Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold217
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 207949
ACGTcount: A:0.32, C:0.18, G:0.17, T:0.32
File 2 of 2
Found at i:180948 original size:51 final size:51
Alignment explanation
Indices: 180888--181002 Score: 167
Period size: 51 Copynumber: 2.3 Consensus size: 51
180878 TTTCTGAGGA
* * *
180888 GATACTCCAACCCCGGTTTTATTTCTAAAACACCAATTTTTCACACTAAAG
1 GATACTCCAACCCCGATTTTATTTCCAAAACACCAATTTTTCACAATAAAG
* ***
180939 GATACTCCAACTCCGATTTTATTTCCAAAACACCAATTTTTCACAATCGGG
1 GATACTCCAACCCCGATTTTATTTCCAAAACACCAATTTTTCACAATAAAG
180990 GATACTCCAACCC
1 GATACTCCAACCC
181003 TGTTATTTCG
Statistics
Matches: 56, Mismatches: 8, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
51 56 1.00
ACGTcount: A:0.32, C:0.30, G:0.09, T:0.30
Consensus pattern (51 bp):
GATACTCCAACCCCGATTTTATTTCCAAAACACCAATTTTTCACAATAAAG
Found at i:181020 original size:28 final size:28
Alignment explanation
Indices: 180987--181056 Score: 97
Period size: 28 Copynumber: 2.5 Consensus size: 28
180977 TTTCACAATC
*
180987 GGGGATACTCCAACCCTGTTATTTCGTCA
1 GGGGATACTCCAACCCCGTTATTTC-TCA
* *
181016 -GGGATACTCTAACCCCGTTATTTCTGA
1 GGGGATACTCCAACCCCGTTATTTCTCA
181043 GGGGATACTCCAAC
1 GGGGATACTCCAAC
181057 TCTGGCTTTA
Statistics
Matches: 36, Mismatches: 4, Indels: 3
0.84 0.09 0.07
Matches are distributed among these distances:
27 2 0.06
28 34 0.94
ACGTcount: A:0.23, C:0.27, G:0.21, T:0.29
Consensus pattern (28 bp):
GGGGATACTCCAACCCCGTTATTTCTCA
Found at i:181226 original size:79 final size:77
Alignment explanation
Indices: 181016--181271 Score: 221
Period size: 79 Copynumber: 3.2 Consensus size: 77
181006 TATTTCGTCA
* * * * **
181016 GGGATACTCTAACCCCGTTA-TTTCTGAGGGGATACTCCAACTCTGGCTTTATTTCTAAAATATT
1 GGGATACTCCAACCCCGTTATTTTC-GAGGGGATACTCCAACCCCGGCTTTATTTCT-AAACACC
*
181080 GATTTCTCACAATCG
64 GATTTC-CATAATCG
* * * * * * *
181095 TGGACTATTCCAACCCCGTTATTTTTGCGGGGA-ACTCTAACCTCGGCCTTATTTCTAAAGCACC
1 GGGA-TACTCCAACCCCGTTATTTTCGAGGGGATACTCCAACCCCGGCTTTATTTCTAAA-CACC
181159 GACTTTCCATAATCG
64 GA-TTTCCATAATCG
* * **
181174 GGGATACTCTAACCCCGTTATTTTCGAAGGGATACTCCAACCCCGATTTTATTT-TCAGAACACC
1 GGGATACTCCAACCCCGTTATTTTCGAGGGGATACTCCAACCCCGGCTTTATTTCT-A-AACACC
* *
181238 GATTTTCTATAATCA
64 GA-TTTCCATAATCG
*
181253 GGGATACTCCAGCCCCGTT
1 GGGATACTCCAACCCCGTT
181272 GTTATCCCCA
Statistics
Matches: 140, Mismatches: 30, Indels: 14
0.76 0.16 0.08
Matches are distributed among these distances:
78 27 0.19
79 84 0.60
80 26 0.19
81 3 0.02
ACGTcount: A:0.25, C:0.27, G:0.16, T:0.32
Consensus pattern (77 bp):
GGGATACTCCAACCCCGTTATTTTCGAGGGGATACTCCAACCCCGGCTTTATTTCTAAACACCGA
TTTCCATAATCG
Found at i:184700 original size:16 final size:16
Alignment explanation
Indices: 184663--184706 Score: 56
Period size: 16 Copynumber: 2.8 Consensus size: 16
184653 AAAGTCGAAA
184663 GCAAAAGCATAAAAAAT
1 GCAAAAGCA-AAAAAAT
184680 G-AAAAG-AAAAAAAGT
1 GCAAAAGCAAAAAAA-T
184695 GCAAAAGCAAAA
1 GCAAAAGCAAAA
184707 TAAAAAAGGG
Statistics
Matches: 24, Mismatches: 0, Indels: 6
0.80 0.00 0.20
Matches are distributed among these distances:
14 6 0.25
15 3 0.12
16 10 0.42
17 5 0.21
ACGTcount: A:0.68, C:0.09, G:0.16, T:0.07
Consensus pattern (16 bp):
GCAAAAGCAAAAAAAT
Found at i:186101 original size:27 final size:27
Alignment explanation
Indices: 186064--186594 Score: 360
Period size: 27 Copynumber: 19.4 Consensus size: 27
186054 TTTCTTTTCA
186064 AAGTCCACAACTTCGTGGCATCTTTTT
1 AAGTCCACAACTTCGTGGCATCTTTTT
* *
186091 AAGTCCACAAC-TCTATGGCATCCTTTTA
1 AAGTCCACAACTTC-GTGGCAT-CTTTTT
* * *
186119 AAGTCCACCACTCCGTGGCACCTTTTT
1 AAGTCCACAACTTCGTGGCATCTTTTT
* * * *
186146 AAGTTCACAACTCCGTGGAATCCTTTT
1 AAGTCCACAACTTCGTGGCATCTTTTT
* *
186173 AAGTCCATAAC-TCTGTGGCATCCTTTTA
1 AAGTCCACAACTTC-GTGGCAT-CTTTTT
* * ** *
186201 AAGTACACAACTCCACGGCACCTTTTT
1 AAGTCCACAACTTCGTGGCATCTTTTT
* * *
186228 AAAGTCCACAACTCCGTGGCACCCTTTTA
1 -AAGTCCACAACTTCGTGGCA-TCTTTTT
*
186257 AAGTCCACAAC-TCTGTGGCATCCTTTT
1 AAGTCCACAACTTC-GTGGCATCTTTTT
* * * * * *
186284 AAGTCTACAACTCCATGGCACCCTTTA
1 AAGTCCACAACTTCGTGGCATCTTTTT
* * *
186311 AAGTCCACAAC-TCTATGGCACCCTTTTA
1 AAGTCCACAACTTC-GTGGCA-TCTTTTT
*
186339 AAGTCCACCAC-TCTGTGGCA-CTTTTTT
1 AAGTCCACAACTTC-GTGGCATC-TTTTT
* *
186366 AAGTTCACAAC-TCTGTGGCATCCTTTT
1 AAGTCCACAACTTC-GTGGCATCTTTTT
* * *
186393 AAGTCCACAACTCCGTGGCACCGTTTT
1 AAGTCCACAACTTCGTGGCATCTTTTT
* * * *
186420 AAGTCCACAACTTCATGCCATCCATTTC
1 AAGTCCACAACTTCGTGGCAT-CTTTTT
* * *
186448 AAGTCCACAGCTCCGTGGCATTCTTTTA
1 AAGTCCACAACTTCGTGGCA-TCTTTTT
* *
186476 AAGTCCACAA-TTCTGTGGCACCCTTTT
1 AAGTCCACAACTTC-GTGGCATCTTTTT
* * * *
186503 AAGTACACCACTCCATGGCA-CTCTTTT
1 AAGTCCACAACTTCGTGGCATCT-TTTT
* * * *
186530 AAGTCTAGAACTCCGTGGCATCCTTTT
1 AAGTCCACAACTTCGTGGCATCTTTTT
*
186557 AAGTCCACAACTTCGTGGTATCCTTTTT
1 AAGTCCACAACTTCGTGGCAT-CTTTTT
*
186585 AAGCCCACAA
1 AAGTCCACAA
186595 GTCAGTGGCA
Statistics
Matches: 397, Mismatches: 85, Indels: 43
0.76 0.16 0.08
Matches are distributed among these distances:
26 6 0.02
27 228 0.57
28 154 0.39
29 9 0.02
ACGTcount: A:0.25, C:0.30, G:0.14, T:0.31
Consensus pattern (27 bp):
AAGTCCACAACTTCGTGGCATCTTTTT
Found at i:186137 original size:55 final size:54
Alignment explanation
Indices: 186064--186594 Score: 546
Period size: 55 Copynumber: 9.7 Consensus size: 54
186054 TTTCTTTTCA
* *
186064 AAGTCCACAACTTCGTGGCATCTTTTTAAGTCCACAACTCTATGGCATCCTTTT
1 AAGTCCACAACTCCGTGGCACCTTTTTAAGTCCACAACTCTATGGCATCCTTTT
* * ** *
186118 AAAGTCCACCACTCCGTGGCACCTTTTTAAGTTCACAACTCCGTGGAATCCTTTT
1 -AAGTCCACAACTCCGTGGCACCTTTTTAAGTCCACAACTCTATGGCATCCTTTT
* * * * * *
186173 AAGTCCATAACTCTGTGGCATCCTTTTAAAGTACACAACTCCACGGCA-CCTTTTT
1 AAGTCCACAACTCCGTGGCA-CCTTTTTAAGTCCACAACTCTATGGCATCC-TTTT
* *
186228 AAAGTCCACAACTCCGTGGCACCCTTTTAAAGTCCACAACTCTGTGGCATCCTTTT
1 -AAGTCCACAACTCCGTGGCA-CCTTTTTAAGTCCACAACTCTATGGCATCCTTTT
* * * * *
186284 AAGTCTACAACTCCATGGCACCCTTTAAAGTCCACAACTCTATGGCACCCTTTT
1 AAGTCCACAACTCCGTGGCACCTTTTTAAGTCCACAACTCTATGGCATCCTTTT
* * * * *
186338 AAAGTCCACCACTCTGTGGCACTTTTTTAAGTTCACAACTCTGTGGCATCCTTTT
1 -AAGTCCACAACTCCGTGGCACCTTTTTAAGTCCACAACTCTATGGCATCCTTTT
* * *
186393 AAGTCCACAACTCCGTGGCACCGTTTTAAGTCCACAACT-TCATGCCATCCATTTC
1 AAGTCCACAACTCCGTGGCACCTTTTTAAGTCCACAACTCT-ATGGCATCC-TTTT
* * * * * *
186448 AAGTCCACAGCTCCGTGGCATTCTTTTAAAGTCCACAATTCTGTGGCACCCTTTT
1 AAGTCCACAACTCCGTGGCA-CCTTTTTAAGTCCACAACTCTATGGCATCCTTTT
* * * * * **
186503 AAGTACACCACTCCATGGCA-CTCTTTTAAGTCTAGAACTCCGTGGCATCCTTTT
1 AAGTCCACAACTCCGTGGCACCT-TTTTAAGTCCACAACTCTATGGCATCCTTTT
* * *
186557 AAGTCCACAACTTCGTGGTATCCTTTTTAAGCCCACAA
1 AAGTCCACAACTCCGTGGCA-CCTTTTTAAGTCCACAA
186595 GTCAGTGGCA
Statistics
Matches: 392, Mismatches: 72, Indels: 24
0.80 0.15 0.05
Matches are distributed among these distances:
53 3 0.01
54 131 0.33
55 187 0.48
56 68 0.17
57 3 0.01
ACGTcount: A:0.25, C:0.30, G:0.14, T:0.31
Consensus pattern (54 bp):
AAGTCCACAACTCCGTGGCACCTTTTTAAGTCCACAACTCTATGGCATCCTTTT
Found at i:186173 original size:82 final size:82
Alignment explanation
Indices: 186064--186594 Score: 547
Period size: 82 Copynumber: 6.5 Consensus size: 82
186054 TTTCTTTTCA
* * * *
186064 AAGTCCACAACTTCGTGGCATCTTTTTAAGTCCACAACTCTATGGCATCCTTTTAAAGTCCACCA
1 AAGTCCACAACTCCGTGGCACCCTTTTAAGTCCACAACTCTATGGCATCCTTTT-AAGTCCACAA
186129 CTCCGTGGCA-CCTTTTT
65 CTCCGTGGCATCCTTTTT
* * * * * *
186146 AAGTTCACAACTCCGTGGAATCCTTTTAAGTCCATAACTCTGTGGCATCCTTTTAAAGTACACAA
1 AAGTCCACAACTCCGTGGCACCCTTTTAAGTCCACAACTCTATGGCATCCTTTT-AAGTCCACAA
**
186211 CTCCACGGCA-CCTTTTT
65 CTCCGTGGCATCCTTTTT
* *
186228 AAAGTCCACAACTCCGTGGCACCCTTTTAAAGTCCACAACTCTGTGGCATCCTTTTAAGTCTACA
1 -AAGTCCACAACTCCGTGGCACCCTTTT-AAGTCCACAACTCTATGGCATCCTTTTAAGTCCACA
* * *
186293 ACTCCATGGCA-CCCTTTA
64 ACTCCGTGGCATCCTTTTT
** * * * *
186311 AAGTCCACAACTCTATGGCACCCTTTTAAAGTCCACCACTCTGTGGCA-CTTTTTTAAGTTCACA
1 AAGTCCACAACTCCGTGGCACCCTTTT-AAGTCCACAACTCTATGGCATC-CTTTTAAGTCCACA
*
186375 ACTCTGTGGCATCC-TTTT
64 ACTCCGTGGCATCCTTTTT
* * *
186393 AAGTCCACAACTCCGTGGCACCGTTTTAAGTCCACAACT-TCATGCCATCCATTTCAAGTCCACA
1 AAGTCCACAACTCCGTGGCACCCTTTTAAGTCCACAACTCT-ATGGCATCC-TTTTAAGTCCACA
* * *
186457 GCTCCGTGGCATTCTTTTA
64 ACTCCGTGGCATCCTTTTT
* * * * * * *
186476 AAGTCCACAATTCTGTGGCACCCTTTTAAGTACACCACTCCATGGCA-CTCTTTTAAGTCTAGAA
1 AAGTCCACAACTCCGTGGCACCCTTTTAAGTCCACAACTCTATGGCATC-CTTTTAAGTCCACAA
186540 CTCCGTGGCATCC-TTTT
65 CTCCGTGGCATCCTTTTT
* * * *
186557 AAGTCCACAACTTCGTGGTATCCTTTTTAAGCCCACAA
1 AAGTCCACAACTCCGTGGCA-CCCTTTTAAGTCCACAA
186595 GTCAGTGGCA
Statistics
Matches: 376, Mismatches: 62, Indels: 22
0.82 0.13 0.05
Matches are distributed among these distances:
80 1 0.00
81 35 0.09
82 223 0.59
83 91 0.24
84 26 0.07
ACGTcount: A:0.25, C:0.30, G:0.14, T:0.31
Consensus pattern (82 bp):
AAGTCCACAACTCCGTGGCACCCTTTTAAGTCCACAACTCTATGGCATCCTTTTAAGTCCACAAC
TCCGTGGCATCCTTTTT
Found at i:186602 original size:28 final size:28
Alignment explanation
Indices: 186544--186967 Score: 352
Period size: 28 Copynumber: 14.4 Consensus size: 28
186534 CTAGAACTCC
* * *
186544 GTGGCATCCTTT-TAAGTCCACAACTTC-
1 GTGGCATCCTTTCAAAGCCCACAA-GTCA
* **
186571 GTGGTATCCTTTTTAAGCCCACAAGTCA
1 GTGGCATCCTTTCAAAGCCCACAAGTCA
* *
186599 GTGGCACCCTTCCAAAGCCCGCACAAGTC-
1 GTGGCATCCTTTCAAAG-CC-CACAAGTCA
* *
186628 GCTGGCAACCCAATTCAAAGCCCACAAGTCA
1 G-TGGC-ATCC-TTTCAAAGCCCACAAGTCA
* * *
186659 GTGGCATCCTTCTCAAAGCCTACATAAATTA
1 GTGGCATCCTT-TCAAAGCC--CACAAGTCA
186690 GTGGCATCCTTTCAAAGCCCACAAGTCA
1 GTGGCATCCTTTCAAAGCCCACAAGTCA
*
186718 GTGGCATCCTTTCAAAGTCCACAAGTCA
1 GTGGCATCCTTTCAAAGCCCACAAGTCA
* *
186746 GTGGCATCCTTCTCAAAGCCCATAAGTTA
1 GTGGCATCCTT-TCAAAGCCCACAAGTCA
*
186775 GTGGCATCCTTCTCAAAGCCCACACAAGTCG
1 GTGGCATCCTT-TCAAAG-CC-CACAAGTCA
* *
186806 GTGGCAACTCTTTTCAAAGCCCACAAGTTA
1 GTGGC-A-TCCTTTCAAAGCCCACAAGTCA
*
186836 GTGGCATCTTTTCAAAAGCCCACAAGTCA
1 GTGGCATCCTTTC-AAAGCCCACAAGTCA
* * *
186865 GTGGCACCCTTTCAAACCCCATAAGTCA
1 GTGGCATCCTTTCAAAGCCCACAAGTCA
* *
186893 GTGCCATACCCTTTCAAAGCCCACATAAGTCG
1 GTGGCAT--CCTTTCAAAGCCCAC--AAGTCA
* * *
186925 GTGGTAACTCTTTTCAAAGCCCACATAAGTTA
1 GTGG-CA-TCCTTTCAAAGCCCAC--AAGTCA
186957 GTGGCA-CCTTT
1 GTGGCATCCTTT
186968 TTTTTAAAAG
Statistics
Matches: 329, Mismatches: 45, Indels: 44
0.79 0.11 0.11
Matches are distributed among these distances:
27 13 0.04
28 92 0.28
29 76 0.23
30 59 0.18
31 38 0.12
32 45 0.14
33 5 0.02
34 1 0.00
ACGTcount: A:0.28, C:0.30, G:0.17, T:0.25
Consensus pattern (28 bp):
GTGGCATCCTTTCAAAGCCCACAAGTCA
Found at i:186748 original size:147 final size:141
Alignment explanation
Indices: 186544--186966 Score: 395
Period size: 147 Copynumber: 2.9 Consensus size: 141
186534 CTAGAACTCC
* * * * **
186544 GTGGCATCCTTT-TAAGTCCACAACTTC-GTGGTATCCTTTTTAAGCCCACAAGTCAGTGGCACC
1 GTGGCATCCTTTCAAAGCCCACAA-GTCAGTGGCATCCTTTCAAAGCCCACAAGTCAGTGGCACC
* *
186607 CTTCCAAAGCCCGCACAAGTCGCTGGCAACCCAATTCAAAGCCCACAAGTCAGTGGCATCCTTCT
65 CTTCCAAAGCCC-CATAAGTCG-TGGCAACCC-TTTCAAAGCCCACAAGTCAGTGGCA-CCTTCT
*
186672 CAAAGCCTACATAAATTA
126 CAAAGCC--CACAAATTA
* *
186690 GTGGCATCCTTTCAAAGCCCACAAGTCAGTGGCATCCTTTCAAAGTCCACAAGTCAGTGGCATCC
1 GTGGCATCCTTTCAAAGCCCACAAGTCAGTGGCATCCTTTCAAAGCCCACAAGTCAGTGGCACCC
* * *
186755 TTCTCAAAG-CCCATAAGTTAGTGGC-ATCCTTCTCAAAGCCCACACAAGTCGGTGGCAACTCTT
66 TTC-CAAAGCCCCATAAG-TCGTGGCAACCCTT-TCAAAG-CC-CACAAGTCAGTGGC-AC-CTT
* *
186818 TTCAAAGCCCACAAGTTA
124 CTCAAAGCCCACAAATTA
* * * * *
186836 GTGGCATCTTTTCAAAAGCCCACAAGTCAGTGGCACCCTTTCAAACCCCATAAGTCAGTGCCATA
1 GTGGCATCCTTTC-AAAGCCCACAAGTCAGTGGCATCCTTTCAAAGCCCACAAGTCAGTGGC--A
* * * *
186901 CCCTTTCAAAGCCCACATAAGTCGGTGGTAACTCTTTTCAAAGCCCACATAAGTTAGTGGCACCT
63 CCCTTCCAAAGCCC-CATAAGTC-GTGGCAAC-CCTTTCAAAGCCCAC--AAGTCAGTGGCACCT
186966 T
123 T
186967 TTTTTTAAAA
Statistics
Matches: 228, Mismatches: 30, Indels: 35
0.78 0.10 0.12
Matches are distributed among these distances:
144 1 0.00
145 9 0.04
146 44 0.19
147 105 0.46
148 22 0.10
149 14 0.06
150 14 0.06
151 16 0.07
152 3 0.01
ACGTcount: A:0.28, C:0.30, G:0.17, T:0.24
Consensus pattern (141 bp):
GTGGCATCCTTTCAAAGCCCACAAGTCAGTGGCATCCTTTCAAAGCCCACAAGTCAGTGGCACCC
TTCCAAAGCCCCATAAGTCGTGGCAACCCTTTCAAAGCCCACAAGTCAGTGGCACCTTCTCAAAG
CCCACAAATTA
Found at i:186938 original size:119 final size:116
Alignment explanation
Indices: 186585--186967 Score: 450
Period size: 119 Copynumber: 3.2 Consensus size: 116
186575 TATCCTTTTT
* * *
186585 AAGCCCACAAGTCAGTGGCACCCTTCCAAAGCCCGCACAAGTC-GCTGGCAACCCAATTCAAAGC
1 AAGCCCACAAGTCAGTGGCATCCTTTCAAAG-CC-CACAAGTCAG-TGGC-ACCC-TTTCAAAGC
* * * ** * *
186649 CCACAAGTCAGTGGCATCCTTCTCAAAGCCTACATAAATTAGTGGCA-TCCTTTCA
61 CCATAAGTCAGTGGCATCCTTCTCAAAGCCCACATAAGTCGGTGGAACTCTTTTCA
* *
186704 AAGCCCACAAGTCAGTGGCATCCTTTCAAAGTCCACAAGTCAGTGGCATCCTTCTCAAAGCCCAT
1 AAGCCCACAAGTCAGTGGCATCCTTTCAAAGCCCACAAGTCAGTGGCACCCTT-TCAAAGCCCAT
* *
186769 AAGTTAGTGGCATCCTTCTCAAAGCCCACACAAGTCGGTGGCAACTCTTTTCA
65 AAGTCAGTGGCATCCTTCTCAAAGCCCACATAAGTCGGTGG-AACTCTTTTCA
* * *
186822 AAGCCCACAAGTTAGTGGCATCTTTTCAAAAGCCCACAAGTCAGTGGCACCCTTTCAAACCCCAT
1 AAGCCCACAAGTCAGTGGCATCCTTTC-AAAGCCCACAAGTCAGTGGCACCCTTTCAAAGCCCAT
*
186887 AAGTCAGTGCCATACCCTT-TCAAAGCCCACATAAGTCGGTGGTAACTCTTTTCA
65 AAGTCAGTGGCAT--CCTTCTCAAAGCCCACATAAGTCGGTGG-AACTCTTTTCA
*
186941 AAGCCCACATAAGTTAGTGGCA-CCTTT
1 AAGCCCAC--AAGTCAGTGGCATCCTTT
186968 TTTTTAAAAG
Statistics
Matches: 231, Mismatches: 24, Indels: 17
0.85 0.09 0.06
Matches are distributed among these distances:
115 1 0.00
116 48 0.21
117 13 0.06
118 55 0.24
119 94 0.41
120 8 0.03
121 12 0.05
ACGTcount: A:0.29, C:0.31, G:0.17, T:0.23
Consensus pattern (116 bp):
AAGCCCACAAGTCAGTGGCATCCTTTCAAAGCCCACAAGTCAGTGGCACCCTTTCAAAGCCCATA
AGTCAGTGGCATCCTTCTCAAAGCCCACATAAGTCGGTGGAACTCTTTTCA
Found at i:187912 original size:20 final size:20
Alignment explanation
Indices: 187830--187923 Score: 75
Period size: 20 Copynumber: 4.7 Consensus size: 20
187820 TTTTGGCCAG
**
187830 ATGTATCGATACAT-TGAAAA
1 ATGTATCGATACATGT-ATGA
**
187850 ATGTATCGATACATGCCTGA
1 ATGTATCGATACATGTATGA
* * * *
187870 TTTTATCGATACATACT-TCA
1 ATGTATCGATACAT-GTATGA
187890 ATGTATCGATACATGTATGA
1 ATGTATCGATACATGTATGA
*
187910 ATGTATCAATACAT
1 ATGTATCGATACAT
187924 TCTAGCTTTT
Statistics
Matches: 57, Mismatches: 14, Indels: 6
0.74 0.18 0.08
Matches are distributed among these distances:
19 1 0.02
20 56 0.98
ACGTcount: A:0.36, C:0.15, G:0.14, T:0.35
Consensus pattern (20 bp):
ATGTATCGATACATGTATGA
Found at i:193816 original size:111 final size:112
Alignment explanation
Indices: 193609--193825 Score: 255
Period size: 111 Copynumber: 1.9 Consensus size: 112
193599 AGGAACCTGA
* * *
193609 AAGAACATCAAATTTGTCTGATTTTCGAAGAAATTCATATTTTATACATTCGAATCCATTCGTGC
1 AAGAACATCAAACTTGTCTAATTTTCGAAGAAATTCATATTTTATACATTCGAATCCATTCATGC
* *
193674 CTAGGAAGATGGGGCACGTATCCTATGAGTTTTGAAATTTTAAGCGC
66 CTAGGAAAATGAGGCACGTATCCTATGAGTTTTGAAATTTTAAGCGC
* * *
193721 AAGAACATCAAACTTGTCTAATTTTTGAA-AAATTCATATTTTATATGA-TCTG-ATCCATTTAT
1 AAGAACATCAAACTTGTCTAATTTTCGAAGAAATTCATATTTTATA-CATTC-GAATCCATTCAT
* * * *
193783 GCTTAGGAAAATTAGGTATGTA-CC-ATGTTAGTTTTGAAATTTT
64 GCCTAGGAAAATGAGGCACGTATCCTATG--AGTTTTGAAATTTT
193826 TAGGCCAAGC
Statistics
Matches: 89, Mismatches: 12, Indels: 9
0.81 0.11 0.08
Matches are distributed among these distances:
109 3 0.03
110 2 0.02
111 56 0.63
112 28 0.31
ACGTcount: A:0.33, C:0.13, G:0.16, T:0.38
Consensus pattern (112 bp):
AAGAACATCAAACTTGTCTAATTTTCGAAGAAATTCATATTTTATACATTCGAATCCATTCATGC
CTAGGAAAATGAGGCACGTATCCTATGAGTTTTGAAATTTTAAGCGC
Found at i:194327 original size:37 final size:37
Alignment explanation
Indices: 194280--194364 Score: 152
Period size: 37 Copynumber: 2.3 Consensus size: 37
194270 CTTGCATTCA
*
194280 CATCATTTCATGCACATCTGCACTATTCGATAGCATT
1 CATCATTTCATGCACATCTGCACTATTAGATAGCATT
*
194317 CATTATTTCATGCACATCTGCACTATTAGATAGCATT
1 CATCATTTCATGCACATCTGCACTATTAGATAGCATT
194354 CATCATTTCAT
1 CATCATTTCAT
194365 ATGCATTTGT
Statistics
Matches: 45, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
37 45 1.00
ACGTcount: A:0.28, C:0.25, G:0.09, T:0.38
Consensus pattern (37 bp):
CATCATTTCATGCACATCTGCACTATTAGATAGCATT
Found at i:195205 original size:75 final size:74
Alignment explanation
Indices: 195129--195406 Score: 298
Period size: 75 Copynumber: 3.8 Consensus size: 74
195119 TATGTTTAGT
* *
195129 TTGTTTTTGTTGTTGATAAAATTGTAAAAACAACATATTCCCCATCATGTTCTTTTTCTTGAGCT
1 TTGTTTTAGTTGTTGATAAAATTGTAAAAACAACATATTCCCCATCATGTTCTTCTTCTTGAGCT
*
195194 TATTTTCAGT
66 TATTTTCA-A
* * *
195204 TTGTTTCAATTGTTGATAAAATTGTGAAAACAACATATAT-CCCATCATGTTCTTCTTCTTCG-G
1 TTGTTTTAGTTGTTGATAAAATTGTAAAAACAACATAT-TCCCCATCATGTTCTTCTTCTT-GAG
195267 CTTATTTTCAA
64 CTTATTTTCAA
* * * * * *
195278 TTGTTTTAGTTATTGATAAAACTTGTAAAAATAATATCTTCCCCATCATGTTCTGCTTC--AAGC
1 TTGTTTTAGTTGTTGATAAAA-TTGTAAAAACAACATATTCCCCATCATGTTCTTCTTCTTGAGC
* *
195341 -TGTTATCAA
65 TTATTTTCAA
* * * * *
195350 TT-TTTTGGTTTTTGATAAACATTTTAGAAATAACATATTCCCCATCATGTTCTTCTT
1 TTGTTTTAGTTGTTGATAAA-ATTGTAAAAACAACATATTCCCCATCATGTTCTTCTT
195407 TTTAAGGCCA
Statistics
Matches: 173, Mismatches: 24, Indels: 16
0.81 0.11 0.08
Matches are distributed among these distances:
71 46 0.27
72 10 0.06
73 2 0.01
74 19 0.11
75 94 0.54
76 2 0.01
ACGTcount: A:0.28, C:0.16, G:0.11, T:0.45
Consensus pattern (74 bp):
TTGTTTTAGTTGTTGATAAAATTGTAAAAACAACATATTCCCCATCATGTTCTTCTTCTTGAGCT
TATTTTCAA
Found at i:196304 original size:44 final size:43
Alignment explanation
Indices: 196241--196389 Score: 174
Period size: 44 Copynumber: 3.4 Consensus size: 43
196231 TTAGGCCGAC
*
196241 GTCAAACTTCTTTCACTATAGTTTGAAATGATGGTTCTACCCTG
1 GTCAAACTTCTTTCACTATAGTTTG-AATGATGGTTTTACCCTG
* * * *
196285 GTCAAACTCCTTTCACTATAGTTTGACATGTTGGTTTTGCCCTA
1 GTCAAACTTCTTTCACTATAGTTTGA-ATGATGGTTTTACCCTG
* * *
196329 GTCAAACTTTTTTCACCATAGTTTG-ATGTAGTGGTTTTGCCCTG
1 GTCAAACTTCTTTCACTATAGTTTGAATG-A-TGGTTTTACCCTG
*
196373 GTCAAACTTCGTTCACT
1 GTCAAACTTCTTTCACT
196390 TCCATTTGAT
Statistics
Matches: 89, Mismatches: 13, Indels: 6
0.82 0.12 0.06
Matches are distributed among these distances:
42 3 0.03
43 1 0.01
44 85 0.96
ACGTcount: A:0.21, C:0.21, G:0.17, T:0.40
Consensus pattern (43 bp):
GTCAAACTTCTTTCACTATAGTTTGAATGATGGTTTTACCCTG
Found at i:196398 original size:44 final size:44
Alignment explanation
Indices: 196241--196449 Score: 140
Period size: 44 Copynumber: 4.8 Consensus size: 44
196231 TTAGGCCGAC
* * * ** * *
196241 GTCAAACTTCTTTCACTATAGTTTGAAATGATGGTTCTACCCTG
1 GTCAAACTTCGTTCACCACAGTTTGATGTGATGGTTTTGCCCTG
* * * * ** * *
196285 GTCAAACTCCTTTCACTATAGTTTGACATGTTGGTTTTGCCCTA
1 GTCAAACTTCGTTCACCACAGTTTGATGTGATGGTTTTGCCCTG
** *
196329 GTCAAACTTTTTTCACCATAGTTTGATGT-AGTGGTTTTGCCCTG
1 GTCAAACTTCGTTCACCACAGTTTGATGTGA-TGGTTTTGCCCTG
* *
196373 GTCAAACTTCGTTCACTTC-CA-TTTGATGTGATGGTTTAGCCTTG
1 GTCAAACTTCGTTCAC--CACAGTTTGATGTGATGGTTTTGCCCTG
* *
196417 GTCAAAC-TCTTTTCATCCTC-GTTTGATGTGATG
1 GTCAAACTTC-GTTCA-CCACAGTTTGATGTGATG
196450 ACTCAGCCCT
Statistics
Matches: 138, Mismatches: 19, Indels: 16
0.80 0.11 0.09
Matches are distributed among these distances:
43 3 0.02
44 131 0.95
45 3 0.02
46 1 0.01
ACGTcount: A:0.20, C:0.21, G:0.18, T:0.41
Consensus pattern (44 bp):
GTCAAACTTCGTTCACCACAGTTTGATGTGATGGTTTTGCCCTG
Found at i:196398 original size:88 final size:87
Alignment explanation
Indices: 196241--196445 Score: 202
Period size: 88 Copynumber: 2.3 Consensus size: 87
196231 TTAGGCCGAC
* * *
196241 GTCAAACTTCTTTCACTATAGTTTGAAATG-ATGGTTCTACCCTGGTCAAACTCCTTTCACTATA
1 GTCAAACTTTTTTCACCATAGTTTG--ATGTATGGTTCTACCCTGGTCAAACTCCGTTCACTATA
* *
196305 GTTTGACATGTTGGTTTTGCCCTA
64 GTTTGACATGATGGTTTAGCCCTA
* * *
196329 GTCAAACTTTTTTCACCATAGTTTGATGTAGTGGTTTTGCCCTGGTCAAACTTCGTTCACT-TCC
1 GTCAAACTTTTTTCACCATAGTTTGATGTA-TGGTTCTACCCTGGTCAAACTCCGTTCACTAT--
** * *
196393 A-TTTGATGTGATGGTTTAGCCTTG
63 AGTTTGACATGATGGTTTAGCCCTA
* *
196417 GTCAAACTCTTTTCATCC-TCGTTTGATGT
1 GTCAAACTTTTTTCA-CCATAGTTTGATGT
196446 GATGACTCAG
Statistics
Matches: 98, Mismatches: 14, Indels: 10
0.80 0.11 0.08
Matches are distributed among these distances:
86 3 0.03
87 2 0.02
88 90 0.92
89 3 0.03
ACGTcount: A:0.20, C:0.21, G:0.18, T:0.41
Consensus pattern (87 bp):
GTCAAACTTTTTTCACCATAGTTTGATGTATGGTTCTACCCTGGTCAAACTCCGTTCACTATAGT
TTGACATGATGGTTTAGCCCTA
Found at i:196631 original size:41 final size:41
Alignment explanation
Indices: 196510--196638 Score: 127
Period size: 41 Copynumber: 3.2 Consensus size: 41
196500 TGTTGACTTG
* * *
196510 TCGGTTTCACCCTAGTTAACCCTTCTAACCTATTAGCTTTA
1 TCGGTTTCACCCTGGTTAACCCTTCTAACCCATTGGCTTTA
* ** ** **** *
196551 TCGATTTTGCCCTGGCCAA-CCTT-TAATTGGTTGACTTTA
1 TCGGTTTCACCCTGGTTAACCCTTCTAACCCATTGGCTTTA
196590 TCGGTTTCACCCTGGTTAACCCTTCTAACCCATTGGCTTTA
1 TCGGTTTCACCCTGGTTAACCCTTCTAACCCATTGGCTTTA
196631 TCGGTTTC
1 TCGGTTTC
196639 GCCTTAGCCA
Statistics
Matches: 64, Mismatches: 22, Indels: 4
0.71 0.24 0.04
Matches are distributed among these distances:
39 24 0.38
40 8 0.12
41 32 0.50
ACGTcount: A:0.18, C:0.28, G:0.15, T:0.40
Consensus pattern (41 bp):
TCGGTTTCACCCTGGTTAACCCTTCTAACCCATTGGCTTTA
Found at i:196699 original size:81 final size:80
Alignment explanation
Indices: 196527--196942 Score: 361
Period size: 81 Copynumber: 5.2 Consensus size: 80
196517 CACCCTAGTT
* * * * * *
196527 AACCCTTCTAACCTATTAGCTTTATCGATTTTGCCCTGGCCAACC-TTTAATTGGTTGACTTTAT
1 AACCTTTCTAACCCATTGGCTTTATCGGTTTCGCCCTAGCCAACCTTTTAATT-GTTGACTTTAT
* ** *
196591 CGGTTTCACCCTGGTT
65 CAGTTTTGCCCTGGTC
* * *
196607 AACCCTTCTAACCCATTGGCTTTATCGGTTTCGCCTTAGCCAACCTTTTAATTAGTTAACTTTAT
1 AACCTTTCTAACCCATTGGCTTTATCGGTTTCGCCCTAGCCAACCTTTTAATT-GTTGACTTTAT
*
196672 CAGTTTTGCCTTGGTC
65 CAGTTTTGCCCTGGTC
** * * *
196688 AATGTTTCTAACTCATTGGTTTTATGGGTTTCGCCCTAGCCAACCTTTTAATTGTTTGACTTTAT
1 AACCTTTCTAACCCATTGGCTTTATCGGTTTCGCCCTAGCCAACCTTTTAATTG-TTGACTTTAT
196753 CAGTTTTGCCCTGGTC
65 CAGTTTTGCCCTGGTC
* * * * * *
196769 AGCCCTTT-TAACCCATTGGCTTTATTGGTTTTGCCTTAGCCAACTTTTTAATTGGTTGATTTTA
1 A-ACCTTTCTAACCCATTGGCTTTATCGGTTTCGCCCTAGCCAACCTTTTAATT-GTTGACTTTA
** ** * *
196833 TTGGTTTAACTCTAGTC
64 TCAGTTTTGCCCTGGTC
** * * * * **
196850 AACCCTTT-TAACCTTTTGGCTTTATCGATTTTGCCTTGGTTAACCTTTTAATTGGTTGACTTTA
1 AA-CCTTTCTAACCCATTGGCTTTATCGGTTTCGCCCTAGCCAACCTTTTAATT-GTTGACTTTA
* **
196914 TTAGTTTCACCCTGGTC
64 TCAGTTTTGCCCTGGTC
*
196931 AACCCTTCTAAC
1 AACCTTTCTAAC
196943 TTGTTGCCCT
Statistics
Matches: 277, Mismatches: 53, Indels: 11
0.81 0.16 0.03
Matches are distributed among these distances:
80 44 0.16
81 229 0.83
82 4 0.01
ACGTcount: A:0.19, C:0.23, G:0.15, T:0.43
Consensus pattern (80 bp):
AACCTTTCTAACCCATTGGCTTTATCGGTTTCGCCCTAGCCAACCTTTTAATTGTTGACTTTATC
AGTTTTGCCCTGGTC
Found at i:196764 original size:40 final size:40
Alignment explanation
Indices: 196546--196934 Score: 183
Period size: 40 Copynumber: 9.7 Consensus size: 40
196536 AACCTATTAG
* * *
196546 CTTTATCGATTTTGCCCTGGCCAACC-TTTAATTGGTTGA
1 CTTTATCGGTTTTGCCCTGGTCAACCTTTTAATTGATTGA
** * * *** *
196585 CTTTATCGGTTTCACCCTGGTTAACCCTTCTAACCCATTGG
1 CTTTATCGGTTTTGCCCTGGTCAA-CCTTTTAATTGATTGA
* * * * *
196626 CTTTATCGGTTTCGCCTTAGCCAACCTTTTAATT-AGTTAA
1 CTTTATCGGTTTTGCCCTGGTCAACCTTTTAATTGA-TTGA
* * ** * * *
196666 CTTTATCAGTTTTGCCTTGGTCAATGTTTCTAACTCATTGG
1 CTTTATCGGTTTTGCCCTGGTCAACCTTT-TAATTGATTGA
* * * * * *
196707 TTTTATGGGTTTCGCCCTAGCCAACCTTTTAATTGTTTGA
1 CTTTATCGGTTTTGCCCTGGTCAACCTTTTAATTGATTGA
* * *** *
196747 CTTTATCAGTTTTGCCCTGGTCAGCCCTTTTAACCCATTGG
1 CTTTATCGGTTTTGCCCTGGTCA-ACCTTTTAATTGATTGA
* * * * * *
196788 CTTTATTGGTTTTGCCTTAGCCAACTTTTTAATTGGTTGA
1 CTTTATCGGTTTTGCCCTGGTCAACCTTTTAATTGATTGA
* * ** * * *
196828 TTTTATTGGTTTAACTCTAGTCAACCCTTTTAACCTT--TTGG
1 CTTTATCGGTTTTGCCCTGGTCAA-CCTTTTAA--TTGATTGA
* * * *
196869 CTTTATCGATTTTGCCTTGGTTAACCTTTTAATTGGTTGA
1 CTTTATCGGTTTTGCCCTGGTCAACCTTTTAATTGATTGA
** **
196909 CTTTATTAGTTTCACCCTGGTCAACC
1 CTTTATCGGTTTTGCCCTGGTCAACC
196935 CTTCTAACTT
Statistics
Matches: 247, Mismatches: 92, Indels: 21
0.69 0.26 0.06
Matches are distributed among these distances:
38 2 0.01
39 20 0.08
40 116 0.47
41 106 0.43
42 1 0.00
43 2 0.01
ACGTcount: A:0.18, C:0.22, G:0.16, T:0.44
Consensus pattern (40 bp):
CTTTATCGGTTTTGCCCTGGTCAACCTTTTAATTGATTGA
Found at i:196897 original size:162 final size:161
Alignment explanation
Indices: 196510--196942 Score: 494
Period size: 162 Copynumber: 2.7 Consensus size: 161
196500 TGTTGACTTG
* * * *
196510 TCGGTTTCACCCTAGTTAACCCTTCTAACCTATTAGCTTTATCGATTTTGCCCTGGCCAACC-TT
1 TCGGTTT-AACCTAGTCAACCCTTTTAACCTATTGGCTTTATCGATTTTGCCCTGGCCAACCTTT
* *
196574 TAATTGGTTGACTTTATCGGTTTCACCCTGGTTAACCCTTCTAACCCATTGGCTTTATCGGTTTC
65 TAATTGGTTGACTTTATCAGTTTCACCCTGGTCAACCCTTCTAACCCATTGGCTTTATCGGTTTC
196639 GCCTTAGCCAACCTTTTAATTAGTTAACTTTA
130 GCCTTAGCCAACCTTTTAATTAGTTAACTTTA
* ** * ** * * * * *
196671 TCAGTTTTGCCTTGGTCAA-TGTTTCTAA-CTCATTGGTTTTATGGGTTTCGCCCTAGCCAACCT
1 TCGGTTTAACC-TAGTCAACCCTTT-TAACCT-ATTGGCTTTATCGATTTTGCCCTGGCCAACCT
* ** * * *
196734 TTTAATTGTTTGACTTTATCAGTTTTGCCCTGGTCAGCCCTTTTAACCCATTGGCTTTATTGGTT
63 TTTAATTGGTTGACTTTATCAGTTTCACCCTGGTCAACCCTTCTAACCCATTGGCTTTATCGGTT
* * * * *
196799 TTGCCTTAGCCAACTTTTTAATTGGTTGATTTTA
128 TCGCCTTAGCCAACCTTTTAATTAGTTAACTTTA
* * * **
196833 TTGGTTTAACTCTAGTCAACCCTTTTAACCTTTTGGCTTTATCGATTTTGCCTTGGTTAACCTTT
1 TCGGTTTAAC-CTAGTCAACCCTTTTAACCTATTGGCTTTATCGATTTTGCCCTGGCCAACCTTT
*
196898 TAATTGGTTGACTTTATTAGTTTCACCCTGGTCAACCCTTCTAAC
65 TAATTGGTTGACTTTATCAGTTTCACCCTGGTCAACCCTTCTAAC
196943 TTGTTGCCCT
Statistics
Matches: 216, Mismatches: 49, Indels: 13
0.78 0.18 0.05
Matches are distributed among these distances:
160 6 0.03
161 39 0.18
162 165 0.76
163 6 0.03
ACGTcount: A:0.18, C:0.23, G:0.15, T:0.43
Consensus pattern (161 bp):
TCGGTTTAACCTAGTCAACCCTTTTAACCTATTGGCTTTATCGATTTTGCCCTGGCCAACCTTTT
AATTGGTTGACTTTATCAGTTTCACCCTGGTCAACCCTTCTAACCCATTGGCTTTATCGGTTTCG
CCTTAGCCAACCTTTTAATTAGTTAACTTTA
Found at i:198057 original size:164 final size:163
Alignment explanation
Indices: 197740--198039 Score: 417
Period size: 164 Copynumber: 1.8 Consensus size: 163
197730 TTTTTGGCAG
197740 GGTTTTTCTCGGTTCAAAATTTTTAATATTCATCAAATATCATCATTTAATTCATAGTAAATCAG
1 GGTTTTTCTCGGTTCAAAATTTTTAATATTCATCAAATATCATCATTTAATTCATAGTAAATCAG
* ** ***
197805 TTTTGAAAATTTTATTTAGTTTCCTAAGTTTTTTATTTTTTCCTTGAAATCTCTCTACTTTTGAA
66 TTTTGAAAATTTTATTTAGTTT-CTAAGTTTTTTATTTTTTCCTTGAAATCTCCCTAAATAAAAA
197870 ATACGGAGCTTGCTATCCATAAATATTTTCGAGA
130 ATACGGAGCTTGCTATCCATAAATATTTTCGAGA
* *
197904 GGTTTTTCTCTGTTCAAAATTTTTTATATTCATCAAATATCATCATTTAATTCATAGTAAATCAG
1 GGTTTTTCTCGGTTCAAAATTTTTAATATTCATCAAATATCATCATTTAATTCATAGTAAATCAG
*
197969 TTTTGAAAATTTTATTTA-TTT-TAAAGGTTTTTTTTTAATTTTTTCCTT-ATAATTTCCCTAGA
66 TTTTGAAAATTTTATTTAGTTTCT-AA-G---TTTTTT-ATTTTTTCCTTGA-AATCTCCCTA-A
198031 ATAAAAAAT
123 ATAAAAAAT
198040 CGAGTTTTTT
Statistics
Matches: 119, Mismatches: 9, Indels: 12
0.85 0.06 0.09
Matches are distributed among these distances:
161 1 0.01
162 2 0.02
163 4 0.03
164 81 0.68
166 7 0.06
167 19 0.16
168 5 0.04
ACGTcount: A:0.31, C:0.12, G:0.09, T:0.48
Consensus pattern (163 bp):
GGTTTTTCTCGGTTCAAAATTTTTAATATTCATCAAATATCATCATTTAATTCATAGTAAATCAG
TTTTGAAAATTTTATTTAGTTTCTAAGTTTTTTATTTTTTCCTTGAAATCTCCCTAAATAAAAAA
TACGGAGCTTGCTATCCATAAATATTTTCGAGA
Found at i:199018 original size:12 final size:12
Alignment explanation
Indices: 199001--199032 Score: 55
Period size: 12 Copynumber: 2.7 Consensus size: 12
198991 TTTTTAAAGC
199001 TTATTTATGATA
1 TTATTTATGATA
199013 TTATTTATGATA
1 TTATTTATGATA
*
199025 TTTTTTAT
1 TTATTTAT
199033 TTCTCTTAGG
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 19 1.00
ACGTcount: A:0.28, C:0.00, G:0.06, T:0.66
Consensus pattern (12 bp):
TTATTTATGATA
Found at i:206069 original size:165 final size:165
Alignment explanation
Indices: 205798--206179 Score: 386
Period size: 165 Copynumber: 2.3 Consensus size: 165
205788 TAATATATAT
* * * **
205798 AAAAAATTCAAAATTCAT-AAAATAAATTGAATTTCTCAAAACT-ATTTTAATGGGAGTTCAATG
1 AAAAAATCCAAAATTCATGAAAATGAATTAAATTT-TCAAAACTGA-TTTAATGAAAGTTCAATG
* * *
205861 ATAATATTAGATGAATTCTAAAAATTTTAGACCAAAGAAAATCCCCCCAG-AAATATTTATGAAA
64 ACAATATTAGATGAATTCTAAAAATTTTAAACCAAAGAAAAT-CCCCCAGAAAAAATTTATGAAA
*
205925 TAGAAAACT-CGATTTTTTAGGAAAAAAGGGA-TTTCAAAG
128 TAGAAAACTCCG-TTTTTCA--AAAAAAGGGAGTTTCAAAG
*
205964 -AAAAATCCAAAATTCATGAAAATGAATTAAATTTTCAAAACTGATTTAATGAAAGTTTAATGAC
1 AAAAAATCCAAAATTCATGAAAATGAATTAAATTTTCAAAACTGATTTAATGAAAGTTCAATGAC
* * ** *** * *
206028 ATTATTATAT-AGATTCTAAAAATTTTAAAATGAAA-AAAATCCCTTTGAAAAAATTTATGGAGT
66 AATATTAGATGA-ATTCTAAAAATTTT-AAACCAAAGAAAATCCCCCAGAAAAAATTTATGAAAT
* *
206091 AGAAAACTCCGTTTTTCAAAAATAGGGAGTTTCAAGG
129 AGAAAACTCCGTTTTTCAAAAAAAGGGAGTTTCAAAG
* * * *
206128 AAAAAATTCAAAAACTCATGAAAATGAA-CAAATTTTTGAAAACTGATTTAAT
1 AAAAAA-TCCAAAATTCATGAAAATGAATTAAA-TTTTCAAAACTGATTTAAT
206180 ATGAAATAAA
Statistics
Matches: 181, Mismatches: 25, Indels: 20
0.80 0.11 0.09
Matches are distributed among these distances:
163 9 0.05
164 12 0.07
165 101 0.56
166 59 0.33
ACGTcount: A:0.48, C:0.10, G:0.12, T:0.31
Consensus pattern (165 bp):
AAAAAATCCAAAATTCATGAAAATGAATTAAATTTTCAAAACTGATTTAATGAAAGTTCAATGAC
AATATTAGATGAATTCTAAAAATTTTAAACCAAAGAAAATCCCCCAGAAAAAATTTATGAAATAG
AAAACTCCGTTTTTCAAAAAAAGGGAGTTTCAAAG
Done.