genome.fa.s2166.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold2166
Parameters: 2 7 7 80 10 50 1000
Length:  40247

Tables:   1   

This is table  1  of  1  ( 32 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1284--1403	1	120.0	1	78	0	96	86	7	2	3	0.76
1284--1403	33	3.4	35	83	14	158	86	7	2	3	0.76
2842--3309	30	15.9	29	77	9	360	29	29	17	24	1.97
2838--3308	57	8.0	59	76	10	353	29	29	16	24	1.97
3314--3403	43	2.1	43	91	0	144	26	25	17	30	1.98
3357--3494	52	2.6	53	82	3	161	23	25	16	34	1.96
4342--4366	13	1.9	13	100	0	50	36	16	16	32	1.90
4429--4453	13	1.9	13	100	0	50	32	16	16	36	1.90
4442--4590	52	2.9	51	91	4	244	32	19	17	30	1.95
9045--9337	79	3.7	79	81	4	320	28	25	11	33	1.91
9642--9690	23	2.2	22	81	3	53	14	4	16	65	1.42
15563--15633	31	2.3	31	82	0	88	22	28	12	36	1.91
15636--15872	63	3.8	63	76	11	252	26	18	18	35	1.95
15632--15873	62	3.9	62	77	5	236	25	19	18	36	1.94
15632--15873	127	1.9	126	88	7	366	25	19	18	36	1.94
16186--16239	20	2.6	21	91	5	92	38	11	18	31	1.86
29938--29962	13	1.9	13	100	0	50	36	16	16	32	1.90
30010--30073	19	3.7	19	74	23	77	39	17	12	31	1.87
30028--30052	13	1.9	13	100	0	50	32	16	16	36	1.90
30005--30071	32	2.1	33	94	2	118	37	17	11	32	1.87
35715--35950	37	6.3	37	73	9	149	22	25	13	38	1.90
35669--35923	116	2.2	113	81	3	296	22	25	12	38	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35860--35966	37	2.9	37	77	9	103	24	24	14	37	1.92
35744--36024	150	1.9	150	81	4	343	23	25	12	39	1.89
36275--36377	31	3.3	31	73	2	100	27	30	27	15	1.96
36189--36586	180	2.2	180	85	0	526	30	24	23	21	1.99
37087--37125	20	2.0	20	89	0	60	38	10	20	30	1.86
38675--38720	21	2.2	21	84	7	58	76	0	2	21	0.90
38896--38922	14	1.9	14	100	0	54	25	22	7	44	1.79
39295--39346	23	2.3	23	89	0	77	36	17	21	25	1.94
39969--40019	7	7.7	7	81	14	56	54	27	15	1	1.52
40027--40111	23	3.7	23	95	0	143	63	21	7	8	1.46

Tables:   1

The End!