genome.fa.s2158.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold2158
Parameters: 2 7 7 80 10 50 1000
Length:  70958

Tables:   1   

This is table  1  of  1  ( 36 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5243--5292	21	2.4	22	83	9	61	32	20	0	48	1.50
6787--6811	13	1.9	13	100	0	50	36	16	16	32	1.90
6766--6830	32	2.0	32	85	8	87	32	15	13	38	1.87
6800--6852	20	2.7	20	91	2	81	30	13	18	37	1.89
6882--6935	20	2.7	20	88	5	74	33	14	14	37	1.88
6903--7069	72	2.5	66	88	9	234	33	14	15	35	1.89
11395--11419	13	1.9	13	100	0	50	32	16	16	36	1.90
14013--14085	20	3.5	20	78	14	76	38	15	8	38	1.77
15403--16186	43	16.3	49	70	16	434	26	24	15	33	1.95
15407--16129	95	7.5	95	81	3	754	26	24	15	34	1.95
15459--16128	191	3.5	191	86	2	939	26	24	15	33	1.95
15900--16170	146	1.8	147	88	2	409	26	24	16	32	1.96
16270--16300	11	2.8	11	95	0	53	29	41	0	29	1.56
24143--24386	130	1.9	129	84	5	332	33	11	13	41	1.80
29953--30004	19	2.7	20	87	6	79	28	13	15	42	1.85
32061--32103	20	2.1	20	82	4	50	11	25	41	20	1.86
32533--32570	13	2.9	13	96	0	67	31	15	18	34	1.92
38680--38731	19	2.7	20	87	6	79	28	13	15	42	1.85
42996--43022	2	13.5	2	100	0	54	48	0	0	51	1.00
49991--50198	80	2.6	79	82	3	231	29	16	29	24	1.96
50150--50221	28	2.6	28	88	0	99	23	19	34	22	1.96
50070--50432	108	3.4	107	72	14	264	31	15	27	26	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50210--50547	52	6.4	52	67	16	158	32	12	24	30	1.92
50353--50432	27	2.9	28	78	10	85	28	20	28	22	1.98
52904--52929	13	2.0	13	100	0	52	38	15	15	30	1.88
52883--52949	33	2.0	33	88	0	98	43	16	14	25	1.86
53667--55222	55	28.3	55	92	3	2397	21	20	29	28	1.98
53988--54073	27	3.1	27	62	15	68	23	18	30	27	1.98
54200--54282	26	3.1	26	65	19	62	18	19	32	30	1.95
54592--54677	27	3.1	27	62	15	68	23	18	30	27	1.98
54811--54900	26	3.3	26	69	19	76	21	17	33	27	1.96
55090--55175	26	3.2	26	67	20	77	17	18	34	29	1.94
56190--56248	23	2.5	24	78	13	70	0	11	6	81	0.87
56206--56254	15	3.2	15	81	18	57	0	6	8	85	0.73
56231--56255	13	1.9	13	100	0	50	0	4	8	88	0.64
69030--69086	26	2.2	25	82	14	71	24	19	31	24	1.98

Tables:   1

The End!