genome.fa.s2163.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold2163
Parameters: 2 7 7 80 10 50 1000
Length:  59531

Tables:   1   

This is table  1  of  1  ( 36 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8791--8919	20	5.9	20	67	24	73	39	14	15	30	1.87
8743--9000	71	3.6	71	85	4	351	39	14	15	30	1.87
21579--21635	20	2.8	21	84	5	73	38	15	15	29	1.89
21535--21687	71	2.2	71	91	2	245	40	14	15	29	1.87
21599--21740	52	2.8	51	85	1	203	40	14	16	28	1.88
21531--21769	123	2.0	122	84	5	313	40	13	16	29	1.87
24952--25049	31	3.2	31	88	0	133	37	15	19	27	1.92
25691--25858	61	2.8	61	91	0	264	38	13	25	23	1.90
26030--26558	95	5.6	95	85	5	669	17	17	32	32	1.93
26030--26558	127	4.2	126	84	5	642	17	17	32	32	1.93
26030--26552	158	3.3	158	86	4	682	17	17	32	32	1.93
26030--26558	32	16.7	31	83	5	573	17	17	32	32	1.93
28116--28227	12	9.2	12	73	12	86	2	0	14	82	0.83
28116--28229	43	2.7	43	81	14	132	2	1	14	80	0.90
28116--28226	44	2.6	42	81	15	124	2	0	14	81	0.84
28118--28225	51	2.1	51	83	13	134	2	0	14	81	0.86
28126--28225	27	4.0	24	75	14	94	3	1	15	81	0.87
28118--28216	7	13.9	7	73	14	62	3	1	15	80	0.88
33235--33941	34	21.0	33	78	13	653	20	31	12	34	1.91
33297--33423	62	2.0	62	98	0	245	22	30	12	34	1.91
33235--33939	96	7.0	94	81	12	578	20	31	12	34	1.91
33355--33941	70	8.5	69	82	10	677	20	32	12	34	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33942--34038	32	3.0	33	93	4	162	27	36	18	17	1.94
34043--34859	52	16.8	51	86	4	803	24	26	17	31	1.97
34392--34753	43	8.0	43	82	9	445	25	26	18	29	1.98
34392--34753	86	4.0	86	88	8	499	25	26	18	29	1.98
34712--35276	171	3.3	171	97	0	1040	24	24	14	37	1.93
34978--35101	67	1.9	65	83	8	164	23	24	12	39	1.90
35901--35925	13	1.9	13	100	0	50	36	16	16	32	1.90
35993--36017	13	1.9	13	100	0	50	32	16	16	36	1.90
36026--36146	52	2.3	52	97	0	224	34	18	18	28	1.94
46834--46872	15	2.6	15	79	0	51	82	2	12	2	0.89
47616--47691	12	6.9	11	75	15	52	39	2	48	9	1.49
47615--47700	24	3.8	24	72	17	85	41	2	45	10	1.51
47606--47724	42	2.8	42	92	0	193	42	2	46	8	1.47
57067--57125	19	3.1	18	76	11	55	33	11	16	37	1.86

Tables:   1

The End!