genome.fa.s2165.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold2165
Parameters: 2 7 7 80 10 50 1000
Length:  46550

Tables:   1   

This is table  1  of  1  ( 35 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1805--1930	52	2.4	52	91	0	216	27	17	18	36	1.93
2018--2112	19	5.7	18	71	28	93	37	17	11	32	1.86
2008--2110	32	3.2	32	97	0	188	36	18	11	33	1.87
3986--4043	20	3.0	20	84	2	73	31	10	12	46	1.74
4082--4106	13	1.9	13	100	0	50	32	16	16	36	1.90
4115--4242	52	2.5	52	94	3	224	33	17	17	30	1.94
17480--17556	20	3.9	19	75	11	75	42	14	12	29	1.83
17451--17658	91	2.3	91	86	3	276	42	12	16	28	1.84
17571--17638	20	3.4	20	78	8	75	41	10	16	32	1.82
19199--19608	141	2.9	141	84	3	545	34	12	10	42	1.76
21826--21924	27	3.7	27	75	16	89	52	4	4	39	1.39
21832--22008	55	3.2	54	78	9	164	50	6	5	37	1.51
21832--22122	28	10.5	27	75	5	172	48	6	8	37	1.59
22663--22732	25	2.9	24	72	18	63	35	2	4	57	1.33
24643--24723	31	2.6	31	75	12	78	46	0	3	49	1.19
24999--25043	23	2.0	23	82	8	56	42	6	2	48	1.41
30749--30819	20	3.5	20	81	12	81	39	11	11	38	1.77
30848--30899	20	2.5	21	81	12	63	30	19	9	40	1.83
30864--30917	20	2.6	21	82	2	65	35	16	7	40	1.77
31400--31565	85	1.9	86	86	4	237	24	21	23	30	1.99
31721--31841	31	3.9	31	76	4	118	16	24	30	28	1.97
31473--31941	180	2.6	180	89	3	682	20	23	26	29	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31970--32079	37	3.1	36	84	5	134	34	15	30	20	1.93
32033--32201	77	2.2	76	86	4	241	40	12	26	20	1.88
32193--32280	36	2.4	36	81	9	99	47	13	23	14	1.80
32220--32320	41	2.6	41	76	17	108	38	15	26	18	1.91
35855--35931	20	3.9	19	76	6	73	33	12	12	40	1.82
35855--35932	40	2.0	39	84	2	102	33	12	14	39	1.84
36840--36894	22	2.5	22	100	0	110	18	10	9	61	1.54
36840--36901	22	2.9	21	90	4	63	20	11	9	58	1.61
38139--38314	97	1.8	96	84	8	243	29	27	11	31	1.91
43888--43965	13	5.8	13	76	18	70	84	8	2	3	0.83
43889--43952	1	64.0	1	77	0	56	87	7	1	3	0.71
45183--45654	28	16.4	28	86	3	548	28	31	17	22	1.97
46131--46207	20	3.9	19	77	6	73	35	12	11	40	1.80

Tables:   1

The End!