genome.fa.s2154.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold2154
Parameters: 2 7 7 80 10 50 1000
Length:  98853

Tables:   1   

This is table  1  of  1  ( 54 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6857--6882	13	2.0	13	100	0	52	38	15	15	30	1.88
6839--6902	32	2.0	33	90	3	103	39	18	14	28	1.90
8502--8543	21	2.0	21	85	0	57	42	4	28	23	1.74
12406--12469	32	2.0	33	90	3	103	39	18	12	29	1.88
15853--15921	19	3.6	19	88	0	111	27	11	14	46	1.79
17394--17435	13	3.2	13	75	18	50	40	9	14	35	1.78
19940--19994	27	2.0	27	82	0	65	21	14	36	27	1.93
19947--20183	97	2.4	97	91	1	368	29	13	28	28	1.95
22390--22455	20	3.3	20	78	0	87	48	13	9	28	1.73
23134--23257	48	2.6	48	88	0	167	37	18	25	19	1.94
23371--23600	28	8.0	28	81	5	210	24	17	28	29	1.97
29765--29997	97	2.4	97	87	0	322	30	12	29	27	1.93
32146--32314	20	7.8	20	69	19	90	42	13	13	30	1.82
32118--32314	92	2.1	92	91	1	315	43	13	13	29	1.82
37416--37482	33	2.0	33	88	0	98	34	11	13	40	1.81
37436--37460	13	1.9	13	100	0	50	36	16	16	32	1.90
37523--37547	13	1.9	13	100	0	50	32	16	16	36	1.90
37556--37683	52	2.5	52	94	3	224	33	17	17	30	1.94
42286--42320	15	2.3	15	90	9	54	28	25	0	45	1.54
44551--44674	20	6.8	19	68	28	74	33	13	16	35	1.89
44541--44606	22	3.1	22	75	16	84	30	18	15	36	1.91
44594--44653	13	5.1	13	69	22	60	33	13	16	36	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44595--44674	33	2.4	33	95	0	151	35	12	17	35	1.88
44709--44755	20	2.3	21	78	10	62	34	8	21	36	1.84
48645--49192	167	3.3	166	80	6	530	48	11	10	29	1.73
49249--50144	47	19.0	46	76	9	615	37	15	21	25	1.93
49254--50092	93	8.9	93	76	6	623	38	15	20	25	1.92
49277--49856	236	2.5	236	82	4	638	38	15	20	25	1.92
49232--50213	285	3.5	280	82	4	1091	37	15	21	25	1.92
50058--50185	49	2.6	49	82	3	125	33	17	18	29	1.95
52128--52188	20	3.0	20	82	0	77	31	14	14	39	1.87
52151--52208	20	2.8	20	86	7	71	31	20	12	36	1.89
63778--63851	20	3.7	20	79	0	94	43	10	13	32	1.79
64765--65386	28	21.9	28	83	4	658	22	17	29	30	1.97
73343--73386	21	2.1	21	83	8	54	25	31	4	38	1.76
75197--75222	13	2.0	13	100	0	52	38	15	15	30	1.88
77294--77324	15	2.1	15	93	0	53	12	22	16	48	1.80
79128--79172	21	2.1	21	84	8	56	22	20	4	53	1.63
84530--84594	32	2.0	32	84	3	85	29	16	13	40	1.88
89978--90036	18	3.3	17	86	13	75	86	11	1	0	0.65
89979--90036	25	2.3	25	93	3	98	86	12	1	0	0.65
89980--90022	7	6.6	7	84	10	56	88	11	0	0	0.52
91223--91285	25	2.4	27	84	10	78	36	12	14	36	1.84
91293--91850	29	19.6	29	84	6	574	31	29	15	23	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
91300--91850	57	9.7	57	85	5	615	32	29	15	22	1.95
93323--93367	11	4.1	11	83	8	56	77	0	22	0	0.76
93330--93370	12	3.3	13	83	13	59	73	0	26	0	0.84
93323--93397	24	3.4	22	75	12	73	74	1	21	2	1.01
93336--93374	12	3.2	12	82	13	53	71	0	28	0	0.86
95922--95973	12	4.6	12	82	15	58	0	21	0	78	0.74
95916--95974	23	2.6	22	81	7	64	1	20	0	77	0.85
95899--95973	22	3.4	22	72	18	66	2	20	1	76	0.99
97382--97459	32	2.4	32	84	0	102	17	19	30	32	1.95
97427--97970	28	19.3	29	83	7	530	22	15	29	32	1.95

Tables:   1

The End!