genome.fa.s2159.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold2159
Parameters: 2 7 7 80 10 50 1000
Length:  33973

Tables:   1   

This is table  1  of  1  ( 27 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
76--200	50	2.5	50	96	2	223	26	16	20	36	1.93
211--235	13	1.9	13	100	0	50	36	16	16	32	1.90
278--371	19	5.6	18	68	28	73	34	17	13	35	1.89
297--353	13	3.9	13	72	24	51	31	17	15	35	1.92
276--371	32	3.0	32	93	1	165	34	16	13	35	1.88
1272--1296	3	8.3	3	100	0	50	32	0	36	32	1.58
5670--5709	19	2.2	19	86	13	57	27	0	20	52	1.46
5646--5698	27	1.9	28	85	11	74	20	0	24	54	1.44
8449--8514	34	2.0	33	88	8	98	37	13	15	33	1.86
12980--13033	20	2.7	20	91	0	81	37	18	14	29	1.91
15219--15259	18	2.3	19	79	12	50	48	2	7	41	1.44
15291--15353	10	5.7	11	73	19	51	65	4	30	0	1.13
18567--18674	21	5.3	21	72	11	75	32	21	6	39	1.79
20466--20532	24	2.9	22	78	12	71	79	1	16	2	0.94
20466--20513	11	4.1	12	84	10	64	81	0	16	2	0.79
27956--28080	53	2.4	52	92	5	200	28	17	18	35	1.94
27956--28100	51	2.8	50	84	14	170	30	17	18	33	1.94
28089--28113	13	1.9	13	100	0	50	36	16	16	32	1.90
28178--28202	13	1.9	13	100	0	50	32	16	16	36	1.90
29388--31424	27	75.0	27	83	2	2224	24	30	14	30	1.95
29388--31684	54	42.1	54	83	4	2236	24	30	14	30	1.95
31403--31725	56	5.7	56	76	10	298	29	29	16	25	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29379--31725	27	85.9	29	79	11	363	24	30	14	30	1.95
31403--31713	117	2.7	117	81	7	329	28	28	16	25	1.97
31692--31857	32	5.2	31	81	8	183	29	38	16	15	1.89
31692--31857	64	2.6	63	86	11	232	29	38	16	15	1.89
31715--31857	63	2.2	64	93	1	252	30	38	16	14	1.88

Tables:   1

The End!