Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold217
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 207949
ACGTcount: A:0.32, C:0.18, G:0.17, T:0.32
File 1 of 2
Found at i:1354 original size:17 final size:17
Alignment explanation
Indices: 1306--1358 Score: 61
Period size: 17 Copynumber: 3.0 Consensus size: 17
1296 CTGCCAGTTT
1306 CATGTATCGATACAATTG
1 CATGTATCGATACAA-TG
** *
1324 TGTAGTATCAATACAATG
1 CAT-GTATCGATACAATG
1342 CATGTATCGATACAATG
1 CATGTATCGATACAATG
1359 TTCGACACAA
Statistics
Matches: 28, Mismatches: 6, Indels: 3
0.76 0.16 0.08
Matches are distributed among these distances:
17 13 0.46
18 4 0.14
19 11 0.39
ACGTcount: A:0.36, C:0.15, G:0.17, T:0.32
Consensus pattern (17 bp):
CATGTATCGATACAATG
Found at i:3826 original size:80 final size:81
Alignment explanation
Indices: 3509--3994 Score: 448
Period size: 78 Copynumber: 6.1 Consensus size: 81
3499 AGTACCTCCG
* * * * *
3509 ATGGTGAAAATTTTGATATTTTT-GAAGTAAAAATGGGGTCAGAGTA-TCCCTAAAAAATGATGG
1 ATGGTGAAAATTTTGATATTTTTGGAAATAAAAACGAGGTTAGAGTATTCCCTCAAAAATGATGG
* *
3572 GGTTGCAATATCC-CA
66 GGTTGGAGTATCCTCA
* *
3587 ATGGTGAAAATTTTGATATTTTTGAAAATATAAAACGAGGTTAGAGTATCCCCTCAAAAATGATG
1 ATGGTGAAAATTTTGATATTTTTGGAAATA-AAAACGAGGTTAGAGTATTCCCTCAAAAATGATG
** * *
3652 GGGTTAAAGTATCTTGA
65 GGGTTGGAGTATCCTCA
* * * *
3669 ATAGTGAAAATTTTGATATTTTTGGAAGTTAAAAACG-GCTTTAGAGTA-TCTCCTCAAAAATAA
1 ATGGTGAAAATTTTGATATTTTTGGAA-ATAAAAACGAG-GTTAGAGTATTC-CCTCAAAAATGA
* *
3732 TGGAGTTGAAGTATCC-CTA
63 TGGGGTTGGAGTATCCTC-A
* * * *
3751 ATGGTGAAAATTTTGATA-TTTAGGAAGTAAAAACGAGGTTGGAGTATTCCCTCGAAAATGATGG
1 ATGGTGAAAATTTTGATATTTTTGGAAATAAAAACGAGGTTAGAGTATTCCCTCAAAAATGATGG
* *
3815 GTTTGGAGTATCCTCG
66 GGTTGGAGTATCCTCA
* * **
3831 ATGGTGAAAA--TTAATA-TTTTGGAAATAAAAAC-AGGGCTAGAGTATTCTTTCAAAAATGATG
1 ATGGTGAAAATTTTGATATTTTTGGAAATAAAAACGA-GGTTAGAGTATTCCCTCAAAAATGATG
*
3892 GGGTTAGAGTAT-CTACA
65 GGGTTGGAGTATCCT-CA
* * * * * * *
3909 ATGGTGAAAA-ATTGATA-CTTTGAAAAT-AAAATGAGGTTGGAGTATCCCCTC-GAAATGAT-G
1 ATGGTGAAAATTTTGATATTTTTGGAAATAAAAACGAGGTTAGAGTATTCCCTCAAAAATGATGG
*
3969 GGTTGGAGTATCCTCG
66 GGTTGGAGTATCCTCA
3985 ATGGTGAAAA
1 ATGGTGAAAA
3995 ATCGATAATT
Statistics
Matches: 336, Mismatches: 56, Indels: 34
0.79 0.13 0.08
Matches are distributed among these distances:
76 22 0.07
77 12 0.04
78 101 0.30
79 18 0.05
80 62 0.18
81 37 0.11
82 82 0.24
83 2 0.01
ACGTcount: A:0.36, C:0.10, G:0.23, T:0.31
Consensus pattern (81 bp):
ATGGTGAAAATTTTGATATTTTTGGAAATAAAAACGAGGTTAGAGTATTCCCTCAAAAATGATGG
GGTTGGAGTATCCTCA
Found at i:5998 original size:22 final size:22
Alignment explanation
Indices: 5973--6016 Score: 54
Period size: 22 Copynumber: 2.0 Consensus size: 22
5963 TTGTTAGGAT
5973 CAAAACTACAT-CAAAAATACCC
1 CAAAACTACATCCAAAAA-ACCC
* *
5995 CAAATCTTCATCCAAAAAACCC
1 CAAAACTACATCCAAAAAACCC
6017 TACTCATTAC
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
22 13 0.68
23 6 0.32
ACGTcount: A:0.50, C:0.34, G:0.00, T:0.16
Consensus pattern (22 bp):
CAAAACTACATCCAAAAAACCC
Found at i:8251 original size:21 final size:21
Alignment explanation
Indices: 8217--8274 Score: 71
Period size: 21 Copynumber: 2.8 Consensus size: 21
8207 ATACAAGTAA
*
8217 AAATATATCAATACATCATGT
1 AAATATATCGATACATCATGT
* * *
8238 AAATGTATTGATACATTATGT
1 AAATATATCGATACATCATGT
*
8259 GAATATATCGATACAT
1 AAATATATCGATACAT
8275 ATTGTTGGCA
Statistics
Matches: 30, Mismatches: 7, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
21 30 1.00
ACGTcount: A:0.43, C:0.10, G:0.10, T:0.36
Consensus pattern (21 bp):
AAATATATCGATACATCATGT
Found at i:10345 original size:19 final size:20
Alignment explanation
Indices: 10302--10354 Score: 81
Period size: 19 Copynumber: 2.7 Consensus size: 20
10292 CACACCCAGA
*
10302 TGTATCGATACATGCTGCCT
1 TGTATCGATACATGCTGCAT
*
10322 TGTATCGATACATG-TTCAT
1 TGTATCGATACATGCTGCAT
10341 TGTATCGATACATG
1 TGTATCGATACATG
10355 AAACTGGCAG
Statistics
Matches: 31, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
19 17 0.55
20 14 0.45
ACGTcount: A:0.25, C:0.19, G:0.19, T:0.38
Consensus pattern (20 bp):
TGTATCGATACATGCTGCAT
Found at i:10466 original size:62 final size:67
Alignment explanation
Indices: 10400--10569 Score: 233
Period size: 72 Copynumber: 2.5 Consensus size: 67
10390 GATAATGGTA
* * *
10400 CAATGTATCGATACATGAAGAAATGTATCGATACATAGC-T-T-G-T-AATGGCTATAATTTCAA
1 CAATGTATCGATACATTATGAATTGTATCGATACATAGCTTGTAGATAAATGGCTATAATTTCAA
10460 AT
66 AT
10462 CAATGTATCGATACATTATGAATTGTATCGATACATAGCTTGTAACGGCTATAAATGGCTATAAT
1 CAATGTATCGATACATTATGAATTGTATCGATACATAGCTTGT-A--G--ATAAATGGCTATAAT
10527 TTCAAAT
61 TTCAAAT
10534 CAATGTATCGATACATTATGAATTGTATCGATACAT
1 CAATGTATCGATACATTATGAATTGTATCGATACAT
10570 GGCTACGGGA
Statistics
Matches: 95, Mismatches: 3, Indels: 10
0.88 0.03 0.09
Matches are distributed among these distances:
62 36 0.38
63 1 0.01
64 1 0.01
68 1 0.01
71 1 0.01
72 55 0.58
ACGTcount: A:0.37, C:0.14, G:0.15, T:0.34
Consensus pattern (67 bp):
CAATGTATCGATACATTATGAATTGTATCGATACATAGCTTGTAGATAAATGGCTATAATTTCAA
AT
Found at i:12524 original size:32 final size:30
Alignment explanation
Indices: 12488--12546 Score: 75
Period size: 32 Copynumber: 1.9 Consensus size: 30
12478 GAAATCAAAT
12488 ACAAAGAGCT-TAGAAAAATAATAACAATATGA
1 ACAAA-AGCTCTAGAAAAAT-ATAA-AATATGA
*
12520 ACAAAAGCTCTTGAAAAATATAAAATA
1 ACAAAAGCTCTAGAAAAATATAAAATA
12547 CTTTGATCTA
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
30 4 0.16
31 8 0.32
32 13 0.52
ACGTcount: A:0.59, C:0.10, G:0.10, T:0.20
Consensus pattern (30 bp):
ACAAAAGCTCTAGAAAAATATAAAATATGA
Found at i:12835 original size:13 final size:13
Alignment explanation
Indices: 12817--12842 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
12807 CAATTTTTTG
12817 TGTATCGATACAT
1 TGTATCGATACAT
12830 TGTATCGATACAT
1 TGTATCGATACAT
12843 ACTTGGTGTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:12857 original size:32 final size:33
Alignment explanation
Indices: 12797--12860 Score: 94
Period size: 32 Copynumber: 2.0 Consensus size: 33
12787 TACAAGCCAA
** *
12797 TGTATCGATACAATTTTTTGTGTATCGATACAT
1 TGTATCGATACAATACTTGGTGTATCGATACAT
12830 TGTATCGATAC-ATACTTGGTGTATCGATACA
1 TGTATCGATACAATACTTGGTGTATCGATACA
12861 AGTTTGGCTA
Statistics
Matches: 28, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
32 17 0.61
33 11 0.39
ACGTcount: A:0.28, C:0.14, G:0.17, T:0.41
Consensus pattern (33 bp):
TGTATCGATACAATACTTGGTGTATCGATACAT
Found at i:15427 original size:13 final size:13
Alignment explanation
Indices: 15409--15446 Score: 67
Period size: 13 Copynumber: 2.9 Consensus size: 13
15399 ATAATCCCCC
15409 TGTATCGATACAG
1 TGTATCGATACAG
*
15422 TGTATCGATACAT
1 TGTATCGATACAG
15435 TGTATCGATACA
1 TGTATCGATACA
15447 AAGAAAAATG
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
13 24 1.00
ACGTcount: A:0.32, C:0.16, G:0.18, T:0.34
Consensus pattern (13 bp):
TGTATCGATACAG
Found at i:21325 original size:32 final size:30
Alignment explanation
Indices: 21289--21347 Score: 75
Period size: 32 Copynumber: 1.9 Consensus size: 30
21279 AAAATCAAAT
21289 ACAAAGAGCT-TAGAAAAATAATAACAATATGA
1 ACAAA-AGCTCTAGAAAAAT-ATAA-AATATGA
*
21321 ACAAAAGCTCTTGAAAAATATAAAATA
1 ACAAAAGCTCTAGAAAAATATAAAATA
21348 CTTTGATCTA
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
30 4 0.16
31 8 0.32
32 13 0.52
ACGTcount: A:0.59, C:0.10, G:0.10, T:0.20
Consensus pattern (30 bp):
ACAAAAGCTCTAGAAAAATATAAAATATGA
Found at i:21636 original size:13 final size:13
Alignment explanation
Indices: 21618--21643 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
21608 CAATTTTTTG
21618 TGTATCGATACAT
1 TGTATCGATACAT
21631 TGTATCGATACAT
1 TGTATCGATACAT
21644 ACTTGGTGTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:21658 original size:32 final size:33
Alignment explanation
Indices: 21598--21661 Score: 94
Period size: 32 Copynumber: 2.0 Consensus size: 33
21588 TACAAGCCAA
** *
21598 TGTATCGATACAATTTTTTGTGTATCGATACAT
1 TGTATCGATACAATACTTGGTGTATCGATACAT
21631 TGTATCGATAC-ATACTTGGTGTATCGATACA
1 TGTATCGATACAATACTTGGTGTATCGATACA
21662 AGTTTGGCTA
Statistics
Matches: 28, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
32 17 0.61
33 11 0.39
ACGTcount: A:0.28, C:0.14, G:0.17, T:0.41
Consensus pattern (33 bp):
TGTATCGATACAATACTTGGTGTATCGATACAT
Found at i:22636 original size:24 final size:24
Alignment explanation
Indices: 22606--22654 Score: 73
Period size: 24 Copynumber: 2.0 Consensus size: 24
22596 GGTTCAACTG
22606 AAAAAA-GAGAAAAAAATAGAGAGA
1 AAAAAAGGAGAAAAAAA-AGAGAGA
*
22630 AAAAAAGGAGAAAGAAAAGAGAGA
1 AAAAAAGGAGAAAAAAAAGAGAGA
22654 A
1 A
22655 GAAATAGAAA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
24 14 0.61
25 9 0.39
ACGTcount: A:0.73, C:0.00, G:0.24, T:0.02
Consensus pattern (24 bp):
AAAAAAGGAGAAAAAAAAGAGAGA
Found at i:22658 original size:12 final size:12
Alignment explanation
Indices: 22606--22654 Score: 66
Period size: 12 Copynumber: 4.1 Consensus size: 12
22596 GGTTCAACTG
22606 AAAAAAGAGA-A
1 AAAAAAGAGAGA
22617 AAAAATAGAGAGA
1 AAAAA-AGAGAGA
22630 AAAAAAG-GAGA
1 AAAAAAGAGAGA
22641 AAGAAAAGAGAGA
1 AA-AAAAGAGAGA
22654 A
1 A
22655 GAAATAGAAA
Statistics
Matches: 34, Mismatches: 0, Indels: 6
0.85 0.00 0.15
Matches are distributed among these distances:
11 11 0.32
12 12 0.35
13 11 0.32
ACGTcount: A:0.73, C:0.00, G:0.24, T:0.02
Consensus pattern (12 bp):
AAAAAAGAGAGA
Found at i:24559 original size:97 final size:97
Alignment explanation
Indices: 24341--24550 Score: 366
Period size: 97 Copynumber: 2.2 Consensus size: 97
24331 TTTATTTATC
*
24341 GGGGATACTCCAACCCTGCTTTTAAACACATCAAAGTTTAAATCTTATTCTCACTTAAATTGTCA
1 GGGGATACTCCAACCCTGCTTTTAAACACATCAAAGTTTAAATATTATTCTCACTTAAATTGTCA
*
24406 CCATCGGGCACACTCTAACCCCATTCCTCCGA
66 CCATCGGGCACACTCCAACCCCATTCCTCCGA
*
24438 GGGGATACTCCAACCCTGCTTTTAAACGCATCAAAGTTTAAATATTATTCTCACTTAAATTGTCA
1 GGGGATACTCCAACCCTGCTTTTAAACACATCAAAGTTTAAATATTATTCTCACTTAAATTGTCA
* * *
24503 TCATCGGGGACACTCCAACCCTATTCCTCCGA
66 CCATCGGGCACACTCCAACCCCATTCCTCCGA
24535 GGGGATACTCCAACCC
1 GGGGATACTCCAACCC
24551 CATTTTTAAT
Statistics
Matches: 107, Mismatches: 6, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
97 107 1.00
ACGTcount: A:0.29, C:0.30, G:0.13, T:0.28
Consensus pattern (97 bp):
GGGGATACTCCAACCCTGCTTTTAAACACATCAAAGTTTAAATATTATTCTCACTTAAATTGTCA
CCATCGGGCACACTCCAACCCCATTCCTCCGA
Found at i:32533 original size:87 final size:87
Alignment explanation
Indices: 32387--32558 Score: 290
Period size: 87 Copynumber: 2.0 Consensus size: 87
32377 GATGAAGGTG
* * *
32387 CCAATATGCTGATTCAAGGCCAGCGACATTGGTCTTAGAGGCAAAGTGCAAATATGCTGATTCAA
1 CCAATATGCTGATTCAAGGCCAACGACATTGGTCTTAAAGACAAAGTGCAAATATGCTGATTCAA
32452 GGCCAGCGATATTAGGCTTATA
66 GGCCAGCGATATTAGGCTTATA
* *
32474 CCAATATGCTGATTCAAGGCCAACGACATTGGTCTTAAAGACAAGGTGCCAATATGCTGATTCAA
1 CCAATATGCTGATTCAAGGCCAACGACATTGGTCTTAAAGACAAAGTGCAAATATGCTGATTCAA
*
32539 GGCCAGCGATATTGGGCTTA
66 GGCCAGCGATATTAGGCTTA
32559 AAGATAAAAG
Statistics
Matches: 79, Mismatches: 6, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
87 79 1.00
ACGTcount: A:0.31, C:0.20, G:0.24, T:0.25
Consensus pattern (87 bp):
CCAATATGCTGATTCAAGGCCAACGACATTGGTCTTAAAGACAAAGTGCAAATATGCTGATTCAA
GGCCAGCGATATTAGGCTTATA
Found at i:32582 original size:136 final size:135
Alignment explanation
Indices: 32338--32698 Score: 490
Period size: 136 Copynumber: 2.7 Consensus size: 135
32328 GTTAAAGATG
* ** * *
32338 CCAATATGCTGATTCAAGGCCAACGATATCAGACTTAAAGATGAAGGTGCCAATATGCTGATTCA
1 CCAATATGCTGATTCAAGGCCAACGACATTGGTCTTAAAGA-CAAGGTGCCAATATGCTGATTCA
* * * * *
32403 AGGCCAGCGACATTGGTCTTAGAGGCAAAGTGCAAATATGCTGATTCAAGGCCAGCGATATTAGG
65 AGGCCAGCGATATTGGACTTAAAGGAAAAGTGCAAATATGCTGATTCAAGGCCAACGATATT-GG
*
32468 -CTTATA
129 ACATATA
32474 CCAATATGCTGATTCAAGGCCAACGACATTGGTCTTAAAGACAAGGTGCCAATATGCTGATTCAA
1 CCAATATGCTGATTCAAGGCCAACGACATTGGTCTTAAAGACAAGGTGCCAATATGCTGATTCAA
* * *
32539 GGCCAGCGATATTGGGCTTAAAGATAAAAGTGCCAATATGCTGATTCAAGGCCAACGATATTGGA
66 GGCCAGCGATATTGGACTTAAAG-GAAAAGTGCAAATATGCTGATTCAAGGCCAACGATATTGGA
*
32604 CATATG
130 CATATA
* * * * *
32610 CCAATGTGATGGTTCAAGGCCAGCGACATTGGTCTTAAAGACATGGTGCCAATATGCTGATTCAA
1 CCAATATGCTGATTCAAGGCCAACGACATTGGTCTTAAAGACAAGGTGCCAATATGCTGATTCAA
* *
32675 GGCCAGCAATATTAGACTTAAAGG
66 GGCCAGCGATATTGGACTTAAAGG
32699 TGCCATAGAG
Statistics
Matches: 200, Mismatches: 23, Indels: 5
0.88 0.10 0.02
Matches are distributed among these distances:
135 45 0.22
136 155 0.77
ACGTcount: A:0.33, C:0.19, G:0.24, T:0.24
Consensus pattern (135 bp):
CCAATATGCTGATTCAAGGCCAACGACATTGGTCTTAAAGACAAGGTGCCAATATGCTGATTCAA
GGCCAGCGATATTGGACTTAAAGGAAAAGTGCAAATATGCTGATTCAAGGCCAACGATATTGGAC
ATATA
Found at i:32600 original size:49 final size:48
Alignment explanation
Indices: 32474--32602 Score: 204
Period size: 48 Copynumber: 2.7 Consensus size: 48
32464 TAGGCTTATA
* * * *
32474 CCAATATGCTGATTCAAGGCCAACGACATTGGTCTTAAAGACAAGGTG
1 CCAATATGCTGATTCAAGGCCAACGATATTGGGCTTAAAGAAAAAGTG
*
32522 CCAATATGCTGATTCAAGGCCAGCGATATTGGGCTTAAAGATAAAAGTG
1 CCAATATGCTGATTCAAGGCCAACGATATTGGGCTTAAAGA-AAAAGTG
32571 CCAATATGCTGATTCAAGGCCAACGATATTGG
1 CCAATATGCTGATTCAAGGCCAACGATATTGG
32603 ACATATGCCA
Statistics
Matches: 74, Mismatches: 6, Indels: 1
0.91 0.07 0.01
Matches are distributed among these distances:
48 38 0.51
49 36 0.49
ACGTcount: A:0.33, C:0.19, G:0.23, T:0.24
Consensus pattern (48 bp):
CCAATATGCTGATTCAAGGCCAACGATATTGGGCTTAAAGAAAAAGTG
Found at i:32737 original size:34 final size:32
Alignment explanation
Indices: 32694--33221 Score: 356
Period size: 34 Copynumber: 16.3 Consensus size: 32
32684 TATTAGACTT
** *
32694 AAAGGTGCCATAGAGTTGTGGACTTACAAGAA
1 AAAGGTGCCACGGAGTTGTGGACTTAAAAGAA
** * *
32726 AAAGGGATGCCATAGAGGTGTGGGCTTAAAACGGAA
1 AAA-GG-TGCCACGGAGTTGTGGACTTAAAA--GAA
* * * **
32762 AAGGGTGTCATGGAGTCATGGACTTAAAA-AGA
1 AAAGGTGCCACGGAGTTGTGGACTTAAAAGA-A
* *
32794 AAATGTGCCACGGACTTGTGGACTTAAAAGGAA
1 AAAGGTGCCACGGAGTTGTGGACTTAAAA-GAA
* * *
32827 CAAGGTGCCACAGAGTTGTGGACTTTGAAGAGAA
1 AAAGGTGCCACGGAGTTGTGGAC-TT-AAAAGAA
32861 AAAGGTGCCACGGAGTTGTGGACTTAAAAGGAA
1 AAAGGTGCCACGGAGTTGTGGACTTAAAA-GAA
* *
32894 AAAGATGCCACGGAGTTGTGGGCTTTAAAAAGAA
1 AAAGGTGCCACGGAGTTGTGGAC-TT-AAAAGAA
* * *
32928 AAAGGTTCCATGGAGTTATGGACTT-----AA
1 AAAGGTGCCACGGAGTTGTGGACTTAAAAGAA
* * *
32955 AAAGGTGCCACAGAGTTGTGAACTTTGAAGAGAA
1 AAAGGTGCCACGGAGTTGTGGAC-TT-AAAAGAA
*
32989 AAAGGTGCCACAGAGTTGTGGACTTAAAAGGAA
1 AAAGGTGCCACGGAGTTGTGGACTTAAAA-GAA
* *
33022 AAAGATGCCACGGAGTTTTGGACTT-----AA
1 AAAGGTGCCACGGAGTTGTGGACTTAAAAGAA
* *
33049 AAAGGTCCCACAGAGTTG-GCGACTTAAAAGGAAA
1 AAAGGTGCCACGGAGTTGTG-GACTTAAAA-G-AA
* * *
33083 AAAAGTGCCACGGAGTTGTGGGCTTTAAAG--
1 AAAGGTGCCACGGAGTTGTGGACTTAAAAGAA
*
33113 ---GGTGCCACAGAGTTGTGGACTTAAAAGGAA
1 AAAGGTGCCACGGAGTTGTGGACTTAAAA-GAA
*
33143 AAAGAGTGCCACAGAGTTGTAGG-CTTTAAAAAGAA
1 AAAG-GTGCCACGGAGTTGT-GGAC-TT-AAAAGAA
* **
33178 AAAAGTGCCACATAGTTGTGGACTTTGAAAAG-A
1 AAAGGTGCCACGGAGTTGTGGAC-TT-AAAAGAA
*
33211 AAACGTGCCAC
1 AAAGGTGCCAC
33222 AAGGTCGTGG
Statistics
Matches: 397, Mismatches: 59, Indels: 79
0.74 0.11 0.15
Matches are distributed among these distances:
26 1 0.00
27 63 0.16
28 3 0.01
31 1 0.00
32 32 0.08
33 92 0.23
34 176 0.44
35 20 0.05
36 9 0.02
ACGTcount: A:0.37, C:0.13, G:0.29, T:0.21
Consensus pattern (32 bp):
AAAGGTGCCACGGAGTTGTGGACTTAAAAGAA
Found at i:32971 original size:61 final size:61
Alignment explanation
Indices: 32828--33017 Score: 236
Period size: 61 Copynumber: 3.0 Consensus size: 61
32818 TAAAAGGAAC
32828 AAGGTGCCACAGAGTTGTGGACTTTGAAGAGAAAAAGGTGCCACGGAGTTGTGGACTTAAAAGGA
1 AAGGTGCCACAGAGTTGTGGACTTTGAAGAGAAAAAGGTGCCACGGAGTTGTGGACTT------A
32893 AA
60 AA
* * * * * * * *
32895 AAGATGCCACGGAGTTGTGGGCTTTAAAAAGAAAAAGGTTCCATGGAGTTATGGACTTAAA
1 AAGGTGCCACAGAGTTGTGGACTTTGAAGAGAAAAAGGTGCCACGGAGTTGTGGACTTAAA
* *
32956 AAGGTGCCACAGAGTTGTGAACTTTGAAGAGAAAAAGGTGCCACAGAGTTGTGGACTTAAA
1 AAGGTGCCACAGAGTTGTGGACTTTGAAGAGAAAAAGGTGCCACGGAGTTGTGGACTTAAA
33017 A
1 A
33018 GGAAAAAGAT
Statistics
Matches: 105, Mismatches: 18, Indels: 6
0.81 0.14 0.05
Matches are distributed among these distances:
61 55 0.52
67 50 0.48
ACGTcount: A:0.36, C:0.12, G:0.30, T:0.22
Consensus pattern (61 bp):
AAGGTGCCACAGAGTTGTGGACTTTGAAGAGAAAAAGGTGCCACGGAGTTGTGGACTTAAA
Found at i:33085 original size:128 final size:126
Alignment explanation
Indices: 32694--33160 Score: 413
Period size: 128 Copynumber: 3.7 Consensus size: 126
32684 TATTAGACTT
* ** * * * *
32694 AAAGGTGCCATAGAGTTGTGGACTTACAAGA-AAAAGGGATGCCATAGAGGTGTGGGCTTAAAAC
1 AAAGGTGCCACAGAGTTGTGGACTTTGAAGAGAAAAAGG-TGCCACAGAGTTGTGGACTTAAAA-
* * * * * * *
32758 GGAAAAGGGTGTCATGGAGTCATGGACTTAAAAAGAAAATGTGCCACGGACTTGTGGACTTAAAA
64 GGAAAAAGATGCCACGGAGTTATGGACTTAAAAAG-----GTCCCACGGAGTTG-GGACTTAAAA
32823 GGAA
123 GGAA
* *
32827 CAAGGTGCCACAGAGTTGTGGACTTTGAAGAGAAAAAGGTGCCACGGAGTTGTGGACTTAAAAGG
1 AAAGGTGCCACAGAGTTGTGGACTTTGAAGAGAAAAAGGTGCCACAGAGTTGTGGACTTAAAAGG
* * * * *
32892 AAAAAGATGCCACGGAGTTGTGGGCTTTAAAAAGAAAAAGGTTCCATGGAGTTATGGACTT----
66 AAAAAGATGCCACGGAGTTATGGAC-TT------AAAAAGGTCCCACGGAGTT-GGGACTTAAAA
32953 --AA
123 GGAA
*
32955 AAAGGTGCCACAGAGTTGTGAACTTTGAAGAGAAAAAGGTGCCACAGAGTTGTGGACTTAAAAGG
1 AAAGGTGCCACAGAGTTGTGGACTTTGAAGAGAAAAAGGTGCCACAGAGTTGTGGACTTAAAAGG
* *
33020 AAAAAGATGCCACGGAGTTTTGGACTTAAAAAGGTCCCACAGAGTTGGCGACTTAAAAGGAAA
66 AAAAAGATGCCACGGAGTTATGGACTTAAAAAGGTCCCACGGAGTTGG-GACTTAAAAGG-AA
* * *
33083 AAAAGTGCCACGGAGTTGTGGGCTTT-AA-AG-----GGTGCCACAGAGTTGTGGACTTAAAAGG
1 AAAGGTGCCACAGAGTTGTGGACTTTGAAGAGAAAAAGGTGCCACAGAGTTGTGGACTTAAAAGG
*
33141 AAAAAGAGTGCCACAGAGTT
66 AAAAAGA-TGCCACGGAGTT
33161 GTAGGCTTTA
Statistics
Matches: 282, Mismatches: 34, Indels: 47
0.78 0.09 0.13
Matches are distributed among these distances:
120 1 0.00
121 56 0.20
122 11 0.04
126 2 0.01
127 4 0.01
128 111 0.39
132 20 0.07
133 49 0.17
134 22 0.08
139 6 0.02
ACGTcount: A:0.36, C:0.13, G:0.30, T:0.21
Consensus pattern (126 bp):
AAAGGTGCCACAGAGTTGTGGACTTTGAAGAGAAAAAGGTGCCACAGAGTTGTGGACTTAAAAGG
AAAAAGATGCCACGGAGTTATGGACTTAAAAAGGTCCCACGGAGTTGGGACTTAAAAGGAA
Found at i:33113 original size:94 final size:94
Alignment explanation
Indices: 32780--33113 Score: 327
Period size: 94 Copynumber: 3.5 Consensus size: 94
32770 CATGGAGTCA
* * * * * * * *
32780 TGGACTTAAAA--AGAAAATGTGCCACGGACTTGTGGACTTAAAAGGAACAAGGTGCCACAGAGT
1 TGGACTTAAAAGGAAAAAAAGTGCCACGGAGTTGTGGGCTTTAAAGGAAAAAGATGCCACGGAGT
* *
32843 TGTGGACTTTGAAGAGAAAAAGGTGCCACGGAGTTG
66 TATGGAC-TT------AAAAAGGTGCCACAGAGTTG
* * * * *
32879 TGGACTTAAAAGGAAAAAGA-TGCCACGGAGTTGTGGGCTTTAAAAAGAAAAAGGTTCCATGGAG
1 TGGACTTAAAAGGAAAAAAAGTGCCACGGAGTTGTGGGCTTT-AAAGGAAAAAGATGCCACGGAG
32943 TTATGGACTTAAAAAGGTGCCACAGAGTTG
65 TTATGGACTTAAAAAGGTGCCACAGAGTTG
* ** * * * *
32973 TGAACTTTGAA-GAGAAAAAGGTGCCACAGAGTTGTGGACTTAAAAGGAAAAAGATGCCACGGAG
1 TGGACTTAAAAGGA-AAAAAAGTGCCACGGAGTTGTGGGCTTTAAAGGAAAAAGATGCCACGGAG
* *
33037 TTTTGGACTTAAAAAGGTCCCACAGAGTTG
65 TTATGGACTTAAAAAGGTGCCACAGAGTTG
33067 -GCGACTTAAAAGGAAAAAAAGTGCCACGGAGTTGTGGGCTTTAAAGG
1 TG-GACTTAAAAGGAAAAAAAGTGCCACGGAGTTGTGGGCTTTAAAGG
33114 GTGCCACAGA
Statistics
Matches: 194, Mismatches: 34, Indels: 19
0.79 0.14 0.08
Matches are distributed among these distances:
93 3 0.02
94 112 0.58
95 20 0.10
99 11 0.06
100 20 0.10
101 28 0.14
ACGTcount: A:0.37, C:0.13, G:0.29, T:0.21
Consensus pattern (94 bp):
TGGACTTAAAAGGAAAAAAAGTGCCACGGAGTTGTGGGCTTTAAAGGAAAAAGATGCCACGGAGT
TATGGACTTAAAAAGGTGCCACAGAGTTG
Found at i:33121 original size:61 final size:61
Alignment explanation
Indices: 32988--33173 Score: 277
Period size: 61 Copynumber: 3.1 Consensus size: 61
32978 TTTGAAGAGA
* * *
32988 AAAAGGTGCCACAGAGTTGTGGACTTAAAAGGAAAAAGA-TGCCACGGAGTTTTGGACTTA
1 AAAAGGTGCCACAGAGTTGTGGACTTAAAAGGAAAAAGAGTGCCACGGAGTTGTGGGCTTT
* *
33048 AAAAGGTCCCACAGAGTTG-GCGACTTAAAAGGAAAAAAAGTGCCACGGAGTTGTGGGCTTT
1 AAAAGGTGCCACAGAGTTGTG-GACTTAAAAGGAAAAAGAGTGCCACGGAGTTGTGGGCTTT
* * *
33109 AAAGGGTGCCACAGAGTTGTGGACTTAAAAGGAAAAAGAGTGCCACAGAGTTGTAGGCTTT
1 AAAAGGTGCCACAGAGTTGTGGACTTAAAAGGAAAAAGAGTGCCACGGAGTTGTGGGCTTT
33170 AAAA
1 AAAA
33174 AGAAAAAAGT
Statistics
Matches: 112, Mismatches: 11, Indels: 5
0.88 0.09 0.04
Matches are distributed among these distances:
59 1 0.01
60 35 0.31
61 75 0.67
62 1 0.01
ACGTcount: A:0.37, C:0.14, G:0.29, T:0.20
Consensus pattern (61 bp):
AAAAGGTGCCACAGAGTTGTGGACTTAAAAGGAAAAAGAGTGCCACGGAGTTGTGGGCTTT
Found at i:33139 original size:27 final size:27
Alignment explanation
Indices: 33087--33140 Score: 81
Period size: 27 Copynumber: 2.0 Consensus size: 27
33077 AGGAAAAAAA
* * *
33087 GTGCCACGGAGTTGTGGGCTTTAAAGG
1 GTGCCACAGAGTTGTGGACTTAAAAGG
33114 GTGCCACAGAGTTGTGGACTTAAAAGG
1 GTGCCACAGAGTTGTGGACTTAAAAGG
33141 AAAAAGAGTG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
27 24 1.00
ACGTcount: A:0.24, C:0.15, G:0.37, T:0.24
Consensus pattern (27 bp):
GTGCCACAGAGTTGTGGACTTAAAAGG
Found at i:33326 original size:127 final size:126
Alignment explanation
Indices: 33141--33559 Score: 399
Period size: 127 Copynumber: 3.3 Consensus size: 126
33131 ACTTAAAAGG
* * *
33141 AAAAAGAGTGCCACAGAGTTGTAGG-CTTT-AAAAAGAAAAAAGTGCCACAT-AGTTGTGGACTT
1 AAAAAGA-TGCCACTGAGTCGT-GGACTTTGAAGAA-AAAAAA-TGCCA-ATGAGTTGTGGACTT
* * * *
33203 TGAAAAGAAAACGTGCCAC-AAGGTCGTGGACTTTGGGAAGAAATGCCACTGAGTCATGGACTTT
61 TGAAAAGAAAACATGCCACTGA-GTCGTGGACTTTGGAAAGAAATGCCACTGAGTCGTGGACTTT
33267 GA
125 GA
*
33269 AAAAAGATTGCCACTGTGTCGTGGACTTTGAAGAAAAAAAATGCCAATGAGTTGTGGACTTTGAA
1 AAAAAGA-TGCCACTGAGTCGTGGACTTTGAAGAAAAAAAATGCCAATGAGTTGTGGACTTTGAA
* * * *
33334 GAA-AAAAAATGCCACTGAGTCGTGGAC-TTGGAAAAAAATGATGCCACTGAGTCGTGGTCTTAG
65 -AAGAAAACATGCCACTGAGTCGTGGACTTTGG-AAAGAA--ATGCCACTGAGTCGTGGACTTTG
33397 A
126 A
* * * * * * *
33398 AAAGAGATGCCACTGAGTCGTTGACTTTGAAGAAAAAAGATGCCACTGAGTCGTAGAC-TTG-GA
1 AAAAAGATGCCACTGAGTCGTGGACTTTGAAGAAAAAAAATGCCAATGAGTTGTGGACTTTGAAA
* * * * * *
33461 AGAAAAGCATGCCACTGAGTCATGGTCTTAGAAAAGAGATGCCACT-AGGTCGTAGACTTTGA
66 AGAAAA-CATGCCACTGAGTCGTGGACTTTGGAAAGAAATGCCACTGA-GTCGTGGACTTTGA
*
33523 GAAAAGAGATGCCACTGAGTTGTGGACTTTG-AGAAAA
1 -AAAA-AGATGCCACTGAGTCGTGGACTTTGAAGAAAA
33560 GAGATTTAAA
Statistics
Matches: 243, Mismatches: 34, Indels: 30
0.79 0.11 0.10
Matches are distributed among these distances:
124 1 0.00
125 21 0.09
126 19 0.08
127 93 0.38
128 78 0.32
129 31 0.13
ACGTcount: A:0.36, C:0.15, G:0.26, T:0.23
Consensus pattern (126 bp):
AAAAAGATGCCACTGAGTCGTGGACTTTGAAGAAAAAAAATGCCAATGAGTTGTGGACTTTGAAA
AGAAAACATGCCACTGAGTCGTGGACTTTGGAAAGAAATGCCACTGAGTCGTGGACTTTGA
Found at i:33408 original size:62 final size:63
Alignment explanation
Indices: 33173--33564 Score: 331
Period size: 62 Copynumber: 6.2 Consensus size: 63
33163 AGGCTTTAAA
* * * *
33173 AAGAAAAAAG-TGCCACAT-AGTTGTGGACTTTGAAAAGAAAACGTGCCAC-AAGGTCGTGGACT
1 AAGAAAAAAGATGCCAC-TGAGTCGTGGACTTAGAAAA-AAGA--TGCCACTGA-GTCGTGGACT
33235 TTG
61 TTG
* * * * *
33238 --GGAAGAA-ATGCCACTGAGTCATGGACTTTGAAAAAAGATTGCCACTGTGTCGTGGACTTTG
1 AAGAAAAAAGATGCCACTGAGTCGTGGACTTAGAAAAAAGA-TGCCACTGAGTCGTGGACTTTG
* * * * *
33299 AAGAAAAAAAATGCCAATGAGTTGTGGACTTTGAAGAAAAAAAATGCCACTGAGTCGTGGACTTG
1 AAGAAAAAAGATGCCACTGAGTCGTGGAC-TT--AGAAAAAAGATGCCACTGAGTCGTGGACTTT
33364 G
63 G
* * * *
33365 AA-AAAAATGATGCCACTGAGTCGTGGTCTTAGAAAAGAGATGCCACTGAGTCGTTGACTTTG
1 AAGAAAAAAGATGCCACTGAGTCGTGGACTTAGAAAAAAGATGCCACTGAGTCGTGGACTTTG
* * * *
33427 AAGAAAAAAGATGCCACTGAGTCGTAGACTTGGAAGAAAAGCATGCCACTGAGTCATGGTC-TT-
1 AAGAAAAAAGATGCCACTGAGTCGTGGACTTAGAA-AAAAG-ATGCCACTGAGTCGTGGACTTTG
* * * *
33490 -AGAAAAGAGATGCCACT-AGGTCGTAGACTTTGAGAAAAGAGATGCCACTGAGTTGTGGACTTT
1 AAGAAAAAAGATGCCACTGA-GTCGTGGAC-TT-AGAAAAAAGATGCCACTGAGTCGTGGACTTT
33553 G
63 G
*
33554 -AGAAAAGAGAT
1 AAGAAAAAAGAT
33565 TTAAAGAATT
Statistics
Matches: 270, Mismatches: 40, Indels: 35
0.78 0.12 0.10
Matches are distributed among these distances:
61 20 0.07
62 75 0.28
63 68 0.25
64 38 0.14
65 39 0.14
66 22 0.08
67 8 0.03
ACGTcount: A:0.36, C:0.15, G:0.27, T:0.23
Consensus pattern (63 bp):
AAGAAAAAAGATGCCACTGAGTCGTGGACTTAGAAAAAAGATGCCACTGAGTCGTGGACTTTG
Found at i:33431 original size:95 final size:94
Alignment explanation
Indices: 33243--33551 Score: 381
Period size: 95 Copynumber: 3.2 Consensus size: 94
33233 CTTTGGGAAG
* * * * *
33243 AAATGCCACTGAGTCATGGACTTTG-AAAAAAGATTGCCACTGTGTCGTGGACTTTGAAGAAAAA
1 AAATGCCACTGAGTCGTGGACTTGGAAAAAAAGA-TGCCACTGAGTCGTGGTC-TT--AGAAAAG
* * * *
33307 AAATGCCAATGAGTTGTGGACTTTGAAGAAAAA
62 AGATGCCACTGAGTCGTAGACTTTGAAGAAAAA
33340 AAATGCCACTGAGTCGTGGACTTGGAAAAAAATGATGCCACTGAGTCGTGGTCTTAGAAAAGAGA
1 AAATGCCACTGAGTCGTGGACTTGGAAAAAAA-GATGCCACTGAGTCGTGGTCTTAGAAAAGAGA
*
33405 TGCCACTGAGTCGTTGACTTTGAAGAAAAA
65 TGCCACTGAGTCGTAGACTTTGAAGAAAAA
* * * *
33435 AGATGCCACTGAGTCGTAGACTTGGAAGAAAAGCATGCCACTGAGTCATGGTCTTAGAAAAGAGA
1 AAATGCCACTGAGTCGTGGACTTGGAAAAAAAG-ATGCCACTGAGTCGTGGTCTTAGAAAAGAGA
*
33500 TGCCACT-AGGTCGTAGACTTTG-AGAAAAG
65 TGCCACTGA-GTCGTAGACTTTGAAGAAAAA
* *
33529 AGATGCCACTGAGTTGTGGACTT
1 AAATGCCACTGAGTCGTGGACTT
33552 TGAGAAAAGA
Statistics
Matches: 191, Mismatches: 17, Indels: 11
0.87 0.08 0.05
Matches are distributed among these distances:
94 29 0.15
95 113 0.59
97 25 0.13
98 22 0.12
99 2 0.01
ACGTcount: A:0.35, C:0.16, G:0.26, T:0.24
Consensus pattern (94 bp):
AAATGCCACTGAGTCGTGGACTTGGAAAAAAAGATGCCACTGAGTCGTGGTCTTAGAAAAGAGAT
GCCACTGAGTCGTAGACTTTGAAGAAAAA
Found at i:33463 original size:33 final size:33
Alignment explanation
Indices: 33115--33564 Score: 345
Period size: 33 Copynumber: 14.0 Consensus size: 33
33105 CTTTAAAGGG
* * ** *
33115 TGCCACAGAGTTGTGGACTTAAAAGGAAAAAGA
1 TGCCACTGAGTCGTGGACTTTGAAGAAAAAAGA
* * *
33148 GTGCCACAGAGTTGTAGG-CTTTAAAAAGAAAAAAG-
1 -TGCCACTGAGTCGT-GGACTTT--GAAGAAAAAAGA
*
33183 TGCCACAT-AGTTGTGGACTTTGAA-AAGAAAACG-
1 TGCCAC-TGAGTCGTGGACTTTGAAGAA-AAAA-GA
* * *
33216 TGCCAC-AAGGTCGTGGACTTTG--GGAAGAA-A
1 TGCCACTGA-GTCGTGGACTTTGAAGAAAAAAGA
*
33246 TGCCACTGAGTCATGGACTTT---GAAAAAAGA
1 TGCCACTGAGTCGTGGACTTTGAAGAAAAAAGA
* *
33276 TTGCCACTGTGTCGTGGACTTTGAAGAAAAAAAA
1 -TGCCACTGAGTCGTGGACTTTGAAGAAAAAAGA
* * *
33310 TGCCAATGAGTTGTGGACTTTGAAGAAAAAAAA
1 TGCCACTGAGTCGTGGACTTTGAAGAAAAAAGA
* *
33343 TGCCACTGAGTCGTGGACTTGGAA-AAAAATGA
1 TGCCACTGAGTCGTGGACTTTGAAGAAAAAAGA
* *
33375 TGCCACTGAGTCGTGGTC-TT--AGAAAAGAGA
1 TGCCACTGAGTCGTGGACTTTGAAGAAAAAAGA
*
33405 TGCCACTGAGTCGTTGACTTTGAAGAAAAAAGA
1 TGCCACTGAGTCGTGGACTTTGAAGAAAAAAGA
* *
33438 TGCCACTGAGTCGTAGACTTGGAAG--AAAAGCA
1 TGCCACTGAGTCGTGGACTTTGAAGAAAAAAG-A
* * *
33470 TGCCACTGAGTCATGGTC-TT--AGAAAAGAGA
1 TGCCACTGAGTCGTGGACTTTGAAGAAAAAAGA
* *
33500 TGCCACT-AGGTCGTAGACTTTG-AGAAAAGAGA
1 TGCCACTGA-GTCGTGGACTTTGAAGAAAAAAGA
* *
33532 TGCCACTGAGTTGTGGACTTTG-AGAAAAGAGA
1 TGCCACTGAGTCGTGGACTTTGAAGAAAAAAGA
33564 T
1 T
33565 TTAAAGAATT
Statistics
Matches: 347, Mismatches: 41, Indels: 58
0.78 0.09 0.13
Matches are distributed among these distances:
29 9 0.03
30 54 0.16
31 40 0.12
32 86 0.25
33 105 0.30
34 41 0.12
35 2 0.01
36 10 0.03
ACGTcount: A:0.36, C:0.15, G:0.27, T:0.23
Consensus pattern (33 bp):
TGCCACTGAGTCGTGGACTTTGAAGAAAAAAGA
Found at i:34857 original size:25 final size:25
Alignment explanation
Indices: 34828--34892 Score: 80
Period size: 25 Copynumber: 2.6 Consensus size: 25
34818 GCCTTTGCAC
* *
34828 TTTTTTTGTGTTTTTT-TTTATTTTT
1 TTTTTTTGTGTTTTTTCTTT-TCTCT
34853 GTTTTTTTG-GTTTTTTCTTTTCTCT
1 -TTTTTTTGTGTTTTTTCTTTTCTCT
34878 TTTTTTTGTGTTTTT
1 TTTTTTTGTGTTTTT
34893 ACTTGTGACT
Statistics
Matches: 35, Mismatches: 2, Indels: 5
0.83 0.05 0.12
Matches are distributed among these distances:
24 8 0.23
25 16 0.46
26 11 0.31
ACGTcount: A:0.02, C:0.05, G:0.11, T:0.83
Consensus pattern (25 bp):
TTTTTTTGTGTTTTTTCTTTTCTCT
Found at i:34904 original size:25 final size:24
Alignment explanation
Indices: 34854--34906 Score: 61
Period size: 25 Copynumber: 2.2 Consensus size: 24
34844 TTTATTTTTG
* * *
34854 TTTTTTTGGTTTTTTCTTTTCTCT
1 TTTTTTTGGTTTTTACTTGTCACT
*
34878 TTTTTTTGTGTTTTTACTTGTGACT
1 TTTTTTTG-GTTTTTACTTGTCACT
34903 TTTT
1 TTTT
34907 CATCATTTTT
Statistics
Matches: 24, Mismatches: 4, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
24 8 0.33
25 16 0.67
ACGTcount: A:0.04, C:0.09, G:0.11, T:0.75
Consensus pattern (24 bp):
TTTTTTTGGTTTTTACTTGTCACT
Found at i:41991 original size:21 final size:19
Alignment explanation
Indices: 41940--41993 Score: 54
Period size: 21 Copynumber: 2.7 Consensus size: 19
41930 TATCAATACA
41940 TTGTATCGATACAATACTT
1 TTGTATCGATACAATACTT
* * * *
41959 ATGTGTCAATACATTTACTGT
1 TTGTATCGATACA-ATACT-T
41980 TTGTATCGATACAA
1 TTGTATCGATACAA
41994 ATTGTTGAAC
Statistics
Matches: 25, Mismatches: 8, Indels: 3
0.69 0.22 0.08
Matches are distributed among these distances:
19 10 0.40
20 4 0.16
21 11 0.44
ACGTcount: A:0.31, C:0.15, G:0.13, T:0.41
Consensus pattern (19 bp):
TTGTATCGATACAATACTT
Found at i:43183 original size:62 final size:62
Alignment explanation
Indices: 43086--43207 Score: 217
Period size: 62 Copynumber: 2.0 Consensus size: 62
43076 TGTATAACGA
* *
43086 CTTGCCCCGTCGATACATATCCAAGTGTAGCGCACCTATTCCCTTTAGGACACTTTATTCGG
1 CTTGCCCCGTCAATACATATCCAAGTGTAGAGCACCTATTCCCTTTAGGACACTTTATTCGG
*
43148 CTTGCCCCGTCAATACATATCCAAGTTTAGAGCACCTATTCCCTTTAGGACACTTTATTC
1 CTTGCCCCGTCAATACATATCCAAGTGTAGAGCACCTATTCCCTTTAGGACACTTTATTC
43208 AAACTGAGCC
Statistics
Matches: 57, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
62 57 1.00
ACGTcount: A:0.23, C:0.30, G:0.15, T:0.32
Consensus pattern (62 bp):
CTTGCCCCGTCAATACATATCCAAGTGTAGAGCACCTATTCCCTTTAGGACACTTTATTCGG
Found at i:43914 original size:21 final size:21
Alignment explanation
Indices: 43888--43928 Score: 82
Period size: 21 Copynumber: 2.0 Consensus size: 21
43878 ACTTCATCAT
43888 CCGAGATATATATATATATAA
1 CCGAGATATATATATATATAA
43909 CCGAGATATATATATATATA
1 CCGAGATATATATATATATA
43929 TGTATAACAA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.46, C:0.10, G:0.10, T:0.34
Consensus pattern (21 bp):
CCGAGATATATATATATATAA
Found at i:46894 original size:43 final size:42
Alignment explanation
Indices: 46843--46970 Score: 107
Period size: 43 Copynumber: 3.2 Consensus size: 42
46833 ATCGATACAT
46843 TGTATCGATGGAAATAGTGGTAGGGTAGCTACTGCCAGTTTCA
1 TGTATCGAT-GAAATAGTGGTAGGGTAGCTACTGCCAGTTTCA
** * *
46886 TGTATCGAT-ACAAT-GTGCCA---T-G-TA-T--C-GATACA
1 TGTATCGATGA-AATAGTGGTAGGGTAGCTACTGCCAGTTTCA
46918 TTGTATCGATGCAAATAGTGGTAGGGTAGCTACTGCCAGTTTCA
1 -TGTATCGATG-AAATAGTGGTAGGGTAGCTACTGCCAGTTTCA
46962 TGTATCGAT
1 TGTATCGAT
46971 ACAATTGTGC
Statistics
Matches: 63, Mismatches: 8, Indels: 28
0.64 0.08 0.28
Matches are distributed among these distances:
32 4 0.06
33 10 0.16
34 3 0.05
35 6 0.10
36 2 0.03
37 1 0.02
38 2 0.03
39 1 0.02
40 2 0.03
41 6 0.10
42 3 0.05
43 19 0.30
44 4 0.06
ACGTcount: A:0.27, C:0.16, G:0.26, T:0.32
Consensus pattern (42 bp):
TGTATCGATGAAATAGTGGTAGGGTAGCTACTGCCAGTTTCA
Found at i:46944 original size:76 final size:76
Alignment explanation
Indices: 46818--46993 Score: 327
Period size: 76 Copynumber: 2.3 Consensus size: 76
46808 ACAATTCTTC
*
46818 TACAATGTGCCATGTATCGATACATTGTATCGATGGAAATAGTGGTAGGGTAGCTACTGCCAGTT
1 TACAATGTGCCATGTATCGATACATTGTATCGATGCAAATAGTGGTAGGGTAGCTACTGCCAGTT
46883 TCATGTATCGA
66 TCATGTATCGA
46894 TACAATGTGCCATGTATCGATACATTGTATCGATGCAAATAGTGGTAGGGTAGCTACTGCCAGTT
1 TACAATGTGCCATGTATCGATACATTGTATCGATGCAAATAGTGGTAGGGTAGCTACTGCCAGTT
46959 TCATGTATCGA
66 TCATGTATCGA
46970 TACAATTGTG-CATGTATCGATACA
1 TACAA-TGTGCCATGTATCGATACA
46994 ATGATCATGT
Statistics
Matches: 98, Mismatches: 1, Indels: 2
0.97 0.01 0.02
Matches are distributed among these distances:
76 94 0.96
77 4 0.04
ACGTcount: A:0.28, C:0.16, G:0.23, T:0.32
Consensus pattern (76 bp):
TACAATGTGCCATGTATCGATACATTGTATCGATGCAAATAGTGGTAGGGTAGCTACTGCCAGTT
TCATGTATCGA
Found at i:47004 original size:19 final size:18
Alignment explanation
Indices: 46959--47016 Score: 80
Period size: 19 Copynumber: 3.1 Consensus size: 18
46949 ACTGCCAGTT
46959 TCATGTATCGATACAATTG
1 TCATGTATCGATACAA-TG
46978 TGCATGTATCGATACAATG
1 T-CATGTATCGATACAATG
*
46997 ATCATGTATCGACACAATG
1 -TCATGTATCGATACAATG
47016 T
1 T
47017 ATCGATGCAA
Statistics
Matches: 36, Mismatches: 1, Indels: 5
0.86 0.02 0.12
Matches are distributed among these distances:
18 1 0.03
19 19 0.53
20 16 0.44
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Consensus pattern (18 bp):
TCATGTATCGATACAATG
Found at i:47607 original size:19 final size:19
Alignment explanation
Indices: 47568--47604 Score: 58
Period size: 18 Copynumber: 2.0 Consensus size: 19
47558 AATTTCTCTA
47568 AATGCAAAAATTTTCGTTT
1 AATGCAAAAATTTTCGTTT
*
47587 AATGC-AAAATTTTTGTTT
1 AATGCAAAAATTTTCGTTT
47605 TAAAGCTCTC
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
18 12 0.71
19 5 0.29
ACGTcount: A:0.35, C:0.08, G:0.11, T:0.46
Consensus pattern (19 bp):
AATGCAAAAATTTTCGTTT
Found at i:49717 original size:20 final size:20
Alignment explanation
Indices: 49692--49733 Score: 59
Period size: 20 Copynumber: 2.1 Consensus size: 20
49682 TATCAATCCT
49692 AATTCATATCAA-ACAAATAA
1 AATTCA-ATCAACACAAATAA
*
49712 AATTCAATCAACACCAATAA
1 AATTCAATCAACACAAATAA
49732 AA
1 AA
49734 CAACATATTT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
19 5 0.25
20 15 0.75
ACGTcount: A:0.60, C:0.19, G:0.00, T:0.21
Consensus pattern (20 bp):
AATTCAATCAACACAAATAA
Found at i:55393 original size:225 final size:224
Alignment explanation
Indices: 55002--55447 Score: 671
Period size: 225 Copynumber: 2.0 Consensus size: 224
54992 TACCAATTGT
55002 AAGCTCAAAGAATAATGAACCAAGAGGGGGTGAATTGGTTCTTTTCAAATTTTGAATGTTTTGAA
1 AAGCTCAAAGAATAATGAACCAAGAGGGGGTGAATTGGTTCTTTTCAAATTTTGAATGTTTTGAA
* * * * *
55067 AGATTTGATGCAAAACAATTCGAAAGATAAAAAGATTAAGGAGGAAAAGCTTGATACAAGAGTTT
66 AGATTTGATGCAAAACAATTCAAAAGATAAAAAGATTAAGGAAGAAAAGATCGACACAAGAGTTT
* * *
55132 ATAGAGGTTCGTTCCAATCCGGTACCTACATCCTCTCTCCTCGATACTTTCTCGTCGAGTGCTTA
131 ATAGAGGTTCGATCCAATCCGGTACCTACATCCTCTCTCCTCGACACTTCCTCGTCGAGTGCTTA
55197 TCCAATTCACTACAAGAATTGATTACTGA
196 TCCAATTCACTACAAGAATTGATTACTGA
* *
55226 AAGCTCAAGGAATAATGAACCAAGAGGGGGGTGAATTGGTTCTTTTCGAATTTTGAGAAT-TTTT
1 AAGCTCAAAGAATAATGAACCAAGA-GGGGGTGAATTGGTTCTTTTCAAATTTT--GAATGTTTT
* * * *
55290 -AAAGGTTTGGTGCAAAATAATTCAAAAGATAAAAAGATTAAGGAAGAAATGATCGACACAAGAG
63 GAAAGATTTGATGCAAAACAATTCAAAAGATAAAAAGATTAAGGAAGAAAAGATCGACACAAGAG
* * * * *
55354 TTTATAGAGGTTCGATCCAATCTGGTACCTACGTCCTCTCTCCTTGACACTTCCTTGTCGAGTGG
128 TTTATAGAGGTTCGATCCAATCCGGTACCTACATCCTCTCTCCTCGACACTTCCTCGTCGAGTGC
*
55419 TTATCCAATTCACTACTAGAATTGATTAC
193 TTATCCAATTCACTACAAGAATTGATTAC
55448 CTTTAAGGGA
Statistics
Matches: 199, Mismatches: 20, Indels: 5
0.89 0.09 0.02
Matches are distributed among these distances:
224 24 0.12
225 167 0.84
226 4 0.02
227 4 0.02
ACGTcount: A:0.34, C:0.16, G:0.20, T:0.30
Consensus pattern (224 bp):
AAGCTCAAAGAATAATGAACCAAGAGGGGGTGAATTGGTTCTTTTCAAATTTTGAATGTTTTGAA
AGATTTGATGCAAAACAATTCAAAAGATAAAAAGATTAAGGAAGAAAAGATCGACACAAGAGTTT
ATAGAGGTTCGATCCAATCCGGTACCTACATCCTCTCTCCTCGACACTTCCTCGTCGAGTGCTTA
TCCAATTCACTACAAGAATTGATTACTGA
Found at i:55928 original size:33 final size:33
Alignment explanation
Indices: 55891--55957 Score: 91
Period size: 33 Copynumber: 2.0 Consensus size: 33
55881 TCCCGTAGCC
* *
55891 ATGTATCGATACAAT-TCATCATGTATCGATACA
1 ATGTATCGATACAATGT-ACCATATATCGATACA
*
55924 ATGTATTGATACAATGTACCATATATCGATACA
1 ATGTATCGATACAATGTACCATATATCGATACA
55957 A
1 A
55958 ACAGTGGTAG
Statistics
Matches: 30, Mismatches: 3, Indels: 2
0.86 0.09 0.06
Matches are distributed among these distances:
33 29 0.97
34 1 0.03
ACGTcount: A:0.39, C:0.16, G:0.12, T:0.33
Consensus pattern (33 bp):
ATGTATCGATACAATGTACCATATATCGATACA
Found at i:55929 original size:13 final size:13
Alignment explanation
Indices: 55911--55941 Score: 53
Period size: 13 Copynumber: 2.4 Consensus size: 13
55901 ACAATTCATC
55911 ATGTATCGATACA
1 ATGTATCGATACA
*
55924 ATGTATTGATACA
1 ATGTATCGATACA
55937 ATGTA
1 ATGTA
55942 CCATATATCG
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 17 1.00
ACGTcount: A:0.39, C:0.10, G:0.16, T:0.35
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:56030 original size:19 final size:20
Alignment explanation
Indices: 55986--56034 Score: 64
Period size: 20 Copynumber: 2.5 Consensus size: 20
55976 CTGCCAGTTT
* **
55986 CATGTATCGATACAATTGTC
1 CATGTATCGAGACAATTGAA
56006 CATGTATCGAGACAA-TGAA
1 CATGTATCGAGACAATTGAA
56025 CATGTATCGA
1 CATGTATCGA
56035 CACATCTGGG
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
19 12 0.46
20 14 0.54
ACGTcount: A:0.35, C:0.18, G:0.18, T:0.29
Consensus pattern (20 bp):
CATGTATCGAGACAATTGAA
Found at i:58541 original size:13 final size:13
Alignment explanation
Indices: 58523--58548 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
58513 TAGTACCTCT
58523 TGTATCGATACAA
1 TGTATCGATACAA
58536 TGTATCGATACAA
1 TGTATCGATACAA
58549 GGAATATTGT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:58716 original size:18 final size:20
Alignment explanation
Indices: 58675--58727 Score: 58
Period size: 20 Copynumber: 2.7 Consensus size: 20
58665 CTATAGACCC
58675 TAATTCACATCAAACAAGTA
1 TAATTCACATCAAACAAGTA
58695 TAATTCA-AT-AACACAA-TA
1 TAATTCACATCAA-ACAAGTA
*
58713 TAATTGAACATCAAA
1 TAATT-CACATCAAA
58728 TTCATCCAAT
Statistics
Matches: 28, Mismatches: 1, Indels: 8
0.76 0.03 0.22
Matches are distributed among these distances:
18 9 0.32
19 7 0.25
20 10 0.36
21 2 0.07
ACGTcount: A:0.53, C:0.17, G:0.04, T:0.26
Consensus pattern (20 bp):
TAATTCACATCAAACAAGTA
Found at i:63096 original size:18 final size:18
Alignment explanation
Indices: 63075--63109 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
63065 TCCGAGTCAC
63075 CATCATCATCATCATTGT
1 CATCATCATCATCATTGT
*
63093 CATCTTCATCATCATTG
1 CATCATCATCATCATTG
63110 ATGGTTGACT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.26, C:0.29, G:0.06, T:0.40
Consensus pattern (18 bp):
CATCATCATCATCATTGT
Found at i:64749 original size:33 final size:33
Alignment explanation
Indices: 64691--64759 Score: 95
Period size: 33 Copynumber: 2.1 Consensus size: 33
64681 CCATTAGAAG
* *
64691 CAATGTATCGATATAATTCATCATGTATCAATA
1 CAATGTATCGATATAATTCACCATGTAACAATA
*
64724 CAATGTATCGATATAATGT-ACCATGTAACGATA
1 CAATGTATCGATATAAT-TCACCATGTAACAATA
64757 CAA
1 CAA
64760 ACAGTGATAG
Statistics
Matches: 32, Mismatches: 3, Indels: 2
0.86 0.08 0.05
Matches are distributed among these distances:
33 31 0.97
34 1 0.03
ACGTcount: A:0.41, C:0.16, G:0.12, T:0.32
Consensus pattern (33 bp):
CAATGTATCGATATAATTCACCATGTAACAATA
Found at i:65761 original size:19 final size:19
Alignment explanation
Indices: 65716--65767 Score: 70
Period size: 20 Copynumber: 2.7 Consensus size: 19
65706 ACTGCCAGTT
65716 TCATGTATCAATACAATTG
1 TCATGTATCAATACAATTG
*
65735 TGCATGTATCGATACAA-TG
1 T-CATGTATCAATACAATTG
65754 ATCATGTATCAATA
1 -TCATGTATCAATA
65768 TAATATATCG
Statistics
Matches: 29, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
19 14 0.48
20 15 0.52
ACGTcount: A:0.37, C:0.15, G:0.13, T:0.35
Consensus pattern (19 bp):
TCATGTATCAATACAATTG
Found at i:68013 original size:13 final size:13
Alignment explanation
Indices: 67995--68019 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
67985 CATGGTACGT
67995 TGTATCGATACAA
1 TGTATCGATACAA
68008 TGTATCGATACA
1 TGTATCGATACA
68020 TGAAGAATTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:71186 original size:13 final size:13
Alignment explanation
Indices: 71168--71194 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
71158 ACATTATGCT
71168 TTGTATCGATACA
1 TTGTATCGATACA
71181 TTGTATCGATACA
1 TTGTATCGATACA
71194 T
1 T
71195 GCTCATTGTA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.30, C:0.15, G:0.15, T:0.41
Consensus pattern (13 bp):
TTGTATCGATACA
Found at i:71224 original size:20 final size:19
Alignment explanation
Indices: 71178--71234 Score: 87
Period size: 19 Copynumber: 2.9 Consensus size: 19
71168 TTGTATCGAT
71178 ACATTGTATCGATACATGC
1 ACATTGTATCGATACATGC
* *
71197 TCATTGTATCGATACATGG
1 ACATTGTATCGATACATGC
71216 ACAATTGTATCGATACATG
1 AC-ATTGTATCGATACATG
71235 AGATTGGCAG
Statistics
Matches: 34, Mismatches: 3, Indels: 1
0.89 0.08 0.03
Matches are distributed among these distances:
19 18 0.53
20 16 0.47
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.33
Consensus pattern (19 bp):
ACATTGTATCGATACATGC
Found at i:71326 original size:34 final size:32
Alignment explanation
Indices: 71263--71331 Score: 95
Period size: 34 Copynumber: 2.1 Consensus size: 32
71253 CTATCACTAT
*
71263 TTGTATCGATACATGGACAATGTATCGATACA
1 TTGTATCAATACATGGACAATGTATCGATACA
71295 TTGTATCAATACATGAGGA-AATTGTATCGATACA
1 TTGTATCAATACAT--GGACAA-TGTATCGATACA
71329 TTG
1 TTG
71332 CTTGTAACGG
Statistics
Matches: 33, Mismatches: 1, Indels: 4
0.87 0.03 0.11
Matches are distributed among these distances:
32 13 0.39
33 2 0.06
34 18 0.55
ACGTcount: A:0.35, C:0.13, G:0.19, T:0.33
Consensus pattern (32 bp):
TTGTATCAATACATGGACAATGTATCGATACA
Found at i:71425 original size:86 final size:86
Alignment explanation
Indices: 71280--71468 Score: 378
Period size: 86 Copynumber: 2.2 Consensus size: 86
71270 GATACATGGA
71280 CAATGTATCGATACATTGTATCAATACATGAGGAAATTGTATCGATACATTGCTTGTAACGGCTA
1 CAATGTATCGATACATTGTATCAATACATGAGGAAATTGTATCGATACATTGCTTGTAACGGCTA
71345 TAAACGGCTATAATTTCAAAT
66 TAAACGGCTATAATTTCAAAT
71366 CAATGTATCGATACATTGTATCAATACATGAGGAAATTGTATCGATACATTGCTTGTAACGGCTA
1 CAATGTATCGATACATTGTATCAATACATGAGGAAATTGTATCGATACATTGCTTGTAACGGCTA
71431 TAAACGGCTATAATTTCAAAT
66 TAAACGGCTATAATTTCAAAT
71452 CAATGTATCGATACATT
1 CAATGTATCGATACATT
71469 ATAAATTGTA
Statistics
Matches: 103, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
86 103 1.00
ACGTcount: A:0.36, C:0.15, G:0.16, T:0.33
Consensus pattern (86 bp):
CAATGTATCGATACATTGTATCAATACATGAGGAAATTGTATCGATACATTGCTTGTAACGGCTA
TAAACGGCTATAATTTCAAAT
Found at i:73011 original size:3 final size:3
Alignment explanation
Indices: 73003--73030 Score: 56
Period size: 3 Copynumber: 9.3 Consensus size: 3
72993 TGAAGAGGAA
73003 GAT GAT GAT GAT GAT GAT GAT GAT GAT G
1 GAT GAT GAT GAT GAT GAT GAT GAT GAT G
73031 GTGACTCGGA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 25 1.00
ACGTcount: A:0.32, C:0.00, G:0.36, T:0.32
Consensus pattern (3 bp):
GAT
Found at i:78636 original size:13 final size:13
Alignment explanation
Indices: 78618--78644 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
78608 ACATTATGCT
78618 TTGTATCGATACA
1 TTGTATCGATACA
78631 TTGTATCGATACA
1 TTGTATCGATACA
78644 T
1 T
78645 GCTCATTGTA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.30, C:0.15, G:0.15, T:0.41
Consensus pattern (13 bp):
TTGTATCGATACA
Found at i:78674 original size:20 final size:19
Alignment explanation
Indices: 78628--78684 Score: 87
Period size: 19 Copynumber: 2.9 Consensus size: 19
78618 TTGTATCGAT
78628 ACATTGTATCGATACATGC
1 ACATTGTATCGATACATGC
* *
78647 TCATTGTATCGATACATGG
1 ACATTGTATCGATACATGC
78666 ACAATTGTATCGATACATG
1 AC-ATTGTATCGATACATG
78685 AGATTGGCAG
Statistics
Matches: 34, Mismatches: 3, Indels: 1
0.89 0.08 0.03
Matches are distributed among these distances:
19 18 0.53
20 16 0.47
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.33
Consensus pattern (19 bp):
ACATTGTATCGATACATGC
Found at i:78731 original size:13 final size:13
Alignment explanation
Indices: 78713--78762 Score: 56
Period size: 13 Copynumber: 4.2 Consensus size: 13
78703 CTATCACTAT
78713 TTGTATCGATACA
1 TTGTATCGATACA
78726 TTGTATCGATACA
1 TTGTATCGATACA
*
78739 -TG-A-GGA-A-A
1 TTGTATCGATACA
78747 TTGTATCGATACA
1 TTGTATCGATACA
78760 TTG
1 TTG
78763 CTTGTAACGC
Statistics
Matches: 30, Mismatches: 2, Indels: 10
0.71 0.05 0.24
Matches are distributed among these distances:
8 1 0.03
9 3 0.10
10 3 0.10
11 3 0.10
12 3 0.10
13 17 0.57
ACGTcount: A:0.32, C:0.12, G:0.20, T:0.36
Consensus pattern (13 bp):
TTGTATCGATACA
Found at i:80576 original size:20 final size:20
Alignment explanation
Indices: 80551--80604 Score: 76
Period size: 20 Copynumber: 2.7 Consensus size: 20
80541 GTTTGAAGCA
80551 ATGTATCGATACAAT-T-CATC
1 ATGTATCGATACAATGTGC--C
80571 ATGTATCGATACAATGTGCC
1 ATGTATCGATACAATGTGCC
80591 ATGTATCGATACAA
1 ATGTATCGATACAA
80605 ATAGTGGTAG
Statistics
Matches: 32, Mismatches: 0, Indels: 4
0.89 0.00 0.11
Matches are distributed among these distances:
20 30 0.94
21 1 0.03
22 1 0.03
ACGTcount: A:0.35, C:0.19, G:0.15, T:0.31
Consensus pattern (20 bp):
ATGTATCGATACAATGTGCC
Found at i:85148 original size:164 final size:164
Alignment explanation
Indices: 84964--85546 Score: 443
Period size: 164 Copynumber: 3.5 Consensus size: 164
84954 AATATATGCA
* * * *
84964 AAAAAATTCAAAATTCATGAAATAAATTAAATTTTTTAAAACTGATTTTATGGGAGTTTAATAAC
1 AAAAAATTCAAAACTCATGAAATAAATT-AATTTTTCAAAACTGATTTAATAGGAGTTTAATAAC
85029 AATATTAGATGAAA-TTTAAAAATTTTAAA-CTGAAAAAAATCCCCCA-AAAAAAATTACGAAG-
65 AATATTAGAT-AAATTTTAAAAATTTTAAATC-GAAAAAAATCCCCCAGAAAAAAATTA--AAGA
* *
85090 GAGAAAACTCGGTTTCTCA-CAAAAAGGGA-ATTTCAAAG
126 GAGAAAACTCAGTTT-TCAGAAAAAAGGGACATTTCAAAG
* * *
85128 AAAAAATTCAAAACTCATGAAA-ACGAATTAATTTTTCAAACCTGAATTAATAGGAGTTTAATGA
1 AAAAAATTCAAAACTCATGAAATA--AATTAATTTTTCAAAACTGATTTAATAGGAGTTTAATAA
* * * * *** * *
85192 TAATATTAGATAAATTTTAAAAATTTTACATCGAGAAAAATCCCCTAGAAAACTTTTATAGATAG
64 CAATATTAGATAAATTTTAAAAATTTTAAATCGAAAAAAATCCCCCAGAAAAAAATTAAAGAGAG
* *
85257 AAAACTCAGTTTTTAGAAAAAAGTGACATTTCAAAG
129 AAAACTCAGTTTTCAGAAAAAAGGGACATTTCAAAG
* * * * * *
85293 AAAAAACTCCAAAACTTATGAAAATGAATTAATTTTTCAAAACTGATTTAATATGAGTTAAATGA
1 AAAAAA-TTCAAAACTCATG-AAATAAATTAATTTTTCAAAACTGATTTAATAGGAGTTTAATAA
** ** ** ** * * * **
85358 TGATATTTTACGAATTTTAAAAA-TAAAAAACCAGGAAAAATCCCCCA-AAAAAGTTTATGAA-A
64 CAATATTAGATAAATTTTAAAAATTTTAAATCGA-AAAAAATCCCCCAGAAAAAAATTA--AAGA
* * * ** *
85420 TAGAAAACTTGATTTTTTGGGAAAAAGGG-CATTTCAAAG
126 GAGAAAAC-TCAGTTTTCAGAAAAAAGGGACATTTCAAAG
* * * * ** *
85459 AAAAAATCCGAAACTTATGAAAATGAATTAATTTTTTC-AAACTGATTTAATATAAGTTAAATAA
1 AAAAAATTCAAAACTCATG-AAATAAATTAA-TTTTTCAAAACTGATTTAATAGGAGTTTAATAA
** *
85523 TGATATTTGATAAATTTTAAAAAT
64 CAATATTAGATAAATTTTAAAAAT
85547 AAAAAAAACC
Statistics
Matches: 350, Mismatches: 52, Indels: 32
0.81 0.12 0.07
Matches are distributed among these distances:
163 8 0.02
164 108 0.31
165 108 0.31
166 107 0.31
167 19 0.05
ACGTcount: A:0.48, C:0.10, G:0.11, T:0.31
Consensus pattern (164 bp):
AAAAAATTCAAAACTCATGAAATAAATTAATTTTTCAAAACTGATTTAATAGGAGTTTAATAACA
ATATTAGATAAATTTTAAAAATTTTAAATCGAAAAAAATCCCCCAGAAAAAAATTAAAGAGAGAA
AACTCAGTTTTCAGAAAAAAGGGACATTTCAAAG
Found at i:85376 original size:166 final size:166
Alignment explanation
Indices: 85063--85711 Score: 568
Period size: 166 Copynumber: 3.9 Consensus size: 166
85053 TTAAACTGAA
** * ** * * * *
85063 AAAAATCCCCCAAAAAAAATTACGAAGGAGAAAAC-TCGGTTTCTCACAAAAAGGGA-ATTTCAA
1 AAAAATCCCCCAAAAAAGTTTATGAAATAGAAAACTTCAGTTT-TTAGAAAAAAGGACATTTCAA
* * * * * * *
85126 AGAAAAAATTCAAAACTCATGAAAACGAATTAATTTTTCAAACCTGAATTAATAGGAGTTTAATG
65 AGAAAAAATCCAAAACTTATGAAAATGAATTAATTTTTCAAAACTGATTTAATATGAGTTAAATG
* * ** * * *
85191 ATAATATTAGATAAATTTTAAAAATTTTACATCGA-G
130 ATGATATTTGATAAATTTTAAAAATTAAAAAACCAGG
* ** *
85227 AAAAATCCCCTAGAAAACTTTTAT-AGATAGAAAAC-TCAGTTTTTAGAAAAAAGTGACATTTCA
1 AAAAATCCCCCA-AAAAAGTTTATGAAATAGAAAACTTCAGTTTTTAGAAAAAAG-GACATTTCA
85290 AAGAAAAAACTCCAAAACTTATGAAAATGAATTAATTTTTCAAAACTGATTTAATATGAGTTAAA
64 AAGAAAAAA-TCCAAAACTTATGAAAATGAATTAATTTTTCAAAACTGATTTAATATGAGTTAAA
* **
85355 TGATGATATTTTACGAATTTTAAAAA-TAAAAAACCAGG
128 TGATGATATTTGATAAATTTTAAAAATTAAAAAACCAGG
* * * * *
85393 AAAAATCCCCCAAAAAAGTTTATGAAATAGAAAACTTGATTTTTTGGGAAAAAGGGCATTTCAAA
1 AAAAATCCCCCAAAAAAGTTTATGAAATAGAAAACTTCAGTTTTTAGAAAAAAGGACATTTCAAA
* * *
85458 GAAAAAATCCGAAACTTATGAAAATGAATTAATTTTTTC-AAACTGATTTAATATAAGTTAAATA
66 GAAAAAATCCAAAACTTATGAAAATGAATTAA-TTTTTCAAAACTGATTTAATATGAGTTAAATG
*
85522 ATGATATTTGATAAATTTTAAAAATAAAAAAAACCA--
130 ATGATATTTGATAAATTTTAAAAAT-TAAAAAACCAGG
* * * * * * * ** *
85558 AGAAAT-GCCCATGAAAAAATTTATGAAGTAGAAAACTCCA-TATTTCGAAAACGGGAGAATTTC
1 AAAAATCCCCCA--AAAAAGTTTATGAAATAGAAAACTTCAGTTTTTAGAAAAAAGGA-CATTTC
** * ** * * * **
85621 -AA-AAAAAATAGAAAACTCATGAAAATGAAGGAATTTTTGAAAACTAATTTAATGTGAAATAAA
63 AAAGAAAAAATCCAAAACTTATGAAAATGAATTAATTTTTCAAAACTGATTTAATATGAGTTAAA
* * *
85684 TAATAATATTTGATGAATTTTAAAAATT
128 TGATGATATTTGATAAATTTTAAAAATT
85712 TTAAACCCAT
Statistics
Matches: 398, Mismatches: 73, Indels: 29
0.80 0.15 0.06
Matches are distributed among these distances:
163 13 0.03
164 99 0.25
165 121 0.30
166 142 0.36
167 23 0.06
ACGTcount: A:0.49, C:0.10, G:0.12, T:0.29
Consensus pattern (166 bp):
AAAAATCCCCCAAAAAAGTTTATGAAATAGAAAACTTCAGTTTTTAGAAAAAAGGACATTTCAAA
GAAAAAATCCAAAACTTATGAAAATGAATTAATTTTTCAAAACTGATTTAATATGAGTTAAATGA
TGATATTTGATAAATTTTAAAAATTAAAAAACCAGG
Found at i:89462 original size:166 final size:164
Alignment explanation
Indices: 89263--89642 Score: 391
Period size: 165 Copynumber: 2.3 Consensus size: 164
89253 TAATTACCTT
* * * *
89263 TAAATCAGTTTTTCAAAATTCCTTTCA-TTTCATGAGTTTTTCATTTTTTCCTTGAAATCATCTT
1 TAAATCAG-TTTTGAAAATTCATTT-ATTTTCATGAGTTTTTCATTTTTTCCTTAAAATCATCCT
**
89327 ATT-TCT-AAAATATGAAGTTTGCTACTTC-ATAAATGTTTTCG-GGAGGGGTTTTCTCA-GTTC
64 ATTCT-TGAAAA-AT-AAGTTTGCTA-TTCTATAAATGTTTTCGAGGA-AAGTTTTCT-AGGTTC
* * *
89387 AAAATTTTTTATATTCATCAAATATCATCATTTA-ATTCATAG
123 AAAATTTTTAAAATTCATCAAATATCATCA-TTAGATTCACAG
* **
89429 TAAATCAGTTTTGAAATATTCATTTATTTTCATGAGTTTTTCATTTTGTCCTTAAAATTTTCCTA
1 TAAATCAGTTTTGAAA-ATTCATTTATTTTCATGAGTTTTTCATTTTTTCCTTAAAATCATCCTA
* ** * * *
89494 TTCTTGAAAACTAAGTTTTTTATTCTATAAATGTTTTTGAGGAAATTTTTCTAGGTTTAAAATTT
65 TTCTTGAAAAATAAGTTTGCTATTCTATAAATGTTTTCGAGGAAAGTTTTCTAGGTTCAAAATTT
* * *
89559 TTAAAATTCATCTAATATTATCATTAGATTCACAT
130 TTAAAATTCATCAAATATCATCATTAGATTCACAG
89594 TAAATCAGTTTTGCAAAATTCAATTTATTTT-ATGAGTTTTGT-ATTTTTT
1 TAAATCAGTTTTG-AAAATTC-ATTTATTTTCATGAGTTTT-TCATTTTTT
89643 TCATAAGATA
Statistics
Matches: 181, Mismatches: 22, Indels: 23
0.80 0.10 0.10
Matches are distributed among these distances:
164 7 0.04
165 101 0.56
166 68 0.38
167 5 0.03
ACGTcount: A:0.30, C:0.12, G:0.09, T:0.49
Consensus pattern (164 bp):
TAAATCAGTTTTGAAAATTCATTTATTTTCATGAGTTTTTCATTTTTTCCTTAAAATCATCCTAT
TCTTGAAAAATAAGTTTGCTATTCTATAAATGTTTTCGAGGAAAGTTTTCTAGGTTCAAAATTTT
TAAAATTCATCAAATATCATCATTAGATTCACAG
Found at i:93546 original size:11 final size:12
Alignment explanation
Indices: 93530--93580 Score: 59
Period size: 13 Copynumber: 4.2 Consensus size: 12
93520 AGGTTAAACT
93530 AAAAAAAGAGA-
1 AAAAAAAGAGAG
*
93541 AAAAAAAAAGAG
1 AAAAAAAGAGAG
*
93553 AGAAAAAAGGGAG
1 A-AAAAAAGAGAG
93566 AAAGAAAAGAGAG
1 AAA-AAAAGAGAG
93579 AA
1 AA
93581 GAAATAGAAA
Statistics
Matches: 33, Mismatches: 4, Indels: 4
0.80 0.10 0.10
Matches are distributed among these distances:
11 10 0.30
12 3 0.09
13 20 0.61
ACGTcount: A:0.75, C:0.00, G:0.25, T:0.00
Consensus pattern (12 bp):
AAAAAAAGAGAG
Found at i:93554 original size:15 final size:14
Alignment explanation
Indices: 93530--93560 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 14
93520 AGGTTAAACT
93530 AAAAAAAGAGAAAA
1 AAAAAAAGAGAAAA
93544 AAAAAAGAGAGAAAA
1 AAAAAA-AGAGAAAA
93559 AA
1 AA
93561 GGGAGAAAGA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 6 0.38
15 10 0.62
ACGTcount: A:0.84, C:0.00, G:0.16, T:0.00
Consensus pattern (14 bp):
AAAAAAAGAGAAAA
Found at i:93573 original size:24 final size:24
Alignment explanation
Indices: 93531--93590 Score: 75
Period size: 24 Copynumber: 2.5 Consensus size: 24
93521 GGTTAAACTA
93531 AAAAAAGAGAAAAAAAAAAGAGAG
1 AAAAAAGAGAAAAAAAAAAGAGAG
* * *
93555 AAAAAAGGGAGAAAGAAAAGAGAG
1 AAAAAAGAGAAAAAAAAAAGAGAG
* *
93579 AAGAAATAGAAA
1 AAAAAAGAGAAA
93591 CAAAGAGGTA
Statistics
Matches: 29, Mismatches: 7, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
24 29 1.00
ACGTcount: A:0.73, C:0.00, G:0.25, T:0.02
Consensus pattern (24 bp):
AAAAAAGAGAAAAAAAAAAGAGAG
Found at i:95449 original size:97 final size:97
Alignment explanation
Indices: 95280--95974 Score: 1005
Period size: 97 Copynumber: 7.3 Consensus size: 97
95270 AAAATTTTAT
* * * *
95280 TTATCGGGGACAGTCTAACCCTATTCCTCCGAAGGGATACTCCAACCCCGCTTTTAAACACATCA
1 TTATCGGGGACACTCCAACCCCATTCCTCCGAGGGGATACTCCAACCCCGCTTTTAAACACATCA
*
95345 AAGTTTAAATCTTCTTCTCACTTAAATTGTCA
66 AAGTTTAAATCTTATTCTCACTTAAATTGTCA
* *
95377 TTATCGGGGACACTCCAACCCCATTCCTCCGAGGGGATACTCCAACCCCGCTTTTAAACAAATTA
1 TTATCGGGGACACTCCAACCCCATTCCTCCGAGGGGATACTCCAACCCCGCTTTTAAACACATCA
* *
95442 AAATTTAAATCTTATTCTCACTTAAATTATCA
66 AAGTTTAAATCTTATTCTCACTTAAATTGTCA
* * * * * *
95474 TCATCGGGGACACTCCAACCCCATTCCTCCGAGGAGATAGTCAAACCTCGCTTTTAAATACATCA
1 TTATCGGGGACACTCCAACCCCATTCCTCCGAGGGGATACTCCAACCCCGCTTTTAAACACATCA
95539 AAGTTTAAATCTTATTCTCACTTAAATTG---
66 AAGTTTAAATCTTATTCTCACTTAAATTGTCA
* * * *
95568 TTATTGGGAACACTCCAACCCCATTCCTCCGAGGGGATACTCCAACCCCGCTTTTAAACAAATTA
1 TTATCGGGGACACTCCAACCCCATTCCTCCGAGGGGATACTCCAACCCCGCTTTTAAACACATCA
* *
95633 AAATTTAAATCTTATTCTCACTTAAATTATCA
66 AAGTTTAAATCTTATTCTCACTTAAATTGTCA
* * * * * *
95665 TCATCGGGGACACTCCAACCCCATTCCTCCGAGGAGATAGTCAAACCTCGCTTTTAAATACATCA
1 TTATCGGGGACACTCCAACCCCATTCCTCCGAGGGGATACTCCAACCCCGCTTTTAAACACATCA
95730 AAGTTTAAATCTTATTCTCACTTAAATTG---
66 AAGTTTAAATCTTATTCTCACTTAAATTGTCA
*
95759 TTATTGGGGACACTCCAACCCCATTCCTCCG-GGAGGATACTCCAACCCCGCTTTTAAACACATC
1 TTATCGGGGACACTCCAACCCCATTCCTCCGAGG-GGATACTCCAACCCCGCTTTTAAACACATC
95823 AAAGTTTAAATCTTATTCTCACTTAAATTGTCA
65 AAAGTTTAAATCTTATTCTCACTTAAATTGTCA
* * * * *
95856 TCATCAGGGACACTCCAACCCCATTCCTCTGAGGGGATACTCAAACCTCGCTTTTAAACACATCA
1 TTATCGGGGACACTCCAACCCCATTCCTCCGAGGGGATACTCCAACCCCGCTTTTAAACACATCA
95921 AAGTTTAAATCTTATTCTCACTTAAATTG---
66 AAGTTTAAATCTTATTCTCACTTAAATTGTCA
*
95950 TTATCGAGGACACTCCAACCCCATT
1 TTATCGGGGACACTCCAACCCCATT
95975 TCTCTGATAC
Statistics
Matches: 531, Mismatches: 59, Indels: 19
0.87 0.10 0.03
Matches are distributed among these distances:
93 2 0.00
94 188 0.35
97 339 0.64
98 2 0.00
ACGTcount: A:0.31, C:0.28, G:0.12, T:0.30
Consensus pattern (97 bp):
TTATCGGGGACACTCCAACCCCATTCCTCCGAGGGGATACTCCAACCCCGCTTTTAAACACATCA
AAGTTTAAATCTTATTCTCACTTAAATTGTCA
Found at i:95641 original size:191 final size:191
Alignment explanation
Indices: 95282--95974 Score: 1138
Period size: 191 Copynumber: 3.6 Consensus size: 191
95272 AATTTTATTT
* * * * *
95282 ATCGGGGACAGTCTAACCCTATTCCTCCGAAGG-GATACTCCAACCCCGCTTTTAAACACATCAA
1 ATCGGGGACACTCCAACCCCATTCCTCCG-AGGAGATACTCAAACCTCGCTTTTAAACACATCAA
*
95346 AGTTTAAATCTTCTTCTCACTTAAATTGTCATTATCGGGGACACTCCAACCCCATTCCTCCGAGG
65 AGTTTAAATCTTATTCTCACTTAAATTG---TTATCGGGGACACTCCAACCCCATTCCTCCGAGG
95411 GGATACTCCAACCCCGCTTTTAAACAAATTAAAATTTAAATCTTATTCTCACTTAAATTATCATC
127 GGATACTCCAACCCCGCTTTTAAACAAATTAAAATTTAAATCTTATTCTCACTTAAATTATCATC
* *
95476 ATCGGGGACACTCCAACCCCATTCCTCCGAGGAGATAGTCAAACCTCGCTTTTAAATACATCAAA
1 ATCGGGGACACTCCAACCCCATTCCTCCGAGGAGATACTCAAACCTCGCTTTTAAACACATCAAA
* *
95541 GTTTAAATCTTATTCTCACTTAAATTGTTATTGGGAACACTCCAACCCCATTCCTCCGAGGGGAT
66 GTTTAAATCTTATTCTCACTTAAATTGTTATCGGGGACACTCCAACCCCATTCCTCCGAGGGGAT
95606 ACTCCAACCCCGCTTTTAAACAAATTAAAATTTAAATCTTATTCTCACTTAAATTATCATC
131 ACTCCAACCCCGCTTTTAAACAAATTAAAATTTAAATCTTATTCTCACTTAAATTATCATC
* *
95667 ATCGGGGACACTCCAACCCCATTCCTCCGAGGAGATAGTCAAACCTCGCTTTTAAATACATCAAA
1 ATCGGGGACACTCCAACCCCATTCCTCCGAGGAGATACTCAAACCTCGCTTTTAAACACATCAAA
*
95732 GTTTAAATCTTATTCTCACTTAAATTGTTATTGGGGACACTCCAACCCCATTCCTCCG-GGAGGA
66 GTTTAAATCTTATTCTCACTTAAATTGTTATCGGGGACACTCCAACCCCATTCCTCCGAGG-GGA
* * * *
95796 TACTCCAACCCCGCTTTTAAACACATCAAAGTTTAAATCTTATTCTCACTTAAATTGTCATC
130 TACTCCAACCCCGCTTTTAAACAAATTAAAATTTAAATCTTATTCTCACTTAAATTATCATC
* * *
95858 ATCAGGGACACTCCAACCCCATTCCTCTGAGGGGATACTCAAACCTCGCTTTTAAACACATCAAA
1 ATCGGGGACACTCCAACCCCATTCCTCCGAGGAGATACTCAAACCTCGCTTTTAAACACATCAAA
*
95923 GTTTAAATCTTATTCTCACTTAAATTGTTATCGAGGACACTCCAACCCCATT
66 GTTTAAATCTTATTCTCACTTAAATTGTTATCGGGGACACTCCAACCCCATT
95975 TCTCTGATAC
Statistics
Matches: 475, Mismatches: 22, Indels: 7
0.94 0.04 0.01
Matches are distributed among these distances:
190 2 0.00
191 390 0.82
193 3 0.01
194 80 0.17
ACGTcount: A:0.31, C:0.28, G:0.12, T:0.30
Consensus pattern (191 bp):
ATCGGGGACACTCCAACCCCATTCCTCCGAGGAGATACTCAAACCTCGCTTTTAAACACATCAAA
GTTTAAATCTTATTCTCACTTAAATTGTTATCGGGGACACTCCAACCCCATTCCTCCGAGGGGAT
ACTCCAACCCCGCTTTTAAACAAATTAAAATTTAAATCTTATTCTCACTTAAATTATCATC
Found at i:95871 original size:288 final size:285
Alignment explanation
Indices: 95286--95974 Score: 1010
Period size: 288 Copynumber: 2.4 Consensus size: 285
95276 TTATTTATCG
* * * *
95286 GGGACAGTCTAACCCTATTCCTCCGAAGGGATACTCCAACCCCGCTTTTAAACACATCAAAGTTT
1 GGGACACTCCAACCCCATTCCTCCGAGGGGATACTCCAACCCCGCTTTTAAACACATCAAAGTTT
* *
95351 AAATCTTCTTCTCACTTAAATTGTCATTATCGGGGACACTCCAACCCCATTCCTCCGAGGGGATA
66 AAATCTTATTCTCACTTAAATTGTCA-TATCGGGGACACTCCAACCCCATTCCTCCGAGGAGATA
* *
95416 CTCCAACCCCGCTTTTAAACAAATTAAAATTTAAATCTTATTCTCACTTAAATTATCATCATCGG
130 CTCAAACCCCGCTTTTAAACAAATCAAAATTTAAATCTTATTCTCACTTAAATTAT-ATCATCGG
* * *
95481 GGACACTCCAACCCCATTCCTCCGAGGAGATAGTCAAACCTCGCTTTTAAATACATCAAAGTTTA
194 GGACACTCCAACCCCATTCCTCCGAGGAGATACTCAAACCCCGCTTTTAAACACATCAAAGTTTA
*
95546 AATCTTATTCTCACTTAAATTGTTATT
259 AATCTTATTCTCACTTAAATTGTTATA
* * *
95573 GGGAACACTCCAACCCCATTCCTCCGAGGGGATACTCCAACCCCGCTTTTAAACAAATTAAAATT
1 GGG-ACACTCCAACCCCATTCCTCCGAGGGGATACTCCAACCCCGCTTTTAAACACATCAAAGTT
*
95638 TAAATCTTATTCTCACTTAAATTATCATCATCGGGGACACTCCAACCCCATTCCTCCGAGGAGAT
65 TAAATCTTATTCTCACTTAAATTGTCAT-ATCGGGGACACTCCAACCCCATTCCTCCGAGGAGAT
* * * * * * *
95703 AGTCAAACCTCGCTTTTAAATACATCAAAGTTTAAATCTTATTCTCACTTAAATTGT-T-ATTGG
129 ACTCAAACCCCGCTTTTAAACAAATCAAAATTTAAATCTTATTCTCACTTAAATTATATCATCGG
*
95766 GGACACTCCAACCCCATTCCTCCG-GGAGGATACTCCAACCCCGCTTTTAAACACATCAAAGTTT
194 GGACACTCCAACCCCATTCCTCCGAGGA-GATACTCAAACCCCGCTTTTAAACACATCAAAGTTT
95830 AAATCTTATTCTCACTTAAATTGTCATCATCA
258 AAATCTTATTCTCACTTAAATTGT--T-AT-A
* * *
95862 GGGACACTCCAACCCCATTCCTCTGAGGGGATACTCAAACCTCGCTTTTAAACACATCAAAGTTT
1 GGGACACTCCAACCCCATTCCTCCGAGGGGATACTCCAACCCCGCTTTTAAACACATCAAAGTTT
*
95927 AAATCTTATTCTCACTTAAATTGT--TATCGAGGACACTCCAACCCCATT
66 AAATCTTATTCTCACTTAAATTGTCATATCGGGGACACTCCAACCCCATT
95975 TCTCTGATAC
Statistics
Matches: 363, Mismatches: 32, Indels: 16
0.88 0.08 0.04
Matches are distributed among these distances:
284 3 0.01
285 106 0.29
286 2 0.01
287 5 0.01
288 244 0.67
289 3 0.01
ACGTcount: A:0.31, C:0.28, G:0.12, T:0.30
Consensus pattern (285 bp):
GGGACACTCCAACCCCATTCCTCCGAGGGGATACTCCAACCCCGCTTTTAAACACATCAAAGTTT
AAATCTTATTCTCACTTAAATTGTCATATCGGGGACACTCCAACCCCATTCCTCCGAGGAGATAC
TCAAACCCCGCTTTTAAACAAATCAAAATTTAAATCTTATTCTCACTTAAATTATATCATCGGGG
ACACTCCAACCCCATTCCTCCGAGGAGATACTCAAACCCCGCTTTTAAACACATCAAAGTTTAAA
TCTTATTCTCACTTAAATTGTTATA
Found at i:106024 original size:20 final size:20
Alignment explanation
Indices: 106001--106077 Score: 93
Period size: 20 Copynumber: 3.9 Consensus size: 20
105991 AAGTACCTAG
106001 ATGTATCGATACATTCTTCA
1 ATGTATCGATACATTCTTCA
* *
106021 ATGTATCGATACATGT-ATGA
1 ATGTATCGATACAT-TCTTCA
* *
106041 ATCTATCGATACATTCTCCA
1 ATGTATCGATACATTCTTCA
*
106061 ATGTATCAATACATTCT
1 ATGTATCGATACATTCT
106078 ATCTTTTTAC
Statistics
Matches: 47, Mismatches: 8, Indels: 4
0.80 0.14 0.07
Matches are distributed among these distances:
19 1 0.02
20 45 0.96
21 1 0.02
ACGTcount: A:0.32, C:0.19, G:0.10, T:0.38
Consensus pattern (20 bp):
ATGTATCGATACATTCTTCA
Found at i:106114 original size:51 final size:51
Alignment explanation
Indices: 106044--106176 Score: 203
Period size: 51 Copynumber: 2.6 Consensus size: 51
106034 TGTATGAATC
* * * *
106044 TATCGATACATTCTCCAATGTATCAATACATTCTATCTTTTTACCTATATG
1 TATCGATACATTCTTCAATGTATCGATACATTCTATCTTTTTACCCAGATG
* * *
106095 TATCAATATATTCTTCAATGTATCGATACATTCTGTCTTTTTACCCAGATG
1 TATCGATACATTCTTCAATGTATCGATACATTCTATCTTTTTACCCAGATG
106146 TATCGATACATTCTTCAATGTATCGATACAT
1 TATCGATACATTCTTCAATGTATCGATACAT
106177 GTATGAATGT
Statistics
Matches: 73, Mismatches: 9, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
51 73 1.00
ACGTcount: A:0.29, C:0.20, G:0.08, T:0.42
Consensus pattern (51 bp):
TATCGATACATTCTTCAATGTATCGATACATTCTATCTTTTTACCCAGATG
Found at i:106168 original size:20 final size:20
Alignment explanation
Indices: 106143--106196 Score: 74
Period size: 20 Copynumber: 2.7 Consensus size: 20
106133 TTTTACCCAG
*
106143 ATGTATCGATACAT-TCTTCA
1 ATGTATCGATACATGT-ATCA
*
106163 ATGTATCGATACATGTATGA
1 ATGTATCGATACATGTATCA
106183 ATGTATCGATACAT
1 ATGTATCGATACAT
106197 CTAGTTAAAA
Statistics
Matches: 31, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
20 30 0.97
21 1 0.03
ACGTcount: A:0.33, C:0.15, G:0.15, T:0.37
Consensus pattern (20 bp):
ATGTATCGATACATGTATCA
Found at i:118745 original size:13 final size:13
Alignment explanation
Indices: 118727--118753 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
118717 TAAAGACTGG
118727 CATGAAAAGCTAT
1 CATGAAAAGCTAT
118740 CATGAAAAGCTAT
1 CATGAAAAGCTAT
118753 C
1 C
118754 TTTTGCGCGT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.44, C:0.19, G:0.15, T:0.22
Consensus pattern (13 bp):
CATGAAAAGCTAT
Found at i:119268 original size:1 final size:1
Alignment explanation
Indices: 119262--119351 Score: 63
Period size: 1 Copynumber: 90.0 Consensus size: 1
119252 CTTTACACCG
* * * ** * * **
119262 AAAAAAACAAAAAAAATAGAAAAAAACCAAAAAAAACAAAAAAAAAAACAAAAAAAAAAAAACCA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
* ** *
119327 AGAAAAAAAAGCAAAAAAACAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAA
119352 GGGGTCTAGA
Statistics
Matches: 68, Mismatches: 21, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
1 68 1.00
ACGTcount: A:0.86, C:0.10, G:0.03, T:0.01
Consensus pattern (1 bp):
A
Found at i:119297 original size:13 final size:13
Alignment explanation
Indices: 119290--119350 Score: 70
Period size: 13 Copynumber: 4.6 Consensus size: 13
119280 GAAAAAAACC
119290 AAAAAAAA-CAAA
1 AAAAAAAACCAAA
*
119302 AAAAAAAACAAAAA
1 AAAAAAAAC-CAAA
*
119316 AAAAAAAACCAAG
1 AAAAAAAACCAAA
*
119329 AAAAAAAAGCAAA
1 AAAAAAAACCAAA
119342 AAAACAAAA
1 AAAA-AAAA
119351 AGGGGTCTAG
Statistics
Matches: 41, Mismatches: 5, Indels: 4
0.82 0.10 0.08
Matches are distributed among these distances:
12 8 0.20
13 17 0.41
14 16 0.39
ACGTcount: A:0.87, C:0.10, G:0.03, T:0.00
Consensus pattern (13 bp):
AAAAAAAACCAAA
Found at i:119321 original size:36 final size:36
Alignment explanation
Indices: 119262--119351 Score: 112
Period size: 36 Copynumber: 2.5 Consensus size: 36
119252 CTTTACACCG
* * *
119262 AAAAAAACAAAAA-AAATAGAAAAAAACCAA-AAAA
1 AAAAAAAAAAAAACAAAAAAAAAAAAACCAAGAAAA
119296 AACAAAAAAAAAAACAAAAAAAAAAAAACCAAGAAAA
1 AA-AAAAAAAAAAACAAAAAAAAAAAAACCAAGAAAA
**
119333 AAAAGCAAAAAAACAAAAA
1 AAAAAAAAAAAAACAAAAA
119352 GGGGTCTAGA
Statistics
Matches: 48, Mismatches: 5, Indels: 4
0.84 0.09 0.07
Matches are distributed among these distances:
34 2 0.04
35 10 0.21
36 30 0.62
37 6 0.12
ACGTcount: A:0.86, C:0.10, G:0.03, T:0.01
Consensus pattern (36 bp):
AAAAAAAAAAAAACAAAAAAAAAAAAACCAAGAAAA
Found at i:120164 original size:33 final size:33
Alignment explanation
Indices: 120102--120170 Score: 95
Period size: 33 Copynumber: 2.1 Consensus size: 33
120092 CCATTACAAG
* *
120102 CAATGTATCGATACAATTCATCATCTATCGATA
1 CAATGTATCGATACAATTCACCATATATCGATA
*
120135 CAATGTATCGATAC-ATTGTACCATATATCGATA
1 CAATGTATCGATACAATT-CACCATATATCGATA
120168 CAA
1 CAA
120171 ATAGTGGTAG
Statistics
Matches: 32, Mismatches: 3, Indels: 2
0.86 0.08 0.05
Matches are distributed among these distances:
32 3 0.09
33 29 0.91
ACGTcount: A:0.38, C:0.20, G:0.10, T:0.32
Consensus pattern (33 bp):
CAATGTATCGATACAATTCACCATATATCGATA
Found at i:120243 original size:19 final size:19
Alignment explanation
Indices: 120199--120271 Score: 85
Period size: 20 Copynumber: 3.7 Consensus size: 19
120189 TTGCTAGTTT
**
120199 CATGTATCGATACAATTGCC
1 CATGTATCGATACAA-TGAA
120219 CATGTATCGATACAATGAA
1 CATGTATCGATACAATGAA
*
120238 CATGTATCGATACAAAGCATA
1 CATGTATCGATACAATG-A-A
120259 -ATGTATCGATACA
1 CATGTATCGATACA
120272 TATGGGTGAG
Statistics
Matches: 48, Mismatches: 3, Indels: 4
0.87 0.05 0.07
Matches are distributed among these distances:
19 18 0.38
20 29 0.60
21 1 0.02
ACGTcount: A:0.38, C:0.19, G:0.15, T:0.27
Consensus pattern (19 bp):
CATGTATCGATACAATGAA
Found at i:120823 original size:22 final size:22
Alignment explanation
Indices: 120796--120902 Score: 124
Period size: 22 Copynumber: 4.9 Consensus size: 22
120786 AGTTTTCATT
* *
120796 TTTCTCCCCCTTAATTAAAGAA
1 TTTCTCCCCCTTAGTCAAAGAA
* *
120818 TTTCTCCCCCTTAGTCAATGCA
1 TTTCTCCCCCTTAGTCAAAGAA
* *
120840 TTTCTCCTCATTAGTCAAAGAA
1 TTTCTCCCCCTTAGTCAAAGAA
* *
120862 TTTCTCCCCTTTAGTCAAAGCA
1 TTTCTCCCCCTTAGTCAAAGAA
* *
120884 TTTCTCCCCTTTTGTCAAA
1 TTTCTCCCCCTTAGTCAAA
120903 TCAAAAAAAA
Statistics
Matches: 73, Mismatches: 12, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 73 1.00
ACGTcount: A:0.24, C:0.30, G:0.07, T:0.38
Consensus pattern (22 bp):
TTTCTCCCCCTTAGTCAAAGAA
Found at i:120901 original size:44 final size:44
Alignment explanation
Indices: 120796--120902 Score: 142
Period size: 44 Copynumber: 2.4 Consensus size: 44
120786 AGTTTTCATT
* * * *
120796 TTTCTCCCCCTTAATTAAAGAATTTCTCCCCCTTAGTCAATGCA
1 TTTCTCCCCATTAGTCAAAGAATTTCTCCCCCTTAGTCAAAGCA
* *
120840 TTTCTCCTCATTAGTCAAAGAATTTCTCCCCTTTAGTCAAAGCA
1 TTTCTCCCCATTAGTCAAAGAATTTCTCCCCCTTAGTCAAAGCA
* *
120884 TTTCTCCCCTTTTGTCAAA
1 TTTCTCCCCATTAGTCAAA
120903 TCAAAAAAAA
Statistics
Matches: 54, Mismatches: 9, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
44 54 1.00
ACGTcount: A:0.24, C:0.30, G:0.07, T:0.38
Consensus pattern (44 bp):
TTTCTCCCCATTAGTCAAAGAATTTCTCCCCCTTAGTCAAAGCA
Found at i:127532 original size:52 final size:52
Alignment explanation
Indices: 127475--127590 Score: 214
Period size: 52 Copynumber: 2.2 Consensus size: 52
127465 TACAATTCAT
* *
127475 AATGTATGGATACATTGATTTGAAATTATAGCCGTTTATAGCCGTTACAAGC
1 AATGTATCGATACATTGATTTGAAATTATAGCCATTTATAGCCGTTACAAGC
127527 AATGTATCGATACATTGATTTGAAATTATAGCCATTTATAGCCGTTACAAGC
1 AATGTATCGATACATTGATTTGAAATTATAGCCATTTATAGCCGTTACAAGC
127579 AATGTATCGATA
1 AATGTATCGATA
127591 TAATTCATCA
Statistics
Matches: 62, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
52 62 1.00
ACGTcount: A:0.34, C:0.14, G:0.17, T:0.34
Consensus pattern (52 bp):
AATGTATCGATACATTGATTTGAAATTATAGCCATTTATAGCCGTTACAAGC
Found at i:127618 original size:13 final size:13
Alignment explanation
Indices: 127600--127630 Score: 53
Period size: 13 Copynumber: 2.4 Consensus size: 13
127590 ATAATTCATC
127600 ATGTATCGATACA
1 ATGTATCGATACA
127613 ATGTATCGATACA
1 ATGTATCGATACA
*
127626 TTGTA
1 ATGTA
127631 CCATGTATTG
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 17 1.00
ACGTcount: A:0.35, C:0.13, G:0.16, T:0.35
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:127723 original size:19 final size:20
Alignment explanation
Indices: 127699--127747 Score: 64
Period size: 19 Copynumber: 2.5 Consensus size: 20
127689 ATTGCCCATG
*
127699 TATCGATACAATGAAT-ATA
1 TATCGATACAAAGAATAATA
* *
127718 TATCGATACAAAGCATAATT
1 TATCGATACAAAGAATAATA
127738 TATCGATACA
1 TATCGATACA
127748 TCTGGGTGAG
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
19 14 0.54
20 12 0.46
ACGTcount: A:0.45, C:0.14, G:0.10, T:0.31
Consensus pattern (20 bp):
TATCGATACAAAGAATAATA
Found at i:129275 original size:28 final size:28
Alignment explanation
Indices: 129233--130161 Score: 1040
Period size: 28 Copynumber: 32.6 Consensus size: 28
129223 AACGTTTATC
*
129233 TCTTTTCAAAGCCCACAAGTTAGTGGCA
1 TCTTTTCAAAGCCCACAAGTCAGTGGCA
*
129261 TATTTTCAAAGCCCACAAGTCAGTGGCA
1 TCTTTTCAAAGCCCACAAGTCAGTGGCA
129289 CTCTTTTCAAAGCCCACAAGTCAGTGGCA
1 -TCTTTTCAAAGCCCACAAGTCAGTGGCA
* * * *
129318 TCCTTTCAAAACCCATAAGTCGGTGGCA
1 TCTTTTCAAAGCCCACAAGTCAGTGGCA
* * *
129346 CCTTTTCGAAGCCCACAAGTCAGTGGTA
1 TCTTTTCAAAGCCCACAAGTCAGTGGCA
* *
129374 TCCTTTCAAAGCCCATAAGTCAGTGGCA
1 TCTTTTCAAAGCCCACAAGTCAGTGGCA
* * *
129402 CCCTTTCAAAGCCAACAAGTCAGTGGCA
1 TCTTTTCAAAGCCCACAAGTCAGTGGCA
* * *
129430 CTCTTTTCAGAG-ACACAAGTTAGTGGCA
1 -TCTTTTCAAAGCCCACAAGTCAGTGGCA
* * * * *
129458 TCCTTTCAAAGCCCATAAGTTAGTAGCG
1 TCTTTTCAAAGCCCACAAGTCAGTGGCA
* * *
129486 TCCTTTCAAAGCCCACAAGCCATTGGCA
1 TCTTTTCAAAGCCCACAAGTCAGTGGCA
* * *
129514 CTCTTTTGAAAGCCCACAAATCAGTAGCA
1 -TCTTTTCAAAGCCCACAAGTCAGTGGCA
* *
129543 T-TCTTTCAAAACCCACAAGTTAGTGGCA
1 TCT-TTTCAAAGCCCACAAGTCAGTGGCA
129571 CTCTTTTCAAAGCCCACAAGTCAGTGGCA
1 -TCTTTTCAAAGCCCACAAGTCAGTGGCA
* * *
129600 CTCTTTTGAAAGCCCATAAGTTAGTGGCA
1 -TCTTTTCAAAGCCCACAAGTCAGTGGCA
* *
129629 CTCTTTTCCAAGCCCACAAGTCAGCGGCA
1 -TCTTTTCAAAGCCCACAAGTCAGTGGCA
*
129658 CTCTTTTCAAAGCCCACAAGTTAGTGGCA
1 -TCTTTTCAAAGCCCACAAGTCAGTGGCA
*
129687 TCTTTTCAAAGCCCACAAGTTAGTGGCA
1 TCTTTTCAAAGCCCACAAGTCAGTGGCA
129715 CTCTTTTCAAAGCCCACAAGTCAGTGGCA
1 -TCTTTTCAAAGCCCACAAGTCAGTGGCA
*
129744 TCCTTTCAAAGCCCACAAGTCAGTGGCA
1 TCTTTTCAAAGCCCACAAGTCAGTGGCA
* * * *
129772 CCCTTTCAAAGCCAACAAGTTAGTGGCA
1 TCTTTTCAAAGCCCACAAGTCAGTGGCA
* *
129800 CTCTTTTCAAAGCCCATAAGTCAGTGGTA
1 -TCTTTTCAAAGCCCACAAGTCAGTGGCA
129829 TCCTTTT-AAAGCCCACAAGTCAGTGGCA
1 T-CTTTTCAAAGCCCACAAGTCAGTGGCA
* *
129857 TGC-TTTCGAAGCCCACAAGTCACT-GCA
1 T-CTTTTCAAAGCCCACAAGTCAGTGGCA
* * *
129884 CTCTTTTCAAAGCCCATAAGTTAGTAGCA
1 -TCTTTTCAAAGCCCACAAGTCAGTGGCA
129913 TCTTTTCAAAGCCCACAAGTCAGTGGCA
1 TCTTTTCAAAGCCCACAAGTCAGTGGCA
*
129941 CTCTTTTCAAAGACCACAAGTCAGTGGCA
1 -TCTTTTCAAAGCCCACAAGTCAGTGGCA
* *
129970 TCCTTTCAAAGCCTACAAGTCAGTGGCA
1 TCTTTTCAAAGCCCACAAGTCAGTGGCA
* * * *
129998 CCTTTTCAAAGCCCATAAGTTAGTGCCA
1 TCTTTTCAAAGCCCACAAGTCAGTGGCA
* * *
130026 TCCTTTCAAAACCCACAAGTTAGTGGCA
1 TCTTTTCAAAGCCCACAAGTCAGTGGCA
* * *
130054 TCCTTTCAAAGCCCACAAGTTAGTAGCA
1 TCTTTTCAAAGCCCACAAGTCAGTGGCA
* * * *
130082 CCCTTTCAAAGCCCACAAGCCAGTGGTAA
1 TCTTTTCAAAGCCCACAAGTCAGTGG-CA
*
130111 TTCTTTTCAAAGCCCACACGAGTAAGTGGCA
1 -TCTTTTCAAAGCCCACA--AGTCAGTGGCA
130142 GCTCTTTTCAAAGCCCACAA
1 --TCTTTTCAAAGCCCACAA
130162 AAGTTAATGG
Statistics
Matches: 766, Mismatches: 115, Indels: 38
0.83 0.13 0.04
Matches are distributed among these distances:
27 17 0.02
28 465 0.61
29 242 0.32
30 17 0.02
31 1 0.00
32 24 0.03
ACGTcount: A:0.29, C:0.29, G:0.17, T:0.25
Consensus pattern (28 bp):
TCTTTTCAAAGCCCACAAGTCAGTGGCA
Found at i:129325 original size:57 final size:57
Alignment explanation
Indices: 129232--130161 Score: 1042
Period size: 57 Copynumber: 16.3 Consensus size: 57
129222 GAACGTTTAT
* ** *
129232 CTCTTTTCAAAGCCCACAAGTTAGTGGCATATTTTCAAAGCCCACAAGTCAGTGGCA
1 CTCTTTTCAAAGCCCACAAGTCAGTGGCATCCTTTCAAAGCCCACAAGTTAGTGGCA
* * **
129289 CTCTTTTCAAAGCCCACAAGTCAGTGGCATCCTTTCAAAACCCATAAGTCGGTGGCA
1 CTCTTTTCAAAGCCCACAAGTCAGTGGCATCCTTTCAAAGCCCACAAGTTAGTGGCA
* * * *
129346 C-CTTTTCGAAGCCCACAAGTCAGTGGTATCCTTTCAAAGCCCATAAGTCAGTGGCA
1 CTCTTTTCAAAGCCCACAAGTCAGTGGCATCCTTTCAAAGCCCACAAGTTAGTGGCA
* * * * *
129402 C-CCTTTCAAAGCCAACAAGTCAGTGGCACTCTTTTCAGAG-ACACAAGTTAGTGGCA
1 CTCTTTTCAAAGCCCACAAGTCAGTGGCA-TCCTTTCAAAGCCCACAAGTTAGTGGCA
* * * * * ** *
129458 -TCCTTTCAAAGCCCATAAGTTAGTAGCGTCCTTTCAAAGCCCACAAGCCATTGGCA
1 CTCTTTTCAAAGCCCACAAGTCAGTGGCATCCTTTCAAAGCCCACAAGTTAGTGGCA
* * * * *
129514 CTCTTTTGAAAGCCCACAAATCAGTAGCATTCTTTCAAAACCCACAAGTTAGTGGCA
1 CTCTTTTCAAAGCCCACAAGTCAGTGGCATCCTTTCAAAGCCCACAAGTTAGTGGCA
* * *
129571 CTCTTTTCAAAGCCCACAAGTCAGTGGCACTCTTTTGAAAGCCCATAAGTTAGTGGCA
1 CTCTTTTCAAAGCCCACAAGTCAGTGGCA-TCCTTTCAAAGCCCACAAGTTAGTGGCA
* * *
129629 CTCTTTTCCAAGCCCACAAGTCAGCGGCACTCTTTTCAAAGCCCACAAGTTAGTGGCA
1 CTCTTTTCAAAGCCCACAAGTCAGTGGCA-TCCTTTCAAAGCCCACAAGTTAGTGGCA
* * *
129687 -TCTTTTCAAAGCCCACAAGTTAGTGGCACTCTTTTCAAAGCCCACAAGTCAGTGGCA
1 CTCTTTTCAAAGCCCACAAGTCAGTGGCA-TCCTTTCAAAGCCCACAAGTTAGTGGCA
* * *
129744 -TCCTTTCAAAGCCCACAAGTCAGTGGCACCCTTTCAAAGCCAACAAGTTAGTGGCA
1 CTCTTTTCAAAGCCCACAAGTCAGTGGCATCCTTTCAAAGCCCACAAGTTAGTGGCA
* * * *
129800 CTCTTTTCAAAGCCCATAAGTCAGTGGTATCCTTTTAAAGCCCACAAGTCAGTGGCA
1 CTCTTTTCAAAGCCCACAAGTCAGTGGCATCCTTTCAAAGCCCACAAGTTAGTGGCA
* * * * *
129857 -TGC-TTTCGAAGCCCACAAGTCACT-GCACTCTTTTCAAAGCCCATAAGTTAGTAGCA
1 CT-CTTTTCAAAGCCCACAAGTCAGTGGCA-TCCTTTCAAAGCCCACAAGTTAGTGGCA
* * *
129913 -TCTTTTCAAAGCCCACAAGTCAGTGGCACTCTTTTCAAAGACCACAAGTCAGTGGCA
1 CTCTTTTCAAAGCCCACAAGTCAGTGGCA-TCCTTTCAAAGCCCACAAGTTAGTGGCA
* * * *
129970 -TCCTTTCAAAGCCTACAAGTCAGTGGCA-CCTTTTCAAAGCCCATAAGTTAGTGCCA
1 CTCTTTTCAAAGCCCACAAGTCAGTGGCATCC-TTTCAAAGCCCACAAGTTAGTGGCA
* * * *
130026 -TCCTTTCAAAACCCACAAGTTAGTGGCATCCTTTCAAAGCCCACAAGTTAGTAGCA
1 CTCTTTTCAAAGCCCACAAGTCAGTGGCATCCTTTCAAAGCCCACAAGTTAGTGGCA
* * * * *
130082 C-CCTTTCAAAGCCCACAAGCCAGTGGTAATTCTTTTCAAAGCCCACACGAGTAAGTGGCA
1 CTCTTTTCAAAGCCCACAAGTCAGTGG-CA-TCCTTTCAAAGCCCACA--AGTTAGTGGCA
130142 GCTCTTTTCAAAGCCCACAA
1 -CTCTTTTCAAAGCCCACAA
130162 AAGTTAATGG
Statistics
Matches: 748, Mismatches: 106, Indels: 33
0.84 0.12 0.04
Matches are distributed among these distances:
55 13 0.02
56 298 0.40
57 318 0.43
58 93 0.12
60 9 0.01
61 1 0.00
62 16 0.02
ACGTcount: A:0.29, C:0.29, G:0.17, T:0.25
Consensus pattern (57 bp):
CTCTTTTCAAAGCCCACAAGTCAGTGGCATCCTTTCAAAGCCCACAAGTTAGTGGCA
Found at i:130210 original size:37 final size:38
Alignment explanation
Indices: 130151--130222 Score: 92
Period size: 37 Copynumber: 1.9 Consensus size: 38
130141 AGCTCTTTTC
* *
130151 AAAGCCCACAAAAGTTAATGGC-ACCTTTTTTAAAAAA
1 AAAGCCCACAAAAGTCAATGGCAACCCTTTTTAAAAAA
** *
130188 AAAGCCCACGCAAGTCAGTGGCAACCCTTTTTAAA
1 AAAGCCCACAAAAGTCAATGGCAACCCTTTTTAAA
130223 TCACCACTGT
Statistics
Matches: 29, Mismatches: 5, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
37 18 0.62
38 11 0.38
ACGTcount: A:0.40, C:0.24, G:0.14, T:0.22
Consensus pattern (38 bp):
AAAGCCCACAAAAGTCAATGGCAACCCTTTTTAAAAAA
Found at i:131115 original size:51 final size:51
Alignment explanation
Indices: 131020--131166 Score: 231
Period size: 51 Copynumber: 2.8 Consensus size: 51
131010 TATGGAAAAG
* *
131020 TACCCAGATGTATCGATACATTCATTCTTCAATGTATCGATACATTCTGTTTTTT
1 TACCCAGATGTATCGAT--A--CATTCTTCAATGTATCGATACATTCTATCTTTT
131075 TACCCAGATGTATCGATACATTCTTCAATGTATCGATACATTCTATCTTTT
1 TACCCAGATGTATCGATACATTCTTCAATGTATCGATACATTCTATCTTTT
*
131126 TACCTAGATGTATCGATACATTCTTCAATGTATCGATACAT
1 TACCCAGATGTATCGATACATTCTTCAATGTATCGATACAT
131167 CTAGTTAAAA
Statistics
Matches: 89, Mismatches: 3, Indels: 4
0.93 0.03 0.04
Matches are distributed among these distances:
51 71 0.80
53 1 0.01
55 17 0.19
ACGTcount: A:0.28, C:0.20, G:0.11, T:0.41
Consensus pattern (51 bp):
TACCCAGATGTATCGATACATTCTTCAATGTATCGATACATTCTATCTTTT
Found at i:136325 original size:16 final size:16
Alignment explanation
Indices: 136306--136361 Score: 78
Period size: 17 Copynumber: 3.4 Consensus size: 16
136296 CATCCTTCTT
136306 AAAAAAACAAAAAACA
1 AAAAAAACAAAAAACA
136322 AAAAAAACAAAAAAACA
1 AAAAAAAC-AAAAAACA
136339 AAAAACAA-AAAAAACA
1 AAAAA-AACAAAAAACA
136355 CAAAAAA
1 -AAAAAA
136362 TGAGGGGTCC
Statistics
Matches: 37, Mismatches: 0, Indels: 6
0.86 0.00 0.14
Matches are distributed among these distances:
16 17 0.46
17 18 0.49
18 2 0.05
ACGTcount: A:0.88, C:0.12, G:0.00, T:0.00
Consensus pattern (16 bp):
AAAAAAACAAAAAACA
Found at i:136326 original size:9 final size:8
Alignment explanation
Indices: 136306--136361 Score: 71
Period size: 9 Copynumber: 6.9 Consensus size: 8
136296 CATCCTTCTT
136306 AAAAAAAC
1 AAAAAAAC
136314 -AAAAAAC
1 AAAAAAAC
136321 AAAAAAAAC
1 -AAAAAAAC
136330 AAAAAAAC
1 AAAAAAAC
136338 -AAAAAAC
1 AAAAAAAC
136345 AAAAAAAAC
1 -AAAAAAAC
136354 ACAAAAAA
1 A-AAAAAA
136362 TGAGGGGTCC
Statistics
Matches: 43, Mismatches: 0, Indels: 9
0.83 0.00 0.17
Matches are distributed among these distances:
7 14 0.33
8 9 0.21
9 20 0.47
ACGTcount: A:0.88, C:0.12, G:0.00, T:0.00
Consensus pattern (8 bp):
AAAAAAAC
Found at i:136333 original size:24 final size:24
Alignment explanation
Indices: 136306--136361 Score: 103
Period size: 24 Copynumber: 2.3 Consensus size: 24
136296 CATCCTTCTT
136306 AAAAAAACAAAAAACAAAAAAAAC
1 AAAAAAACAAAAAACAAAAAAAAC
136330 AAAAAAACAAAAAACAAAAAAAAC
1 AAAAAAACAAAAAACAAAAAAAAC
136354 ACAAAAAA
1 A-AAAAAA
136362 TGAGGGGTCC
Statistics
Matches: 31, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
24 25 0.81
25 6 0.19
ACGTcount: A:0.88, C:0.12, G:0.00, T:0.00
Consensus pattern (24 bp):
AAAAAAACAAAAAACAAAAAAAAC
Found at i:136359 original size:7 final size:7
Alignment explanation
Indices: 136307--136350 Score: 61
Period size: 7 Copynumber: 5.9 Consensus size: 7
136297 ATCCTTCTTA
136307 AAAAAAC
1 AAAAAAC
136314 AAAAAAC
1 AAAAAAC
136321 AAAAAAAAC
1 --AAAAAAC
136330 AAAAAAAC
1 -AAAAAAC
136338 AAAAAAC
1 AAAAAAC
136345 AAAAAA
1 AAAAAA
136351 AACACAAAAA
Statistics
Matches: 35, Mismatches: 0, Indels: 4
0.90 0.00 0.10
Matches are distributed among these distances:
7 20 0.57
8 8 0.23
9 7 0.20
ACGTcount: A:0.89, C:0.11, G:0.00, T:0.00
Consensus pattern (7 bp):
AAAAAAC
Found at i:137624 original size:25 final size:27
Alignment explanation
Indices: 137564--137625 Score: 83
Period size: 27 Copynumber: 2.4 Consensus size: 27
137554 CAAGAAATGG
*
137564 TTGTCAAGAATTTATCATCAAAAACTT
1 TTGTCAAGAATGTATCATCAAAAACTT
* *
137591 TTGTCAAGAATGT-TCATTAGAAAC-T
1 TTGTCAAGAATGTATCATCAAAAACTT
137616 TTGTCAAGAA
1 TTGTCAAGAA
137626 ATTTTTGCCT
Statistics
Matches: 32, Mismatches: 3, Indels: 2
0.86 0.08 0.05
Matches are distributed among these distances:
25 11 0.34
26 9 0.28
27 12 0.38
ACGTcount: A:0.39, C:0.13, G:0.13, T:0.35
Consensus pattern (27 bp):
TTGTCAAGAATGTATCATCAAAAACTT
Found at i:137677 original size:29 final size:29
Alignment explanation
Indices: 137633--138133 Score: 486
Period size: 29 Copynumber: 17.6 Consensus size: 29
137623 GAAATTTTTG
*
137633 CCTTTTTAAAGCCCACAAGTCAATGGCAT
1 CCTTTTAAAAGCCCACAAGTCAATGGCAT
* *
137662 CTTTTTAAAAGCCCACAAGTCCATGGCAT
1 CCTTTTAAAAGCCCACAAGTCAATGGCAT
* *
137691 CC-TTTCAAAGCCCACAAGTCAGTGGCAT
1 CCTTTTAAAAGCCCACAAGTCAATGGCAT
*
137719 CCTTTCAAAAGCCCACAAGTCAATGGCAT
1 CCTTTTAAAAGCCCACAAGTCAATGGCAT
* *
137748 CCTTTCAAAAGCCCACAAGTCAGTGGCAT
1 CCTTTTAAAAGCCCACAAGTCAATGGCAT
* *
137777 CCTTTGAAAAGCTCACAAGTCAATGGCAT
1 CCTTTTAAAAGCCCACAAGTCAATGGCAT
* *
137806 CCTTTCAAAAGCCCACAAGTCCATGGCAT
1 CCTTTTAAAAGCCCACAAGTCAATGGCAT
* * *
137835 CC-TTTCAAAGCCCACAAGTCTATGGCGT
1 CCTTTTAAAAGCCCACAAGTCAATGGCAT
* * ***
137863 CC-TTTCAAAGCCCATAAGTGGGTGGCAT
1 CCTTTTAAAAGCCCACAAGTCAATGGCAT
*
137891 CCTTTTAAAAGCCCATAAGTCAATGGCAT
1 CCTTTTAAAAGCCCACAAGTCAATGGCAT
* * * **
137920 CATTTCAAAAGCCTACAAGTCGGTGGCAT
1 CCTTTTAAAAGCCCACAAGTCAATGGCAT
* * * **
137949 -CTTTTTAATGCCCATAAGTCTGTGGCA-
1 CCTTTTAAAAGCCCACAAGTCAATGGCAT
* * *
137976 CC-TTTCAAAGCCCACAAGTTAGTGGCA-
1 CCTTTTAAAAGCCCACAAGTCAATGGCAT
* *
138003 -CTTTTCAAAAGCCAACAAGTCAGTGGCA-
1 CCTTTT-AAAAGCCCACAAGTCAATGGCAT
*
138031 CCTTTTAAAAGCCAACAAGTCAATGGCA-
1 CCTTTTAAAAGCCCACAAGTCAATGGCAT
*
138059 CATTTTCAAAAG-CCACCAAGTCAATGGCA-
1 CCTTTT-AAAAGCCCA-CAAGTCAATGGCAT
* * * * *
138088 CCTTTTCAAAGCCTACAAGTCAGTGACAAC
1 CCTTTTAAAAGCCCACAAGTCAATGGC-AT
*
138118 CCTTTTCAAAGCCCAC
1 CCTTTTAAAAGCCCAC
138134 CCAAGTTGGT
Statistics
Matches: 401, Mismatches: 60, Indels: 21
0.83 0.12 0.04
Matches are distributed among these distances:
26 1 0.00
27 23 0.06
28 154 0.38
29 208 0.52
30 15 0.04
ACGTcount: A:0.31, C:0.28, G:0.16, T:0.24
Consensus pattern (29 bp):
CCTTTTAAAAGCCCACAAGTCAATGGCAT
Found at i:137706 original size:57 final size:57
Alignment explanation
Indices: 137640--138112 Score: 523
Period size: 57 Copynumber: 8.3 Consensus size: 57
137630 TTGCCTTTTT
* *
137640 AAAGCCCACAAGTCAATGGCATCTTTTTAAAAGCCCACAAGTCCATGGCATCCTTTC
1 AAAGCCCACAAGTCAGTGGCATCTTTTTAAAAGCCCACAAGTCAATGGCATCCTTTC
* *
137697 AAAGCCCACAAGTCAGTGGCATCCTTTCAAAAGCCCACAAGTCAATGGCATCCTTTC
1 AAAGCCCACAAGTCAGTGGCATCTTTTTAAAAGCCCACAAGTCAATGGCATCCTTTC
* * *
137754 AAAAGCCCACAAGTCAGTGGCATCCTTTGAAAAGCTCACAAGTCAATGGCATCCTTTC
1 -AAAGCCCACAAGTCAGTGGCATCTTTTTAAAAGCCCACAAGTCAATGGCATCCTTTC
* * * *
137812 AAAAGCCCACAAGTCCA-TGGCATC-CTTTCAAAGCCCACAAGTCTATGGCGTCCTTTC
1 -AAAGCCCACAAGT-CAGTGGCATCTTTTTAAAAGCCCACAAGTCAATGGCATCCTTTC
* ** * * *
137869 AAAGCCCATAAGTGGGTGGCATCCTTTTAAAAGCCCATAAGTCAATGGCATCATTTC
1 AAAGCCCACAAGTCAGTGGCATCTTTTTAAAAGCCCACAAGTCAATGGCATCCTTTC
* * * * **
137926 AAAAGCCTACAAGTCGGTGGCATCTTTTT-AATGCCCATAAGTCTGTGGCA-CCTTTC
1 -AAAGCCCACAAGTCAGTGGCATCTTTTTAAAAGCCCACAAGTCAATGGCATCCTTTC
* * * * *
137982 AAAGCCCACAAGTTAGTGGCA-CTTTTCAAAAGCCAACAAGTCAGTGGCA-CCTTTTA
1 AAAGCCCACAAGTCAGTGGCATCTTTTTAAAAGCCCACAAGTCAATGGCATCC-TTTC
* * *
138038 AAAGCCAACAAGTCAATGGCA-CATTTTCAAAAG-CCACCAAGTCAATGGCA-CCTTTTC
1 AAAGCCCACAAGTCAGTGGCATC-TTTTTAAAAGCCCA-CAAGTCAATGGCATCC-TTTC
*
138095 AAAGCCTACAAGTCAGTG
1 AAAGCCCACAAGTCAGTG
138113 ACAACCCTTT
Statistics
Matches: 361, Mismatches: 46, Indels: 18
0.85 0.11 0.04
Matches are distributed among these distances:
54 5 0.01
55 37 0.10
56 48 0.13
57 169 0.47
58 100 0.28
59 2 0.01
ACGTcount: A:0.32, C:0.28, G:0.17, T:0.24
Consensus pattern (57 bp):
AAAGCCCACAAGTCAGTGGCATCTTTTTAAAAGCCCACAAGTCAATGGCATCCTTTC
Found at i:139618 original size:11 final size:11
Alignment explanation
Indices: 139591--139637 Score: 51
Period size: 11 Copynumber: 4.2 Consensus size: 11
139581 TCAACTAAAA
*
139591 AAAAAAGA-AA
1 AAAAAAGAGAG
139601 AAAAAAGAGAG
1 AAAAAAGAGAG
*
139612 AAAAAAGGGAG
1 AAAAAAGAGAG
139623 AAAGAAAAGAGAG
1 -AA-AAAAGAGAG
139636 AA
1 AA
139638 GAAATAGAAA
Statistics
Matches: 31, Mismatches: 3, Indels: 4
0.82 0.08 0.11
Matches are distributed among these distances:
10 8 0.26
11 11 0.35
12 4 0.13
13 8 0.26
ACGTcount: A:0.74, C:0.00, G:0.26, T:0.00
Consensus pattern (11 bp):
AAAAAAGAGAG
Found at i:141500 original size:97 final size:97
Alignment explanation
Indices: 141340--141670 Score: 545
Period size: 97 Copynumber: 3.4 Consensus size: 97
141330 AATTTTATTT
* * * *
141340 ATCGGGGACACTCTAACCCTATTCCTCCGAGGGGATACTCCAACCCCGCTTTTAAACATATCAAA
1 ATCGGGGACACTCCAACCCCATTCCTCCGAGGGGATACTCAAACCCCGCTTTTAAACACATCAAA
*
141405 GTTTAAATCTTATCCTCACTTAAATTGTCATC
66 GTTTAAATCTTATTCTCACTTAAATTGTCATC
* *
141437 ATCGGGGACACTCCAACCCCATTCTTCCGAGGGGATACTCTAACCCCGCTTTTAAACACATCAAA
1 ATCGGGGACACTCCAACCCCATTCCTCCGAGGGGATACTCAAACCCCGCTTTTAAACACATCAAA
141502 GTTTAAATCTTATTCTCACTTAAATTGTCATC
66 GTTTAAATCTTATTCTCACTTAAATTGTCATC
* * *
141534 ATCGGGGACACTCAAACTCCATTCCTCCGAGGGGATACTCAAACCCCACTTTTAAACACATCAAA
1 ATCGGGGACACTCCAACCCCATTCCTCCGAGGGGATACTCAAACCCCGCTTTTAAACACATCAAA
*
141599 GTTTAAATCTTATTCTCACTTAAATTGTTATC
66 GTTTAAATCTTATTCTCACTTAAATTGTCATC
* *
141631 ATCGGGGACACTCCAACTCCATTCCTCCGAGGAGATACTC
1 ATCGGGGACACTCCAACCCCATTCCTCCGAGGGGATACTC
141671 CAATCCCGTT
Statistics
Matches: 220, Mismatches: 14, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
97 220 1.00
ACGTcount: A:0.29, C:0.29, G:0.13, T:0.29
Consensus pattern (97 bp):
ATCGGGGACACTCCAACCCCATTCCTCCGAGGGGATACTCAAACCCCGCTTTTAAACACATCAAA
GTTTAAATCTTATTCTCACTTAAATTGTCATC
Found at i:144684 original size:28 final size:28
Alignment explanation
Indices: 144644--144715 Score: 99
Period size: 28 Copynumber: 2.6 Consensus size: 28
144634 GAAATAAAGC
** *
144644 CGGGGTTGGAGTATCCCCTCGGAAGTAA
1 CGGGGTTGGAGTATCCCCGAGGAAATAA
*
144672 CGGGGTTGGAGTATCCCCGATGAAATAA
1 CGGGGTTGGAGTATCCCCGAGGAAATAA
*
144700 CGAGGTTGGAGTATCC
1 CGGGGTTGGAGTATCC
144716 TCGATTGTGA
Statistics
Matches: 39, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
28 39 1.00
ACGTcount: A:0.24, C:0.19, G:0.35, T:0.22
Consensus pattern (28 bp):
CGGGGTTGGAGTATCCCCGAGGAAATAA
Found at i:144688 original size:79 final size:78
Alignment explanation
Indices: 144456--144689 Score: 272
Period size: 80 Copynumber: 2.9 Consensus size: 78
144446 TATTTCCTGA
* * * *
144456 TGAGAAATTTAATATTTTGGAGATAATAACGGGGTTGGAGTATCCCCTTGAAAATAATGGGGTTG
1 TGAGAAA-TCAATATTTTGGAAATAA-AACGGGGTTGGAGTATCCCCTCGAAAATAACGGGGTTG
**
144521 GAGTATCCCCGGTTG
64 GAGTATCCCCAATTG
* * * * *
144536 TGAGAAATCGATGA-TTAGGAAAAAAAAATCGGGATTAGAGTATCCCCTCGAAAATAACGGGGTT
1 TGAGAAATCAAT-ATTTTGG-AAATAAAA-CGGGGTTGGAGTATCCCCTCGAAAATAACGGGGTT
144600 GGAGTATCCCCAATTG
63 GGAGTATCCCCAATTG
* * * *
144616 TGATAAATCAATATTTTGGAAATAAAGCCGGGGTTGGAGTATCCCCTCGGAAGTAACGGGGTTGG
1 TGAGAAATCAATATTTTGGAAATAAA-ACGGGGTTGGAGTATCCCCTCGAAAATAACGGGGTTGG
144681 AGTATCCCC
65 AGTATCCCC
144690 GATGAAATAA
Statistics
Matches: 129, Mismatches: 20, Indels: 11
0.81 0.12 0.07
Matches are distributed among these distances:
79 58 0.45
80 71 0.55
ACGTcount: A:0.32, C:0.15, G:0.27, T:0.26
Consensus pattern (78 bp):
TGAGAAATCAATATTTTGGAAATAAAACGGGGTTGGAGTATCCCCTCGAAAATAACGGGGTTGGA
GTATCCCCAATTG
Found at i:144772 original size:51 final size:51
Alignment explanation
Indices: 144704--144800 Score: 131
Period size: 51 Copynumber: 1.9 Consensus size: 51
144694 AAATAACGAG
* * *
144704 GTTGGAGTATCCTCGATTGTGAAAAAATAGTGTTTTGGAAATAAAATCGGA
1 GTTGGAATATCCCCGATTGTGAAAAAATAGTGTTTTAGAAATAAAATCGGA
* * * *
144755 GTTGGAATATCCCCGATTGTGGAGAATTGGTGTTTTAGAAATAAAA
1 GTTGGAATATCCCCGATTGTGAAAAAATAGTGTTTTAGAAATAAAA
144801 CCAAGGTTCG
Statistics
Matches: 39, Mismatches: 7, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
51 39 1.00
ACGTcount: A:0.34, C:0.08, G:0.26, T:0.32
Consensus pattern (51 bp):
GTTGGAATATCCCCGATTGTGAAAAAATAGTGTTTTAGAAATAAAATCGGA
Found at i:144817 original size:51 final size:50
Alignment explanation
Indices: 144702--144819 Score: 128
Period size: 51 Copynumber: 2.3 Consensus size: 50
144692 TGAAATAACG
* * *
144702 AGGTTGGAGTATCCTCGATTGTGAAAAAATAGTGTTTTGGAAATAAAATC
1 AGGTTGGAGTATCCCCGATTGTGAAAAAATAGTGTTTTAGAAATAAAACC
* * * * * *
144752 GGAGTTGGAATATCCCCGATTGTGGAGAATTGGTGTTTTAGAAATAAAACC
1 AG-GTTGGAGTATCCCCGATTGTGAAAAAATAGTGTTTTAGAAATAAAACC
*
144803 AAGGTTCGAGTATCCCC
1 -AGGTTGGAGTATCCCC
144820 TCGAGAATAA
Statistics
Matches: 54, Mismatches: 12, Indels: 3
0.78 0.17 0.04
Matches are distributed among these distances:
50 1 0.02
51 52 0.96
52 1 0.02
ACGTcount: A:0.32, C:0.13, G:0.25, T:0.30
Consensus pattern (50 bp):
AGGTTGGAGTATCCCCGATTGTGAAAAAATAGTGTTTTAGAAATAAAACC
Found at i:144845 original size:79 final size:80
Alignment explanation
Indices: 144755--144979 Score: 274
Period size: 80 Copynumber: 2.8 Consensus size: 80
144745 TAAAATCGGA
* * *
144755 GTTGGAATATCCCCGATTGTGGAGAATTGGTGTTTTAGAAATAAAACC-AAGGTTCGAGTATCCC
1 GTTGGAGTATCCCCGATTGTGAAAAATTGGTGTTTTAGAAATAAAACCGAAGGTTCGAGTATCCC
* *
144819 CTCGAGAATAATGGG
66 CTCGAAAATAACGGG
* * * * ** *
144834 GTTGGAGTATCCCTGATTATAAAAAATTGATGTTTTAGAAATAAAACCGGGGGTTGGAGTATCCC
1 GTTGGAGTATCCCCGATTGTGAAAAATTGGTGTTTTAGAAATAAAACCGAAGGTTCGAGTATCCC
*
144899 TTCGAAAATAACGGG
66 CTCGAAAATAACGGG
* * * *
144914 GTTGGAGTATCCCCGATTGTGAAAAATTGGTGTTTTTGGAAATAAAATCGGA-GTTGGAGTATCC
1 GTTGGAGTATCCCCGATTGTGAAAAATTGGTG-TTTTAGAAATAAAACCGAAGGTTCGAGTATCC
144978 CC
65 CC
144980 GATTAAAGGA
Statistics
Matches: 123, Mismatches: 21, Indels: 3
0.84 0.14 0.02
Matches are distributed among these distances:
79 41 0.33
80 66 0.54
81 16 0.13
ACGTcount: A:0.31, C:0.14, G:0.26, T:0.29
Consensus pattern (80 bp):
GTTGGAGTATCCCCGATTGTGAAAAATTGGTGTTTTAGAAATAAAACCGAAGGTTCGAGTATCCC
CTCGAAAATAACGGG
Found at i:145063 original size:51 final size:50
Alignment explanation
Indices: 144913--145097 Score: 255
Period size: 51 Copynumber: 3.6 Consensus size: 50
144903 AAAATAACGG
* *
144913 GGTTGGAGTATCCCCGATTGTGAAAAATTGGTGTTTTTGGAAATAAAATCG-
1 GGTTGGAGTATCCCCGATTATGAAAAATTGGTG-TTTT-GAAATAAAACCGA
* *
144964 GAGTTGGAGTATCCCCGATTAAAGGAAAATTGGTGTTTTGAAAGTAAAACCGA
1 G-GTTGGAGTATCCCCGATT-ATGAAAAATTGGTGTTTTGAAA-TAAAACCGA
* *
145017 GGTTGGAGTATCCCCGATTATGGAAAATTAGTGTTTTAGAAATAAAACCGA
1 GGTTGGAGTATCCCCGATTATGAAAAATTGGTGTTTT-GAAATAAAACCGA
145068 GGTTGGAGTATCCCCGATTATGAAAAATTG
1 GGTTGGAGTATCCCCGATTATGAAAAATTG
145098 AGAAACTTGA
Statistics
Matches: 121, Mismatches: 8, Indels: 10
0.87 0.06 0.07
Matches are distributed among these distances:
51 58 0.48
52 51 0.42
53 12 0.10
ACGTcount: A:0.33, C:0.11, G:0.26, T:0.30
Consensus pattern (50 bp):
GGTTGGAGTATCCCCGATTATGAAAAATTGGTGTTTTGAAATAAAACCGA
Found at i:147449 original size:19 final size:19
Alignment explanation
Indices: 147425--147474 Score: 91
Period size: 19 Copynumber: 2.6 Consensus size: 19
147415 AGCGATACAT
147425 TGTATCGATACAAAACTTA
1 TGTATCGATACAAAACTTA
*
147444 TGTATCGATACAACACTTA
1 TGTATCGATACAAAACTTA
147463 TGTATCGATACA
1 TGTATCGATACA
147475 TTTACGGTTG
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
19 30 1.00
ACGTcount: A:0.38, C:0.18, G:0.12, T:0.32
Consensus pattern (19 bp):
TGTATCGATACAAAACTTA
Found at i:148514 original size:55 final size:54
Alignment explanation
Indices: 148429--149007 Score: 673
Period size: 55 Copynumber: 10.4 Consensus size: 54
148419 TTGCAAAGAC
* * * *
148429 AAAGCATCCTGCTCTTTGAGGACTGAAAAATGCCACCAACTTGTGTAGGCTTTCA
1 AAAGCGTCCTGCTCTTTGAGGACTGGAAAGTGCCACCAACTTGTGTGGGCTTT-A
* *
148484 AAAGCGTCCTGCTCTTTGAGGACTGGAAAATGCCACCAACTAGTGTGGGCTTTA
1 AAAGCGTCCTGCTCTTTGAGGACTGGAAAGTGCCACCAACTTGTGTGGGCTTTA
* * * * *
148538 AGAGGCGTCCTGCTTTTTGAAGACTGGAAAATGCCACCAACTCGTGTGGGCTTTGA
1 A-AAGCGTCCTGCTCTTTGAGGACTGGAAAGTGCCACCAACTTGTGTGGGCTTT-A
* * *
148594 AAGGCATCCTGCTCTTTGAGGACTGGGAAGTGCCACCAACTTGTGTGGGCTTTA
1 AAAGCGTCCTGCTCTTTGAGGACTGGAAAGTGCCACCAACTTGTGTGGGCTTTA
* *
148648 AAAGGTGTCCTGCTCTTTGAGGACT-GAAAGGTGCCCCCAACTTGTGTGGG-TGTTGA
1 AAA-GCGTCCTGCTCTTTGAGGACTGGAAA-GTGCCACCAACTTGTGTGGGCT-TT-A
* *
148704 AAAGCG-CCTGCTCTTTGAGGACTGGGAAGTGCCACCAACTCGTGTGGGCTTTA
1 AAAGCGTCCTGCTCTTTGAGGACTGGAAAGTGCCACCAACTTGTGTGGGCTTTA
*
148757 AAAGTCGTCCTGCTCTTTGAGGACTGGGAAGTGCCACCAACTTGTGTGGGCTTTA
1 AAAG-CGTCCTGCTCTTTGAGGACTGGAAAGTGCCACCAACTTGTGTGGGCTTTA
* *
148812 AAAGACGTCCTGCTCTTTGAGGA-TTGAAAGGTGCC-CCTAACTTCTGTGGGCTTTGA
1 AAAG-CGTCCTGCTCTTTGAGGACTGGAAA-GTGCCACC-AACTTGTGTGGGCTTT-A
* * * *
148868 AAAGCGCCCTGCTCTTTGAAGACTGGAAAATGCCACCAACTTATGTGGGCTTTGAAAGGA
1 AAAGCGTCCTGCTCTTTGAGGACTGGAAAGTGCCACCAACTTGTGTGGGCTTT------A
* * *
148928 AAAGGCATCCCGCTCTTTGAGGACTAGCAAAGTGCCACCAACTTGTGTGGGCTTTA
1 AAA-GCGTCCTGCTCTTTGAGGACT-GGAAAGTGCCACCAACTTGTGTGGGCTTTA
*
148984 AAAGGCATCCTGCTCTTTGAGGAC
1 AAA-GCGTCCTGCTCTTTGAGGAC
149008 AAAAAGGTGA
Statistics
Matches: 461, Mismatches: 41, Indels: 43
0.85 0.08 0.08
Matches are distributed among these distances:
53 5 0.01
54 54 0.12
55 312 0.68
56 42 0.09
60 5 0.01
61 17 0.04
62 26 0.06
ACGTcount: A:0.24, C:0.22, G:0.27, T:0.27
Consensus pattern (54 bp):
AAAGCGTCCTGCTCTTTGAGGACTGGAAAGTGCCACCAACTTGTGTGGGCTTTA
Found at i:148604 original size:110 final size:110
Alignment explanation
Indices: 148313--149007 Score: 731
Period size: 110 Copynumber: 6.2 Consensus size: 110
148303 ATAAAGTGCA
* * **
148313 TCCTACTCTTTGAGGACT-AAAAAGTGCCACCAACTCATGTGGGCTTTGAAAAGGAAAGGCATCC
1 TCCTGCTCTTTGAGGACTGGAAAA-TGCCACCAACTTGTGTGGGCTTT------GAAAGGCATCC
* * * *
148377 TGCTATTTGAGGACT-GAAAGGTGCCACCAACTCGTGTGGGCTTTGCAAAGACAAAGCA
59 TGCTCTTTGAGGACTGGAAA-GTGCCACCAACTTGTGTGGGCTTT----A-A-AAGGCG
* * * * *
148435 TCCTGCTCTTTGAGGACTGAAAAATGCCACCAACTTGTGTAGGCTTTCAAAAGCGTCCTGCTCTT
1 TCCTGCTCTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTTGAAAGGCATCCTGCTCTT
* * *
148500 TGAGGACTGGAAAATGCCACCAACTAGTGTGGGCTTTAAGAGGCG
66 TGAGGACTGGAAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGCG
* * *
148545 TCCTGCTTTTTGAAGACTGGAAAATGCCACCAACTCGTGTGGGCTTTGAAAGGCATCCTGCTCTT
1 TCCTGCTCTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTTGAAAGGCATCCTGCTCTT
* *
148610 TGAGGACTGGGAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGTG
66 TGAGGACTGGAAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGCG
* * * *
148655 TCCTGCTCTTTGAGGACT-GAAAGGTGCCCCCAACTTGTGTGGG-TGTTGAAAAGC-GCCTGCTC
1 TCCTGCTCTTTGAGGACTGGAAA-ATGCCACCAACTTGTGTGGGCT-TTGAAAGGCATCCTGCTC
* * *
148717 TTTGAGGACTGGGAAGTGCCACCAACTCGTGTGGGCTTTAAAAGTCG
64 TTTGAGGACTGGAAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGCG
* * * * *
148764 TCCTGCTCTTTGAGGACTGGGAAGTGCCACCAACTTGTGTGGGCTTTAAAAGACGTCCTGCTCTT
1 TCCTGCTCTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTTGAAAGGCATCCTGCTCTT
* *
148829 TGAGGA-TTGAAAGGTGCC-CCTAACTTCTGTGGGCTTTGAAAA-GCG
66 TGAGGACTGGAAA-GTGCCACC-AACTTGTGTGGGCTTT-AAAAGGCG
* * * *
148874 CCCTGCTCTTTGAAGACTGGAAAATGCCACCAACTTATGTGGGCTTTGAAAGGAAAAGGCATCCC
1 TCCTGCTCTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTT-----G-AAAGGCATCCT
* *
148939 GCTCTTTGAGGACTAGCAAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGCA
60 GCTCTTTGAGGACT-GGAAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGCG
148991 TCCTGCTCTTTGAGGAC
1 TCCTGCTCTTTGAGGAC
149008 AAAAAGGTGA
Statistics
Matches: 491, Mismatches: 62, Indels: 45
0.82 0.10 0.08
Matches are distributed among these distances:
109 105 0.21
110 223 0.45
111 5 0.01
112 1 0.00
116 68 0.14
117 42 0.09
118 5 0.01
122 37 0.08
123 5 0.01
ACGTcount: A:0.24, C:0.22, G:0.27, T:0.26
Consensus pattern (110 bp):
TCCTGCTCTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTTGAAAGGCATCCTGCTCTT
TGAGGACTGGAAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGCG
Found at i:148775 original size:274 final size:273
Alignment explanation
Indices: 148305--149199 Score: 904
Period size: 274 Copynumber: 3.2 Consensus size: 273
148295 AGAGGAAAAT
* *
148305 AAAGTGCATCCTACTCTTTGAGGACTAAAAAGTGCCACCAACTCATGTGGGCTTTGAAAAGGAAA
1 AAAG-GCATCCTACTCTTTGAGGACTGAAAAGTGCCACCAACTTATGTGGGCTTTG---A--AAA
* * *
148370 GGCATCCTGCTATTTGAGGACTGAAAGGTGCCACCAACTCGTGTGGGCTTTGCAAAGACAAAGCA
60 GGCGTCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTT-----GA-AAAGCA
* *
148435 TCCTGCTCTTTGAGGACTGAAAAATGCCACCAACTTGTGTAGGCTTTCAAAAGCGTCCTGCTCTT
119 TCCTGCTCTTTGAGGACTGAAAAGTGCCACCAAC-TGTGTGGGCTTT-AAAAGCGTCCTGCTCTT
* * * * *
148500 TGAGGACTGGAAAATGCCACCAACTAGTGTGGGCTTTAAGAGGCGTCCTGCTTTTTGAAGACTGG
182 TGAGGACTGG-AAGTGCCACCAACTTGTGTGGGCTTTAAAAGGCGTCCTGCTCTTTGAGGACTGG
148565 AAAATGCCACCAACTCGTGTGGGCTTTG
246 AAAATGCCACCAACTCGTGTGGGCTTTG
* ** * *
148593 AAAGGCATCCTGCTCTTTGAGGACTGGGAAGTGCCACCAACTTGTGTGGGCTTT-AAAAGGTGTC
1 AAAGGCATCCTACTCTTTGAGGACTGAAAAGTGCCACCAACTTATGTGGGCTTTGAAAAGGCGTC
* *
148657 CTGCTCTTTGAGGACTGAAAGGTGCCCCCAACTTGTGTGGG-TGTTGAAAAGC-GCCTGCTCTTT
66 CTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCT-TTGAAAAGCATCCTGCTCTTT
**
148720 GAGGACTGGGAAGTGCCACCAACTCGTGTGGGCTTTAAAAGTCGTCCTGCTCTTTGAGGACTGGG
130 GAGGACTGAAAAGTGCCACCAACT-GTGTGGGCTTTAAAAG-CGTCCTGCTCTTTGAGGACT-GG
* * *
148785 AAGTGCCACCAACTTGTGTGGGCTTTAAAAGACGTCCTGCTCTTTGAGGA-TTGAAAGGTGCC-C
192 AAGTGCCACCAACTTGTGTGGGCTTTAAAAGGCGTCCTGCTCTTTGAGGACTGGAAA-ATGCCAC
148848 CTAACTTC-TGTGGGCTTTG
256 C-AAC-TCGTGTGGGCTTTG
* ** * *
148867 AAAAGCGCCCTGCTCTTTGAAGACTGGAAAA-TGCCACCAACTTATGTGGGCTTTGAAAGGAAAA
1 AAAGGCATCCTACTCTTTGAGGACT-GAAAAGTGCCACCAACTTATGTGGGCTTT-----GAAAA
* *
148931 GGCATCCCGCTCTTTGAGGACTAGCAAA-GTGCCACCAACTTGTGTGGGCTTT-AAAAGGCATCC
60 GGCGTCCTGCTCTTTGAGGACT-G-AAAGGTGCCACCAACTTGTGTGGGCTTTGAAAA-GCATCC
* * *
148994 TGCTCTTTGAGGAC-AAAAAGGTG--A--AA----G-GAG-----AGAGCGTCCTGCTCTTTGAG
122 TGCTCTTTGAGGACTGAAAA-GTGCCACCAACTGTGTGGGCTTTAAAAGCGTCCTGCTCTTTGAG
* *
149044 GACTAGGAAGTGCCACCAACTTGTGTGGGCTTTAAAAAGCGTCCTACTCTTTGAGGACTGGAAAA
186 GACT-GGAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGCGTCCTGCTCTTTGAGGACTGGAAAA
*
149109 TGCCACCAACTTGTGTGGGCTTTGAAAGG
250 TGCCACCAACTCGTGTGGGCTTT-----G
* *
149138 AAAAGGCATCCCACTCTTTGAGGACTAGAAAAGTGCCACCAACTTGTGTGGGCTTT-AAAAGG
1 -AAAGGCATCCTACTCTTTGAGGACT-GAAAAGTGCCACCAACTTATGTGGGCTTTGAAAAGG
149200 AAAAGGCATC
Statistics
Matches: 521, Mismatches: 56, Indels: 81
0.79 0.09 0.12
Matches are distributed among these distances:
265 1 0.00
266 86 0.17
267 16 0.03
271 1 0.00
272 26 0.05
273 36 0.07
274 165 0.32
275 12 0.02
276 2 0.00
278 2 0.00
280 29 0.06
281 73 0.14
282 23 0.04
283 1 0.00
287 44 0.08
288 4 0.01
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.26
Consensus pattern (273 bp):
AAAGGCATCCTACTCTTTGAGGACTGAAAAGTGCCACCAACTTATGTGGGCTTTGAAAAGGCGTC
CTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAAGCATCCTGCTCTTTG
AGGACTGAAAAGTGCCACCAACTGTGTGGGCTTTAAAAGCGTCCTGCTCTTTGAGGACTGGAAGT
GCCACCAACTTGTGTGGGCTTTAAAAGGCGTCCTGCTCTTTGAGGACTGGAAAATGCCACCAACT
CGTGTGGGCTTTG
Found at i:149097 original size:211 final size:211
Alignment explanation
Indices: 148817--149199 Score: 644
Period size: 211 Copynumber: 1.8 Consensus size: 211
148807 CTTTAAAAGA
* * *
148817 CGTCCTGCTCTTTGAGGATTGAAAGGTGCCCCTAACTTCTGTGGGCTTTGAAAAGCGCCCTGCTC
1 CGTCCTGCTCTTTGAGGATAGAAAGGTGCCCCTAACTTCTGTGGGCTTTAAAAAGCGCCCTACTC
*
148882 TTTGAAGACTGGAAAATGCCACCAACTTATGTGGGCTTTGAAAGGAAAAGGCATCCCGCTCTTTG
66 TTTGAAGACTGGAAAATGCCACCAACTTATGTGGGCTTTGAAAGGAAAAGGCATCCCACTCTTTG
*
148947 AGGACTAGCAAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGCATCCTGCTCTTTGAGGACAAAA
131 AGGACTAGAAAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGCATCCTGCTCTTTGAGGACAAAA
149012 AGGTGAAAGGAGAGAG
196 AGGTGAAAGGAGAGAG
* * *
149028 CGTCCTGCTCTTTGAGGACTAGGAA-GTGCCACC-AACTTGTGTGGGCTTTAAAAAGCGTCCTAC
1 CGTCCTGCTCTTTGAGGA-TAGAAAGGTGCC-CCTAACTTCTGTGGGCTTTAAAAAGCGCCCTAC
* *
149091 TCTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTTGAAAGGAAAAGGCATCCCACTCTT
64 TCTTTGAAGACTGGAAAATGCCACCAACTTATGTGGGCTTTGAAAGGAAAAGGCATCCCACTCTT
149156 TGAGGACTAGAAAAGTGCCACCAACTTGTGTGGGCTTTAAAAGG
129 TGAGGACTAGAAAAGTGCCACCAACTTGTGTGGGCTTTAAAAGG
149200 AAAAGGCATC
Statistics
Matches: 160, Mismatches: 10, Indels: 4
0.92 0.06 0.02
Matches are distributed among these distances:
211 154 0.96
212 6 0.04
ACGTcount: A:0.27, C:0.21, G:0.27, T:0.25
Consensus pattern (211 bp):
CGTCCTGCTCTTTGAGGATAGAAAGGTGCCCCTAACTTCTGTGGGCTTTAAAAAGCGCCCTACTC
TTTGAAGACTGGAAAATGCCACCAACTTATGTGGGCTTTGAAAGGAAAAGGCATCCCACTCTTTG
AGGACTAGAAAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGCATCCTGCTCTTTGAGGACAAAA
AGGTGAAAGGAGAGAG
Found at i:149113 original size:55 final size:55
Alignment explanation
Indices: 149026--149197 Score: 220
Period size: 55 Copynumber: 3.0 Consensus size: 55
149016 GAAAGGAGAG
* *
149026 AGCGTCCTGCTCTTTGAGGACTAGG-AAGTGCCACCAACTTGTGTGGGCTTTAAAA
1 AGCGTCCTACTCTTTGAGGACT-GGAAAATGCCACCAACTTGTGTGGGCTTTAAAA
149081 AGCGTCCTACTCTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTTGAAAGGAAA
1 AGCGTCCTACTCTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTT---A--AAA
* * *
149141 AGGCATCCCACTCTTTGAGGACTAGAAAAGTGCCACCAACTTGTGTGGGCTTTAAAA
1 A-GCGTCCTACTCTTTGAGGACTGGAAAA-TGCCACCAACTTGTGTGGGCTTTAAAA
149198 GGAAAAGGCA
Statistics
Matches: 104, Mismatches: 5, Indels: 14
0.85 0.04 0.11
Matches are distributed among these distances:
54 2 0.02
55 46 0.44
57 3 0.03
58 1 0.01
59 1 0.01
60 4 0.04
61 24 0.23
62 23 0.22
ACGTcount: A:0.27, C:0.22, G:0.26, T:0.26
Consensus pattern (55 bp):
AGCGTCCTACTCTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTTAAAA
Found at i:149189 original size:62 final size:61
Alignment explanation
Indices: 149030--149233 Score: 262
Period size: 62 Copynumber: 3.4 Consensus size: 61
149020 GGAGAGAGCG
* * *
149030 TCCTGCTCTTTGAGGACTAG-GAAGTGCCACCAACTTGTGTGGGCTTT--A--AAAA-GCG
1 TCCTACTCTTTGAGGACTAGAAAAGTGCCACCAACTTGTGTGGGCTTTAAAGGAAAAGGCA
*
149085 TCCTACTCTTTGAGGACTGGAAAA-TGCCACCAACTTGTGTGGGCTTTGAAAGGAAAAGGCA
1 TCCTACTCTTTGAGGACTAGAAAAGTGCCACCAACTTGTGTGGGCTTT-AAAGGAAAAGGCA
*
149146 TCCCACTCTTTGAGGACTAGAAAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGAAAAGGCA
1 TCCTACTCTTTGAGGACTAGAAAAGTGCCACCAACTTGTGTGGGCTTT-AAAGGAAAAGGCA
* * *
149208 TCCTGCTCCTTGAAGACT-GAAAAGTG
1 TCCTACTCTTTGAGGACTAGAAAAGTG
149234 GAAGGGGAAG
Statistics
Matches: 130, Mismatches: 11, Indels: 10
0.86 0.07 0.07
Matches are distributed among these distances:
55 41 0.32
56 2 0.02
58 1 0.01
60 4 0.03
61 32 0.25
62 50 0.38
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.25
Consensus pattern (61 bp):
TCCTACTCTTTGAGGACTAGAAAAGTGCCACCAACTTGTGTGGGCTTTAAAGGAAAAGGCA
Found at i:150190 original size:1 final size:1
Alignment explanation
Indices: 150184--150257 Score: 76
Period size: 1 Copynumber: 74.0 Consensus size: 1
150174 AAGTAGATTC
* * * * * * * *
150184 TTTTTTTTGTTTTTTTGTTTTTTTTTGTTTTTTTTGTTTTTTTTTTGTTTTTTTGTTGTTTTTTG
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
150249 TTTTTTTTT
1 TTTTTTTTT
150258 GAAAAAAGAA
Statistics
Matches: 57, Mismatches: 16, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
1 57 1.00
ACGTcount: A:0.00, C:0.00, G:0.11, T:0.89
Consensus pattern (1 bp):
T
Found at i:150199 original size:10 final size:10
Alignment explanation
Indices: 150184--150258 Score: 104
Period size: 10 Copynumber: 7.9 Consensus size: 10
150174 AAGTAGATTC
150184 TTTTTTTTG-
1 TTTTTTTTGT
150193 -TTTTTTTGT
1 TTTTTTTTGT
150202 TTTTTTTTG-
1 TTTTTTTTGT
150211 TTTTTTTTGT
1 TTTTTTTTGT
150221 TTTTTTTT-T
1 TTTTTTTTGT
*
150230 GTTTTTTTGT
1 TTTTTTTTGT
*
150240 TGTTTTTTGT
1 TTTTTTTTGT
150250 TTTTTTTTG
1 TTTTTTTTG
150259 AAAAAAGAAT
Statistics
Matches: 58, Mismatches: 4, Indels: 7
0.84 0.06 0.10
Matches are distributed among these distances:
8 8 0.14
9 17 0.29
10 33 0.57
ACGTcount: A:0.00, C:0.00, G:0.12, T:0.88
Consensus pattern (10 bp):
TTTTTTTTGT
Found at i:150208 original size:19 final size:18
Alignment explanation
Indices: 150184--150255 Score: 117
Period size: 18 Copynumber: 3.9 Consensus size: 18
150174 AAGTAGATTC
150184 TTTTTTTTGTTTTTTTGT
1 TTTTTTTTGTTTTTTTGT
150202 TTTTTTTTGTTTTTTTTGTT
1 TTTTTTTTG-TTTTTTTG-T
150222 TTTTTTTTGTTTTTTTGT
1 TTTTTTTTGTTTTTTTGT
*
150240 TGTTTTTTGTTTTTTT
1 TTTTTTTTGTTTTTTT
150256 TTGAAAAAAG
Statistics
Matches: 51, Mismatches: 1, Indels: 4
0.91 0.02 0.07
Matches are distributed among these distances:
18 25 0.49
19 16 0.31
20 10 0.20
ACGTcount: A:0.00, C:0.00, G:0.11, T:0.89
Consensus pattern (18 bp):
TTTTTTTTGTTTTTTTGT
Found at i:150234 original size:38 final size:38
Alignment explanation
Indices: 150184--150256 Score: 137
Period size: 38 Copynumber: 1.9 Consensus size: 38
150174 AAGTAGATTC
*
150184 TTTTTTTTGTTTTTTTGTTTTTTTTTGTTTTTTTTGTT
1 TTTTTTTTGTTTTTTTGTTGTTTTTTGTTTTTTTTGTT
150222 TTTTTTTTGTTTTTTTGTTGTTTTTTGTTTTTTTT
1 TTTTTTTTGTTTTTTTGTTGTTTTTTGTTTTTTTT
150257 TGAAAAAAGA
Statistics
Matches: 34, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
38 34 1.00
ACGTcount: A:0.00, C:0.00, G:0.11, T:0.89
Consensus pattern (38 bp):
TTTTTTTTGTTTTTTTGTTGTTTTTTGTTTTTTTTGTT
Found at i:150256 original size:19 final size:18
Alignment explanation
Indices: 150184--150256 Score: 103
Period size: 19 Copynumber: 3.9 Consensus size: 18
150174 AAGTAGATTC
150184 TTTTTTTTG-TTTTTTTG
1 TTTTTTTTGTTTTTTTTG
150201 TTTTTTTTTGTTTTTTTTG
1 -TTTTTTTTGTTTTTTTTG
*
150220 TTTTTTTTTTGTTTTTTTG
1 TTTTTTTTGT-TTTTTTTG
150239 TTGTTTTTTGTTTTTTTT
1 TT-TTTTTTGTTTTTTTT
150257 TGAAAAAAGA
Statistics
Matches: 50, Mismatches: 2, Indels: 5
0.88 0.04 0.09
Matches are distributed among these distances:
18 18 0.36
19 25 0.50
20 7 0.14
ACGTcount: A:0.00, C:0.00, G:0.11, T:0.89
Consensus pattern (18 bp):
TTTTTTTTGTTTTTTTTG
Found at i:158143 original size:14 final size:15
Alignment explanation
Indices: 158114--158148 Score: 54
Period size: 14 Copynumber: 2.4 Consensus size: 15
158104 ACAACAGGTG
*
158114 AAATAATGTTGCACA
1 AAATAATGTCGCACA
158129 AAATAAT-TCGCACA
1 AAATAATGTCGCACA
158143 AAATAA
1 AAATAA
158149 CAATAGAGAA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
14 12 0.63
15 7 0.37
ACGTcount: A:0.54, C:0.14, G:0.09, T:0.23
Consensus pattern (15 bp):
AAATAATGTCGCACA
Found at i:160807 original size:73 final size:73
Alignment explanation
Indices: 160688--160830 Score: 250
Period size: 73 Copynumber: 2.0 Consensus size: 73
160678 TACATGCCTT
* * * *
160688 TGAAATTATAGCCGTTGGGCTTAATGTATAGTGATGAACAGTGATGTATCGATACATGAACCGTG
1 TGAAATTATAGCCGTTAGGCTCAATGTATAGTGATGAACAGTGATGTATCAATACATGAACAGTG
160753 ATGAACAG
66 ATGAACAG
160761 TGAAATTATAGCCGTTAGGCTCAATGTATAGTGATGAACAGTGATGTATCAATACATGAACAGTG
1 TGAAATTATAGCCGTTAGGCTCAATGTATAGTGATGAACAGTGATGTATCAATACATGAACAGTG
160826 ATGAA
66 ATGAA
160831 TAATGAAAAT
Statistics
Matches: 66, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
73 66 1.00
ACGTcount: A:0.35, C:0.12, G:0.24, T:0.29
Consensus pattern (73 bp):
TGAAATTATAGCCGTTAGGCTCAATGTATAGTGATGAACAGTGATGTATCAATACATGAACAGTG
ATGAACAG
Found at i:162472 original size:13 final size:13
Alignment explanation
Indices: 162454--162489 Score: 54
Period size: 13 Copynumber: 2.8 Consensus size: 13
162444 ACCAAAGCAT
162454 TGTATCGATACAA
1 TGTATCGATACAA
*
162467 TGTATCGATACAG
1 TGTATCGATACAA
*
162480 TATATCGATA
1 TGTATCGATA
162490 TAACTTTCTT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
13 21 1.00
ACGTcount: A:0.36, C:0.14, G:0.17, T:0.33
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:163124 original size:23 final size:24
Alignment explanation
Indices: 163079--163125 Score: 62
Period size: 23 Copynumber: 2.0 Consensus size: 24
163069 CAAAGGAGTG
*
163079 AACACAAATTCAATTAAGCACAAA
1 AACACAAATTCAATTAAGAACAAA
163103 AACACAAA-TCAATTGAA-AACAAA
1 AACACAAATTCAATT-AAGAACAAA
163126 TTTTCAACAA
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
23 11 0.52
24 10 0.48
ACGTcount: A:0.62, C:0.19, G:0.04, T:0.15
Consensus pattern (24 bp):
AACACAAATTCAATTAAGAACAAA
Found at i:166021 original size:73 final size:73
Alignment explanation
Indices: 165896--166033 Score: 215
Period size: 73 Copynumber: 1.9 Consensus size: 73
165886 CATGCATTTA
* *
165896 AAATTATAGCCATTGGGCTTAATGTATAGTGATGAACAGTGGTGTACTGATACATGAACAGTGAT
1 AAATTATAGCCATTGGGCTTAATGTATAGTGATGAACAGTGATGTACTGATACATAAACAGTGAT
165961 GAACAGTT
66 GAACAGTT
* * *
165969 AAATTATTGTCATTGGGCTTAATGTTTAGTGATGAACAGTGATGTA-TCGATACATAAACAGTGA
1 AAATTATAGCCATTGGGCTTAATGTATAGTGATGAACAGTGATGTACT-GATACATAAACAGTGA
166033 T
65 T
166034 TATATTGATT
Statistics
Matches: 59, Mismatches: 5, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
72 1 0.02
73 58 0.98
ACGTcount: A:0.34, C:0.10, G:0.23, T:0.33
Consensus pattern (73 bp):
AAATTATAGCCATTGGGCTTAATGTATAGTGATGAACAGTGATGTACTGATACATAAACAGTGAT
GAACAGTT
Found at i:168487 original size:148 final size:149
Alignment explanation
Indices: 168321--168598 Score: 389
Period size: 149 Copynumber: 1.9 Consensus size: 149
168311 ATTGGGATAT
* * * *
168321 TTTCATGTCAAAGGTATACCT-TATGGGCATTTTTATAATTTTATTAAAATCGAGTCCTAATTTA
1 TTTCACGTCAAAGGTATACCTATAGGGGCATTTTCATAATTTTATTAAAACCGAGTCCTAATTTA
* * * *
168385 TCATCAGGTTACTTCTATGTCGAGGGTACGTATTAGGCATAGATTCGCTTTTCCTTTTTTA-GTC
66 TCATCAGGTCACCTCTATGCCGAGGGTACGTATTAGACATAGATTCGCTTTT-CTTTTTTATGTC
168449 CTTTAGGGTTGCCGGGGTAC
130 CTTTAGGGTTGCCGGGGTAC
* * *
168469 TTTCACGTCAAAGGTATACCTATAGGGGCATTTTCATAATTTTTTTACAACCGAGTCCTAATTTG
1 TTTCACGTCAAAGGTATACCTATAGGGGCATTTTCATAATTTTATTAAAACCGAGTCCTAATTTA
* * ** *
168534 TCATCGGGTCACCTCTATGCCGAGGGTAGGTATTAGATGTAGGTTCGCTTTTCTTTTTTATGTCC
66 TCATCAGGTCACCTCTATGCCGAGGGTACGTATTAGACATAGATTCGCTTTTCTTTTTTATGTCC
168599 CTTAAGATCT
Statistics
Matches: 112, Mismatches: 16, Indels: 3
0.85 0.12 0.02
Matches are distributed among these distances:
148 28 0.25
149 84 0.75
ACGTcount: A:0.22, C:0.18, G:0.20, T:0.40
Consensus pattern (149 bp):
TTTCACGTCAAAGGTATACCTATAGGGGCATTTTCATAATTTTATTAAAACCGAGTCCTAATTTA
TCATCAGGTCACCTCTATGCCGAGGGTACGTATTAGACATAGATTCGCTTTTCTTTTTTATGTCC
TTTAGGGTTGCCGGGGTAC
Found at i:172742 original size:18 final size:21
Alignment explanation
Indices: 172719--172757 Score: 57
Period size: 18 Copynumber: 2.0 Consensus size: 21
172709 TGTTGTGCTA
172719 AAAACAT-G-AAAA-ATGCAT
1 AAAACATAGTAAAAGATGCAT
172737 AAAACATAGTAAAAGATGCAT
1 AAAACATAGTAAAAGATGCAT
172758 GAACAAGGGC
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
18 7 0.39
19 1 0.06
20 4 0.22
21 6 0.33
ACGTcount: A:0.59, C:0.10, G:0.13, T:0.18
Consensus pattern (21 bp):
AAAACATAGTAAAAGATGCAT
Found at i:173675 original size:30 final size:30
Alignment explanation
Indices: 173639--173713 Score: 132
Period size: 30 Copynumber: 2.5 Consensus size: 30
173629 TACATTGAGA
*
173639 AATGTATCAATACATCTGGGTAAAAAAAAG
1 AATGTATCGATACATCTGGGTAAAAAAAAG
*
173669 AATGTATCGATACATCTGGGTAAAAAACAG
1 AATGTATCGATACATCTGGGTAAAAAAAAG
173699 AATGTATCGATACAT
1 AATGTATCGATACAT
173714 GTACTATCGA
Statistics
Matches: 43, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
30 43 1.00
ACGTcount: A:0.45, C:0.12, G:0.17, T:0.25
Consensus pattern (30 bp):
AATGTATCGATACATCTGGGTAAAAAAAAG
Done.