genome.fa.s2162.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold2162
Parameters: 2 7 7 80 10 50 1000
Length:  90937

Tables:   1   

This is table  1  of  1  ( 62 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1228--1282	22	2.5	22	82	8	60	1	20	0	78	0.85
1238--1284	23	2.1	24	88	11	73	0	19	0	80	0.70
1243--1284	10	4.0	10	84	9	57	0	16	0	83	0.65
1245--1284	11	3.5	11	83	6	53	0	15	0	85	0.61
3141--3189	20	2.4	21	86	3	64	40	8	24	26	1.83
8765--8818	20	2.7	20	91	0	81	29	14	18	37	1.91
11028--11070	21	2.1	20	83	12	52	53	6	13	25	1.65
11028--11070	20	2.1	21	83	12	54	53	6	13	25	1.65
13356--13421	34	2.0	33	88	8	98	33	15	13	37	1.86
20591--20615	3	8.3	3	100	0	50	32	36	0	32	1.58
21537--21593	13	3.9	13	72	24	51	35	15	17	31	1.92
21519--21614	32	3.0	32	93	1	165	35	13	16	34	1.88
21519--21612	19	5.6	18	68	28	73	35	13	17	34	1.89
21655--21679	13	1.9	13	100	0	50	32	16	16	36	1.90
21668--21816	52	2.9	51	87	7	219	34	19	16	28	1.94
25890--25938	13	4.2	13	75	24	63	36	18	12	32	1.88
25890--25959	33	2.1	34	89	7	108	34	20	12	32	1.90
30541--30582	22	1.9	22	90	0	66	42	0	28	28	1.56
31176--31202	13	2.1	13	100	0	54	29	14	14	40	1.86
31267--31297	13	2.4	13	94	0	53	35	16	12	35	1.87
31251--31319	33	2.1	33	86	5	95	33	13	17	36	1.88
32380--32431	21	2.4	21	84	9	61	34	9	25	30	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35114--35139	4	6.5	4	100	0	52	76	0	23	0	0.78
36517--36597	26	3.2	25	73	19	80	59	1	2	37	1.19
36646--36674	13	2.1	14	93	6	51	79	0	0	20	0.74
37836--38391	219	2.5	219	92	1	909	39	9	7	43	1.67
38218--38553	170	2.0	166	86	4	469	38	9	6	45	1.61
40827--40909	43	1.9	43	80	4	96	48	1	2	48	1.22
44403--44427	2	12.5	2	100	0	50	0	0	48	52	1.00
45808--45849	2	21.0	2	87	0	57	52	4	0	42	1.22
46415--46444	15	1.9	16	93	6	53	23	6	0	70	1.11
47759--47856	48	2.0	48	100	0	196	30	3	32	33	1.73
47761--47843	24	3.4	25	67	20	77	31	1	34	32	1.66
49614--49769	50	3.1	50	88	0	213	33	18	18	29	1.95
54147--54381	50	4.7	51	86	3	334	32	18	17	31	1.94
55331--55380	22	2.2	24	85	7	68	60	2	2	36	1.20
58678--58727	15	3.4	15	71	15	50	64	0	0	36	0.94
58682--58726	21	2.1	21	88	8	65	64	0	0	35	0.94
59535--59569	4	8.8	4	100	0	70	22	0	0	77	0.78
60474--60512	15	2.6	15	79	0	51	82	2	12	2	0.89
61259--61334	12	6.9	11	75	15	52	39	2	48	9	1.49
61249--61367	42	2.8	42	93	0	202	42	1	46	9	1.46
61324--61373	18	2.8	18	81	6	57	44	2	46	8	1.44
66339--66374	15	2.4	15	90	0	54	22	27	0	50	1.50
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
66377--66432	25	2.2	25	78	12	62	37	0	1	60	1.07
68536--68583	13	3.7	13	75	8	53	27	6	6	60	1.45
68534--68577	14	3.2	14	77	6	54	29	4	6	59	1.44
70645--70715	35	2.0	35	97	0	133	56	11	9	22	1.64
75719--75766	21	2.3	21	92	0	78	39	6	25	29	1.80
79964--80027	16	4.0	16	72	8	58	32	10	9	46	1.71
79939--80020	32	2.6	32	76	0	92	31	10	8	48	1.68
82816--82841	3	8.7	3	100	0	52	30	0	0	69	0.89
84448--84488	21	2.0	21	85	9	57	56	0	0	43	0.99
84464--84504	20	2.0	20	85	0	55	63	0	0	36	0.95
85192--85236	25	1.9	23	86	13	65	15	11	2	71	1.24
85232--85293	18	3.2	18	72	22	54	24	9	4	61	1.47
85983--86018	2	18.0	2	100	0	72	50	0	0	50	1.00
86050--86359	174	1.8	169	86	6	448	39	10	9	40	1.73
86626--86754	64	2.0	64	100	0	258	29	10	12	47	1.75
88162--88187	3	8.7	3	100	0	52	69	0	0	30	0.89
90215--90252	15	2.7	14	84	11	51	44	7	0	47	1.32
90175--90321	71	2.1	71	81	6	165	43	5	2	48	1.40

Tables:   1

The End!