ATGTT-GTTGGCACCCTTTAGTCCTCAAAGAGCAAGACGTATTTTTCTTTTC
66 CAAAGCCCACACGA-GTTAG-TGGCACCCTTTAGTCCTCAAAAAGCAGGATGCCTTTTTCGTTTC
* * * * * * *
1428052 AAAGCCCACAGAAGTTGATGGGACCC-TTTAGTCCTCAAATAGCAGGATGCCTTTTTCCTTTCGA
129 AAA-CCCA-TG-GGTTGGT-GG-CCCATTTTGTCCTCAAAGAGCAGGAT-CCTTTTTCTTTTCAA
* * * * *
1428116 AGCCCGCACGAGTTGGTGGCACCCTTCAGTCCTCAAAAAGTAGGATGCCTTTTTCCTTTCAAAGC
188 AGCCCACAC-AGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTTTCTTTTCAAAGC
* * * *
1428181 CCACACGAGTTAGTGGCACCCTTTAGTCCTCAAAGAGCAGCATGCC---TT--TTT---------
252 CCACACGAGTTGGTGGCACCCTTTAGTTCTGAAAGAGCAGGATGCCTTTTTCCTTTCAAAGCCCA
* * *
1428232 ---AA----GTGGCACCCTTTAGTCCTCAAAGAGCAAGACG-CTTTTTCCTTTCGAA-GCCCACA
317 CACAAGTTTGTGGCACCCTTTAGTCCTCAAAGAGCAACATGCCCTTTTCCTTTC-AACGCCCACA
* *
1428288 C-AGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAAGACACCTTTTTCA
381 CGAGTTGGTGGCA-CC---A-T--T-------C-AG-------TCTCC
* * * * * * * ** * *
1428335 TTTCAAAGCCTACACGAGTTGCTGGCACCCTTTAGTCGTCGAAGAGTAAGACACCTTTCTCCTTT
1 TTTCAAAGCCCACACAAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTTTCATTT
* * ** *
1428400 CAAAGCCCACACGAGTTGGTGGCACCCTTTAGTTCT-AAAAGAGCAGGCCGCCTTTTTCTTTTCA
66 CAAAGCCCACACGAGTTAGTGGCACCCTTTAGTCCTCAAAA-AGCAGGATGCCTTTTTCGTTTCA
*** * * * * *
1428464 AAGCCCACACAAGTTGGTGGCACCCTTTAGTCCTCAAAAATCAGGATGCCTTTTTCCTTTCAAAG
130 AA--CC-CATGGGTTGGTGGC-CCATTTTGTCCTCAAAGAGCAGGAT-CCTTTTTCTTTTCAAAG
* * * * * **
1428529 CCCACACAAGTTTGTGGCACCCTTTAGTCCTTAAAGAGCAAGATGTCTTTTTCCTTTCAGCGCCC
190 CCCACAC-AGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTTTCTTTTCAAAGCCC
*
1428594 ACACGTGTTGGTGGCACCC------T-T-------CA-G-T--C----TCCTTTCAAAGCCCACA
254 ACACGAGTTGGTGGCACCCTTTAGTTCTGAAAGAGCAGGATGCCTTTTTCCTTTCAAAGCCCACA
* * ** * *
1428637 CAAGTTGGTGGCACCCTTCAGTCCTCAAAGAGCAGGATG-CCTTTCTCCTTTCAAAGCCAACACG
319 CAAGTTTGTGGCACCCTTTAGTCCTCAAAGAGCAACATGCCCTTT-TCCTTTCAACGCCCACACG
* * *
1428701 AGTTGGTGACATCTTTTAGTCCTCAAAAAGCAGGTTGCCTTTTTCG
383 AGTTGGTGGCA-C---CA-T--T-------CA-G-T--C----TCC
* ** * ** * *
1428747 TTTCAAA-CCTACACGGGTTGGTGGC-CTCATTTTTTCCTCAAAGAGTAGGACT-CCTTTTTCTT
1 TTTCAAAGCCCACACAAGTTGGTGGCAC-CCTTTAGTCCTCAAAGAGCAGGA-TGCCTTTTTCAT
* * * * * *
1428809 TTCAAAGCCTACACGAGTTTGTGGCACCCTTTAGTTCTGAAAGAGCAGGATGCCTTTTTCTTTTC
64 TTCAAAGCCCACACGAGTTAGTGGCACCCTTTAGTCCTCAAAAAGCAGGATGCCTTTTTCGTTTC
* * * * * * * * * * *
1428874 AAAGCCCACACGAGTTTGTGACACCCTTTAGTCTTCAAAGAGCAAGATGCCCTTTTCCTTTCAAT
129 AAA--CC-CATGGGTTGGTGGC-CCATTTTGTCCTCAAAGAGCAGGAT-CCTTTTTCTTTTCAAA
*
1428939 GCCCACACGAGTTGGTGGCACCATTCAGTCTCCTTTCAAAGCCCACACAAGTTGGTGGCACCCTT
189 GCCCACAC-AGTTGGTGG-------CA--C-CCTTT---AG---TC-C-------T--CA-----
* * * **
1429004 TAGTCCTCAAATAGCAGGATGCCTTTTTCATTTCAAAGCTCACACGAGTTCATGGCACCCTTTAG
222 ---------AAGAGCAGGATGCCTTTTTCTTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAG
* * * * * *** * * * *
1429069 TCCTTAAA-ATGCAGGATGCCTTTTTCGTTTAAAAACCCACATTGGTTGGTGG-TCCATTTTGTC
278 TTCTGAAAGA-GCAGGATGCCTTTTTCCTTTCAAAGCCCACACAAGTTTGTGGCACCCTTTAGTC
* * * * * *
1429132 TTCAAAGAGCAGGACA--CCTTTTTCTTTTCAAAGCCCGCAC-ATGTTGTTGGCACCCTTTAGTC
342 CTCAAAGAGCA--ACATGCCCTTTTCCTTTCAACGCCCACACGA-GTTGGTGGCA-CC---A-T-
* *
1429194 CTCAAAGAGCAAGACGTATTTTTCT
398 -T-------C---A-G----TCTCC
* * * * *
1429219 TTTCAAAGCCCACAGAAGTTGATGGGACCCTTTAGTCCTCAAATAGCAGGATGCCTTTTTCCTTT
1 TTTCAAAGCCCACACAAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTTTCATTT
** * * * *
1429284 CGTAGCCCGCACGAGTTGGTGGCACCCTTCAGTCCTCAAAAAGCAGGATGCCTTTTTCCTTTCAA
66 CAAAGCCCACACGAGTTAGTGGCACCCTTTAGTCCTCAAAAAGCAGGATGCCTTTTTCGTTTCAA
* * * * *
1429349 AGCCCACACGAGTTAGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCC----T-TTTT----G-
131 A--CC-CATGGGTTGGTGGC-CCATTTTGTCCTCAAAGAGCAGGAT-CCTTTTTCTTTTCAAAGC
** * *
1429404 ------A----GTGGCACCCTTTAGTCCGGAAAGAGCAAGATGCCTTTTTCCTTTCAAAGCCCAC
191 CCACACAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTTTCTTTTCAAAGCCCAC
* * * * ** * *
1429459 AC-AGTTGGTGGCACCCTTTAATCCTCAAAGAGCAAGACACCTTTTTCCTTTCAAAGCCTACACG
256 ACGAGTTGGTGGCACCCTTTAGTTCTGAAAGAGCAGGATGCCTTTTTCCTTTCAAAGCCCACACA
* * ** ** * *
1429523 AG-TTGCTGGCACTCTTTAGTCCTCGAAGAGCAGGATGCTTTTTTCCTTTCAAAGCCCACAGGAG
321 AGTTTG-TGGCACCCTTTAGTCCTCAAAGAGCAACATGCCCTTTTCCTTTCAACGCCCACACGAG
*
1429587 TTGGTGGCACCTTTTAGTCCTCAAAGAGTAGGACGCATTTTTCT
385 TTGGTGGCACC----A-T--TC----AGT------C-----TCC
* * * * *
1429631 TTTCAAAGCTCATACAAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGACGTCTTTTTCCTTT
1 TTTCAAAGCCCACACAAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTTTCATTT
* * * * *
1429696 CAAAGCCCACACGAGTTTGTGGCACCCTTTAATCCTCAAAGAGCAAGATGCCTTTTTCCTTTCAA
66 CAAAGCCCACACGAGTTAGTGGCACCCTTTAGTCCTCAAAAAGCAGGATGCCTTTTTCGTTTCAA
* * * * * *
1429761 CGCCCACACGAGTTGGTGGCACC---CT-T--T--------A-G-T-C----TCCTTTCAAAACC
131 --ACC-CATGGGTTGGTGGC-CCATTTTGTCCTCAAAGAGCAGGATCCTTTTTCTTTTCAAAGCC
* *
1429805 CACACAAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTTTCCTTTCTAAGCCCAC
192 CACAC-AGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTTTCTTTTCAAAGCCCAC
* * * * * * * * * * *
1429870 ACGAGTTCGTGGCACCATTTAGTCCTTAAAAAGAAGGATTCCTTTTTCATTTCAAAACTCACACG
256 ACGAGTTGGTGGCACCCTTTAGTTCTGAAAGAGCAGGATGCCTTTTTCCTTTCAAAGCCCACACA
* * * * * * * * *
1429935 AGTTGGTGG-TCCATTTTGTCCTCAAAGAGCAGGACA-G-CTTTTTCTTTTCAAAGCCCATATGT
321 AGTTTGTGGCACCCTTTAGTCCTCAAAGAGCA--ACATGCCCTTTTCCTTTCAACGCCCACA--C
* ** *
1429997 GTAGTTGGTGCCCTTTAGTCCTCAAAGAGCAAGAAGTATTTTTCC
382 G-AGTTGGTG-GC---A---C-C--A-TTC----AG----TCTCC
* * * *
1430042 TTTCAAAGCCCATAGAAGTTGGTGGCACCCTTTAATCCTCAAAGAGCAGGATGCCTTTTTCCTTT
1 TTTCAAAGCCCACACAAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTTTCATTT
* * *
1430107 CAAAGCCCGCACGAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTTT-G------
66 CAAAGCCCACACGAGTTAGTGGCACCCTTTAGTCCTCAAAAAGCAGGATGCCTTTTTCGTTTCAA
** * * * * * *
1430165 A--C------TGG-CACCC-GTTAGTCATCAAAGAGCAAGACGCCTTTTTCCTTTCAAAGCCCAC
131 ACCCATGGGTTGGTGGCCCATTTTGTCCTCAAAGAGCAGGA-TCCTTTTTCTTTTCAAAGCCCAC
* * * * ** * *
1430220 ACAGTTTGTGGAACCCTTTAGTCCTCTAAGAGCAAGACACCTTTTTCCTTTCGAAG----C-C--
195 ACAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTTTCTTTTCAAAGCCCACACGA
* * *
1430278 -----T---ACCC--GAG--C------A--A-GATGCCTTTTTCCTTTCAACGCCCACACGAGTT
260 GTTGGTGGCACCCTTTAGTTCTGAAAGAGCAGGATGCCTTTTTCCTTTCAAAGCCCACACAAGTT
* * ** *******
1430322 GGTGGCACCCTTCAGTCTCCTTTCAAAGCCCACACAAGTTGGTGGCACCCTTT--A-GTCCTCA-
325 TGTGGCACCCTTTAG--TCC--TCAAAGAGCA-AC-A--TGCCCTTTTCCTTTCAACG-CC-CAC
* ** *
1430383 AAGAGAAGGAT-G--CC-TT---TTTCC
380 ACGAGTTGG-TGGCACCATTCAGTCTCC
* ** * * * * * *
1430404 TTTCTAAGCCCACACGCGTTCGTGGCTCCATTTAGTCCTTAAAAAGCAGGATTCCTTTTTCATTT
1 TTTCAAAGCCCACACAAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTTTCATTT
* * * * * * ** *
1430469 CAAAACCCACACGAGTTGGTGG-TCCATTTTGTCCTCAAAGAGCAGGACACCTTTTTCTTTTCAA
66 CAAAGCCCACACGAGTTAGTGGCACCCTTTAGTCCTCAAAAAGCAGGATGCCTTTTTCGTTTCAA
* * * * * *
1430533 AGCCCACAGGTGTTGTTGGTACCC-TTTAGTCCTCAAAGAGCAAGA-CGTATTTTTCCTTTCAAA
131 A-CCCA-TGG-GTTGGTGG--CCCATTTTGTCCTCAAAGAGCAGGATC--CTTTTTCTTTTCAAA
* * * * *
1430596 GCCCATAGAAGTTGGTGGCACCCTTTAGTCCTAAAAGAGAAGGATGCCTTTTTCCTTTCAAAGCC
189 GCCCACA-CAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTTTCTTTTCAAAGCC
* * * * *
1430661 CGCACGAGTTGGTGGCACCCTTTAGTCCTCAAAAAGCAGGATGCCTTTCTCCTTTCAAAGCCCAC
253 CACACGAGTTGGTGGCACCCTTTAGTTCTGAAAGAGCAGGATGCCTTTTTCCTTTCAAAGCCCAC
* * * * ** ** *
1430726 ACGAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCATCATGCCTTTTTGAATGGCACCCTTTAGTC
318 ACAAGTTTGTGGCACCCTTTAGTCCTCAAAGAGCAACATGCCCTTTT-CCTTTCA-AC----G-C
* *** * * *
1430791 CTCA-AAGAG--CAAGACGCC-TT---TTTCC
376 C-CACACGAGTTGGTGGCACCATTCAGTCTCC
* **
1430816 TTTCAAAGCCCACAC-AGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAAGACACCTTTTTCATTT
1 TTTCAAAGCCCACACAAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTTTCATTT
* * * * ** *
1430880 CAAAGCCTACACGAGTT-GTTGGCACCCTTTAGTCCTCGAAGAGTAGGACACCTTTTTCCTTTCA
66 CAAAGCCCACACGAGTTAG-TGGCACCCTTTAGTCCTCAAAAAGCAGGATGCCTTTTTCGTTTCA
*** * * * * *
1430944 AAGCTCACACAAGTTGCTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTATTTCATTTCAAAG
130 AA-C-C-CATGGGTTGGTGGC-CCATTTTGTCCTCAAAGAGCAGGAT-CCTTTTTCTTTTCAAAG
* * * * * * *
1431009 CCCACACGAGTTCGTGGCACCCTTTAGTCCTTAAAAACCAGGATGCCTTTTTCGTTTAAAAACCC
190 CCCACAC-AGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTTTCTTTTCAAAGCCC
* * * * * * * ** *
1431074 ACATGGGTTGGTGG-TCCATTTTGTCCTCAAAGAGCAGGACACCTTTTTCTTTTCAAAGCCCACA
254 ACACGAGTTGGTGGCACCCTTTAGTTCTGAAAGAGCAGGATGCCTTTTTCCTTTCAAAGCCCACA
* * * *** * *
1431138 C--GTGTTGTTGGTACCCTTTAGTCCTCAAAGAGCAAGACGTATTTTTCCTTTCAAAGCCCATA-
319 CAAGT-TTG-TGGCACCCTTTAGTCCTCAAAGAGCAACATGCCCTTTTCCTTTCAACGCCCACAC
1431200 GAAGTTGGTGGCACCCTTTAGTCCTCAAAGAGAAGGATGCCTTTTTCC
382 G-AGTTGGTGGCA-CC---A-T--TC-------A-G-T--C----TCC
* * * * *
1431248 TTTCAAAGCCCGCACGAGTTGGTGGCACCCTTTAGTCCTTAAAAAGCAGGATGCCTTTTTCCTTT
1 TTTCAAAGCCCACACAAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTTTCATTT
* * * * *
1431313 CAAAGCCCACACGAGTTGGTGCCACCCTTTTGTCCTCAAAGAGCAGCATGCC---TT--TTT---
66 CAAAGCCCACACGAGTTAGTGGCACCCTTTAGTCCTCAAAAAGCAGGATGCCTTTTTCGTTTCAA
** * * * * *
1431370 A---A---G-TGG-CACCC-TTTAGTCCTCAAAGAGCAAGACACCTTTTTCCTTTCGAAGCCCAC
131 ACCCATGGGTTGGTGGCCCATTTTGTCCTCAAAGAGCAGGA-TCCTTTTTCTTTTCAAAGCCCAC
* ** * *
1431426 ACAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAAGACACCTTTTTCATTTCAAAGCCTACACGA
195 ACAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTTTCTTTTCAAAGCCCACACGA
* * * * ** *
1431491 GTTGTTGCCACCCTTTAGTCCTCG-AAGAGTAGGACACCTTTTTCCTTTCAAAGCTCACACAAGT
260 GTTGGTGGCACCCTTTAGTTCT-GAAAGAGCAGGATGCCTTTTTCCTTTCAAAGCCCACACAAGT
* ** * * *
1431555 TGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATG-CCTATTTCATTTCAAAGCCCACACGAGTTC
324 TTGTGGCACCCTTTAGTCCTCAAAGAGCAACATGCCCT-TTTCCTTTCAACGCCCACACGAGTTG
*
1431619 GTGGCACCCTTTAGTCCTTAAAAACTAGGATGCCTTTTTCG
388 GTGGCA-CC---A----TT-----C-A-G-T--C----TCC
* * *** * * * * *
1431660 TTTAAAAACCCACATGGGTTGGTGG-TCCATTTTGTCCTCAAAGAGCAGGATACCTTTTTCTTTT
1 TTTCAAAGCCCACACAAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTTTCATTT
* * * * * ** *
1431724 CAAAGCCCACACGTGTT-GTTGGTACCCTTTAGTCCTCAAAGAGCAAGACGTATTTTTCCTTTCA
66 CAAAGCCCACACGAGTTAG-TGGCACCCTTTAGTCCTCAAAAAGCAGGATGCCTTTTTCGTTTCA
* * ** *
1431788 AAGCCCATAGAAGTTGGTGGCACCCTTTAATCCTCAAAGAGCAGGATGCCTTTTTCCTTTCAAAG
130 AA-CCCAT-G-GGTTGGTGGC-CCATTTTGTCCTCAAAGAGCAGGAT-CCTTTTTCTTTTCAAAG
*
1431853 CCCGCACGAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTTT
190 CCCACAC-AGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTTT
1431905 GACTGGCACC
Statistics
Matches: 16270, Mismatches: 3291, Indels: 3856
0.69 0.14 0.16
Matches are distributed among these distances:
361 29 0.00
362 77 0.00
367 83 0.01
368 2 0.00
371 2 0.00
373 5 0.00
374 13 0.00
375 21 0.00
376 20 0.00
377 16 0.00
378 36 0.00
379 166 0.01
380 130 0.01
381 13 0.00
382 72 0.00
383 123 0.01
384 41 0.00
385 28 0.00
386 41 0.00
387 29 0.00
388 148 0.01
389 165 0.01
390 311 0.02
391 181 0.01
392 44 0.00
393 15 0.00
394 21 0.00
395 23 0.00
396 17 0.00
397 15 0.00
398 14 0.00
399 5 0.00
400 2 0.00
401 118 0.01
402 37 0.00
403 27 0.00
404 38 0.00
405 29 0.00
406 32 0.00
407 59 0.00
408 44 0.00
409 88 0.01
410 614 0.04
411 6028 0.37
412 2781 0.17
413 492 0.03
414 99 0.01
415 78 0.00
416 62 0.00
417 34 0.00
418 54 0.00
419 54 0.00
420 26 0.00
421 25 0.00
422 11 0.00
423 14 0.00
424 13 0.00
425 18 0.00
426 22 0.00
427 12 0.00
428 27 0.00
429 20 0.00
430 192 0.01
431 113 0.01
432 366 0.02
433 366 0.02
434 10 0.00
435 21 0.00
436 19 0.00
437 36 0.00
438 15 0.00
439 38 0.00
440 16 0.00
441 133 0.01
442 296 0.02
443 21 0.00
444 10 0.00
445 18 0.00
446 24 0.00
447 26 0.00
448 18 0.00
449 13 0.00
450 18 0.00
451 152 0.01
452 162 0.01
453 82 0.01
454 4 0.00
455 10 0.00
456 5 0.00
457 8 0.00
458 9 0.00
459 13 0.00
460 9 0.00
461 1 0.00
462 5 0.00
463 3 0.00
464 5 0.00
465 11 0.00
466 10 0.00
467 14 0.00
468 12 0.00
469 9 0.00
470 8 0.00
471 94 0.01
472 337 0.02
473 264 0.02
474 11 0.00
475 6 0.00
477 3 0.00
478 12 0.00
479 2 0.00
480 7 0.00
481 10 0.00
482 188 0.01
483 134 0.01
484 3 0.00
485 12 0.00
487 7 0.00
489 3 0.00
490 3 0.00
492 3 0.00
494 1 0.00
495 3 0.00
497 2 0.00
ACGTcount: A:0.24, C:0.27, G:0.19, T:0.30
Consensus pattern (406 bp):
TTTCAAAGCCCACACAAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTTTCATTT
CAAAGCCCACACGAGTTAGTGGCACCCTTTAGTCCTCAAAAAGCAGGATGCCTTTTTCGTTTCAA
ACCCATGGGTTGGTGGCCCATTTTGTCCTCAAAGAGCAGGATCCTTTTTCTTTTCAAAGCCCACA
CAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTTTCTTTTCAAAGCCCACACGAG
TTGGTGGCACCCTTTAGTTCTGAAAGAGCAGGATGCCTTTTTCCTTTCAAAGCCCACACAAGTTT
GTGGCACCCTTTAGTCCTCAAAGAGCAACATGCCCTTTTCCTTTCAACGCCCACACGAGTTGGTG
GCACCATTCAGTCTCC
Found at i:1410853 original size:349 final size:350
Alignment explanation
Indices: 1410116--1423875 Score: 2743
Period size: 350 Copynumber: 38.5 Consensus size: 350
1410106 CGTATTTTTC
* * *
1410116 CTTTCAAAGCCCATAGAAGTTGGTGGCACCCTTTAGTCCT-AAAAGAGCAGGATGCCTCTTTCCT
1 CTTTCAAAGCCCACACAAGTTGGTGGCACCCTTTAGTCCTCAAAA-AGCAGGATGCCTTTTTCCT
* * * * *
1410180 TTCAAAGCCCGCACGAGTTAGTGGCACCCTTTAGTCCTCAAAAAACAGGATGCCTTTTTCCTTTC
65 TTCAAAGCCCACACGAGTTGGTGGCACCTTTTAGTCCTCAAAAAGCAGGATGCCTTTTTCGTTTC
* * * * ** ** ** *
1410245 AAAGCCCACAC-GAGTTGGTGGCACCCTTTAGTTCTGAAAGAGCAGGATGCCTTTCCCCTTTCAA
130 AAAGCCCACACTG-GTTGGCGGCACCATTTAGTCCTCACTGAGCAGGACCCCTTTTTCTTTTCAA
* * * * ** **
1410309 AGCCCACACAAGTTTGTGGCACCCTTTAGTCCTCAAAGAGCAACATGCCTTTTTCCTTTCAGCGC
194 AGCCTACACGAGTTTGTGGCACCCTTTAGTTCTGAAAGAGCAGGATGCCTTTTTCCTTTCAAAGC
* * * * * * ****
1410374 CCACACGTGTTGGTGGCACCCTTCAGTCTCCTTTCAAAGCCCACACAAGTTG-GTGGCACCCTTT
259 CCACACGAGTTTGTGGCACCCTTTAG--T-C-TTCAAAG---A-GCAAGATGCCT-TTTTCCTTT
* * **
1410438 -AGT-CCTCA-AAGAGCAGGAT-G---CCTT---T-TT
315 CAATGCC-CACACGAGTTGG-TGGCACCCTTCAGTCTT
* * * * * * * *
1410465 CCTTTCAAAGCCAACACGAGTTAGTGACATCTTTTAGTCCTCAAAAAGCAGGTTGCCTTTTTCGT
1 -CTTTCAAAGCCCACACAAGTTGGTGGCACCCTTTAGTCCTCAAAAAGCAGGATGCCTTTTTCCT
* * * * * * *
1410530 TTCAAA-CCTACATGGGTTGGTGGC-CTCATTTT-TTCCTCAAAGAGTAGGACT-CCTTTTTCTT
65 TTCAAAGCCCACACGAGTTGGTGGCAC-C-TTTTAGTCCTCAAAAAGCAGGA-TGCCTTTTTCGT
* * *
1410591 TTCAAAGCCTACACTTGTTGGCGGCACCCTTTAGTCCTCACTGAGCAGGACCCCTTTTTCTTTTC
127 TTCAAAGCCCACACTGGTTGGCGGCACCATTTAGTCCTCACTGAGCAGGACCCCTTTTTCTTTTC
1410656 AAAGCCTACACGAGTTTGTGGCACCCTTTAGTTCTGAAAGAGCAGGATGCCTTTTTCCTTTCAAA
192 AAAGCCTACACGAGTTTGTGGCACCCTTTAGTTCTGAAAGAGCAGGATGCCTTTTTCCTTTCAAA
* * *
1410721 GCCCACACAAGTTTGTGGCACCCTTTAGTCTTCAAAGAGCAAGATGCCCTTTTCCTTTCAATGTC
257 GCCCACACGAGTTTGTGGCACCCTTTAGTCTTCAAAGAGCAAGATGCCTTTTTCCTTTCAATGCC
**
1410786 CACACGAGTTGGTGGCACTATTCAGTCTT
322 CACACGAGTTGGTGGCACCCTTCAGTCTT
* *
1410815 CTTTCAAAGCCCACACAAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTTTCATT
1 CTTTCAAAGCCCACACAAGTTGGTGGCACCCTTTAGTCCTCAAAAAGCAGGATGCCTTTTTCCTT
** * * *
1410880 TCAAAGCCCACACGAGTTCATGGCACCCTTTAGTCCTTAAAAAGCAGGATGCCTTTTTCGTTTAA
66 TCAAAGCCCACACGAGTTGGTGGCACCTTTTAGTCCTCAAAAAGCAGGATGCCTTTTTCGTTTCA
* * * * * ** * *
1410945 AAACCCGCA-TGGGTTGGTGG-TCCATTTTGTCCTCAAAGAGCAGGGCACCTTTTTCTTTTCAAA
131 AAGCCCACACT-GGTTGGCGGCACCATTTAGTCCTCACTGAGCAGGACCCCTTTTTCTTTTCAAA
* * * * *
1411008 GCCCACAC-ATGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTTTCTTTTCAAAGC
195 GCCTACACGA-GTTTGTGGCACCCTTTAGTTCTGAAAGAGCAGGATGCCTTTTTCCTTTCAAAGC
* * * * *
1411072 CCACACGAGTTGGTGGCACCTTTTAGT-TCTGAAAGAGCAGGATGCCTTTTTCCTTTCAAAGCCC
259 CCACACGAGTTTGTGGCACCCTTTAGTCT-TCAAAGAGCAAGATGCCTTTTTCCTTTCAATGCCC
* * * * *
1411136 ACACAAGTTTGCGGCACCCTTTAGTCTC
323 ACACGAGTTGGTGGCACCCTTCAGTCTT
* * *
1411164 CTTTCAAAGCCCACACAAGTTGGTGGCACCCATTAGTCTTCAAAAAGCAGGATGCTTTTTTCCTT
1 CTTTCAAAGCCCACACAAGTTGGTGGCACCCTTTAGTCCTCAAAAAGCAGGATGCCTTTTTCCTT
* *
1411229 TCAAAGCCCACACGAGTTGGTGACACCTTTTAGTCCTCAAAAAGCAGGGTGCCTTTTTCGTTTCA
66 TCAAAGCCCACACGAGTTGGTGGCACCTTTTAGTCCTCAAAAAGCAGGATGCCTTTTTCGTTTCA
* * * * * *
1411294 AA-CCTACTCGGGTTGGTGGC-CTCATTTTGTCCTCAAAGAGTAGGACTCCTTTTTCTTTAGTCT
131 AAGCCCACACTGGTTGGCGGCAC-CATTTAGTCCTC----------A---------C-TGAG---
* * *
1411357 TCAAAGAGCACGACCCTTTTTTTTTTTCAAAGCCTACACGGGTTTGTGGCACCTTTTAGTTCTGA
172 -C--AG-G-AC--CCC-TTTTTCTTTTCAAAGCCTACACGAGTTTGTGGCACCCTTTAGTTCTGA
* * * *
1411422 AAGAGCATGA-CCCATTTTTCCTTTTAAAGCCCACACGAGTTTGTGGCACCCTTTAGTCCTCAAA
229 AAGAGCAGGATGCC-TTTTTCCTTTCAAAGCCCACACGAGTTTGTGGCACCCTTTAGTCTTCAAA
* *
1411486 GAGCAAGATTCCTTTTTCTTTTCAATGCCCACACGAGTTGGTGGCACCCTTCAGTC-T
293 GAGCAAGATGCCTTTTTCCTTTCAATGCCCACACGAGTTGGTGGCACCCTTCAGTCTT
* *
1411543 CTTTTCAAAGCCCACACAAGTTGGTAGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTTTCCT
1 C-TTTCAAAGCCCACACAAGTTGGTGGCACCCTTTAGTCCTCAAAAAGCAGGATGCCTTTTTCCT
* * * *
1411608 TTCAAAGCCCACACGAGTTGGTGGCACCTTTTAGTTCTGAAAGAGCAGGATGCCTTTTTCCTTTC
65 TTCAAAGCCCACACGAGTTGGTGGCACCTTTTAGTCCTCAAAAAGCAGGATGCCTTTTTCGTTTC
** * *
1411673 AAAGCCCACACAAGTTTGCGGCACCCTTTAG---T--CT-----------C-----C-TTTCAAA
130 AAAGCCCACACTGGTTGGCGGCACCATTTAGTCCTCACTGAGCAGGACCCCTTTTTCTTTTCAAA
* * * * * * * *
1411716 GCCCACACAAGTTGGTGGCACCCATTAGTCCTCAAAAAGCAGGATGCTTTTTTCCTTTCAAAGCC
195 GCCTACACGAGTTTGTGGCACCCTTTAGTTCTGAAAGAGCAGGATGCCTTTTTCCTTTCAAAGCC
* * * * * * * * * *
1411781 CACACGAGTTGGTGACACCTTTTAGTCCTCAAAAAGCAGGGTGCCTTTTTCGTTTCAA-ACCTAC
260 CACACGAGTTTGTGGCACCCTTTAGTCTTCAAAGAGCAAGATGCCTTTTTCCTTTCAATGCCCAC
* * *
1411845 TCGGGTTGGTGG---CC-TCA-TTTT
325 ACGAGTTGGTGGCACCCTTCAGTCTT
* * *** * *** ** * * * *
1411866 ATCCTCAAAGAGTAGGACTCCTT--T----TTCTTTAGTCCTCAAAGAGCACGA-CCCTTTTTTT
1 CT-TTCAAAGCCCA-CACAAGTTGGTGGCACCCTTTAGTCCTCAAAAAGCAGGATGCC-TTTTTC
* * * * * * * * * *
1411924 TTTTCAAAGCCTACACGGGTTTGTGGCACCTTTTAGTTCTGAAAGAGCATGA-CCCATTTTTCCT
63 CTTTCAAAGCCCACACGAGTTGGTGGCACCTTTTAGTCCTCAAAAAGCAGGATGCC-TTTTTCGT
* * * * * ** * **
1411988 TTTAAAACCCACAC-GAGTTTGTGGCACCCTTTAGTCCTCAAAGAGCAAGATTCCTTTTTCTTTT
127 TTCAAAGCCCACACTG-GTTGGCGGCACCATTTAGTCCTCACTGAGCAGGACCCCTTTTTCTTTT
* * * *
1412052 CAATGCCCACACGAGTTGGTGGCACCCTTCAGTCTCTTTTCAAAGCCCACACAAGTTGGTAGCAC
191 CAAAGCCTACACGAGTTTGTGGCACCCTTTAGT-TC---T----G--------A------A--A-
* ** *
1412117 CCTTTAGTCCTCAAAGAGCAGGATGCCTTTTTCCTTTCTAAGCCCACACGAGTTCATGGCACCAT
231 ---------------GAGCAGGATGCCTTTTTCCTTTCAAAGCCCACACGAGTTTGTGGCACCCT
* * * **
1412182 TTAGTCCTT-AAAAAGCAAGATTCCTTTTTCATTTCAAAACCCACACGAGTTGGTGGTCCATTTT
281 TTAGT-CTTCAAAGAGCAAGATGCCTTTTTCCTTTCAATGCCCACACGAGTTGGTGG--CA----
** *
1412246 GTCCTCAAAGAGCAGGACACCTTTTT
339 --CC-C----TTCA-G------TCTT
** * * * * * **
1412272 CTTTTCAAAGCCCACACGTGTTGTTGGTACCCTTTAGTCCTCAAAGAGCAAGACGTATTTTTCCT
1 C-TTTCAAAGCCCACACAAGTTGGTGGCACCCTTTAGTCCTCAAAAAGCAGGATGCCTTTTTCCT
* * * * * *
1412337 TTCAAAGCCCATA-GAAGTTGGTGGCACCCTTTAGTCCTGAAAGAGCAGGATGCCTCTTTCCTTT
65 TTCAAAGCCCACACG-AGTTGGTGGCACCTTTTAGTCCTCAAAAAGCAGGATGCCTTTTTCGTTT
* * * * *** ** *
1412401 CAAAGCCCGCAC-GAGTTAGTGGCACCCTTTAGTCCTCAAAAAGCAGGATGCCTTTTTCCTTTCA
129 CAAAGCCCACACTG-GTTGGCGGCACCATTTAGTCCTCACTGAGCAGGACCCCTTTTTCTTTTCA
* * **
1412465 AAGCCCACACGAGTTGGTGGCACCCTTTAGTTCTGAAAGAGCAGGATGCCTTTCCCCTTTCAAAG
193 AAGCCTACACGAGTTTGTGGCACCCTTTAGTTCTGAAAGAGCAGGATGCCTTTTTCCTTTCAAAG
* * * **
1412530 CCCACACAAGTTTGTGGCACCCTTTAGTCCTCAAAGAGCAACATGCCTTTTTCCTTTCAGCGCCC
258 CCCACACGAGTTTGTGGCACCCTTTAGTCTTCAAAGAGCAAGATGCCTTTTTCCTTTCAATGCCC
* *
1412595 ACACGTGTTGGTGGCACCCTTCAGTCTC
323 ACACGAGTTGGTGGCACCCTTCAGTCTT
*
1412623 CTTTCAAAGCCCACACAAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTTTCCTT
1 CTTTCAAAGCCCACACAAGTTGGTGGCACCCTTTAGTCCTCAAAAAGCAGGATGCCTTTTTCCTT
* * * * *
1412688 TCAAAGCCAACACGAGTTAGTGACATCTTTTAGTCCTCAAAAAGCAGGTTGCCTTTTTCGTTTCA
66 TCAAAGCCCACACGAGTTGGTGGCACCTTTTAGTCCTCAAAAAGCAGGATGCCTTTTTCGTTTCA
* * ** ** * *
1412753 AA-CCTACA-TGGGTTGGTGGC-CTCATTTTTTCCTCAAAGAGTAGGACTCCTTTTTCTTTTCAA
131 AAGCCCACACT-GGTTGGCGGCAC-CATTTAGTCCTCACTGAGCAGGACCCCTTTTTCTTTTCAA
** * * * * ** ** *
1412815 AGCCTACACTTGTTGGCGGCACCCTTTAGTCCTCACTGAGCAGGACCCCTTTTTCTTTTCAAAGC
194 AGCCTACACGAGTTTGTGGCACCCTTTAGTTCTGAAAGAGCAGGATGCCTTTTTCCTTTCAAAGC
* * * *
1412880 CTACACGAGTTTGTGGCACCCTTTAGT-TCTGAAAGAGCAGGATGCCTTTTTCCTTTCAAAGCCC
259 CCACACGAGTTTGTGGCACCCTTTAGTCT-TCAAAGAGCAAGATGCCTTTTTCCTTTCAATGCCC
* * *
1412944 ACACAAGTTTGTGGCACCCTTTAG---T
323 ACACGAGTTGGTGGCACCCTTCAGTCTT
* * ******* * *** ** * *
1412969 C-TTCAAAG---A-GCAAGATGCCCTTTTCCTTTCAATGTCCACACGAGTTGGTGGCACTATTCA
1 CTTTCAAAGCCCACACAAGTTGGTGGCACCCTTT--A-GTCCTCA--A----AAAGCAGGATGCC
* * * * *
1413029 GTCTT-CTTTCAAAGCCCACACAAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTT
57 TTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCTTTTAGTCCTCAAAAAGCAGGATGCCTTT
* *** * * *** **
1413093 TTCATTTCAAAGCCCACAC-GAGTTCATGGCACCCTTTAGTCCTTAAAAAGCAGGATGCCTTTTT
122 TTCGTTTCAAAGCCCACACTG-GTTGGCGGCACCATTTAGTCCTCACTGAGCAGGACCCCTTTTT
* * * ** * * * * * * * * *** *
1413157 CGTTTAAAAACCCGCATGGGTTGGTGG-TCCATTTTGTCCTCAAAGAGCAGGGCACCTTTTTCTT
186 CTTTTCAAAGCCTACACGAGTTTGTGGCACCCTTTAGTTCTGAAAGAGCAGGATGCCTTTTTCCT
* ** * *
1413221 TTCAAAGCCCACAC-A-TGTTGTTGGCACCCTTTAGTCCTCAAAGAGCAAGATGTATTTCTCTTT
251 TTCAAAGCCCACACGAGT-TTG-TGGCACCCTTTAGTCTTCAAAGAGCAAGATGCCTTTTTCCTT
* *
1413284 TCAAAGCCCACA-GAAGTTGATGGCACCCTTTAGTCCCCAAAGAGCAGGATGCCTTTTT
314 TCAATGCCCACACG-AGTTGGTGGCACCC--T--T----------CA-G-T--C---TT
* * * * ** * * *
1413342 CCCTTCAAAGCCCGCACGAGTTTGTGAAACCCTTCAGCCCTCAAAAATCAGGATGCCTTTTTCCT
1 -CTTTCAAAGCCCACACAAGTTGGTGGCACCCTTTAGTCCTCAAAAAGCAGGATGCCTTTTTCCT
* * * * *
1413407 TTCAAAGCCCACACTAGTTAGTGGCACCCTTTAGTCCTCAAAGAGTAGGATGCCTTTTT-G----
65 TTCAAAGCCCACACGAGTTGGTGGCACCTTTTAGTCCTCAAAAAGCAGGATGCCTTTTTCGTTTC
* * ** * * *
1413467 --AG-------TGG-T------ACCCTTTAGTCCTGAAAGAGCAAGACGCCTTTTTCCTTTCAAA
130 AAAGCCCACACTGGTTGGCGGCACCATTTAGTCCTCACTGAGCAGGACCCCTTTTTCTTTTCAAA
* ** * * * * * ** * *
1413516 GCCCACAC-AGTCGGTGGCACCCTTCAGTCCTTAAGGAGTAGGACACTTTTTTCCATTCAAAGCC
195 GCCTACACGAGTTTGTGGCACCCTTTAGTTCTGAAAGAGCAGGATGCCTTTTTCCTTTCAAAGCC
* * * * *
1413580 CACACGAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAAGACGTC-TTTTCCTTTTCAAAGCCCA
260 CACACGAGTTTGTGGCACCCTTTAGTCTTCAAAGAGCAAGATGCCTTTTTCC-TTTCAATGCCCA
* *
1413644 CACAAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGAACGCCTTTTT
324 CACGAGTTGGTGGCACCC-----T--T-------C---A-G---TCTT
* ** * * *
1413692 CCTTTCAAAGCCCACACGAGTTTATGGCACCCTTTAGTCCTTAAAGAGCAGGATGCCATTTTCCT
1 -CTTTCAAAGCCCACACAAGTTGGTGGCACCCTTTAGTCCTCAAAAAGCAGGATGCCTTTTTCCT
* * * *
1413757 TTCAATGCCCATACGAGTTGGTGGCA-C-------CCT------TC-GG-T--C----TCCTTTC
65 TTCAAAGCCCACACGAGTTGGTGGCACCTTTTAGTCCTCAAAAAGCAGGATGCCTTTTTCGTTTC
* * * * ** ** * *
1413800 AAAGCCCACACTAGTTGGTGGCACCCTTCT-GTCCCCAAAGAGCAGGATGCCTTTTTCCTTTAAA
130 AAAGCCCACACTGGTTGGCGGCACCATT-TAGTCCTCACTGAGCAGGACCCCTTTTTCTTTTCAA
* * * * *
1413864 AGCCCACACGAGTTGGTGGCACCTTTTAGTCCTTG-AAGAGCAAGATGCCTTTTTCCTTTCAAAG
194 AGCCTACACGAGTTTGTGGCACCCTTTAGTTC-TGAAAGAGCAGGATGCCTTTTTCCTTTCAAAG
* * * ** * *
1413928 CCCACAC-AATTGGTGGCACCCTTTAGTCCTCAAAGAGCTGGATGCCTTTTTCTTTTCAAAGCCC
258 CCCACACGAGTTTGTGGCACCCTTTAGTCTTCAAAGAGCAAGATGCCTTTTTCCTTTCAATGCCC
* * * *
1413992 ACACGACTTTGTGGGACCCTTTAGTC--
323 ACACGAGTTGGTGGCACCCTTCAGTCTT
*** * * ** * ** ** ***
1414018 C--TCAAAGAGGA-AGATGCCTT--TTTCA---TTCAACG-CC-CACACGAGTTGGGGGCACCAT
1 CTTTCAAAGCCCACACAAG--TTGGTGGCACCCTT-TA-GTCCTCA-AAAAG--CAGGATGCC-T
* * * * *
1414073 TCAGTCTCCTTTCAAAGCCCACACAAGTTGGTGGCAGCC-ATTAGTCCTCAAAGAGCAGGATGCT
58 T---TTTCCTTTCAAAGCCCACACGAGTTGGTGGCA-CCTTTTAGTCCTCAAAAAGCAGGATGCC
* ** * * * *** ***
1414137 TTTTTCCTTTCAAAGCCCACACAAGTTGGTGACACCTTTTAGTCCTCAAAAAGCAGGGTGCCTTT
119 TTTTTCGTTTCAAAGCCCACACTGGTTGGCGGCACCATTTAGTCCTCACTGAGCAGGACCCCTTT
* * * * * * * *
1414202 TTCGTTTCAAA-CCTACACGGGTTGGTGGC-CTCATTTTGTCCTCAAAGAGTAGGACT-CCTTTT
184 TTCTTTTCAAAGCCTACACGAGTTTGTGGCAC-CCTTTAGTTCTGAAAGAGCAGGA-TGCCTTTT
* * ** * * * * * * * **
1414264 T-CTTT---TGTCCTCA-AAGAG-CAG-GAC-CCCTTTTAATTTTCAAAG-CCTACACGAGTTTG
247 TCCTTTCAAAG-CC-CACACGAGTTTGTGGCACCC-TTTAGTCTTCAAAGAGCAAGATGCCTTT-
* * * ** * **
1414320 TGGCACCCTTT-AGTTCTGA-AAGAGCAGGAT-G---CCTT---T-TT
308 T----TCCTTTCAATGCCCACACGAGTTGG-TGGCACCCTTCAGTCTT
* * * * * *
1414358 CCTTTCAAAGCCCACACGAGTTTGTGGCACCCTTTAGTCCTCAAAGAGCAAGATGCCCTTTTCCA
1 -CTTTCAAAGCCCACACAAGTTGGTGGCACCCTTTAGTCCTCAAAAAGCAGGATGCCTTTTTCCT
** * *
1414423 TTCAATTCCCACACGAGTTGGTGGCAACATTCAGTCTCCTTTCAAAGCCCACACAAGTTGGTGGC
65 TTCAAAGCCCACACGAGTTGGTGG---CA--C---CT--TTT---AG-TC-CTCAA---------
* ***
1414488 ACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTTT-GATTTCAAAGCTCACAC-GAGTTCATGGCA
106 A---------------A-AGCAGGATGCCTTTTTCG-TTTCAAAGCCCACACTG-GTTGGCGGCA
** * *** * ** * * * * * * *
1414551 CCCCTTAGTCCTTAAAAAACAGGATGCCTTTTTCGTTTAAAAACCCACATGTGTTGGTAGTGCA-
153 CCATTTAGTCCTCACTGAGCAGGACCCCTTTTTCTTTTCAAAGCCTACACGAGTTTGT-G-GCAC
* * * ** *
1414615 --TTTTGTCCTCAAAGAGCAGGACACCTTTTTCTTTTCAAAGCCCACAC-A-TGTTGTTGGCACC
216 CCTTTAGTTCTGAAAGAGCAGGATGCCTTTTTCCTTTCAAAGCCCACACGAGT-TTG-TGGCACC
* * ** * * *
1414676 CTTTAGTCCTCAAAGAGCAAGACGTATTTTTCTTTTCAAAGCCCACA-GAAGTTGATGGCACCCT
279 CTTTAGTCTTCAAAGAGCAAGATGCCTTTTTCCTTTCAATGCCCACACG-AGTTGGTGGCA-CC-
1414740 TTAGTCTTCAAAGAGCAGGATGCCTTTTT
341 -----CTT-------CA-G-T--C---TT
* * * **
1414769 CCTTTCAAAGCCCAAACGAGTTGGTGGCACCCTTCAGTCCTCAAAAAAAAGGATGCCTTTTTCCT
1 -CTTTCAAAGCCCACACAAGTTGGTGGCACCCTTTAGTCCTCAAAAAGCAGGATGCCTTTTTCCT
* *
1414834 TTCAAAGCCCACACGAGTTAGTGGCACCCTTTAGTCCTCAAAAAGCAGGATGCC---TT--TTT-
65 TTCAAAGCCCACACGAGTTGGTGGCACCTTTTAGTCCTCAAAAAGCAGGATGCCTTTTTCGTTTC
* ** ** * * * * *
1414893 ---G-----A---G-T---GGCACCCTTTAGTCCGGAAAGAGGAAGACGCCTGTTTCCTTTCAAA
130 AAAGCCCACACTGGTTGGCGGCACCATTTAGTCCTCACTGAGCAGGACCCCTTTTTCTTTTCAAA
* * * * * * * **
1414943 GGCC-ACAC-AGTTGGTGGCACCATTTAATCCTCAAAGAGAAAGACACCTTTTTCCTTTCAAAGC
195 -GCCTACACGAGTTTGTGGCACCCTTTAGTTCTGAAAGAGCAGGATGCCTTTTTCCTTTCAAAGC
* * * * * * * *
1415006 CTACATGAG-TTGCTGGCACCCATTAGTCCTCGAAGAGCAGGATGCCTTTTTTTCTTTCAAAGCC
259 CCACACGAGTTTG-TGGCACCCTTTAGTCTTCAAAGAGCAAGATGCC-TTTTTCCTTTCAATGCC
*
1415070 CACACGAGTTGGTGGCACCTTTTAGTCCTCAAAGAGTAGGTCGCCTTTTT
322 CACACGAGTTGGTGGCACC-------CTTC-------A-GT---C---TT
* * * * *
1415120 CTTTTCAAAGCTCATACATGTTGGTGGCACCCTTTAGTCCTCAAAAATCAGGATGCCTTTTTGCT
1 C-TTTCAAAGCCCACACAAGTTGGTGGCACCCTTTAGTCCTCAAAAAGCAGGATGCCTTTTTCCT
* * * * * *
1415185 TTCAAAGCCAACACTAGTTAGTGGCACCCTTTAGTCCTCAAAGAGTAGGATGCCTTTTT-G----
65 TTCAAAGCCCACACGAGTTGGTGGCACCTTTTAGTCCTCAAAAAGCAGGATGCCTTTTTCGTTTC
* ** * * * *
1415245 --AG-------TGG-T------ACCCTTTAGTCCTCAAAGACCAAGACACCTTTTTCCTTTCAAA
130 AAAGCCCACACTGGTTGGCGGCACCATTTAGTCCTCACTGAGCAGGACCCCTTTTTCTTTTCAAA
* * ** * * * * * ** * *
1415294 GCCCACA-TAGTCGGTGGTACCCTTCAGTCCTTAAAGAGTAGGACACTTTTTTCCTTTCAAAGCT
195 GCCTACACGAGTTTGTGGCACCCTTTAGTTCTGAAAGAGCAGGATGCCTTTTTCCTTTCAAAGCC
* * * * * *
1415358 CACACGAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGACGCCTTTTTCTTTTCAAAGCCCAC
260 CACACGAGTTTGTGGCACCCTTTAGTCTTCAAAGAGCAAGATGCCTTTTTCCTTTCAATGCCCAC
*
1415423 ACAAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAAGATGCCTTTTT
325 ACGAGTTGGTGGCACCC-----T--T-------C-AG-T--C---TT
* * * * * * *
1415470 CCTTTCAAAGCCCACACGAGTTTGTGGCACCCCTTAGTCCTTAAAGAGTAGGATGCCATTTTCCT
1 -CTTTCAAAGCCCACACAAGTTGGTGGCACCCTTTAGTCCTCAAAAAGCAGGATGCCTTTTTCCT
* * *
1415535 TTCAATGCCCACACGAGTTGGTGG---C----A-TCCT------TC-GG-T--C----TCCTTTC
65 TTCAAAGCCCACACGAGTTGGTGGCACCTTTTAGTCCTCAAAAAGCAGGATGCCTTTTTCGTTTC
* * * * * ** ** * *
1415578 AAAGCCCATACTAGTTGGTGGCACCCTTCT-GTCCCCAAAGAGCAGGATGCCTTTTTCCTTTAAA
130 AAAGCCCACACTGGTTGGCGGCACCATT-TAGTCCTCACTGAGCAGGACCCCTTTTTCTTTTCAA
* * * * *
1415642 AGCCCACACGAGTTGGTGTCACCTTTTAG-TCGTTG-AAGAGCACGATGCCTTTTTCCTTTCAAA
194 AGCCTACACGAGTTTGTGGCACCCTTTAGTTC--TGAAAGAGCAGGATGCCTTTTTCCTTTCAAA
* * * ** **
1415705 GCCCACAC-AGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGACACCTTTTTCCTTTCAAAACC
257 GCCCACACGAGTTTGTGGCACCCTTTAGTCTTCAAAGAGCAAGATGCCTTTTTCCTTTCAATGCC
1415769 CACACGAGTTGGTGGCACCCTTTAGTCCCTAAAGAGCAGGATGCCTTTTT
322 CACACGAGTTGGTGGCACCC-----T---T------CA-G-T--C---TT
** * * * * **
1415819 CCTTTCAAAGCCCACACGGGTAGGTGGCTCCCTTTAGCCCTTAAAAAGCCA-GACACCTTTTTCC
1 -CTTTCAAAGCCCACACAAGTTGGTGGCACCCTTTAGTCCTCAAAAAG-CAGGATGCCTTTTTCC
* * * * * * *
1415883 TTTCAAAGGCCACACGAGTCGGTGGCTCTCTTTT-GTCCTCAAAGAGTAGGATGCTTTTTTCCTT
64 TTTCAAAGCCCACACGAGTTGGTGGCAC-CTTTTAGTCCTCAAAAAGCAGGATGCCTTTTTCGTT
* * ** ** ** *
1415947 TCAAAGCCCACAC-GAGTTGGAGGCACCCTTTAGTCCTCAAAGAGTGGGATGCCTTTTTCATTTC
128 TCAAAGCCCACACTG-GTTGGCGGCACCATTTAGTCCTCACTGAGCAGGACCCCTTTTTCTTTTC
* * * * * * *
1416011 AAAGCCCACACGAGTTGGTGGCACCCTTTAGTCCTCAAAGAGGAGGATGTCTTTTTCC-ATCAAA
192 AAAGCCTACACGAGTTTGTGGCACCCTTTAGTTCTGAAAGAGCAGGATGCCTTTTTCCTTTC-AA
** * * ** * * * *
1416075 AGGGCAAACGAGTTGGTGGCATTCTTTAGCCCTCAATGAGCAAGATG-CTTCTTT-CTTTCAAAG
256 AGCCCACACGAGTTTGTGGCACCCTTTAGTCTTCAAAGAGCAAGATGCCTT-TTTCCTTTCAATG
* * *
1416138 CCCAAACGAGTTGGTGGCATTCTTTTGTCCTCAAAGAGCAAGACACCTTTTT
320 CCCACACGAGTTGGTGGCA--C------CCT------TC-AG------TCTT
* * * * * * * *
1416190 CCTTTCAAATCCCACACGAGTTGG-GGGACCCTTTACTCCTTAAAGAGCCA-GAAGCCTTTTTCT
1 -CTTTCAAAGCCCACACAAGTTGGTGGCACCCTTTAGTCCTCAAAAAG-CAGGATGCCTTTTTCC
* * * ** * * *
1416253 TTTCAAAGCCCGCATGGGTTGGTCACACCATTTT-GTCCTCAAAGAG-AGTGATACCTTTTTCTT
64 TTTCAAAGCCCACACGAGTTGGTGGCACC-TTTTAGTCCTCAAAAAGCAG-GATGCCTTTTTCGT
** * * * * ** ** *
1416316 TTCAAAGCCCACACAAGTTGGTGGCACCCTTTACTCCTTAAAGAGCAGGATGCTTTTTTCTTTTC
127 TTCAAAGCCCACACTGGTTGGCGGCACCATTTAGTCCTCACTGAGCAGGACCCCTTTTTCTTTTC
* * * * * * *
1416381 AAAGCCCACACGGGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAAGACATG--TTTTTCCTTTTA
192 AAAGCCTACACGAGTTTGTGGCACCCTTTAGTTCTGAAAGAGC-AG-GATGCCTTTTTCCTTTCA
* * * * *
1416444 AAGCCCACACAAGTTGGTGGCACCTTTTGGT-TCTCAAAGAGCAAGATGCCTTTTTCCTTTCAAA
255 AAGCCCACACGAGTTTGTGGCACCCTTTAGTCT-TCAAAGAGCAAGATGCCTTTTTCCTTTCAAT
* *
1416508 GCCCGCACGAGTTGGTGGCACCCTTTAGTCCTCAAAAAGCAGAAAGCCTTTTT
319 GCCCACACGAGTTGGTGGCACCC-----T--T-------C----AG---TCTT
* * * * * * * *
1416561 CCTTTCAAAGCCCACATC-A-TTAGCGACAACCTTTAGTCCTCAAAAAGTAAGACGCCTTTTCCC
1 -CTTTCAAAGCCCACA-CAAGTTGGTGGCACCCTTTAGTCCTCAAAAAGCAGGATGCCTTTTTCC
** * * * *
1416624 TTTCAAAGCCTGCAC-AGTTGGTGGCACATTTTAGTCCTCAAAGAGCCGGATTGCCTTTTTCTTT
64 TTTCAAAGCCCACACGAGTTGGTGGCACCTTTTAGTCCTCAAAAAGCAGGA-TGCCTTTTTCGTT
* * ** * * * ** * ** *
1416688 TCAGAGCCCAGAGGGGTTGGTGGCACCCTTTACTCCTCAAAGAGGAGGATGCCTTTTTC--CTCA
128 TCAAAGCCCACACTGGTTGGCGGCACCATTTAGTCCTCACTGAGCAGGACCCCTTTTTCTTTTCA
* * * * * * *
1416751 AAGGCC-ATACGAGTTTGTGGCACCCTTTAGTCCTTAAAAAGCAGGATACCATTTTCGTTTCAAA
193 AA-GCCTACACGAGTTTGTGGCACCCTTTAGTTCTGAAAGAGCAGGATGCCTTTTTCCTTTCAAA
* * * * * * * * * * ** * *
1416815 ACCTACACGGGTTGGTGG-TCCATTTTGTCCTCAAAGAGTAGGACACCTTTTTCTTTTCAA-ACC
257 GCCCACACGAGTTTGTGGCACCCTTTAGTCTTCAAAGAGCAAGATGCCTTTTTCCTTTCAATGCC
* * *
1416878 ACACACGTGTTGTTGGCACCCTTTAGTCCTCAAAGAGCAAGACGTATTTTT
322 -CACACGAGTTGGTGGCACCC-----T--T-------C---A-G---TCTT
* * *
1416929 CCTTTCAAAGCCCACAGAAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGGCTTTTTCCT
1 -CTTTCAAAGCCCACACAAGTTGGTGGCACCCTTTAGTCCTCAAAAAGCAGGATGCCTTTTTCCT
* * * * * * *
1416994 TTCAAAGCCCGCACTAGTTGGTGGTACC-TTCAGTCCTCAAAAAGCAGGACGCATTTTTCCTTTC
65 TTCAAAGCCCACACGAGTTGGTGGCACCTTTTAGTCCTCAAAAAGCAGGATGCCTTTTTCGTTTC
* * * ** * **
1417058 AAATCCCACAC-GAGTTGGTGGCACCCTTTAGTCCTCAAAGAGTAGGA------TGCCTTTT---
130 AAAGCCCACACTG-GTTGGCGGCACCATTTAGTCCTCACTGAGCAGGACCCCTTTTTCTTTTCAA
* * * *
1417113 ----T----GA----GTGGCACCCTTTAGTCCTCAAAAAGCAAGATGCCTTTTTCCTTTCAAAGC
194 AGCCTACACGAGTTTGTGGCACCCTTTAGTTCTGAAAGAGCAGGATGCCTTTTTCCTTTCAAAGC
* * ** * *
1417166 CCACAC-A-ATTGTTGGCACCCTTTAGTCCTCAAAGAGCAAGACACCTTTTTCCTTTCAAAGCCT
259 CCACACGAGTTTG-TGGCACCCTTTAGTCTTCAAAGAGCAAGATGCCTTTTTCCTTTCAATGCCC
*
1417229 ACACGAGTTGCTGGCACCCTTTAGTCCTCAAATAGCAGGATGGCTTTTT
323 ACACGAGTTGGTGGCA--C------CCT----T--CA-G-T--C---TT
* * *
1417278 CTTTTCAAAGCCCACACAAGTTGGTGGCACCCTTTAGTCTTCAAAGAGCTA-GATGCCTTTTTCT
1 C-TTTCAAAGCCCACACAAGTTGGTGGCACCCTTTAGTCCTCAAAAAGC-AGGATGCCTTTTTCC
* * * * * *
1417342 TTTCAAAGCACACACGAGTTTGTGGGACCTTTTAGTCCTCAAAGAGCAAGATGCCTTTTTCCTTT
64 TTTCAAAGCCCACACGAGTTGGTGGCACCTTTTAGTCCTCAAAAAGCAGGATGCCTTTTTCGTTT
* * * *
1417407 CAACGCCCACAC-GAGTTGGTGGCA-C-------CCT---T---CA-G-------TCTCCTTTCA
129 CAAAGCCCACACTG-GTTGGCGGCACCATTTAGTCCTCACTGAGCAGGACCCCTTTTTCTTTTCA
* * * * * * * ** *
1417449 AAGCCCACACAAATTGGTGGCACCCTTTAGTCCTCAAAGAGCAAGACACCTTTTTCATTTCAAAG
193 AAGCCTACACGAGTTTGTGGCACCCTTTAGTTCTGAAAGAGCAGGATGCCTTTTTCCTTTCAAAG
* * * * * * * *
1417514 CCTACAGGAG-TTGTTGGCACCCTTTAGTCCTCGAAGAGTAGGACAG-CTTTTTCCTTTCAAAGC
258 CCCACACGAGTTTG-TGGCACCCTTTAGTCTTCAAAGAGCAAGA-TGCCTTTTTCCTTTCAATGC
1417577 CCACACGAGTTGGTGGCACCCTTTAGTGCTCAAAGAGCAGGATGCCTTTTT
321 CCACACGAGTTGGTGGCACCC-----T--T-------CA-G-T--C---TT
** * * * *
1417628 CATTTCAACTCCCGCATAAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGACGCCTTTTTCCT
1 C-TTTCAAAGCCCACACAAGTTGGTGGCACCCTTTAGTCCTCAAAAAGCAGGATGCCTTTTTCCT
* * * * *
1417693 TTCAAAGCCCACACGAGTTTGTGGCACCCTTTAGTCCTCAAAGAGCAAGATGCCTTTTTCCTTTC
65 TTCAAAGCCCACACGAGTTGGTGGCACCTTTTAGTCCTCAAAAAGCAGGATGCCTTTTTCGTTTC
* * *
1417758 AACGCCCACAC-GACTTGGTGGCACC-TTTCAG---T--CT-----------C-----C-TTTCA
130 AAAGCCCACACTG-GTTGGCGGCACCATTT-AGTCCTCACTGAGCAGGACCCCTTTTTCTTTTCA
* * * * * *
1417799 AAGCCCACACAAGTTGGTGGCAACCTTTAGTCCTCAAAGAGCAGGATGCCTTTTTCCTTTCAAA-
193 AAGCCTACACGAGTTTGTGGCACCCTTTAGTTCTGAAAGAGCAGGATGCCTTTTTCCTTTCAAAG
* * * * * * * * * * *
1417863 ACCACACGAGTTGGTGACACCTTTTAGTCCTCAAAAAGCAGGGTGCCTTTTTCGTTTCAA-ACCT
258 CCCACACGAGTTTGTGGCACCCTTTAGTCTTCAAAGAGCAAGATGCCTTTTTCCTTTCAATGCCC
* *
1417927 ACACGGGTTGGTGGCACCCTTTAGTC--
323 ACACGAGTTGGTGGCACCCTTCAGTCTT
*** * *** * * * *
1417953 C--TCAAAGAGTAGGATGCCTTTTTGAGTGGTACCCTTTAGTCCTCAAAGAGCAAGACGCCTTTT
1 CTTTCAAAGCCCA-CA---CAAGTTG-GTGGCACCCTTTAGTCCTCAAAAAGCAGGATGCCTTTT
* * *
1418016 TCCTTTCAACGCCCACACGAGTTGGTGGCACCCTTCAGTCTCCTTTCAAAGCCCACA-CAAGTTG
61 TCCTTTCAAAGCCCACACGAGTTGGTGGCACCTTTTAG--TCC--TCAAA----A-AGC-AG--G
* ** * * ** * * ** * * *
1418080 GTGGCACCCTTTAGTCCTCAAAGAGCAGGA-TGTTTTTTTCCTTTCAAAGCCCACATGAGTTGGT
114 AT-GC-CTTTTTCGT-TTCAAAGCCCA-CACTG-----GT--TGGC--GGCAC-CAT---TTAGT
* * *** * * *
1418144 GACACCTTTTAGTCCTCAAACAGCAGGGTGCCTTTTTCGTTTCAAA-CCTACACGGGTTGGTGGC
162 ----CC--TCA---CT----GAGCAGGACCCCTTTTTCTTTTCAAAGCCTACACGAGTTTGTGGC
* * * * * * *** *
1418208 -CTCATTTTGTCCTCAAAGAGTAGGACT-CCTTTTT-CTTT---AGTCCTCA-AAGAG--CACGA
214 AC-CCTTTAGTTCTGAAAGAGCAGGA-TGCCTTTTTCCTTTCAAAG-CC-CACACGAGTTTGTGG
** * * * * ** * * * * ** * **
1418264 C-CCCTTTTTTTTTCAAAG-CCTACATGGGTTTGTGGCACCTTTTAGTTCTGA-AAGAG--CAT-
275 CACCCTTTAGTCTTCAAAGAGCAAGATGCCTTT-T---TCCTTTCAATGCCCACACGAGTTGGTG
* *
1418323 G-A-CC-T-ATTTTT
336 GCACCCTTCAGTCTT
* * * * * * *
1418334 CCTTTCAAAGCACACACGAGTTTGTGGCACCCTTTAGTCCTCAAAGAGCAAGATTCCTTTTTCTT
1 -CTTTCAAAGCCCACACAAGTTGGTGGCACCCTTTAGTCCTCAAAAAGCAGGATGCCTTTTTCCT
* * * * * ** * *
1418399 TTCAACGCCCACACGAGTTGGTGGCACCCTTTAGCCCTCAAAGAA-CAAGACGTATTTCTCTTTT
65 TTCAAAGCCCACACGAGTTGGTGGCACCTTTTAGTCCTCAAA-AAGCAGGATGCCTTTTTCGTTT
* *** ** * * ** ** *
1418463 TAAAGCCCACAGAAGTTGATGGCACCCTTTAGTCCCCAAAGAGCAGGATGCCTTTTTCCTTTCAA
129 CAAAGCCCACACTGGTTGGCGGCACCATTTAGTCCTCACTGAGCAGGACCCCTTTTTCTTTTCAA
* * * * * * * * *
1418528 AGTCC-GCACGAGTTGGTGGCACCCTTCAGTCCTCAAAAATCAAGATGCCTTTTTGCTTTCAAAG
194 AG-CCTACACGAGTTTGTGGCACCCTTTAGTTCTGAAAGAGCAGGATGCCTTTTTCCTTTCAAAG
* * * * * ** * **
1418592 CCAACACTAGTTAGTGGCACCCTTTAGTCTTCAAAGAGTAGGATGCCTTTTTGAGTGGTACCCTT
258 CCCACACGAGTTTGTGGCACCCTTTAGTCTTCAAAGAGCAAGATGCCTTTTT-CCT--T--TCAA
* * * * ***
1418657 TAGTCCTCA-AAG-AGCAAG-ACGCCTT---T-TT
318 T-GCCCACACGAGTTGGTGGCAC-CCTTCAGTCTT
* * *
1418685 CCTTTCAATGCCCACACGAGTTGGTGGCACCCTTCAGTCTCCTTTCAAAGCCCACACAAGTTGGT
1 -CTTTCAAAGCCCACACAAGTTGGTGGCACCCTTTAG--TCC--T-----------CAA------
* * *
1418750 GGCACCCTTTAGTCCTCAAAGAGCAGGATGCTTTTTTCCTTTCAAAGCCCACATGAGTTGGTGAC
44 ---A---------------A-AGCAGGATGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGC
* * * *
1418815 ACCTTTTAGTCCTCAAAAAGCAGGGTGCCTTTTTCGTTTCAAA-CCTACACGGGTTGGTGGC-CT
90 ACCTTTTAGTCCTCAAAAAGCAGGATGCCTTTTTCGTTTCAAAGCCCACACTGGTTGGCGGCAC-
* ** * * * * *** *
1418878 CATTTTGTCCTCAAAGAGTAGGACTCCTTTTTCTTTAGTCCTCAAAGAGCACGACCCCTTTTTTA
154 CATTTAGTCCTCACTGAGCAGGACCCCTTTTTC-TT--T--TC-AA-AGC-CTA-CACGAGTTTG
** * ** * * * *
1418943 TTTCAAAGCCTACACGGGGTTGTGGCACCCTTTAGTTCTGAAAGAGCATGACCTATTTTTCCTTT
210 TGGC--ACCCTTTA----GTTCT-G-A-----AAG---AG-CAG-G-ATG-CC--TTTTTCCTTT
** * *
1419008 CAAAGCCCACACGAGTTTGTGTTACCCTTTAGTCCTCAAAGAGCAAGATTCCTTTTTCCTTTCAA
253 CAAAGCCCACACGAGTTTGTGGCACCCTTTAGTCTTCAAAGAGCAAGATGCCTTTTTCCTTTCAA
* * * *
1419073 CGCCCACACGTGTTGCTGGCACCCTTCAGTCTC
318 TGCCCACACGAGTTGGTGGCACCCTTCAGTCTT
* * *
1419106 CTTTCAAAGCCCACACAAGTTGGTGGCACCCTTTAGTCCTTAAAAACCAGGATGCCTTTTTCTTT
1 CTTTCAAAGCCCACACAAGTTGGTGGCACCCTTTAGTCCTCAAAAAGCAGGATGCCTTTTTCCTT
* * * * * * * ** *
1419171 TAAAAACCCACATGGGTTGGTGGTC-CATTTT-GTCCTCAAAGAGCAAGACACCTTTTTCTTTTC
66 TCAAAGCCCACACGAGTTGGTGG-CACCTTTTAGTCCTCAAAAAGCAGGATGCCTTTTTCGTTTC
* * *** * *** *
1419234 AAAGCCCACAC-GTGTT-GCTGGTACCCTTTAGTCCTCAAAAAGCAAGACGTATTTTTCCTTTCA
130 AAAGCCCACACTG-GTTGGC-GGCACCATTTAGTCCTCACTGAGCAGGACCCCTTTTTCTTTTCA
* * * * * * * *
1419297 AAGCCCATA-GAAGTTGGTGGCACCCTTTTGTCCTCAAAAAGTAGGATGCCTTTTTCCTTTCAAA
193 AAGCCTACACG-AGTTTGTGGCACCCTTTAGTTCTGAAAGAGCAGGATGCCTTTTTCCTTTCAAA
* * * * * *
1419361 GCCCGA-ACGAGTTGGTGGCACCCTTTAGTCCTCAAAAAGCAGGATGCCTTTTTTCTTTCAAAGC
257 GCCC-ACACGAGTTTGTGGCACCCTTTAGTCTTCAAAGAGCAAGATGCCTTTTTCCTTTCAATGC
*
1419425 CCACACGAGTTGGTGGCACCCTTTAGTC--
321 CCACACGAGTTGGTGGCACCCTTCAGTCTT
** * *** * * * * **
1419453 C--TCAAAGAGCAGGATGCCTTTTTGAGTGGCACCCGTTACTCCTCAAAGAGCAAGACACCTTTT
1 CTTTCAAAGCCCA-CA---CAAGTTG-GTGGCACCCTTTAGTCCTCAAAAAGCAGGATGCCTTTT
* * * * * ** * *
1419516 TCCTTTCAAAGCCCACAC-AGTTGGTGGAACCCTTTAGTCCTCTAAGAGCAAGACACCTTTCTCC
61 TCCTTTCAAAGCCCACACGAGTTGGTGGCACCTTTTAGTCCTCAAAAAGCAGGATGCCTTTTTCG
* * * ** * * * * * *
1419580 TTTCGAAGCCTACCCCAGTT-GCTAGCACCCTTTAGTCCTCGA-AGAGTAGGACACCTTTTTCCT
126 TTTCAAAGCCCACACTGGTTGGC-GGCACCATTTAGTCCTC-ACTGAGCAGGACCCCTTTTTCTT
* * * * *
1419643 TTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCGGGATGCCTTTTTCCTTTC
189 TTCAAAGCCTACACGAGTTTGTGGCACCCTTTAGTTCTGAAAGAGCAGGATGCCTTTTTCCTTTC
* *
1419708 AAAGCCCACACGAGTTTGTGGCACCCTTTAGTCCTCAAAGAGCAAGATGCCTTTTTCCTTTCAAC
254 AAAGCCCACACGAGTTTGTGGCACCCTTTAGTCTTCAAAGAGCAAGATGCCTTTTTCCTTTCAAT
* * * *
1419773 GCCCACACGAGTTGATGGAACCCTTTAGTCTC
319 GCCCACACGAGTTGGTGGCACCCTTCAGTCTT
* * *
1419805 CTTTTAAAACCCACACAAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTTTCCTT
1 CTTTCAAAGCCCACACAAGTTGGTGGCACCCTTTAGTCCTCAAAAAGCAGGATGCCTTTTTCCTT
* * * * * * *
1419870 TCTAAGCCCACACGAGTTCGTGGCACCATTTAGTCCTTAAAAAGTAGGATTCCTTTTTCATTTCA
66 TCAAAGCCCACACGAGTTGGTGGCACCTTTTAGTCCTCAAAAAGCAGGATGCCTTTTTCGTTTCA
* * * * * *
1419935 AAACCCACAC-GAGTTGGTGG-TCCATTTTGTCCTCCAAT-AGCAGGACACCTTTTTCTTTTCAA
131 AAGCCCACACTG-GTTGGCGGCACCATTTAGTCCT-CACTGAGCAGGACCCCTTTTTCTTTTCAA
* * * * * * * ** *
1419997 AGCCCACACGTG-TTGTTGGTACCCTTTAGTCCTCAAAGAGCAAGACGTATTTTTCCTTTCAATG
194 AGCCTACACGAGTTTG-TGGCACCCTTTAGTTCTGAAAGAGCAGGATGCCTTTTTCCTTTCAAAG
* * * ** **
1420061 CCCATA-GAAGTTGGTGGCACCCTTTAGTCCTCAAAGAGC-AGCATGCCTTTTTAAGTGGCACCC
258 CCCACACG-AGTTTGTGGCACCCTTTAGTCTTCAAAGAGCAAG-ATGCCTTTTT-CCTTTCA---
* * * * * ***
1420124 TTTTGTCCTCA-AAG-AGCAAG-ACGCCTT---T-TT
317 --ATGCCCACACGAGTTGGTGGCAC-CCTTCAGTCTT
* * * ** *
1420154 CCTTTCGAAGCCCACAC-AGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAAGACACCTTTTTCAT
1 -CTTTCAAAGCCCACACAAGTTGGTGGCACCCTTTAGTCCTCAAAAAGCAGGATGCCTTTTTCCT
* * * * * * * * ** *
1420218 TTCAAAGCCTACACGAGTTGCTGGCACCGTTTAGTCGTCGAAGAGTACGACACCTTTTTCCTTTC
65 TTCAAAGCCCACACGAGTTGGTGGCACCTTTTAGTCCTCAAAAAGCAGGATGCCTTTTTCGTTTC
* * ** *
1420283 AAAGCCCACAC-GAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGACGCCTTTTTTCTTTTCA
130 AAAGCCCACACTG-GTTGGCGGCACCATTTAGTCCTCACTGAGCAGGAC-CCCTTTTTCTTTTCA
* * * * * * *
1420347 AAGCCCACACAAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCGGGACGCCTTTTTCCTTTCAAAG
193 AAGCCTACACGAGTTTGTGGCACCCTTTAGTTCTGAAAGAGCAGGATGCCTTTTTCCTTTCAAAG
* * *
1420412 CCCACACGAGTTTGTGGCACCCTTTATTCCTCAAAGAGCAAGATGCCTTTTTCCTTTCAACGCCC
258 CCCACACGAGTTTGTGGCACCCTTTAGTCTTCAAAGAGCAAGATGCCTTTTTCCTTTCAATGCCC
* * *
1420477 ACACGAGTTGATGGCACCCTTTAGTCTC
323 ACACGAGTTGGTGGCACCCTTCAGTCTT
* *
1420505 CTTTCAAAACCCACACAAGTTGGTGGCACCCTTTAGTCCTCAAAAAGCAGCATGCCTTTTTCCTT
1 CTTTCAAAGCCCACACAAGTTGGTGGCACCCTTTAGTCCTCAAAAAGCAGGATGCCTTTTTCCTT
* * * * * * *
1420570 TCTAAGCCCACACGAGTTCGTGGCAACATTTAGTCCTTAAAAAGCAGGATTCCTTTTTCATTTCA
66 TCAAAGCCCACACGAGTTGGTGGCACCTTTTAGTCCTCAAAAAGCAGGATGCCTTTTTCGTTTCA
* * * * * ** * *
1420635 AAACCCACAC-GAGTTGGTGG-TCCGTTTTGTCCTCAAAGTGCAGGACACCTTTTTCTTTTCAAA
131 AAGCCCACACTG-GTTGGCGGCACCATTTAGTCCTCACTGAGCAGGACCCCTTTTTCTTTTCAAA
* * * * * * * **
1420698 GCCCACACGTG-TTGTTGGCACCCTTTAGTCCTCAGAGAGCAAGACGTATTTTTCCTTTCAAAGC
195 GCCTACACGAGTTTG-TGGCACCCTTTAGTTCTGAAAGAGCAGGATGCCTTTTTCCTTTCAAAGC
* * *
1420762 CCATA-GAAGTTGGTGGCACCCTTTAGT-TCTCAAAGAG-AAGGATGCCTTTTTCCTTTCAAAGC
259 CCACACG-AGTTTGTGGCACCCTTTAGTCT-TCAAAGAGCAA-GATGCCTTTTTCCTTTCAATGC
*
1420824 CCGCACGAGTTGGTGGCACCCTTTAGTCCTCAAAAAGCAGGATGCCTTTTT
321 CCACACGAGTTGGTGGCACCC-----T--T-------CA-G-T--C---TT
* * *
1420875 CCTTTCAAAGCCCACACGAA-TCGGTGGCACCCTTTAGTCCTCAAAGAGCAGCATGCC---TT--
1 -CTTTCAAAGCCCACAC-AAGTTGGTGGCACCCTTTAGTCCTCAAAAAGCAGGATGCCTTTTTCC
* * * * *
1420934 TTT----------A--A----GTGGCACCCTTTAGTCCTCAAAGAGCAAGACGCCTTTTTCCTTT
64 TTTCAAAGCCCACACGAGTTGGTGGCACCTTTTAGTCCTCAAAAAGCAGGATGCCTTTTTCGTTT
* * * * * ** * * *
1420983 CGAACCCCACAC-AGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAAGACACCTTTTTCATTTCAA
129 CAAAGCCCACACTGGTTGGCGGCACCATTTAGTCCTCACTGAGCAGGACCCCTTTTTCTTTTCAA
* ** *
1421047 AGCCTACACGAG-TTGCTGGCACCCTTTAG-TCGTCG-AAGAGTAGGACACCTTTCTCCTTTCAA
194 AGCCTACACGAGTTTG-TGGCACCCTTTAGTTC-T-GAAAGAGCAGGATGCCTTTTTCCTTTCAA
* * * ** * *
1421109 AGCCCACACGAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGCCGCCTTTTTCTTTTCAAAGC
256 AGCCCACACGAGTTTGTGGCACCCTTTAGTCTTCAAAGAGCAAGATGCCTTTTTCCTTTCAATGC
*
1421174 CCACACAAGTTGGTGGCACCCTTTAGTCCTCAAAAATCAGGATGCCTTTTT
321 CCACACGAGTTGGTGGCA--C------CCT------TCA-G-T--C---TT
* * * * *
1421225 CCTTTCAAAGCCCACACAAGTTTGTGGCACCCTTTAGTCCTTAAAGAGCAAGATGTCTTTTTCCT
1 -CTTTCAAAGCCCACACAAGTTGGTGGCACCCTTTAGTCCTCAAAAAGCAGGATGCCTTTTTCCT
** * * *
1421290 TTCAGCGCCCACACGTGTTGGTGGCACCCTTCAGTCTCCTTTCAAAGCCCACA-CAAGTTGGTGG
65 TTCAAAGCCCACACGAGTTGGTGGCACCTTTTAG--TCC--TCAAA----A-AGC-A------GG
* * * *
1421354 CACCCTTCAGTCCTCAAAGATCTGGATGCCTTTCTCCTTTCAAAGCCAACAC-GAGTTGGTGACA
114 -A----T--G----C------C----T---TTT-TCGTTTCAAAGCCCACACTG-GTTGGCGGCA
* * *** *** * * *
1421418 TCTTTTAGTCCTCAAAAAGCAGGTTGCCTTTTTCGTTTCAAA-CCTACACGGGTTGGTGGC-CTC
153 CCATTTAGTCCTCACTGAGCAGGACCCCTTTTTCTTTTCAAAGCCTACACGAGTTTGTGGCAC-C
* * * * * * * *
1421481 ATTT-TTTCCTCAAAGAGTAGTATTCCTTTTTCTTTTCAAAGCCTACACGAGTTTGTGGCACCCT
217 CTTTAGTT-CTGAAAGAGCAGGATGCCTTTTTCCTTTCAAAGCCCACACGAGTTTGTGGCACCCT
* * * * * * *
1421545 TTAGT-TCTGAAAGAGCAGGATGCCTTTTTCTTTTCAAAGCCCACACGAGTTTGTGACACCCTTT
281 TTAGTCT-TCAAAGAGCAAGATGCCTTTTTCCTTTCAATGCCCACACGAGTTGGTGGCACCCTTC
1421609 AGTC--
345 AGTCTT
* * ******* * ** ** ***
1421613 C--TCAAAG---A-GCAAGATGCCCTTTTCCTTTCAATGCC-CACACGAGTTGGTGGCACCATTC
1 CTTTCAAAGCCCACACAAGTTGGTGGCACCCTTT-AGT-CCTCA-AAAAG-CAG-GATGCC-TT-
* * *
1421671 AGTCTCCTTTCAAAGCCCACACAAGTTGGTGGCACCCTTTAGTCCTCAAAAAGCAGGATGCCTTT
59 --TTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCTTTTAGTCCTCAAAAAGCAGGATGCCTTT
* * *** * * ** **
1421736 TTCATTTCAAAGCTCACAC-GAGTTCATGGCACCCTTTAGTCCTTA-AAATGCAGGATGCCTTTT
122 TTCGTTTCAAAGCCCACACTG-GTTGGCGGCACCATTTAGTCCTCACTGA-GCAGGACCCCTTTT
* * * * * * * * * * * **
1421799 TCGTTTAAAAACCCACATTG-GTTGGTGG-TCCATTTTGTCCTCAAAGAGCAGGACACCTTTTTC
185 TCTTTTCAAAGCCTACA-CGAGTTTGTGGCACCCTTTAGTTCTGAAAGAGCAGGATGCCTTTTTC
* * * * ** *
1421862 TTTTCAAAGCCCGCAC-A-TGTTGTTGGCACCCTTTAGTCCTCAAAGAGCAAGACGTATTTTTCT
249 CTTTCAAAGCCCACACGAGT-TTG-TGGCACCCTTTAGTCTTCAAAGAGCAAGATGCCTTTTTCC
* * *
1421925 TTTCAAAGCCCACA-GAAGTTGATGGGACCCTTTAGTCCTCAAATAGCAGGATGCCTTTTT
312 TTTCAATGCCCACACG-AGTTGGT-GG---C---A--CC-C---T-TCA-G-T--C---TT
* * * *
1421985 CCTTTCGAAGCCCGCACGAGTTGGTGGCACCCTTCAGTCCTCAAAAAGCAGGATGCCTTTTTCCT
1 -CTTTCAAAGCCCACACAAGTTGGTGGCACCCTTTAGTCCTCAAAAAGCAGGATGCCTTTTTCCT
* * * *
1422050 TTCAAAGCCCACACGAGTTAGTGGCACCCTTTAGTCCTCAAAGAGCAGCATGCC---TT--TTT-
65 TTCAAAGCCCACACGAGTTGGTGGCACCTTTTAGTCCTCAAAAAGCAGGATGCCTTTTTCGTTTC
* * ** * * * *
1422109 -------A-A---G-T---GGCACCCTTCAGTCCTCAAAGAGCAAGACGCCTTTTTCCTTTCGAA
130 AAAGCCCACACTGGTTGGCGGCACCATTTAGTCCTCACTGAGCAGGACCCCTTTTTCTTTTCAAA
* * * * * ** *
1422159 GCCCACAC-AGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAAGACACCTTTTTCATTTCAAAGCC
195 GCCTACACGAGTTTGTGGCACCCTTTAGTTCTGAAAGAGCAGGATGCCTTTTTCCTTTCAAAGCC
* * * * * ** *
1422223 TACACGAG-TTGCTGGCACCCTTTAGTCGTCGAAGAGTAGGACACCTTTTTCCTTTCAAAGCCCA
260 CACACGAGTTTG-TGGCACCCTTTAGTCTTCAAAGAGCAAGATGCCTTTTTCCTTTCAATGCCCA
*
1422287 CACGAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAAGCCGCCTTTTT
324 CACGAGTTGGTGGCACCC-----T--T-------C-A---G---TCTT
*
1422335 CTTTTCAAAGCCCACACAAGTTGGTGGCACCCTTTAGTCCTCAAAAATCAGGATGCCTTTTTCCT
1 C-TTTCAAAGCCCACACAAGTTGGTGGCACCCTTTAGTCCTCAAAAAGCAGGATGCCTTTTTCCT
* * * * * * * *
1422400 TTCAAAGCCCACACAAGTTTGTGGCACCCTTTAGTCCTTAAAGAGCAAGATGTCTTTTTCCTTTC
65 TTCAAAGCCCACACGAGTTGGTGGCACCTTTTAGTCCTCAAAAAGCAGGATGCCTTTTTCGTTTC
** * * *
1422465 AGCGCCCACAC-GTGTTGGTGGCA-C-------CCT---T---CA-G-------TCTCCTTTCAA
130 AAAGCCCACACTG-GTTGGCGGCACCATTTAGTCCTCACTGAGCAGGACCCCTTTTTCTTTTCAA
* * * * * * *
1422507 AGCCCACACAAGTTGGTGGCATCCTTTAGTCCTCAATA-ATCAGGATGCCTTTTTCCTTTCAAAG
194 AGCCTACACGAGTTTGTGGCACCCTTTAGTTCTGAA-AGAGCAGGATGCCTTTTTCCTTTCAAAG
* * * **
1422571 CCCACACAAGTTTGTGGCACCCTTTAGTCCTT-AAAGTGCAAGATGTCTTTTTCCTTTCAGCGCC
258 CCCACACGAGTTTGTGGCACCCTTTAGT-CTTCAAAGAGCAAGATGCCTTTTTCCTTTCAATGCC
* *
1422635 CACACGTGTTGGTGGCACCCTTCAGTCTC
322 CACACGAGTTGGTGGCACCCTTCAGTCTT
* * *
1422664 CTTTCAAAGCCCACACAAGTTGGTGGCACCCTTTAGTCCTTAAAGAGCAGGATGCCTTTCTCCTT
1 CTTTCAAAGCCCACACAAGTTGGTGGCACCCTTTAGTCCTCAAAAAGCAGGATGCCTTTTTCCTT
* * * *
1422729 TCAAAGCCAACACGAGTTGGTGACATCTTTTAGTCCTCAAAAAGCAGGTTGCCTTTTTCGTTTCA
66 TCAAAGCCCACACGAGTTGGTGGCACCTTTTAGTCCTCAAAAAGCAGGATGCCTTTTTCGTTTCA
* * * ** ** * *
1422794 AA-CCTACACGGGTTGGTGGC-CTCATTTTTTCCTCAAAGAGTAGGACTCCTTTTTCTTTTCAAA
131 AAGCCCACACTGGTTGGCGGCAC-CATTTAGTCCTCACTGAGCAGGACCCCTTTTTCTTTTCAAA
* * *
1422857 GCCTACACGAGTTTGTGGCACCCTTTAGTTCTGAAGGAGTAGGATGCCTTTTTCTTTTCAAAGCC
195 GCCTACACGAGTTTGTGGCACCCTTTAGTTCTGAAAGAGCAGGATGCCTTTTTCCTTTCAAAGCC
** * * *
1422922 CACACGAGTTTGTTACACTCTTTAGTCCTCAAAGAGCAAGATGCCCTTTTCCTTTCAATGCCCAC
260 CACACGAGTTTGTGGCACCCTTTAGTCTTCAAAGAGCAAGATGCCTTTTTCCTTTCAATGCCCAC
* *
1422987 A-GAGTTGGTGGCACCATTCAGTCTC
325 ACGAGTTGGTGGCACCCTTCAGTCTT
*
1423012 CTTTCAAAGCCCACACAAGTTGGTGGCACCCTTTAGTCCTCAAAAAGCAGGATGCCTTTTTCATT
1 CTTTCAAAGCCCACACAAGTTGGTGGCACCCTTTAGTCCTCAAAAAGCAGGATGCCTTTTTCCTT
* * ** * * * * *
1423077 TAAAAGCTCACACGAGTTCATGGCACCCTTTATTCCTTAAAATGCAGGATGCCTTTTTCGTTTAA
66 TCAAAGCCCACACGAGTTGGTGGCACCTTTTAGTCCTCAAAAAGCAGGATGCCTTTTTCGTTTCA
* * * * * * ** *
1423142 AAACCCACATTGGTTGGTGG-TCCATTTTGTCCTGAAAGAGCAGGACACCTTTTTCTTTTCAAAG
131 AAGCCCACACTGGTTGGCGGCACCATTTAGTCCTCACTGAGCAGGACCCCTTTTTCTTTTCAAAG
** * * * * ** *
1423206 CCCGCAC-A-TGTTGTTGGCACCCTTTAGTCCTCAAAGAGCAAGACGTATTTTTCTTTTCAAAGC
196 CCTACACGAGT-TTG-TGGCACCCTTTAGTTCTGAAAGAGCAGGATGCCTTTTTCCTTTCAAAGC
* * * *
1423269 CCACA-GAAG-TTGATGGGACCCTTTAGTCCTCAAATAGCAGGATGCCTTTTTCCTTTCGAA-GC
259 CCACACG-AGTTTG-TGGCACCCTTTAGTCTTCAAAGAGCAAGATGCCTTTTTCCTTTC-AATGC
*
1423331 CCGCACGAGTTGGTGGCACCCTTCAGTCCTCAAAAAGCAGGATGCCTTTTT
321 CCACACGAGTTGGTGGCA-CC--C--T--T-------CA-G-T--C---TT
* * *
1423382 CCTTTCAAAGCCCACACGAGTTAGTGGCACCCTTCAGTCCTCAAAAAGCAGGATGCC---TT--T
1 -CTTTCAAAGCCCACACAAGTTGGTGGCACCCTTTAGTCCTCAAAAAGCAGGATGCCTTTTTCCT
* ** * * *
1423442 TT------------GA----GTGGCACCCTTTAGTCCGGAAAGAGCAAGATGCCTTTTTCCTTTC
65 TTCAAAGCCCACACGAGTTGGTGGCACCTTTTAGTCCTCAAAAAGCAGGATGCCTTTTTCGTTTC
* * * * ** * *** *
1423491 AAAGCCCACAC-AGTTGGTGGCACCCTTTAATCCTCAAAGAGCAAGACGTATTTTTCCTTTCAAA
130 AAAGCCCACACTGGTTGGCGGCACCATTTAGTCCTCACTGAGCAGGACCCCTTTTTCTTTTCAAA
* * * * *
1423555 GCCCATA-GAAGTTGGTGGCACCCTTTAGTTCTCAAAGAGAAGGATGCCTTTTTCCTTTCAAAGC
195 GCCTACACG-AGTTTGTGGCACCCTTTAGTTCTGAAAGAGCAGGATGCCTTTTTCCTTTCAAAGC
* * * * * * *
1423619 CCGCACGAGTTGGTGGCACTCTTTAGTCCTCAAAAAGCAGGATGCCTTTTTCCTTTCAAAGCCCA
259 CCACACGAGTTTGTGGCACCCTTTAGTCTTCAAAGAGCAAGATGCCTTTTTCCTTTCAATGCCCA
* *
1423684 CACGAATTGGTGGCACCCTTTAGTC--
324 CACGAGTTGGTGGCACCCTTCAGTCTT
** *** * * **
1423709 C--TCAAAGAGCAGCATGCCTTTTTAAGTGGCACCCTTTAGTCCTCAAAGAGCAGGCCGCCTTTT
1 CTTTCAAAGCCCA-CA---CAAGTT-GGTGGCACCCTTTAGTCCTCAAAAAGCAGGATGCCTTTT
* * * * *
1423772 TCTTTTCAAATCCCACACAAGTTGGTGGCATCC-TTTAGTCCTCAATAATCAGGATGCCTTTTTC
61 TCCTTTCAAAGCCCACACGAGTTGGTGGCA-CCTTTTAGTCCTCAAAAAGCAGGATGCCTTTTTC
* ** * * *
1423836 CTTTCAAAGCCCACACAAGTTTGTGGCACCCTTTAGTCCT
125 GTTTCAAAGCCCACACTGGTTGGCGGCACCATTTAGTCCT
1423876 TAAAGTGCAA
Statistics
Matches: 10224, Mismatches: 2003, Indels: 2365
0.70 0.14 0.16
Matches are distributed among these distances:
317 4 0.00
318 110 0.01
319 3 0.00
320 7 0.00
321 2 0.00
322 16 0.00
323 20 0.00
324 16 0.00
325 4 0.00
326 32 0.00
327 100 0.01
328 229 0.02
329 38 0.00
330 1 0.00
331 6 0.00
332 8 0.00
333 1 0.00
334 16 0.00
335 16 0.00
336 5 0.00
338 2 0.00
339 28 0.00
340 100 0.01
341 44 0.00
342 47 0.00
343 47 0.00
344 26 0.00
345 42 0.00
346 48 0.00
347 81 0.01
348 409 0.04
349 2378 0.23
350 2457 0.24
351 608 0.06
352 24 0.00
353 34 0.00
354 25 0.00
355 24 0.00
356 12 0.00
357 16 0.00
358 10 0.00
359 2 0.00
360 1 0.00
362 6 0.00
363 16 0.00
364 13 0.00
365 15 0.00
366 18 0.00
367 13 0.00
368 154 0.02
369 144 0.01
370 281 0.03
371 664 0.06
372 45 0.00
373 11 0.00
374 12 0.00
375 30 0.00
376 8 0.00
377 10 0.00
378 5 0.00
379 130 0.01
380 516 0.05
381 70 0.01
382 22 0.00
383 32 0.00
384 13 0.00
385 27 0.00
386 27 0.00
387 16 0.00
388 43 0.00
389 44 0.00
390 42 0.00
391 68 0.01
392 1 0.00
393 7 0.00
395 4 0.00
396 9 0.00
397 7 0.00
398 4 0.00
399 6 0.00
401 9 0.00
403 6 0.00
405 10 0.00
406 12 0.00
407 5 0.00
408 2 0.00
409 1 0.00
410 7 0.00
411 370 0.04
412 49 0.00
415 5 0.00
416 4 0.00
417 8 0.00
418 9 0.00
419 2 0.00
420 35 0.00
421 58 0.01
ACGTcount: A:0.24, C:0.27, G:0.19, T:0.30
Consensus pattern (350 bp):
CTTTCAAAGCCCACACAAGTTGGTGGCACCCTTTAGTCCTCAAAAAGCAGGATGCCTTTTTCCTT
TCAAAGCCCACACGAGTTGGTGGCACCTTTTAGTCCTCAAAAAGCAGGATGCCTTTTTCGTTTCA
AAGCCCACACTGGTTGGCGGCACCATTTAGTCCTCACTGAGCAGGACCCCTTTTTCTTTTCAAAG
CCTACACGAGTTTGTGGCACCCTTTAGTTCTGAAAGAGCAGGATGCCTTTTTCCTTTCAAAGCCC
ACACGAGTTTGTGGCACCCTTTAGTCTTCAAAGAGCAAGATGCCTTTTTCCTTTCAATGCCCACA
CGAGTTGGTGGCACCCTTCAGTCTT
Found at i:1410884 original size:473 final size:469
Alignment explanation
Indices: 1409673--1431904 Score: 2533
Period size: 473 Copynumber: 46.7 Consensus size: 469
1409663 ACTCCTTTTT
* * ** * * *
1409673 CTTTAGTCCTCAAAGAGCACGACCCTTTTTTTTTTTCAAAGCCTACACGGGTTTGTGGCACCTTT
1 CTTTAGTCCTCAAAGAGCAGGACCCCTTTTTCCTTTCAAAGCCCACACGAGTTTGTGGCACCCTT
* * * *
1409738 TAGTTCTGAAAGAGCATGA-CCCATTTTTCCTTTTAAAACCCACACGAGTTTGTGGCACCCTTTA
66 TAGTTCTGAAAGAGCAGGATGCC-TTTTTCCTTTCAAAGCCCACACGAGTTTGTGGCACCCTTTA
* * * *
1409802 GTCCTCAAAGAGCAAGATTCCTTTTTCTTTTCAATGCCCACACGAGTTGGTGGCACCCTTCAGTC
130 GTCTTCAAAGAGCAAGATGCCCTTTTCCTTTCAATGCCCACACGAGTTGGTGGCACCCTTCAGTC
1409867 TCTTTTCAAAGCCCACACAAGTTGGTAGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTTTCC
195 TC-TTTCAAAGCCCACACAAGTTGGT-GCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTTTCC
* * * *
1409932 TTTCTAAGCCCACACGAGTTCATGGCACCATTTAGTCCTTAAAAAGCAAGATTCCTTTTTCATTT
258 TTTCAAAGCCCACACGAGTTCATGGCACCCTTTAGTCCTTAAAAAGCAGGATGCCTTTTTCATTT
1409997 CAAAACCCACACGAGTTGGTGGTCCATTTTGTCCTCAAAGAGCAGGACACCTTTTTCTTTTCAAA
323 CAAAACCCACACGAGTTGGTGGTCCATTTTGTCCTCAAAGAGCAGGACACCTTTTTCTTTTCAAA
* * * *
1410062 GCCCACACGTGTTGTTGGTACCCTTTAGTCCTCAAAGAGCAAGACGT-ATTTTTCCTTTCAAAGC
388 GCCCACACGTGTTGGTGG--CCCTTTAGTCCTCAAAGAGCAGGAC-TCCTTTTTCTTTTCAAAGC
* *
1410126 CCATAGAAGTTGGTGGCACC
450 CCACACAAGTTGGTGGCACC
* ** * * *
1410146 CTTTAGTCCTAAAAGAGCAGGATGCCTCTTTCCTTTCAAAGCCCGCACGAGTTAGTGGCACCCTT
1 CTTTAGTCCTCAAAGAGCAGGACCCCTTTTTCCTTTCAAAGCCCACACGAGTTTGTGGCACCCTT
* * * * *
1410211 TAGTCCTCAAAAAACAGGATGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAG
66 TAGTTCTGAAAGAGCAGGATGCCTTTTTCCTTTCAAAGCCCACACGAGTTTGTGGCACCCTTTAG
* * * * * * *
1410276 T-TCTGAAAGAGCAGGATG-CCTTTCCCCTTTCAAAGCCCACACAAGTTTGTGGCACCCTTTAGT
131 TCT-TCAAAGAGCAAGATGCCCTTT-TCCTTTCAATGCCCACACGAGTTGGTGGCACCCTTCAGT
** * ** * * * **
1410339 C-C--TCAAAGAGCA-ACATGCCTT--T--TTCCTTTCAG-CGCCCACACGTGTTGG-TGGCACC
194 CTCTTTCAAAGCCCACACAAG--TTGGTGCACCCTTT-AGTC-CTCA-AAGAGCAGGAT-G---C
* * ** * *
1410394 CTTCAGTCTCCTTTCAAAGCCCACACAAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGC
250 CTT---TTTCCTTTCAAAGCCCACACGAGTTCATGGCACCCTTTAGTCCTTAAAAAGCAGGATGC
* * * * * * ***
1410459 CTTTTTCCTTTCAAAGCCAACACGAGTTAGT-G-ACATCTTTTAGTCCTCAAAAAGCAGGTTGCC
312 CTTTTTCATTTCAAAACCCACACGAGTTGGTGGTCCA--TTTT-GTCCTCAAAGAGCAGGACACC
* * * * ** *
1410522 TTTTTCGTTTCAAA-CCTACATGGGTTGGTGGCCTCATTTTTTCCTCAAAGAGTAGGACTCCTTT
374 TTTTTCTTTTCAAAGCCCACACGTGTTGGTGGCC-C-TTTAGTCCTCAAAGAGCAGGACTCCTTT
* ** *
1410586 TTCTTTTCAAAGCCTACACTTGTTGGCGGCACC
437 TTCTTTTCAAAGCCCACACAAGTTGGTGGCACC
** * *
1410619 CTTTAGTCCTCACTGAGCAGGACCCCTTTTTCTTTTCAAAGCCTACACGAGTTTGTGGCACCCTT
1 CTTTAGTCCTCAAAGAGCAGGACCCCTTTTTCCTTTCAAAGCCCACACGAGTTTGTGGCACCCTT
*
1410684 TAGTTCTGAAAGAGCAGGATGCCTTTTTCCTTTCAAAGCCCACACAAGTTTGTGGCACCCTTTAG
66 TAGTTCTGAAAGAGCAGGATGCCTTTTTCCTTTCAAAGCCCACACGAGTTTGTGGCACCCTTTAG
* **
1410749 TCTTCAAAGAGCAAGATGCCCTTTTCCTTTCAATGTCCACACGAGTTGGTGGCACTATTCAGTCT
131 TCTTCAAAGAGCAAGATGCCCTTTTCCTTTCAATGCCCACACGAGTTGGTGGCACCCTTCAGTC-
*
1410814 TCTTTCAAAGCCCACACAAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTTTCAT
195 TCTTTCAAAGCCCACACAAGTTGGT-GCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTTTCCT
* *
1410879 TTCAAAGCCCACACGAGTTCATGGCACCCTTTAGTCCTTAAAAAGCAGGATGCCTTTTTCGTTTA
259 TTCAAAGCCCACACGAGTTCATGGCACCCTTTAGTCCTTAAAAAGCAGGATGCCTTTTTCATTTC
* * * *
1410944 AAAACCCGCATGGGTTGGTGGTCCATTTTGTCCTCAAAGAGCAGGGCACCTTTTTCTTTTCAAAG
324 AAAACCCACACGAGTTGGTGGTCCATTTTGTCCTCAAAGAGCAGGACACCTTTTTCTTTTCAAAG
*
1411009 CCCACACATGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGA-TGCCTTTTTCTTTTCAAAGCC
389 CCCACACGTGTTGGTGG--CCCTTTAGTCCTCAAAGAGCAGGACT-CCTTTTTCTTTTCAAAGCC
*
1411073 CACACGAGTTGGTGGCACC
451 CACACAAGTTGGTGGCACC
* * * ** * *
1411092 TTTTAGTTCTGAAAGAGCAGGATGCCTTTTTCCTTTCAAAGCCCACACAAGTTTGCGGCACCC--
1 CTTTAGTCCTCAAAGAGCAGGACCCCTTTTTCCTTTCAAAGCCCACACGAGTTTGTGGCACCCTT
* * *
1411155 ---TT-T--------A-G-T--C----TCCTTTCAAAGCCCACACAAGTTGGTGGCACCCATTAG
66 TAGTTCTGAAAGAGCAGGATGCCTTTTTCCTTTCAAAGCCCACACGAGTTTGTGGCACCCTTTAG
* * ** * * * *
1411200 TCTTCAAAAAGCAGGATGCTTTTTTCCTTTCAAAGCCCACACGAGTTGGTGACACCTTTTAGTC-
131 TCTTCAAAGAGCAAGATGCCCTTTTCCTTTCAATGCCCACACGAGTTGGTGGCACCCTTCAGTCT
** * * * * * *
1411264 C--TCAAA----A-AGC-AG--GGTGC-CTTTTTCGT-TTCAAACCTACTCGGGTTGGTGGCCTC
196 CTTTCAAAGCCCACA-CAAGTTGGTGCACCCTTTAGTCCTCAAA--GA-GC-AG--GAT-G-C-C
* * * * **** * * *
1411317 ATTTTGTCC--TCAAAG---AGTAGGA-CTCCT--TTTTCTTTAGT-CTTCAAAGAGCACGA-CC
251 -TTTT-TCCTTTCAAAGCCCA-CACGAGTTCATGGCACCCTTTAGTCCTT-AAAAAGCAGGATGC
** * * * * * * * *
1411372 CTTTTTTTTTTTCAAAGCCTACACGGGTTTGTGG-CACCTTTTAGTTCTGAAAGAGCATGAC-CC
312 C-TTTTTCATTTCAAAACCCACACGAGTTGGTGGTC-CATTTT-GTCCTCAAAGAGCAGGACACC
* * * *
1411435 ATTTTTCCTTTT-AAAGCCCACACGAGTTTGTGGCACCCTTTAGTCCTCAAAGAGCAAGATTCCT
374 -TTTTT-CTTTTCAAAGCCCACACGTGTTGGTGG--CCCTTTAGTCCTCAAAGAGCAGGACTCCT
* *
1411499 TTTTCTTTTCAATGCCCACACGAGTTGGTGGCACCCTTCAGTC
435 TTTTCTTTTCAAAGCCCACACAAGTTGGTGGCA-----C---C
**
1411542 TCTTTTCAAAGCCCACACAAGTTGGTAGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTTTCC
1 -C-TTT-------------A----GT-----CC--------TCAAAGAGCAGGACCCCTTTTTCC
* *
1411607 TTTCAAAGCCCACACGAGTTGGTGGCACCTTTTAGTTCTGAAAGAGCAGGATGCCTTTTTCCTTT
34 TTTCAAAGCCCACACGAGTTTGTGGCACCCTTTAGTTCTGAAAGAGCAGGATGCCTTTTTCCTTT
* * * * *******
1411672 CAAAGCCCACACAAGTTTGCGGCACCCTTTAGTCTCCTTTCAAAGCCCACACAAGTTGGTGGCAC
99 CAAAGCCCACACGAGTTTGTGGCACCCTTTAG--T-C-TTCAAAG---A-GCAAGATGCCCTTTT
* * ** ** *** *
1411737 CCATT-AGT-CCTCA-AAAAGCAGGAT-G----CTTTTTTC-CTTTCAAAGCCCACACGAGTTGG
156 CCTTTCAATGCC-CACACGAGTTGG-TGGCACCCTTCAGTCTCTTTCAAAGCCCACACAAGTTGG
* * * * * * * **
1411793 TGACACCTTTTAGTCCTCAAAAAGCAGGGTGCCTTTTTCGTTTCAAA-CCTACTCGGGTTGGTGG
219 TG-CACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTTTCCTTTCAAAGCCCACACGAGTTCATGG
* * * *
1411857 C-CTCATTTTA-TCCTCAAAGAGTAGGACT-CC---TT--TTT-----------C----T--T--
283 CAC-C-CTTTAGTCCTTAAAAAGCAGGA-TGCCTTTTTCATTTCAAAACCCACACGAGTTGGTGG
* * * * * * *
1411895 T--A----GTCCTCAAAGAGCACGACCCTTTTTTTTTTTCAAAGCCTACACGGGTTTGTGGCACC
345 TCCATTTTGTCCTCAAAGAGCAGGACACCTTTTTCTTTTCAAAGCCCACACGTGTTGGTGGC-CC
* * * * * *
1411954 TTTTAGTTCTGAAAGAGCATGAC-CCATTTTTCCTTTT-AAAACCCACACGAGTTTGTGGCACC
409 -TTTAGTCCTCAAAGAGCAGGACTCC-TTTTT-CTTTTCAAAGCCCACACAAGTTGGTGGCACC
* ** * * *
1412016 CTTTAGTCCTCAAAGAGCAAGATTCCTTTTTCTTTTCAATGCCCACACGAGTTGGTGGCACCCTT
1 CTTTAGTCCTCAAAGAGCAGGACCCCTTTTTCCTTTCAAAGCCCACACGAGTTTGTGGCA-----
1412081 CAGTCTCTTTTCAAAGCCCACACAAGTTGGTAGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTT
61 C---C-C-TTT-------------AG-T--T------C--T-G-----AAAGAGCAGGATGCCTT
* ** * * * *
1412146 TTTCCTTTCTAAGCCCACACGAGTTCATGGCACCATTTAGTCCTT-AAAAAGCAAGATTCCTTTT
91 TTTCCTTTCAAAGCCCACACGAGTTTGTGGCACCCTTTAGT-CTTCAAAGAGCAAGATGCCCTTT
* ** ** *
1412210 TCATTTCAAAACCCACACGAGTTGGTGGTCCATTTTGTCCTCAAAGAGCAGGACACCTTTTTCTT
155 TCCTTTCAATGCCCACACGAGTTGGTGG--CA------CC-C----TTCA-G-------TCTC-T
** * * * * **
1412275 TTCAAAGCCCACACGTGTTGTTGGTACCCTTTAGTCCTCAAAGAGCAAGACGTATTTTTCCTTTC
198 TTCAAAGCCCACACAAGTTGGT-GCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTTTCCTTTC
* ** * * * *
1412340 AAAGCCCATA-GAAGTTGGTGGCACCCTTTAGTCCTGAAAGAGCAGGATGCCTCTTTCCTTTCAA
262 AAAGCCCACACG-AGTTCATGGCACCCTTTAGTCCTTAAAAAGCAGGATGCCTTTTTCATTTCAA
* * * * * * * ** *
1412404 AGCCCGCACGAGTTAGTGGCACCCTTTAGTCCTCAAAAAGCAGGATGCCTTTTTCCTTTCAAAGC
326 AACCCACACGAGTTGGTGG-TCCATTTTGTCCTCAAAGAGCAGGACACCTTTTTCTTTTCAAAGC
* * * ** *
1412469 CCACACGAGTTGGTGGCACCCTTTAGTTCTGAAAGAGCAGGA-TGCCTTTCCCCTTTCAAAGCCC
390 CCACACGTGTTGGTGG--CCCTTTAGTCCTCAAAGAGCAGGACT-CCTTTTTCTTTTCAAAGCCC
*
1412533 ACACAAGTTTGTGGCACC
452 ACACAAGTTGGTGGCACC
** ** ** * *
1412551 CTTTAGTCCTCAAAGAGCAACATGCCTTTTTCCTTTCAGCGCCCACACGTGTTGGTGGCACCCTT
1 CTTTAGTCCTCAAAGAGCAGGACCCCTTTTTCCTTTCAAAGCCCACACGAGTTTGTGG-------
1412616 CAGTCTCCTTTCAAAGCCCACACAAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTT
59 CA--C-CCTTT-------------AG-T--T------C--T-G-----AAAGAGCAGGATGCCTT
* * * * * * * * * *
1412681 TTTCCTTTCAAAGCCAACACGAGTTAGTGACATCTTTTAGTCCTCAAAAAGCAGGTTGCCTTTTT
91 TTTCCTTTCAAAGCCCACACGAGTTTGTGGCACCCTTTAGTCTTCAAAGAGCAAGATGCCCTTTT
* * * * * * * *
1412746 CGTTTCAA-ACCTACATGGGTTGGTGG---CC-TCA-T-TTTTTC----CTCA-A-AGAG-TAG-
156 CCTTTCAATGCCCACACGAGTTGGTGGCACCCTTCAGTCTCTTTCAAAGCCCACACA-AGTTGGT
**** * * **
1412796 G-ACTCCTTT--T--TC--TTTTCA--AAGCC---TACAC-TT----G-----TTG-G--C--GG
220 GCAC-CCTTTAGTCCTCAAAGAGCAGGATGCCTTTTTC-CTTTCAAAGCCCACACGAGTTCATGG
* *** ** * * * * *
1412834 CACCCTTTAGTCCTCACTGAGCAGGACCCCTTTTTCTTTTCAAAGCCTACACGAGTTTGTGGCAC
283 CACCCTTTAGTCCTTAAAAAGCAGGATGCCTTTTTCATTTCAAAACCCACACGAGTTGGTGG-TC
* * * * ** * ** *
1412899 CCTTTAGTTCTGAAAGAGCAGGATGCCTTTTTCCTTTCAAAGCCCACACAAGTTTGTGGCACCCT
347 CATTTTGTCCTCAAAGAGCAGGACACCTTTTTCTTTTCAAAGCCCACACGTGTTGGTGG--CCCT
* * * * * * *
1412964 TTAGTCTTCAAAGAGCAAGA-TGCCCTTTTCCTTTCAATGTCCACACGAGTTGGTGGCA--
410 TTAGTCCTCAAAGAGCAGGACT-CCTTTTTCTTTTCAAAGCCCACACAAGTTGGTGGCACC
* * *
1413022 C--TA-T--T-------CA-G------TCTT-CTTTCAAAGCCCACACAAGTTGGTGGCACCCTT
1 CTTTAGTCCTCAAAGAGCAGGACCCCTTTTTCCTTTCAAAGCCCACACGAGTTTGTGGCACCCTT
* * * **
1413067 TAGTCCTCAAAGAGCAGGATGCCTTTTTCATTTCAAAGCCCACACGAGTTCATGGCACCCTTTAG
66 TAGTTCTGAAAGAGCAGGATGCCTTTTTCCTTTCAAAGCCCACACGAGTTTGTGGCACCCTTTAG
* * * * * ** * * *
1413132 TCCTT-AAAAAGCAGGATGCCTTTTTCGTTTAAAAACCCGCATGGGTTGGTGGTCCATTTTGTCC
131 T-CTTCAAAGAGCAAGATGCCCTTTTCCTTTCAATGCCCACACGAGTTGGTGG--CA------CC
** * * *
1413196 TCAAAGAGCAGGGCACCTTTTTCTTTTCAAAGCCCACACATGTTGTTGGCACCCTTTAGTCCTCA
187 -C----TTCA--G------TCTC-TTTCAAAGCCCACACAAGTTGGT-GCACCCTTTAGTCCTCA
* ** * * * **
1413261 AAGAGCAAGATGTATTTCTCTTTTCAAAGCCCACA-GAAGTTGATGGCACCCTTTAGTCCCCAAA
237 AAGAGCAGGATGCCTTTTTCCTTTCAAAGCCCACACG-AGTTCATGGCACCCTTTAGTCCTTAAA
* ** * * * ** * ** * * *
1413325 GAGCAGGATGCCTTTTTCCCTTCAAAGCCCGCACGAGTTTGTGAAACCCTTCAGCCCTCAAAAAT
301 AAGCAGGATGCCTTTTTCATTTCAAAACCCACACGAGTTGGTG-GTCCATTTTGTCCTCAAAGAG
** * * *
1413390 CAGGATGCCTTTTTCCTTTCAAAGCCCACAC-TAGTTAGTGGCACCCTTTAGTCCTCAAAGAGTA
365 CAGGACACCTTTTTCTTTTCAAAGCCCACACGT-GTTGGTGG--CCCTTTAGTCCTCAAAGAGCA
1413454 GGA-TGCC----T-TTTT----G--------AG-TGGT---ACC
427 GGACT-CCTTTTTCTTTTCAAAGCCCACACAAGTTGGTGGCACC
* * * **
1413476 CTTTAGTCCTGAAAGAGCAAGACGCCTTTTTCCTTTCAAAGCCCACAC-AGTCGGTGGCACCCTT
1 CTTTAGTCCTCAAAGAGCAGGACCCCTTTTTCCTTTCAAAGCCCACACGAGTTTGTGGCACCCTT
* * * * * ** * * *
1413540 CAGTCCTTAAGGAGTAGGACACTTTTTTCCATTCAAAGCCCACACGAGTTGGTGGCACCCTTTAG
66 TAGTTCTGAAAGAGCAGGATGCCTTTTTCCTTTCAAAGCCCACACGAGTTTGTGGCACCCTTTAG
* * * * *
1413605 TCCTCAAAGAGCAAGACG-TCTTTTCCTTTTCAAAGCCCACACAAGTTGGTGGCACCCTTTAGTC
131 TCTTCAAAGAGCAAGATGCCCTTTTCC-TTTCAATGCCCACACGAGTTGGTGGCACCC-----T-
* * ** *
1413669 CTCAAAGAGCAGAACGCCTTTTTCCTTTCAAAGCCCACACGAGTTTATGGCACCCTTTAGTCCTT
189 -T-------C---A-G----TCT-CTTTCAAAGCCCACACAAGTTGGT-GCACCCTTTAGTCCTC
* * * **
1413734 AAAGAGCAGGATGCCATTTTCCTTTCAATGCCCATACGAGTTGGTGGCA--C------CCTT---
236 AAAGAGCAGGATGCCTTTTTCCTTTCAAAGCCCACACGAGTTCATGGCACCCTTTAGTCCTTAAA
* * * * * * *
1413788 ---C-GG-T--C----TCCTTTCAAAGCCCACACTAGTTGGTGGCACCCTTCTGTCCCCAAAGAG
301 AAGCAGGATGCCTTTTTCATTTCAAAACCCACACGAGTTGGTGG-TCCATTTTGTCCTCAAAGAG
** * * * ** *
1413842 CAGGATGCCTTTTTCCTTTAAAAGCCCACACGAGTTGGTGGCACCTTTTAGTCCTTGAAGAGCAA
365 CAGGACACCTTTTTCTTTTCAAAGCCCACACGTGTTGGTGGC-CC-TTTAGTCCTCAAAGAGCAG
*
1413907 GA-TGCCTTTTTCCTTTCAAAGCCCACACAA-TTGGTGGCACC
428 GACT-CCTTTTTCTTTTCAAAGCCCACACAAGTTGGTGGCACC
* ** * * *
1413948 CTTTAGTCCTCAAAGAGCTGGATGCCTTTTTCTTTTCAAAGCCCACACGACTTTGTGGGACCCTT
1 CTTTAGTCCTCAAAGAGCAGGACCCCTTTTTCCTTTCAAAGCCCACACGAGTTTGTGGCACCCTT
* * * * * * * * * *
1414013 TAGTCCTCAAAGAGGAAGATGCCTTTTT-CATTCAACGCCCACACGAGTTGGGGGCACCATTCAG
66 TAGTTCTGAAAGAGCAGGATGCCTTTTTCCTTTCAAAGCCCACACGAGTTTGTGGCACCCTTTAG
* * ******* * * * **
1414077 TCTCCTTTCAAAGCCCACACAAGTTGGTGGCAGCCATT-AGT-CCTCA-AAGAGCAGGAT-G---
131 --T-C-TTCAAAG---A-GCAAGATGCCCTTTTCCTTTCAATGCC-CACACGAGTTGG-TGGCAC
*** * * *
1414135 -CTTTTTTC-CTTTCAAAGCCCACACAAGTTGGTGACACCTTTTAGTCCTCAAAAAGCAGGGTGC
186 CCTTCAGTCTCTTTCAAAGCCCACACAAGTTGGTG-CACCCTTTAGTCCTCAAAGAGCAGGATGC
* * * ** * * * * *
1414198 CTTTTTCGTTTCAAA-CCTACACGGGTTGGTGGC-CTCATTTTGTCCTCAAAGAGTAGGACT-CC
250 CTTTTTCCTTTCAAAGCCCACACGAGTTCATGGCAC-CCTTTAGTCCTTAAAAAGCAGGA-TGCC
* * *** * * *
1414260 TTTTTCTTTTGTCCTCAAAGAGCAGGACCCCTTTTAATT-TTCAAAGCCTACACGAGTTTGTGGC
313 TTTTTC--AT-T--TCAAA-A-C----CCAC-ACGAGTTGGT----G-GT-C-C-A-TTT-T-G-
* ** * * *
1414324 ACCCTTTAGTTCTGAAAGAGCAGGATGCCTTTTTCCTTTCAAAGCCCACACGAGTTTGTGGCACC
354 -TCC--T----C--AAAGAGCAGGACACCTTTTTCTTTTCAAAGCCCACACGTGTTGGTGG--CC
* * ** ** * *
1414389 CTTTAGTCCTCAAAGAGCAAGA-TGCCCTTTTCCATTCAATTCCCACACGAGTTGGTGGCA-A
408 CTTTAGTCCTCAAAGAGCAGGACT-CCTTTTTCTTTTCAAAGCCCACACAAGTTGGTGGCACC
* * *
1414450 C---A-T--T-------CA-G-------TCTCCTTTCAAAGCCCACACAAGTTGGTGGCACCCTT
1 CTTTAGTCCTCAAAGAGCAGGACCCCTTTTTCCTTTCAAAGCCCACACGAGTTTGTGGCACCCTT
* * ** * ** *
1414494 TAGTCCTCAAAGAGCAGGATGCCTTTTTGATTTCAAAGCTCACACGAGTTCATGGCACCCCTTAG
66 TAGTTCTGAAAGAGCAGGATGCCTTTTTCCTTTCAAAGCCCACACGAGTTTGTGGCACCCTTTAG
* * * * * * ** * *
1414559 TCCTT-AAAAAACAGGATGCCTTTTTCGTTTAAAAACCCACATGTGTTGGTAGTGCATTTTGTCC
131 T-CTTCAAAGAGCAAGATGCCCTTTTCCTTTCAATGCCCACACGAGTTGGT-G-GCA------CC
** * * *
1414623 TCAAAGAGCAGGACACCTTTTTCTTTTCAAAGCCCACACATGTTGTTGGCACCCTTTAGTCCTCA
187 -C----TTCA-G-------TCTC-TTTCAAAGCCCACACAAGTTGGT-GCACCCTTTAGTCCTCA
* * ** * *
1414688 AAGAGCAAGACGTATTTTTCTTTTCAAAGCCCACA-GAAGTTGATGGCACCCTTTAGT-CTTCAA
237 AAGAGCAGGATGCCTTTTTCCTTTCAAAGCCCACACG-AGTTCATGGCACCCTTTAGTCCTT-AA
* * * * * * ** *
1414751 AGAGCAGGATGCCTTTTTCCTTTCAAAGCCCAAACGAGTTGGTGGCACCCTTCAGTCCTCAAAAA
300 AAAGCAGGATGCCTTTTTCATTTCAAAACCCACACGAGTTGGTGG-TCCATTTTGTCCTCAAAGA
** ** * * * *
1414816 AAAGGATGCCTTTTTCCTTTCAAAGCCCACACGAGTTAGTGGCACCCTTTAGTCCTCAAAAAGCA
364 GCAGGACACCTTTTTCTTTTCAAAGCCCACACGTGTTGGTGG--CCCTTTAGTCCTCAAAGAGCA
1414881 GGA-TGCC----T-TTTT----G--------A----GTGGCACC
427 GGACT-CCTTTTTCTTTTCAAAGCCCACACAAGTTGGTGGCACC
** * * * * * * *
1414903 CTTTAGTCCGGAAAGAGGAAGACGCCTGTTTCCTTTCAAAGGCCACAC-AGTTGGTGGCACCATT
1 CTTTAGTCCTCAAAGAGCAGGACCCCTTTTTCCTTTCAAAGCCCACACGAGTTTGTGGCACCCTT
* * * * * ** * * *
1414967 TAATCCTCAAAGAGAAAGACACCTTTTTCCTTTCAAAGCCTACATGAG-TTGCTGGCACCCATTA
66 TAGTTCTGAAAGAGCAGGATGCCTTTTTCCTTTCAAAGCCCACACGAGTTTG-TGGCACCCTTTA
* * * * * * * *
1415031 GTCCTCGAAGAGCAGGATGCCTTTTTTTCTTTCAAAGCCCACACGAGTTGGTGGCACCTTTTAGT
130 GTCTTCAAAGAGCAAGATGCC-CTTTTCCTTTCAATGCCCACACGAGTTGGTGGCACCCTTCAGT
*** * *** ** * *
1415096 C-C--TCAAAGAGTAGGTCGCCTTTTTCTTTTCAAAGCTCATACATGTTGGTGGCACCCTTTAGT
194 CTCTTTCAAAGCCCA---C-ACAAGTT-GGTGC--A-C-C---C-T-TTAGT-----CC--T---
* * * * *
1415158 CCTCAAAAATCAGGATGCCTTTTTGCTTTCAAAGCCAACACTAGTT-AGTGGCACCCTTTAGTCC
235 ---CAAAGAGCAGGATGCCTTTTTCCTTTCAAAGCCCACACGAGTTCA-TGGCACCCTTTAGTCC
* * * * * *
1415222 TCAAAGAGTAGGATGCC---TT--TTT------------GAG-TGGT--ACCCTTTAGTCCTCAA
296 TTAAAAAGCAGGATGCCTTTTTCATTTCAAAACCCACACGAGTTGGTGGTCCATTTTGTCCTCAA
* * * * * *
1415267 AGACCAAGACACCTTTTTCCTTTCAAAGCCCACA--TAGTCGGTGGTACCCTTCAGTCCTTAAAG
361 AGAGCAGGACACCTTTTTCTTTTCAAAGCCCACACGT-GTTGGTGG--CCCTTTAGTCCTCAAAG
* * * * * *
1415330 AGTAGGACACTTTTTTCCTTTCAAAGCTCACACGAGTTGGTGGCACC
423 AGCAGGACTCCTTTTTCTTTTCAAAGCCCACACAAGTTGGTGGCACC
* * * *
1415377 CTTTAGTCCTCAAAGAGCAGGACGCCTTTTTCTTTTCAAAGCCCACACAAGTTGGTGGCACCCTT
1 CTTTAGTCCTCAAAGAGCAGGACCCCTTTTTCCTTTCAAAGCCCACACGAGTTTGTGGCACCCTT
* * * *
1415442 TAGTCCTCAAAGAGCAAGATGCCTTTTTCCTTTCAAAGCCCACACGAGTTTGTGGCACCCCTTAG
66 TAGTTCTGAAAGAGCAGGATGCCTTTTTCCTTTCAAAGCCCACACGAGTTTGTGGCACCCTTTAG
* * * * *
1415507 TCCTT-AAAGAGTAGGATGCCATTTTCCTTTCAATGCCCACACGAGTTGGTGGCATCCTTCGGTC
131 T-CTTCAAAGAGCAAGATGCCCTTTTCCTTTCAATGCCCACACGAGTTGGTGGCACCCTTCAGTC
* * *
1415571 TCCTTTCAAAGCCCATACTAGTTGGTGGCACCCTTCT-GTCCCCAAAGAGCAGGATGCCTTTTTC
195 T-CTTTCAAAGCCCACACAAGTTGGT-GCACCCTT-TAGTCCTCAAAGAGCAGGATGCCTTTTTC
* ** * * * * * * *
1415635 CTTTAAAAGCCCACACGAGTTGGTGTCACCTTTTAGTCGTTGAAGAGCACGATGCCTTTTTCCTT
257 CTTTCAAAGCCCACACGAGTTCATGGCACCCTTTAGTCCTTAAAAAGCAGGATGCCTTTTTCATT
* * * * *
1415700 TCAAAGCCCACAC-AGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGACACCTTTTTCCTTTCA
322 TCAAAACCCACACGAGTTGGTGG-TCCATTTTGTCCTCAAAGAGCAGGACACCTTTTTCTTTTCA
* * *
1415764 AAACCCACACGAGTTGGTGGCACCCTTTAGTCC-CTAAAGAGCAGGA-TGCCTTTTTCCTTTCAA
386 AAGCCCACACGTGTTGGTGG--CCCTTTAGTCCTC-AAAGAGCAGGACT-CCTTTTTCTTTTCAA
** * *
1415827 AGCCCACACGGGTAGGTGGCTCC
447 AGCCCACACAAGTTGGTGGCACC
* * * * * ** * *
1415850 CTTTAGCCCTTAAAAAGCCA-GACACCTTTTTCCTTTCAAAGGCCACACGAGTCGGTGGCTCTCT
1 CTTTAGTCCTCAAAGAG-CAGGACCCCTTTTTCCTTTCAAAGCCCACACGAGTTTGTGGCACCCT
* * * * * * *
1415914 TTTGTCCTCAAAGAGTAGGATGCTTTTTTCCTTTCAAAGCCCACACGAGTTGGAGGCACCCTTTA
65 TTAGTTCTGAAAGAGCAGGATGCCTTTTTCCTTTCAAAGCCCACACGAGTTTGTGGCACCCTTTA
* *** * * *
1415979 GTCCTCAAAGAGTGGGATGCCTTTTTCATTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGTC
130 GTCTTCAAAGAGCAAGATGCCCTTTTCCTTTCAATGCCCACACGAGTTGGTGGCACCC-----T-
* ** * * ** *
1416044 CTCAAAGAGGAGGATGTCTTTTTCCATCAAAAGGGCAAACGAGTTGGTGGCATTCTTTAGCCCTC
189 -TC----------A-GTC-TCTT---TC-AAAGCCCACACAAGTTGGT-GCACCCTTTAGTCCTC
* * * ** ** * *
1416109 AATGAGCAAGATG-CTTCTTT-CTTTCAAAGCCCAAACGAGTTGGTGGCATTCTTTTGTCCTCAA
236 AAAGAGCAGGATGCCTT-TTTCCTTTCAAAGCCCACACGAGTTCATGGCACCCTTTAGTCCTTAA
* * ** * * * * * ** *
1416172 AGAGCAAGACACCTTTTTCCTTTCAAATCCCACACGAGTTGGGGGACCCTTTACTCCTTAAAGAG
300 AAAGCAGGATGCCTTTTTCATTTCAAAACCCACACGAGTTGGTGGTCCATTTTGTCCTCAAAGAG
* * * ** *
1416237 CCA-GA-AGCCTTTTTCTTTTCAAAGCCCGCATGGGTTGGTCACACCATTTTGTCCTCAAAGAG-
365 -CAGGACA-CCTTTTTCTTTTCAAAGCCCACACGTGTTGGTGGC-CC-TTTAGTCCTCAAAGAGC
1416299 AGTGA-TACCTTTTTCTTTTCAAAGCCCACACAAGTTGGTGGCACC
426 AG-GACT-CCTTTTTCTTTTCAAAGCCCACACAAGTTGGTGGCACC
* * ** * * * *
1416344 CTTTACTCCTTAAAGAGCAGGATGCTTTTTTCTTTTCAAAGCCCACACGGGTTGGTGGCACCCTT
1 CTTTAGTCCTCAAAGAGCAGGACCCCTTTTTCCTTTCAAAGCCCACACGAGTTTGTGGCACCCTT
* * * * * * *
1416409 TAGTCCTCAAAGAGCAAGACATG--TTTTTCCTTTTAAAGCCCACACAAGTTGGTGGCACCTTTT
66 TAGTTCTGAAAGAGC-AG-GATGCCTTTTTCCTTTCAAAGCCCACACGAGTTTGTGGCACCCTTT
* * * *
1416472 GGT-TCTCAAAGAGCAAGATGCCTTTTTCCTTTCAAAGCCCGCACGAGTTGGTGGCACCCTTTAG
129 AGTCT-TCAAAGAGCAAGATGCCCTTTTCCTTTCAATGCCCACACGAGTTGGTGGCACCC-----
* * * *
1416536 TCCTCAAAAAGCAGAAAGCCTTTTTCCTTTCAAAGCCCACATC-A-TTAGCGACAACCTTTAGTC
188 T--T-------C----AG----TCT-CTTTCAAAGCCCACA-CAAGTTGGTG-CACCCTTTAGTC
* * * * * ** ** ** *
1416599 CTCAAAAAGTAAGACGCCTTTTCCCTTTCAAAGCCTGCAC-AGTTGGTGGCACATTTTAGTCCTC
233 CTCAAAGAGCAGGATGCCTTTTTCCTTTCAAAGCCCACACGAGTTCATGGCACCCTTTAGTCCTT
* * * * * * * * * * **
1416663 AAAGAGCCGGATTGCCTTTTTCTTTTCAGAGCCCAGAGGGGTTGGTGGCACCCTTTACTCCTCAA
298 AAAAAGCAGGA-TGCCTTTTTCATTTCAAAACCCACACGAGTTGGTGG-TCCATTTTGTCCTCAA
* ** * * * * * * *
1416728 AGAGGAGGATGCCTTTTTC--CTCAAAGGCCATACGAGTTTGTGGCACCCTTTAGTCCTTAAAAA
361 AGAGCAGGACACCTTTTTCTTTTCAAAGCCCACACGTGTTGGTGG--CCCTTTAGTCCTCAAAGA
* * * * ** *
1416791 GCAGGA-TACCATTTTCGTTTCAAAACCTACACGGGTTGGTGG-TCC
424 GCAGGACT-CCTTTTTCTTTTCAAAGCCCACACAAGTTGGTGGCACC
* * * * * *
1416836 ATTTTGTCCTCAAAGAGTAGGACACCTTTTTCTTTTCAAA-CCACACACGTG-TTGTTGGCACCC
1 CTTTAGTCCTCAAAGAGCAGGACCCCTTTTTCCTTTCAAAGCC-CACACGAGTTTG-TGGCACCC
* * * * ** *
1416899 TTTAGTCCTCAAAGAGCAAGACGTATTTTTCCTTTCAAAGCCCACA-GAAGTTGGTGGCACCCTT
64 TTTAGTTCTGAAAGAGCAGGATGCCTTTTTCCTTTCAAAGCCCACACG-AGTTTGTGGCACCCTT
* * * * * * * *
1416963 TAGTCCTCAAAGAGCAGGATGGCTTTTTCCTTTCAAAGCCCGCACTAGTTGGTGGTACCTTCAGT
128 TAGTCTTCAAAGAGCAAGATGCCCTTTTCCTTTCAATGCCCACACGAGTTGGTGGCACC--C--T
* * *
1417028 CCTCAAAAAGCAGGACGCATTTTTCCTTTCAAATCCCACACGAGTTGGTGGCACCCTTTAGTCCT
189 --T-------C---A-G----TCT-CTTTCAAAGCCCACACAAGTTGGT-GCACCCTTTAGTCCT
* *
1417093 CAAAGAGTAGGATGCC---TT--TTT------------GAG----TGGCACCCTTTAGTCCTCAA
235 CAAAGAGCAGGATGCCTTTTTCCTTTCAAAGCCCACACGAGTTCATGGCACCCTTTAGTCCTTAA
* * * * * * * *
1417137 AAAGCAAGATGCCTTTTTCCTTTCAAAGCCCACAC-AATTGTTGGCACCCTTTAGTCCTCAAAGA
300 AAAGCAGGATGCCTTTTTCATTTCAAAACCCACACGAGTTGGTGG-TCCATTTTGTCCTCAAAGA
* * * * * *
1417201 GCAAGACACCTTTTTCCTTTCAAAGCCTACACGAGTTGCTGGCACCCTTTAGTCCTCAAATAGCA
364 GCAGGACACCTTTTTCTTTTCAAAGCCCACACGTGTTGGTGG--CCCTTTAGTCCTCAAAGAGCA
*
1417266 GGA-TGGCTTTTTCTTTTCAAAGCCCACACAAGTTGGTGGCACC
427 GGACT-CCTTTTTCTTTTCAAAGCCCACACAAGTTGGTGGCACC
* ** * * * *
1417309 CTTTAGTCTTCAAAGAGCTA-GATGCCTTTTTCTTTTCAAAGCACACACGAGTTTGTGGGACCTT
1 CTTTAGTCCTCAAAGAGC-AGGACCCCTTTTTCCTTTCAAAGCCCACACGAGTTTGTGGCACCCT
* * * * * *
1417373 TTAGTCCTCAAAGAGCAAGATGCCTTTTTCCTTTCAACGCCCACACGAGTTGGTGGCACCCTTCA
65 TTAGTTCTGAAAGAGCAGGATGCCTTTTTCCTTTCAAAGCCCACACGAGTTTGTGGCACCCTTTA
* ******* * * *** *
1417438 GTCTCCTTTCAAAGCCCA-CACAAATTGGTGGCACCCTTT-AGT-CCTCA-AAGAG--CAAGACA
130 G--T-C-TTCAAAG---AGCA-AGA-TGCCCTTTTCCTTTCAATGCC-CACACGAGTTGGTGGCA
* * ** * * *
1417497 -CCTT---TTTCATTTCAAAGCCTACAGGAGTTGTTGGCACCCTTTAGTCCTCGAAGAGTAGGAC
185 CCCTTCAGTCTC-TTTCAAAGCCCACACAAGTTGGT-GCACCCTTTAGTCCTCAAAGAGCAGGA-
* ** * * *
1417558 AG-CTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGTGCTCAAAGAGCAGGATGC
247 TGCCTTTTTCCTTTCAAAGCCCACACGAGTTCATGGCACCCTTTAGTCCTTAAAAAGCAGGATGC
** * ** * * * *
1417622 CTTTTTCATTTCAACTCCCGCATAAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGACGCCTT
312 CTTTTTCATTTCAAAACCCACACGAGTTGGTGG-TCCATTTTGTCCTCAAAGAGCAGGACACCTT
* * * *
1417687 TTTCCTTTCAAAGCCCACACGAGTTTGTGGCACCCTTTAGTCCTCAAAGAGCAAGA-TGCCTTTT
376 TTTCTTTTCAAAGCCCACACGTGTTGGTGG--CCCTTTAGTCCTCAAAGAGCAGGACT-CCTTTT
* * * *
1417751 TCCTTTCAACGCCCACACGACTTGGTGGCA-C
438 TCTTTTCAAAGCCCACACAAGTTGGTGGCACC
* * * *
1417782 C--T--T--T-------CA-G-------TCTCCTTTCAAAGCCCACACAAGTTGGTGGCAACCTT
1 CTTTAGTCCTCAAAGAGCAGGACCCCTTTTTCCTTTCAAAGCCCACACGAGTTTGTGGCACCCTT
* * * * * *
1417826 TAGTCCTCAAAGAGCAGGATGCCTTTTTCCTTTCAAA-ACCACACGAGTTGGTGACACCTTTTAG
66 TAGTTCTGAAAGAGCAGGATGCCTTTTTCCTTTCAAAGCCCACACGAGTTTGTGGCACCCTTTAG
* * * * * * * * * *
1417890 TCCTCAAAAAGCAGGGTGCCTTTTTCGTTTCAA-ACCTACACGGGTTGGTGGCACCCTTTAGTC-
131 TCTTCAAAGAGCAAGATGCCCTTTTCCTTTCAATGCCCACACGAGTTGGTGGCACCCTTCAGTCT
*** * *** * * *
1417953 C--TCAAAGAGTAGGATGCCTTTTTGAGTGGTACCCTTTAGTCCTCAAAGAGCAAGACGCCTTTT
196 CTTTCAAAGCCCA-CA---CAAGTTG-GT-GCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTT
* ** *
1418016 TCCTTTCAACGCCCACACGAGTTGGTGGCACCCTTCAGTCTCCTTTCAAAGCCCACA-CAAGTTG
255 TCCTTTCAAAGCCCACACGAGTTCATGGCACCCTTTAG--TCC-TT-AAA----A-AGC-AG--G
* ** * * * * ** * *
1418080 GTGGCACCCTTT-AGTCCTCAAAGA---GCAGGATGTT-TTTTTCC-TTTCAAAG-CC-CACATG
308 AT-GC-CTTTTTCA-T-TTCAAA-ACCCACACGA-GTTGGTGGTCCATTT---TGTCCTCA-AAG
** ** ** * * **
1418137 AGTTGGTGACACCTTTTAGTCCTCAAA---CAGCAGGGTGCCTTTTTCGTTTCAAACCTACACGG
363 AG-CAG-GACACCTTTTTCTTTTCAAAGCCCA-CA-CGTG-----TTGGTGGC---CCT------
* * *
1418199 GTTGGTGGCCTCATTTTGTCCTCAAAGAGTAGGACTCCTTTTTCTTTAGTCCTCAAAGAGCACGA
410 -TTAGT---C-C----T-----CAAAGAGCAGGACTCCTTTTTC-TT--T--TC-AA-AGC-CCA
* *** ** **
1418264 CCCCTTTTTTTTTCAAAGCC
453 CACAAGTTGGTGGC--A-CC
* * ** ** ** *
1418284 TACATGGGTTTGTGGCACCTTTTAGTTCTGAAAGAGCATGACCTATTTTTCCTTTCAAAGCACAC
1 --C-T---TTAGT----CC--TCA---AAG-AGCAG---GACCCCTTTTTCCTTTCAAAGCCCAC
* * * * * *
1418349 ACGAGTTTGTGGCACCCTTTAGTCCTCAAAGAGCAAGATTCCTTTTTCTTTTCAACGCCCACACG
47 ACGAGTTTGTGGCACCCTTTAGTTCTGAAAGAGCAGGATGCCTTTTTCCTTTCAAAGCCCACACG
* * * * * ** * * *
1418414 AGTTGGTGGCACCCTTTAGCCCTCAAAGAACAAGACG-TATTTCTCTTTTTAAAGCCCACA-GAA
112 AGTTTGTGGCACCCTTTAGTCTTCAAAGAGCAAGATGCCCTTT-TCCTTTCAATGCCCACACG-A
* * * *
1418477 GTTGATGGCACCCTTTAGTCCCCAAAGAGCAGGATGCCTTTTTCCTTTCAAAGTCCGCACGAGTT
175 GTTGGTGGCACCC--T--T----------CA-G-T--C----T-CTTTCAAAGCCCACACAAGTT
* * * * * * *
1418542 GGTGGCACCCTTCAGTCCTCAAAAATCAAGATGCCTTTTTGCTTTCAAAGCCAACACTAGTT-AG
217 GGT-GCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTTTCCTTTCAAAGCCCACACGAGTTCA-
* *
1418606 TGGCACCCTTTAGT-CTTCAAAGAGTAGGATGCC---TT--TTT------------GAG-TGGT-
280 TGGCACCCTTTAGTCCTT-AAAAAGCAGGATGCCTTTTTCATTTCAAAACCCACACGAGTTGGTG
* * * * * * * *
1418651 -ACCCTTTAGTCCTCAAAGAGCAAGACGCCTTTTTCCTTTCAATGCCCACACGAGTTGGTGG--C
344 GTCCATTTTGTCCTCAAAGAGCAGGACACCTTTTTCTTTTCAAAGCCCACACGTGTTGGTGGCCC
** *
1418713 ---A--CC-C----TTCA-G--T-C----TCCTTTCAAAGCCCACACAAGTTGGTGGCACC
409 TTTAGTCCTCAAAGAGCAGGACTCCTTTTTCTTTTCAAAGCCCACACAAGTTGGTGGCACC
** * * * * *
1418756 CTTTAGTCCTCAAAGAGCAGGATGCTTTTTTCCTTTCAAAGCCCACATGAGTTGGTGACACCTTT
1 CTTTAGTCCTCAAAGAGCAGGACCCCTTTTTCCTTTCAAAGCCCACACGAGTTTGTGGCACCCTT
* * * * * * * * * *
1418821 TAGTCCTCAAAAAGCAGGGTGCCTTTTTCGTTTCAAA-CCTACACGGGTTGGTGGC-CTCATTTT
66 TAGTTCTGAAAGAGCAGGATGCCTTTTTCCTTTCAAAGCCCACACGAGTTTGTGGCAC-CCTTTA
* * * * * * *** * *
1418884 GTCCTCAAAGAGTAGGA--CTCCTTTTTCTTT-AGT-CCTCA-AAGAG--CACGAC-CCCTT--T
130 GTCTTCAAAGAGCAAGATGC-CCTTTTCCTTTCAATGCC-CACACGAGTTGGTGGCACCCTTCAG
* * * ** * * *
1418939 TTTATTTCAAAGCCTACACGGGGTT-GTGGCACCCTTTAGTTCTGAAAGAGCATGA--CCTATTT
193 TCTCTTTCAAAGCCCACAC-AAGTTGGT-GCACCCTTTAGTCCTCAAAGAGCAGGATGCC--TTT
** ** * * * *
1419001 TTCCTTTCAAAGCCCACACGAGTTTGTGTTACCCTTTAGTCCTCAAAGAGCAAGATTCCTTTTTC
254 TTCCTTTCAAAGCCCACACGAGTTCATGGCACCCTTTAGTCCTTAAAAAGCAGGATGCCTTTTTC
* ** * * *
1419066 CTTTCAACGCCCACACGTGTTGCTGGCACCCTTCAGTCTCCTTTCAAAGCCCACACAAGTTGGTG
319 ATTTCAAAACCCACACGAG-T--TGG------T--G-GTCCATT---------------TT-GT-
* * ** * * * *
1419131 GCACCCTTTAGTCCTTAAAAACCAGGATGCCTTTTTCTTTTAAAAACCCACATGGGTTGGTGGTC
355 ----CC--T----C--AAAGAGCAGGACACCTTTTTCTTTTCAAAGCCCACACGTGTTGGTGG-C
* * * * ** * *
1419196 CATTTTGTCCTCAAAGAGCAAGACACCTTTTTCTTTTCAAAGCCCACACGTGTTGCTGGTACC
407 CCTTTAGTCCTCAAAGAGCAGGACTCCTTTTTCTTTTCAAAGCCCACACAAGTTGGTGGCACC
* * *** * *
1419259 CTTTAGTCCTCAAAAAGCAAGACGTATTTTTCCTTTCAAAGCCCATA-GAAGTTGGTGGCACCCT
1 CTTTAGTCCTCAAAGAGCAGGACCCCTTTTTCCTTTCAAAGCCCACACG-AGTTTGTGGCACCCT
* * * * * *
1419323 TTTGTCCTCAAAAAGTAGGATGCCTTTTTCCTTTCAAAGCCCGA-ACGAGTTGGTGGCACCCTTT
65 TTAGTTCTGAAAGAGCAGGATGCCTTTTTCCTTTCAAAGCCC-ACACGAGTTTGTGGCACCCTTT
* * * * * * *
1419387 AGTCCTCAAAAAGCAGGATGCCTTTTTTCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGT
129 AGTCTTCAAAGAGCAAGATGCCCTTTTCCTTTCAATGCCCACACGAGTTGGTGGCACCCTTCAGT
** * *** * * * **
1419452 C-C--TCAAAGAGCAGGATGCCTTTTTGAGTGGCACCCGTTACTCCTCAAAGAGCAAGACACCTT
194 CTCTTTCAAAGCCCA-CA---CAAGTTG-GT-GCACCCTTTAGTCCTCAAAGAGCAGGATGCCTT
** * * * ** *
1419514 TTTCCTTTCAAAGCCCACAC-AGTTGGTGGAACCCTTTAGTCCTCT-AAGAGCAAGACACCTTTC
253 TTTCCTTTCAAAGCCCACACGAGTTCATGGCACCCTTTAGTCCT-TAAAAAGCAGGATGCCTTTT
* * * * * * * ** * * * * *
1419577 TCCTTTCGAAGCCTACCCCAGTTGCTAGCACCCTTTAGTCCTCGAAGAGTAGGACACCTTTTTCC
317 TCATTTCAAAACCCACACGAGTTGGT-GGTCCATTTTGTCCTCAAAGAGCAGGACACCTTTTTCT
* * *
1419642 TTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCGGGA-TGCCTTTTTCCTT
381 TTTCAAAGCCCACACGTGTTGGTGG--CCCTTTAGTCCTCAAAGAGCAGGACT-CCTTTTTCTTT
* *
1419706 TCAAAGCCCACACGAGTTTGTGGCACC
443 TCAAAGCCCACACAAGTTGGTGGCACC
* ** * *
1419733 CTTTAGTCCTCAAAGAGCAAGATGCCTTTTTCCTTTCAACGCCCACACGAG-TTGATGGAACCCT
1 CTTTAGTCCTCAAAGAGCAGGACCCCTTTTTCCTTTCAAAGCCCACACGAGTTTG-TGGCACCCT
*
1419797 TTAGTCTCCTTTTAAAACCCACACAAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCT
65 TTAGT-T-C---T----------GAA---------A----------------GAGCAGGATGCCT
* * * * * * * *
1419862 TTTTCCTTTCTAAGCCCACACGAGTTCGTGGCACCATTTAGTCCTT-AAAAAGTAGGATTCCTTT
90 TTTTCCTTTCAAAGCCCACACGAGTTTGTGGCACCCTTTAGT-CTTCAAAGAGCAAGATGCCCTT
* ** * *
1419926 TTCATTTCAAAACCCACACGAGTTGGTGGTCCATTTTGTCCTCCAATAGCAGGACACCTTTTTCT
154 TTCCTTTCAATGCCCACACGAGTTGGTGG--CA-------C-CC--T-TCA-G-------TCTC-
** * * * * **
1419991 TTTCAAAGCCCACACGTGTTGTTGGTACCCTTTAGTCCTCAAAGAGCAAGACGTATTTTTCCTTT
197 TTTCAAAGCCCACACAAGTTGGT-GCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTTTCCTTT
* * ** * * *
1420056 CAATGCCCATA-GAAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGCATGCC---TT--TTT--
261 CAAAGCCCACACG-AGTTCATGGCACCCTTTAGTCCTTAAAAAGCAGGATGCCTTTTTCATTTCA
** * * * * *
1420113 --------A--AG-T-G-GCACCCTTTTGTCCTCAAAGAGCAAGACGCCTTTTTCCTTTCGAAGC
325 AAACCCACACGAGTTGGTGGTCCATTTTGTCCTCAAAGAGCAGGACACCTTTTTCTTTTCAAAGC
* * * * *
1420165 CCACAC-AGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAAGACACCTTTTTCATTTCAAAGCCTA
390 CCACACGTGTTGGTGG--CCCTTTAGTCCTCAAAGAGCAGGACTCCTTTTTCTTTTCAAAGCCCA
* *
1420229 CACGAGTTGCTGGCACC
453 CACAAGTTGGTGGCACC
* * * * * * *
1420246 GTTTAGTCGTCGAAGAGTACGACACCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTT
1 CTTTAGTCCTCAAAGAGCAGGACCCCTTTTTCCTTTCAAAGCCCACACGAGTTTGTGGCACCCTT
* * * * * *
1420311 TAGTCCTCAAAGAGCAGGACGCCTTTTTTCTTTTCAAAGCCCACACAAGTTGGTGGCACCCTTTA
66 TAGTTCTGAAAGAGCAGGATGCC-TTTTTCCTTTCAAAGCCCACACGAGTTTGTGGCACCCTTTA
* ** * * * * *
1420376 GTCCTCAAAGAGCGGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTTGTGGCACCCTTTA-T-
130 GTCTTCAAAGAGCAAGATGCCCTTTTCCTTTCAATGCCCACACGAGTTGGTGGCACCCTTCAGTC
* * * * **** * * *
1420439 TC-CTCAAAG---A-GCAAGATGCCTTTTTCCTTTCAACG-CC-CACACGAGTTGATGGCA-CCC
195 TCTTTCAAAGCCCACACAAGTTG-GTGCACCCTTT--A-GTCCTCA-AAGAG--CA-GG-ATGCC
* * ** * *
1420496 TTTAGTCTCCTTTCAAAACCCACACAAGTTGGTGGCACCCTTTAGTCCTCAAAAAGCAGCATGCC
251 TTT--T-TCCTTTCAAAGCCCACACGAGTTCATGGCACCCTTTAGTCCTTAAAAAGCAGGATGCC
* * * * * * * **
1420561 TTTTTCCTTTCTAAGCCCACACGAGTTCGTGG-CAACATTTAGTCCTTAAAAAGCAGGATTCCTT
313 TTTTTCATTTCAAAACCCACACGAGTTGGTGGTC--CATTTTGTCCTCAAAGAGCAGGACACCTT
* * * * * * *
1420625 TTTCATTTCAAAACCCACACGAGTTGGTGGTCCGTTTTGTCCTCAAAGTGCAGGACACCTTTTTC
376 TTTCTTTTCAAAGCCCACACGTGTTGGTGG-CCCTTTAGTCCTCAAAGAGCAGGACTCCTTTTTC
** *
1420690 TTTTCAAAGCCCACACGTGTTGTTGGCACC
440 TTTTCAAAGCCCACACAAGTTGGTGGCACC
* * *** * *
1420720 CTTTAGTCCTCAGAGAGCAAGACGTATTTTTCCTTTCAAAGCCCATA-GAAGTTGGTGGCACCCT
1 CTTTAGTCCTCAAAGAGCAGGACCCCTTTTTCCTTTCAAAGCCCACACG-AGTTTGTGGCACCCT
* * * *
1420784 TTAGTTCTCAAAGAGAAGGATGCCTTTTTCCTTTCAAAGCCCGCACGAGTTGGTGGCACCCTTTA
65 TTAGTTCTGAAAGAGCAGGATGCCTTTTTCCTTTCAAAGCCCACACGAGTTTGTGGCACCCTTTA
* * * * * * * *
1420849 GTCCTCAAAAAGCAGGATGCCTTTTTCCTTTCAAAGCCCACACGAATCGGTGGCACCCTTTAGTC
130 GTCTTCAAAGAGCAAGATGCCCTTTTCCTTTCAATGCCCACACGAGTTGGTGGCACCCTTCAGTC
** *** * * *
1420914 -C--TCAAAGAGCAGCATGCCTTTTTAAGTGGCACCCTTTAGTCCTCAAAGAGCAAGACGCCTTT
195 TCTTTCAAAGCCCA-CA---CAAGTT-GGT-GCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTT
* * ** * * * **
1420976 TTCCTTTCGAACCCCACAC-AGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAAGACACCTTTTTC
254 TTCCTTTCAAAGCCCACACGAGTTCATGGCACCCTTTAGTCCTTAAAAAGCAGGATGCCTTTTTC
* * * * * * * * * * *
1421040 ATTTCAAAGCCTACACGAGTTGCTGGCACCCTTTAGTCGTCGAAGAGTAGGACACCTTTCTCCTT
319 ATTTCAAAACCCACACGAGTTGGTGG-TCCATTTTGTCCTCAAAGAGCAGGACACCTTTTTCTTT
* * *
1421105 TCAAAGCCCACACGAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGCCGCCTTTTTCTTTTCA
383 TCAAAGCCCACACGTGTTGGTGG--CCCTTTAGTCCTCAAAGAGCAGGACTCCTTTTTCTTTTCA
1421170 AAGCCCACACAAGTTGGTGGCACC
446 AAGCCCACACAAGTTGGTGGCACC
* * ** *
1421194 CTTTAGTCCTCAAAAATCAGGATGCCTTTTTCCTTTCAAAGCCCACACAAGTTTGTGGCACCCTT
1 CTTTAGTCCTCAAAGAGCAGGACCCCTTTTTCCTTTCAAAGCCCACACGAGTTTGTGGCACCCTT
* * * * ** * * *
1421259 TAGTCCTTAAAGAGCAAGATGTCTTTTTCCTTTCAGCGCCCACACGTGTTGGTGGCACCCTTCAG
66 TAGTTCTGAAAGAGCAGGATGCCTTTTTCCTTTCAAAGCCCACACGAGTTTGTGGCACCCTTTAG
* * * *** * * *
1421324 TCTCCTTTCAAAGCCCACACAAGTTG--GTGGCACCCTTCAGT-CCTCA-AAGA-TCTGGAT-G-
131 --T-C-TTCAAAG---A-GCAAGATGCCCT-TTTCCTTTCAATGCC-CACACGAGT-TGG-TGGC
* * * * * * *
1421382 -CCTTTC--TC-CTTTCAAAGCCAACACGAGTTGGTGACATCTTTTAGTCCTCAAAAAGCAGGTT
184 ACCCTTCAGTCTCTTTCAAAGCCCACACAAGTTGGTG-CACCCTTTAGTCCTCAAAGAGCAGGAT
* * * ** * ** * * * * *
1421443 GCCTTTTTCGTTTCAAA-CCTACACGGGTTGGTGGC-CTCATTTTTTCCTCAAAGAGTAGTATTC
248 GCCTTTTTCCTTTCAAAGCCCACACGAGTTCATGGCAC-CCTTTAGTCCTTAAAAAGCAGGATGC
* * * * * * * * * **
1421506 CTTTTTCTTTTCAAAGCCTACACGAGTTTGTGGCACCCTTTAGTTCTGAAAGAGCAGGATGCCTT
312 CTTTTTCATTTCAAAACCCACACGAGTTGGTGG-TCCATTTTGTCCTCAAAGAGCAGGACACCTT
* * * * *
1421571 TTTCTTTTCAAAGCCCACACGAGTTTGTGACACCCTTTAGTCCTCAAAGAGCAAGA-TGCCCTTT
376 TTTCTTTTCAAAGCCCACACGTGTTGGTG--GCCCTTTAGTCCTCAAAGAGCAGGACT-CCTTTT
* * *
1421635 TCCTTTCAATGCCCACACGAGTTGGTGGCA-C
438 TCTTTTCAAAGCCCACACAAGTTGGTGGCACC
* * *
1421666 C---A-T--T-------CA-G-------TCTCCTTTCAAAGCCCACACAAGTTGGTGGCACCCTT
1 CTTTAGTCCTCAAAGAGCAGGACCCCTTTTTCCTTTCAAAGCCCACACGAGTTTGTGGCACCCTT
* * * * * **
1421710 TAGTCCTCAAAAAGCAGGATGCCTTTTTCATTTCAAAGCTCACACGAGTTCATGGCACCCTTTAG
66 TAGTTCTGAAAGAGCAGGATGCCTTTTTCCTTTCAAAGCCCACACGAGTTTGTGGCACCCTTTAG
* * * * ** *
1421775 TCCTT-AAA-ATGCAGGATGCCTTTTTCGTTTAAAAACCCACATTG-GTTGGTGGTCCATTTTGT
131 T-CTTCAAAGA-GCAAGATGCCCTTTTCCTTTCAATGCCCACA-CGAGTTGGTGG--CA------
** * * * *
1421837 CCTCAAAGAGCAGGACACCTTTTTCTTTTCAAAGCCCGCACATGTTGTTGGCACCCTTTAGTCCT
185 CC-C----TTCA-G-------TCTC-TTTCAAAGCCCACACAAGTTGGT-GCACCCTTTAGTCCT
* * ** * * * *
1421902 CAAAGAGCAAGACGTATTTTTCTTTTCAAAGCCCACA-GAAGTTGATGGGACCCTTTAGTCCTCA
235 CAAAGAGCAGGATGCCTTTTTCCTTTCAAAGCCCACACG-AGTTCATGGCACCCTTTAGTCCTTA
* * * * * * * ** *
1421966 AATAGCAGGATGCCTTTTTCCTTTCGAAGCCCGCACGAGTTGGTGGCACCCTTCAGTCCTCAAAA
299 AAAAGCAGGATGCCTTTTTCATTTCAAAACCCACACGAGTTGGTGG-TCCATTTTGTCCTCAAAG
** * * *
1422031 AGCAGGATGCCTTTTTCCTTTCAAAGCCCACACGAGTTAGTGGCACCCTTTAGTCCTCAAAGAGC
363 AGCAGGACACCTTTTTCTTTTCAAAGCCCACACGTGTTGGTGG--CCCTTTAGTCCTCAAAGAGC
*
1422096 AGCA-TGCC----T-TTTT------------AA----GTGGCACC
426 AGGACT-CCTTTTTCTTTTCAAAGCCCACACAAGTTGGTGGCACC
* * * * *
1422119 CTTCAGTCCTCAAAGAGCAAGACGCCTTTTTCCTTTCGAAGCCCACAC-AGTTGGTGGCACCCTT
1 CTTTAGTCCTCAAAGAGCAGGACCCCTTTTTCCTTTCAAAGCCCACACGAGTTTGTGGCACCCTT
* * * ** * *
1422183 TAGTCCTCAAAGAGCAAGACACCTTTTTCATTTCAAAGCCTACACGAG-TTGCTGGCACCCTTTA
66 TAGTTCTGAAAGAGCAGGATGCCTTTTTCCTTTCAAAGCCCACACGAGTTTG-TGGCACCCTTTA
* * * * ** * *
1422247 GTCGTCGAAGAGTAGGACACCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGTC
130 GTCTTCAAAGAGCAAGATGCCCTTTTCCTTTCAATGCCCACACGAGTTGGTGGCACCC-----T-
*
1422312 CTCAAAGAGCAAGCCGCCTTTTTCTTTTCAAAGCCCACACAAGTTGGTGGCACCCTTTAGTCCTC
189 -T-------C-A---G----TCTC-TTTCAAAGCCCACACAAGTTGGT-GCACCCTTTAGTCCTC
* * * **
1422377 AAAAATCAGGATGCCTTTTTCCTTTCAAAGCCCACACAAGTTTGTGGCACCCTTTAGTCCTTAAA
236 AAAGAGCAGGATGCCTTTTTCCTTTCAAAGCCCACACGAGTTCATGGCACCCTTTAGTCCTTAAA
* * * * *** * **
1422442 GAGCAAGATGTCTTTTTCCTTTCAGCGCCCACACGTGTTGGTGG--CA------CC-C----TTC
301 AAGCAGGATGCCTTTTTCATTTCAAAACCCACACGAGTTGGTGGTCCATTTTGTCCTCAAAGAGC
* * ** *
1422494 A-G-------TCTCCTTTCAAAGCCCACACAAGTTGGTGGCATCCTTTAGTCCTCAATA-ATCAG
366 AGGACACCTTTTTCTTTTCAAAGCCCACACGTGTTGGTGGC--CCTTTAGTCCTCAA-AGAGCAG
* *
1422550 GA-TGCCTTTTTCCTTTCAAAGCCCACACAAGTTTGTGGCACC
428 GACT-CCTTTTTCTTTTCAAAGCCCACACAAGTTGGTGGCACC
* * * *** ** * *
1422592 CTTTAGTCCTTAAAGTGCAAGATGTCTTTTTCCTTTCAGCGCCCACACGTGTTGGTGGCACCCTT
1 CTTTAGTCCTCAAAGAGCAGGACCCCTTTTTCCTTTCAAAGCCCACACGAGTTTGTGG-------
1422657 CAGTCTCCTTTCAAAGCCCACACAAGTTGGTGGCACCCTTTAGTCCTTAAAGAGCAGGATGCCTT
59 CA--C-CCTTT-------------AG-T--T------C--T-G-----AAAGAGCAGGATGCCTT
* * * * * * * * * * *
1422722 TCTCCTTTCAAAGCCAACACGAGTTGGTGACATCTTTTAGTCCTCAAAAAGCAGGTTGCCTTTTT
91 TTTCCTTTCAAAGCCCACACGAGTTTGTGGCACCCTTTAGTCTTCAAAGAGCAAGATGCCCTTTT
* * * * * * *
1422787 CGTTTCAA-ACCTACACGGGTTGGTGG---CC-TCA-T-TTTTTC----CTCA-A-AGAG-TAG-
156 CCTTTCAATGCCCACACGAGTTGGTGGCACCCTTCAGTCTCTTTCAAAGCCCACACA-AGTTGGT
**** * **
1422837 G-ACTCCTTT--T--TC--TTTTCA--AAG-------CC--T--------ACACGAGTTTGTGGC
220 GCAC-CCTTTAGTCCTCAAAGAGCAGGATGCCTTTTTCCTTTCAAAGCCCACACGAGTTCATGGC
* * ** * * * * *
1422876 ACCCTTTAGTTCTGAAGGAGTAGGATGCCTTTTTCTTTTCAAAGCCCACACGAGTT--TGTTACA
284 ACCCTTTAGTCCTTAAAAAGCAGGATGCCTTTTTCATTTCAAAACCCACACGAGTTGGTGGTCCA
* ** * * * *
1422939 CTCTTTAGTCCTCAAAGAGCAAGATGCCCTTTTCCTTTCAATGCCCACA-GAGTTGGTGGCACC-
349 -T-TTT-GTCCTCAAAGAGCAGGACACCTTTTTCTTTTCAAAGCCCACACGTGTTGGTGGC-CCT
*
1423002 --A-T--T-------CA-G--T-C----TCCTTTCAAAGCCCACACAAGTTGGTGGCACC
410 TTAGTCCTCAAAGAGCAGGACTCCTTTTTCTTTTCAAAGCCCACACAAGTTGGTGGCACC
* ** * * * **
1423042 CTTTAGTCCTCAAAAAGCAGGATGCCTTTTTCATTTAAAAGCTCACACGAGTTCATGGCACCCTT
1 CTTTAGTCCTCAAAGAGCAGGACCCCTTTTTCCTTTCAAAGCCCACACGAGTTTGTGGCACCCTT
* * * * * * * *
1423107 TA-TTCCTTAAA-ATGCAGGATGCCTTTTTCGTTTAAAAACCCACATTG-GTTGGTGG-TCCATT
66 TAGTT-CTGAAAGA-GCAGGATGCCTTTTTCCTTTCAAAGCCCACA-CGAGTTTGTGGCACCCTT
* * * * ** * * * * *
1423168 TTGTCCTGAAAGAGCAGGACACCTTTTTCTTTTCAAAGCCCGCAC-ATGTTGTTGGCACCCTTTA
128 TAGTCTTCAAAGAGCAAGATGCCCTTTTCCTTTCAATGCCCACACGA-GTTGGTGGCACCC----
* * * *
1423232 GTCCTCAAAGAGCAAGACGTATTTTTCTTTTCAAAGCCCACAGAAGTTGATGGGACCCTTTAGTC
188 -T--T-------C---A-G----TCTC-TTTCAAAGCCCACACAAGTTGGT-GCACCCTTTAGTC
* * * ** * *
1423297 CTCAAATAGCAGGATGCCTTTTTCCTTTCGAAGCCCGCACGAGTTGGTGGCACCCTTCAGTCCTC
233 CTCAAAGAGCAGGATGCCTTTTTCCTTTCAAAGCCCACACGAGTTCATGGCACCCTTTAGTCCTT
* * * * * **
1423362 AAAAAGCAGGATGCCTTTTTCCTTTCAAAGCCCACACGAGTTAGTGGCACCCTTCAGTCCTCAAA
298 AAAAAGCAGGATGCCTTTTTCATTTCAAAACCCACACGAGTTGGTGG-TCCATTTTGTCCTCAAA
* ** ** **
1423427 AAGCAGGATGCC----T-TTTT----G-----A---G-TGG-CACCCTTTAGTCCGGAAAGAGCA
362 GAGCAGGACACCTTTTTCTTTTCAAAGCCCACACGTGTTGGTGGCCCTTTAGTCCTCAAAGAGCA
* *
1423473 AGA-TGCCTTTTTCCTTTCAAAGCCCACAC-AGTTGGTGGCACC
427 GGACT-CCTTTTTCTTTTCAAAGCCCACACAAGTTGGTGGCACC
* * *** * *
1423515 CTTTAATCCTCAAAGAGCAAGACGTATTTTTCCTTTCAAAGCCCATA-GAAGTTGGTGGCACCCT
1 CTTTAGTCCTCAAAGAGCAGGACCCCTTTTTCCTTTCAAAGCCCACACG-AGTTTGTGGCACCCT
* * * * *
1423579 TTAGTTCTCAAAGAGAAGGATGCCTTTTTCCTTTCAAAGCCCGCACGAGTTGGTGGCACTCTTTA
65 TTAGTTCTGAAAGAGCAGGATGCCTTTTTCCTTTCAAAGCCCACACGAGTTTGTGGCACCCTTTA
* * * * * * *
1423644 GTCCTCAAAAAGCAGGATGCCTTTTTCCTTTCAAAGCCCACACGAATTGGTGGCACCCTTTAGTC
130 GTCTTCAAAGAGCAAGATGCCCTTTTCCTTTCAATGCCCACACGAGTTGGTGGCACCCTTCAGTC
** *** * **
1423709 -C--TCAAAGAGCAGCATGCCTTTTTAAGTGGCACCCTTTAGTCCTCAAAGAGCAGGCCGCCTTT
195 TCTTTCAAAGCCCA-CA---CAAGTT-GGT-GCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTT
* * * ** * * * *
1423771 TTCTTTTCAAATCCCACACAAGTTGGTGGCATCCTTTAGTCCTCAATAATCAGGATGCCTTTTTC
254 TTCCTTTCAAAGCCCACACGAGTTCATGGCACCCTTTAGTCCTTAAAAAGCAGGATGCCTTTTTC
* * * * * * * * * * *** *
1423836 CTTTCAAAGCCCACACAAGTTTGTGGCACCCTTTAGTCCTTAAAGTGCAAGATGTCTTTTTCCTT
319 ATTTCAAAACCCACACGAGTTGGTGG-TCCATTTTGTCCTCAAAGAGCAGGACACCTTTTTCTTT
** ** *
1423901 TCAGCGCCCACACGTGTTGGTGG--C---A--CC-C----TTCA-G--T-C----TCCTTTCAAA
383 TCAAAGCCCACACGTGTTGGTGGCCCTTTAGTCCTCAAAGAGCAGGACTCCTTTTTCTTTTCAAA
1423946 GCCCACACAAGTTGGTGGCACC
448 GCCCACACAAGTTGGTGGCACC
* ** * * * * * *
1423968 CTTTAGTCCTTAAAGAGCAGGATGCCTTTCTCCTTTCAAAGCCAACACGAGTTGGTGACATCTTT
1 CTTTAGTCCTCAAAGAGCAGGACCCCTTTTTCCTTTCAAAGCCCACACGAGTTTGTGGCACCCTT
* * * * * * * * * *
1424033 TAGTCCTCAAAAAGCAGGTTGCCTTTTTCGTTTCAAA-CCTACACGGGTTGGTGGC-CTCATTTT
66 TAGTTCTGAAAGAGCAGGATGCCTTTTTCCTTTCAAAGCCCACACGAGTTTGTGGCAC-CCTTTA
* * * * * * * * *
1424096 TTCCTCAAAGAGTAGGACT-CCTTTTTCTTTTCAAAGCCTACACGAGTTTGTGGCACCCTTTAAT
130 GTCTTCAAAGAGCAAGA-TGCCCTTTTCCTTTCAATGCCCACACGAGTTGGTGGCACCC------
* * *
1424160 TCTGAAAGAGCAGGACGCCTTTTTCTTTTCAAAGCCCACACGAGTTTGTGACACCCTTTAGTCCT
188 T-T-------C---A-G----TCTC-TTTCAAAGCCCACACAAGTTGGTG-CACCCTTTAGTCCT
* * * ** * *
1424225 CAAAGAGCAAGATGCCCTTTTCCTTTCAATGCCCACACGAGTTGGTGGCACCATTCAGTCTCCTT
235 CAAAGAGCAGGATGCCTTTTTCCTTTCAAAGCCCACACGAGTTCATGGCACCCTTTAG--TCC-T
* ** * * * * *
1424290 TCAAAGCCCACA-CAAGTTGGTGGCACCCTTT-AGTCCTCAAATA-GCAGGATGCCTTTTTCATT
297 T-AAA----A-AGC-AG--GAT-GC-CTTTTTCA-T-TTCAAA-ACCCA-CA---C-----GAGT
*** * * * ** * *
1424352 TCAAAGCTCACACGAGTTCATGGCACCCTTTAGTCCTTAAA-ATGCAGGATGCCTTTTTCGTTTA
339 T-GGTGGT--C-C-A-TT--TTG----------TCCTCAAAGA-GCAGGACACCTTTTTCTTTTC
* * * * * *
1424416 AAAACCCACA-TTGGTTGGTGGTCCATTTTGTCTTCAAAGAGCAGGACACCTTTTTCTTTTCAAA
385 AAAGCCCACACGT-GTTGGTGG-CCCTTTAGTCCTCAAAGAGCAGGACTCCTTTTTCTTTTCAAA
* * *
1424480 GCCCGCACATGTTGTTGGCACC
448 GCCCACACAAGTTGGTGGCACC
* *** * *
1424502 CTTTAGTCCTCAAAGAGCAAGACGTATTTTTCTTTTCAAAGCCCACA-GAAG-TTGATGGGACCC
1 CTTTAGTCCTCAAAGAGCAGGACCCCTTTTTCCTTTCAAAGCCCACACG-AGTTTG-TGGCACCC
* * * * * * *
1424565 TTTAGTCCTCAAATAGCAGGATGCCTTTTTCCTTTCGAAGCCCGCACGAGTTGGTGGCACCCTTC
64 TTTAGTTCTGAAAGAGCAGGATGCCTTTTTCCTTTCAAAGCCCACACGAGTTTGTGGCACCCTTT
* * * * * * * * *
1424630 AGTCCTCAAAAAGTAGGATGCCTTTTTCCTTTCAAAGCCCACACGAGTTAGTGGCACCTTTTAGT
129 AGTCTTCAAAGAGCAAGATGCCCTTTTCCTTTCAATGCCCACACGAGTTGGTGGCACCCTTCAGT
** *** * * *
1424695 C-C--TCAAAGAGCAGCATGCCTTTTTAAGTGGCACCCTTTAGTCCTCAAAGAGCAAGACG-CTT
194 CTCTTTCAAAGCCCA-CA---CAAGTT-GGT-GCACCCTTTAGTCCTCAAAGAGCAGGATGCCTT
* ** * * * **
1424756 TTTCCTTTCGAAGCCCACAC-AGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAAGACACCTTTTT
253 TTTCCTTTCAAAGCCCACACGAGTTCATGGCACCCTTTAGTCCTTAAAAAGCAGGATGCCTTTTT
* * * * * * * * * * * *
1424820 CATTTCAAAGCCTACACGAGTTGCTGGCACCCTTTAGTCGTCGAAGAGTAAGACACCTTTCTCCT
318 CATTTCAAAACCCACACGAGTTGGTGG-TCCATTTTGTCCTCAAAGAGCAGGACACCTTTTTCTT
* * * * *
1424885 TTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGTTCTAAAAGAGCAGGCCGCCTTTTTCTTTTC
382 TTCAAAGCCCACACGTGTTGGTGG--CCCTTTAGTCCTCAAAGAGCAGGACTCCTTTTTCTTTTC
1424950 AAAGCCCACACAAGTTGGTGGCACC
445 AAAGCCCACACAAGTTGGTGGCACC
* * ** *
1424975 CTTTAGTCCTCAAAAATCAGGATGCCTTTTTCCTTTCAAAGCCCACACAAGTTTGTGGCACCCTT
1 CTTTAGTCCTCAAAGAGCAGGACCCCTTTTTCCTTTCAAAGCCCACACGAGTTTGTGGCACCCTT
* * * * ** * * *
1425040 TAGTCCTTAAAGAGCAAGATGTCTTTTTCCTTTCAGCGCCCACACGTGTTGGTGGCACCCTTCAG
66 TAGTTCTGAAAGAGCAGGATGCCTTTTTCCTTTCAAAGCCCACACGAGTTTGTGGCACCCTTTAG
** * * **** ** * * * **
1425105 TCTCCTTTCAAAGCCCACACAAGTTGGTGGCACGCTTCAGT-CCTCA-AAGAGCAGGAT-G--CC
131 --T-C-TTCAAAGAGCA-AGATGCCCTTTTC-C-TTTCAATGCC-CACACGAGTTGG-TGGCACC
* * * * * * *
1425165 TTTC--TC-CTTTCAAAGCCAACACGAGTTGGTGACATCTTTTAGTCCTCAAAAAGCAGGTTGCC
187 CTTCAGTCTCTTTCAAAGCCCACACAAGTTGGTG-CACCCTTTAGTCCTCAAAGAGCAGGATGCC
* * * ** * ** * * *
1425227 TTTTTCGTTTCAAA-CCTACACGGGTTGGTGGC-CTCATTTTTTCCTCAAAGAGTAGGACT-CCT
251 TTTTTCCTTTCAAAGCCCACACGAGTTCATGGCAC-CCTTTAGTCCTTAAAAAGCAGGA-TGCCT
* * * * * * ** * * *
1425289 TTTTCTTTTCAAAGCCTACACGAGTTTGTGGCACCCTTTAATTCTGAAAGAGCAGGACGCCTTTT
314 TTTTCATTTCAAAACCCACACGAGTTGGTGG-TCCATTTTGTCCTCAAAGAGCAGGACACCTTTT
* * * * *
1425354 TCTTTTCAAAGCCCACACGAGTTTGTGACACCCTTTAGTCCTCAAAGAGCAAGA-TGCCCTTTTC
378 TCTTTTCAAAGCCCACACGTGTTGGTG--GCCCTTTAGTCCTCAAAGAGCAGGACT-CCTTTTTC
* * *
1425418 CTTTCAATGCCCACACGAGTTGGTGGCA-C
440 TTTTCAAAGCCCACACAAGTTGGTGGCACC
* * *
1425447 C---A-T--T-------CA-G-------TCTCCTTTCAAAGCCCACACAAGTTGGTGGCACCCTT
1 CTTTAGTCCTCAAAGAGCAGGACCCCTTTTTCCTTTCAAAGCCCACACGAGTTTGTGGCACCCTT
* * * * * **
1425491 TAGTCCTCAAATAGCAGGATGCCTTTTTCATTTCAAAGCTCACACGAGTTCATGGCACCCTTTAG
66 TAGTTCTGAAAGAGCAGGATGCCTTTTTCCTTTCAAAGCCCACACGAGTTTGTGGCACCCTTTAG
* * * * ** * **
1425556 TCCTT-AAA-ATGCAGGATGCCTTTTTCGTTTAAAAACCCACATTG-GTTGGTGGTCCATTTTGT
131 T-CTTCAAAGA-GCAAGATGCCCTTTTCCTTTCAATGCCCACA-CGAGTTGGTGG--CA----CC
* * * *
1425618 CTTCAAAGAGCAGGACACCTTTTTCTTTTCAAAGCCCGCACATGTTGTTGGCACCCTTTAGTCCT
187 CTT-------CA-G-------TCTC-TTTCAAAGCCCACACAAGTTGGT-GCACCCTTTAGTCCT
* * ** * * * *
1425683 CAAAGAGCAAGACGTATTTTTCTTTTCAAAGCCCACA-GAAGTTGATGGGACCCTTTAGTCCTCA
235 CAAAGAGCAGGATGCCTTTTTCCTTTCAAAGCCCACACG-AGTTCATGGCACCCTTTAGTCCTTA
* * * * * * * ** *
1425747 AATAGCAGGATGCCTTTTTCCTTTCGAAGCCCGCACGAGTTGGTGGCACCCTTCAGTCCTCAAAA
299 AAAAGCAGGATGCCTTTTTCATTTCAAAACCCACACGAGTTGGTGG-TCCATTTTGTCCTCAAAG
* ** * * *
1425812 AGTAGGATGCCTTTTTCCTTTCAAAGCCCACACGAGTTAGTGGCACCCTTTAGTCCTCAAAGAGC
363 AGCAGGACACCTTTTTCTTTTCAAAGCCCACACGTGTTGGTGG--CCCTTTAGTCCTCAAAGAGC
*
1425877 AGCA-TGCC----T-TTTT------------AA----GTGGCACC
426 AGGACT-CCTTTTTCTTTTCAAAGCCCACACAAGTTGGTGGCACC
* * * *
1425900 CTTTAGTCCTCAAAGAGCAAGA-CGCTTTTTCCTTTCGAAGCCCACAC-AGTTGGTGGCACCCTT
1 CTTTAGTCCTCAAAGAGCAGGACCCCTTTTTCCTTTCAAAGCCCACACGAGTTTGTGGCACCCTT
* * * ** * *
1425963 TAGTCCTCAAAGAGCAAGACACCTTTTTCATTTCAAAGCCTACACGAG-TTGCTGGCACCCTTTA
66 TAGTTCTGAAAGAGCAGGATGCCTTTTTCCTTTCAAAGCCCACACGAGTTTG-TGGCACCCTTTA
* * * *
1426027 GTCGTCGAAGAGTAAGA--CACCTTTCTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAG
130 GTCTTCAAAGAGCAAGATGC-CCTTT-TCCTTTCAATGCCCACACGAGTTGGTGGCACCC-----
*
1426090 TTCTAAAAGAGCAGGCCGCCTTTTTCTTTTCAAAGCCCACACAAGTTGGTGGCACCCTTTAGTCC
188 -T-T-------CA----G----TCTC-TTTCAAAGCCCACACAAGTTGGT-GCACCCTTTAGTCC
* * * * **
1426155 TCAAAAATCAGGATGCCTTTTTCCTTTCAAAGCCCGCACAAGTTTGTGGCACCCTTTAGTCCTTA
234 TCAAAGAGCAGGATGCCTTTTTCCTTTCAAAGCCCACACGAGTTCATGGCACCCTTTAGTCCTTA
* * * * *** * *
1426220 AAGAGCAAGATGTCTTTTTCCTTTCAGCGCCCACACGTGTTGGTGG--CA------CC-C----T
299 AAAAGCAGGATGCCTTTTTCATTTCAAAACCCACACGAGTTGGTGGTCCATTTTGTCCTCAAAGA
* * * ** *
1426272 TCA-G-------TCTCCTTTCAAAGCCCACACAAGTTGGTGGCACGCTTCAGTCCTCAAAGAGCA
364 GCAGGACACCTTTTTCTTTTCAAAGCCCACACGTGTTGGTGGC-C-CTTTAGTCCTCAAAGAGCA
* * * * * *
1426329 GGA-TGCCTTTCTCCTTTCAAAGCCAACACGAGTTGGTGACATC
427 GGACT-CCTTTTTCTTTTCAAAGCCCACACAAGTTGGTGGCACC
* * * *** * * * * *
1426372 TTTTAGTCCTCAAAAAGCTGGTTGCCTTTTTCGTTTCAAA-CCTACACGGGTTGGTGGC-CTCAT
1 CTTTAGTCCTCAAAGAGCAGGACCCCTTTTTCCTTTCAAAGCCCACACGAGTTTGTGGCAC-CCT
* * * * *
1426435 TT-TTTCCTCAAAGAGTAGGACT-CCTTTTTCTTTTCAAAGCCTACACGAGTTTGTGGCACCCTT
65 TTAGTT-CTGAAAGAGCAGGA-TGCCTTTTTCCTTTCAAAGCCCACACGAGTTTGTGGCACCCTT
* * * * * * * * * *
1426498 TAAT-TCTGAAAGAGCAGGACGCCTTTTTCTTTTCAAAGCCCACACGAGTTTGTGACACCCTTTA
128 TAGTCT-TCAAAGAGCAAGATGCCCTTTTCCTTTCAATGCCCACACGAGTTGGTGGCACCCTTCA
* * * *** * * **
1426562 GTC-C--TCAAAG---A-GCAAGATGCCCT-TTTCCTTTCAATGCC-CACACGAGTTGG-TGGCA
192 GTCTCTTTCAAAGCCCACACAAGTTG--GTGCACCCTTT-AGT-CCTCA-AAGAGCAGGAT-G--
* * ** * *
1426617 CCATTCAGTCTCCTTTCAAAGCCCACACAAGTTGGTGGCACCCTTTAGTCCTCAAATAGCAGGAT
249 CC-TT---TTTCCTTTCAAAGCCCACACGAGTTCATGGCACCCTTTAGTCCTTAAAAAGCAGGAT
* * ** * * * * **
1426682 GCCTTTTTCATTTCAAAGCTCACACGAGTTCATGGCACCCTTTAGTCCTTAAA-ATGCAGGATGC
310 GCCTTTTTCATTTCAAAACCCACACGAGTTGGTGG-TCCATTTTGTCCTCAAAGA-GCAGGACAC
* * * * * * * *
1426746 CTTTTTCGTTTAAAAACCCACA-TTGGTTGGTGGTCCATTTTGTCTTCAAAGAGCAGGACACCTT
373 CTTTTTCTTTTCAAAGCCCACACGT-GTTGGTGG-CCCTTTAGTCCTCAAAGAGCAGGACTCCTT
* * *
1426810 TTTCTTTTCAAAGCCCGCACATGTTGTTGGCACC
436 TTTCTTTTCAAAGCCCACACAAGTTGGTGGCACC
* *** * *
1426844 CTTTAGTCCTCAAAGAGCAAGACGTATTTTTCTTTTCAAAGCCCACA-GAAG-TTGATGGGACCC
1 CTTTAGTCCTCAAAGAGCAGGACCCCTTTTTCCTTTCAAAGCCCACACG-AGTTTG-TGGCACCC
* * * * * * *
1426907 TTTAGTCCTCAAATAGCAGGATGCCTTTTTCCTTTCGAAGCCCGCACGAGTTGGTGGCACCCTTC
64 TTTAGTTCTGAAAGAGCAGGATGCCTTTTTCCTTTCAAAGCCCACACGAGTTTGTGGCACCCTTT
* * * * * * * *
1426972 AGTCCTCAAAAAGTAGGATGCCTTTTTCCTTTCAAAGCCCACACGAGTTAGTGGCACCCTTTAGT
129 AGTCTTCAAAGAGCAAGATGCCCTTTTCCTTTCAATGCCCACACGAGTTGGTGGCACCCTTCAGT
** *** * * *
1427037 C-C--TCAAAGAGCAGCATGCCTTTTTAAGTGGCACCCTTTAGTCCTCAAAGAGCAAGACG-CTT
194 CTCTTTCAAAGCCCA-CA---CAAGTT-GGT-GCACCCTTTAGTCCTCAAAGAGCAGGATGCCTT
* ** * * * **
1427098 TTTCCTTTCGAAGCCCACAC-AGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAAGACACCTTTTT
253 TTTCCTTTCAAAGCCCACACGAGTTCATGGCACCCTTTAGTCCTTAAAAAGCAGGATGCCTTTTT
* * * * * * * * * * * *
1427162 CATTTCAAAGCCTACACGAGTTGCTGGCACCCTTTAGTCGTCGAAGAGTAAGACACCTTTCTCCT
318 CATTTCAAAACCCACACGAGTTGGTGG-TCCATTTTGTCCTCAAAGAGCAGGACACCTTTTTCTT
* * * * *
1427227 TTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGTTCTAAAAGAGCAGGCCGCCTTTTTCTTTTC
382 TTCAAAGCCCACACGTGTTGGTGG--CCCTTTAGTCCTCAAAGAGCAGGACTCCTTTTTCTTTTC
1427292 AAAGCCCACACAAGTTGGTGGCACC
445 AAAGCCCACACAAGTTGGTGGCACC
* * ** * *
1427317 CTTTAGTCCTCAAAAATCAGGATGCCTTTTTCCTTTCAAAGCCCGCACAAGTTTGTGGCACCCTT
1 CTTTAGTCCTCAAAGAGCAGGACCCCTTTTTCCTTTCAAAGCCCACACGAGTTTGTGGCACCCTT
* * * * ** * * *
1427382 TAGTCCTTAAAGAGCAAGATGTCTTTTTCCTTTCAGCGCCCACACGTGTTGGTGGCACCCTTCAG
66 TAGTTCTGAAAGAGCAGGATGCCTTTTTCCTTTCAAAGCCCACACGAGTTTGTGGCACCCTTTAG
* * * *** * * * **
1427447 TCTCCTTTCAAAGCCCACACAAGTTG--GTGGCACCCTTCAGT-CCTCA-AAGAGCAGGAT-G--
131 --T-C-TTCAAAG---A-GCAAGATGCCCT-TTTCCTTTCAATGCC-CACACGAGTTGG-TGGCA
* * * * * * *
1427505 CCTTTC--TC-CTTTCAAAGCCAACACGAGTTGGTGACATCTTTTAGTCCTCAAAAAGCAGGTTG
185 CCCTTCAGTCTCTTTCAAAGCCCACACAAGTTGGTG-CACCCTTTAGTCCTCAAAGAGCAGGATG
* * * ** * ** * * *
1427567 CCTTTTTCGTTTCAAA-CCTACACGGGTTGGTGGC-CTCATTTTTTCCTCAAAGAGTAGGACT-C
249 CCTTTTTCCTTTCAAAGCCCACACGAGTTCATGGCAC-CCTTTAGTCCTTAAAAAGCAGGA-TGC
* * * * * * ** * * *
1427629 CTTTTTCTTTTCAAAGCCTACACGAGTTTGTGGCACCCTTTAATTCTGAAAGAGCAGGACGCCTT
312 CTTTTTCATTTCAAAACCCACACGAGTTGGTGG-TCCATTTTGTCCTCAAAGAGCAGGACACCTT
* * * * *
1427694 TTTCTTTTCAAAGCCCACACGAGTTTGTGACACCCTTTAGTCCTCAAAGAGCAAGA-TGCCCTTT
376 TTTCTTTTCAAAGCCCACACGTGTTGGTG--GCCCTTTAGTCCTCAAAGAGCAGGACT-CCTTTT
* * *
1427758 TCCTTTCAATGCCCACACGAGTTGGTGGCA-C
438 TCTTTTCAAAGCCCACACAAGTTGGTGGCACC
* * *
1427789 C---A-T--T-------CA-G-------TCTCCTTTCAAAGCCCACACAAGTTGGTGGCACCCTT
1 CTTTAGTCCTCAAAGAGCAGGACCCCTTTTTCCTTTCAAAGCCCACACGAGTTTGTGGCACCCTT
* * * * * **
1427833 TAGTCCTCAAATAGCAGGATGCCTTTTTCATTTCAAAGCTCACACGAGTTCATGGCACCCTTTAG
66 TAGTTCTGAAAGAGCAGGATGCCTTTTTCCTTTCAAAGCCCACACGAGTTTGTGGCACCCTTTAG
* * * * ** * **
1427898 TCCTT-AAA-ATGCAGGATGCCTTTTTCGTTTAAAAACCCACATTG-GTTGGTGGTCCATTTTGT
131 T-CTTCAAAGA-GCAAGATGCCCTTTTCCTTTCAATGCCCACA-CGAGTTGGTGG--CA----CC
* * * *
1427960 CTTCAAAGAGCAGGACACCTTTTTCTTTTCAAAGCCCGCACATGTTGTTGGCACCCTTTAGTCCT
187 CTT-------CA-G-------TCTC-TTTCAAAGCCCACACAAGTTGGT-GCACCCTTTAGTCCT
* * ** * * * *
1428025 CAAAGAGCAAGACGTATTTTTCTTTTCAAAGCCCACA-GAAGTTGATGGGACCCTTTAGTCCTCA
235 CAAAGAGCAGGATGCCTTTTTCCTTTCAAAGCCCACACG-AGTTCATGGCACCCTTTAGTCCTTA
* * * * * * * ** *
1428089 AATAGCAGGATGCCTTTTTCCTTTCGAAGCCCGCACGAGTTGGTGGCACCCTTCAGTCCTCAAAA
299 AAAAGCAGGATGCCTTTTTCATTTCAAAACCCACACGAGTTGGTGG-TCCATTTTGTCCTCAAAG
* ** * * *
1428154 AGTAGGATGCCTTTTTCCTTTCAAAGCCCACACGAGTTAGTGGCACCCTTTAGTCCTCAAAGAGC
363 AGCAGGACACCTTTTTCTTTTCAAAGCCCACACGTGTTGGTGG--CCCTTTAGTCCTCAAAGAGC
*
1428219 AGCA-TGCC----T-TTTT------------AA----GTGGCACC
426 AGGACT-CCTTTTTCTTTTCAAAGCCCACACAAGTTGGTGGCACC
* * * *
1428242 CTTTAGTCCTCAAAGAGCAAGA-CGCTTTTTCCTTTCGAAGCCCACAC-AGTTGGTGGCACCCTT
1 CTTTAGTCCTCAAAGAGCAGGACCCCTTTTTCCTTTCAAAGCCCACACGAGTTTGTGGCACCCTT
* * * ** * *
1428305 TAGTCCTCAAAGAGCAAGACACCTTTTTCATTTCAAAGCCTACACGAG-TTGCTGGCACCCTTTA
66 TAGTTCTGAAAGAGCAGGATGCCTTTTTCCTTTCAAAGCCCACACGAGTTTG-TGGCACCCTTTA
* * * *
1428369 GTCGTCGAAGAGTAAGA--CACCTTTCTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAG
130 GTCTTCAAAGAGCAAGATGC-CCTTT-TCCTTTCAATGCCCACACGAGTTGGTGGCACCC-----
*
1428432 TTCTAAAAGAGCAGGCCGCCTTTTTCTTTTCAAAGCCCACACAAGTTGGTGGCACCCTTTAGTCC
188 -T-T-------CA----G----TCTC-TTTCAAAGCCCACACAAGTTGGT-GCACCCTTTAGTCC
* * * **
1428497 TCAAAAATCAGGATGCCTTTTTCCTTTCAAAGCCCACACAAGTTTGTGGCACCCTTTAGTCCTTA
234 TCAAAGAGCAGGATGCCTTTTTCCTTTCAAAGCCCACACGAGTTCATGGCACCCTTTAGTCCTTA
* * * * *** * *
1428562 AAGAGCAAGATGTCTTTTTCCTTTCAGCGCCCACACGTGTTGGTGG--CA------CC-C----T
299 AAAAGCAGGATGCCTTTTTCATTTCAAAACCCACACGAGTTGGTGGTCCATTTTGTCCTCAAAGA
* * * ** *
1428614 TCA-G-------TCTCCTTTCAAAGCCCACACAAGTTGGTGGCACCCTTCAGTCCTCAAAGAGCA
364 GCAGGACACCTTTTTCTTTTCAAAGCCCACACGTGTTGGTGG--CCCTTTAGTCCTCAAAGAGCA
* * * * * *
1428671 GGA-TGCCTTTCTCCTTTCAAAGCCAACACGAGTTGGTGACATC
427 GGACT-CCTTTTTCTTTTCAAAGCCCACACAAGTTGGTGGCACC
* * *** * * * * *
1428714 TTTTAGTCCTCAAAAAGCAGGTTGCCTTTTTCGTTTCAAA-CCTACACGGGTTGGTGGC-CTCAT
1 CTTTAGTCCTCAAAGAGCAGGACCCCTTTTTCCTTTCAAAGCCCACACGAGTTTGTGGCAC-CCT
* * * * *
1428777 TT-TTTCCTCAAAGAGTAGGACT-CCTTTTTCTTTTCAAAGCCTACACGAGTTTGTGGCACCCTT
65 TTAGTT-CTGAAAGAGCAGGA-TGCCTTTTTCCTTTCAAAGCCCACACGAGTTTGTGGCACCCTT
* * * * * * * *
1428840 TAGT-TCTGAAAGAGCAGGATGCCTTTTTCTTTTCAAAGCCCACACGAGTTTGTGACACCCTTTA
128 TAGTCT-TCAAAGAGCAAGATGCCCTTTTCCTTTCAATGCCCACACGAGTTGGTGGCACCCTTCA
* * * *** * * **
1428904 G--TC-TTCAAAG---A-GCAAGATGCCCT-TTTCCTTTCAATGCC-CACACGAGTTGG-TGGCA
192 GTCTCTTTCAAAGCCCACACAAGTTG--GTGCACCCTTT-AGT-CCTCA-AAGAGCAGGAT-G--
* * ** * *
1428959 CCATTCAGTCTCCTTTCAAAGCCCACACAAGTTGGTGGCACCCTTTAGTCCTCAAATAGCAGGAT
249 CC-TT---TTTCCTTTCAAAGCCCACACGAGTTCATGGCACCCTTTAGTCCTTAAAAAGCAGGAT
* * ** * * * * **
1429024 GCCTTTTTCATTTCAAAGCTCACACGAGTTCATGGCACCCTTTAGTCCTTAAA-ATGCAGGATGC
310 GCCTTTTTCATTTCAAAACCCACACGAGTTGGTGG-TCCATTTTGTCCTCAAAGA-GCAGGACAC
* * * * * * * *
1429088 CTTTTTCGTTTAAAAACCCACA-TTGGTTGGTGGTCCATTTTGTCTTCAAAGAGCAGGACACCTT
373 CTTTTTCTTTTCAAAGCCCACACGT-GTTGGTGG-CCCTTTAGTCCTCAAAGAGCAGGACTCCTT
* * *
1429152 TTTCTTTTCAAAGCCCGCACATGTTGTTGGCACC
436 TTTCTTTTCAAAGCCCACACAAGTTGGTGGCACC
* *** * *
1429186 CTTTAGTCCTCAAAGAGCAAGACGTATTTTTCTTTTCAAAGCCCACA-GAAG-TTGATGGGACCC
1 CTTTAGTCCTCAAAGAGCAGGACCCCTTTTTCCTTTCAAAGCCCACACG-AGTTTG-TGGCACCC
* * * ** * * *
1429249 TTTAGTCCTCAAATAGCAGGATGCCTTTTTCCTTTCGTAGCCCGCACGAGTTGGTGGCACCCTTC
64 TTTAGTTCTGAAAGAGCAGGATGCCTTTTTCCTTTCAAAGCCCACACGAGTTTGTGGCACCCTTT
* * * * * * *
1429314 AGTCCTCAAAAAGCAGGATGCCTTTTTCCTTTCAAAGCCCACACGAGTTAGTGGCACCCTTTAGT
129 AGTCTTCAAAGAGCAAGATGCCCTTTTCCTTTCAATGCCCACACGAGTTGGTGGCACCCTTCAGT
** * *** ** *
1429379 C-C--TCAAAGAGCAGGATGCCTTTTTGAGTGGCACCCTTTAGTCCGGAAAGAGCAAGATGCCTT
194 CTCTTTCAAAGCCCA-CA---CAAGTTG-GT-GCACCCTTTAGTCCTCAAAGAGCAGGATGCCTT
** * * * * **
1429441 TTTCCTTTCAAAGCCCACAC-AGTTGGTGGCACCCTTTAATCCTCAAAGAGCAAGACACCTTTTT
253 TTTCCTTTCAAAGCCCACACGAGTTCATGGCACCCTTTAGTCCTTAAAAAGCAGGATGCCTTTTT
* * * * * ** *
1429505 CCTTTCAAAGCCTACACGAGTTGCTGG--CACTCTTTAGTCCTCGAAGAGCAGGATGCTTTTTTC
318 CATTTCAAAACCCACACGAGTTGGTGGTCCA-T-TTT-GTCCTCAAAGAGCAGGACACCTTTTTC
* * * * * *
1429568 CTTTCAAAGCCCACAGGAGTTGGTGGCACCTTTTAGTCCTCAAAGAGTAGGACGCATTTTTCTTT
380 TTTTCAAAGCCCACACGTGTTGGTGGC-CC-TTTAGTCCTCAAAGAGCAGGACTCCTTTTTCTTT
* *
1429633 TCAAAGCTCATACAAGTTGGTGGCACC
443 TCAAAGCCCACACAAGTTGGTGGCACC
**
1429660 CTTTAGTCCTCAAAGAGCAGGACGTCTTTTTCCTTTCAAAGCCCACACGAGTTTGTGGCACCCTT
1 CTTTAGTCCTCAAAGAGCAGGACCCCTTTTTCCTTTCAAAGCCCACACGAGTTTGTGGCACCCTT
* * * * * *
1429725 TAATCCTCAAAGAGCAAGATGCCTTTTTCCTTTCAACGCCCACACGAGTTGGTGGCACCCTTTAG
66 TAGTTCTGAAAGAGCAGGATGCCTTTTTCCTTTCAAAGCCCACACGAGTTTGTGGCACCCTTTAG
* * * ******* * * **
1429790 TCTCCTTTCAAAACCCACACAAGTTGGTGGCACCCTTT-AGT-CCTCA-AAGAGCAGGAT-G---
131 --T-C-TTC-AAA--GA-GCAAGATGCCCTTTTCCTTTCAATGCC-CACACGAGTTGG-TGGCAC
** * * * * * * * *
1429848 CCTT-TTTC-CTTTCTAAGCCCACACGAGTTCGTGGCACCATTTAGTCCTTAAAAAGAAGGATTC
186 CCTTCAGTCTCTTTCAAAGCCCACACAAGTTGGT-GCACCCTTTAGTCCTCAAAGAGCAGGATGC
* * * ** * * * * * *
1429911 CTTTTTCATTTCAAAACTCACACGAGTTGGTGG-TCCATTTTGTCCTCAAAGAGCAGGACAG-CT
250 CTTTTTCCTTTCAAAGCCCACACGAGTTCATGGCACCCTTTAGTCCTTAAAAAGCAGGA-TGCCT
* * * * * * * * * * **
1429974 TTTTCTTTTCAAAGCCCATATGTGTAGTTGGTGCCCTTTAGTCCTCAAAGAGCAAGA-AGTATTT
314 TTTTCATTTCAAAACCCACACGAGTTGGTGGT-CCATTTTGTCCTCAAAGAGCAGGACA-CCTTT
* * * *
1430038 TTCCTTTCAAAGCCCATA-GAAGTTGGTGGCACCCTTTAATCCTCAAAGAGCAGGA-TGCCTTTT
377 TTCTTTTCAAAGCCCACACG-TGTTGGTGG--CCCTTTAGTCCTCAAAGAGCAGGACT-CCTTTT
* * *
1430101 TCCTTTCAAAGCCCGCACGAGTTGGTGGCACC
438 TCTTTTCAAAGCCCACACAAGTTGGTGGCACC
** *
1430133 CTTTAGTCCTCAAAGAGCAGGATGCC---TT--TTT----G-----AC-------TGGCACCCGT
1 CTTTAGTCCTCAAAGAGCAGGACCCCTTTTTCCTTTCAAAGCCCACACGAGTTTGTGGCACCCTT
* * * *
1430177 TAG-TCATCAAAGAGCAAGACGCCTTTTTCCTTTCAAAGCCCACAC-AGTTTGTGGAACCCTTTA
66 TAGTTC-TGAAAGAGCAGGATGCCTTTTTCCTTTCAAAGCCCACACGAGTTTGTGGCACCCTTTA
* * ** * * * ** * **
1430240 GTCCTCTAAGAGCAAGACACCTTTTTCCTTTCGAA-GCCTACCCGAGCAAGAT-G---CCTT-TT
130 GTCTTCAAAGAGCAAGATGCCCTTTTCCTTTC-AATGCCCACACGAG-TTGGTGGCACCCTTCAG
* *
1430299 TC-CTTTCAACGCCCACACGAGTTGGTGGCACCCTTCAGTCTCCTTTCAAAGCCCACACAAGTTG
193 TCTCTTTCAAAGCCCACACAAGTTGGT-G-------CA--C-CCTTT-------------A----
* * * *
1430363 GTGGCACCCTTTAGTCCTCAAAGAGAAGGATGCCTTTTTCCTTTCTAAGCCCACACGCGTTCGTG
230 GT-----CC--T------CAAAGAGCAGGATGCCTTTTTCCTTTCAAAGCCCACACGAGTTCATG
* * *
1430428 GCTCCATTTAGTCCTTAAAAAGCAGGATTCCTTTTTCATTTCAAAACCCACACGAGTTGGTGGTC
282 GCACCCTTTAGTCCTTAAAAAGCAGGATGCCTTTTTCATTTCAAAACCCACACGAGTTGGTGGTC
* *
1430493 CATTTTGTCCTCAAAGAGCAGGACACCTTTTTCTTTTCAAAGCCCACAGGTGTTGTTGGTACCCT
347 CATTTTGTCCTCAAAGAGCAGGACACCTTTTTCTTTTCAAAGCCCACACGTGTTGGTGG--CCCT
* * * * *
1430558 TTAGTCCTCAAAGAGCAAGACGT-ATTTTTCCTTTCAAAGCCCATAGAAGTTGGTGGCACC
410 TTAGTCCTCAAAGAGCAGGAC-TCCTTTTTCTTTTCAAAGCCCACACAAGTTGGTGGCACC
* * ** * *
1430618 CTTTAGTCCTAAAAGAGAAGGATGCCTTTTTCCTTTCAAAGCCCGCACGAGTTGGTGGCACCCTT
1 CTTTAGTCCTCAAAGAGCAGGACCCCTTTTTCCTTTCAAAGCCCACACGAGTTTGTGGCACCCTT
* * * * *
1430683 TAGTCCTCAAAAAGCAGGATGCCTTTCTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAG
66 TAGTTCTGAAAGAGCAGGATGCCTTTTTCCTTTCAAAGCCCACACGAGTTTGTGGCACCCTTTAG
* ** * *** ***
1430748 TCCTCAAAGAGCATCATG-CC--TT--TTTGAATGGCACC-CTTTAGTCCTCAAAGAGCAAGACG
131 TCTTCAAAGAGCAAGATGCCCTTTTCCTTTCAAT-GC-CCACACGAGT--T-GGTG-GC---AC-
** * **
1430807 CCTT-TTTC-CTTTCAAAGCCCACAC-AGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAAGACAC
186 CCTTCAGTCTCTTTCAAAGCCCACACAAGTTGGT-GCACCCTTTAGTCCTCAAAGAGCAGGATGC
* * ** ** * * **
1430869 CTTTTTCATTTCAAAGCCTACACGAGTTGTTGGCACCCTTTAGTCCTCGAAGAGTAGGACACCTT
250 CTTTTTCCTTTCAAAGCCCACACGAGTTCATGGCACCCTTTAGTCCTTAAAAAGCAGGATGCCTT
* * * * * * * * ** *
1430934 TTTCCTTTCAAAGCTCACACAAGTTGCTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTATTT
315 TTTCATTTCAAAACCCACACGAGTTGGTGG-TCCATTTTGTCCTCAAAGAGCAGGACACCTTTTT
* * * * * * *
1430999 CATTTCAAAGCCCACACGAGTTCGTGGCACCCTTTAGTCCTTAAAAACCAGGA-TGCCTTTTTCG
379 CTTTTCAAAGCCCACACGTGTTGGTGG--CCCTTTAGTCCTCAAAGAGCAGGACT-CCTTTTTCT
* * *** *
1431063 TTTAAAAACCCACATGGGTTGGTGG-TCC
441 TTTCAAAGCCCACACAAGTTGGTGGCACC
* * * * * *
1431091 ATTTTGTCCTCAAAGAGCAGGACACCTTTTTCTTTTCAAAGCCCACACGTG-TTGTTGGTACCCT
1 CTTTAGTCCTCAAAGAGCAGGACCCCTTTTTCCTTTCAAAGCCCACACGAGTTTG-TGGCACCCT
* * * * ** * *
1431155 TTAGTCCTCAAAGAGCAAGACGTATTTTTCCTTTCAAAGCCCATA-GAAGTTGGTGGCACCCTTT
65 TTAGTTCTGAAAGAGCAGGATGCCTTTTTCCTTTCAAAGCCCACACG-AGTTTGTGGCACCCTTT
* * * * *
1431219 AGTCCTCAAAGAG-AAGGATGCCTTTTTCCTTTCAAAGCCCGCACGAGTTGGTGGCACCCTTTAG
129 AGTCTTCAAAGAGCAA-GATGCCCTTTTCCTTTCAATGCCCACACGAGTTGGTGGCACCCTTCAG
* * * **** * **
1431283 TC-C-TT-AAA----A-AGCAGGATGCCTTTTTCCTTTCAAAG-CC-CACACGAGTTGG-TGCCA
193 TCTCTTTCAAAGCCCACA-CAAGTTG-GTGCACCCTTT---AGTCCTCA-AAGAGCAGGATG---
** *** * * * *
1431337 CCCTTTTGTCC--TCAAAGAGCAGCATGCCTTTTTAAGTGGCACCCTTTAGTCCTCAAAGAGCAA
249 -CCTTTT-TCCTTTCAAAGCCCA-CA---CGAGTTCA-TGGCACCCTTTAGTCCTTAAAAAGCAG
** * * * * * * *
1431400 GACACCTTTTTCCTTTCGAAGCCCACAC-AGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAAGAC
307 GATGCCTTTTTCATTTCAAAACCCACACGAGTTGGTGG-TCCATTTTGTCCTCAAAGAGCAGGAC
* * * * * * * *
1431464 ACCTTTTTCATTTCAAAGCCTACACGAGTTGTTGCCACCCTTTAGTCCTCGAAGAGTAGGACACC
371 ACCTTTTTCTTTTCAAAGCCCACACGTGTTGGTG--GCCCTTTAGTCCTCAAAGAGCAGGACTCC
* *
1431529 TTTTTCCTTTCAAAGCTCACACAAGTTGGTGGCACC
434 TTTTTCTTTTCAAAGCCCACACAAGTTGGTGGCACC
** * * *
1431565 CTTTAGTCCTCAAAGAGCAGGATGCCTATTTCATTTCAAAGCCCACACGAGTTCGTGGCACCCTT
1 CTTTAGTCCTCAAAGAGCAGGACCCCTTTTTCCTTTCAAAGCCCACACGAGTTTGTGGCACCCTT
* * * * * * * * * * * *
1431630 TAGTCCTTAAA-AACTAGGATGCCTTTTTCGTTTAAAAACCCACATGGGTTGGTGG-TCCATTTT
66 TAGTTCTGAAAGAGC-AGGATGCCTTTTTCCTTTCAAAGCCCACACGAGTTTGTGGCACCCTTTA
* * * * * * * * *
1431693 GTCCTCAAAGAGCAGGATACCTTTTTCTTTTCAAAGCCCACACGTGTTGTTGGTACCCTTTAGTC
130 GTCTTCAAAGAGCAAGATGCCCTTTTCCTTTCAATGCCCACACGAGTTGGTGGCACCC-----T-
* * * *
1431758 CTCAAAGAGCAAGACGTATTTTTCCTTTCAAAGCCCATAGAAGTTGGTGGCACCCTTTAATCCTC
189 -T-------C---A-G----TCT-CTTTCAAAGCCCACACAAGTTGGT-GCACCCTTTAGTCCTC
* ** *
1431823 AAAGAGCAGGATGCCTTTTTCCTTTCAAAGCCCGCACGAGTTGGTGGCACCCTTTAGTCCTCAAA
236 AAAGAGCAGGATGCCTTTTTCCTTTCAAAGCCCACACGAGTTCATGGCACCCTTTAGTCCTTAAA
*
1431888 GAGCAGGATGCCTTTTT
301 AAGCAGGATGCCTTTTT
1431905 GACTGGCACC
Statistics
Matches: 16215, Mismatches: 3365, Indels: 4337
0.68 0.14 0.18
Matches are distributed among these distances:
409 33 0.00
410 48 0.00
411 78 0.00
412 18 0.00
413 2 0.00
416 1 0.00
417 1 0.00
418 2 0.00
419 3 0.00
421 85 0.01
422 7 0.00
423 2 0.00
424 3 0.00
425 1 0.00
426 3 0.00
427 2 0.00
428 4 0.00
429 2 0.00
431 1 0.00
437 6 0.00
438 10 0.00
439 8 0.00
440 19 0.00
441 54 0.00
442 152 0.01
443 69 0.00
444 54 0.00
445 95 0.01
446 39 0.00
447 67 0.00
448 32 0.00
449 58 0.00
450 156 0.01
451 823 0.05
452 538 0.03
453 410 0.03
454 55 0.00
455 30 0.00
456 34 0.00
457 32 0.00
458 24 0.00
459 32 0.00
460 24 0.00
461 10 0.00
462 19 0.00
463 21 0.00
464 29 0.00
465 58 0.00
466 43 0.00
467 37 0.00
468 46 0.00
469 60 0.00
470 89 0.01
471 66 0.00
472 1215 0.07
473 5065 0.31
474 1679 0.10
475 213 0.01
476 85 0.01
477 91 0.01
478 80 0.00
479 54 0.00
480 92 0.01
481 130 0.01
482 285 0.02
483 15 0.00
484 13 0.00
485 171 0.01
486 63 0.00
487 22 0.00
488 10 0.00
489 12 0.00
490 34 0.00
491 55 0.00
492 191 0.01
493 128 0.01
494 425 0.03
495 97 0.01
496 12 0.00
497 16 0.00
498 41 0.00
499 25 0.00
500 7 0.00
501 19 0.00
502 110 0.01
503 275 0.02
504 145 0.01
505 16 0.00
506 67 0.00
507 44 0.00
508 24 0.00
509 27 0.00
510 27 0.00
511 10 0.00
512 39 0.00
513 276 0.02
514 316 0.02
515 10 0.00
516 6 0.00
517 11 0.00
518 8 0.00
520 2 0.00
521 2 0.00
522 2 0.00
523 2 0.00
524 3 0.00
526 8 0.00
527 2 0.00
528 2 0.00
529 1 0.00
530 17 0.00
531 5 0.00
532 9 0.00
533 9 0.00
534 180 0.01
535 364 0.02
536 9 0.00
537 3 0.00
538 1 0.00
539 10 0.00
542 70 0.00
543 44 0.00
544 17 0.00
546 2 0.00
547 1 0.00
548 1 0.00
549 2 0.00
552 1 0.00
553 2 0.00
554 2 0.00
556 3 0.00
558 1 0.00
559 1 0.00
560 1 0.00
561 6 0.00
562 2 0.00
563 1 0.00
565 64 0.00
566 4 0.00
568 1 0.00
569 1 0.00
570 6 0.00
ACGTcount: A:0.24, C:0.27, G:0.19, T:0.30
Consensus pattern (469 bp):
CTTTAGTCCTCAAAGAGCAGGACCCCTTTTTCCTTTCAAAGCCCACACGAGTTTGTGGCACCCTT
TAGTTCTGAAAGAGCAGGATGCCTTTTTCCTTTCAAAGCCCACACGAGTTTGTGGCACCCTTTAG
TCTTCAAAGAGCAAGATGCCCTTTTCCTTTCAATGCCCACACGAGTTGGTGGCACCCTTCAGTCT
CTTTCAAAGCCCACACAAGTTGGTGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTTTCCTTT
CAAAGCCCACACGAGTTCATGGCACCCTTTAGTCCTTAAAAAGCAGGATGCCTTTTTCATTTCAA
AACCCACACGAGTTGGTGGTCCATTTTGTCCTCAAAGAGCAGGACACCTTTTTCTTTTCAAAGCC
CACACGTGTTGGTGGCCCTTTAGTCCTCAAAGAGCAGGACTCCTTTTTCTTTTCAAAGCCCACAC
AAGTTGGTGGCACC
Found at i:1410891 original size:102 final size:102
Alignment explanation
Indices: 1410713--1410897 Score: 307
Period size: 102 Copynumber: 1.8 Consensus size: 102
1410703 TGCCTTTTTC
* * *
1410713 CTTTCAAAGCCCACACAAGTTTGTGGCACCCTTTAGTCTTCAAAGAGCAAGATGCCCTTTTCCTT
1 CTTTCAAAGCCCACACAAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAAGATGCCCTTTTCATT
* *
1410778 TCAATGTCCACACGAGTTGGTGGCACTATTCAGTCTT
66 TCAAAGCCCACACGAGTTGGTGGCACTATTCAGTCTT
* *
1410815 CTTTCAAAGCCCACACAAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTTTCATT
1 CTTTCAAAGCCCACACAAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAAGATGCCCTTTTCATT
1410880 TCAAAGCCCACACGAGTT
66 TCAAAGCCCACACGAGTT
1410898 CATGGCACCC
Statistics
Matches: 76, Mismatches: 7, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
102 76 1.00
ACGTcount: A:0.25, C:0.28, G:0.18, T:0.29
Consensus pattern (102 bp):
CTTTCAAAGCCCACACAAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAAGATGCCCTTTTCATT
TCAAAGCCCACACGAGTTGGTGGCACTATTCAGTCTT
Found at i:1410913 original size:62 final size:62
Alignment explanation
Indices: 1410816--1411161 Score: 444
Period size: 62 Copynumber: 5.6 Consensus size: 62
1410806 TTCAGTCTTC
* *
1410816 TTTCAAAGCCCACACAAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTTTCA
1 TTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTTTCT
** * * *
1410878 TTTCAAAGCCCACACGAGTTCATGGCACCCTTTAGTCCTTAAAAAGCAGGATGCCTTTTTCG
1 TTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTTTCT
* * * * * * * * ***
1410940 TTTAAAAACCCGCATGGGTTGGTGG-TCCATTTTGTCCTCAAAGAGCAGGGCACCTTTTTCT
1 TTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTTTCT
1411001 TTTCAAAGCCCACAC-ATGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTTTCT
1 TTTCAAAGCCCACACGA-GTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTTTCT
* * * *
1411063 TTTCAAAGCCCACACGAGTTGGTGGCACCTTTTAGTTCTGAAAGAGCAGGATGCCTTTTTCC
1 TTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTTTCT
* * *
1411125 TTTCAAAGCCCACACAAGTTTGCGGCACCCTTTAGTC
1 TTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGTC
1411162 TCCTTTCAAA
Statistics
Matches: 239, Mismatches: 42, Indels: 6
0.83 0.15 0.02
Matches are distributed among these distances:
61 46 0.19
62 192 0.80
63 1 0.00
ACGTcount: A:0.24, C:0.27, G:0.20, T:0.30
Consensus pattern (62 bp):
TTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTTTCT
Found at i:1410963 original size:164 final size:164
Alignment explanation
Indices: 1410652--1410964 Score: 430
Period size: 164 Copynumber: 1.9 Consensus size: 164
1410642 CCCTTTTTCT
* * * * * *
1410652 TTTCAAAGCCTACACGAGTTTGTGGCACCCTTTAGTTCTGAAAGAGCAGGATGCCTTTTTCCTTT
1 TTTCAAAGCCCACACAAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTTTCATTT
** * *
1410717 CAAAGCCCACACAAGTTTGTGGCACCCTTTAGTCTTCAAAGAGCAAGATGCCCTTTTCCTTTCAA
66 CAAAGCCCACACAAGTTCATGGCACCCTTTAGTCTTCAAAAAGCAAGATGCCCTTTTCCTTTAAA
***
1410782 TGTCCACACGAGTTGGTGGCACTATTCAGTCTTC
131 AACCCACACGAGTTGGTGGCACTATTCAGTCTTC
1410816 TTTCAAAGCCCACACAAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTTTCATTT
1 TTTCAAAGCCCACACAAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTTTCATTT
* * * *
1410881 CAAAGCCCACACGAGTTCATGGCACCCTTTAGTCCTT-AAAAAGCAGGATGCCTTTTTCGTTTAA
66 CAAAGCCCACACAAGTTCATGGCACCCTTTAGT-CTTCAAAAAGCAAGATGCCCTTTTCCTTTAA
* * *
1410945 AAACCCGCATGGGTTGGTGG
130 AAACCCACACGAGTTGGTGG
1410965 TCCATTTTGT
Statistics
Matches: 128, Mismatches: 20, Indels: 2
0.85 0.13 0.01
Matches are distributed among these distances:
164 125 0.98
165 3 0.02
ACGTcount: A:0.24, C:0.26, G:0.20, T:0.30
Consensus pattern (164 bp):
TTTCAAAGCCCACACAAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTTTCATTT
CAAAGCCCACACAAGTTCATGGCACCCTTTAGTCTTCAAAAAGCAAGATGCCCTTTTCCTTTAAA
AACCCACACGAGTTGGTGGCACTATTCAGTCTTC
Found at i:1411005 original size:123 final size:123
Alignment explanation
Indices: 1410824--1411161 Score: 419
Period size: 123 Copynumber: 2.7 Consensus size: 123
1410814 TCTTTCAAAG
* **
1410824 CCCACACAAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTTTCATTTCAAAGCCC
1 CCCACACGAGTTGGTGGCACATTTTAGTCCTCAAAGAGCAGGATGCCTTTTTCATTTCAAAGCCC
* *
1410889 ACACGAGTTCATGGCACCCTTTAGTCCTTAAAAAGCAGGATGCCTTTTTCGTTTAAAAA
66 ACAC-AGTTCGTGGCACCCTTTAGTCCTCAAAAAGCAGGATGCCTTTTTCGTTTAAAAA
* * * *** *
1410948 CCCGCATGGGTTGGTGGTC-CATTTT-GTCCTCAAAGAGCAGGGCACCTTTTTCTTTTCAAAGCC
1 CCCACACGAGTTGGTGG-CACATTTTAGTCCTCAAAGAGCAGGATGCCTTTTTCATTTCAAAGCC
* * * * *
1411011 CACACATGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTTTCTTTTCAAAG
65 CACACA-GTTCGTGGCACCCTTTAGTCCTCAAAAAGCAGGATGCCTTTTTCGTTTAAAAA
* * * *
1411071 CCCACACGAGTTGGTGGCACCTTTTAGTTCTGAAAGAGCAGGATGCCTTTTTCCTTTCAAAGCCC
1 CCCACACGAGTTGGTGGCACATTTTAGTCCTCAAAGAGCAGGATGCCTTTTTCATTTCAAAGCCC
* *
1411136 ACACAAGTTTGCGGCACCCTTTAGTC
66 ACAC-AGTTCGTGGCACCCTTTAGTC
1411162 TCCTTTCAAA
Statistics
Matches: 180, Mismatches: 29, Indels: 10
0.82 0.13 0.05
Matches are distributed among these distances:
122 2 0.01
123 104 0.58
124 72 0.40
125 2 0.01
ACGTcount: A:0.23, C:0.27, G:0.20, T:0.30
Consensus pattern (123 bp):
CCCACACGAGTTGGTGGCACATTTTAGTCCTCAAAGAGCAGGATGCCTTTTTCATTTCAAAGCCC
ACACAGTTCGTGGCACCCTTTAGTCCTCAAAAAGCAGGATGCCTTTTTCGTTTAAAAA
Found at i:1411168 original size:40 final size:40
Alignment explanation
Indices: 1411122--1411202 Score: 135
Period size: 40 Copynumber: 2.0 Consensus size: 40
1411112 GATGCCTTTT
* *
1411122 TCCTTTCAAAGCCCACACAAGTTTGCGGCACCCTTTAGTC
1 TCCTTTCAAAGCCCACACAAGTTGGCGGCACCCATTAGTC
*
1411162 TCCTTTCAAAGCCCACACAAGTTGGTGGCACCCATTAGTC
1 TCCTTTCAAAGCCCACACAAGTTGGCGGCACCCATTAGTC
1411202 T
1 T
1411203 TCAAAAAGCA
Statistics
Matches: 38, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
40 38 1.00
ACGTcount: A:0.23, C:0.33, G:0.16, T:0.27
Consensus pattern (40 bp):
TCCTTTCAAAGCCCACACAAGTTGGCGGCACCCATTAGTC
Found at i:1411190 original size:102 final size:102
Alignment explanation
Indices: 1411063--1411246 Score: 289
Period size: 102 Copynumber: 1.8 Consensus size: 102
1411053 GCCTTTTTCT
* ** * *
1411063 TTTCAAAGCCCACACGAGTTGGTGGCACCTTTTAGT-TCTGAAAGAGCAGGATGCCTTTTTCCTT
1 TTTCAAAGCCCACACAAGTTGGTGGCACCCATTAGTCT-TCAAAAAGCAGGATGCCTTTTTCCTT
1411127 TCAAAGCCCACACAAGTTTGCGGCACCCTTTAGTCTCC
65 TCAAAGCCCACACAAGTTTGCGGCACCCTTTAGTCTCC
*
1411165 TTTCAAAGCCCACACAAGTTGGTGGCACCCATTAGTCTTCAAAAAGCAGGATGCTTTTTTCCTTT
1 TTTCAAAGCCCACACAAGTTGGTGGCACCCATTAGTCTTCAAAAAGCAGGATGCCTTTTTCCTTT
*
1411230 CAAAGCCCACACGAGTT
66 CAAAGCCCACACAAGTT
1411247 GGTGACACCT
Statistics
Matches: 74, Mismatches: 7, Indels: 2
0.89 0.08 0.02
Matches are distributed among these distances:
102 73 0.99
103 1 0.01
ACGTcount: A:0.25, C:0.28, G:0.18, T:0.29
Consensus pattern (102 bp):
TTTCAAAGCCCACACAAGTTGGTGGCACCCATTAGTCTTCAAAAAGCAGGATGCCTTTTTCCTTT
CAAAGCCCACACAAGTTTGCGGCACCCTTTAGTCTCC
Found at i:1411262 original size:62 final size:62
Alignment explanation
Indices: 1411162--1411295 Score: 196
Period size: 62 Copynumber: 2.2 Consensus size: 62
1411152 CCCTTTAGTC
* * *
1411162 TCCTTTCAAAGCCCACACAAGTTGGTGGCACCCATTAGTCTTCAAAAAGCAGGATGCTTTTT
1 TCCTTTCAAAGCCCACACAAGTTGGTGACACCCATTAGTCCTCAAAAAGCAGGATGCCTTTT
* ** *
1411224 TCCTTTCAAAGCCCACACGAGTTGGTGACACCTTTTAGTCCTCAAAAAGCAGGGTGCCTTTT
1 TCCTTTCAAAGCCCACACAAGTTGGTGACACCCATTAGTCCTCAAAAAGCAGGATGCCTTTT
*
1411286 TCGTTTCAAA
1 TCCTTTCAAA
1411296 CCTACTCGGG
Statistics
Matches: 64, Mismatches: 8, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
62 64 1.00
ACGTcount: A:0.26, C:0.26, G:0.18, T:0.30
Consensus pattern (62 bp):
TCCTTTCAAAGCCCACACAAGTTGGTGACACCCATTAGTCCTCAAAAAGCAGGATGCCTTTT
Found at i:1411425 original size:62 final size:62
Alignment explanation
Indices: 1411348--1411541 Score: 230
Period size: 62 Copynumber: 3.1 Consensus size: 62
1411338 ACTCCTTTTT
* * * * *
1411348 CTTTAGTCTTCAAAGAGCACGACCCTTTTTTTTTTTCAAAGCCTACACGGGTTTGTGGCACC
1 CTTTAGTCCTCAAAGAGCAAGACCCTTTTTTCTTTTCAAAGCCCACACGAGTTTGTGGCACC
* * * * *
1411410 TTTTAGTTCTGAAAGAGCATGACCCATTTTTCCTTTT-AAAGCCCACACGAGTTTGTGGCACC
1 CTTTAGTCCTCAAAGAGCAAGACCC-TTTTTTCTTTTCAAAGCCCACACGAGTTTGTGGCACC
* * *
1411472 CTTTAGTCCTCAAAGAGCAAGATTCC-TTTTTCTTTTCAATGCCCACACGAGTTGGTGGCACC
1 CTTTAGTCCTCAAAGAGCAAGA-CCCTTTTTTCTTTTCAAAGCCCACACGAGTTTGTGGCACC
*
1411534 CTTCAGTC
1 CTTTAGTC
1411542 TCTTTTCAAA
Statistics
Matches: 111, Mismatches: 18, Indels: 6
0.82 0.13 0.04
Matches are distributed among these distances:
61 9 0.08
62 91 0.82
63 11 0.10
ACGTcount: A:0.22, C:0.26, G:0.18, T:0.34
Consensus pattern (62 bp):
CTTTAGTCCTCAAAGAGCAAGACCCTTTTTTCTTTTCAAAGCCCACACGAGTTTGTGGCACC
Found at i:1411557 original size:40 final size:40
Alignment explanation
Indices: 1411502--1411581 Score: 124
Period size: 40 Copynumber: 2.0 Consensus size: 40
1411492 GATTCCTTTT
* * *
1411502 TCTTTTCAATGCCCACACGAGTTGGTGGCACCCTTCAGTC
1 TCTTTTCAAAGCCCACACAAGTTGGTAGCACCCTTCAGTC
*
1411542 TCTTTTCAAAGCCCACACAAGTTGGTAGCACCCTTTAGTC
1 TCTTTTCAAAGCCCACACAAGTTGGTAGCACCCTTCAGTC
1411582 CTCAAAGAGC
Statistics
Matches: 36, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
40 36 1.00
ACGTcount: A:0.21, C:0.31, G:0.17, T:0.30
Consensus pattern (40 bp):
TCTTTTCAAAGCCCACACAAGTTGGTAGCACCCTTCAGTC
Found at i:1411609 original size:164 final size:164
Alignment explanation
Indices: 1411227--1411839 Score: 635
Period size: 164 Copynumber: 3.8 Consensus size: 164
1411217 GCTTTTTTCC
* * * * * *
1411227 TTTCAAAGCCCACACGAGTTGGTGACACCTTTTAGTCCTCAAAAAGCAGGGTGCCTTTTTCGTTT
1 TTTCAAAGCCCACACAAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTTTCCTTT
* * * *
1411292 CAAA-CCTACTCGGGTTGGTGGC-CTCATTTT-GTCCTCAAAGAGTAGGACT-CCTTTTT-CTTT
66 CAAAGCCCACACGAGTTGGTGGCAC-C-TTTTAGTCCTCAAAGAGCAGGA-TGCCTTTTTCCTTT
* ** * * * * *
1411352 ---AGTCTTCA-AAG--AGC-ACGACCCTT--TTTTTT
128 CAAAGCCCACACAAGTTGGCGGC-ACCCTTCAGTCTCT
* ** * * * * * *
1411381 TTTCAAAGCCTACACGGGTTTGTGGCACCTTTTAGTTCTGAAAGAGCATGA-CCCATTTTTCCTT
1 TTTCAAAGCCCACACAAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCC-TTTTTCCTT
* * * * * *
1411445 TTAAAGCCCACACGAGTTTGTGGCACCCTTTAGTCCTCAAAGAGCAAGATTCCTTTTTCTTTTCA
65 TCAAAGCCCACACGAGTTGGTGGCACCTTTTAGTCCTCAAAGAGCAGGATGCCTTTTTCCTTTCA
* * *
1411510 ATGCCCACACGAGTTGGTGGCACCCTTCAGTCTCT
130 AAGCCCACACAAGTTGGCGGCACCCTTCAGTCTCT
*
1411545 TTTCAAAGCCCACACAAGTTGGTAGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTTTCCTTT
1 TTTCAAAGCCCACACAAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTTTCCTTT
* *
1411610 CAAAGCCCACACGAGTTGGTGGCACCTTTTAGTTCTGAAAGAGCAGGATGCCTTTTTCCTTTCAA
66 CAAAGCCCACACGAGTTGGTGGCACCTTTTAGTCCTCAAAGAGCAGGATGCCTTTTTCCTTTCAA
* * *
1411675 AGCCCACACAAGTTTGCGGCACCCTTTAGTCTCC
131 AGCCCACACAAGTTGGCGGCACCCTTCAGTCTCT
* * *
1411709 TTTCAAAGCCCACACAAGTTGGTGGCACCCATTAGTCCTCAAAAAGCAGGATGCTTTTTTCCTTT
1 TTTCAAAGCCCACACAAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTTTCCTTT
* * * *
1411774 CAAAGCCCACACGAGTTGGTGACACCTTTTAGTCCTCAAAAAGCAGGGTGCCTTTTTCGTTTCAA
66 CAAAGCCCACACGAGTTGGTGGCACCTTTTAGTCCTCAAAGAGCAGGATGCCTTTTTCCTTTCAA
1411839 A
131 A
1411840 CCTACTCGGG
Statistics
Matches: 378, Mismatches: 65, Indels: 22
0.81 0.14 0.05
Matches are distributed among these distances:
153 2 0.01
154 58 0.15
155 37 0.10
156 4 0.01
159 4 0.01
160 2 0.01
162 7 0.02
163 1 0.00
164 261 0.69
165 2 0.01
ACGTcount: A:0.23, C:0.27, G:0.19, T:0.31
Consensus pattern (164 bp):
TTTCAAAGCCCACACAAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTTTCCTTT
CAAAGCCCACACGAGTTGGTGGCACCTTTTAGTCCTCAAAGAGCAGGATGCCTTTTTCCTTTCAA
AGCCCACACAAGTTGGCGGCACCCTTCAGTCTCT
Found at i:1411623 original size:102 final size:101
Alignment explanation
Indices: 1411442--1411635 Score: 316
Period size: 102 Copynumber: 1.9 Consensus size: 101
1411432 CCCATTTTTC
* * * * *
1411442 CTTTTAAAGCCCACACGAGTTTGTGGCACCCTTTAGTCCTCAAAGAGCAAGATTCCTTTTTCTTT
1 CTTTTAAAGCCCACACAAGTTGGTAGCACCCTTTAGTCCTCAAAGAGCAAGATGCCTTTTTCCTT
*
1411507 TCAATGCCCACACGAGTTGGTGGCACCCTTCAGTCT
66 TCAAAGCCCACACGAGTTGGTGGCACCCTTCAGTCT
*
1411543 CTTTTCAAAGCCCACACAAGTTGGTAGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTTTCCT
1 CTTTT-AAAGCCCACACAAGTTGGTAGCACCCTTTAGTCCTCAAAGAGCAAGATGCCTTTTTCCT
1411608 TTCAAAGCCCACACGAGTTGGTGGCACC
65 TTCAAAGCCCACACGAGTTGGTGGCACC
1411636 TTTTAGTTCT
Statistics
Matches: 85, Mismatches: 7, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
101 5 0.06
102 80 0.94
ACGTcount: A:0.23, C:0.29, G:0.19, T:0.29
Consensus pattern (101 bp):
CTTTTAAAGCCCACACAAGTTGGTAGCACCCTTTAGTCCTCAAAGAGCAAGATGCCTTTTTCCTT
TCAAAGCCCACACGAGTTGGTGGCACCCTTCAGTCT
Found at i:1411642 original size:62 final size:62
Alignment explanation
Indices: 1411545--1411705 Score: 259
Period size: 62 Copynumber: 2.6 Consensus size: 62
1411535 TTCAGTCTCT
*
1411545 TTTCAAAGCCCACACAAGTTGGTAGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTTTCC
1 TTTCAAAGCCCACACAAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTTTCC
* * * *
1411607 TTTCAAAGCCCACACGAGTTGGTGGCACCTTTTAGTTCTGAAAGAGCAGGATGCCTTTTTCC
1 TTTCAAAGCCCACACAAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTTTCC
* *
1411669 TTTCAAAGCCCACACAAGTTTGCGGCACCCTTTAGTC
1 TTTCAAAGCCCACACAAGTTGGTGGCACCCTTTAGTC
1411706 TCCTTTCAAA
Statistics
Matches: 89, Mismatches: 10, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
62 89 1.00
ACGTcount: A:0.24, C:0.28, G:0.19, T:0.29
Consensus pattern (62 bp):
TTTCAAAGCCCACACAAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTTTCC
Found at i:1411710 original size:102 final size:102
Alignment explanation
Indices: 1411604--1411790 Score: 302
Period size: 102 Copynumber: 1.8 Consensus size: 102
1411594 GATGCCTTTT
* ** * * *
1411604 TCCTTTCAAAGCCCACACGAGTTGGTGGCACCTTTTAGTTCTGAAAGAGCAGGATGCCTTTTTCC
1 TCCTTTCAAAGCCCACACAAGTTGGTGGCACCCATTAGTCCTCAAAAAGCAGGATGCCTTTTTCC
1411669 TTTCAAAGCCCACACAAGTTTGCGGCACCCTTTAGTC
66 TTTCAAAGCCCACACAAGTTTGCGGCACCCTTTAGTC
*
1411706 TCCTTTCAAAGCCCACACAAGTTGGTGGCACCCATTAGTCCTCAAAAAGCAGGATGCTTTTTTCC
1 TCCTTTCAAAGCCCACACAAGTTGGTGGCACCCATTAGTCCTCAAAAAGCAGGATGCCTTTTTCC
*
1411771 TTTCAAAGCCCACACGAGTT
66 TTTCAAAGCCCACACAAGTT
1411791 GGTGACACCT
Statistics
Matches: 77, Mismatches: 8, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
102 77 1.00
ACGTcount: A:0.25, C:0.29, G:0.18, T:0.28
Consensus pattern (102 bp):
TCCTTTCAAAGCCCACACAAGTTGGTGGCACCCATTAGTCCTCAAAAAGCAGGATGCCTTTTTCC
TTTCAAAGCCCACACAAGTTTGCGGCACCCTTTAGTC
Found at i:1411712 original size:40 final size:40
Alignment explanation
Indices: 1411666--1411745 Score: 133
Period size: 40 Copynumber: 2.0 Consensus size: 40
1411656 GATGCCTTTT
* *
1411666 TCCTTTCAAAGCCCACACAAGTTTGCGGCACCCTTTAGTC
1 TCCTTTCAAAGCCCACACAAGTTGGCGGCACCCATTAGTC
*
1411706 TCCTTTCAAAGCCCACACAAGTTGGTGGCACCCATTAGTC
1 TCCTTTCAAAGCCCACACAAGTTGGCGGCACCCATTAGTC
1411746 CTCAAAAAGC
Statistics
Matches: 37, Mismatches: 3, Indels: 0
0.93 0.08 0.00
Matches are distributed among these distances:
40 37 1.00
ACGTcount: A:0.24, C:0.34, G:0.16, T:0.26
Consensus pattern (40 bp):
TCCTTTCAAAGCCCACACAAGTTGGCGGCACCCATTAGTC
Found at i:1411866 original size:62 final size:62
Alignment explanation
Indices: 1411706--1411839 Score: 205
Period size: 62 Copynumber: 2.2 Consensus size: 62
1411696 CCCTTTAGTC
* * ** *
1411706 TCCTTTCAAAGCCCACACAAGTTGGTGGCACCCATTAGTCCTCAAAAAGCAGGATGCTTTTT
1 TCCTTTCAAAGCCCACACGAGTTGGTGACACCTTTTAGTCCTCAAAAAGCAGGATGCCTTTT
*
1411768 TCCTTTCAAAGCCCACACGAGTTGGTGACACCTTTTAGTCCTCAAAAAGCAGGGTGCCTTTT
1 TCCTTTCAAAGCCCACACGAGTTGGTGACACCTTTTAGTCCTCAAAAAGCAGGATGCCTTTT
*
1411830 TCGTTTCAAA
1 TCCTTTCAAA
1411840 CCTACTCGGG
Statistics
Matches: 65, Mismatches: 7, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
62 65 1.00
ACGTcount: A:0.26, C:0.27, G:0.18, T:0.29
Consensus pattern (62 bp):
TCCTTTCAAAGCCCACACGAGTTGGTGACACCTTTTAGTCCTCAAAAAGCAGGATGCCTTTT
Found at i:1411922 original size:31 final size:30
Alignment explanation
Indices: 1411863--1411921 Score: 84
Period size: 31 Copynumber: 2.0 Consensus size: 30
1411853 GTGGCCTCAT
* *
1411863 TTTATCCTCAAAGAGTAGGACTCCTTTTTC
1 TTTATCCTCAAAGAGCACGACTCCTTTTTC
1411893 TTTAGTCCTCAAAGAGCACGAC-CCTTTTT
1 TTTA-TCCTCAAAGAGCACGACTCCTTTTT
1411922 TTTTTTCAAA
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
30 11 0.42
31 15 0.58
ACGTcount: A:0.24, C:0.25, G:0.14, T:0.37
Consensus pattern (30 bp):
TTTATCCTCAAAGAGCACGACTCCTTTTTC
Found at i:1411969 original size:62 final size:62
Alignment explanation
Indices: 1411892--1412085 Score: 230
Period size: 62 Copynumber: 3.1 Consensus size: 62
1411882 ACTCCTTTTT
* * * *
1411892 CTTTAGTCCTCAAAGAGCACGACCCTTTTTTTTTTTCAAAGCCTACACGGGTTTGTGGCACC
1 CTTTAGTCCTCAAAGAGCAAGACCCTTTTTTCTTTTCAAAGCCCACACGAGTTTGTGGCACC
* * * * * *
1411954 TTTTAGTTCTGAAAGAGCATGACCCATTTTTCCTTTT-AAAACCCACACGAGTTTGTGGCACC
1 CTTTAGTCCTCAAAGAGCAAGACCC-TTTTTTCTTTTCAAAGCCCACACGAGTTTGTGGCACC
* * *
1412016 CTTTAGTCCTCAAAGAGCAAGATTCC-TTTTTCTTTTCAATGCCCACACGAGTTGGTGGCACC
1 CTTTAGTCCTCAAAGAGCAAGA-CCCTTTTTTCTTTTCAAAGCCCACACGAGTTTGTGGCACC
*
1412078 CTTCAGTC
1 CTTTAGTC
1412086 TCTTTTCAAA
Statistics
Matches: 110, Mismatches: 19, Indels: 6
0.81 0.14 0.04
Matches are distributed among these distances:
61 9 0.08
62 90 0.82
63 11 0.10
ACGTcount: A:0.23, C:0.27, G:0.17, T:0.34
Consensus pattern (62 bp):
CTTTAGTCCTCAAAGAGCAAGACCCTTTTTTCTTTTCAAAGCCCACACGAGTTTGTGGCACC
Found at i:1412026 original size:544 final size:544
Alignment explanation
Indices: 1410998--1412232 Score: 2299
Period size: 544 Copynumber: 2.3 Consensus size: 544
1410988 GGCACCTTTT
* * *
1410998 TCTTTTCAAAGCCCACACATGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTTTCT
1 TCTTTTCAAAGCCCACACAAGTTGGTAGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTTTCC
1411063 TTTCAAAGCCCACACGAGTTGGTGGCACCTTTTAGTTCTGAAAGAGCAGGATGCCTTTTTCCTTT
66 TTTCAAAGCCCACACGAGTTGGTGGCACCTTTTAGTTCTGAAAGAGCAGGATGCCTTTTTCCTTT
1411128 CAAAGCCCACACAAGTTTGCGGCACCCTTTAGTCTCCTTTCAAAGCCCACACAAGTTGGTGGCAC
131 CAAAGCCCACACAAGTTTGCGGCACCCTTTAGTCTCCTTTCAAAGCCCACACAAGTTGGTGGCAC
*
1411193 CCATTAGTCTTCAAAAAGCAGGATGCTTTTTTCCTTTCAAAGCCCACACGAGTTGGTGACACCTT
196 CCATTAGTCCTCAAAAAGCAGGATGCTTTTTTCCTTTCAAAGCCCACACGAGTTGGTGACACCTT
*
1411258 TTAGTCCTCAAAAAGCAGGGTGCCTTTTTCGTTTCAAACCTACTCGGGTTGGTGGCCTCATTTTG
261 TTAGTCCTCAAAAAGCAGGGTGCCTTTTTCGTTTCAAACCTACTCGGGTTGGTGGCCTCATTTTA
*
1411323 TCCTCAAAGAGTAGGACTCCTTTTTCTTTAGTCTTCAAAGAGCACGACCCTTTTTTTTTTTCAAA
326 TCCTCAAAGAGTAGGACTCCTTTTTCTTTAGTCCTCAAAGAGCACGACCCTTTTTTTTTTTCAAA
*
1411388 GCCTACACGGGTTTGTGGCACCTTTTAGTTCTGAAAGAGCATGACCCATTTTTCCTTTTAAAGCC
391 GCCTACACGGGTTTGTGGCACCTTTTAGTTCTGAAAGAGCATGACCCATTTTTCCTTTTAAAACC
1411453 CACACGAGTTTGTGGCACCCTTTAGTCCTCAAAGAGCAAGATTCCTTTTTCTTTTCAATGCCCAC
456 CACACGAGTTTGTGGCACCCTTTAGTCCTCAAAGAGCAAGATTCCTTTTTCTTTTCAATGCCCAC
1411518 ACGAGTTGGTGGCACCCTTCAGTC
521 ACGAGTTGGTGGCACCCTTCAGTC
1411542 TCTTTTCAAAGCCCACACAAGTTGGTAGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTTTCC
1 TCTTTTCAAAGCCCACACAAGTTGGTAGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTTTCC
1411607 TTTCAAAGCCCACACGAGTTGGTGGCACCTTTTAGTTCTGAAAGAGCAGGATGCCTTTTTCCTTT
66 TTTCAAAGCCCACACGAGTTGGTGGCACCTTTTAGTTCTGAAAGAGCAGGATGCCTTTTTCCTTT
1411672 CAAAGCCCACACAAGTTTGCGGCACCCTTTAGTCTCCTTTCAAAGCCCACACAAGTTGGTGGCAC
131 CAAAGCCCACACAAGTTTGCGGCACCCTTTAGTCTCCTTTCAAAGCCCACACAAGTTGGTGGCAC
1411737 CCATTAGTCCTCAAAAAGCAGGATGCTTTTTTCCTTTCAAAGCCCACACGAGTTGGTGACACCTT
196 CCATTAGTCCTCAAAAAGCAGGATGCTTTTTTCCTTTCAAAGCCCACACGAGTTGGTGACACCTT
1411802 TTAGTCCTCAAAAAGCAGGGTGCCTTTTTCGTTTCAAACCTACTCGGGTTGGTGGCCTCATTTTA
261 TTAGTCCTCAAAAAGCAGGGTGCCTTTTTCGTTTCAAACCTACTCGGGTTGGTGGCCTCATTTTA
1411867 TCCTCAAAGAGTAGGACTCCTTTTTCTTTAGTCCTCAAAGAGCACGACCCTTTTTTTTTTTCAAA
326 TCCTCAAAGAGTAGGACTCCTTTTTCTTTAGTCCTCAAAGAGCACGACCCTTTTTTTTTTTCAAA
1411932 GCCTACACGGGTTTGTGGCACCTTTTAGTTCTGAAAGAGCATGACCCATTTTTCCTTTTAAAACC
391 GCCTACACGGGTTTGTGGCACCTTTTAGTTCTGAAAGAGCATGACCCATTTTTCCTTTTAAAACC
1411997 CACACGAGTTTGTGGCACCCTTTAGTCCTCAAAGAGCAAGATTCCTTTTTCTTTTCAATGCCCAC
456 CACACGAGTTTGTGGCACCCTTTAGTCCTCAAAGAGCAAGATTCCTTTTTCTTTTCAATGCCCAC
1412062 ACGAGTTGGTGGCACCCTTCAGTC
521 ACGAGTTGGTGGCACCCTTCAGTC
1412086 TCTTTTCAAAGCCCACACAAGTTGGTAGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTTTCC
1 TCTTTTCAAAGCCCACACAAGTTGGTAGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTTTCC
* ** * * * * * * *
1412151 TTTCTAAGCCCACACGAGTTCATGGCACCATTTAGTCCTTAAAAAGCAAGATTCCTTTTTCATTT
66 TTTCAAAGCCCACACGAGTTGGTGGCACCTTTTAGTTCTGAAAGAGCAGGATGCCTTTTTCCTTT
* *
1412216 CAAAACCCACACGAGTT
131 CAAAGCCCACACAAGTT
1412233 GGTGGTCCAT
Statistics
Matches: 672, Mismatches: 19, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
544 672 1.00
ACGTcount: A:0.24, C:0.27, G:0.18, T:0.32
Consensus pattern (544 bp):
TCTTTTCAAAGCCCACACAAGTTGGTAGCACCCTTTAGTCCTCAAAGAGCAGGATGCCTTTTTCC
TTTCAAAGCCCACACGAGTTGGTGGCACCTTTTAGTTCTGAAAGAGCAGGATGCCTTTTTCCTTT
CAAAGCCCACACAAGTTTGCGGCACCCTTTAGTCTCCTTTCAAAGCCCACACAAGTTGGTGGCAC
CCATTAGTCCTCAAAAAGCAGGATGCTTTTTTCCTTTCAAAGCCCACACGAGTTGGTGACACCTT
TTAGTCCTCAAAAAGCAGGGTGCCTTTTTCGTTTCAAACCTACTCGGGTTGGTGGCCTCATTTTA
TCCTCAAAGAGTAGGACTCCTTTTTCTTTAGTCCTCAAAGAGCACGACCCTTTTTTTTTTTCAAA
GCCTACACGGGTTTGTGGCACCTTTTAGTTCTGAAAGAGCATGACCCATTTTTCCTTTTAAAACC
CACACGAGTTTGTGGCACCCTTTAGTCCTCAAAGAGCAAGATTCCTTTTTCTTTTCAATGCCCAC
ACGAGTTGGTGGCACCCTTCAGTC
Done.