genome.fa.s2157.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold2157
Parameters: 2 7 7 80 10 50 1000
Length:  208913

Tables:   1   

This is table  1  of  1  ( 76 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7--484	30	16.5	30	77	10	379	24	16	28	30	1.96
7--454	57	7.8	56	73	11	311	23	16	29	30	1.96
27--484	87	5.3	87	75	11	352	24	16	27	30	1.97
1025--1114	43	2.1	43	93	0	153	26	24	17	31	1.97
1068--1221	52	2.9	53	80	4	184	25	24	15	35	1.94
2023--2047	13	1.9	13	100	0	50	36	16	16	32	1.90
2003--2069	33	2.0	33	88	0	98	32	11	14	40	1.83
2110--2134	13	1.9	13	100	0	50	32	16	16	36	1.90
2143--2271	52	2.5	52	94	0	222	34	17	17	29	1.94
5317--6433	476	2.3	475	88	1	1603	30	20	14	35	1.92
6433--7361	476	2.0	475	90	1	1457	29	18	15	36	1.92
7395--7424	13	2.3	13	100	0	60	23	10	6	60	1.52
7436--9218	476	3.7	475	88	2	2366	30	20	14	34	1.92
9619--26611	476	35.7	476	81	5	11387	29	19	14	35	1.92
14514--14543	13	2.3	13	100	0	60	23	10	6	60	1.52
14555--15764	475	2.6	476	89	1	1831	29	18	15	36	1.92
15786--15815	13	2.3	13	100	0	60	23	10	6	60	1.52
20865--24387	159	22.3	158	64	12	683	30	19	14	35	1.92
26244--26906	317	2.1	317	85	1	889	29	20	15	34	1.94
26561--31163	476	9.7	476	87	1	6325	29	19	14	35	1.92
31149--31178	15	2.0	15	100	0	60	20	20	13	46	1.83
30817--31533	370	1.9	370	87	1	1044	29	20	14	35	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30336--32004	846	2.0	846	90	0	2660	28	20	14	35	1.92
31187--43293	476	25.5	476	87	1	16398	29	20	14	35	1.92
43680--43705	13	2.0	13	100	0	52	38	15	15	30	1.88
45923--45967	21	2.1	21	84	8	56	53	4	20	22	1.63
47773--47803	15	2.1	15	93	0	53	48	16	22	12	1.80
49818--49896	20	3.7	21	75	15	72	26	13	15	44	1.84
49883--49921	13	3.0	13	96	0	69	30	17	15	35	1.91
50042--50088	21	2.3	21	79	20	55	34	19	4	42	1.70
50044--50086	20	2.2	19	84	16	52	32	18	4	44	1.71
52462--52487	13	2.0	13	100	0	52	38	15	15	30	1.88
53241--60283	476	14.8	474	85	2	8632	29	19	14	35	1.92
65997--66476	158	3.0	158	67	12	422	29	20	15	34	1.93
66138--66621	158	3.1	157	68	14	432	30	21	13	34	1.92
65997--66656	317	2.1	317	94	0	1160	29	20	14	35	1.93
66812--69052	476	4.7	476	85	1	2939	29	20	14	35	1.92
66788--69052	952	2.4	953	88	1	3290	29	20	14	35	1.92
69091--69138	23	2.1	23	96	0	87	25	8	39	27	1.84
70691--70805	42	2.7	42	90	0	176	44	2	44	8	1.48
70700--70785	24	3.8	24	72	17	76	43	2	44	10	1.51
75786--83809	476	16.9	474	84	4	9528	29	19	14	35	1.92
87572--87690	42	2.8	42	90	0	184	8	45	2	43	1.47
87596--87681	24	3.8	24	69	17	76	10	44	2	43	1.51
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
89308--101085	476	24.8	476	86	1	15343	29	20	14	35	1.92
92283--92926	159	4.1	159	66	11	370	29	22	14	33	1.94
100667--101505	420	2.0	420	91	0	1356	30	20	13	35	1.91
101084--124055	476	48.3	476	93	0	37257	29	21	14	35	1.92
101084--124055	950	24.2	952	93	0	37267	29	21	14	35	1.92
107630--111608	159	25.1	158	62	12	530	29	20	14	34	1.93
126668--126712	21	2.1	21	84	8	56	53	4	20	22	1.63
128516--128546	15	2.1	15	93	0	53	48	16	22	12	1.80
130606--130630	13	1.9	13	100	0	50	32	20	16	32	1.94
130751--130797	21	2.3	21	79	20	55	34	19	4	42	1.70
130753--130795	20	2.2	19	84	16	52	32	18	4	44	1.71
133934--137590	476	7.7	475	92	1	5761	29	21	14	35	1.92
133934--137590	951	3.8	953	91	1	5752	29	21	14	35	1.92
137195--137985	395	2.0	395	92	0	1314	30	22	12	33	1.92
136720--138461	871	2.0	870	93	0	2995	30	21	13	34	1.92
137590--139423	476	3.9	474	92	1	2981	30	21	13	34	1.92
139715--139787	20	3.6	20	81	3	101	35	13	19	31	1.91
139715--139809	41	2.3	42	96	1	174	40	12	17	29	1.87
139848--139873	13	2.0	13	100	0	52	38	15	15	30	1.88
143937--143975	15	2.6	15	91	0	60	51	15	20	12	1.76
145983--146060	20	3.6	21	73	15	70	25	12	16	44	1.83
146047--146085	13	3.0	13	96	0	69	30	17	15	35	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
147891--147936	16	2.8	16	93	6	74	28	2	39	30	1.69
148543--148615	20	3.6	20	81	3	101	35	13	19	31	1.91
148543--148637	41	2.3	42	96	1	174	40	12	17	29	1.87
148676--148701	13	2.0	13	100	0	52	38	15	15	30	1.88
149451--208888	476	123.7	476	85	7	63865	29	21	14	34	1.93
175573--175691	42	2.8	42	92	0	193	8	46	2	42	1.47
175606--175681	12	6.9	11	75	15	52	9	48	2	39	1.49
175597--175682	24	3.8	24	72	17	85	10	45	2	41	1.51
175588--175658	18	3.6	18	69	20	52	9	43	2	43	1.52
181249--206168	159	157.1	161	61	18	1188	30	21	14	34	1.92

Tables:   1

The End!