Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold2170
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 45130
ACGTcount: A:0.34, C:0.16, G:0.19, T:0.31
Found at i:3536 original size:475 final size:473
Alignment explanation
Indices: 2253--5589 Score: 3939
Period size: 475 Copynumber: 7.1 Consensus size: 473
2243 TCATCAGATC
* *
2253 TTAATGAGGAGAATG-GTTTTATAGTGCCTAATCACAAAATGAATGAAGATCAATT-CTAGAACC
1 TTAATGAGGAGAATGTG-TTTATAGTGCCTAATCACAAAATGAATGAAGTTC-ATTACTAGAATC
* * *
2316 CATGTTTGGCTCATTTGAGGCACGAAGTTAGACTTTACAAAAATTGGTGGGAAGAAAGCC-TTTC
64 CATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGT-GGAAAAAAGCCTTTTC
* ** * *
2380 TTGCGAAACCAAAGCACCAACGTCGTGTATCCTAATGAGAAGACTATGTTTAAGGTGCCATATCT
128 -TGTGAAACCAAAGCACCAATATCGAGTATCCTAATGAGAAGACTATGTTTAAGGTGCCAAATCT
* * *
2445 TGAAAAGAAT-GGGAATAGTATAAGTATTCATGTTTACCTTATTTAAGAGACAAACTTTGATTCT
192 TGAAAAGAATGGGGAATAGTATGAGTATTCATGTCTGCCTTATTTAAGAGACAAACTTTGATTCT
* * * * ** **
2509 ATCAAAAATGGTGGAAGTAAAAGCTTTCCTTGCGACTCCAAAGGATCAATACCACATATCCTAAT
257 ATCAAAAACGGTGGAAGTAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAAT
* * * **
2574 GAATGGAATGTGTTTTTGGTTCCCAATCTTGAAAATATTAGAGATTGCTAAGAGAATCGATGCTT
322 GAA-GGAATGTGTTTTTGGTTCCCAATCTTGAAAATAATGGAGATTGTTACTAGAATCGATGCTT
* * *
2639 GTCATATTTAAGAGG-TGAACTTTGATTTTAAGTAAAATAGGGTAAAGAAACA-TTTTCCATGCA
386 GTCTTATTTAAG-GGATGAACTTTGATTTTAAGTAAAATAGGGCAAAGAAA-AGATTTCCATGCA
* * *
2702 AAAGAATATCAT-GAATATCGTTTA
449 AAAGAATATCATCAAATTTCATTTA
* * *
2726 TCATAATGAGGAGAATGTGTTTATAGTGCCTAAACACAAAATAAATGAAGTTCGTTACTAGAATC
1 T--TAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGTTCATTACTAGAATC
* * * * *
2791 CAGGTTTGTCTCATTCGAGGCACGAACTTAGACTTTAGAAAAATTAGTGGAAAAAAAGTC-TTTC
64 CATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGG-AAAAAAGCCTTTTC
** * * * *
2855 TTGTGAAACCAAAGTGCCGATATCGGGTATCCTAATGAGAATACTATGTTTAGGGTGCCAAATCT
128 -TGTGAAACCAAAGCACCAATATCGAGTATCCTAATGAGAAGACTATGTTTAAGGTGCCAAATCT
* * *
2920 TGAAAAGAATGGGGAATAGTTTGAGCATTCATGTCTGCCTTATTTAAGAGACAAACTTTAATTCT
192 TGAAAAGAATGGGGAATAGTATGAGTATTCATGTCTGCCTTATTTAAGAGACAAACTTTGATTCT
* * *
2985 ATCAAAAACGGTGGAAAG-AAAAGCTTTTCTTGCGACACCAAAGCACCAAGGCCATGTATCCTAA
257 ATCAAAAACGGTGG-AAGTAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAA
* *
3049 TGAAAGGAATGTGTTTTTGGTTCCCAATCTTGAAAAGAACGGAGATTGTTACTAGAATCGATGCT
321 TG-AAGGAATGTGTTTTTGGTTCCCAATCTTGAAAATAATGGAGATTGTTACTAGAATCGATGCT
* * * *
3114 TGTCTTATTTAAGGGATGAGCTTTGATTTTAAGTAAAATAGGGCGAAGAAATGATTTCCACGCAA
385 TGTCTTATTTAAGGGATGAACTTTGATTTTAAGTAAAATAGGGCAAAGAAAAGATTTCCATGCAA
**
3179 AAGAATATCA-CAAATTTTGTTTA
450 AAGAATATCATCAAATTTCATTTA
* * * *
3202 CTGTAATGCA-GAGAATGTGTTTGTAGTGCCTAAACACAAATTGAATGACGTTCATTACTAGAAT
1 -T-TAATG-AGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGTTCATTACTAGAAT
* * *
3266 CCATGTTTATCTCATTTGAGGCATGAACTTAAACTTTACAAAAATTGGTGGAAAAAAGCCTTTTC
63 CCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGAAAAAAGCCTTTTC
* * *
3331 TGTGAAACCAATGCACCAATATCGAGTATCCTAATGAGAAGACTATGTTTAAAGTGCCAAATCAT
128 TGTGAAACCAAAGCACCAATATCGAGTATCCTAATGAGAAGACTATGTTTAAGGTGCCAAATCTT
*
3396 GAAAAGAATGGGGAATAGTATGAGTATACATGTCTGCCTTATTTAAGAGACAAACTTTGATTCTA
193 GAAAAGAATGGGGAATAGTATGAGTATTCATGTCTGCCTTATTTAAGAGACAAACTTTGATTCTA
* * *
3461 TAAAAAACGATGGAAAG-AAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCTTGTATCCTAAT
258 TCAAAAACGGTGG-AAGTAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAAT
* * *** **
3525 GAAGAGAATGTGTTTTTGGATCCCAACCTTGAATCGAATGGAGATTGTTAGGAGAATCGATGCTT
322 GAAG-GAATGTGTTTTTGGTTCCCAATCTTGAAAATAATGGAGATTGTTACTAGAATCGATGCTT
* * *
3590 GTCTTATTTGAGGGATGAACTATGATATTAAGTAAAATAGGGCAAAGAAAAGATTTCCATGCAAA
386 GTCTTATTTAAGGGATGAACTTTGATTTTAAGTAAAATAGGGCAAAGAAAAGATTTCCATGCAAA
* * * *
3655 AGAAAATTATC-AATATCATTAATC
451 AGAATATCATCAAATTTCATT--TA
* * * * *
3679 TTATTAAGGAGAATGTGTTTATAGTGCCTAATTACAAAATGAATGAAGATT-AGTACTAGAACCC
1 TTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAG-TTCATTACTAGAATCC
* * * * * * * *
3743 ACGTTTGGCTCATTTGAAGCATGAACTTAGACTTTACAAAAATTAGTGAGGAACAAGCCTTTCCT
65 ATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTG-GAAAAAAGCCTTTTCT
* * ** * ** * * *
3808 GTGAAACCAGAGCATCAATATCTTGTA-CCTTATTGAGAAGACTATGTTTTTGGTGTCGAATCCT
129 GTGAAACCAAAGCACCAATATCGAGTATCC-TAATGAGAAGACTATGTTTAAGGTGCCAAATCTT
* * * *
3872 GAAAAGAA-AGGGAATTAGTATGAGTATTGATGTTTGCCTTATTTAAGAGACAAACTTTGATTCA
193 GAAAAGAATGGGGAA-TAGTATGAGTATTCATGTCTGCCTTATTTAAGAGACAAACTTTGATTCT
** **
3936 AT-GTATTC--T---AGTAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTGTATCCTA
257 ATCAAAAACGGTGGAAGTAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCA--TGTATCCTA
* * *
3995 ATGAATGGAATTTGTTTTTAGTTCCCAAT-TTGAAAATAATGGAGATTGTTACTAGAATTGATGC
320 ATGAA-GGAATGTGTTTTTGGTTCCCAATCTTGAAAATAATGGAGATTGTTACTAGAATCGATGC
* * * *
4059 TTGTCTTATTTAAAGGGATGAGCTTTGATTTTAAGTAATATAGGGCAAAGAAATGATTTCCACGC
384 TTGTCTTATTT-AAGGGATGAACTTTGATTTTAAGTAAAATAGGGCAAAGAAAAGATTTCCATGC
**
4124 AAAAGAATATCA-CAAATTTTGTTTA
448 AAAAGAATATCATCAAATTTCATTTA
* * *
4149 CTGTAATGCA-GAGAATGTGTTTGTAGTGCCTAAACACAAATTGAATGAAGTTCATTACTAGAAT
1 -T-TAATG-AGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGTTCATTACTAGAAT
* *
4213 CCATGTTTGTCTCATTTGAGGCATGAACTTAAACTTTACAAAAATTGGTGGAAAAAAGCCTTTTC
63 CCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGAAAAAAGCCTTTTC
* *
4278 TGTGAAACCAATGCACCAATATCGAGTATCCTAATGAGAAGACTATGTTTAAGGTGCTAAATCTT
128 TGTGAAACCAAAGCACCAATATCGAGTATCCTAATGAGAAGACTATGTTTAAGGTGCCAAATCTT
* * *
4343 GAAAAGAATGGGGAATAGTATGGGTATTCATGTCTACCTTATTTACGAGACAAACTTTGATTCTA
193 GAAAAGAATGGGGAATAGTATGAGTATTCATGTCTGCCTTATTTAAGAGACAAACTTTGATTCTA
* * * * *
4408 TCAAAAAAGGTGGAAGTAAAAGCTTTTCTTGCGACACCAAAGCTTCAATATCAAGTAACCTAATG
258 TCAAAAACGGTGGAAGTAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAATG
* * * *
4473 AATGGATTGTGTTTTTGCTTCCCAATCTTGAAAATAATGGTGATTGTTACTAGAATCGATGCTTA
323 AA-GGAATGTGTTTTTGGTTCCCAATCTTGAAAATAATGGAGATTGTTACTAGAATCGATGCTTG
* * *
4538 TCTTATTTAAGGGATGAACTTTGATATTATGTAAAATAGGGCAAAGAAAAGATTTCCGTGCAAAA
387 TCTTATTTAAGGGATGAACTTTGATTTTAAGTAAAATAGGGCAAAGAAAAGATTTCCATGCAAAA
* *
4603 GAA-ATCATC-AATATCATTAATC
452 GAATATCATCAAATTTCATT--TA
* * *
4625 TTGATGAGGAGAATGTGTTTATAGTGCCTAATCA-AAAATGAATGAAG-TCAATACTAGAACCCA
1 TTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGTTCATTACTAGAATCCA
* * * * * *
4688 TGTTTGGCTCATTTGAGGTACAAACTTAGACTTTACAAAAATTGCTGGGAAAAAGGCTTTTCTTG
66 TGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGAAAAAAGCCTTTTC-TG
* * ** * ** * * * * * *
4753 CGAAAGCAAAGCTGCAATATCGTGTATCCTTTTGAGAAGACTATGCTTATGGTGTCTAATCCTAA
130 TGAAACCAAAGCACCAATATCGAGTATCCTAATGAGAAGACTATGTTTAAGGTGCCAAATCTTGA
** * * * * *
4818 AAAGAAAAGGGATTAGTATGAGTGTTCATGTTTACCTTATTTAAGAGACAAGCTTTGATTCTATC
195 AAAGAATGGGGAATAGTATGAGTATTCATGTCTGCCTTATTTAAGAGACAAACTTTGATTCTATC
* * *
4883 AAAAATGGTGGAAGCAAAAGCTTTTC-T-----AGC---G-A--AATGTCATGTATCCTAATGAA
260 AAAAACGGTGGAAGTAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAATGAA
*
4936 TCGAATGTGTTTTTGGTTCCCAATCTTGAAAATAATGGAGATTGTTACTAGAATCGATGCTTGTC
325 -GGAATGTGTTTTTGGTTCCCAATCTTGAAAATAATGGAGATTGTTACTAGAATCGATGCTTGTC
* * ** * * *
5001 TTATTTAGGGGATGAACTTTGATTTTAAGTAAACTTCGACAAAGAAACGATTTCCAAGCAAAAGA
389 TTATTTAAGGGATGAACTTTGATTTTAAGTAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGA
*
5066 ATATCATC-AATGTCATTTA
454 ATATCATCAAATTTCATTTA
5085 TCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGTTCATTACTAGAATC
1 T--TAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGTTCATTACTAGAATC
* *
5150 CATGTTTATCTCATTTGAGGCACGAACTTAGACTTTACAGAAATTGGTGGTAAAAAAG-CTTTTC
64 CATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGG-AAAAAAGCCTTTT-
*
5214 CTGGGAAACCAAAGCACCAATATC-AGGTATCCTAATGAGAAGACTATGTTTAAGGTGCCAAATC
127 CTGTGAAACCAAAGCACCAATATCGA-GTATCCTAATGAGAAGACTATGTTTAAGGTGCCAAATC
* *
5278 TTGAAAAGAATGGGGAAT-GTATGAGTATTCATGTCTGCCATATTTAAGAGATAAACTTTGATTC
191 TTGAAAAGAATGGGGAATAGTATGAGTATTCATGTCTGCCTTATTTAAGAGACAAACTTTGATTC
* * * *
5342 TATCAAAAACAGTGGAAAG-AAAAGCTTTTCTTACGACACCAAAGCATCAATGTCATATATCCAA
256 TATCAAAAACGGTGG-AAGTAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTA
* * * * * *
5406 ATGAAGAGAATGTGTTTTTGGATCCCAATCTTGAAAAGAATGGAGATAGTCACGAGAATTGAT-C
320 ATGAAG-GAATGTGTTTTTGGTTCCCAATCTTGAAAATAATGGAGATTGTTACTAGAATCGATGC
* * * * * *
5470 ATTGTCTTATTTAAGGGAAGAACTTTGATTTTAGGGAAAATAAGGCAAAGAAAATATTTGCATGC
384 -TTGTCTTATTTAAGGGATGAACTTTGATTTTAAGTAAAATAGGGCAAAGAAAAGATTTCCATGC
* * *
5535 AAAA-AAAATCATC-AATATCATTAATC
448 AAAAGAATATCATCAAATTTCATT--TA
*
5561 TTATTGAGGAGAATGCT-TTTATAGTGCCT
1 TTAATGAGGAGAATG-TGTTTATAGTGCCT
5590 TTCTTGTGAA
Statistics
Matches: 2437, Mismatches: 354, Indels: 145
0.83 0.12 0.05
Matches are distributed among these distances:
460 2 0.00
461 134 0.05
462 46 0.02
463 77 0.03
464 130 0.05
465 7 0.00
467 2 0.00
469 4 0.00
470 36 0.01
471 159 0.07
472 265 0.11
473 151 0.06
474 89 0.04
475 793 0.33
476 497 0.20
477 45 0.02
ACGTcount: A:0.36, C:0.14, G:0.19, T:0.31
Consensus pattern (473 bp):
TTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGTTCATTACTAGAATCCA
TGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGAAAAAAGCCTTTTCTGT
GAAACCAAAGCACCAATATCGAGTATCCTAATGAGAAGACTATGTTTAAGGTGCCAAATCTTGAA
AAGAATGGGGAATAGTATGAGTATTCATGTCTGCCTTATTTAAGAGACAAACTTTGATTCTATCA
AAAACGGTGGAAGTAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAATGAAG
GAATGTGTTTTTGGTTCCCAATCTTGAAAATAATGGAGATTGTTACTAGAATCGATGCTTGTCTT
ATTTAAGGGATGAACTTTGATTTTAAGTAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAT
ATCATCAAATTTCATTTA
Found at i:4307 original size:947 final size:940
Alignment explanation
Indices: 2261--5589 Score: 4253
Period size: 947 Copynumber: 3.5 Consensus size: 940
2251 TCTTAATGAG
* * * *
2261 GAGAATG-GTTTTATAGTGCCTAATCACAAAATGAATGAAGATCAATT-CTAGAACCCATGTTTG
1 GAGAATGTG-TTTATAGTGCCTAAACACAAAATGAATGAAGTTC-ATTACTAGAATCCATGTTTA
* * * * *
2324 GCTCATTTGAGGCACGAAGTTAGACTTTACAAAAATTGGTGGGAAGAAAGCC-TTTCTTGCGAAA
64 TCTCATTTGAGGCACGAACTTAAACTTTACAAAAATTGGT-GGAAAAAAGCCTTTTC-TGTGAAA
** * *
2388 CCAAAGCACCAACGTCGTGTATCCTAATGAGAAGACTATGTTTAAGGTGCCATATCTTGAAAAGA
127 CCAAAGCACCAATATCGAGTATCCTAATGAGAAGACTATGTTTAAGGTGCCAAATCTTGAAAAGA
* * *
2453 AT-GGGAATAGTATAAGTATTCATGTTTACCTTATTTAAGAGACAAACTTTGATTCTATCAAAAA
192 ATGGGGAATAGTATGAGTATTCATGTCTACCTTATTTAAGAGACAAACTTTGATTCTATAAAAAA
* * * * * * *
2517 TGGTGGAAGTAAAAGCTTTCCTTGCGACTCCAAAGGATCAATACCACATATCCTAATGAATGGAA
257 CGATGGAAGTAAAAGCTTTTCTTGCGACACCAAAGCATCAATATCATATATCCTAATGAATGGAA
* * * * * * *
2582 TGTGTTTTTGGTTCCCAATCTTGAAAATATTAGAGATTGCTAAGAGAATCGATGCTTGTCATATT
322 TGTGTTTTTGGATCCCAATCTTGAAAAGAATGGAGATTGTTACGAGAATCGATGCTTGTCTTATT
* * * *
2647 TAAGAGG-TGAACTTTGATTTTAAGTAAAATAGGGTAAAGAAACA-TTTTCCATGCAAAAGAATA
387 TAAG-GGATGAACTTTGATATTAAGTAAAATAGGGCAAAGAAA-AGATTTCCATGCAAAAGAAAA
* * * * * * *
2710 TCATGAATATCGTTTATCATAATGAGGAGAATGTGTTTATAGTGCCTAAACACAAAATAAATGAA
450 TCATCAATATCATTAATCTTATTGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAA
* * * * * *
2775 GTTCGTTACTAGAATCCAGGTTTGTCTCATTCGAGGCACGAACTTAGACTTTAGAAAAATTAGTG
515 GTTAG-TACTAGAACCCACGTTTGGCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTAGTG
* * * * * *
2840 GAAAAAAAGTCTTTCTTGTGAAACCAAAG-TGCCGATATCGGGTATCC-TAATGAGAATACTATG
579 G-GAAAAAGCCTTTCTTGTGAAACCAAAGCT--CAATATCGTGTATCCTTATTGAGAAGACTATG
* * * * * * *
2903 TTTAGGGTGCCAAATCTTGAAAAGAATGGGGAA-TAGTTTGAGCATTCATGTCTGCCTTATTTAA
641 TTTATGGTGTCAAATCCTGAAAAGAA-AGGGAATTAGTATGAGTATTCATGTTTGCCTTATTTAA
* * **
2967 GAGACAAACTTTAATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCACC
705 GAGACAAACTTTGATTCAAT-AAATTC--T----AGAAAAGCTTTTCTTGCGACACCAAAGCA-C
* * * * *
3032 AAGGCCATGTATCCTAATGAAAGGAATGTGTTTTTGGTTCCCAATCTTGAAAAGAACGGAGATTG
762 AATGTCATGTATCCTAATGAATGGAATGTGTTTTTGGTTCCCAATCTTGAAAATAATGGAGATTG
*
3097 TTACTAGAATCGATGCTTGTCTTATTTAAGGGATGAGCTTTGATTTTAAGTAAAATAGGGCGAAG
827 TTACTAGAATCGATGCTTGTCTTATTTAAGGGATGAGCTTTGATTTTAAGT-AAATAGGGCAAAG
3162 AAATGATTTCCACGCAAAAGAATATCACAAATTTTGTTTACTGTAATGCA
891 AAATGATTTCCACGCAAAAGAATATCACAAATTTTGTTTACTGTAATGCA
* * *
3212 GAGAATGTGTTTGTAGTGCCTAAACACAAATTGAATGACGTTCATTACTAGAATCCATGTTTATC
1 GAGAATGTGTTTATAGTGCCTAAACACAAAATGAATGAAGTTCATTACTAGAATCCATGTTTATC
*
3277 TCATTTGAGGCATGAACTTAAACTTTACAAAAATTGGTGGAAAAAAGCCTTTTCTGTGAAACCAA
66 TCATTTGAGGCACGAACTTAAACTTTACAAAAATTGGTGGAAAAAAGCCTTTTCTGTGAAACCAA
* * *
3342 TGCACCAATATCGAGTATCCTAATGAGAAGACTATGTTTAAAGTGCCAAATCATGAAAAGAATGG
131 AGCACCAATATCGAGTATCCTAATGAGAAGACTATGTTTAAGGTGCCAAATCTTGAAAAGAATGG
* *
3407 GGAATAGTATGAGTATACATGTCTGCCTTATTTAAGAGACAAACTTTGATTCTATAAAAAACGAT
196 GGAATAGTATGAGTATTCATGTCTACCTTATTTAAGAGACAAACTTTGATTCTATAAAAAACGAT
* * *
3472 GGAAAG-AAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCTTGTATCCTAATGAA-GAGAATG
261 GG-AAGTAAAAGCTTTTCTTGCGACACCAAAGCATCAATATCATATATCCTAATGAATG-GAATG
* ** * *
3535 TGTTTTTGGATCCCAACCTTGAATCGAATGGAGATTGTTAGGAGAATCGATGCTTGTCTTATTTG
324 TGTTTTTGGATCCCAATCTTGAAAAGAATGGAGATTGTTACGAGAATCGATGCTTGTCTTATTTA
* *
3600 AGGGATGAACTATGATATTAAGTAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATTAT
389 AGGGATGAACTTTGATATTAAGTAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCAT
* *
3665 CAATATCATTAATCTTATTAAGGAGAATGTGTTTATAGTGCCTAATTACAAAATGAATGAAGATT
454 CAATATCATTAATCTTATTGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAG-TT
* *
3730 AGTACTAGAACCCACGTTTGGCTCATTTGAAGCATGAACTTAGACTTTACAAAAATTAGTGAGGA
518 AGTACTAGAACCCACGTTTGGCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTAGTG-GGA
* * * * *
3795 ACAAGCCTTTCCTGTGAAACCAGAGCATCAATATCTTGTA-CCTTATTGAGAAGACTATGTTTTT
582 AAAAGCCTTTCTTGTGAAACCAAAGC-TCAATATCGTGTATCCTTATTGAGAAGACTATGTTTAT
* *
3859 GGTGTCGAATCCTGAAAAGAAAGGGAATTAGTATGAGTATTGATGTTTGCCTTATTTAAGAGACA
646 GGTGTCAAATCCTGAAAAGAAAGGGAATTAGTATGAGTATTCATGTTTGCCTTATTTAAGAGACA
**
3924 AACTTTGATTCAATGTATTCTAGTAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTGT
711 AACTTTGATTCAATAAATTCTAG-AAAAGCTTTTCTTGCGACACCAAAGCA-CAATGTCA--TGT
* *
3989 ATCCTAATGAATGGAATTTGTTTTTAGTTCCCAAT-TTGAAAATAATGGAGATTGTTACTAGAAT
772 ATCCTAATGAATGGAATGTGTTTTTGGTTCCCAATCTTGAAAATAATGGAGATTGTTACTAGAAT
*
4053 TGATGCTTGTCTTATTTAAAGGGATGAGCTTTGATTTTAAGTAATATAGGGCAAAGAAATGATTT
837 CGATGCTTGTCTTATTT-AAGGGATGAGCTTTGATTTTAAGTAA-ATAGGGCAAAGAAATGATTT
4118 CCACGCAAAAGAATATCACAAATTTTGTTTACTGTAATGCA
900 CCACGCAAAAGAATATCACAAATTTTGTTTACTGTAATGCA
* * *
4159 GAGAATGTGTTTGTAGTGCCTAAACACAAATTGAATGAAGTTCATTACTAGAATCCATGTTTGTC
1 GAGAATGTGTTTATAGTGCCTAAACACAAAATGAATGAAGTTCATTACTAGAATCCATGTTTATC
*
4224 TCATTTGAGGCATGAACTTAAACTTTACAAAAATTGGTGGAAAAAAGCCTTTTCTGTGAAACCAA
66 TCATTTGAGGCACGAACTTAAACTTTACAAAAATTGGTGGAAAAAAGCCTTTTCTGTGAAACCAA
* *
4289 TGCACCAATATCGAGTATCCTAATGAGAAGACTATGTTTAAGGTGCTAAATCTTGAAAAGAATGG
131 AGCACCAATATCGAGTATCCTAATGAGAAGACTATGTTTAAGGTGCCAAATCTTGAAAAGAATGG
* * *
4354 GGAATAGTATGGGTATTCATGTCTACCTTATTTACGAGACAAACTTTGATTCTATCAAAAAA-GG
196 GGAATAGTATGAGTATTCATGTCTACCTTATTTAAGAGACAAACTTTGATTCTAT-AAAAAACGA
* * *
4418 TGGAAGTAAAAGCTTTTCTTGCGACACCAAAGCTTCAATATCA-AGTAACCTAATGAATGGATTG
260 TGGAAGTAAAAGCTTTTCTTGCGACACCAAAGCATCAATATCATA-TATCCTAATGAATGGAATG
** * * * *
4482 TGTTTTTGCTTCCCAATCTTGAAAATAATGGTGATTGTTACTAGAATCGATGCTTATCTTATTTA
324 TGTTTTTGGATCCCAATCTTGAAAAGAATGGAGATTGTTACGAGAATCGATGCTTGTCTTATTTA
* *
4547 AGGGATGAACTTTGATATTATGTAAAATAGGGCAAAGAAAAGATTTCCGTGCAAAAG-AAATCAT
389 AGGGATGAACTTTGATATTAAGTAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCAT
*
4611 CAATATCATTAATCTTGA-TGAGGAGAATGTGTTTATAGTGCCTAATCA-AAAATGAATGAAGTC
454 CAATATCATTAATCTT-ATTGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGTT
* * * *
4674 AATACTAGAACCCATGTTTGGCTCATTTGAGGTACAAACTTAGACTTTACAAAAATT-GCTGGGA
518 AGTACTAGAACCCACGTTTGGCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTAG-TGGGA
* * * *
4738 AAAAGGCTTTTCTTGCGAAAGCAAAGCTGCAATATCGTGTATCCTT-TTGAGAAGACTATGCTTA
582 AAAA-GCCTTTCTTGTGAAACCAAAGCT-CAATATCGTGTATCCTTATTGAGAAGACTATGTTTA
* * * *
4802 TGGTGTCTAATCCTAAAAAGAAAAGGG-ATTAGTATGAGTGTTCATGTTTACCTTATTTAAGAGA
645 TGGTGTCAAATCCTGAAAAG-AAAGGGAATTAGTATGAGTATTCATGTTTGCCTTATTTAAGAGA
* * ** *
4866 CAAGCTTTGATTCTATCAAAAATGGTGGAAGCAAAAGCTTTTC-T-----AGC---G-A-AATGT
709 CAAACTTTGATTC-A--ATAAAT--T-CTAG-AAAAGCTTTTCTTGCGACACCAAAGCACAATGT
*
4920 CATGTATCCTAATGAATCGAATGTGTTTTTGGTTCCCAATCTTGAAAATAATGGAGATTGTTACT
767 CATGTATCCTAATGAATGGAATGTGTTTTTGGTTCCCAATCTTGAAAATAATGGAGATTGTTACT
* * ** * *
4985 AGAATCGATGCTTGTCTTATTTAGGGGATGAACTTTGATTTTAAGTAAACTTCGACAAAGAAACG
832 AGAATCGATGCTTGTCTTATTTAAGGGATGAGCTTTGATTTTAAGTAAA-TAGGGCAAAGAAATG
* * ** *
5050 ATTTCCAAGCAAAAGAATATCATC-AATGTCATTTA-TCCTAATG-A
896 ATTTCCACGCAAAAGAATATCA-CAAATTTTGTTTACT-GTAATGCA
*
5094 GGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGTTCATTACTAGAATCCATGTTTAT
1 -GAGAATGTGTTTATAGTGCCTAAACACAAAATGAATGAAGTTCATTACTAGAATCCATGTTTAT
* * *
5159 CTCATTTGAGGCACGAACTTAGACTTTACAGAAATTGGTGGTAAAAAAG-CTTTTCCTGGGAAAC
65 CTCATTTGAGGCACGAACTTAAACTTTACAAAAATTGGTGG-AAAAAAGCCTTTT-CTGTGAAAC
5223 CAAAGCACCAATATC-AGGTATCCTAATGAGAAGACTATGTTTAAGGTGCCAAATCTTGAAAAGA
128 CAAAGCACCAATATCGA-GTATCCTAATGAGAAGACTATGTTTAAGGTGCCAAATCTTGAAAAGA
* * * *
5287 ATGGGGAAT-GTATGAGTATTCATGTCTGCCATATTTAAGAGATAAACTTTGATTCTATCAAAAA
192 ATGGGGAATAGTATGAGTATTCATGTCTACCTTATTTAAGAGACAAACTTTGATTCTATAAAAAA
* * *
5351 C-AGTGGAAAG-AAAAGCTTTTCTTACGACACCAAAGCATCAATGTCATATATCCAAATGAA-GA
257 CGA-TGG-AAGTAAAAGCTTTTCTTGCGACACCAAAGCATCAATATCATATATCCTAATGAATG-
* * *
5413 GAATGTGTTTTTGGATCCCAATCTTGAAAAGAATGGAGATAGTCACGAGAATTGAT-CATTGTCT
319 GAATGTGTTTTTGGATCCCAATCTTGAAAAGAATGGAGATTGTTACGAGAATCGATGC-TTGTCT
* * * * * * *
5477 TATTTAAGGGAAGAACTTTGATTTTAGGGAAAATAAGGCAAAGAAAATATTTGCATGCAAAA-AA
383 TATTTAAGGGATGAACTTTGATATTAAGTAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAA
5541 AATCATCAATATCATTAATCTTATTGAGGAGAATGCT-TTTATAGTGCCT
448 AATCATCAATATCATTAATCTTATTGAGGAGAATG-TGTTTATAGTGCCT
5590 TTCTTGTGAA
Statistics
Matches: 2104, Mismatches: 222, Indels: 119
0.86 0.09 0.05
Matches are distributed among these distances:
935 11 0.01
936 450 0.21
937 135 0.06
938 7 0.00
940 1 0.00
941 1 0.00
943 8 0.00
944 166 0.08
945 57 0.03
946 98 0.05
947 524 0.25
948 8 0.00
949 2 0.00
950 105 0.05
951 522 0.25
952 8 0.00
953 1 0.00
ACGTcount: A:0.36, C:0.14, G:0.19, T:0.31
Consensus pattern (940 bp):
GAGAATGTGTTTATAGTGCCTAAACACAAAATGAATGAAGTTCATTACTAGAATCCATGTTTATC
TCATTTGAGGCACGAACTTAAACTTTACAAAAATTGGTGGAAAAAAGCCTTTTCTGTGAAACCAA
AGCACCAATATCGAGTATCCTAATGAGAAGACTATGTTTAAGGTGCCAAATCTTGAAAAGAATGG
GGAATAGTATGAGTATTCATGTCTACCTTATTTAAGAGACAAACTTTGATTCTATAAAAAACGAT
GGAAGTAAAAGCTTTTCTTGCGACACCAAAGCATCAATATCATATATCCTAATGAATGGAATGTG
TTTTTGGATCCCAATCTTGAAAAGAATGGAGATTGTTACGAGAATCGATGCTTGTCTTATTTAAG
GGATGAACTTTGATATTAAGTAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCA
ATATCATTAATCTTATTGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGTTAGT
ACTAGAACCCACGTTTGGCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTAGTGGGAAAAA
GCCTTTCTTGTGAAACCAAAGCTCAATATCGTGTATCCTTATTGAGAAGACTATGTTTATGGTGT
CAAATCCTGAAAAGAAAGGGAATTAGTATGAGTATTCATGTTTGCCTTATTTAAGAGACAAACTT
TGATTCAATAAATTCTAGAAAAGCTTTTCTTGCGACACCAAAGCACAATGTCATGTATCCTAATG
AATGGAATGTGTTTTTGGTTCCCAATCTTGAAAATAATGGAGATTGTTACTAGAATCGATGCTTG
TCTTATTTAAGGGATGAGCTTTGATTTTAAGTAAATAGGGCAAAGAAATGATTTCCACGCAAAAG
AATATCACAAATTTTGTTTACTGTAATGCA
Found at i:9166 original size:476 final size:475
Alignment explanation
Indices: 6011--9165 Score: 3984
Period size: 476 Copynumber: 6.6 Consensus size: 475
6001 TGTACAAACA
* * **
6011 TAGACTTTACCAAAATTGGT-GGGAAGAAAGCTTTTCTTGCGAAACCAAAGCACCAATATCATGT
1 TAGACTTTACAAAAATTGGTGGGGAA-AAAGCCTTTCTTGCGAAACCAAAGCACCAATATCGGGT
* * * * *
6075 ATGCTATTGAGAAGACTATGTTTATGGTGTCTAATCTTGAAAAGAAAGGGGATTAGTATGAGTTT
65 ATCCTA-TGAGAAGACTATGTTTATGGTGTCAAATCTTGAAAAGAATGGGGAATAGTATGAGTAT
* * *
6140 TCATGTTTGTCTTATTTAAGAGACAAACTTTAATTCTATCAAAAATGGTGG-AAGTAAAAGCTTT
129 TCATGTCTGCCTTATTTAAGAGACAAACTTTGATTCTATCAAAAATGGTGGAAAG-AAAAGCTTT
* * * * * *
6204 TCTTGCGACACCAAAGCACCAATGTCACGTATCCTATTGAATGGAACGTGTTTTTGGTTCCCAAT
193 TCTTGTGACACCAAAGCAGCAATGTCATGTATCCTAATGAATGGAATGTGTTTTTGGATCCCAAT
*
6269 CTTGAAAATG-ATGGAGATTGTTACTAGAATCGATGCTTGTCTTATTTAGGGGATGAACTTTGAT
258 CTTGAAAA-GAATGGAGATTGTTACTAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGAT
* * *** * * *
6333 TTTAAGTAAAATAGGGCAAAGAAATGATTTCCAAGCAAAAGAACGCCATCGATATCATTTATCCT
322 TTTAAGTAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAATATCATCAATATCATTAATCTT
* * * *
6398 AATGAGGAGAATGTGTTTATAGTGCCTAATCATAAAAAGAATGAAGTTCATTACTAGAATCCATG
387 AATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCACG
**
6463 TTTGTATCATTTGAGGCATGAACT
452 TTTGGCTCATTTGAGGCATGAACT
* * * *
6487 TAGACTTTACAAAAATTGGT-GGAAAAAAGCCATTCTTGTGAAACCAACGCACCAATATCGGGTA
1 TAGACTTTACAAAAATTGGTGGGGAAAAAGCCTTTCTTGCGAAACCAAAGCACCAATATCGGGTA
* *
6551 TCCTAATGAGAAGACTATGTTTAAGGTGCCAAATCTTGAAAAGAATGGGGAATAGTATGAGTATT
66 TCCT-ATGAGAAGACTATGTTTATGGTGTCAAATCTTGAAAAGAATGGGGAATAGTATGAGTATT
* * * *
6616 CATGTCTACCTTATTTAAGAGAGAAACTTTGATTCTATCCAAAACGGTGGAAAGAAAAGCTTTTC
130 CATGTCTGCCTTATTTAAGAGACAAACTTTGATTCTATCAAAAATGGTGGAAAGAAAAGCTTTTC
** * * *
6681 TTGCAACACAAAAGCAGCAATGTCATGTATCCTAATGAA-GATAATGTGTTTTTGGAACCCTAAT
195 TTGTGACACCAAAGCAGCAATGTCATGTATCCTAATGAATG-GAATGTGTTTTTGGATCCC-AAT
* * * *
6745 CTTGAAAAGAATGGAGATTGTCACAAGAATCGATGCTTGTCTTATTTAAGGGATGAACTATGATA
258 CTTGAAAAGAATGGAGATTGTTACTAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATT
* *
6810 TTATGTAAAATAGGGCAAAGAAAAGA-TTCCATGCAAAAGAA-ATCATCAAAATCATTAATCTTA
323 TTAAGTAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAATATCATCAATATCATTAATCTTA
* * *
6873 ATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCACTACTAGAAGCCACAT
388 ATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCACGT
*
6938 TTGGCTCATTTGTGGCATGAACT
453 TTGGCTCATTTGAGGCATGAACT
* * * ** * * * * * ***
6961 TTGACTTTGCAAAAATTAGTAAGGAATAAGCCTTTCCTGTGAAACGAAAGCATCAATATCTTCTA
1 TAGACTTTACAAAAATTGGTGGGGAAAAAGCCTTTCTTGCGAAACCAAAGCACCAATATCGGGTA
* * * * * * * *
7026 TCCTATTGAGAAGACTATGTTTTTGGTGTCTAATCCTGGAAAGAAAGAGGATTAGTATGAATATT
66 TCCTA-TGAGAAGACTATGTTTATGGTGTCAAATCTTGAAAAGAATGGGGAATAGTATGAGTATT
* * * *
7091 CAT-TTTTCTCTTATTTAAGAGGCAAACTTTGATTCTATTAAAAATGGTGG-AAGTAAAAGCTTT
130 CATGTCTGC-CTTATTTAAGAGACAAACTTTGATTCTATCAAAAATGGTGGAAAG-AAAAGCTTT
* * * *
7154 TCTTGTGACACGAAAGCATC-A-GTCATGTATCCTAATGAATGGAATTTGTTTTTGGTTCCCAAT
193 TCTTGTGACACCAAAGCAGCAATGTCATGTATCCTAATGAATGGAATGTGTTTTTGGATCCCAAT
* * * *
7217 CTTGAAAATAATGGAGATTGTTACTAGAATTGGTGCTTGTCTTATTTAAGGGATGAACTTTAATT
258 CTTGAAAAGAATGGAGATTGTTACTAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATT
*
7282 TTAAGTAAAATAGGGCAAAGAAAAGA-TTCCATGCAAAAGAA-ATCATCAATATCATTAAACTTA
323 TTAAGTAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAATATCATCAATATCATTAATCTTA
* * * *
7345 ATGAGGAGAATGTGTTTATAGTGCCTAATCATAAAATGAATGAAGATCAATACTAAAACCCACGT
388 ATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCACGT
7410 TTGGCTCATTTGAGGCATGAACT
453 TTGGCTCATTTGAGGCATGAACT
* * * * * * * * **
7433 TAGACTTTACAAACATTGTTAGGGAACAGGCCTTTCCTGTGAAACCAAAGCATCAATATCTTGTA
1 TAGACTTTACAAAAATTGGTGGGGAAAAAGCCTTTCTTGCGAAACCAAAGCACCAATATCGGGTA
* * * * * * *
7498 TCCTATTAGGAAGACTATGTTTTTGGTGTCTAATCCTGAAAAGAAAGGGGATTAGTATGAGCATT
66 TCCTATGA-GAAGACTATGTTTATGGTGTCAAATCTTGAAAAGAATGGGGAATAGTATGAGTATT
* * *
7563 CATGTTTGTCTTATTTAAAAGACAAACTTTGATTCTATCAAAAATGGTGG-AAGTAAAAGCTTTT
130 CATGTCTGCCTTATTTAAGAGACAAACTTTGATTCTATCAAAAATGGTGGAAAG-AAAAGCTTTT
* * * * * * * **
7627 CTTATGACACGAAAGTAGCAATGTCATGTATCCTAATAAATGGAATTTGTTTTTCGTTAACAATC
194 CTTGTGACACCAAAGCAGCAATGTCATGTATCCTAATGAATGGAATGTGTTTTTGGATCCCAATC
* * *
7692 TTGAAAATAATGGAGATTGTTACTAGAATTGATGCTTGTCTTATTTAAGGGATGAACTTTAATTT
259 TTGAAAAGAATGGAGATTGTTACTAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTT
* * *
7757 TAAGTAAAATAGGGCAAA-AAAATGATTTCCATGCAAAAGAATACCATCAATATCATTTATCTGA
324 TAAGTAAAATAGGGCAAAGAAAA-GATTTCCATGCAAAAGAATATCATCAATATCATTAATCTTA
* * * **
7821 ATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAGTGAAGTTCATTACTAGAATCTATAT
388 ATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCACGT
* * *
7886 TTGTCTCCTTTGAGGCACGAACT
453 TTGGCTCATTTGAGGCATGAACT
* ** * *
7909 TAGAGTTTACAAAAATTGGTGGAAAAAAAGCC-TTCTTGAGAAACCAAAGCACCAATATCGGGCA
1 TAGACTTTACAAAAATTGGTGGGGAAAAAGCCTTTCTTGCGAAACCAAAGCACCAATATCGGGTA
* * *
7973 TCCTAATGAGAATACTATGTTTAAGGAG-CTAAATCTTGAAAAGAATGGGGAATAGTATGAGTAT
66 TCCT-ATGAGAAGACTATGTTTATGGTGTC-AAATCTTGAAAAGAATGGGGAATAGTATGAGTAT
* * * * *
8037 TCATGTCTGCTTTATTTAAGAGATAAACTTTGATTCTATAAAAAACGGTGGAAAGAGAAGCTTTT
129 TCATGTCTGCCTTATTTAAGAGACAAACTTTGATTCTATCAAAAATGGTGGAAAGAAAAGCTTTT
* * * * *
8102 CTTGTGACACCCAAGCATCAATGTCATGTATCCTAATGAATGGAATGTTTTTTTGGATTCGAATC
194 CTTGTGACACCAAAGCAGCAATGTCATGTATCCTAATGAATGGAATGTGTTTTTGGATCCCAATC
*
8167 TTGAAAACAATGGAGATTGTTACTAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTT
259 TTGAAAAGAATGGAGATTGTTACTAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTT
* * *
8232 TAAGTAAAATAGGGCAAAGAAACA-ATTTCCAAGCAAAAGAATATCATCAATATCATTTATCCTA
324 TAAGTAAAATAGGGCAAAGAAA-AGATTTCCATGCAAAAGAATATCATCAATATCATTAATCTTA
* ** *
8296 AAGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAACTTCATTACTAGAATCCATGT
388 ATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCACGT
* ** *
8361 TTGTCTCATTTGAGGCACAAACC
453 TTGGCTCATTTGAGGCATGAACT
** * * * * *
8384 TAGACTTTACAAAAATTGGTGGAAAAAAAGCATTTTTTGCGAAATCAAAGCAACAATATTGGGTA
1 TAGACTTTACAAAAATTGGTGGGGAAAAAGCCTTTCTTGCGAAACCAAAGCACCAATATCGGGTA
* * *
8449 TCCTAATGAGAAGACTATGTTTTTGGTG-CGAAATCTTGAATAGAATGTGGAATAGTATGAGTAT
66 TCCT-ATGAGAAGACTATGTTTATGGTGTC-AAATCTTGAAAAGAATGGGGAATAGTATGAGTAT
* * * *
8513 TCATGTCTGCCTTATTTAAGAGACAAACTTTGATTCTATCCAAAACGGTGGAATGCAAAGCTTTT
129 TCATGTCTGCCTTATTTAAGAGACAAACTTTGATTCTATCAAAAATGGTGGAAAGAAAAGCTTTT
* * *
8578 CTTGTGACACCAAAGCATCAATGTCATGTATCCAAATGAA-GACAATGTGTTTTTGGATCCCAAT
194 CTTGTGACACCAAAGCAGCAATGTCATGTATCCTAATGAATG-GAATGTGTTTTTGGATCCCAAT
* * * *
8642 CTTGAAAAGAATGGAGATTGTTA-TGAGAATTGATGCTTGCCTTATTTATGGGATGAACTATGAT
258 CTTGAAAAGAATGGAGATTGTTACT-AGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGAT
** *
8706 ACTAAGTAAAATAGGGCAAAGAAAAGATTTTCCATGCAAAAGAA-ATCAACAATATCATTAATCT
322 TTTAAGTAAAATAGGGCAAAGAAAAGA-TTTCCATGCAAAAGAATATCATCAATATCATTAATCT
* * * *
8770 TAGT-AGAGAGAATGTGTTTATAGTGCCTAATCACAAAATAAATGAAGATCAATACTAGAACCCA
386 TAATGAG-GAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCA
8834 CGTTTGGCTCATTTGAGGCATGAACT
450 CGTTTGGCTCATTTGAGGCATGAACT
* * * *
8860 TAGACTTTAAAAAAATTAGTGGGGAACAAGCCTTTCTTGCGAAACCAACA-CACCAATGTCGGGT
1 TAGACTTTACAAAAATTGGTGGGGAAAAAGCCTTTCTTGCGAAACCAA-AGCACCAATATCGGGT
* * *
8924 ATCCTGATGGGAAGACTATGTTTAAGGTGACAAATCTTGAAAAGAATGGGGAATAGTATGAGTAT
65 ATCCT-ATGAGAAGACTATGTTTATGGTGTCAAATCTTGAAAAGAATGGGGAATAGTATGAGTAT
* *
8989 TCATGTCTGCCTTATTTAAAAGACAAACTTTGATTCTATCTAAAATGGTGGAAAGAAAAGCTTTT
129 TCATGTCTGCCTTATTTAAGAGACAAACTTTGATTCTATCAAAAATGGTGGAAAGAAAAGCTTTT
* * * * *
9054 CTTGCGGCACCAAAGCGGCAATGTCATGTATCCTAATGAA-GAGATTGTGTTTTTGGATCCTAAT
194 CTTGTGACACCAAAGCAGCAATGTCATGTATCCTAATGAATG-GAATGTGTTTTTGGATCCCAAT
* * *
9118 CTTGAAAAGAATGGAGATGGTCACGAGAATCGATGCTTGTCTTATTTA
258 CTTGAAAAGAATGGAGATTGTTACTAGAATCGATGCTTGTCTTATTTA
9166 TCCTAATGAG
Statistics
Matches: 2347, Mismatches: 301, Indels: 62
0.87 0.11 0.02
Matches are distributed among these distances:
471 2 0.00
472 385 0.16
473 41 0.02
474 245 0.10
475 782 0.33
476 874 0.37
477 18 0.01
ACGTcount: A:0.36, C:0.14, G:0.19, T:0.31
Consensus pattern (475 bp):
TAGACTTTACAAAAATTGGTGGGGAAAAAGCCTTTCTTGCGAAACCAAAGCACCAATATCGGGTA
TCCTATGAGAAGACTATGTTTATGGTGTCAAATCTTGAAAAGAATGGGGAATAGTATGAGTATTC
ATGTCTGCCTTATTTAAGAGACAAACTTTGATTCTATCAAAAATGGTGGAAAGAAAAGCTTTTCT
TGTGACACCAAAGCAGCAATGTCATGTATCCTAATGAATGGAATGTGTTTTTGGATCCCAATCTT
GAAAAGAATGGAGATTGTTACTAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTA
AGTAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAATATCATCAATATCATTAATCTTAATG
AGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCACGTTTG
GCTCATTTGAGGCATGAACT
Found at i:11213 original size:478 final size:473
Alignment explanation
Indices: 9384--11267 Score: 2442
Period size: 475 Copynumber: 4.0 Consensus size: 473
9374 ACTGAAGTTT
* * * *
9384 CCAATCTTGAAAATAATGGAGATTGTTACTAGAATCGATGCTTGTCTTATTTAAGGGATTAACTT
1 CCAATCTTGAAAAGAATGGAGATTGTTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTA
* * *
9449 TGAT-TCTAAGTAAAATACA-GCAAAGAAACGATTTCCAAGCAAAAGAATATCATCAATATCATT
66 TGATAT-TAAGTAAAATA-AGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATT
* * * * * * * * *
9512 TATCCTAATCAGGAGAATGCGTTTTAGTGCCTAATCACAAACTGAATAAAGTTCATTACTAGAAT
129 AATCTTAATGAGGAGAATGTGTTTTAGTGCCTAATCACAAAATGAATGAAGATCAATACTAGAAC
* * * * * * *
9577 CTATGTTTGTCTCGTTTGAGGCACGAACTTAGACTTTACAAAAATTGGAGGAAAAAAAGCTTTTC
194 CCACGTTTGGCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGAAAGAAAGCCTTTC
* ** * * *
9642 CTGCGAAACCAAAGCTGCAATATCGGGTATCCTAATGAGAAGACTATGTTTAAGGTGCCAAATCT
259 TTGCGAAACCAAAGCT-CAATATCATGTATCCTAATGAGAAGACTATATTTAAAGTGCCTAATCT
* ** *
9707 TGAAAAGAATGGGGAATAGTATGAGTATTCATGTCTACCTTATTTAAGAGACCAACTTTGATTCT
323 TGAAAAGAATGGGGAATAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCT
* **
9772 ATTAAAAACAATGGAAAAACAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAA
388 ATCAAAAACGGTGG-AAAA-AAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAA
9837 TGAAGAGAATGTGTTTTTGGATC
451 TGAAGAGAATGTGTTTTTGGATC
* * * *
9860 CCAATCTTGAGAAGAATGGAGATTGTTATGAGCATCGATGCTTGTCTTATTTATGGGATGAACTA
1 CCAATCTTGAAAAGAATGGAGATTGTTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTA
* * * * *
9925 TGATACTACGTAAAATAGGGCAAAGAGAAGATTTCCATGCAAAAG-AAATCAACAATATCATTAA
66 TGATATTAAGTAAAATAAGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTAA
* *
9989 T-TTGAATAAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGGATGAAGATCAAAATACTAGA
131 TCTT-AATGAGGAGAATGTGTTT-TAGTGCCTAATCACAAAATGAATGAAGATC--AATACTAGA
* * * * *
10053 ACCCATGTTTGGCTCATTTGAGGTACAAACTTAGACTTTACAAAAATTGGTGGGAAGAAAGCTTT
192 ACCCACGTTTGGCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGAAAGAAAGCCTT
* * * * *
10118 TTTTGCGAAGCCCAAGCATCAATATCATGTATACTAATGAGAAGACTAT-TGTCAAAGTGCCTAA
257 TCTTGCGAAACCAAAGC-TCAATATCATGTATCCTAATGAGAAGACTATAT-TTAAAGTGCCTAA
* * * *
10182 TCTTGAAAAGAATGGGCAATAGTGTAAGTATTCATG-TTGTCTTATTTAAGAGATAAACTTTGAT
320 TCTTGAAAAGAATGGGGAATAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGAT
* * * *
10246 TCTATCAAAAACGGTGGAAAAAAAGCTTTCCTTGTGCCCCCAAAGCATCAATGTCATGTATCCTA
385 TCTATCAAAAACGGTGGAAAAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTA
* *
10311 ATGAATAGAATATGTTTTTGGATC
450 ATGAAGAGAATGTGTTTTTGGATC
*
10335 CCAATGTTGAAAAGAATGGAGATTGTTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAAC-A
1 CCAATCTTGAAAAGAATGGAGATTGTTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTA
* * * * *
10399 TTGATTTTAAGAAAAATAGGGCAAATAAAAGATTTCCATGTAAAAGAAAATCATCAATATCATTA
66 -TGATATTAAGTAAAATAAGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTA
* * * * *
10464 ATCTTAATGAGGAGAATGTTTTTATAGTTCTTAATCACAAAATGAATGAAGATCAAAACTAGAAT
130 ATCTTAATGAGGAGAATGTGTTT-TAGTGCCTAATCACAAAATGAATGAAGATCAATACTAGAAC
* *
10529 CCACGTTTGGTTGATTTGAGGCACGAA-TTAGACTTTACAAAAATTGGTTGGAAA-AAAGCCTTT
194 CCACGTTTGGCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGG-TGGAAAGAAAGCCTTT
* * * *
10592 CTTGCGACACCAAAGCTCAAATATCATGTAACCTAATGAGAAGTCTATGTTTAAAGTGCCTAATC
258 CTTGCGAAACCAAAGCTC-AATATCATGTATCCTAATGAGAAGACTATATTTAAAGTGCCTAATC
*
10657 TTGAAAAGAATGGGGAATAGTATGAGTATTCATGTTTGTCTTATTTAAGAGATAAACTTTGATTC
322 TTGAAAAGAATGGGGAATAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTC
* * * * *
10722 TATCAAAAACGGTGGAAAGTAAAGAATTTT-TTGCGACACCAAAGTATTAATGTCATGTATCCTT
387 TATCAAAAACGGTGGAAA-AAAAG-CTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTA
10786 AT-AAGGAGAATGTGTTTTTGGATC
450 ATGAA-GAGAATGTGTTTTTGGATC
* * *
10810 CCAATCTTGAAAAGAATGGAGATTGTTAGGAGAATCGGTGCTTGTCTAATTTAAGGGATGAACTA
1 CCAATCTTGAAAAGAATGGAGATTGTTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTA
* * *
10875 TGATATTAAGCAAAATAAGACAAAGAAAAGATTTCCATGCAAAATAAAATCATCAATATCATTAA
66 TGATATTAAGTAAAATAAGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTAA
*
10940 TCTTAATGAGGAGAATGTGTTTATAAAGTGCCTAATCATAAAATGAGA-GAAGATCAATACTAGA
131 TCTTAATGAGGAGAATGTGTTT-T--AGTGCCTAATCACAAAATGA-ATGAAGATCAATACTAGA
*
11004 ACCCACGTTTGGCTCATTTGAGGCATGAACTTAGACTTTACAAAAATTGGTGGAAAGAAAGCCTT
192 ACCCACGTTTGGCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGAAAGAAAGCCTT
** * * **
11069 TCTTGTAAAACCAAAGCATCAATATCATGTATCCTTATGAGAAGACTACATTTATGGTGCCTAAT
257 TCTTGCGAAACCAAAGC-TCAATATCATGTATCCTAATGAGAAGACTATATTTAAAGTGCCTAAT
** * * ** *
11134 CCCGAAAAGAATAGGGATTAGTATGACAATTCATGTTTTTCTTATTTAAGAGACAAACTTTGATT
321 CTTGAAAAGAATGGGGAATAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATT
* ** *
11199 CTATCAAAAACGGTGGAAAAAAAGCTTTTGTTGTAACACCAAAGCATCAATGCCATGTATCCTAA
386 CTATCAAAAACGGTGGAAAAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAA
11264 TGAA
451 TGAA
11268 AAAATGTTTC
Statistics
Matches: 1225, Mismatches: 156, Indels: 52
0.85 0.11 0.04
Matches are distributed among these distances:
472 2 0.00
473 111 0.09
474 89 0.07
475 382 0.31
476 195 0.16
477 137 0.11
478 306 0.25
479 3 0.00
ACGTcount: A:0.37, C:0.14, G:0.18, T:0.30
Consensus pattern (473 bp):
CCAATCTTGAAAAGAATGGAGATTGTTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTA
TGATATTAAGTAAAATAAGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTAA
TCTTAATGAGGAGAATGTGTTTTAGTGCCTAATCACAAAATGAATGAAGATCAATACTAGAACCC
ACGTTTGGCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGAAAGAAAGCCTTTCTT
GCGAAACCAAAGCTCAATATCATGTATCCTAATGAGAAGACTATATTTAAAGTGCCTAATCTTGA
AAAGAATGGGGAATAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATC
AAAAACGGTGGAAAAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAATGAAG
AGAATGTGTTTTTGGATC
Found at i:11223 original size:158 final size:157
Alignment explanation
Indices: 11052--11545 Score: 425
Period size: 158 Copynumber: 3.1 Consensus size: 157
11042 TACAAAAATT
* * *
11052 GGTGGAAAGAAAGCCTTTCTTGTAAAACCAAAGCATCAATATCATGTATCCTTATGAGAAGACTA
1 GGTGGAAAAAAAGCCTTTCTTGTAAAACCAAAGCATCAATACCATGTATCCTTATGAGAAAACTA
*
11117 CATTTATGGTGCCTAATCCCGAAAAGAATAGGGATTAGTATGACAATTCATGTTTTTCTTATTTA
66 CATTTATGGTGCCTAATCCCGAAAAGAAT-GGGATTAGTATGACAATTCATGTTTGTCTTATTTA
11182 AGAGACAAACTTTGATTCTATCAAAAAC
130 AGAGACAAACTTTGATTCTATCAAAAAC
* * * * * *
11210 GGTGGAAAAAAAGCTTTTGTTGTAACACCAAAGCATCAATGCCATGTATCCTAATGA-AAAAAT-
1 GGTGGAAAAAAAGCCTTTCTTGTAAAACCAAAGCATCAATACCATGTATCCTTATGAGAAAACTA
** * * * * * * * *
11273 GTTTCTATTGTGCCTAATCAC-AAATGAGTGAAGATCAAAGCTA-G--AATCCATGTTTGTCTCA
66 CATT-TATGGTGCCTAATCCCGAAAAGAATG-GGAT--TAG-TATGACAATTCATGTTTGTCTTA
* * * *
11334 TTTGAG-GCACAGACTTAGACTT-TA-CAAAAATT
126 TTTAAGAG-ACAAACTTTGA-TTCTATCAAAAA-C
* * * ** * * *
11366 GTTAGG-TAGAAAGCCTTTCTTGCGAAACCAAAGCATCAATACCGTGTATCCTTACGAGAACACT
1 GGT-GGAAAAAAAGCCTTTCTTGTAAAACCAAAGCATCAATACCATGTATCCTTATGAGAAAACT
* * * * * * *
11430 ATATTTATGGGGCCTAGTCCTGAAAAGAATGGAGACTAGTATGACTATTCATGTTTGTCTTGTTT
65 ACATTTATGGTGCCTAATCCCGAAAAGAATGG-GATTAGTATGACAATTCATGTTTGTCTTATTT
*
11495 AAGAGACAAACTTTGATTCTGTCAAAAAC
129 AAGAGACAAACTTTGATTCTATCAAAAAC
* *
11524 TGT-GAAAGAAAAGCTTTTCTTG
1 GGTGGAAA-AAAAGCCTTTCTTG
11546 CGACACCAAA
Statistics
Matches: 251, Mismatches: 64, Indels: 42
0.70 0.18 0.12
Matches are distributed among these distances:
155 10 0.04
156 87 0.35
157 40 0.16
158 105 0.42
159 9 0.04
ACGTcount: A:0.35, C:0.16, G:0.18, T:0.31
Consensus pattern (157 bp):
GGTGGAAAAAAAGCCTTTCTTGTAAAACCAAAGCATCAATACCATGTATCCTTATGAGAAAACTA
CATTTATGGTGCCTAATCCCGAAAAGAATGGGATTAGTATGACAATTCATGTTTGTCTTATTTAA
GAGACAAACTTTGATTCTATCAAAAAC
Found at i:11354 original size:314 final size:315
Alignment explanation
Indices: 10967--11581 Score: 864
Period size: 314 Copynumber: 2.0 Consensus size: 315
10957 TGTTTATAAA
*
10967 GTGCCTAATCATAAAATGAGAGAAGATCAATACTAGAACCCACGTTTGGCTCATTTGAGGCATGA
1 GTGCCTAATCATAAAATGAGAGAAGATCAATACTAGAACCCACGTTTGGCTCATTTGAGGCAAGA
* *
11032 ACTTAGACTTTACAAAAATTGGT-GGAAAGAAAGCCTTTCTTGTAAAACCAAAGCATCAATATCA
66 ACTTAGACTTTACAAAAATTGGTAGG-AAGAAAGCCTTTCTTGCAAAACCAAAGCATCAATACCA
* * * *
11096 TGTATCCTTATGAGAAGACTACATTTATGGTGCCTAATCCCGAAAAGAATAGG-GATTAGTATGA
130 TGTATCCTTACGAGAACACTACATTTATGGGGCCTAATCCCGAAAAGAAT-GGAGACTAGTATGA
*
11160 CAATTCATGTTTTTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAA-AAAAGC
194 CAATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGT-GAAAGAAAAGC
* *
11224 TTTTGTTGTAACACCAAAGCATCAATGCCATGTATCCTAATGAAAAAATGTTTCTATT
258 TTTTCTTGCAACACCAAAGCATCAATGCCATGTATCCTAATGAAAAAATGTTTCTATT
* * * * *
11282 GTGCCTAATCA-CAAATGAGTGAAGATCAA-AGCTAGAATCCATGTTTGTCTCATTTGAGGCACA
1 GTGCCTAATCATAAAATGAGAGAAGATCAATA-CTAGAACCCACGTTTGGCTCATTTGAGGCA-A
* * *
11345 G-ACTTAGACTTTACAAAAATTGTTAGGTAGAAAGCCTTTCTTGCGAAACCAAAGCATCAATACC
64 GAACTTAGACTTTACAAAAATTGGTAGGAAGAAAGCCTTTCTTGCAAAACCAAAGCATCAATACC
* * * *
11409 GTGTATCCTTACGAGAACACTATATTTATGGGGCCTAGTCCTGAAAAGAATGGAGACTAGTATGA
129 ATGTATCCTTACGAGAACACTACATTTATGGGGCCTAATCCCGAAAAGAATGGAGACTAGTATGA
* * * *
11474 CTATTCATGTTTGTCTTGTTTAAGAGACAAACTTTGATTCTGTCAAAAACTGTGAAAGAAAAGCT
194 CAATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGAAAGAAAAGCT
* ** * *
11539 TTTCTTGCGACACCAAAGTGTCATTGTCATGTATCCTAATGAA
259 TTTCTTGCAACACCAAAGCATCAATGCCATGTATCCTAATGAA
11582 TAGAATGTGT
Statistics
Matches: 264, Mismatches: 31, Indels: 11
0.86 0.10 0.04
Matches are distributed among these distances:
313 7 0.03
314 243 0.92
315 14 0.05
ACGTcount: A:0.35, C:0.17, G:0.18, T:0.30
Consensus pattern (315 bp):
GTGCCTAATCATAAAATGAGAGAAGATCAATACTAGAACCCACGTTTGGCTCATTTGAGGCAAGA
ACTTAGACTTTACAAAAATTGGTAGGAAGAAAGCCTTTCTTGCAAAACCAAAGCATCAATACCAT
GTATCCTTACGAGAACACTACATTTATGGGGCCTAATCCCGAAAAGAATGGAGACTAGTATGACA
ATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGAAAGAAAAGCTTT
TCTTGCAACACCAAAGCATCAATGCCATGTATCCTAATGAAAAAATGTTTCTATT
Found at i:11655 original size:791 final size:776
Alignment explanation
Indices: 10495--12042 Score: 2045
Period size: 791 Copynumber: 2.0 Consensus size: 776
10485 TTATAGTTCT
*
10495 TAATCACAAAATGAATGAAGATCAAAACTAGAATCCACGTTTGGTTGATTTGAGGCACGAATTAG
1 TAATCACAAAATGAATGAAGATCAAAACTAGAATCCACGTTTGGTTCATTTGAGGCACGAATTAG
* *
10560 ACTTTACAAAAATTGGTTGGAAAAAAGCCTTTCTTGCGACACCAAAGCTCAAATATCATGTAACC
66 ACTTTACAAAAATTGGTTGGAAAAAAGCCTTTCTTGCGAAACCAAAGCTCAAATACCATGTAACC
* ** * * * * *
10625 TAATGAGAAGTCTATGTTTAAAGTGCCTAATCTTGAAAAGAATGGGGAATAGTATGAGTATTCAT
131 TAACGAGAACACTATATTTAAAGGGCCTAATCCTGAAAAGAATGGAGAATAGTATGACTATTCAT
* *
10690 GTTTGTCTTATTTAAGAGATAAACTTTGATTCTATCAAAAACGGTGGAAAGTAAAGAATTTTTTG
196 GTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGAATTTTTTG
* * *
10755 CGACACCAAAGTATTAATGTCATGTATCCTTATAAGGAGAATGTGTTTTTGGATCCCAATCTTGA
261 CGACACCAAAGTATCAATGTCATGTATCCTAATAAGGAGAATGTGTTTTTGGATCCCAATCTCGA
*
10820 AAAGAATGGAGATTGTTAGGAGAATCGGTGCTTGTCTAATTTAAGGGATGAACTATGATATTAAG
326 AAAGAATGGAGATTGTTAGGAGAATCGATGCTTGTCTAATTTAAGGGATGAACTATGATATTAAG
* *
10885 CAAAATAAGACAAAGAAAAGATTTCCATGCAAAATAAAATCATCAATATCATTAATCTTAATGAG
391 CAAAATAAGACAAAGAAAAGATTTCAATGCAAAA-AAAATCATCAATATCATTAATATTAATGAG
* * * *
10950 GAGAATGTGTTTATAAAGTGCCTAATCATAAAATGAGA-GAAGATCAATACTAGAACCCACGTTT
455 GAAAAAGTGTTTAT--AGTGCCTAATCATAAAAT-AAATGAAGATCAAAACTAGAACCCACGTTT
* *
11014 GGCTCATTTGAGGCATGAACTTAGACTTTACAAAAATTGGTGGAAAGAAAGCCTTTCTTGTAAAA
517 GGCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGAAAGAAAGCCTTTCTTGCAAAA
* * * *
11079 CCAAAGCATCAATATCATGTATCCTTATGAGAAGACTACA-TTTATGGTGCCTAATCCCGAAAAG
582 CCAAAGCACCAATATCATGTATCCTAATGAGAAGACTA-AGTTTAAGGTGCCAAATCCCG-AAA-
*
11143 AATAGGGATTAGTATGACAATTCATGTTTTTCTTATTTAAGAGACAAACTTTGATTCTATCAAAA
644 AA-A---A-T-G-A-G--AA-TCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAA
* *
11208 ACGGTGGAA-AAAAAGCTTTTGTTGTAACACCAAAGCATCAATGCCATGTATCCTAATGAAAAAA
698 ACGGTGGAAGAAAAAGC-TTTCTTGCAACACCAAAGCATCAATGCCATGTATCCTAATGAAAAAA
11272 TGTTTCTATTGTGCC
762 TGTTTCTATTGTGCC
* * * *
11287 TAATCAC-AAATGAGTGAAGATCAAAGCTAGAATCCATGTTT-GTCTCATTTGAGGCACAGACTT
1 TAATCACAAAATGAATGAAGATCAAAACTAGAATCCACGTTTGGT-TCATTTGAGGCAC-GAATT
* * *
11350 AGACTTTACAAAAATT-GTTAGGTAGAAAGCCTTTCTTGCGAAACCAAAGCATC-AATACCGTGT
64 AGACTTTACAAAAATTGGTT-GGAAAAAAGCCTTTCTTGCGAAACCAAAGC-TCAAATACCATGT
* * ** * *
11413 ATCCTTACGAGAACACTATATTTATGGGGCCTAGTCCTGAAAAGAATGGAGACTAGTATGACTAT
127 AACCTAACGAGAACACTATATTTAAAGGGCCTAATCCTGAAAAGAATGGAGAATAGTATGACTAT
* * * *
11478 TCATGTTTGTCTTGTTTAAGAGACAAACTTTGATTCTGTCAAAAACTGT-GAAAGAAAAG-CTTT
192 TCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGAATTT
* * *
11541 TCTTGCGACACCAAAGTGTCATTGTCATGTATCCTAATGAA-TAGAATGTGTTTTTGGATCCCAA
257 T-TTGCGACACCAAAGTATCAATGTCATGTATCCTAAT-AAGGAGAATGTGTTTTTGGATCCCAA
* * * * *
11605 TCTCGAAAAGAATGGAGATTGTTATGAGAATTGATGCTTGTCTTATTTAAGTGATGAACTTTGAT
320 TCTCGAAAAGAATGGAGATTGTTAGGAGAATCGATGCTTGTCTAATTTAAGGGATGAACTATGAT
* * * * * * * * *
11670 TTTGAGGAAAATAGGGCAAAGAAAAGATTTTAATGCGAAAGAAATCATCAGTATCATTAATATTA
385 ATTAAGCAAAATAAGACAAAGAAAAGATTTCAATGCAAAAAAAATCATCAATATCATTAATATTA
* * * * *
11735 TTGAGGAAAAAGTGTTTATAGTGCCTGATCATAAAATAAATGAAGATCAAAATTAGAATCCATGT
450 ATGAGGAAAAAGTGTTTATAGTGCCTAATCATAAAATAAATGAAGATCAAAACTAGAACCCACGT
* * * *
11800 TTGTCTCATTTGAGGCGCGAACTTAGACTTTACATAAATTGGTGGGAAGAAAGCCTTTCTTGCAA
515 TTGGCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGAAAGAAAGCCTTTCTTGCAA
* * **
11865 AACCAAAGCACCAATTTCATGTATCCTAATGATAAGACTAAGTTTAAGGTGCCAAATCTTGAAAA
580 AACCAAAGCACCAATATCATGTATCCTAATGAGAAGACTAAGTTTAAGGTGCCAAATCCCGAAAA
** *
11930 AAATGAGAATCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAATTGGTGGAAGCA
645 AAATGAGAATCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAGAA
* *
11995 AAAGCTTTCTTGCAACACCAAAGCATCAATGTCTTGTATCCTAATGAA
710 AAAGCTTTCTTGCAACACCAAAGCATCAATGCCATGTATCCTAATGAA
12043 TGGAATTTGT
Statistics
Matches: 663, Mismatches: 84, Indels: 35
0.85 0.11 0.04
Matches are distributed among these distances:
775 89 0.13
776 8 0.01
778 1 0.00
779 1 0.00
780 1 0.00
781 1 0.00
782 1 0.00
785 1 0.00
786 2 0.00
787 6 0.01
788 147 0.22
790 44 0.07
791 199 0.30
792 160 0.24
793 2 0.00
ACGTcount: A:0.37, C:0.14, G:0.18, T:0.31
Consensus pattern (776 bp):
TAATCACAAAATGAATGAAGATCAAAACTAGAATCCACGTTTGGTTCATTTGAGGCACGAATTAG
ACTTTACAAAAATTGGTTGGAAAAAAGCCTTTCTTGCGAAACCAAAGCTCAAATACCATGTAACC
TAACGAGAACACTATATTTAAAGGGCCTAATCCTGAAAAGAATGGAGAATAGTATGACTATTCAT
GTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGAATTTTTTG
CGACACCAAAGTATCAATGTCATGTATCCTAATAAGGAGAATGTGTTTTTGGATCCCAATCTCGA
AAAGAATGGAGATTGTTAGGAGAATCGATGCTTGTCTAATTTAAGGGATGAACTATGATATTAAG
CAAAATAAGACAAAGAAAAGATTTCAATGCAAAAAAAATCATCAATATCATTAATATTAATGAGG
AAAAAGTGTTTATAGTGCCTAATCATAAAATAAATGAAGATCAAAACTAGAACCCACGTTTGGCT
CATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGAAAGAAAGCCTTTCTTGCAAAACCAA
AGCACCAATATCATGTATCCTAATGAGAAGACTAAGTTTAAGGTGCCAAATCCCGAAAAAAATGA
GAATCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAGAAAAAGCT
TTCTTGCAACACCAAAGCATCAATGCCATGTATCCTAATGAAAAAATGTTTCTATTGTGCC
Found at i:11667 original size:950 final size:950
Alignment explanation
Indices: 9540--11670 Score: 2171
Period size: 951 Copynumber: 2.2 Consensus size: 950
9530 GCGTTTTAGT
* * * ** * * * *
9540 GCCTAATCACAAACTGAATAAAGTTCATTACTAGAATCTATGTTTGTCTCG-TTTGAGGCACGAA
1 GCCTAATCACAAAATGAATGAAGATCAAAACTAGAATCCACGTTTG-CTTGATTTAAGGCAC-AA
* * ** * * * **
9604 CTTAGACTTTACAAAAATTGGAGGAAAAAAAGCTTTTCCTGCGAAACCAAAGCTGC-AATATCGG
64 ATTAGACTTTACAAAAACTGGTTGAAAAAAAGCCTTTCTTGCGACACCAAAGCT-CAAATATCAT
* * * * * * *
9668 GTATCCTAATGAGAAGACTATGTTTAAGGTGCCAAATCTTGAAAAGAATGGGGAATAGTATGAGT
128 GTAACCTAATGAGAAGAATATGTTTAAAGTGCCCAATCTCGAAAAGAATGGAGAATAGTATGAGA
** ** * *
9733 ATTCATG-TCTACCTTATTTAAGAGACCAACTTTGATTCTATTAAAAACAATGGAAAAACAAAGC
193 ATTCATGCT-TGTCTTATTTAAGAGATAAACTTTGATTCTATCAAAAACAATGGAAAAACAAAGA
9797 TTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAATGAAGAGAATGTGTTTTTGGATCCC
257 TTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAATGAAGAGAATGTGTTTTTGGATCCC
* * * * *
9862 AATCTTGAGAAGAATGGAGATTGTTATGAGCATCGATGCTTGTCTTATTTATGGGATGAACTATG
322 AATCTTGAAAAGAATGGAGATTGTTAGGAGAATCGATGCTTGTCTAATTTAAGGGATGAACTATG
* * * * * *
9927 ATACTACGTAAAATAGGGCAAAGAGAAGATTTCCATGCAAAAGAAATCAACAATATCATTAATTT
387 ATACTAAGCAAAATAAGACAAAGAAAAGATTTCCATGCAAAAAAAATCAACAATATCATTAATTT
9992 GAATAAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGGATGAAGATCAAAATACTAGAACCC
452 GAATAAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGGATGAAGATC-AAATACTAGAACCC
* * * * *
10057 ATGTTTGGCTCATTTGAGGTACAAACTTAGACTTTACAAAAATTGGTGGGAAGAAAGCTTTTTTT
516 ACGTTTGGCTCATTTGAGGCACAAACTTAGACTTTACAAAAATTGGTGGAAAGAAAGCCTTTCTT
* * * **
10122 GCGAAGCCCAAGCATCAATATCATGTATACTAATGAGAAGACTATTGTCAAAGTGCCTAATCTTG
581 GCAAAACCAAAGCATCAATATCATGTATACTAATGAGAAGACTATTGTCAAAGTGCCTAATCCCG
* ** *
10187 AAAAGAATGGGCAATAGTGTAAGTATTCATGTTGTCTTATTTAAGAGATAAACTTTGATTCTATC
646 AAAAGAATGGGCAATAGTATAACAATTCATGTTGTCTTATTTAAGAGACAAACTTTGATTCTATC
** * *
10252 AAAAACGGTGGAAAAAAAGCTTTCCTTGTGCCCCCAAAGCATCAATGTCATGTATCCTAATGAAT
711 AAAAACGGTGGAAAAAAAGCTTTCCTTGTAACACCAAAGCATCAATGCCATGTATCCTAATGAAT
*** * *** *
10317 AGAATATGTTTTTGGATCCCAATGTTGAAAAGAATGGAGATTGTTACGAGAATCGATGCTTGTCT
776 AGAATATGTTTTTGGATCCCAATGCACAAAAGAATGAAGATTCAAACGAGAATCCATGCTTGTCT
* * * * * * *
10382 TATTTAAGGGATGAACATTGATTTTAAGAAAAATAGGGCAAATAAAAGATTTCCATGTAAAAGAA
841 CATTTAAGGCAAGAACATTGACTTTAACAAAAATAGGGCAAATAAAAGATTTCCATGCAAAACAA
* * * * * * * *
10447 AATCATCAATATCATTAATCTTAATGAGGAGAATGTTTTTATAGT
906 AAGCATCAATACCATTAATCTTAACGAGAACAATATATTTATAGG
* * * * *
10492 TCTTAATCACAAAATGAATGAAGATCAAAACTAGAATCCACGTTTGGTTGATTTGAGGCACGAAT
1 GCCTAATCACAAAATGAATGAAGATCAAAACTAGAATCCACGTTTGCTTGATTTAAGGCACAAAT
* *
10557 TAGACTTTACAAAAATTGGTTGGAAAAAAGCCTTTCTTGCGACACCAAAGCTCAAATATCATGTA
66 TAGACTTTACAAAAACTGGTTGAAAAAAAGCCTTTCTTGCGACACCAAAGCTCAAATATCATGTA
** * * * *
10622 ACCTAATGAGAAGTCTATGTTTAAAGTGCCTAATCTTGAAAAGAATGGGGAATAGTATGAGTATT
131 ACCTAATGAGAAGAATATGTTTAAAGTGCCCAATCTCGAAAAGAATGGAGAATAGTATGAGAATT
* ** **
10687 CATGTTTGTCTTATTTAAGAGATAAACTTTGATTCTATCAAAAACGGTGG-AAAGTAAAGAATTT
196 CATGCTTGTCTTATTTAAGAGATAAACTTTGATTCTATCAAAAACAATGGAAAAACAAAG-ATTT
* * *
10751 T-TTGCGACACCAAAGTATTAATGTCATGTATCCTTAT-AAGGAGAATGTGTTTTTGGATCCCAA
260 TCTTGCGACACCAAAGCATCAATGTCATGTATCCTAATGAA-GAGAATGTGTTTTTGGATCCCAA
*
10814 TCTTGAAAAGAATGGAGATTGTTAGGAGAATCGGTGCTTGTCTAATTTAAGGGATGAACTATGAT
324 TCTTGAAAAGAATGGAGATTGTTAGGAGAATCGATGCTTGTCTAATTTAAGGGATGAACTATGAT
* *
10879 ATTAAGCAAAATAAGACAAAGAAAAGATTTCCATGCAAAATAAAATCATCAATATCATTAATCTT
389 ACTAAGCAAAATAAGACAAAGAAAAGATTTCCATGCAAAA-AAAATCAACAATATCATTAAT-TT
* *
10944 -AATGAGGAGAATGTGTTTATAAAGTGCCTAATCATAAAATGAGA-GAAGATC-AATACTAGAAC
452 GAATAAGGAGAATGTGTTTAT--AGTGCCTAATCACAAAATG-GATGAAGATCAAATACTAGAAC
**
11006 CCACGTTTGGCTCATTTGAGGCATGAACTTAGACTTTACAAAAATTGGTGGAAAGAAAGCCTTTC
514 CCACGTTTGGCTCATTTGAGGCACAAACTTAGACTTTACAAAAATTGGTGGAAAGAAAGCCTTTC
* * * **
11071 TTGTAAAACCAAAGCATCAATATCATGTATCCTTATGAGAAGACTACATT-T-ATGGTGCCTAAT
579 TTGCAAAACCAAAGCATCAATATCATGTATACTAATGAGAAGACT--ATTGTCAAAGTGCCTAAT
* * *
11134 CCCGAAAAGAATAGGG-ATTAGTATGACAATTCATGTTTTTCTTATTTAAGAGACAAACTTTGAT
642 CCCGAAAAGAAT-GGGCAATAGTATAACAATTCATG-TTGTCTTATTTAAGAGACAAACTTTGAT
**
11198 TCTATCAAAAACGGTGGAAAAAAAGCTTTTGTTGTAACACCAAAGCATCAATGCCATGTATCCTA
705 TCTATCAAAAACGGTGGAAAAAAAGCTTTCCTTGTAACACCAAAGCATCAATGCCATGTATCCTA
* * * * *
11263 ATGAA-A-AA-ATGTTTCTATTG-TGCCTAAT-CACAAATGAGTGAAGA-TCAAAGCTAGAATCC
770 ATGAATAGAATATGTTT-T-TGGAT-CCCAATGCACAAAAGAATGAAGATTCAAA-CGAGAATCC
* * * ** ** *
11322 ATGTTTGTCTCATTTGAGGCACAG-AC-TTAGACTTT-ACAAAAAT-TGTTAGGTAGAAAGCCTT
831 ATGCTTGTCTCATTTAAGGCA-AGAACATT-GACTTTAACAAAAATAGGGCAAATA-AAAG-ATT
* * * * * *
11383 T-CTTGCGAAACCAAAGCATCAATACCGTGT-ATCCTT-ACGAGAACACTATATTTATGGG
892 TCCATGCAAAACAAAAGCATCAATACCAT-TAAT-CTTAACGAGAACAATATATTTATAGG
* * * * * *
11441 GCCTAGTC-CTGAAAA-GAATGGAGA-C--TAGTATGACTATTCATGTTTGTCTTG-TTTAAGAG
1 GCCTAATCAC--AAAATGAATGAAGATCAAAACTA-GA--ATCCACGTTTG-CTTGATTTAAG-G
* * * *
11500 -ACAAACTTTGA-TTCTGTCAAAAACT-G-TGAAAGAAAAGCTTTTCTTGCGACACCAAAGTGTC
59 CACAAA-TTAGACTT-T-ACAAAAACTGGTTGAAA-AAAAGCCTTTCTTGCGACACCAAAG-CTC
* * * * ***
11561 -ATTGTCATGTATCCTAATGA-ATAGAATGTGTTTTTGGAT-CCCAATCTCGAAAAGAATGGAG-
119 AAATATCATGTAACCTAATGAGA-AGAATATGTTTAAAG-TGCCCAATCTCGAAAAGAATGGAGA
* * * *
11622 ATTGTTATGAGAATTGATGCTTGTCTTATTTAAGTGATGAACTTTGATT
182 ATAG-TATGAGAATTCATGCTTGTCTTATTTAAGAGATAAACTTTGATT
11671 TTGAGGAAAA
Statistics
Matches: 979, Mismatches: 161, Indels: 80
0.80 0.13 0.07
Matches are distributed among these distances:
946 3 0.00
947 2 0.00
948 6 0.01
949 99 0.10
950 331 0.34
951 364 0.37
952 144 0.15
953 28 0.03
954 2 0.00
ACGTcount: A:0.36, C:0.14, G:0.19, T:0.31
Consensus pattern (950 bp):
GCCTAATCACAAAATGAATGAAGATCAAAACTAGAATCCACGTTTGCTTGATTTAAGGCACAAAT
TAGACTTTACAAAAACTGGTTGAAAAAAAGCCTTTCTTGCGACACCAAAGCTCAAATATCATGTA
ACCTAATGAGAAGAATATGTTTAAAGTGCCCAATCTCGAAAAGAATGGAGAATAGTATGAGAATT
CATGCTTGTCTTATTTAAGAGATAAACTTTGATTCTATCAAAAACAATGGAAAAACAAAGATTTT
CTTGCGACACCAAAGCATCAATGTCATGTATCCTAATGAAGAGAATGTGTTTTTGGATCCCAATC
TTGAAAAGAATGGAGATTGTTAGGAGAATCGATGCTTGTCTAATTTAAGGGATGAACTATGATAC
TAAGCAAAATAAGACAAAGAAAAGATTTCCATGCAAAAAAAATCAACAATATCATTAATTTGAAT
AAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGGATGAAGATCAAATACTAGAACCCACGTT
TGGCTCATTTGAGGCACAAACTTAGACTTTACAAAAATTGGTGGAAAGAAAGCCTTTCTTGCAAA
ACCAAAGCATCAATATCATGTATACTAATGAGAAGACTATTGTCAAAGTGCCTAATCCCGAAAAG
AATGGGCAATAGTATAACAATTCATGTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAA
CGGTGGAAAAAAAGCTTTCCTTGTAACACCAAAGCATCAATGCCATGTATCCTAATGAATAGAAT
ATGTTTTTGGATCCCAATGCACAAAAGAATGAAGATTCAAACGAGAATCCATGCTTGTCTCATTT
AAGGCAAGAACATTGACTTTAACAAAAATAGGGCAAATAAAAGATTTCCATGCAAAACAAAAGCA
TCAATACCATTAATCTTAACGAGAACAATATATTTATAGG
Found at i:13934 original size:12 final size:12
Alignment explanation
Indices: 13904--13980 Score: 59
Period size: 12 Copynumber: 5.9 Consensus size: 12
13894 AAGAGAAAAA
13904 AGAGATAGGAAGG
1 AGAGATAGG-AGG
*
13917 A-TGATAGGAGG
1 AGAGATAGGAGG
13928 AGAGATAGGAGAGGCAG
1 AGAGATA-G-GA-G--G
13945 TAGAGATAGGA-G
1 -AGAGATAGGAGG
13957 AGATGATAGGAGG
1 AGA-GATAGGAGG
13970 AGAGATAGGAG
1 AGAGATAGGAG
13981 AGATAATAGA
Statistics
Matches: 53, Mismatches: 2, Indels: 19
0.72 0.03 0.26
Matches are distributed among these distances:
11 7 0.13
12 26 0.49
13 6 0.11
14 2 0.04
15 1 0.02
16 2 0.04
17 2 0.04
18 7 0.13
ACGTcount: A:0.42, C:0.01, G:0.45, T:0.12
Consensus pattern (12 bp):
AGAGATAGGAGG
Found at i:13939 original size:9 final size:9
Alignment explanation
Indices: 13925--13985 Score: 56
Period size: 9 Copynumber: 7.1 Consensus size: 9
13915 GGATGATAGG
13925 AGGAGAGAT
1 AGGAGAGAT
**
13934 AGGAGAGGC
1 AGGAGAGAT
*
13943 AGTAGAGAT
1 AGGAGAGAT
13952 AGGAGAGAT
1 AGGAGAGAT
* *
13961 --GATAG-G
1 AGGAGAGAT
13967 AGGAGAGAT
1 AGGAGAGAT
13976 AGGAGAGAT
1 AGGAGAGAT
13985 A
1 A
13986 ATAGAGAGAG
Statistics
Matches: 39, Mismatches: 10, Indels: 6
0.71 0.18 0.11
Matches are distributed among these distances:
7 4 0.10
8 4 0.10
9 31 0.79
ACGTcount: A:0.43, C:0.02, G:0.44, T:0.11
Consensus pattern (9 bp):
AGGAGAGAT
Found at i:13963 original size:42 final size:42
Alignment explanation
Indices: 13895--14013 Score: 150
Period size: 42 Copynumber: 2.8 Consensus size: 42
13885 TAGCCCTCAA
* *
13895 AGAGAAAAAAGAGATAGGA-AGGATGATAGGAGGAGAGATAGG
1 AGAGACAATAGAGATAGGAGA-GATGATAGGAGGAGAGATAGG
* *
13937 AGAGGCAGTAGAGATAGGAGAGATGATAGGAGGAGAGATAGG
1 AGAGACAATAGAGATAGGAGAGATGATAGGAGGAGAGATAGG
* * * *
13979 AGAGATAATAGAGAGAGGAGGGATGACAGGAGGAG
1 AGAGACAATAGAGATAGGAGAGATGATAGGAGGAG
14014 GAGAGAAAAA
Statistics
Matches: 66, Mismatches: 10, Indels: 2
0.85 0.13 0.03
Matches are distributed among these distances:
42 65 0.98
43 1 0.02
ACGTcount: A:0.45, C:0.02, G:0.44, T:0.10
Consensus pattern (42 bp):
AGAGACAATAGAGATAGGAGAGATGATAGGAGGAGAGATAGG
Found at i:13989 original size:12 final size:12
Alignment explanation
Indices: 13949--13994 Score: 60
Period size: 12 Copynumber: 3.9 Consensus size: 12
13939 AGGCAGTAGA
13949 GATAGGAGAGAT
1 GATAGGAGAGAT
13961 GATAGGAGGAGA-
1 GATAGGA-GAGAT
13973 GATAGGAGAGAT
1 GATAGGAGAGAT
*
13985 AATA-GAGAGA
1 GATAGGAGAGA
13995 GGAGGGATGA
Statistics
Matches: 31, Mismatches: 1, Indels: 5
0.84 0.03 0.14
Matches are distributed among these distances:
11 10 0.32
12 17 0.55
13 4 0.13
ACGTcount: A:0.46, C:0.00, G:0.41, T:0.13
Consensus pattern (12 bp):
GATAGGAGAGAT
Found at i:20335 original size:42 final size:42
Alignment explanation
Indices: 20280--20398 Score: 184
Period size: 42 Copynumber: 2.8 Consensus size: 42
20270 TTCTTCTCTC
* *
20280 CTCCTCCTGTCATCCCTCCTCTCTCTATTATCTCTCCCGTCT
1 CTCCTCCTATCATCCCTCCTCTCTCTACTATCTCTCCCGTCT
* *
20322 CTCCTCCTATCATCCCTCCTATCTCTACTATCTCTCCTGTCT
1 CTCCTCCTATCATCCCTCCTCTCTCTACTATCTCTCCCGTCT
* *
20364 CTCCTCCTATCATCCCTCCTCTCTCTTCTTTCTCT
1 CTCCTCCTATCATCCCTCCTCTCTCTACTATCTCT
20399 TTGAGGGCTA
Statistics
Matches: 70, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
42 70 1.00
ACGTcount: A:0.08, C:0.47, G:0.03, T:0.42
Consensus pattern (42 bp):
CTCCTCCTATCATCCCTCCTCTCTCTACTATCTCTCCCGTCT
Found at i:20340 original size:24 final size:24
Alignment explanation
Indices: 20304--20382 Score: 71
Period size: 21 Copynumber: 3.5 Consensus size: 24
20294 CCTCCTCTCT
* *
20304 CTATTATCTCTCCCGTCTCTCCTC
1 CTATCATCCCTCCCGTCTCTCCTC
* *
20328 CTATCATCCCT-CC-TATCT-CTA
1 CTATCATCCCTCCCGTCTCTCCTC
*
20349 CTATC-T--CTCCTGTCTCTCCTC
1 CTATCATCCCTCCCGTCTCTCCTC
20370 CTATCATCCCTCC
1 CTATCATCCCTCC
20383 TCTCTCTTCT
Statistics
Matches: 42, Mismatches: 7, Indels: 12
0.69 0.11 0.20
Matches are distributed among these distances:
18 2 0.05
19 1 0.02
20 5 0.12
21 14 0.33
22 5 0.12
23 2 0.05
24 13 0.31
ACGTcount: A:0.11, C:0.47, G:0.03, T:0.39
Consensus pattern (24 bp):
CTATCATCCCTCCCGTCTCTCCTC
Found at i:20383 original size:24 final size:24
Alignment explanation
Indices: 20304--20389 Score: 76
Period size: 24 Copynumber: 3.8 Consensus size: 24
20294 CCTCCTCTCT
* * *
20304 CTATTATCTCTCCCGTCTCTCCTC
1 CTATCATCCCTCCTGTCTCTCCTC
* *
20328 CTATCATCCCTCC--TATCT-CTA
1 CTATCATCCCTCCTGTCTCTCCTC
20349 CTATC-T--CTCCTGTCTCTCCTC
1 CTATCATCCCTCCTGTCTCTCCTC
*
20370 CTATCATCCCTCCTCTCTCT
1 CTATCATCCCTCCTGTCTCT
20390 TCTTTCTCTT
Statistics
Matches: 49, Mismatches: 7, Indels: 12
0.72 0.10 0.18
Matches are distributed among these distances:
18 4 0.08
20 5 0.10
21 14 0.29
22 5 0.10
24 21 0.43
ACGTcount: A:0.10, C:0.47, G:0.02, T:0.41
Consensus pattern (24 bp):
CTATCATCCCTCCTGTCTCTCCTC
Found at i:23362 original size:42 final size:42
Alignment explanation
Indices: 23307--23425 Score: 193
Period size: 42 Copynumber: 2.8 Consensus size: 42
23297 TTCTTCTCTC
* *
23307 CTCCTCCTGTCATCCCTCCTCTCTCTATTATCTCTCCTGTCT
1 CTCCTCCTATCATCCCTCCTCTCTCTACTATCTCTCCTGTCT
*
23349 CTCCTCCTATCATCCCTCCTATCTCTACTATCTCTCCTGTCT
1 CTCCTCCTATCATCCCTCCTCTCTCTACTATCTCTCCTGTCT
* *
23391 CTCCTCCTATCATCCCTCCTCTCTCTTCTTTCTCT
1 CTCCTCCTATCATCCCTCCTCTCTCTACTATCTCT
23426 TTGAGGGCTA
Statistics
Matches: 71, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
42 71 1.00
ACGTcount: A:0.08, C:0.46, G:0.03, T:0.43
Consensus pattern (42 bp):
CTCCTCCTATCATCCCTCCTCTCTCTACTATCTCTCCTGTCT
Found at i:23366 original size:12 final size:11
Alignment explanation
Indices: 23340--23415 Score: 52
Period size: 12 Copynumber: 6.9 Consensus size: 11
23330 TCTATTATCT
*
23340 CTCCTGTCTCTC
1 CTCCTATCTC-C
23352 CTCCTATCATCC
1 CTCCTATC-TCC
23364 CTCCTATCT--
1 CTCCTATCTCC
*
23373 CTACTATCT--
1 CTCCTATCTCC
*
23382 CTCCTGTCTCTC
1 CTCCTATCTC-C
23394 CTCCTATCATCC
1 CTCCTATC-TCC
*
23406 CTCCTCTCTC
1 CTCCTATCTC
23416 TTCTTTCTCT
Statistics
Matches: 53, Mismatches: 6, Indels: 11
0.76 0.09 0.16
Matches are distributed among these distances:
9 15 0.28
11 3 0.06
12 31 0.58
13 4 0.08
ACGTcount: A:0.09, C:0.49, G:0.03, T:0.39
Consensus pattern (11 bp):
CTCCTATCTCC
Found at i:23367 original size:24 final size:24
Alignment explanation
Indices: 23331--23416 Score: 85
Period size: 24 Copynumber: 3.8 Consensus size: 24
23321 CCTCCTCTCT
* *
23331 CTATTATCTCTCCTGTCTCTCCTC
1 CTATCATCCCTCCTGTCTCTCCTC
* *
23355 CTATCATCCCTCC--TATCT-CTA
1 CTATCATCCCTCCTGTCTCTCCTC
23376 CTATC-T--CTCCTGTCTCTCCTC
1 CTATCATCCCTCCTGTCTCTCCTC
*
23397 CTATCATCCCTCCTCTCTCT
1 CTATCATCCCTCCTGTCTCT
23417 TCTTTCTCTT
Statistics
Matches: 49, Mismatches: 7, Indels: 12
0.72 0.10 0.18
Matches are distributed among these distances:
18 4 0.08
20 5 0.10
21 14 0.29
22 5 0.10
24 21 0.43
ACGTcount: A:0.10, C:0.45, G:0.02, T:0.42
Consensus pattern (24 bp):
CTATCATCCCTCCTGTCTCTCCTC
Found at i:23391 original size:18 final size:18
Alignment explanation
Indices: 23322--23392 Score: 52
Period size: 18 Copynumber: 3.6 Consensus size: 18
23312 CCTGTCATCC
* *
23322 CTCCTCTCTCTATTATCT
1 CTCCTGTCTCTACTATCT
*
23340 CTCCTGTCTCTCCTCCTATCAT
1 CTCCTG--TCT-CTACTATC-T
*
23362 CCCTCCTATCTCTACTATCT
1 --CTCCTGTCTCTACTATCT
23382 CTCCTGTCTCT
1 CTCCTGTCTCT
23393 CCTCCTATCA
Statistics
Matches: 41, Mismatches: 6, Indels: 12
0.69 0.10 0.20
Matches are distributed among these distances:
18 15 0.37
20 4 0.10
21 13 0.32
22 4 0.10
24 5 0.12
ACGTcount: A:0.10, C:0.44, G:0.03, T:0.44
Consensus pattern (18 bp):
CTCCTGTCTCTACTATCT
Found at i:27870 original size:159 final size:157
Alignment explanation
Indices: 27670--34066 Score: 1957
Period size: 158 Copynumber: 40.4 Consensus size: 157
27660 ATTGGCGGAA
* * ** * *
27670 AAAAGCCTTTCTTGCGAAACCAAAGCACCAATATCGGGTATCCTAATGAGAAGATTATGTTTAAG
1 AAAAGCTTTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTAATGAGAAGAATGTGTTTAAG
* * * *
27735 GTGCCAAATCTTGAAAAGAATGGGGAATAGCATGAGTATTCATGTCTGTCTTATTTAAGAGACAA
66 GTGCCTAATCTTGAAAAGAATGGAGAATAGTAT-AGTATTCATGTTTGTCTTATTTAAGAGACAA
27800 ACTTTGATTCTATCAAAAATGGTGGAAAG
130 ACTTTGATT-TATCAAAAATGGTGGAAAG
** * **
27829 AAAAGCTTTTCTTGCGTCACCAAAGCATCAATGTCATGTATCCTAATGA-AGAGAATGTGTTTTT
1 AAAAGCTTTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTAATGAGA-AGAATGTGTTTAA
* * * * * * * * *
27893 GAAT-CCCAATCATGAAAAGAATGGAG-ATTGTTATGAG-AATCGATGGTTGCCTTATTTATGGG
65 G-GTGCCTAATCTTGAAAAGAATGGAGAATAG-TAT-AGTATTC-ATGTTTGTCTTATTTAAGAG
** * * *** *
27955 ATGAACTATGATACTAAGTAAAATAGG-GCAAAG
126 ACAAACTTTGAT-TTATCAAAAAT-GGTGGAAAG
* * * ** * * *
27988 AAAAGATTTCCATGC-AAAAGAAATCAACAATATCAT-TAATCTTAAT-AGAGAGAATGTGTTTA
1 AAAAGCTTTTCTTGCGAAACCAAAGCATCAATATCATGT-ATCCTAATGAGA-AGAATGTGTTTA
* * ** * * * * ** ** * *
28050 TA-GTACTTAATC-ACAAAATAAATGAAG-ATCAATACTAGAACCCGCGTTTGGCTCATTT--GA
64 -AGGTGCCTAATCTTGAAAA-GAATGGAGAAT-AGTA-TAGTATTCATGTTTGTCTTATTTAAGA
* * * *
28110 GGCATGAACTTAGACTTTA-CAAAAATTAGTGG--GG
125 GACA--AACTTTGA-TTTATCAAAAA-TGGTGGAAAG
* * * * * * * *
28144 AACAAGCCTTTCTTGCGAAACCAACA-CACCAATGTCAGGTATCCTGATGGGAAGACTATGTTTA
1 AA-AAGCTTTTCTTGCGAAACCAA-AGCATCAATATCATGTATCCTAATGAGAAGAATGTGTTTA
* * * * * *
28208 AGGTGCCAAATCTTGAAATGAATGGGGAATAGTATGAGTATTCATGTCTGCCTTATTTAAAAGAC
64 AGGTGCCTAATCTTGAAAAGAATGGAGAATAGTAT-AGTATTCATGTTTGTCTTATTTAAGAGAC
* * *
28273 AAACTTTGATTCTATCTAAAACGGTGGAAAAA
128 AAACTTTGATT-TATCAAAAATGGTGG-AAAG
* * * * **
28305 AAAAGCTTTTCTTGCGACACCAAAGCAGCAATGTCATGTATCCTAATGA-AGAGATTGTGTTTTT
1 AAAAGCTTTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTAATGAGA-AGAATGTGTTTAA
* * * *
28369 GGAT-CCTAATCTTGAAAAGAATGGAG-ATAGTCATGAG-AATCGATGCTTGTCTTATTTATGAA
65 GG-TGCCTAATCTTGAAAAGAATGGAGAATAGT-AT-AGTATTC-ATGTTTGTCTTATTTAAGAG
** * ** * *
28431 ATGAACTATGATATTATGTAAAATAGG-GCAACG
126 ACAAACTTTGAT-TTATCAAAAAT-GGTGGAAAG
* * * ** * * * *
28464 AAAAG-ATTCCATGC-AAAAGAAATCATCAATATCAT-TAATCTTAATGAGGAGAATGTGTTTGT
1 AAAAGCTTTTCTTGCGAAACCAAAGCATCAATATCATGT-ATCCTAATGAGAAGAATGTGTTT-A
** * * * ** * * * *
28526 A-GTGCCTAATC-ACAAAATGAATGAAG-ATCAATACTAGAACCCACGTTTGGCTCATTTGAG-G
64 AGGTGCCTAATCTTGAAAA-GAATGGAGAAT-AGTA-TAGTATTCATGTTTGTCTTATTTAAGAG
* * * *
28587 TACAAACTTAGACTTTA-CAGAAATTAGTGGGAAG
126 -ACAAACTTTGA-TTTATCA-AAAATGGTGGAAAG
* * * * ** * * *
28621 -AAAGTTTTTCTTGCAAAACTAAAGCATCAATATCGTGTATCCTAATTTGAAGACTATGTTTATG
1 AAAAGCTTTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTAATGAGAAGAATGTGTTTAAG
* * * * * * * *
28685 GCGTCTAATCCTAAAAAGAAAGGGGATTAGTCTGAGTATTCATGTTTGTCTTATTTAAGAGGA-A
66 GTGCCTAATCTTGAAAAGAATGGAGAATAGTAT-AGTATTCATGTTTGTCTTATTTAAGA-GACA
28749 AACTTTGATTCTATCAAAAATGGTGG-AAG
129 AACTTTGATT-TATCAAAAATGGTGGAAAG
* * * * * * *
28778 TAAAAACATTTCTTGC-AACACCAAAGCATCAGTGTCATGTATCTTAATGA-ATGGAATGTGCTA
1 -AAAAGCTTTTCTTGCGAA-ACCAAAGCATCAATATCATGTATCCTAATGAGA-AGAATGTG-TT
* * * * * * * *
28841 AAAGGTTTCC-AATCTTGAAAATAAGGGAG-ATTGTTACTAGAATTGATGCTTGTCTTATTTAA-
62 TAAGG-TGCCTAATCTTGAAAAGAATGGAGAATAG-TA-TAGTATTCATGTTTGTCTTATTTAAG
** * * * * * *
28903 AGGATGAACTTTGATTTTAACTAAAATAGAGCAAAAA
124 A-GACAAACTTTGA-TTTATCAAAAATGGTG-GAAAG
* * ** ** * * * **
28940 AAAACGATTTCCAAGC-AAAAAAATATCATCAATATCATTTATCCTAATGAGGAGAACATGTTTA
1 AAAA-GCTTTTCTTGCGAAACCAA-AGCATCAATATCATGTATCCTAATGAGAAGAATGTGTTTA
* *** * * * * * * *
29004 TA-GTGTCTAA-CAACAAACTGAATGAAG-TTCATTACTAGAATCCATGTTTGTCTCATTTAAG-
64 -AGGTGCCTAATCTTGAAA-AGAATGGAGAAT-AGTA-TAGTATTCATGTTTGTCTTATTTAAGA
* * *
29065 GCACGAACTTAGACTTTA-CAAAAATTGGT-GAAAA
125 G-ACAAACTTTGA-TTTATCAAAAA-TGGTGGAAAG
* * ** * *
29099 AAAAGCTTTTCCTGCGAAACCAAAGCACCAATATCGGGTATCCTAATGAGAAGACTATGTTTAAG
1 AAAAGCTTTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTAATGAGAAGAATGTGTTTAAG
* * * * * * * * *
29164 TTGCCAAATCCTGAAAAGGATGGGGAGTAGTATGAGTATTCATGTCTGCCTTATTCAAGAGACAA
66 GTGCCTAATCTTGAAAAGAATGGAGAATAGTAT-AGTATTCATGTTTGTCTTATTTAAGAGACAA
* * * *
29229 ACTTTGATTCAACTAAAAATGATGGAAAA
130 ACTTTGATTTATC-AAAAATGGTGGAAAG
* * * * **
29258 AAAAGCTTTTTTTGTGACACCAAAGCATCAATGTCATGTATCCTAATGA-AGAGAATGTGTTTTT
1 AAAAGCTTTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTAATGAGA-AGAATGTGTTTAA
* * * * * *
29322 GGAT-CCTAATCGTGAAAAGAATGGAG-ATTGTCCCA-AG-AATCGATGCTTGTCATATTTAAGG
65 GG-TGCCTAATCTTGAAAAGAATGGAGAATAGT---ATAGTATTC-ATGTTTGTCTTATTTAAGA
** * *
29383 GATTAACTATGATATTAAGT-AAAACA-GG-GCAAAG
125 GACAAACTTTGAT-TT-A-TCAAAA-ATGGTGGAAAG
* * * * ** * * * * *
29417 AAAAGATTTCCATGCAAAAGAAAATCATCAATATC-TTTAATCATAATGAGGAGAATGTTTTTAT
1 AAAAGCTTTTCTTGCGAAACCAAAGCATCAATATCATGT-ATCCTAATGAGAAGAATGTGTTTA-
** * * * ** * * * *
29481 A-GTGCCTAATC-ACAAAATGAATGAAG-ATCAATACTAGAACCCACGTCTAG-CTCATTTGAG-
64 AGGTGCCTAATCTTGAAAA-GAATGGAGAAT-AGTA-TAGTATTCATGT-TTGTCTTATTTAAGA
* *
29541 GCACGAACTTAGACTTTA-CAAAAATTGGTGCG--AG
125 G-ACAAACTTTGA-TTTATCAAAAA-TGGTG-GAAAG
* * * * * * *
29575 GAAAGCCTTTCTTGCGAAAGCAAAGCACCAATATCATGTATCCTAATAAGAAGACTATGTTTAAG
1 AAAAGCTTTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTAATGAGAAGAATGTGTTTAAG
* * * * *
29640 GTG-CTAAATATTGAAAA-AAGTGGAGAATAGTATGATTATTCATGTTCGTCTTATTTAAAAGAT
66 GTGCCT-AATCTTGAAAAGAA-TGGAGAATAGTAT-AGTATTCATGTTTGTCTTATTTAAGAGAC
* *
29703 AAACTTTGATTCTATCAAAAATGGT-GTAGG
128 AAACTTTGATT-TATCAAAAATGGTGGAAAG
* * * *
29733 TAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTAACCTAATGA-ATGGAATGTGGTTT
1 -AAAAGCTTTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTAATGAGA-AGAATGT-GTTT
* * * * * * *
29797 -TGG-ACCCAATCTTGAAAATAATGGAG-ATTGTTACTAG-AATCGATGCTTGTCTTATTTAAGA
63 AAGGTGCCTAATCTTGAAAAGAATGGAGAATAG-TA-TAGTATTC-ATGTTTGTCTTATTTAAGA
** * *
29858 GATGAACTTTGATTT-TAAGGAAAATAGG-GCAAAG
125 GACAAACTTTGATTTATCA--AAAAT-GGTGGAAAG
* * * ** * * * * *
29892 AAAAGATTTTCATGCTAAATAAAATCATCAATATCAT-TGATCTTATTAATG-AGAATGTTTTTA
1 AAAAGCTTTTCTTGCGAAACCAAAGCATCAATATCATGT-ATCCTAATGA-GAAGAATGTGTTTA
* ** * * ** * ** * * *
29955 TA-CTGCCTAATC-CCAAAATGAATGAAGATTAACACTAGAACCCATGTTTGGCTCATTTGAG-G
64 -AGGTGCCTAATCTTGAAAA-GAATGGAGAATAGTA-TAGTATTCATGTTTGTCTTATTTAAGAG
* **
30017 CACGAACTTAAACTTTA-CAAAAATTGGTGCG-AAG
126 -ACAAACTTTGA-TTTATCAAAAA-TGGTG-GAAAG
* * * * *
30051 -AAAGCCTTTCTTGCGAAACCAAAGCACCAATATCATGTATCCTAATAAGAAGACTATGTTTAAG
1 AAAAGCTTTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTAATGAGAAGAATGTGTTTAAG
* *
30115 GTG-CTAAATCTTGAAAA-AAGTGGGGAATAGTATGATTATTCATGTTTGTCTTATTTAAGAGAC
66 GTGCCT-AATCTTGAAAAGAA-TGGAGAATAGTAT-AGTATTCATGTTTGTCTTATTTAAGAGAC
* *
30178 AAACTTTGATTCTATCAAAAACGGT-GTAAG
128 AAACTTTGATT-TATCAAAAATGGTGGAAAG
* * * *
30208 TAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTAACCTAATGA-ATGGAATGTGGTTT
1 -AAAAGCTTTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTAATGAGA-AGAATGT-GTTT
* * * * * *
30272 -TGGAT-CCCAATCTTGAAAATAATGGAG-ATTGTTACTAG-AATCGATGCTTGTCTTATTTAAG
63 AAGG-TGCCTAATCTTGAAAAGAATGGAGAATAG-TA-TAGTATTC-ATGTTTGTCTTATTTAAG
** * *
30333 AGATGAACTTTGATTT-TAAGGAAAATAGG-GTAAAG
124 AGACAAACTTTGATTTATCA--AAAAT-GGTGGAAAG
* * * *** * * * * *
30368 AAAAGATTTTCATGCTAATGAAAATCATCAATATCAT-TGATCTTATTAATG-AGAATGTTTTTA
1 AAAAGCTTTTCTTGCGAAACCAAAGCATCAATATCATGT-ATCCTAATGA-GAAGAATGTGTTTA
* ** * * ** * ** * * *
30431 TA-CTGCCTAATC-ACAAAATGAATGAAGATTAACACTAGAACCCATGTTTGGCTCATTTGAG-G
64 -AGGTGCCTAATCTTGAAAA-GAATGGAGAATAGTA-TAGTATTCATGTTTGTCTTATTTAAGAG
* * *
30493 CACGAACTTAGACTTTA-CAAAAATTGGTGGGAAG
126 -ACAAACTTTGA-TTTATCAAAAA-TGGTGGAAAG
* * * * * * *
30527 -GAAGCCTTTCTTGCGAAACCAAGGCA-C-----CA-ATATCCGAATGAGAAGACTATGTTTAAG
1 AAAAGCTTTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTAATGAGAAGAATGTGTTTAAG
* * * * *
30584 GTGCC-AGATCTTGAAAA-AAGTGGGGAATAGTATGACTATTCATGTTAGTGTTATTTAGGAGAC
66 GTGCCTA-ATCTTGAAAAGAA-TGGAGAATAGTAT-AGTATTCATGTTTGTCTTATTTAAGAGAC
* * *
30647 AAACTTTGATTCTATCAAAACTGGTAG-AAC
128 AAACTTTGATT-TATCAAAAATGGTGGAAAG
* * *
30677 AAAAGCTTTTCCTGCGAAACCAAAGCA-CTAATATC-TGGTATCCTAATGAGAAGACTATGTTTA
1 AAAAGCTTTTCTTGCGAAACCAAAGCATC-AATATCAT-GTATCCTAATGAGAAGAATGTGTTTA
* * * *
30740 AGGTGCCAAATCCTGAAAAGAATGGAGAATAGTACGAGTATTCATGTTTGCCTTATTTAAGAGAC
64 AGGTGCCTAATCTTGAAAAGAATGGAGAATAGTA-TAGTATTCATGTTTGTCTTATTTAAGAGAC
* * * *
30805 AAACTTTGATTCTATTAAAAACGATGGAAAA
128 AAACTTTGATT-TATCAAAAATGGTGGAAAG
* * **
30836 AAAAGCTTTTCTTGAGACACCAAAGCATCAATATCATGTATCCTAATGA-AGAGAATGTGTTTTT
1 AAAAGCTTTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTAATGAGA-AGAATGTGTTTAA
* * * * * *
30900 GGATACC-ATTCTTGAAAAGAATGGAG-ATTGCTACTAG-AATCGATGCTTGTCTTATTTAAGGG
65 GG-TGCCTAATCTTGAAAAGAATGGAGAATAG-TA-TAGTATTC-ATGTTTGTCTTATTTAAGAG
** * * *
30962 ATGAGCTTTGATTT-TAAGGAAAATAGG-GCAAAG
126 ACAAACTTTGATTTATCA--AAAAT-GGTGGAAAG
** * * * ** * * * * *
30995 AAAAAATTTCCATGCAAAAGAAAATCATCAATATC-TTTAATCATAATGAGGAGAATGTTTTTAT
1 AAAAGCTTTTCTTGCGAAACCAAAGCATCAATATCATGT-ATCCTAATGAGAAGAATGTGTTTA-
* * * ** * ** * * * *
31059 A-GTGCCTAATC-AGAAAATAAATGAAG-ATCAACG-CCAGAACCCACGTTTGGCTCATTT-AGG
64 AGGTGCCTAATCTTGAAAA-GAATGGAGAAT--A-GTATAGTATTCATGTTTGTCTTATTTAAGA
* * *
31119 GCATAAACTTAGACTTTA-CAAAAATTGGTGG-GA-
125 G-ACAAACTTTGA-TTTATCAAAAA-TGGTGGAAAG
* * * * * *
31152 AAAAGCCTTTCTTGCGAAACCAAAGAACCAATATCGTGTATCCTAATGAGAAGACTATGTTTAAG
1 AAAAGCTTTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTAATGAGAAGAATGTGTTTAAG
* * * * *
31217 GTGCCAAATCTTGAAAA-AAGTGGGGAATAGGATGACTATTCATGTTTGTCTTATTTAAGAGATA
66 GTGCCTAATCTTGAAAAGAA-TGGAGAATAGTAT-AGTATTCATGTTTGTCTTATTTAAGAGACA
* *
31281 AACTTTGATTCTATCAACAACGGTGG-AAG
129 AACTTTGATT-TATCAAAAATGGTGGAAAG
* ** *
31310 TAAAAGCTTTTCTTGC-AACACCCAAGCATCAATGGCATGTAACCTAA--AGAATGGAATGTGTT
1 -AAAAGCTTTTCTTGCGAA-ACCAAAGCATCAATATCATGTATCCTAATGAGAA--GAATGTGTT
* ** * * *
31372 T--GGTGTTCCCAATCTTGAAAATCATGGA-AATTGTCACTA-TAATCCATGATTGTCTTATTTA
62 TAAGGTG--CCTAATCTTGAAAAGAATGGAGAATAGT-A-TAGT-ATTCATGTTTGTCTTATTTA
* ** * * *
31433 AGGGATGAACTTTAATTT-TAAGTAAAATAGG-GCAAAG
122 AGAGACAAACTTTGATTTATCA--AAAAT-GGTGGAAAG
* * * ** ** * * * * * *
31470 AAACGATTTCCAAGC-AAAAGAATATCATCAATATCATTTATACTAATGAGGAGAATGTCTTTGT
1 AAAAGCTTTTCTTGCGAAACCAA-AGCATCAATATCATGTATCCTAATGAGAAGAATGTGTTT-A
* ** * * * * * * *
31534 A-GTACCTAATC-ACAAAATGAATGAAG-TTCGTTACTAGAATCCATGTTTGTCTCATTTGAG-G
64 AGGTGCCTAATCTTGAAAA-GAATGGAGAATAG-TA-TAGTATTCATGTTTGTCTTATTTAAGAG
* * *
31595 CACGAACTTAGACTTTA-CAAAAATTGGTTGAAA-
126 -ACAAACTTTGA-TTTATCAAAAA-TGGTGGAAAG
* * * *** * *
31628 AAAAGCTTTTCCTGTGAAACCAAAGCAGCAATATTGGGTATCCTAATGAGAAGACTATGTTTAAG
1 AAAAGCTTTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTAATGAGAAGAATGTGTTTAAG
* * * * *
31693 TTGCCAAATCTTGAAAAAAATGGGGAATTGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAA
66 GTGCCTAATCTTGAAAAGAATGGAGAATAGTAT-AGTATTCATGTTTGTCTTATTTAAGAGACAA
* * *
31758 ACTTCGATTCTATTAGAAATGGTGGAAAG
130 ACTTTGATT-TATCAAAAATGGTGGAAAG
* * * * * ** * *
31787 TAAAGAATTTTCTTGTGACACCAAAGCACCAATGGCAAGTAACCTAA--AGAATGGAATGTGCTT
1 AAAAG-CTTTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTAATGAGAA--GAATGTG-TT
* * * * * * *
31850 T-TGGTTCCCAATCTTGAAAATAATGGAG-ATTGTTACTAG-AATCGATGCTTGTCTTATTTAAG
62 TAAGGTGCCTAATCTTGAAAAGAATGGAGAATAG-TA-TAGTATTC-ATGTTTGTCTTATTTAAG
* ** * * *
31912 GGATGAACTTTGATTT-TAAGGAAAATAGG-GCAAAT
124 AGACAAACTTTGATTTATCA--AAAAT-GGTGGAAAG
* * * ** * * * * *
31947 AAAAGATTTGCATG-GAAAAAAAAATCATCAATATCAT-TAATCTTAGTAAGGAGAATGTGTTTA
1 AAAAGCTTTTCTTGCG-AAACCAAAGCATCAATATCATGT-ATCCTAATGAGAAGAATGTGTTTA
** * * * * * **
32010 TA-GTGCCTAATC-ACAAAATGAATGAAG-TTCATTACTAGAACTCTCA--TTTGGCTCGTTT--
64 -AGGTGCCTAATCTTGAAAA-GAATGGAGAAT-AGTA-TAGTA-T-TCATGTTTGTCTTATTTAA
*
32068 GATGTACAAACTTAGACTTTA-CAAAAATTGGT-GAGAAG
123 GA-G-ACAAACTTTGA-TTTATCAAAAA-TGGTGGA-AAG
* ** * * * * *
32106 -AAAGCTTTTCTTGCGAAACCAAGGTGTCAATATCGTGTATTCTAATGAGAAGACTATGTTTAAA
1 AAAAGCTTTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTAATGAGAAGAATGTGTTTAAG
* * *
32170 GTGCCTATTCTTGAAAAGAATGGGGAATAGTATAAGTATTCATGTTTGTCATATTTAAGAGACAA
66 GTGCCTAATCTTGAAAAGAATGGAGAATAGTAT-AGTATTCATGTTTGTCTTATTTAAGAGACAA
* *
32235 ACTTTGATTATTTCAAAAACGGT-GAAA-
130 ACTTTGATT-TATCAAAAATGGTGGAAAG
* * * * *
32262 AAAAGCTTTTCTTG-TAACACCAAAGCAACAATGTCATGTATCCTAATAAAAAGAATGT-TTCTA
1 AAAAGCTTTTCTTGCGAA-ACCAAAGCATCAATATCATGTATCCTAATGAGAAGAATGTGTT-TA
* ** * * * * * * * *
32325 TA-ATGCCTAATC-ACAAAATGAATGAAGATTAACG-CTAGAATCCTTGTTTGTCTCATTTGAG-
64 -AGGTGCCTAATCTTGAAAA-GAATGGAGAAT-A-GTATAGTATTCATGTTTGTCTTATTTAAGA
* * *
32386 GCACAAGCTTAGACTTTA-CAAAAATTGTTAGG-AAG
125 G-ACAAACTTTGA-TTTATCAAAAA-TGGT-GGAAAG
* * * * * *** *
32421 -AAAGCCTTTCTTGTGAAACCAAAGCATCAATATCGTGTATCCTTATGAGAAGACTACATTTATG
1 AAAAGCTTTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTAATGAGAAGAATGTGTTTAAG
** * * * *
32485 GTGCCTAGCCCTGAAAAGAATGGAGATTAGTATGACTTTTCATGTTTGTCTTATTTAAGAGACAA
66 GTGCCTAATCTTGAAAAGAATGGAGAATAGTAT-AGTATTCATGTTTGTCTTATTTAAGAGACAA
* * *
32550 ACTTTGATTTTATCAAAAACGATGGTAA-
130 ACTTTGA-TTTATCAAAAATGGTGGAAAG
* * * * * **
32578 AAAAGCTTTTCTTACGACACCAAAGCGTCACTGTCATGTATCCTAATGA-ATAGAATGTGTTTTT
1 AAAAGCTTTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTAATGAGA-AGAATGTGTTTAA
* * * * *
32642 GGAT-CCCAATCTTGAAAAGAATGGAG-ATTGTTATGAG-AATCGATGCTTGTCTTATTTAAGTG
65 GG-TGCCTAATCTTGAAAAGAATGGAGAATAG-TAT-AGTATTC-ATGTTTGTCTTATTTAAGAG
** * * *
32704 ATGAAGTTTGATTT-TGAGGAAAATTGG-GCAAAG
126 ACAAACTTTGATTTATCA--AAAA-TGGTGGAAAG
* * * ** * * * * *
32737 AAAAGATTTTCATG-TAAAAGAAATCATCAATATCAT-TAATCTTATTGAGGAGAATGTGTTTAT
1 AAAAGCTTTTCTTGCGAAACCAAAGCATCAATATCATGT-ATCCTAATGAGAAGAATGTGTTTAA
** ** * ** * * *
32800 CATGCCTAATC-AAAAAATGAATGAAG-ATCAAAACTAG-AATCTATGTTTGTCTCATTTGAG-G
65 GGTGCCTAATCTTGAAAA-GAATGGAGAAT-AGTA-TAGTATTC-ATGTTTGTCTTATTTAAGAG
* * *
32861 CACGAACTTAGACTTTA-CATAAATTGGTAGG-AA-
126 -ACAAACTTTGA-TTTATCA-AAAATGGT-GGAAAG
* * * * * *
32894 AAAAGCCTTTCTTGTGAAACCAAAGCACCAATATCGTGTATCCTACTGAGAAGACTGTGTTTAAG
1 AAAAGCTTTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTAATGAGAAGAATGTGTTTAAG
* * * * *
32959 GTGCCTAATCTTGAAAAGAATGGGGAACAGTATGCGTATTCATGTTTGTCTTATTTAAAAAACAA
66 GTGCCTAATCTTGAAAAGAATGGAGAATAGTAT-AGTATTCATGTTTGTCTTATTTAAGAGACAA
* * * *
33024 ACTTTGATTCTTTCCAAAACGGTGGAAGG
130 ACTTTGATT-TATCAAAAATGGTGGAAAG
* * * * * **
33053 AAAAGCTTTTCTTGCGACACCAAAGCAACAATGTCATGCATCCTAATGA-AGGGAATGTGTTTTT
1 AAAAGCTTTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTAATGAGA-AGAATGTGTTTAA
* * * *
33117 GGAT-CCCAATCTTGAAAAGAATGGAG-ATTGTTATGAG-AATCAATGCTTGTCTTATTTAACG-
65 GG-TGCCTAATCTTGAAAAGAATGGAGAATAG-TAT-AGTATTC-ATGTTTGTCTTATTTAA-GA
** * *
33178 GATGAACTTTGATTT-TAAGTAAAATAGG-GCAAAG
125 GACAAACTTTGATTTATCA--AAAAT-GGTGGAAAG
* * * ** ** * *
33212 AAACGATTTTCATGC-AAAAGAATATTATCAATA-CATTTATCCTAATGAGGAGAATGTGTTTAT
1 AAAAGCTTTTCTTGCGAAACCAA-AGCATCAATATCATGTATCCTAATGAGAAGAATGTGTTTA-
* ** * ** * * ** * * **
33275 A--TTCCTAATC-ACAAAATGTGAATGAAGTTTATTGCTAAAATCCATGTTTGTCTCATTTGTG-
64 AGGTGCCTAATCTTGAAAA---GAATGGAGAATAGT-ATAGTATTCATGTTTGTCTTATTTAAGA
* * *
33336 GCACGAACTTAGACTTTAT-AAAAATTAGTGGAAA-
125 G-ACAAACTTTGA-TTTATCAAAAA-TGGTGGAAAG
* * *** * * *
33370 AAAACCTTTT-TCTGCGAAACCAAAGCAGCAATATTGGGTATCGTAATGAGAAGACTATGTTTAA
1 AAAAGCTTTTCT-TGCGAAACCAAAGCATCAATATCATGTATCCTAATGAGAAGAATGTGTTTAA
* * * * *
33434 GTTCCCAAATCTTGAAAAGAATGGGGAATAGTATGAGTATTCATGTTTTTCTTATTTAAGAGACA
65 GGTGCCTAATCTTGAAAAGAATGGAGAATAGTAT-AGTATTCATGTTTGTCTTATTTAAGAGACA
*
33499 AACTTTGATTCTATCAAAAACGGTGGAAAG
129 AACTTTGATT-TATCAAAAATGGTGGAAAG
* * * * ** * **
33529 TAAAGAATTTTCTTGCTACACCAAAGCATCAATGGCAAGTAAACTAA--AGAATGGAATGTGTTT
1 AAAAG-CTTTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTAATGAGAA--GAATGTGTTT
** * * * * * * *
33592 TTGGTTCCCAATCTTGAAAATAATGGAG-ATTGTTATTAG-AATCGATGCTTGTCTTATTTAAGG
63 AAGGTGCCTAATCTTGAAAAGAATGGAGAATAG-TA-TAGTATTC-ATGTTTGTCTTATTTAAGA
** * * *
33655 GATGAACTTTGATTT-TAAGGAAAATAGG-GCAAAT
125 GACAAACTTTGATTTATCA--AAAAT-GGTGGAAAG
* * * * ** * * * * * *
33689 AAAAGATTTCCATGCAAAAGAAAACCATCAATACCAT-TAATCTTAATGAGGAGAATATTTTTAT
1 AAAAGCTTTTCTTGCGAAACCAAAGCATCAATATCATGT-ATCCTAATGAGAAGAATGTGTTTA-
* ** * ** * * * * * *
33753 A-GTGCGTAATC-ACAAAATGAATGAAG-ATCAAAACTAGAATCCACGTTTGGCTCATTTGAG-G
64 AGGTGCCTAATCTTGAAAA-GAATGGAGAAT-AGTA-TAGTATTCATGTTTGTCTTATTTAAGAG
* * ** *
33814 CACGAACTTAGATTT-TACAAAAATTACTGGGAA-
126 -ACAAACTTTGATTTAT-CAAAAA-TGGTGGAAAG
** * * * *
33847 AAAAGCCATTCTTGCAAAACCAAAGGA-CAAATATCATGTATCCTAATGAGAAGACTATGTTTAA
1 AAAAGCTTTTCTTGCGAAACCAAAGCATC-AATATCATGTATCCTAATGAGAAGAATGTGTTTAA
* * * *
33911 AGTGCCTAATCTTGAAAAGAATGG-GAATTGCATGACTATTCATGTTTGTCTTATTTAAGAGACA
65 GGTGCCTAATCTTGAAAAGAATGGAGAATAGTAT-AGTATTCATGTTTGTCTTATTTAAGAGACA
* * **
33975 AACTTTGATTCTGTAAAAAACAGTGGAAAG
129 AACTTTGATT-TATCAAAAATGGTGGAAAG
** * * * *
34005 AAAAGAATCTCTTGCGACACCAAGGCATCAATGTCATGTATCCTAATGA-AGAGAATGTGTTT
1 AAAAGCTTTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTAATGAGA-AGAATGTGTTT
34067 TTGGATCCCA
Statistics
Matches: 4456, Mismatches: 1325, Indels: 915
0.67 0.20 0.14
Matches are distributed among these distances:
150 10 0.00
151 83 0.02
152 13 0.00
155 1 0.00
156 54 0.01
157 458 0.10
158 1653 0.37
159 1566 0.35
160 482 0.11
161 97 0.02
162 39 0.01
ACGTcount: A:0.37, C:0.14, G:0.19, T:0.31
Consensus pattern (157 bp):
AAAAGCTTTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTAATGAGAAGAATGTGTTTAAG
GTGCCTAATCTTGAAAAGAATGGAGAATAGTATAGTATTCATGTTTGTCTTATTTAAGAGACAAA
CTTTGATTTATCAAAAATGGTGGAAAG
Found at i:28562 original size:475 final size:475
Alignment explanation
Indices: 27635--36276 Score: 6527
Period size: 475 Copynumber: 18.1 Consensus size: 475
27625 GGTTGTCATC
27635 AGGCACGAACTTAGACTTTACAAAAATT-G-GCGGAAAAAAGCCTTTCTTGCGAAACCAAAGCAC
1 AGGCACGAACTTAGACTTTACAAAAATTAGTG-GGAAAAAAGCCTTTCTTGCGAAACCAAAGCAC
* *
27698 CAATATCGGGTATCCTAATGAGAAGATTATGTTTAAGGTGCCAAATCTTGAAAAGAATGGGGAAT
65 CAATATCAGGTATCCTAATGAGAAGACTATGTTTAAGGTGCCAAATCTTGAAAAGAATGGGGAAT
* *
27763 AGCATGAGTATTCATGTCTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAATGGTGGAAA
130 AGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAATGGTGGAAA
* *
27828 GAAAAGCTTTTCTTGCGTCACCAAAGCATCAATGTCATGTATCCTAATGAAGAGAATGTGTTTTT
195 AAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAATGAAGAGAATGTGTTTTT
* * * * * *
27893 GAATCCCAATCATGAAAAGAATGGAGATTGTTATGAGAATCGATGGTTGCCTTATTTATGGGATG
260 GGATCCCAATCTTGAAAAGAATGGAGATTGTTATGAGAATCGATGCTTGTCTTATTTAAGAGATG
* ** *
27958 AACTATGATACTAAGTAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAATCAACAATATCA
325 AACTTTGATTTTAAGTAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAATCATCAATATCA
* * *
28023 TTAATCTTAAT-AGAGAGAATGTGTTTATAGTACTTAATCACAAAATAAATGAAGATCAATACTA
390 TTAATCTTAATGAG-GAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCAATACTA
* **
28087 GAACCCGCGTTTGGCTCATTTG
454 GAATCCATGTTTGGCTCATTTG
* * *
28109 AGGCATGAACTTAGACTTTACAAAAATTAGTGGGGAACAAGCCTTTCTTGCGAAACCAACA-CAC
1 AGGCACGAACTTAGACTTTACAAAAATTAGTGGGAAAAAAGCCTTTCTTGCGAAACCAA-AGCAC
* * * *
28173 CAATGTCAGGTATCCTGATGGGAAGACTATGTTTAAGGTGCCAAATCTTGAAATGAATGGGGAAT
65 CAATATCAGGTATCCTAATGAGAAGACTATGTTTAAGGTGCCAAATCTTGAAAAGAATGGGGAAT
* * * * *
28238 AGTATGAGTATTCATGTCTGCCTTATTTAAAAGACAAACTTTGATTCTATCTAAAACGGTGGAAA
130 AGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAATGGTGG-AA
* *
28303 AAAAAAGCTTTTCTTGCGACACCAAAGCAGCAATGTCATGTATCCTAATGAAGAGATTGTGTTTT
194 AAAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAATGAAGAGAATGTGTTTT
* * * * *
28368 TGGATCCTAATCTTGAAAAGAATGGAGATAGTCATGAGAATCGATGCTTGTCTTATTTATGAAAT
259 TGGATCCCAATCTTGAAAAGAATGGAGATTGTTATGAGAATCGATGCTTGTCTTATTTAAGAGAT
* * * *
28433 GAACTATGATATTATGTAAAATAGGGCAACGAAAAGA-TTCCATGCAAAAGAAATCATCAATATC
324 GAACTTTGATTTTAAGTAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAATCATCAATATC
*
28497 ATTAATCTTAATGAGGAGAATGTGTTTGTAGTGCCTAATCACAAAATGAATGAAGATCAATACTA
389 ATTAATCTTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCAATACTA
* *
28562 GAACCCACGTTTGGCTCATTTG
454 GAATCCATGTTTGGCTCATTTG
* * * * ** * * *
28584 AGGTACAAACTTAGACTTTACAGAAATTAGTGGGAAGAAAGTTTTTCTTGCAAAACTAAAGCATC
1 AGGCACGAACTTAGACTTTACAAAAATTAGTGGGAAAAAAGCCTTTCTTGCGAAACCAAAGCACC
** * * * * * * * *
28649 AATATC-GTGTATCCTAATTTGAAGACTATGTTTATGGCGTCTAATCCTAAAAAGAAAGGGGATT
66 AATATCAG-GTATCCTAATGAGAAGACTATGTTTAAGGTGCCAAATCTTGAAAAGAATGGGGAAT
*
28713 AGTCTGAGTATTCATGTTTGTCTTATTTAAGAGGA-AAACTTTGATTCTATCAAAAATGGTGGAA
130 AGTATGAGTATTCATGTTTGTCTTATTTAAGA-GACAAACTTTGATTCTATCAAAAATGGTGGAA
* * * * *
28777 GTAAAAA-CATTTCTTGCAACACCAAAGCATCAGTGTCATGTATCTTAATGAATG-GAATGTGCT
194 -AAAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAATGAA-GAGAATGTG-T
**** * * * * *
28840 AAAAGGTTTCCAATCTTGAAAATAAGGGAGATTGTTACT-AGAATTGATGCTTGTCTTATTTAA-
256 TTTTGGATCCCAATCTTGAAAAGAATGGAGATTGTTA-TGAGAATCGATGCTTGTCTTATTTAAG
* * * * *
28903 AGGATGAACTTTGATTTTAACTAAAATAGAGCAAAAAAAAACGATTTCCAAGCAAAAAAATATCA
320 A-GATGAACTTTGATTTTAAGTAAAATAGGGC-AAAGAAAA-GATTTCCATGCAAAAGAA-ATCA
* * ** * * *
28968 TCAATATCATTTATCCTAATGAGGAGAACATGTTTATAGTGTCTAA-CAACAAACTGAATGAAGT
381 TCAATATCATTAATCTTAATGAGGAGAATGTGTTTATAGTGCCTAATC-ACAAAATGAATGAAGA
* * *
29032 TCATTACTAGAATCCATGTTTGTCTCATTTA
445 TCAATACTAGAATCCATGTTTGGCTCATTTG
* ** * *
29063 AGGCACGAACTTAGACTTTACAAAAATTGGTGAAAAAAAAGCTTTTCCTGCGAAACCAAAGCACC
1 AGGCACGAACTTAGACTTTACAAAAATTAGTGGGAAAAAAGCCTTTCTTGCGAAACCAAAGCACC
* * * * *
29128 AATATCGGGTATCCTAATGAGAAGACTATGTTTAAGTTGCCAAATCCTGAAAAGGATGGGGAGTA
66 AATATCAGGTATCCTAATGAGAAGACTATGTTTAAGGTGCCAAATCTTGAAAAGAATGGGGAATA
* * * * *
29193 GTATGAGTATTCATGTCTGCCTTATTCAAGAGACAAACTTTGATTC-AACTAAAAATGATGGAAA
131 GTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATC-AAAAATGGTGGAAA
* *
29257 AAAAAGCTTTTTTTGTGACACCAAAGCATCAATGTCATGTATCCTAATGAAGAGAATGTGTTTTT
195 AAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAATGAAGAGAATGTGTTTTT
* * **** * * *
29322 GGATCCTAATCGTGAAAAGAATGGAGATTGTCCCAAGAATCGATGCTTGTCATATTTAAGGGATT
260 GGATCCCAATCTTGAAAAGAATGGAGATTGTTATGAGAATCGATGCTTGTCTTATTTAAGAGATG
* * *
29387 AACTATGATATTAAGTAAAACAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATC
325 AACTTTGATTTTAAGTAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAG-AAATCATCAATATC
* * *
29452 TTTAATCATAATGAGGAGAATGTTTTTATAGTGCCTAATCACAAAATGAATGAAGATCAATACTA
389 ATTAATCTTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCAATACTA
* * * *
29517 GAACCCACGTCTAGCTCATTTG
454 GAATCCATGTTTGGCTCATTTG
* * ** *
29539 AGGCACGAACTTAGACTTTACAAAAATTGGTGCGAGGAAAGCCTTTCTTGCGAAAGCAAAGCACC
1 AGGCACGAACTTAGACTTTACAAAAATTAGTGGGAAAAAAGCCTTTCTTGCGAAACCAAAGCACC
* * * * *
29604 AATATCATGTATCCTAATAAGAAGACTATGTTTAAGGTGCTAAATATTGAAAA-AAGTGGAGAAT
66 AATATCAGGTATCCTAATGAGAAGACTATGTTTAAGGTGCCAAATCTTGAAAAGAA-TGGGGAAT
* * * * * **
29668 AGTATGATTATTCATGTTCGTCTTATTTAAAAGATAAACTTTGATTCTATCAAAAATGGTGTAGG
130 AGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAATGGTGGAAA
* * *
29733 TAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTAACCTAATGAATG-GAATGTGGTTT
195 AAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAATGAA-GAGAATGTGTTTT
*
29797 TGGA-CCCAATCTTGAAAATAATGGAGATTGTTACT-AGAATCGATGCTTGTCTTATTTAAGAGA
259 TGGATCCCAATCTTGAAAAGAATGGAGATTGTTA-TGAGAATCGATGCTTGTCTTATTTAAGAGA
* *
29860 TGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTTCATGCTAAATA-AAATCATCAAT
323 TGAACTTTGATTTTAAGTAAAATAGGGCAAAGAAAAGATTTCCATGC-AAA-AGAAATCATCAAT
* * * * * * * * *
29924 ATCATTGATCTTATTAATGAGAATGTTTTTATACTGCCTAATCCCAAAATGAATGAAGATTAACA
386 ATCATTAATCTTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCAATA
*
29989 CTAGAACCCATGTTTGGCTCATTTG
451 CTAGAATCCATGTTTGGCTCATTTG
* * * *
30014 AGGCACGAACTTAAACTTTACAAAAATTGGTGCGAAGAAAGCCTTTCTTGCGAAACCAAAGCACC
1 AGGCACGAACTTAGACTTTACAAAAATTAGTGGGAAAAAAGCCTTTCTTGCGAAACCAAAGCACC
* * *
30079 AATATCATGTATCCTAATAAGAAGACTATGTTTAAGGTGCTAAATCTTGAAAA-AAGTGGGGAAT
66 AATATCAGGTATCCTAATGAGAAGACTATGTTTAAGGTGCCAAATCTTGAAAAGAA-TGGGGAAT
* * * *
30143 AGTATGATTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGTAAG
130 AGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAATGGTGGAAA
* * *
30208 TAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTAACCTAATGAATG-GAATGTGGTTT
195 AAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAATGAA-GAGAATGTGTTTT
*
30272 TGGATCCCAATCTTGAAAATAATGGAGATTGTTACT-AGAATCGATGCTTGTCTTATTTAAGAGA
259 TGGATCCCAATCTTGAAAAGAATGGAGATTGTTA-TGAGAATCGATGCTTGTCTTATTTAAGAGA
* * * * *
30336 TGAACTTTGATTTTAAGGAAAATAGGGTAAAGAAAAGATTTTCATGCTAATGAAAATCATCAATA
323 TGAACTTTGATTTTAAGTAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAG-AAATCATCAATA
* * * * * * * *
30401 TCATTGATCTTATTAATGAGAATGTTTTTATACTGCCTAATCACAAAATGAATGAAGATTAACAC
387 TCATTAATCTTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCAATAC
*
30466 TAGAACCCATGTTTGGCTCATTTG
452 TAGAATCCATGTTTGGCTCATTTG
* ** *
30490 AGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAGGAAGCCTTTCTTGCGAAACCAAGGCACC
1 AGGCACGAACTTAGACTTTACAAAAATTAGTGGGAAAAAAGCCTTTCTTGCGAAACCAAAGCACC
* *
30555 ---A--A--TATCCGAATGAGAAGACTATGTTTAAGGTGCCAGATCTTGAAAA-AAGTGGGGAAT
66 AATATCAGGTATCCTAATGAGAAGACTATGTTTAAGGTGCCAAATCTTGAAAAGAA-TGGGGAAT
* * * * * *
30612 AGTATGACTATTCATGTTAGTGTTATTTAGGAGACAAACTTTGATTCTATCAAAACTGGTAG-AA
130 AGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAATGGTGGAAA
* * * * * *
30676 CAAAAGCTTTTCCTGCGAAACCAAAGCA-CTAATATC-TGGTATCCTAATG-AGAAGACTATGTT
195 AAAAAGCTTTTCTTGCGACACCAAAGCATC-AATGTCAT-GTATCCTAATGAAG-AGAATGTGTT
** * * * * * * *
30738 TAAGG-TGCCAAATCCTGAAAAGAATGGAGAATAG-TACGAGTATTC-ATGTTTGCCTTATTTAA
257 TTTGGAT-CCCAATCTTGAAAAGAATGGAG-ATTGTTATGAG-AATCGATGCTTGTCTTATTTAA
** * * * * * * ** *
30800 GAGACAAACTTTGATTCT-ATTAAAA-ACGATGG-AAAAAAAAGCTTTTCTTG-AGACACCAAAG
319 GAGATGAACTTTGATTTTAAGTAAAATA-G--GGCAAAGAAAAGATTTCCATGCA-A-AAGAAAT
* * * * * * **
30861 CATCAATATCATGT-ATCCTAATGAAGAGAATGTGTTTTTGGATACC-ATTCTTGAAAA-GAATG
379 CATCAATATCAT-TAATCTTAATGAGGAGAATGTGTTTATAG-TGCCTAATC-ACAAAATGAATG
* *** * * * * *
30923 GAGATTGCTACTAGAATCGATGCTTGTCTTATTTA
441 AAGATCAATACTAGAATCCATGTTTGGCTCATTTG
* * * * * * *** * * ** *
30958 AGGGATGAGCTTTGATTTTA-AGGAAAA-TAG-GGCAAAGAAAAAATTTCCATGCAAAAGAAAAT
1 AGGCACGAACTTAGACTTTACA--AAAATTAGTGGGAAA-AAAGCCTTT-CTTGCGAAACCAAAG
* ** * * * * * * * *
31020 CATCAATATC-TTTAATCATAATGAGGAGAATGTTTTTATA-GTGCCTAATC-AGAAAATAAATG
62 CACCAATATCAGGT-ATCCTAATGAGAAGACTATGTTTA-AGGTGCCAAATCTTGAAAA-GAATG
** * * ** * * * * * *
31082 AAG-ATCA--ACGCCAGAACCCACGTTTGGCTCATTT-AGGGCATAAACTTAGACTT-TA-CAAA
124 GGGAAT-AGTATG--AGTATTCATGTTTGTCTTATTTAAGAG-ACAAACTTTGA-TTCTATCAAA
* * * * * * *
31141 AATTGGTGG--GAAAAAGCCTTTCTTGCGAAACCAAAGAACCAATATCGTGTATCCTAATG-AGA
184 AA-TGGTGGAAAAAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAATGAAG-
* * ** * * * * * * *
31203 AGACTATGTTTAAGG-TGCCAAATCTTGAAAA-AAGTGGGGAATAG-GATGACTATTC-ATGTTT
247 AGAATGTGTTTTTGGAT-CCCAATCTTGAAAAGAA-TGGAG-ATTGTTATGA-GAATCGATGCTT
* * * * * * *
31264 GTCTTATTTAAGAGATAAACTTTGATTCT-A-TCAACAA-CGGTG-GAAGTAAAAGCTTTTCTTG
308 GTCTTATTTAAGAGATGAACTTTGATTTTAAGT-AA-AATAGG-GCAAAG-AAAAGATTTCCATG
*** * ** * * * * * *
31325 CAACACCCAAGCATCAATGGCATGTAA-CCTAAAGAATG-GAATGTGTTTGGT-GTTCCCAATCT
369 CAA-AAGAAATCATCAATATCAT-TAATCTTAATG-AGGAGAATGTGTTT-ATAGTGCCTAATC-
** * ** * * * * *
31387 TGAAAAT-CATGGAA-AT-TGTCACTATAATCCATGATTGTCTTATTTA
429 ACAAAATGAAT-GAAGATCAAT-ACTAGAATCCATGTTTGGCTCATTTG
* * * * * ** **
31433 AGGGATGAACTTTA-ATTTTA-AGTAAAA-TAG-GGCAAAGAAA-CGATTTCCAAGC-AAAAGAA
1 AGGCACGAAC-TTAGACTTTACA--AAAATTAGTGGGAAA-AAAGC-CTTT-CTTGCGAAACCAA
* * ** * * * * * * * * **
31492 TATCATCAATATCATTTATACTAATGAGGAGAATGTCTTTGTA-GTACCTAATC-ACAAAATGAA
60 -AGCACCAATATCAGGTATCCTAATGAGAAGACTATGTTT-AAGGTGCCAAATCTTGAAAA-GAA
** * * * * * * * *
31555 TGAAG-TTCGTTACT-AGAATCCATGTTTGTCTCATTTGAG-GCACGAACTTAGACTT-TA-CAA
122 TGGGGAATAG-TA-TGAGTATTCATGTTTGTCTTATTTAAGAG-ACAAACTTTGA-TTCTATCAA
* * * * * * ***
31615 AAATTGGTTG-AAAAAAAGCTTTTCCTGTGAAACCAAAGCAGCAATATTGGGTATCCTAATG-AG
183 AAA-TGGTGGAAAAAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAATGAAG
* * ** * * * * * *
31678 AAGACTATG-TTTAAGTTGCCAAATCTTGAAAAAAATGGGGAATTG-TATGAGTATTC-ATGTTT
247 -AGAATGTGTTTTTGGAT-CCCAATCTTGAAAAGAATGGAG-ATTGTTATGAG-AATCGATGCTT
** * * * * * * *
31740 GTCTTATTTAAGAGACAAACTTCGATTCT-ATTAGAAAT-GGTGGAAAGTAAAGAATTTTCTTGT
308 GTCTTATTTAAGAGATGAACTTTGATTTTAAGTA-AAATAGG-GCAAAGAAAAG-ATTTCCATG-
* * ** * * ** * * * * * * * *
31803 GACACCAAAGCACCAATGGCAAGTAA-CCTAAAGAATG-GAATGTGCTTT-TGGTTCCCAATCTT
369 CAAAAGAAATCATCAATATC-ATTAATCTTAATG-AGGAGAATGTG-TTTATAGTGCCTAATC-A
* * *** * * * * *
31865 GAAAAT-AATGGAGATTGTTACTAGAATCGATGCTTGTCTTATTTA
430 CAAAATGAATGAAGATCAATACTAGAATCCATGTTTGGCTCATTTG
* * * * * * * **
31910 AGGGATGAACTTTGATTTTA-AGGAAAA-TAG-GGCAAATAAAAG-ATTTGCATG-GAAAAAAAA
1 AGGCACGAACTTAGACTTTACA--AAAATTAGTGG-GAA-AAAAGCCTTT-CTTGCG-AAACCAA
* * * * * * * * * * **
31970 ATCATCAATATCA-TTAATCTTAGTAAGGAGAATGTGTTTATA-GTGCCTAATC-ACAAAATGAA
60 AGCACCAATATCAGGT-ATCCTAATGAGAAGACTATGTTTA-AGGTGCCAAATCTTGAAAA-GAA
** * * * * ** *
32032 TGAAG-TTCATTACT-AGAACTCTCA--TTTGGCTCGTTT--GATGTACAAACTTAGACTT-TA-
122 TGGGGAAT-AGTA-TGAGTA-T-TCATGTTTGTCTTATTTAAGA-G-ACAAACTTTGA-TTCTAT
* * * * ** * * *
32089 CAAAAATTGGT-GAGAAGAAAGCTTTTCTTGCGAAACCAAGGTGTCAATATCGTGTATTCTAATG
180 CAAAAA-TGGTGGAAAAAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAATG
* * *** * * * * * *
32153 -AGAAGACTATGTTTAAAG-TGCCTATTCTTGAAAAGAATGGGGAATAG-TATAAGTATTC-ATG
244 AAG-AGAATGTGTTTTTGGAT-CCCAATCTTGAAAAGAATGGAG-ATTGTTATGAG-AATCGATG
* * ** * *
32214 TTTGTCATATTTAAGAGACAAACTTTGATTATT---TCAAAA-ACGGTG-AAA-AAAAGCTTTTC
305 CTTGTCTTATTTAAGAGATGAACTTTGATT-TTAAGT-AAAATA-GG-GCAAAGAAAAGATTTCC
* * ** * * * * * ** *
32273 TTGTAACACCAAAGCAACAATGTCATGT-ATCCTAATAAAAAGAATGT-TTCTATAATGCCTAAT
366 ATGCAA-AAGAAATCATCAATATCAT-TAATCTTAATGAGGAGAATGTGTT-TATAGTGCCTAAT
* ** * *
32336 CACAAAATGAATGAAGATTAACGCTAGAATCCTTGTTTGTCTCATTTG
428 CACAAAATGAATGAAGATCAATACTAGAATCCATGTTTGGCTCATTTG
* * *
32384 AGGCAC-AAGCTTAGACTTTACAAAAATT-GTTAGGAAGAAAGCCTTTCTTGTGAAACCAAAGCA
1 AGGCACGAA-CTTAGACTTTACAAAAATTAG-TGGGAAAAAAGCCTTTCTTGCGAAACCAAAGCA
* * ** * * ** * *
32447 TCAATATC-GTGTATCCTTATGAGAAGACTACATTTATGGTGCCTAGCCCTGAAAAGAATGGAGA
64 CCAATATCAG-GTATCCTAATGAGAAGACTATGTTTAAGGTGCCAAATCTTGAAAAGAATGGGGA
* * * * * *
32511 TTAGTATGACTTTTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTTTATCAAAAACGATGG-
128 ATAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAATGGTGGA
* * * * *
32575 TAAAAAAGCTTTTCTTACGACACCAAAGCGTCACTGTCATGTATCCTAATGAATAGAATGTGTTT
193 AAAAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAATGAAGAGAATGTGTTT
*
32640 TTGGATCCCAATCTTGAAAAGAATGGAGATTGTTATGAGAATCGATGCTTGTCTTATTTAAGTGA
258 TTGGATCCCAATCTTGAAAAGAATGGAGATTGTTATGAGAATCGATGCTTGTCTTATTTAAGAGA
* * * * * *
32705 TGAAGTTTGATTTTGAGGAAAATTGGGCAAAGAAAAGATTTTCATGTAAAAGAAATCATCAATAT
323 TGAACTTTGATTTTAAGTAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAATCATCAATAT
* * *
32770 CATTAATCTTATTGAGGAGAATGTGTTTATCA-TGCCTAATCAAAAAATGAATGAAGATCAAAAC
388 CATTAATCTTAATGAGGAGAATGTGTTTAT-AGTGCCTAATCACAAAATGAATGAAGATCAATAC
* *
32834 TAGAATCTATGTTTGTCTCATTTG
452 TAGAATCCATGTTTGGCTCATTTG
* * * *
32858 AGGCACGAACTTAGACTTTACATAAATTGGTAGGAAAAAAGCCTTTCTTGTGAAACCAAAGCACC
1 AGGCACGAACTTAGACTTTACAAAAATTAGTGGGAAAAAAGCCTTTCTTGCGAAACCAAAGCACC
* * * *
32923 AATATC-GTGTATCCTACTGAGAAGACTGTGTTTAAGGTGCCTAATCTTGAAAAGAATGGGGAAC
66 AATATCAG-GTATCCTAATGAGAAGACTATGTTTAAGGTGCCAAATCTTGAAAAGAATGGGGAAT
* * * * * * *
32987 AGTATGCGTATTCATGTTTGTCTTATTTAAAAAACAAACTTTGATTCTTTCCAAAACGGTGGAAG
130 AGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAATGGTGGAAA
* * * *
33052 GAAAAGCTTTTCTTGCGACACCAAAGCAACAATGTCATGCATCCTAATGAAGGGAATGTGTTTTT
195 AAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAATGAAGAGAATGTGTTTTT
*
33117 GGATCCCAATCTTGAAAAGAATGGAGATTGTTATGAGAATCAATGCTTGTCTTATTTAACG-GAT
260 GGATCCCAATCTTGAAAAGAATGGAGATTGTTATGAGAATCGATGCTTGTCTTATTTAA-GAGAT
* * *
33181 GAACTTTGATTTTAAGTAAAATAGGGCAAAGAAACGATTTTCATGCAAAAGAATATTATCAATA-
324 GAACTTTGATTTTAAGTAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAA-ATCATCAATAT
* * * * * * *
33245 CATTTATCCTAATGAGGAGAATGTGTTTATA-TTCCTAATCACAAAATGTGAATGAAGTTTATTG
388 CATTAATCTTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAA--TGAATGAAGATCAATA
* *
33309 CTAAAATCCATGTTTGTCTCATTTG
451 CTAGAATCCATGTTTGGCTCATTTG
* * * * *
33334 TGGCACGAACTTAGACTTTATAAAAATTAGT-GGAAAAAAACCTTTTTCTGCGAAACCAAAGCAG
1 AGGCACGAACTTAGACTTTACAAAAATTAGTGGGAAAAAAGCCTTTCT-TGCGAAACCAAAGCAC
** * * *
33398 CAATATTGGGTATCGTAATGAGAAGACTATGTTTAAGTTCCCAAATCTTGAAAAGAATGGGGAAT
65 CAATATCAGGTATCCTAATGAGAAGACTATGTTTAAGGTGCCAAATCTTGAAAAGAATGGGGAAT
* *
33463 AGTATGAGTATTCATGTTTTTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAA
130 AGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAATGGTGGAAA
** * * * * ** *
33528 GTAAAGAATTTTCTTGCTACACCAAAGCATCAATGGCAAGTAAACTAAAGAATG-GAATGTGTTT
195 AAAAAG-CTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAATGAA-GAGAATGTGTTT
* * * *
33592 TTGGTTCCCAATCTTGAAAATAATGGAGATTGTTATTAGAATCGATGCTTGTCTTATTTAAGGGA
258 TTGGATCCCAATCTTGAAAAGAATGGAGATTGTTATGAGAATCGATGCTTGTCTTATTTAAGAGA
* * *
33657 TGAACTTTGATTTTAAGGAAAATAGGGCAAATAAAAGATTTCCATGCAAAAGAAAACCATCAATA
323 TGAACTTTGATTTTAAGTAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAG-AAATCATCAATA
* * * * *
33722 CCATTAATCTTAATGAGGAGAATATTTTTATAGTGCGTAATCACAAAATGAATGAAGATCAAAAC
387 TCATTAATCTTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCAATAC
*
33787 TAGAATCCACGTTTGGCTCATTTG
452 TAGAATCCATGTTTGGCTCATTTG
* * * * * *
33811 AGGCACGAACTTAGATTTTACAAAAATTACTGGGAAAAAAGCCATTCTTGCAAAACCAAAGGACA
1 AGGCACGAACTTAGACTTTACAAAAATTAGTGGGAAAAAAGCCTTTCTTGCGAAACCAAAGCACC
* * * *
33876 AATATCATGTATCCTAATGAGAAGACTATGTTTAAAGTGCCTAATCTTGAAAAGAAT-GGGAATT
66 AATATCAGGTATCCTAATGAGAAGACTATGTTTAAGGTGCCAAATCTTGAAAAGAATGGGGAATA
* * * * ** *
33940 GCATGACTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTGTAAAAAACAGTGGAAAG
131 GTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAATGGTGGAAAA
** * *
34005 AAAAGAATCTCTTGCGACACCAAGGCATCAATGTCATGTATCCTAATGAAGAGAATGTGTTTTTG
196 AAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAATGAAGAGAATGTGTTTTTG
* ** * * * * * *
34070 GATCCCATTCTTGAATCGAATGGAGAATGTTATGAGAATCAATGTTTGTTTTTTTTAAGGGATGA
261 GATCCCAATCTTGAAAAGAATGGAGATTGTTATGAGAATCGATGCTTGTCTTATTTAAGAGATGA
* *
34135 ACTATG-TTATTAAGTAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATTATCAATATC
326 ACTTTGATT-TTAAGTAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAG-AAATCATCAATATC
*
34199 ATTAATCTTATTGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCAATACTA
389 ATTAATCTTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCAATACTA
* **
34264 GAACCCACATTTGGCTCATTTG
454 GAATCCATGTTTGGCTCATTTG
** * * * * *
34286 AGGCATAAACTTAGACTTTACAAAAATTAGTGGGGAACATGCCTTTCTTGTGAAACCAAAGCATC
1 AGGCACGAACTTAGACTTTACAAAAATTAGTGGGAAAAAAGCCTTTCTTGCGAAACCAAAGCACC
** * * ** ***** * * **** ***
34351 AATATCTTGTATCCTATTTAGTTG--TGAAACCAAAGCAT--CAATATCTTGTATCCTATTTAGA
66 AATATCAGGTATCCTAATGAGAAGACT-ATGTTTAAG-GTGCCAA-ATCTTGAAAAGAATGGGGA
* * * * * * * * *** * * **
34412 AGACTAT--GT-TT-TTG-GTGTCTAATCCTAA-AAAGAAA-GAGGATTAGTATGAGTATTGATG
128 ATAGTATGAGTATTCATGTTTGTCTTAT-TTAAGAGACAAACTTTGATT-CTATCA--A-AAATG
** ** * * * * * * * *
34470 TTTGTCTTATTTAAGAGACAAA-CTTTGATT-CTATCA-AAAATG-GTGGAA-GTAAAAGCTTTT
188 ---GT-GGA---AA-A-A-AAAGCTTTTCTTGCGA-CACCAAA-GCAT-CAATGT-CATG-TATC
* * * ** *** * * * *
34530 CT--TGCGACACGAAAGCATCAAT-G-T--C-ATGTATGCTAATGAATGGA-ATTTGTTTTTG-G
238 CTAATG-AAGA-GAATGTGTTTTTGGATCCCAATCT-TG-AAAAGAATGGAGA-TTG-TTATGAG
* * * * * **
34586 -TTCCCAAT-CTTGAAAATAATGGAGATTGTTACTAGA-ATTGATGCTTGTCTTATTTAAGGGAT
297 AAT--CGATGCTTG----T-CT---TA-T-TTA--AGAGA-TGA-ACTT-TGAT-TTTAA--G-T
* *
34648 GAACTTTGATTTTAAGTAAAATAAGGCAAAGAAACGATTTCCATGCAAAAGAATATCATCAATAT
341 --A-----A----AA-T--AG---GGCAAAGAAAAGATTTCCATGCAAAAGAA-ATCATCAATAT
* * * *
34713 CATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGTTC-ATGTC
388 CATTAATCTTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCAAT-AC
* *
34777 TAGAATCCATGTTTGTCTCCTTTG
452 TAGAATCCATGTTTGGCTCATTTG
* * * ** **
34801 AGGCACAAACTTAGACTTTATAAAAATTGGTGAAAAAAAAGCCTTTCTTGCGAAACCAAAGCTGC
1 AGGCACGAACTTAGACTTTACAAAAATTAGTGGGAAAAAAGCCTTTCTTGCGAAACCAAAGCACC
* * * *
34866 AATATCGGGTATCCTAATGAGAAGACTATGTTTAAGGTGCTAAATATTGAAAA-AAGTGGAGAAT
66 AATATCAGGTATCCTAATGAGAAGACTATGTTTAAGGTGCCAAATCTTGAAAAGAA-TGGGGAAT
* * * **
34930 AGTATGATTATTCATGTTCGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAATGGTGTAGG
130 AGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAATGGTGGAAA
* * * *
34995 TAAAAGCTTTTCTTGCGACACCAAAGCATCAATGGCATGTAACCTAAAGAATG-GAATGTGTTTT
195 AAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAATGAA-GAGAATGTGTTTT
* * * * * *
35059 TGGTTCCTAATCTTGAAAAAAATGGAGATTGTTA-GTAGAATCGATGCATGTCTTATTTAAGGGT
259 TGGATCCCAATCTTGAAAAGAATGGAGATTGTTATG-AGAATCGATGCTTGTCTTATTTAAGAGA
* * * **
35123 TGAACTTTGATTTTAAGGAAAATAGGGTAAAGAAAAGATTTTCATGCAAAAGAAAATCAGAAATA
323 TGAACTTTGATTTTAAGTAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAG-AAATCATCAATA
* * * * *
35188 TCATTAATCTTATTAAGGAGAATGTTTTTATAATGCCTAATCACAAAATGAATGAAGATCAATAT
387 TCATTAATCTTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCAATAC
* * *
35253 TAGAACCCACGTTTGGCTCATCTG
452 TAGAATCCATGTTTGGCTCATTTG
* * * * * *
35277 AGGTACAAACTTAGACTTTACAAAAATTAGTGGGAAGAAAGCTTTTCTTGCGAAACCAAGGCATC
1 AGGCACGAACTTAGACTTTACAAAAATTAGTGGGAAAAAAGCCTTTCTTGCGAAACCAAAGCACC
* * * ** * * *
35342 AATATC-GTGTGTCCTAATGACAAGACTATGTTTATGGTTTCTAATCTTGAAAAGAAAGGGGATT
66 AATATCAG-GTATCCTAATGAGAAGACTATGTTTAAGGTGCCAAATCTTGAAAAGAATGGGGAAT
* * *
35406 AGTTTGAGTATTCATGTTTGTTTTATTTAAGAGGC-AA-----A---TA--AAAAATGGTGGAAG
130 AGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAATGGTGGAA-
* * * *
35460 TAAAAA-CTTTTCTTGGGACTCCAAAGCATCAATGGCATGTATCCTAATGAATGA-AATGTGTTT
194 AAAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAATGAA-GAGAATGTGTTT
* * * * *
35523 TTGGTTTCCAATCTTGAAAATAATGGAGATTGTTACT-AGAATCAATGCTTGTCTTATTTAAGGG
258 TTGGATCCCAATCTTGAAAAGAATGGAGATTGTTA-TGAGAATCGATGCTTGTCTTATTTAAGAG
* * * *
35587 ATGAACTTTGATTTTAAGTAAAATACGACAAAGAAACGATTTCCAAGCAAAAGAATATCATCAAT
322 ATGAACTTTGATTTTAAGTAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAA-ATCATCAAT
* * * * * * **
35652 ATCCTTTATCCTAATGAAGAGAATGTGTTTATAGTGCCTAATCACAAAAGGAATGAAGTTCTTTA
386 ATCATTAATCTTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCAATA
* ** *
35717 CTAGAATCTATGAATGTCTCATTTG
451 CTAGAATCCATGTTTGGCTCATTTG
* * ** * * *
35742 AGGCACGAACTTAGAGTTTACAAAAATTGGTGAAAAAAAAGCTTTTCCTACGAAACCAAAGCACC
1 AGGCACGAACTTAGACTTTACAAAAATTAGTGGGAAAAAAGCCTTTCTTGCGAAACCAAAGCACC
* *
35807 AATATCAGGTATCCTAATGAGAAGATTATGTTTAAGTTGCCAAATCTTGAAAAGAATGGGGAATA
66 AATATCAGGTATCCTAATGAGAAGACTATGTTTAAGGTGCCAAATCTTGAAAAGAATGGGGAATA
* * * * * * *
35872 GTATGAGTATTCATGTCTGCCTTACTTAAGAGACAAACTTTGTTTCTATTAAAAACGATGG-AAA
131 GTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAATGGTGGAAAA
* * *
35936 AAAAGCTTTTCTTGCAACACCAAAGCATCAATCTCATGTATCCTAATGAAGAGAATTTGTTTTTG
196 AAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAATGAAGAGAATGTGTTTTTG
* * * *
36001 AATCCCAATCTTGAAAAGAATGGAGATTGTTACGAGAATCGATGCTTGTCTTATTTAAGGGATTA
261 GATCCCAATCTTGAAAAGAATGGAGATTGTTATGAGAATCGATGCTTGTCTTATTTAAGAGATGA
* * * * *
36066 A-TTATGATATTATGTAAAATAGGGCAAAGAAAAGATTTCAATGCAAAAG-TATCAACAATATCA
326 ACTT-TGATTTTAAGTAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAATCATCAATATCA
* * *
36129 TTAATCTTAATAAGGAGAAAGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCAAAACTAG
390 TTAATCTTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCAATACTAG
* * *
36194 AATCCACGTTTGGTTGATTTG
455 AATCCATGTTTGGCTCATTTG
* * *
36215 AGGCACGAACTTAGACTTTACAAAAATTGGTTGGAAAAAAGCCTTTCTCGCGAAACCAAAGC
1 AGGCACGAACTTAGACTTTACAAAAATTAGTGGGAAAAAAGCCTTTCTTGCGAAACCAAAGC
36277 TCCACTATTG
Statistics
Matches: 6700, Mismatches: 1150, Indels: 637
0.79 0.14 0.08
Matches are distributed among these distances:
464 2 0.00
465 377 0.06
466 9 0.00
467 17 0.00
468 208 0.03
469 142 0.02
470 16 0.00
471 9 0.00
472 18 0.00
473 342 0.05
474 496 0.07
475 1998 0.30
476 1495 0.22
477 668 0.10
478 165 0.02
479 308 0.05
480 17 0.00
481 19 0.00
482 16 0.00
483 13 0.00
484 1 0.00
485 1 0.00
486 1 0.00
489 1 0.00
490 3 0.00
491 2 0.00
492 5 0.00
493 2 0.00
494 2 0.00
495 5 0.00
496 6 0.00
497 3 0.00
498 4 0.00
499 5 0.00
500 1 0.00
501 3 0.00
502 1 0.00
503 1 0.00
505 1 0.00
506 1 0.00
507 1 0.00
508 12 0.00
509 19 0.00
510 15 0.00
511 15 0.00
512 5 0.00
513 3 0.00
514 6 0.00
515 187 0.03
516 19 0.00
517 3 0.00
518 4 0.00
519 3 0.00
520 5 0.00
521 15 0.00
522 4 0.00
ACGTcount: A:0.37, C:0.14, G:0.19, T:0.31
Consensus pattern (475 bp):
AGGCACGAACTTAGACTTTACAAAAATTAGTGGGAAAAAAGCCTTTCTTGCGAAACCAAAGCACC
AATATCAGGTATCCTAATGAGAAGACTATGTTTAAGGTGCCAAATCTTGAAAAGAATGGGGAATA
GTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAATGGTGGAAAA
AAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAATGAAGAGAATGTGTTTTTG
GATCCCAATCTTGAAAAGAATGGAGATTGTTATGAGAATCGATGCTTGTCTTATTTAAGAGATGA
ACTTTGATTTTAAGTAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAATCATCAATATCAT
TAATCTTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCAATACTAGA
ATCCATGTTTGGCTCATTTG
Found at i:32692 original size:158 final size:156
Alignment explanation
Indices: 27639--34129 Score: 1186
Period size: 159 Copynumber: 41.0 Consensus size: 156
27629 GTCATCAGGC
* * * * * * * *
27639 ACGAACTTAGACTTTA-CAAAAATTGGCGGAA-AAAAGCCTTTCTTGCGAAACCAAAGCACCAAT
1 ACGAACTTTGATTTTATCAAAAA-CGGTGGAAGAAAAGCTTTTCTTACGACACCAAAGCATCAAT
** * * * * * *
27702 ATCGGGTATCCTAATG-AGAAGATTATGTTTAAGG-TGCCAAATCTTGAAAAGAATGGGGAATAG
65 ATCATGTATCCTAATGAAG-AGAATGTGTTTATGGATGCCCAATCTTGAAAAGAATGGAG-ATTG
* * *
27765 CATGAGTATTCATGTCTGTCTTATTTAAGAG
128 TATGAG-AATCATGTTTGTCTTATTTAAG-G
* * * * *
27796 ACAAACTTTGATTCTATCAAAAATGGTGGAAAGAAAAGCTTTTCTTGCGTCACCAAAGCATCAAT
1 ACGAACTTTGATTTTATCAAAAACGGTGG-AAGAAAAGCTTTTCTTACGACACCAAAGCATCAAT
* * * *
27861 GTCATGTATCCTAATGAAGAGAATGTGTTTTTGAAT-CCCAATCATGAAAAGAATGGAGATTGTT
65 ATCATGTATCCTAATGAAGAGAATGTGTTTATGGATGCCCAATCTTGAAAAGAATGGAGATTG-T
* * *
27925 ATGAGAATCGATGGTTGCCTTATTTATGGG
129 ATGAGAATC-ATGTTTGTCTTATTTA-AGG
* * * * * * * * * * ** * *
27955 ATGAACTATGATACTAAGT-AAAATA-GG-GCAAAGAAAAGATTTCCATGC-AAAAGAAATCAAC
1 ACGAACTTTGAT-TTTA-TCAAAA-ACGGTG-GAAGAAAAGCTTTTCTTACGACACCAAAGCATC
* * * ** ** * *
28016 AATATCAT-TAATCTTAAT-AGAGAGAATGTGTTTATAG-TACTTAATC-ACAAAATAAATGAAG
62 AATATCATGT-ATCCTAATGA-AGAGAATGTGTTTATGGATGCCCAATCTTGAAAA-GAATGGAG
** * ** * * *
28077 ATCAATACT-AGAACCCGCGTTTGGCTCATTTGAGG
124 AT-TGTA-TGAGAA-TCATGTTTGTCTTATTTAAGG
* * * ** * * * * *
28112 CATGAACTTAGACTTTA-CAAAAATTAGTGG-GGAACAAGCCTTTCTTGCGAAACCAACA-CACC
1 -ACGAACTTTGATTTTATCAAAAA-CGGTGGAAGAA-AAGCTTTTCTTACGACACCAA-AGCATC
* * * * * * * * * *
28174 AATGTCAGGTATCCTGATG-GGAAGACTATGTTTAAGG-TGCCAAATCTTGAAATGAATGGGGAA
62 AATATCATGTATCCTAATGAAG-AGAATGTGTTTATGGATGCCCAATCTTGAAAAGAATGGAG-A
* * * * *
28237 TAGTATGAGTATTCATGTCTGCCTTATTTAAAAG
125 TTGTATGAG-AATCATGTTTGTCTTATTT-AAGG
* * * * * *
28271 ACAAACTTTGATTCTATCTAAAACGGTGGAAAAAAAAAGCTTTTCTTGCGACACCAAAGCAGCAA
1 ACGAACTTTGATTTTATCAAAAACGGTGG--AAGAAAAGCTTTTCTTACGACACCAAAGCATCAA
* * * * *
28336 TGTCATGTATCCTAATGAAGAGATTGTGTTTTTGGAT-CCTAATCTTGAAAAGAATGGAGATAGT
64 TATCATGTATCCTAATGAAGAGAATGTGTTTATGGATGCCCAATCTTGAAAAGAATGGAGATTGT
* * *
28400 CATGAGAATCGATGCTTGTCTTATTTATGAA
129 -ATGAGAATC-ATGTTTGTCTTATTTAAG-G
* * * * * * * * * * ** *
28431 ATGAACTATGATATTATGTAAAATA-GG-GCAACGAAAAG-ATTCCATGC-AAAAGAAATCATCA
1 ACGAACTTTGATTTTAT-CAAAA-ACGGTGGAA-GAAAAGCTTTTCTTACGACACCAAAGCATCA
* * * * * ** *
28492 ATATCAT-TAATCTTAATGAGGAGAATGTGTTTGTAG-TGCCTAATC-ACAAAATGAATGAAGAT
63 ATATCATGT-ATCCTAATGAAGAGAATGTGTTTATGGATGCCCAATCTTGAAAA-GAATGGAGAT
** * * * * *
28554 CAATACT-AGAACCCACGTTTGGCTCATTTGAGG
126 -TGTA-TGAGAA-TCATGTTTGTCTTATTTAAGG
* * * *** * * * * *
28587 TACAAACTTAGACTTTA-CAGAAATTAGTGGGAAG-AAAGTTTTTCTTGCAAAACTAAAGCATCA
1 -ACGAACTTTGATTTTATCA-AAAACGGT-GGAAGAAAAGCTTTTCTTACGACACCAAAGCATCA
* * * * * * * * * *
28650 ATATCGTGTATCCTAATTTG-A-AGACTATGTTTATGG-CGTCTAATCCTAAAAAGAAAGGGGAT
63 ATATCATGTATCCTAA--TGAAGAGAATGTGTTTATGGATGCCCAATCTTGAAAAGAATGGAGAT
* *
28712 TAGTCTGAGTATTCATGTTTGTCTTATTTAAGAGG
126 T-GTATGAG-AATCATGTTTGTCTTATTT-A-AGG
* * * * * * * *
28747 A-AAACTTTGATTCTATCAAAAATGGTGGAAGTAAAAACATTTCTTGCAACACCAAAGCATCAGT
1 ACGAACTTTGATTTTATCAAAAACGGTGGAAG-AAAAGCTTTTCTTACGACACCAAAGCATCAAT
* * ** * ** * *
28811 GTCATGTATCTTAATGAATG-GAATGTGCTAAAAGG-TTTCCAATCTTGAAAATAAGGGAGATTG
65 ATCATGTATCCTAATGAA-GAGAATGTG-TTTATGGATGCCCAATCTTGAAAAGAATGGAGATTG
* *
28874 TTACT-AGAATTGATGCTTGTCTTATTTAAAGG
128 -TA-TGAGAA-TCATGTTTGTCTTATTT-AAGG
* * * ** * * * * * * * * ** *
28906 ATGAACTTTGATTTTAACTAAAATAGAGCAAAAAAAAACGATTTC-CAAGCAAAAAAATATCATC
1 ACGAACTTTGATTTTATCAAAAACGGTG-GAAGAAAAGC-TTTTCTTACG-ACACCAA-AGCATC
* * ** * * * *** * *
28970 AATATCATTTATCCTAATGAGGAGAACATGTTTATAG-TGTCTAA-CAACAAACTGAATGAAG-T
62 AATATCATGTATCCTAATGAAGAGAATGTGTTTATGGATGCCCAATCTTGAAA-AGAATGGAGAT
* *
29032 TCATTACT-AGAATCCATGTTTGTCTCATTTAAGG
126 T--GTA-TGAGAAT-CATGTTTGTCTTATTTAAGG
* * * * * * * * *
29066 CACGAACTTAGACTTTA-CAAAAATTGGTGAAAAAAAAGCTTTTCCTGCGAAACCAAAGCACCAA
1 -ACGAACTTTGATTTTATCAAAAA-CGGTGGAAGAAAAGCTTTTCTTACGACACCAAAGCATCAA
** * * * * * * * * *
29130 TATCGGGTATCCTAATG-AGAAGACTATGTTTA-AGTTGCCAAATCCTGAAAAGGATGGGGAGTA
64 TATCATGTATCCTAATGAAG-AGAATGTGTTTATGGATGCCCAATCTTGAAAAGAATGGAGA-TT
* * * *
29193 GTATGAGTATTCATGTCTGCCTTATTCAAGAG
127 GTATGAG-AATCATGTTTGTCTTATTTAAG-G
* * * * * * * **
29225 ACAAACTTTGA-TTCAACTAAAAATGATGGAAAAAAAAGCTTTTTTTGTGACACCAAAGCATCAA
1 ACGAACTTTGATTTTATC-AAAAACGGTGG-AAGAAAAGCTTTTCTTACGACACCAAAGCATCAA
* * * *
29289 TGTCATGTATCCTAATGAAGAGAATGTGTTTTTGGAT-CCTAATCGTGAAAAGAATGGAGATTGT
64 TATCATGTATCCTAATGAAGAGAATGTGTTTATGGATGCCCAATCTTGAAAAGAATGGAGATTGT
*** * *
29353 CCCAAGAATCGATGCTTGTCATATTTAAGGG
129 -ATGAGAATC-ATGTTTGTCTTATTTAA-GG
** * * *** * * * * * * * ** *
29384 ATTAACTATGATATTAAGTAAAACAGG-GCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAA
1 ACGAACTTTGATTTTATCAAAAAC-GGTG-GAAGAAAAGCTTTTCTTACGACACCAAAGCATCAA
* * * * * * ** *
29448 TATC-TTTAATCATAATGAGGAGAATGTTTTTATAG-TGCCTAATC-ACAAAATGAATGAAGATC
64 TATCATGT-ATCCTAATGAAGAGAATGTGTTTATGGATGCCCAATCTTGAAAA-GAATGGAGAT-
** * * * * *
29510 AATACT-AGAACCCACGTCTAG-CTCATTTGAGG
126 TGTA-TGAGAA-TCATGT-TTGTCTTATTTAAGG
* * * * * * * * *
29542 CACGAACTTAGACTTTA-CAAAAATTGGTGCG-AGGAAAGCCTTTCTTGCGAAAGCAAAGCACCA
1 -ACGAACTTTGATTTTATCAAAAA-CGGTG-GAAGAAAAGCTTTTCTTACGACACCAAAGCATCA
* * * ** *
29605 ATATCATGTATCCTAAT-AAGAAGACTATGTTTAAGG-TGCTAAATATTGAAAA-AAGTGGAGAA
63 ATATCATGTATCCTAATGAAG-AGAATGTGTTTATGGATGCCCAATCTTGAAAAGAA-TGGAG-A
* * * * *
29667 TAGTATGATTATTCATGTTCGTCTTATTTAAAAG
125 TTGTATGA-GAATCATGTTTGTCTTATTT-AAGG
** * * * * *
29701 ATAAACTTTGATTCTATCAAAAATGGTGTAGGTAAAAGCTTTTCTTGCGACACCAAAGCATCAAT
1 ACGAACTTTGATTTTATCAAAAACGGTGGAAG-AAAAGCTTTTCTTACGACACCAAAGCATCAAT
* * *
29766 GTCATGTAACCTAATGAATG-GAATGTGGTTT-TGGA--CCCAATCTTGAAAATAATGGAGATTG
65 ATCATGTATCCTAATGAA-GAGAATGT-GTTTATGGATGCCCAATCTTGAAAAGAATGGAGATTG
*
29827 TTACT-AGAATCGATGCTTGTCTTATTTAAGAG
128 -TA-TGAGAATC-ATGTTTGTCTTATTTAAG-G
* ** * * * * * * ** *
29859 ATGAACTTTGATTTTAAGGAAAATA-GG-GCAAAGAAAAGATTTTCATGCTAAATAAAATCATCA
1 ACGAACTTTGATTTT-ATCAAAA-ACGGTG-GAAGAAAAGCTTTTCTTACGACACCAAAGCATCA
* * * * ** *
29922 ATATCAT-TGAT-CTTATTAATGAGAATGTTTTTAT--ACTGCCTAATC-CCAAAATGAATGAAG
63 ATATCATGT-ATCCTAATGAA-GAGAATGTGTTTATGGA-TGCCCAATCTTGAAAA-GAATGGAG
** * * * *
29982 ATTAACACT-AGAACCCATGTTTGGCTCATTTGAGG
124 ATT-GTA-TGAGAA-TCATGTTTGTCTTATTTAAGG
** * * * * * *
30017 CACGAACTTAAACTTTA-CAAAAATTGGTGCGAAG-AAAGCCTTTCTTGCGAAACCAAAGCACCA
1 -ACGAACTTTGATTTTATCAAAAA-CGGTG-GAAGAAAAGCTTTTCTTACGACACCAAAGCATCA
* * * ** *
30080 ATATCATGTATCCTAAT-AAGAAGACTATGTTTAAGG-TGCTAAATCTTGAAAA-AAGTGGGGAA
63 ATATCATGTATCCTAATGAAG-AGAATGTGTTTATGGATGCCCAATCTTGAAAAGAA-TGGAG-A
* * *
30142 TAGTATGATTATTCATGTTTGTCTTATTTAAGAG
125 TTGTATGA-GAATCATGTTTGTCTTATTTAAG-G
* * * *
30176 ACAAACTTTGATTCTATCAAAAACGGTGTAAGTAAAAGCTTTTCTTGCGACACCAAAGCATCAAT
1 ACGAACTTTGATTTTATCAAAAACGGTGGAAG-AAAAGCTTTTCTTACGACACCAAAGCATCAAT
* * *
30241 GTCATGTAACCTAATGAATG-GAATGTGGTTT-TGGAT-CCCAATCTTGAAAATAATGGAGATTG
65 ATCATGTATCCTAATGAA-GAGAATGT-GTTTATGGATGCCCAATCTTGAAAAGAATGGAGATTG
*
30303 TTACT-AGAATCGATGCTTGTCTTATTTAAGAG
128 -TA-TGAGAATC-ATGTTTGTCTTATTTAAG-G
* ** * * * * * * ** *
30335 ATGAACTTTGATTTTAAGGAAAATAGGGT-AAAGAAAAGATTTTCATGCTA-ATGAAAATCATCA
1 ACGAACTTTGATTTT-ATCAAAA-ACGGTGGAAGAAAAGCTTTTCTTACGACA-CCAAAGCATCA
* * * * ** *
30398 ATATCAT-TGAT-CTTATTAATGAGAATGTTTTTAT--ACTGCCTAATC-ACAAAATGAATGAAG
63 ATATCATGT-ATCCTAATGAA-GAGAATGTGTTTATGGA-TGCCCAATCTTGAAAA-GAATGGAG
** * * * *
30458 ATTAACACT-AGAACCCATGTTTGGCTCATTTGAGG
124 ATT-GTA-TGAGAA-TCATGTTTGTCTTATTTAAGG
* * * * * * * *
30493 CACGAACTTAGACTTTA-CAAAAATTGGTGGGAAG-GAAGCCTTTCTTGCGAAACCAAGGCA-C-
1 -ACGAACTTTGATTTTATCAAAAA-CGGT-GGAAGAAAAGCTTTTCTTACGACACCAAAGCATCA
* * * * * *
30554 ----CA-ATATCCGAATG-AGAAGACTATGTTTAAGG-TG-CCAGATCTTGAAAA-AAGTGGGGA
63 ATATCATGTATCCTAATGAAG-AGAATGTGTTTATGGATGCCCA-ATCTTGAAAAGAA-TGGAG-
* * * * * *
30610 ATAGTATGACTATTCATGTTAGTGTTATTTAGGAG
124 ATTGTATGA-GAATCATGTTTGTCTTATTTAAG-G
* * * * * * *
30645 ACAAACTTTGATTCTATC-AAAACTGGTAGAACAAAAGCTTTTCCTGCGAAACCAAAGCA-CTAA
1 ACGAACTTTGATTTTATCAAAAAC-GGTGGAAGAAAAGCTTTTCTTACGACACCAAAGCATC-AA
* * * * *
30708 TATC-TGGTATCCTAATG-AGAAGACTATGTTTAAGG-TGCCAAATCCTGAAAAGAATGGAGAAT
64 TATCAT-GTATCCTAATGAAG-AGAATGTGTTTATGGATGCCCAATCTTGAAAAGAATGGAG-AT
* * * *
30770 AGTACGAGTATTCATGTTTGCCTTATTTAAGAG
126 TGTATGAG-AATCATGTTTGTCTTATTTAAG-G
* * * * *
30803 ACAAACTTTGATTCTATTAAAAACGATGGAAAAAAAAGCTTTTCTTGA-GACACCAAAGCATCAA
1 ACGAACTTTGATTTTATCAAAAACGGTGG-AAGAAAAGCTTTTCTT-ACGACACCAAAGCATCAA
* * *
30867 TATCATGTATCCTAATGAAGAGAATGTGTTTTTGGAT-ACCATTCTTGAAAAGAATGGAGATTGC
64 TATCATGTATCCTAATGAAGAGAATGTGTTTATGGATGCCCAATCTTGAAAAGAATGGAGATTG-
*
30931 TACT-AGAATCGATGCTTGTCTTATTTAAGGG
128 TA-TGAGAATC-ATGTTTGTCTTATTTAA-GG
* * ** * ** * * * * * ** *
30962 ATGAGCTTTGATTTTAAGGAAAATA-GG-GCAAAGAAAAAATTTCCATGCAAAAGAAAATCATCA
1 ACGAACTTTGATTTT-ATCAAAA-ACGGTG-GAAGAAAAGCTTTTCTTACGACACCAAAGCATCA
* * * * * * * * *
31025 ATATC-TTTAATCATAATGAGGAGAATGTTTTTATAG-TGCCTAATC-AGAAAATAAATGAAGA-
63 ATATCATGT-ATCCTAATGAAGAGAATGTGTTTATGGATGCCCAATCTTGAAAA-GAATGGAGAT
** * * * * * *
31086 TCAACGCCAGAACCCACGTTTGGCTCATTTAGGG
126 TGTATG--AGAA-TCATGTTTGTCTTATTTAAGG
** * * * * * * * * *
31120 CATAAACTTAGACTTTA-CAAAAATTGGTGGGA-AAAAGCCTTTCTTGCGAAACCAAAGAACCAA
1 -ACGAACTTTGATTTTATCAAAAA-CGGTGGAAGAAAAGCTTTTCTTACGACACCAAAGCATCAA
* * * * * *
31183 TATCGTGTATCCTAATG-AGAAGACTATGTTTAAGG-TGCCAAATCTTGAAAA-AAGTGGGGAAT
64 TATCATGTATCCTAATGAAG-AGAATGTGTTTATGGATGCCCAATCTTGAAAAGAA-TGGAG-AT
* * * *
31245 AGGATGACTATTCATGTTTGTCTTATTTAAGAG
126 TGTATGA-GAATCATGTTTGTCTTATTTAAG-G
** * * * * *
31278 ATAAACTTTGATTCTATCAACAACGGTGGAAGTAAAAGCTTTTCTTGCAACACCCAAGCATCAAT
1 ACGAACTTTGATTTTATCAAAAACGGTGGAAG-AAAAGCTTTTCTTACGACACCAAAGCATCAAT
** * * ** *
31343 GGCATGTAACCTAAAGAATG-GAATGTG-TT-TGG-TGTTCCCAATCTTGAAAATCATGGAAATT
65 ATCATGTATCCTAATGAA-GAGAATGTGTTTATGGATG--CCCAATCTTGAAAAGAATGGAGATT
* *
31404 GTCACT-ATAATCCATGATTGTCTTATTTAAGGG
127 GT-A-TGAGAAT-CATGTTTGTCTTATTTAA-GG
* * * * * * * * ** *
31437 ATGAACTTTAATTTTAAGT-AAAATA-GG-GCAAAGAAACG-ATTTC-CAAGCAAAAGAATATCA
1 ACGAACTTTGATTTT-A-TCAAAA-ACGGTG-GAAGAAAAGCTTTTCTTACG-ACACCAA-AGCA
* * * * * * * * ** *
31497 TCAATATCATTTATACTAATGAGGAGAATGTCTTTGTAG-TACCTAATC-ACAAAATGAATGAAG
60 TCAATATCATGTATCCTAATGAAGAGAATGTGTTTATGGATGCCCAATCTTGAAAA-GAATGGAG
* *
31560 -TTCGTTACT-AGAATCCATGTTTGTCTCATTTGAGG
124 ATT-G-TA-TGAGAAT-CATGTTTGTCTTATTTAAGG
* * * * * * ** * *
31595 CACGAACTTAGACTTTA-CAAAAATTGGTTGAAAAAAAGCTTTTCCTGTGAAACCAAAGCAGCAA
1 -ACGAACTTTGATTTTATCAAAAA-CGGTGGAAGAAAAGCTTTTCTTACGACACCAAAGCATCAA
*** * * * * * * *
31659 TATTGGGTATCCTAATG-AGAAGACTATGTTTA-AGTTGCCAAATCTTGAAAAAAATGGGGAATT
64 TATCATGTATCCTAATGAAG-AGAATGTGTTTATGGATGCCCAATCTTGAAAAGAATGGAG-ATT
*
31722 GTATGAGTATTCATGTTTGTCTTATTTAAGAG
127 GTATGAG-AATCATGTTTGTCTTATTTAAG-G
* * * * * * * * ** *
31754 ACAAACTTCGATTCTATTAGAAATGGTGGAAAGTAAAGAATTTTCTTGTGACACCAAAGCACCAA
1 ACGAACTTTGATTTTATCAAAAACGGTGG-AAGAAAAG-CTTTTCTTACGACACCAAAGCATCAA
** * * * * *
31819 TGGCAAGTAACCTAAAGAATG-GAATGTGCTTT-TGG-TTCCCAATCTTGAAAATAATGGAGATT
64 TATCATGTATCCTAATGAA-GAGAATGTG-TTTATGGATGCCCAATCTTGAAAAGAATGGAGATT
*
31881 GTTACT-AGAATCGATGCTTGTCTTATTTAAGGG
127 G-TA-TGAGAATC-ATGTTTGTCTTATTTAA-GG
* ** * * * * * * * ** *
31914 ATGAACTTTGATTTTAAGGAAAATA-GG-GCAAATAAAAGATTTGCAT-GGAAAAAAAAATCATC
1 ACGAACTTTGATTTT-ATCAAAA-ACGGTG-GAAGAAAAGCTTTTCTTACG-ACACCAAAGCATC
* * * * ** *
31976 AATATCAT-TAATCTTAGT-AAGGAGAATGTGTTTATAG-TGCCTAATC-ACAAAATGAATGAAG
62 AATATCATGT-ATCCTAATGAA-GAGAATGTGTTTATGGATGCCCAATCTTGAAAA-GAATGGAG
* * * ** * *
32037 -TTCATTACT-AGAACTC-TCATTTGGCTCGTTTGATGT
124 ATT--GTA-TGAGAA-TCAT-GTTTGTCTTATTT-AAGG
* * * * * * * **
32073 ACAAACTTAGACTTTA-CAAAAATTGGTGAGAAG-AAAGCTTTTCTTGCGAAACCAAGGTGTCAA
1 ACGAACTTTGATTTTATCAAAAA-CGGTG-GAAGAAAAGCTTTTCTTACGACACCAAAGCATCAA
* * * * ** * * * *
32136 TATCGTGTATTCTAATG-AGAAGACTATGTTTAAAG-TGCCTATTCTTGAAAAGAATGGGGAATA
64 TATCATGTATCCTAATGAAG-AGAATGTGTTTATGGATGCCCAATCTTGAAAAGAATGGAG-ATT
* * *
32199 GTATAAGTATTCATGTTTGTCATATTTAAGAG
127 GTATGAG-AATCATGTTTGTCTTATTTAAG-G
* * *** *
32231 ACAAACTTTGATTATT-TCAAAAACGGT-GAAAAAAAGCTTTTCTTGTAACACCAAAGCAACAAT
1 ACGAACTTTGATT-TTATCAAAAACGGTGGAAGAAAAGCTTTTCTTACGACACCAAAGCATCAAT
* * * * * ** *
32294 GTCATGTATCCTAATAAAAAGAATGT-TTCTAT-AATGCCTAATC-ACAAAATGAATGAAGATT-
65 ATCATGTATCCTAATGAAGAGAATGTGTT-TATGGATGCCCAATCTTGAAAA-GAATGGAGATTG
* * * * *
32355 AACGCTAGAATCCTTGTTTGTCTCATTTGAGG
128 TATG--AGAAT-CATGTTTGTCTTATTTAAGG
* * * * * ** *
32387 CAC-AAGCTTAGACTTTA-CAAAAATTGTTAGGAAG-AAAGCCTTTCTTGTGAAACCAAAGCATC
1 -ACGAA-CTTTGATTTTATCAAAAA-CGGT-GGAAGAAAAGCTTTTCTTACGACACCAAAGCATC
* * * *** * ** *
32449 AATATCGTGTATCCTTATG-AGAAGACTACATTTATGG-TGCCTAGCCCTGAAAAGAATGGAGAT
62 AATATCATGTATCCTAATGAAG-AGAATGTGTTTATGGATGCCCAATCTTGAAAAGAATGGAGAT
***
32512 TAGTATGACTTTTCATGTTTGTCTTATTTAAGAG
126 T-GTATGA-GAATCATGTTTGTCTTATTTAAG-G
* * * *
32546 ACAAACTTTGATTTTATCAAAAACGATGGTAA-AAAAGCTTTTCTTACGACACCAAAGCGTCACT
1 ACGAACTTTGATTTTATCAAAAACGGTGG-AAGAAAAGCTTTTCTTACGACACCAAAGCATCAAT
* * *
32610 GTCATGTATCCTAATGAATAGAATGTGTTTTTGGAT-CCCAATCTTGAAAAGAATGGAGATTGTT
65 ATCATGTATCCTAATGAAGAGAATGTGTTTATGGATGCCCAATCTTGAAAAGAATGGAGATTG-T
*
32674 ATGAGAATCGATGCTTGTCTTATTTAAGTG
129 ATGAGAATC-ATGTTTGTCTTATTTAAG-G
* * ** ** * * ** *
32704 ATGAAGTTTGATTTTGAGGAAAATTGG-GCAAAGAAAAGATTTTCATGTA--A-AAGAAATCATC
1 ACGAACTTTGATTTT-ATCAAAAACGGTG-GAAGAAAAGCTTTTC-T-TACGACACCAAAGCATC
* * * * * ** *
32765 AATATCAT-TAATCTTATTGAGGAGAATGTGTTTAT-CATGCCTAATC-AAAAAATGAATGAAGA
62 AATATCATGT-ATCCTAATGAAGAGAATGTGTTTATGGATGCCCAATCTTGAAAA-GAATGGAGA
*** * *
32827 TCAAAACT-AGAATCTATGTTTGTCTCATTTGAGG
125 T-TGTA-TGAGAATC-ATGTTTGTCTTATTTAAGG
* * ** * ** * *
32861 CACGAACTTAGACTTTA-CATAAATTGGTAGGAA-AAAAGCCTTTCTTGTGAAACCAAAGCACCA
1 -ACGAACTTTGATTTTATCA-AAAACGGT-GGAAGAAAAGCTTTTCTTACGACACCAAAGCATCA
* * * * * * *
32924 ATATCGTGTATCCTACTG-AGAAGACTGTGTTTAAGG-TGCCTAATCTTGAAAAGAATGGGGAAC
63 ATATCATGTATCCTAATGAAG-AGAATGTGTTTATGGATGCCCAATCTTGAAAAGAATGGAG-AT
* * * **
32987 AGTATGCGTATTCATGTTTGTCTTATTTAAAAA
126 TGTATGAG-AATCATGTTTGTCTTATTT-AAGG
* * * *
33020 ACAAACTTTGATTCTT-TCCAAAACGGTGGAAGGAAAAGCTTTTCTTGCGACACCAAAGCAACAA
1 ACGAACTTTGATT-TTATCAAAAACGGTGGAA-GAAAAGCTTTTCTTACGACACCAAAGCATCAA
* * * *
33084 TGTCATGCATCCTAATGAAGGGAATGTGTTTTTGGAT-CCCAATCTTGAAAAGAATGGAGATTGT
64 TATCATGTATCCTAATGAAGAGAATGTGTTTATGGATGCCCAATCTTGAAAAGAATGGAGATTG-
*
33148 TATGAGAATCAATGCTTGTCTTATTTAACGG
128 TATGAGAATC-ATGTTTGTCTTATTTAA-GG
* * * * * * * ** **
33179 ATGAACTTTGATTTTAAGT-AAAATA-GG-GCAAAGAAACGATTTTCATGC-AAAAGAATATTAT
1 ACGAACTTTGATTTT-A-TCAAAA-ACGGTG-GAAGAAAAGCTTTTCTTACGACACCAA-AGCAT
* * * * ** *
33240 CAATA-CATTTATCCTAATGAGGAGAATGTGTTTAT--ATTCCTAATC-ACAAAATGTGAATGAA
61 CAATATCATGTATCCTAATGAAGAGAATGTGTTTATGGATGCCCAATCTTGAAAA---GAATGGA
* * **
33301 G-TT-TATTGCTAAAATCCATGTTTGTCTCATTTGTGG
123 GATTGTA-TG--AGAAT-CATGTTTGTCTTATTTAAGG
* * ** * * * * *
33337 CACGAACTTAGACTTTAT-AAAAATTAGTGGAAAAAAACCTTTT-TCTGCGAAACCAAAGCAGCA
1 -ACGAACTTTGATTTTATCAAAAA-CGGTGGAAGAAAAGCTTTTCT-TACGACACCAAAGCATCA
*** * * * * * *
33400 ATATTGGGTATCGTAATG-AGAAGACTATGTTTA-AG-TTCCCAAATCTTGAAAAGAATGGGGAA
63 ATATCATGTATCCTAATGAAG-AGAATGTGTTTATGGATGCCC-AATCTTGAAAAGAATGGAG-A
* * *
33462 TAGTATGAGTATTCATGTTTTTCTTATTTAAGAG
125 TTGTATGAG-AATCATGTTTGTCTTATTTAAG-G
* * * * * *
33496 ACAAACTTTGATTCTATCAAAAACGGTGGAAAGTAAAGAATTTTCTTGCTACACCAAAGCATCAA
1 ACGAACTTTGATTTTATCAAAAACGGTGG-AAGAAAAG-CTTTTCTTACGACACCAAAGCATCAA
** * ** * * * *
33561 TGGCAAGTAAACTAAAGAATG-GAATGTGTTTTTGG-TTCCCAATCTTGAAAATAATGGAGATTG
64 TATCATGTATCCTAATGAA-GAGAATGTGTTTATGGATGCCCAATCTTGAAAAGAATGGAGATTG
* *
33624 TTATTAGAATCGATGCTTGTCTTATTTAAGGG
128 -TATGAGAATC-ATGTTTGTCTTATTTAA-GG
* ** * * * * * * * * ** *
33656 ATGAACTTTGATTTTAAGGAAAATA-GG-GCAAATAAAAGATTTCCATGCAAAAGAAAACCATCA
1 ACGAACTTTGATTTT-ATCAAAA-ACGGTG-GAAGAAAAGCTTTTCTTACGACACCAAAGCATCA
* * * * * * ** ** *
33719 ATACCAT-TAATCTTAATGAGGAGAATATTTTTATAG-TGCGTAATC-ACAAAATGAATGAAGAT
63 ATATCATGT-ATCCTAATGAAGAGAATGTGTTTATGGATGCCCAATCTTGAAAA-GAATGGAGAT
*** * * * *
33781 CAAAACT-AGAATCCACGTTTGGCTCATTTGAGG
126 -TGTA-TGAGAAT-CATGTTTGTCTTATTTAAGG
* * ** * * * *
33814 CACGAACTTAGATTTTA-CAAAAATTACTG-GGAA-AAAAGCCATTCTTGCAAAACCAAAGGA-C
1 -ACGAACTTTGATTTTATC-AAAA--ACGGTGGAAGAAAAGCTTTTCTTACGACACCAAAGCATC
* * ** *
33875 AAATATCATGTATCCTAATG-AGAAGACTATGTTTAAAG-TGCCTAATCTTGAAAAGAATGG-GA
62 -AATATCATGTATCCTAATGAAG-AGAATGTGTTTATGGATGCCCAATCTTGAAAAGAATGGAG-
* * *
33937 ATTGCATGACTATTCATGTTTGTCTTATTTAAGAG
124 ATTGTATGA-GAATCATGTTTGTCTTATTTAAG-G
* * * * * ** * * *
33972 ACAAACTTTGATTCTGTAAAAAACAGTGGAAAGAAAAGAATCTCTTGCGACACCAAGGCATCAAT
1 ACGAACTTTGATTTTATCAAAAACGGTGG-AAGAAAAGCTTTTCTTACGACACCAAAGCATCAAT
* * * ** *
34037 GTCATGTATCCTAATGAAGAGAATGTGTTTTTGGAT-CCCATTCTTGAATCGAATGGAGAATGTT
65 ATCATGTATCCTAATGAAGAGAATGTGTTTATGGATGCCCAATCTTGAAAAGAATGGAGATTG-T
* *
34101 ATGAGAATCAATGTTTGTTTTTTTTAAGG
129 ATGAGAATC-ATGTTTGTCTTATTTAAGG
34130 GATGAACTAT
Statistics
Matches: 4525, Mismatches: 1337, Indels: 943
0.66 0.20 0.14
Matches are distributed among these distances:
150 9 0.00
151 77 0.02
152 15 0.00
155 7 0.00
156 68 0.02
157 476 0.11
158 1607 0.36
159 1608 0.36
160 501 0.11
161 126 0.03
162 31 0.01
ACGTcount: A:0.37, C:0.14, G:0.19, T:0.31
Consensus pattern (156 bp):
ACGAACTTTGATTTTATCAAAAACGGTGGAAGAAAAGCTTTTCTTACGACACCAAAGCATCAATA
TCATGTATCCTAATGAAGAGAATGTGTTTATGGATGCCCAATCTTGAAAAGAATGGAGATTGTAT
GAGAATCATGTTTGTCTTATTTAAGG
Found at i:34387 original size:39 final size:39
Alignment explanation
Indices: 34333--34410 Score: 156
Period size: 39 Copynumber: 2.0 Consensus size: 39
34323 CATGCCTTTC
34333 TTGTGAAACCAAAGCATCAATATCTTGTATCCTATTTAG
1 TTGTGAAACCAAAGCATCAATATCTTGTATCCTATTTAG
34372 TTGTGAAACCAAAGCATCAATATCTTGTATCCTATTTAG
1 TTGTGAAACCAAAGCATCAATATCTTGTATCCTATTTAG
34411 AAGACTATGT
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
39 39 1.00
ACGTcount: A:0.33, C:0.18, G:0.13, T:0.36
Consensus pattern (39 bp):
TTGTGAAACCAAAGCATCAATATCTTGTATCCTATTTAG
Found at i:38215 original size:475 final size:472
Alignment explanation
Indices: 37059--38909 Score: 2519
Period size: 475 Copynumber: 3.9 Consensus size: 472
37049 CATCACACTG
* * * * * * **
37059 TTTGAGGCACGAACCTAGACTTTTCAAAACTTGATGGGAAAAAAGCCTTTCCTGCTCATCCAAAG
1 TTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGAGAAAAAAGCCTTTCTTGCGAATCCAAAG
*
37124 CACCAATATTGTGTATCCTAATGAGAAGACTATGTTTACA-GTGCCTAATCTTGAAAAGAATGGA
66 CACCAATATTGTGTATCCTAATGAGAAGACTATGTTTA-AGGTGCCTAATCTTGAAAAGAATGGG
* * * * * *
37188 GAATAGTTTAAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCTAAAATGGTG
130 GAATAGTATGAGTATTCAAGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGCG
* * * *
37253 GAAATAACAGCTTTTCTTCCGACATGAAAGCATA-AGCGTCATGTATCCTAATGAAGAGAATGTG
195 AAAAGAAAAGCTTTTCTTCCG--ATGAAAGCA-ACAACGTCATGTATCCTAATGAAGAGAATGTG
* *
37317 TTTTTGGATCCCAATCTTGAAAAGAAT-GAGATTCTTACGAGAAATTAGGCTTGTCCTTTTTAAG
257 TTTTTGGATCCCAATCTTGAAAAGAATGGAGATTGTTAC--GAAATGAGGCTTGTCCTTTTTAAG
*
37381 GGATGAAA-TTTGATATTAA-GTAAATAGGGCAAAGAAAAGATTTCCATGTAAAA-AAAATCATT
320 GGAT-AAACTTTGATATTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGTAAAAGAAAATCATT
* * *
37443 AATATCATTTATCCTAATGAGTAGAATGTATTTATAGTGCCTAATCAAAAAATGAATGAATTTCA
384 AATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCAAAAAATGAATGAAGTTCA
*
37508 TTACTAGAATCCAAGTTTGTCTCA
449 TTACTAGAATCCATGTTTGTCTCA
*
37532 TTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGAGAAAAAAGCCTTTCTTGCGAATCGAAAG
1 TTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGAGAAAAAAGCCTTTCTTGCGAATCCAAAG
** ** **
37597 TGCCAATATCATGTATCCTAATGAGAAGACTATGTTTAAGGTGCCTAATCTTGAAAAGAATTAGG
66 CACCAATATTGTGTATCCTAATGAGAAGACTATGTTTAAGGTGCCTAATCTTGAAAAGAATGGGG
* * *
37662 AATAGTACGAGTATTCAAGTTTGTCTTATTTAAGAGACAAACTTTGATTCTTTCAAAAACGGTGA
131 AATAGTATGAGTATTCAAGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGCGA
* * * *
37727 AAAGAAAAGCTTTTCTTGCGATGCCAAAGCAACAATGTCATCTATCCTAATGAAGAAAATGTGTT
196 AAAGAAAAGCTTTTCTTCCGATG--AAAGCAACAACGTCATGTATCCTAATGAAGAGAATGTGTT
* * * *
37792 TTTGGATCCCAATCTTCAAAAGAATGGAAATTGTTACGGAAATCGATGCTTGT-TTTATTTAAGG
259 TTTGGATCCCAATCTTGAAAAGAATGGAGATTGTTAC-GAAAT-GAGGCTTGTCCTT-TTTAAGG
* * *
37856 GATGAACTTTGATATTAAGGAAAATAGGGTAAAGAAAAGATTTCCACGTAAAAGAAAATCATTAA
321 GATAAACTTTGATATTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGTAAAAGAAAATCATTAA
* ** * * * *
37921 TATCTTTTATCCTAATGAGGAGAACATGTTTACAGTGCCTAATCCAAAAATGAATGAAGATCGTT
386 TATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCAAAAAATGAATGAAGTTCATT
* *
37986 TCTAGAATCTATGTTTGTCTCA
451 ACTAGAATCCATGTTTGTCTCA
* *
38008 TTTGAGGCACGAACTTAGACTTTTCAAAAATTGGTGAGAAAAAAGCCTTTTTTGCGAATCCAAAG
1 TTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGAGAAAAAAGCCTTTCTTGCGAATCCAAAG
* * *
38073 CACAAATATTGT-TATCCTAATGAGAAAACTATGTTTACA-GAGCCTAATCTTGAAAAGAATGGG
66 CACCAATATTGTGTATCCTAATGAGAAGACTATGTTTA-AGGTGCCTAATCTTGAAAAGAATGGG
* * * *
38136 GAATAGTATGAGTATTCATGTTTATCTTATTTAAGAAACAAACTTTGATTCTATCAAAAATGGC-
130 GAATAGTATGAGTATTCAAGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGCG
* * * *
38200 AGAAATAAAAGCTTTTCTTCCAACATGAAAGCATCAACGTCATGTATCCTAATGAAGAGAATTTG
195 A-AAAGAAAAGCTTTTCTTCC--GATGAAAGCAACAACGTCATGTATCCTAATGAAGAGAATGTG
* * * *
38265 TTTTTGGATCCCAATCTTAAAAAGAATGGAGATTATTACGAGAATCGAGGCTTATCCTTTTTATG
257 TTTTTGGATCCCAATCTTGAAAAGAATGGAGATTGTTACGA-AAT-GAGGCTTGTCCTTTTTAAG
* *
38330 GGATAAACTTTGATATTAAGTAAAATAGGGCAAAGAAAAGATTTCCATGTAAAAAAAAATTCATT
320 GGATAAACTTTGATATTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGTAAAAGAAAA-TCATT
*
38395 AATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAAACAAAAAATGAATGAAGTTCA
384 AATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCAAAAAATGAATGAAGTTCA
* *
38460 TTACCAGAATCCATGCTTGTCTCA
449 TTACTAGAATCCATGTTTGTCTCA
* *
38484 TTTGAGGCACAAACTTAGACTTTACAAAAATTGGTGGGAAAAAAGCCTTTCTTGCGAATCCAAAG
1 TTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGAGAAAAAAGCCTTTCTTGCGAATCCAAAG
** * * *
38549 TGCCAATATCGTGTATCCTAATGAGAAGACTATGTTTAAGGTGCCTAATCATAAAAAGAATGGGG
66 CACCAATATTGTGTATCCTAATGAGAAGACTATGTTTAAGGTGCCTAATCTTGAAAAGAATGGGG
*
38614 AATAGTATGAGTATTCAAGTTTGTCTTATTTAAGAG--AAACTTTGATTCTTTCAAAAACGGCGA
131 AATAGTATGAGTATTCAAGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGCGA
* ** * * * * *
38677 AAAGAAAAGCTTTTCTTGCGACACCAAAGCAATAATGCCATTTATCCTAATGAAGAGAATGTATT
196 AAAGAAAAGCTTTTCTTCCG--ATGAAAGCAACAACGTCATGTATCCTAATGAAGAGAATGTGTT
*
38742 TTTGGATCCCAATCTTGAAAAGAATGGAGATTGTTACGAAAT---GCTTGTCCTTTTTATGGGAT
259 TTTGGATCCCAATCTTGAAAAGAATGGAGATTGTTACGAAATGAGGCTTGTCCTTTTTAAGGGAT
* * *
38804 AAACTTTGATATTAAGTAAAATAGGGCAAAG-AAAGATTTCCATGTAAAAGAAACTCATTTATAT
324 AAACTTTGATATTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGTAAAAGAAAATCATTAATAT
38868 CATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCA
389 CATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCA
38910 TGAAAAGAAT
Statistics
Matches: 1214, Mismatches: 142, Indels: 49
0.86 0.10 0.03
Matches are distributed among these distances:
468 50 0.04
469 21 0.02
470 50 0.04
471 3 0.00
472 2 0.00
473 253 0.21
474 43 0.04
475 400 0.33
476 310 0.26
477 82 0.07
ACGTcount: A:0.37, C:0.14, G:0.18, T:0.31
Consensus pattern (472 bp):
TTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGAGAAAAAAGCCTTTCTTGCGAATCCAAAG
CACCAATATTGTGTATCCTAATGAGAAGACTATGTTTAAGGTGCCTAATCTTGAAAAGAATGGGG
AATAGTATGAGTATTCAAGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGCGA
AAAGAAAAGCTTTTCTTCCGATGAAAGCAACAACGTCATGTATCCTAATGAAGAGAATGTGTTTT
TGGATCCCAATCTTGAAAAGAATGGAGATTGTTACGAAATGAGGCTTGTCCTTTTTAAGGGATAA
ACTTTGATATTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGTAAAAGAAAATCATTAATATCA
TTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCAAAAAATGAATGAAGTTCATTACTAG
AATCCATGTTTGTCTCA
Found at i:38918 original size:310 final size:311
Alignment explanation
Indices: 38553--39219 Score: 920
Period size: 310 Copynumber: 2.1 Consensus size: 311
38543 CCAAAGTGCC
* * * *
38553 AATATCGTGTATCCTAATGAGAAGACTATGTTTA-AGGTGCCTAATCATAAAAAGAATGGGGAAT
1 AATATCATTTATCCTAATGAGAAGAATGTGTTTATA-GTGCCTAATCATAAAAAGAATGGGGAAT
*
38617 AGTATGAGTATTCAAGTTTGTCTTATTTAAGAGAAACTTTGATTCTTTCAAAAACGGCGAAAAG-
65 AGTATGAGTATTCAAGTTTATCTTATTTAAGAGAAACTTTGATTCTTTCAAAAACGGCG-AAAGT
* *
38681 AAAAGCTTTTCTTGCGACACCAAAGCAAT-AATGCCATT-TATCCTAATGAA-GAGAATGTATTT
129 AAAAGCTTTTCTTACAACACCAAA-CAATCAATGCC-TTGTATCCTAATGAATG-GAATGTATTT
* * * *
38743 TTGGATCCCAATCTTGAAAAGAATGGAGATTGTT-A-CGAA-ATGCTTGTCCTTTTTATGGGATA
191 TTGGATCCCAATCTTGAAAAGAATGGAGATTGTTAAGAGAACATGCTTGTCATATTTAAGGGATA
* *
38805 AACTTTGATATTAAGTAAAATAGGGCAAAGAAAGATTTCCATGTAAAAGAA-ACTCATT
256 AACTTTGATATTAAGTAAAATAGGGCAAA-AAA-ATTTCCATGCAAAAGAATA-TCATG
* * *
38863 TATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCATGAAAAGAATGGGGAATA
1 AATATCATTTATCCTAATGAGAAGAATGTGTTTATAGTGCCTAATCATAAAAAGAATGGGGAATA
* * *
38928 GTATGAGTATTCAAGTTTATCTTATTTAAGAGAAACTTTGATTCTTTCAAAAATGGTGGAAGTAA
66 GTATGAGTATTCAAGTTTATCTTATTTAAGAGAAACTTTGATTCTTTCAAAAACGGCGAAAGTAA
* * *
38993 AAGCTTTTCTTACAACACCAAACGATCAATGCCTTGTATCCTAATGAATGGAATGTGTTTTTGGT
131 AAGCTTTTCTTACAACACCAAACAATCAATGCCTTGTATCCTAATGAATGGAATGTATTTTTGGA
* * *
39058 TCCCAATCTTGAAAATAATGGAGATTGTTAAGAGAATCGATGTTTGTCATATTTAAGGGATGAAC
196 TCCCAATCTTGAAAAGAATGGAGATTGTTAAGAGAA-C-ATGCTTGTCATATTTAAGGGATAAAC
* * *
39123 TTTGATTTTAAGTAAAATAGGGCAAAACATTTTCCATGCAAAAGAATATCATG
259 TTTGATATTAAGTAAAATAGGGCAAAAAAATTTCCATGCAAAAGAATATCATG
*
39176 AATATCATTTATCGTAATGAGAAGAATGTGTTTATAGTGCCTAA
1 AATATCATTTATCCTAATGAGAAGAATGTGTTTATAGTGCCTAA
39220 ACACAAAATA
Statistics
Matches: 315, Mismatches: 31, Indels: 19
0.86 0.08 0.05
Matches are distributed among these distances:
309 8 0.03
310 192 0.61
311 3 0.01
312 3 0.01
313 60 0.19
314 3 0.01
315 46 0.15
ACGTcount: A:0.36, C:0.12, G:0.19, T:0.33
Consensus pattern (311 bp):
AATATCATTTATCCTAATGAGAAGAATGTGTTTATAGTGCCTAATCATAAAAAGAATGGGGAATA
GTATGAGTATTCAAGTTTATCTTATTTAAGAGAAACTTTGATTCTTTCAAAAACGGCGAAAGTAA
AAGCTTTTCTTACAACACCAAACAATCAATGCCTTGTATCCTAATGAATGGAATGTATTTTTGGA
TCCCAATCTTGAAAAGAATGGAGATTGTTAAGAGAACATGCTTGTCATATTTAAGGGATAAACTT
TGATATTAAGTAAAATAGGGCAAAAAAATTTCCATGCAAAAGAATATCATG
Found at i:39318 original size:781 final size:791
Alignment explanation
Indices: 38084--39695 Score: 2193
Period size: 781 Copynumber: 2.0 Consensus size: 791
38074 ACAAATATTG
* * * * *
38084 TTATCCTAATGA-GAAAACTATGTTTACAGAGCCTAATCTTGAAAAGAATGGGGAATAGTATGAG
1 TTATCCTAATGAGGAGAA-TGTGTTTATAGTGCCTAATCATGAAAAGAATGGGGAATAGTATGAG
*
38148 TATTCATGTTTATCTTATTTAAGAAACAAACTTTGATTCTATCAAAAATGGCAGAAATAAAAGCT
65 TATTCAAGTTTATCTTATTTAAG-AACAAACTTTGATTCTATCAAAAATGGCAGAAATAAAAGCT
* ** * *
38213 TTTCTTCCAACATGAAAGCATCAACGTCATGTATCCTAATGAAGAGAATTTGTTTTTGGATCCCA
129 TTTCTTACAACACCAAAGCATCAACGCCATGTATCCTAATGAAGAGAATGTGTTTTTGGATCCCA
* * * *
38278 ATCTTAAAAAGAATGGAGATTATTACGAGAATCGAGGCTTATCCTTTTTATGGGATAAACTTTGA
194 ATCTTAAAAAGAATGGAGATTATTAAGAGAATCGAGGCTTATCATATTTAAGGGATAAACTTTGA
* *
38343 TATTAAGTAAAATAGGGCAAAGAAAAGATTTCCATGTAAAAAAAAATTCATTAATATCATTTATC
259 TATTAAGTAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAAAAAATTCATGAATATCATTTATC
*
38408 CTAATGAGGAGAATGTGTTTATAGTGCCTAAACAAAAAATGAATGAAGTTCATTACCAGAATCCA
324 CTAATGAGAAGAATGTGTTTATAGTGCCTAAACAAAAAATGAATGAAGTTCATTACCAGAATCCA
* * **
38473 TGCTTGTCTCATTTGAGGCACAAACTTAGACTTTACAAAAATTGGTGGGAAAAAAGCCTTTCTTG
389 GGCTTGTCTCAATTGAGGCACAAACTTAGACTTTACAAAAATTGGTGAAAAAAAAGCCTTTCTTG
* ** *
38538 CGAATCCAAAGTGCCAATATC-GTGTATCCTAATGAGAAGACTATGTTTAAGGTGCCTAATCATA
454 CGAAACCAAAGCACCAATATCAG-GTATCCTAATGAGAAGACTATGTTTAAGGTGCCAAATCATA
* * * *
38602 AAAAGAATGGGGAATAGTATGAGTATTCAAGTTTGTCTTATTTAAGA-G-AAACTTTGATTCTTT
518 AAAAGAATGGGGAATAGTATGAGTATTCAAGTCTGCCTTACTTAAGAGGCAAACTTTGATTCTAT
*
38665 CAAAAACGGCGAAAAGAAAAGCTTTTCTTGCGACACCAAAGCAAT-AATGCCATTTATCCTAATG
583 CAAAAACGGCGAAAAGAAAAGCTTTTCTTGCGACACCAAAGC-ATCAATGCCATGTATCCTAATG
38729 -AAGAGAATGTATTTTTGGATCCCAATCTTGAAAAGAATGGAGATTGTTAC-GAA-ATGCTTGTC
647 AAAG-GAATGTATTTTTGGATCCCAATCTTGAAAAGAATGGAGATTGTTACAGAACATGCTTGT-
* * * *
38791 CTT-TTTATGGGATAAACTTTGATATTAAGTAAAATAGGG-CAAAGAAA-GATTTCCATGTAAAA
710 CTTATTTAAGAGATAAACTTTGATATTAAGTAAAATAGGGTCAAA-AAACGATTTCCACGCAAAA
**
38853 GAA-ACTCATTTATATCAT
774 GAATA-TCATGAATATCAT
38871 TTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCATGAAAAGAATGGGGAATAGTATGAGT
1 TTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCATGAAAAGAATGGGGAATAGTATGAGT
* * ** *
38936 ATTCAAGTTTATCTTATTTAAG-AGAAACTTTGATTCTTTCAAAAATGGTGGAAGTAAAAGCTTT
66 ATTCAAGTTTATCTTATTTAAGAACAAACTTTGATTCTATCAAAAATGGCAGAAATAAAAGCTTT
* * *
39000 TCTTACAACACCAAA-CGATCAATGCCTTGTATCCTAATGAATG-GAATGTGTTTTTGGTTCCCA
131 TCTTACAACACCAAAGC-ATCAACGCCATGTATCCTAATGAA-GAGAATGTGTTTTTGGATCCCA
* * * * * * *
39063 ATCTTGAAAATAATGGAGATTGTTAAGAGAATCGATGTTTGTCATATTTAAGGGATGAACTTTGA
194 ATCTTAAAAAGAATGGAGATTATTAAGAGAATCGAGGCTTATCATATTTAAGGGATAAACTTTGA
* * * * *
39128 TTTTAAGTAAAATAGGGC-AA-AACA-TTTTCCATGCAAAAGAATA-TCATGAATATCATTTATC
259 TATTAAGTAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAAAAAATTCATGAATATCATTTATC
* * *
39189 GTAATGAGAAGAATGTGTTTATAGTGCCTAAACACAAAAT-ATATGAAGTTCATTACTAGAATCC
324 CTAATGAGAAGAATGTGTTTATAGTGCCTAAACAAAAAATGA-ATGAAGTTCATTACCAGAATCC
* * **
39253 AGGTTTGTCTCAATTGAGGCACGAACTTAGACTTTACAAAAATTGGTGAAAAAAAATTCTTTCTT
388 AGGCTTGTCTCAATTGAGGCACAAACTTAGACTTTACAAAAATTGGTGAAAAAAAAGCCTTTCTT
* * ** *
39318 GTGAAACCAAAGCACCAATATCAGGTATCCTAATGAGAAGACTATGTTTAGGGTGCCAAATTTTG
453 GCGAAACCAAAGCACCAATATCAGGTATCCTAATGAGAAGACTATGTTTAAGGTGCCAAATCATA
*
39383 AAAAGAATGGGGAATAGTATGAGTATTCATGTCTGCCTTACTTAAGAGGCAAACTTTGATTCTAT
518 AAAAGAATGGGGAATAGTATGAGTATTCAAGTCTGCCTTACTTAAGAGGCAAACTTTGATTCTAT
* * * * *
39448 CAAAAATGGTGGAAAGAAAAGCTTTTCTTGTGACACCAAAGCATCAATGTCATGTATCCTAATGA
583 CAAAAACGGCGAAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGCCATGTATCCTAATGA
* * *
39513 AAGGAATGTGTTTTTGGTTCTCAATCTTGAAAAGAATGGAGATTGTTACTAGAATCGATGCTTGT
648 AAGGAATGTATTTTTGGATCCCAATCTTGAAAAGAATGGAGATTGTTAC-AGAA-C-ATGCTTGT
* * * *
39578 CTTATTTAAGAGATGAACTTTGATTTTTAGTAAAATAGGGTTAAAAAACGATTTCCACGCAAAAG
710 CTTATTTAAGAGATAAACTTTGATATTAAGTAAAATAGGGTCAAAAAACGATTTCCACGCAAAAG
*
39643 AATATTATGAATATCAT
775 AATATCATGAATATCAT
* *
39660 TTATCGTAATGAGGAGAATGTGTTTGTAGTGCCTAA
1 TTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAA
39696 ACACAAAATG
Statistics
Matches: 722, Mismatches: 85, Indels: 34
0.86 0.10 0.04
Matches are distributed among these distances:
780 1 0.00
781 229 0.32
782 19 0.03
783 115 0.16
784 6 0.01
785 162 0.22
786 1 0.00
787 79 0.11
788 46 0.06
789 63 0.09
790 1 0.00
ACGTcount: A:0.37, C:0.13, G:0.18, T:0.32
Consensus pattern (791 bp):
TTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCATGAAAAGAATGGGGAATAGTATGAGT
ATTCAAGTTTATCTTATTTAAGAACAAACTTTGATTCTATCAAAAATGGCAGAAATAAAAGCTTT
TCTTACAACACCAAAGCATCAACGCCATGTATCCTAATGAAGAGAATGTGTTTTTGGATCCCAAT
CTTAAAAAGAATGGAGATTATTAAGAGAATCGAGGCTTATCATATTTAAGGGATAAACTTTGATA
TTAAGTAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAAAAAATTCATGAATATCATTTATCCT
AATGAGAAGAATGTGTTTATAGTGCCTAAACAAAAAATGAATGAAGTTCATTACCAGAATCCAGG
CTTGTCTCAATTGAGGCACAAACTTAGACTTTACAAAAATTGGTGAAAAAAAAGCCTTTCTTGCG
AAACCAAAGCACCAATATCAGGTATCCTAATGAGAAGACTATGTTTAAGGTGCCAAATCATAAAA
AGAATGGGGAATAGTATGAGTATTCAAGTCTGCCTTACTTAAGAGGCAAACTTTGATTCTATCAA
AAACGGCGAAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGCCATGTATCCTAATGAAAG
GAATGTATTTTTGGATCCCAATCTTGAAAAGAATGGAGATTGTTACAGAACATGCTTGTCTTATT
TAAGAGATAAACTTTGATATTAAGTAAAATAGGGTCAAAAAACGATTTCCACGCAAAAGAATATC
ATGAATATCAT
Found at i:39587 original size:159 final size:157
Alignment explanation
Indices: 37118--41008 Score: 984
Period size: 159 Copynumber: 24.6 Consensus size: 157
37108 TCCTGCTCAT
* ** * * **
37118 CCAAAGCACCAATATTGTGTATCCTAATGAGAA-GACTATGTTTACAGTGCCTAATCTTGAAAAG
1 CCAAAGCATCAATATCATGTATCCTAATGA-AAGGAATGTGTTTATGGTGCCTAATCTTGAAAAG
* * * *
37182 AATGGAGAATAGTT--TAAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCTA
65 AATGGAG-ATTGTTACT-AG-AATCATGTTTGTCTTATTTAAGAGGCAAACTTTGATT-TATCAA
* * * *
37245 AAATGGTGGAAATAACAGCTTTTCTTCCGACA
126 AAATGGTGGAAAGAAAAGCTTTTCTTGCGAAA
** ** * *
37277 TGAAAGCAT-AAGCGTCATGTATCCTAATG-AAGAGAATGTGTTTTTGGAT-CCCAATCTTGAAA
1 CCAAAGCATCAA-TATCATGTATCCTAATGAAAG-GAATGTGTTTATGG-TGCCTAATCTTGAAA
* * * * * *
37339 AGAAT-GAGATTCTTACGAGAAATTAGGCTTGTCCTT-TTTAAG-GG-ATGAAATTTGATATTA-
63 AGAATGGAGATTGTTACTAG-AATCATGTTTGT-CTTATTTAAGAGGCA--AACTTTGAT-TTAT
* * * * * *
37399 -AGTAAATAGG-GCAAAGAAAAGATTTCCATG-TAAA
123 CA-AAAAT-GGTGGAAAGAAAAGCTTTTCTTGCGAAA
** * * * * * * **
37433 AAAAATCATTAATATCATTTATCCTAATGAGTA-GAATGTATTTATAGTGCCTAATC-AAAAAAT
1 CCAAAGCATCAATATCATGTATCCTAATGA-AAGGAATGTGTTTATGGTGCCTAATCTTGAAAA-
* * * *
37496 GAAT-GA-ATTTCATTACTAGAATCCAAGTTTGTCTCATTT--GAGGCACGAACTTAGACTTTA-
64 GAATGGAGA-TT-GTTACTAGAAT-CATGTTTGTCTTATTTAAGAGGCA--AACTTTGA-TTTAT
* *
37556 CAAAAATTGGT-GAGAA-AAAAGCCTTTCTTGCGAAT
123 CAAAAA-TGGTGGA-AAGAAAAGCTTTTCTTGCGAAA
* *** * * *
37591 CGAAAGTGCCAATATCATGTATCCTAATGAGAA-GACTATGTTTAAGGTGCCTAATCTTGAAAAG
1 CCAAAGCATCAATATCATGTATCCTAATGA-AAGGAATGTGTTTATGGTGCCTAATCTTGAAAAG
* * * * * *
37655 AATTAGGA-ATAG-TACGAGTATTCAAGTTTGTCTTATTTAAGAGACAAACTTTGATTCTTTCAA
65 AA-T-GGAGATTGTTACTAG-AATCATGTTTGTCTTATTTAAGAGGCAAACTTTGATT-TATCAA
* * **
37718 AAACGGTGAAAAGAAAAGCTTTTCTTGCGATG
126 AAATGGTGGAAAGAAAAGCTTTTCTTGCGAAA
* * * * * * *
37750 CCAAAGCAACAATGTCATCTATCCTAATG-AAGAAAATGTGTTTTTGGAT-CCCAATCTTCAAAA
1 CCAAAGCATCAATATCATGTATCCTAATGAAAG-GAATGTGTTTATGG-TGCCTAATCTTGAAAA
* * * * **
37813 GAATGGAAATTGTTAC-GGAAATCGATGCTTGTTTTATTTAAG-GG-ATGAACTTTGATATTAAG
64 GAATGGAGATTGTTACTAG-AATC-ATGTTTGTCTTATTTAAGAGGCA--AACTTTGAT-TTATC
* * * * ** **
37875 GAAAATAGG-GTAAAGAAAAGATTTCCACGTAAAA
124 AAAAAT-GGTGGAAAGAAAAGCTTTTCTTGCGAAA
** * * * * * ** ** **
37909 GAAAATCATTAATATCTTTTATCCTAATG-AGGAGAACATGTTTACAGTGCCTAATC-CAAAAAT
1 CCAAAGCATCAATATCATGTATCCTAATGAAAG-GAATGTGTTTATGGTGCCTAATCTTGAAAA-
* * * * *
37972 GAATGAAGATCGTTTCTAGAATCTATGTTTGTCTCATTT--GAGGCACGAACTTAGACTTT-TCA
64 GAATGGAGATTGTTACTAGAATC-ATGTTTGTCTTATTTAAGAGGCA--AACTTTGA-TTTATCA
*
38034 AAAATTGGT-GAGAA-AAAAGCCTTTT-TTGCGAAT
125 AAAA-TGGTGGA-AAGAAAAG-CTTTTCTTGCGAAA
* ** *
38067 CCAAAGCA-CAA-AT-ATTGTTATCCTAATGAGAA--AACTATGTTTACAGAGCCTAATCTTGAA
1 CCAAAGCATCAATATCA-TG-TATCCTAATGA-AAGGAA-TGTGTTTATGGTGCCTAATCTTGAA
* * * * **
38127 AAGAATGGGGAATAG-TA-TGAGTATTCATGTTTATCTTATTTAAGAAACAAACTTTGATTCTAT
62 AAGAATGGAG-ATTGTTACT-AG-AATCATGTTTGTCTTATTTAAGAGGCAAACTTTGATT-TAT
** * *
38190 CAAAAATGGCAGAAATAAAAGCTTTTCTT-CCAACA
123 CAAAAATGGTGGAAAGAAAAGCTTTTCTTGCGAA-A
** ** * * * *
38225 TGAAAGCATCAACGTCATGTATCCTAATG-AAGAGAATTTGTTTTTGGAT-CCCAATCTTAAAAA
1 CCAAAGCATCAATATCATGTATCCTAATGAAAG-GAATGTGTTTATGG-TGCCTAATCTTGAAAA
* * * * * * * ***
38288 GAATGGAGATTATTACGAGAATCGAGGCTTATCCTT-TTTATG-GGATAAACTTTGATATTAAGT
64 GAATGGAGATTGTTACTAGAATC-ATGTTTGT-CTTATTTAAGAGG-CAAACTTTGAT-TTATCA
* * * * **
38351 AAAATAGG-GCAAAGAAAAGATTTCCATGTAAAA
125 AAAAT-GGTGGAAAGAAAAGCTTTTCTTGCGAAA
** * * * * * * **
38384 AAAAATTCATTAATATCATTTATCCTAATG-AGGAGAATGTGTTTATAGTGCCTAAAC-AAAAAA
1 CCAAA-GCATCAATATCATGTATCCTAATGAAAG-GAATGTGTTTATGGTGCCTAATCTTGAAAA
* * * * * *
38447 TGAATGAAG-TTCATTACCAGAATCCATGCTTGTCTCATTT--GAGGCACAAACTTAGACTTTA-
64 -GAATGGAGATT-GTTACTAGAAT-CATGTTTGTCTTATTTAAGAGG--CAAACTTTGA-TTTAT
* * *
38508 CAAAAATTGGTGGGAA-AAAAGCCTTTCTTGCGAAT
123 CAAAAA-TGGTGGAAAGAAAAGCTTTTCTTGCGAAA
*** * * * * * *
38543 CCAAAGTGCCAATATCGTGTATCCTAATGAGAA-GACTATGTTTAAGGTGCCTAATCATAAAAAG
1 CCAAAGCATCAATATCATGTATCCTAATGA-AAGGAATGTGTTTATGGTGCCTAATCTTGAAAAG
* * * * *
38607 AATGGGGAATAG-TA-TGAGTATTCAAGTTTGTCTTATTTAAGA-G-AAACTTTGATTCTTTCAA
65 AATGGAG-ATTGTTACT-AG-AATCATGTTTGTCTTATTTAAGAGGCAAACTTTGATT-TATCAA
* * * *
38668 AAACGGCGAAAAGAAAAGCTTTTCTTGCGACA
126 AAATGGTGGAAAGAAAAGCTTTTCTTGCGAAA
** * * * *
38700 CCAAAGCAAT-AATGCCATTTATCCTAATG-AAGAGAATGTATTTTTGGAT-CCCAATCTTGAAA
1 CCAAAGC-ATCAATATCATGTATCCTAATGAAAG-GAATGTGTTTATGG-TGCCTAATCTTGAAA
* * * ***
38762 AGAATGGAGATTGTTAC--GAA--ATGCTTGTCCTT-TTTATG-GGATAAACTTTGATATTAAGT
63 AGAATGGAGATTGTTACTAGAATCATGTTTGT-CTTATTTAAGAGG-CAAACTTTGAT-TTATCA
* * * * *
38821 AAAATAGG-GCAAAG-AAAGATTTCCATG-TAAA
125 AAAAT-GGTGGAAAGAAAAGCTTTTCTTGCGAAA
** * ** * * * *
38852 AGAAACTCATTTATATCATTTATCCTAATG-AGGAGAATGTGTTTATAGTGCCTAATCATGAAAA
1 CCAAA-GCATCAATATCATGTATCCTAATGAAAG-GAATGTGTTTATGGTGCCTAATCTTGAAAA
* * * * * *
38916 GAATGGGGAATAG-TA-TGAGTATTCAAGTTTATCTTATTTAAGA-G-AAACTTTGATTCTTTCA
64 GAATGGAG-ATTGTTACT-AG-AATCATGTTTGTCTTATTTAAGAGGCAAACTTTGATT-TATCA
*
38977 AAAATGGTGG-AAGTAAAAGCTTTTCTTAC-AACA
125 AAAATGGTGGAAAG-AAAAGCTTTTCTTGCGAA-A
** * * * * * *
39010 CCAAA-CGATCAATGCCTTGTATCCTAATGAATGGAATGTGTTTTTGGTTCCCAATCTTGAAAAT
1 CCAAAGC-ATCAATATCATGTATCCTAATGAAAGGAATGTGTTTATGGTGCCTAATCTTGAAAAG
** * *
39074 AATGGAGATTGTTAAGAGAATCGATGTTTGTCATATTTAAG-GG-ATGAACTTTGATTT-TAAGT
65 AATGGAGATTGTTACTAGAATC-ATGTTTGTCTTATTTAAGAGGCA--AACTTTGATTTATCA--
* * * *
39136 AAAATAG-GGCAA-AACA--TTTTCCATGC-AAA
125 AAAATGGTGGAAAGAAAAGCTTTT-CTTGCGAAA
** * * * * * * **
39165 AGAATATCATGAATATCATTTATCGTAATGAGAA-GAATGTGTTTATAGTGCCTAAAC-ACAAAA
1 CCAA-AGCATCAATATCATGTATCCTAATGA-AAGGAATGTGTTTATGGTGCCTAATCTTGAAAA
* * * * * * *
39228 TATATGAAG-TTCATTACTAGAATCCAGGTTTGTCTCAATT--GAGGCACGAACTTAGACTTTA-
64 GA-ATGGAGATT-GTTACTAGAAT-CATGTTTGTCTTATTTAAGAGGCA--AACTTTGA-TTTAT
** *
39289 CAAAAATTGGT-GAAA-AAAAATTCTTTCTTGTGAAA
123 CAAAAA-TGGTGGAAAGAAAAGCT-TTTCTTGCGAAA
* * * * * * *
39324 CCAAAGCACCAATATCAGGTATCCTAATGAGAA-GACTATGTTTAGGGTGCCAAATTTTGAAAAG
1 CCAAAGCATCAATATCATGTATCCTAATGA-AAGGAATGTGTTTATGGTGCCTAATCTTGAAAAG
* * * * * *
39388 AATGGGGAATAG-TA-TGAGTATTCATGTCTGCCTTACTTAAGAGGCAAACTTTGATTCTATCAA
65 AATGGAG-ATTGTTACT-AG-AATCATGTTTGTCTTATTTAAGAGGCAAACTTTGATT-TATCAA
* *
39451 AAATGGTGGAAAGAAAAGCTTTTCTTGTGACA
126 AAATGGTGGAAAGAAAAGCTTTTCTTGCGAAA
* * *
39483 CCAAAGCATCAATGTCATGTATCCTAATGAAAGGAATGTGTTTTTGGT-TCTCAATCTTGAAAAG
1 CCAAAGCATCAATATCATGTATCCTAATGAAAGGAATGTGTTTATGGTGCCT-AATCTTGAAAAG
* *** *
39547 AATGGAGATTGTTACTAGAATCGATGCTTGTCTTATTTAAGAGATGAACTTTGATTT-TTAGTAA
65 AATGGAGATTGTTACTAGAATC-ATGTTTGTCTTATTTAAGAGGCAAACTTTGATTTATCA--AA
* * * * **
39611 AATAGG-GTTAAA-AAACGATTTCCACGC-AAA
127 AAT-GGTG-GAAAGAAAAGCTTTTCTTGCGAAA
** ** * * * * * * * **
39641 AGAATATTATGAATATCATTTATCGTAATG-AGGAGAATGTGTTTGTAGTGCCTAAAC-ACAAAA
1 CCAA-AGCATCAATATCATGTATCCTAATGAAAG-GAATGTGTTTATGGTGCCTAATCTTGAAAA
* * * *
39704 TGAATGAAG-TTCATTACTAGAATCCATGTTTGTCTCATTT--GAGGCATGAACTTAGACTTTA-
64 -GAATGGAGATT-GTTACTAGAAT-CATGTTTGTCTTATTTAAGAGGCA--AACTTTGA-TTTAT
39765 CAAAAATTGGTGG-AA-AAAAGAC-TTTCTTGCGAAA
123 CAAAAA-TGGTGGAAAGAAAAG-CTTTTCTTGCGAAA
* * * * * * *
39799 CCAACA-CACCACTATCGA-GTATCCTAATGAGAA-GACTATGTTGAAGGTGCCAAATCTTGAAA
1 CCAA-AGCATCAATATC-ATGTATCCTAATGA-AAGGAATGTGTTTATGGTGCCTAATCTTGAAA
* * * * * * * *
39861 AGGATGGGGAATAG-TA-TGAGTATTCATGTCTGCCTTATTTAAGAGACAAACTTTGATTCTATA
63 AGAATGGAG-ATTGTTACT-AG-AATCATGTTTGTCTTATTTAAGAGGCAAACTTTGATT-TATC
* * * *
39924 AAAAACGGTAGAAAGAGAAGCTTTTCTTGCGACA
124 AAAAATGGTGGAAAGAAAAGCTTTTCTTGCGAAA
* ** ** *
39958 CCAAAGCATCAATGTCATGTATCCTAATGAATCGAATGTGTTT-TGGTTTCGAATCTTGAAAAGA
1 CCAAAGCATCAATATCATGTATCCTAATGAAAGGAATGTGTTTATGGTGCCTAATCTTGAAAAGA
* * * * * * * * **
40022 ATGGAGATTGTCACAAGAATCGACGCTTGTCTTGTGTAA-AGG-ATGAACTATGATATATGTAAA
66 ATGGAGATTGTTACTAGAATC-ATGTTTGTCTTATTTAAGAGGCA--AACTTTGATTTATCAAAA
** * * * * *
40085 ATATTGGCAAAGAGAAGATTTCCATG-TAAA
128 ATGGTGG-AAAGAAAAGCTTTTCTTGCGAAA
** * * * * * * * ***
40115 AGAAATCATTAATACCAT-TAATCTTATTG-AGGAGAATGTGTTTATAGTGCCTAATCACAAAAA
1 CCAAAGCATCAATATCATGT-ATCCTAATGAAAG-GAATGTGTTTATGGTGCCTAATCTTGAAAA
* * * * * * * * ** * * *
40178 GAATGAAGATCAG-TACTAGAACCCACGTTTGGCTCAATTGAGATACGAACTTGGACTTT-GCAA
64 GAATGGAGAT-TGTTACTAGAA-TCATGTTTGTCTTATTTAAGAGGCAAACTTTGA-TTTATCAA
* **
40241 AAATTGGTGGGAA-AAAAGCCATTCTTGCGAAA
126 AAA-TGGTGGAAAGAAAAGCTTTTCTTGCGAAA
* * * ** *
40273 CCAAAGCA-CAAAAATCATGTATCCTAATGAGAA-GACTATGTTTAAAGTACCTAATCTTGAAAA
1 CCAAAGCATC-AATATCATGTATCCTAATGA-AAGGAATGTGTTTATGGTGCCTAATCTTGAAAA
* **** * * * * * *
40336 GAATGGGGAACAATACGAGTATTCAGGTTTGTCTTATTTAAGAGACAAACGTTGATTCTATAAAA
64 GAATGGAGATTGTTACTAG-AATCATGTTTGTCTTATTTAAGAGGCAAACTTTGATT-TATCAAA
* * * **
40401 AACGGTGGAAAGTAAAGCATTTCTTGCGACG
127 AATGGTGGAAAGAAAAGCTTTTCTTGCGAAA
* * * * * * **
40432 CCAAGGCATCAATGTCTTGTATCCTAATG-AAGAGAATGTGTTTTTGGAT-CCCATTCTTGAATC
1 CCAAAGCATCAATATCATGTATCCTAATGAAAG-GAATGTGTTTATGG-TGCCTAATCTTGAAAA
* * ** *** * ***
40495 GAATGCAGATTGTTA-TGAGAATTGATGCGTGTCTTATTTAAGAGATGAACTATGATATTAAGTA
64 GAATGGAGATTGTTACT-AGAA-TCATGTTTGTCTTATTTAAGAGGCAAACTTTGAT-TTATCAA
* * * * *
40559 AAATAG-GGAAAGAAAAGATTTCCATGCAAAA
126 AAATGGTGGAAAGAAAAGCTTTTCTTGCGAAA
** * * * * * **
40590 GAAAATCATCAACATCAT-TAATCTTATTGAGAA-GAATGTGTTTATAGTGCCTAATC-ACAAAA
1 CCAAAGCATCAATATCATGT-ATCCTAATGA-AAGGAATGTGTTTATGGTGCCTAATCTTGAAAA
* *** * * * * *
40652 TGAATGAAGATCAATACTAGAACCCACGTTTGGCTCATTT--GAGGCATGAACTTAGACTTTAT-
64 -GAATGGAGATTGTTACTAGAA-TCATGTTTGTCTTATTTAAGAGGCA--AACTTTGA-TTTATC
* * *
40714 AAAAATTAGTGG--GGAACAAGTCTTTCCTAT--GAAA
124 AAAAA-TGGTGGAAAGAA-AAG-CTTTTCT-TGCGAAA
* * ** * * *
40748 CCAAAGCATCAATATCTTGTATCCTATTGAGAAGTCTATGT-TTT-TGGTGTCTAAACCTGAAAA
1 CCAAAGCATCAATATCATGTATCCTAATGA-AAG-GAATGTGTTTATGGTGCCTAATCTTGAAAA
* * * * * *
40811 GAAAGGGGATTAG-TA-TGAGTATTCATGTTTGCCTTATTTAAGAGACAAACTTGGATTCTATCA
64 GAATGGAGATT-GTTACT-AG-AATCATGTTTGTCTTATTTAAGAGGCAAACTTTGATT-TATCA
* ** * *
40874 AAAATGATGGAAAGAAAAGCTTACCTTGTGACA
125 AAAATGGTGGAAAGAAAAGCTTTTCTTGCGAAA
* * *
40907 CCAAAGCATCAATGTCATGTATCCTAATG-AAGAGAATGTGTCTT-TGGAT-CCCAATCTTGAGA
1 CCAAAGCATCAATATCATGTATCCTAATGAAAG-GAATGTGT-TTATGG-TGCCTAATCTTGAAA
* *
40969 AGAACGGAGATTGTTA-TGAGAATCGATGCTTGTCTTATTT
63 AGAATGGAGATTGTTACT-AGAATC-ATGTTTGTCTTATTT
41009 TAGAAATGAA
Statistics
Matches: 2650, Mismatches: 791, Indels: 582
0.66 0.20 0.14
Matches are distributed among these distances:
152 20 0.01
153 65 0.02
154 25 0.01
155 43 0.02
156 196 0.07
157 484 0.18
158 772 0.29
159 884 0.33
160 155 0.06
161 6 0.00
ACGTcount: A:0.37, C:0.14, G:0.19, T:0.31
Consensus pattern (157 bp):
CCAAAGCATCAATATCATGTATCCTAATGAAAGGAATGTGTTTATGGTGCCTAATCTTGAAAAGA
ATGGAGATTGTTACTAGAATCATGTTTGTCTTATTTAAGAGGCAAACTTTGATTTATCAAAAATG
GTGGAAAGAAAAGCTTTTCTTGCGAAA
Found at i:39960 original size:475 final size:474
Alignment explanation
Indices: 38872--41067 Score: 2625
Period size: 475 Copynumber: 4.6 Consensus size: 474
38862 TTATATCATT
* * * * *
38872 TATCCTAATGAGGAGAATGTGTTTATA-GTGCCTAATCATGAAAAGAATGGGGAATAGTATGAGT
1 TATCCTAATGAGAAGACTATGTTTA-AGGTGCCAAATCTTGAAAAGAATGGGGAATAGTATGAGT
* ** *
38936 ATTCAAGTTTATCTTATTTAAGAG--AAACTTTGATTCTTTCAAAAATGGTGG-AAGTAAAAGCT
65 ATTCATGTTTGCCTTATTTAAGAGACAAACTTTGATTCTATCAAAAATGGTGGAAAG-AAAAGCT
* * * * *
38998 TTTCTTACAACACCAAA-CGATCAATGCCTTGTATCCTAATGAATGGAATGTGTTTTTGGTTCCC
129 TTTCTTGCGACACCAAAGC-ATCAATGTCATGTATCCTAATGAAAGGAATGTGTTTTTGGTTCCC
* * * * *
39062 AATCTTGAAAATAATGGAGATTGTTAAGAGAATCGATGTTTGTCATATTTAAGGGATGAACTTTG
193 AATCTTGAAAAGAATGGAGATTGTT-ATAGAATCGATGCTTGTCTTATTTAAGAGATGAACTTTG
* *
39127 ATTTTAAGTAAAATAGGG-CA-AAAC-ATTTTCCATGCAAAAGAATATCATGAATATCATTTATC
257 ATTTTAAGTAAAATAGGGAAAGAAACGA-TTTCCATGCAAAAGAATATCATGAATATCATTAATC
* *
39189 GTAATGAGAAGAATGTGTTTATAGTGCCTAAACACAAAAT-ATATGAAGTTCATTACTAGAATCC
321 GTAATGAGAAGAATGTGTTTATAGTGCCTAAACACAAAATGA-ATGAAGATCATTACTAGAACCC
* * ** **
39253 AGGTTTGTCTCAATTGAGGCACGAACTTAGACTTTACAAAAATTGGTGAAAAAAAATTCTTTCTT
385 ACGTTTGGCTCAATTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAAAAAGACTTTCTT
*
39318 GTGAAACCAAAGCACCAATATCAGG
450 GCGAAACCAAAGCACCAATATCAGG
* *
39343 TATCCTAATGAGAAGACTATGTTTAGGGTGCCAAATTTTGAAAAGAATGGGGAATAGTATGAGTA
1 TATCCTAATGAGAAGACTATGTTTAAGGTGCCAAATCTTGAAAAGAATGGGGAATAGTATGAGTA
* * *
39408 TTCATGTCTGCCTTACTTAAGAGGCAAACTTTGATTCTATCAAAAATGGTGGAAAGAAAAGCTTT
66 TTCATGTTTGCCTTATTTAAGAGACAAACTTTGATTCTATCAAAAATGGTGGAAAGAAAAGCTTT
* *
39473 TCTTGTGACACCAAAGCATCAATGTCATGTATCCTAATGAAAGGAATGTGTTTTTGGTTCTCAAT
131 TCTTGCGACACCAAAGCATCAATGTCATGTATCCTAATGAAAGGAATGTGTTTTTGGTTCCCAAT
39538 CTTGAAAAGAATGGAGATTGTTACTAGAATCGATGCTTGTCTTATTTAAGAGATGAACTTTGATT
196 CTTGAAAAGAATGGAGATTGTTA-TAGAATCGATGCTTGTCTTATTTAAGAGATGAACTTTGATT
* * * *
39603 TTTAGTAAAATAGGGTTAAA-AAACGATTTCCACGCAAAAGAATATTATGAATATCATTTATCGT
260 TTAAGTAAAATAGGG--AAAGAAACGATTTCCATGCAAAAGAATATCATGAATATCATTAATCGT
* * * * *
39667 AATGAGGAGAATGTGTTTGTAGTGCCTAAACACAAAATGAATGAAGTTCATTACTAGAATCCATG
323 AATGAGAAGAATGTGTTTATAGTGCCTAAACACAAAATGAATGAAGATCATTACTAGAACCCACG
* * *
39732 TTTGTCTCATTTGAGGCATGAACTTAGACTTTACAAAAATTGGT-GGAAAAAAGACTTTCTTGCG
388 TTTGGCTCAATTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAAAAAGACTTTCTTGCG
*
39796 AAACCAACA-CACCACTATC-GAG
453 AAACCAA-AGCACCAATATCAG-G
* *
39818 TATCCTAATGAGAAGACTATGTTGAAGGTGCCAAATCTTGAAAAGGATGGGGAATAGTATGAGTA
1 TATCCTAATGAGAAGACTATGTTTAAGGTGCCAAATCTTGAAAAGAATGGGGAATAGTATGAGTA
* * * * *
39883 TTCATGTCTGCCTTATTTAAGAGACAAACTTTGATTCTATAAAAAACGGTAGAAAGAGAAGCTTT
66 TTCATGTTTGCCTTATTTAAGAGACAAACTTTGATTCTATCAAAAATGGTGGAAAGAAAAGCTTT
** * *
39948 TCTTGCGACACCAAAGCATCAATGTCATGTATCCTAATGAATCGAATGTG-TTTTGGTTTCGAAT
131 TCTTGCGACACCAAAGCATCAATGTCATGTATCCTAATGAAAGGAATGTGTTTTTGGTTCCCAAT
* * * * * *
40012 CTTGAAAAGAATGGAGATTGTCACAAGAATCGACGCTTGTCTTGTGTAA-AGGATGAACTATGA-
196 CTTGAAAAGAATGGAGATTGTTA-TAGAATCGATGCTTGTCTTATTTAAGA-GATGAACTTTGAT
* * * * * *
40075 TATATGTAAAATATTGGCAAAGAGAA-GATTTCCATGTAAAAGAA-ATCATTAATACCATTAATC
259 TTTAAGTAAAATA--GGGAAAGA-AACGATTTCCATGCAAAAGAATATCATGAATATCATTAATC
* * * * * *
40138 TTATTGAGGAGAATGTGTTTATAGTGCCTAATCACAAAAAGAATGAAGATCAGTACTAGAACCCA
321 GTAATGAGAAGAATGTGTTTATAGTGCCTAAACACAAAATGAATGAAGATCATTACTAGAACCCA
** * * * *
40203 CGTTTGGCTCAATTGAGATACGAACTTGGACTTTGCAAAAATTGGTGGGAAAAAAGCCATTCTTG
386 CGTTTGGCTCAATTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAAAAAGACTTTCTTG
* * *
40268 CGAAACCAAAGCACAAAAATCATG
451 CGAAACCAAAGCACCAATATCAGG
* * * * * *
40292 TATCCTAATGAGAAGACTATGTTTAAAGTACCTAATCTTGAAAAGAATGGGGAACAATACGAGTA
1 TATCCTAATGAGAAGACTATGTTTAAGGTGCCAAATCTTGAAAAGAATGGGGAATAGTATGAGTA
* * * * * * *
40357 TTCAGGTTTGTCTTATTTAAGAGACAAACGTTGATTCTATAAAAAACGGTGGAAAGTAAAGCATT
66 TTCATGTTTGCCTTATTTAAGAGACAAACTTTGATTCTATCAAAAATGGTGGAAAGAAAAGCTTT
* * * * *
40422 TCTTGCGACGCCAAGGCATCAATGTCTTGTATCCTAATG-AAGAGAATGTGTTTTTGGATCCCAT
131 TCTTGCGACACCAAAGCATCAATGTCATGTATCCTAATGAAAG-GAATGTGTTTTTGGTTCCCAA
** * * * *
40486 TCTTGAATCGAATGCAGATTGTTATGAGAATTGATGCGTGTCTTATTTAAGAGATGAACTATGAT
195 TCTTGAAAAGAATGGAGATTGTTAT-AGAATCGATGCTTGTCTTATTTAAGAGATGAACTTTGAT
* * * * * *
40551 ATTAAGTAAAATAGGGAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAACATCATTAATCTTA
259 TTTAAGTAAAATAGGGAAAGAAACGATTTCCATGCAAAAGAATATCATGAATATCATTAATCGTA
* * *
40616 TTGAGAAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCAATACTAGAACCCACGT
324 ATGAGAAGAATGTGTTTATAGTGCCTAAACACAAAATGAATGAAGATCATTACTAGAACCCACGT
* * * * * * * * **
40681 TTGGCTCATTTGAGGCATGAACTTAGACTTTATAAAAATTAGTGGGGAACAAGTCTTTCCTATGA
389 TTGGCTCAATTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAAAAAGACTTTCTTGCGA
* **
40746 AACCAAAGCATCAATATCTTG
454 AACCAAAGCACCAATATCAGG
* * ** * * * *
40767 TATCCTATTGAGAAGTCTATGTTTTTGGTGTCTAAA-CCTGAAAAGAAAGGGGATTAGTATGAGT
1 TATCCTAATGAGAAGACTATGTTTAAGGTG-CCAAATCTTGAAAAGAATGGGGAATAGTATGAGT
* *
40831 ATTCATGTTTGCCTTATTTAAGAGACAAACTTGGATTCTATCAAAAATGATGGAAAGAAAAGCTT
65 ATTCATGTTTGCCTTATTTAAGAGACAAACTTTGATTCTATCAAAAATGGTGGAAAGAAAAGCTT
** * * *
40896 ACCTTGTGACACCAAAGCATCAATGTCATGTATCCTAATG-AAGAGAATGTGTCTTTGGATCCCA
130 TTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAATGAAAG-GAATGTGTTTTTGGTTCCCA
* * * *
40960 ATCTTGAGAAGAACGGAGATTGTTATGAGAATCGATGCTTGTCTTATTTTAGAAATGAACTTTGA
194 ATCTTGAAAAGAATGGAGATTGTTAT-AGAATCGATGCTTGTCTTATTTAAGAGATGAACTTTGA
* * * * *
41025 TTTTACGGAAAATACGGCAAAGAAAAGATTTTCATGCAAAAGA
258 TTTTAAGTAAAATA-GGGAAAGAAACGATTTCCATGCAAAAGA
41068 CAGTCATCAA
Statistics
Matches: 1490, Mismatches: 205, Indels: 55
0.85 0.12 0.03
Matches are distributed among these distances:
471 75 0.05
472 1 0.00
473 291 0.20
474 302 0.20
475 635 0.43
476 184 0.12
477 2 0.00
ACGTcount: A:0.36, C:0.13, G:0.20, T:0.31
Consensus pattern (474 bp):
TATCCTAATGAGAAGACTATGTTTAAGGTGCCAAATCTTGAAAAGAATGGGGAATAGTATGAGTA
TTCATGTTTGCCTTATTTAAGAGACAAACTTTGATTCTATCAAAAATGGTGGAAAGAAAAGCTTT
TCTTGCGACACCAAAGCATCAATGTCATGTATCCTAATGAAAGGAATGTGTTTTTGGTTCCCAAT
CTTGAAAAGAATGGAGATTGTTATAGAATCGATGCTTGTCTTATTTAAGAGATGAACTTTGATTT
TAAGTAAAATAGGGAAAGAAACGATTTCCATGCAAAAGAATATCATGAATATCATTAATCGTAAT
GAGAAGAATGTGTTTATAGTGCCTAAACACAAAATGAATGAAGATCATTACTAGAACCCACGTTT
GGCTCAATTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAAAAAGACTTTCTTGCGAAA
CCAAAGCACCAATATCAGG
Found at i:40247 original size:949 final size:945
Alignment explanation
Indices: 38872--41067 Score: 2685
Period size: 949 Copynumber: 2.3 Consensus size: 945
38862 TTATATCATT
* * * *
38872 TATCCTAATGAGGAGAATGTGTTTATA-GTGCCTAATCATGAAAAGAATGGGGAATAGTATGAGT
1 TATCCTAATGAGAAGACTATGTTTA-AGGTGCCAAATCATGAAAAGAATGGGGAATAGTATGAGT
* ** * *
38936 ATTCAAGTTTATCTTATTTAAGAG--AAACTTTGATTCTTTCAAAAATGGTGGAAGTAAAAGCTT
65 ATTCATGTTTGCCTTATTTAAGAGACAAACTTTGATTCTATCAAAAATGGTGAAAG-AAAAGCTT
* * * * *
38999 TTCTTACAACACCAAA-CGATCAATGCCTTGTATCCTAATGAATGGAATGTGTTTTTGGTTCCCA
129 TTCTTGCGACACCAAAGC-ATCAATGTCATGTATCCTAATGAATAGAATGTG-TTTTGGTTCCCA
* * * * * *
39063 ATCTTGAAAATAATGGAGATTGTTAAGAGAATCGATGTTTGTCATATTTAAGGGATGAACTTTGA
192 ATCTTGAAAAGAATGGAGATTGTTAA-AGAATCGATGCTTGTCTTATGTAAAGGATGAACTATGA
* * * * *
39128 TTTTAAGTAAAATAGGGCAAAACATTTTCCATGCAAAAGAATATCATGAATATCATTTATCGTAA
256 TTATAAGTAAAATAGGGCAAAAAAATTTCCATGCAAAAGAATATCATGAATACCATTAATCGTAA
* * * * *
39193 TGAGAAGAATGTGTTTATAGTGCCTAAACACAAAATATATGAAGTTCATTACTAGAATCCAGGTT
321 TGAGAAGAATGTGTTTATAGTGCCTAAACACAAAATAAATGAAGATCAGTACTAGAACCCACGTT
* * ** * *
39258 TGTCTCAATTGAGGCACGAACTTAGACTTTACAAAAATTGGTGAAAAAAAATTCTTTCTTGTGAA
386 TGGCTCAATTGAGACACGAACTTAGACTTTACAAAAATTGGTGAAAAAAAAGCCATTCTTGCGAA
* * ** * *
39323 ACCAAAGCACCAATATCAGGTATCCTAATGAGAAGACTATGTTTAGGGTGCCAAATTTTGAAAAG
451 ACCAAAGCACAAAAATCAGGTATCCTAATGAGAAGACTATGTTTAAAGTACCAAATCTTGAAAAG
* * * * * * *
39388 AATGGGGAATAGTATGAGTATTCATGTCTGCCTTACTTAAGAGGCAAACTTTGATTCTATCAAAA
516 AATGGGGAACAATACGAGTATTCAGGTCTGCCTTACTTAAGAGACAAACGTTGATTCTATAAAAA
* * *
39453 ATGGTGGAAAGAAAAGCTTTTCTTGTGACACCAAAGCATCAATGTCATGTATCCTAATGAA-AGG
581 ACGGTGGAAAGAAAAGCATTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAATGAAGA-G
* * * *
39517 AATGTGTTTTTGGTTCTCAATCTTGAAAAGAATGGAGATTGTTACT-AGAATCGATGCTTGTCTT
645 AATGTGTTTTTGGATCCCAATCTTGAAAAGAATGCAGATTGTTA-TGAGAATCGATGCGTGTCTT
* * * *
39581 ATTTAAGAGATGAACTTTGATTTTTAGTAAAATAGGGTTAAA-AAACGATTTCCACGCAAAAGAA
709 ATTTAAGAGATGAACTATGATATTAAGTAAAATAGGG--AAAGAAAAGATTTCCACGCAAAAGAA
* * * * * * *
39645 TATTATGAATATCATTTATCGTAATGAGGAGAATGTGTTTGTAGTGCCTAAACACAAAATGAATG
772 AATCATCAACATCATTAATCGTAATGAGAAGAATGTGTTTATAGTGCCTAAACACAAAATGAATG
* * * * * *
39710 AAGTTCATTACTAGAATCCATGTTTGTCTCATTTGAGGCATGAACTTAGACTTTACAAAAATTGG
837 AAGATCAATACTAGAACCCACGTTTGGCTCATTTGAGGCATGAACTTAGACTTTACAAAAATTAG
* * *
39775 T-GGAAAAAAGACTTTCTTGCGAAACCAACA-CACCACTATCGAG
902 TGGGAAAAAAGACTTTCCTACGAAACCAA-AGCACCAATATCGAG
* * *
39818 TATCCTAATGAGAAGACTATGTTGAAGGTGCCAAATCTTGAAAAGGATGGGGAATAGTATGAGTA
1 TATCCTAATGAGAAGACTATGTTTAAGGTGCCAAATCATGAAAAGAATGGGGAATAGTATGAGTA
* * * *
39883 TTCATGTCTGCCTTATTTAAGAGACAAACTTTGATTCTATAAAAAACGGTAGAAAGAGAAGCTTT
66 TTCATGTTTGCCTTATTTAAGAGACAAACTTTGATTCTATCAAAAATGGT-GAAAGAAAAGCTTT
* * *
39948 TCTTGCGACACCAAAGCATCAATGTCATGTATCCTAATGAATCGAATGTGTTTTGGTTTCGAATC
130 TCTTGCGACACCAAAGCATCAATGTCATGTATCCTAATGAATAGAATGTGTTTTGGTTCCCAATC
* * *
40013 TTGAAAAGAATGGAGATTGTCACAAGAATCGACGCTTGTCTTGTGTAAAGGATGAACTATGA-TA
195 TTGAAAAGAATGGAGATTGTTA-AAGAATCGATGCTTGTCTTATGTAAAGGATGAACTATGATTA
* * * * *
40077 TATGTAAAATATTGGCAAAGAGAAGATTTCCATGTAAAAGAA-ATCATTAATACCATTAATCTTA
259 TAAGTAAAATA-GGGCAAA-A-AA-ATTTCCATGCAAAAGAATATCATGAATACCATTAATCGTA
* * *
40141 TTGAGGAGAATGTGTTTATAGTGCCTAATCACAAAA-AGAATGAAGATCAGTACTAGAACCCACG
320 ATGAGAAGAATGTGTTTATAGTGCCTAAACACAAAATA-AATGAAGATCAGTACTAGAACCCACG
* * * **
40205 TTTGGCTCAATTGAGATACGAACTTGGACTTTGCAAAAATTGGTGGGAAAAAAGCCATTCTTGCG
384 TTTGGCTCAATTGAGACACGAACTTAGACTTTACAAAAATTGGTGAAAAAAAAGCCATTCTTGCG
* *
40270 AAACCAAAGCACAAAAATCATGTATCCTAATGAGAAGACTATGTTTAAAGTACCTAATCTTGAAA
449 AAACCAAAGCACAAAAATCAGGTATCCTAATGAGAAGACTATGTTTAAAGTACCAAATCTTGAAA
* * *
40335 AGAATGGGGAACAATACGAGTATTCAGGTTTGTCTTATTTAAGAGACAAACGTTGATTCTATAAA
514 AGAATGGGGAACAATACGAGTATTCAGGTCTGCCTTACTTAAGAGACAAACGTTGATTCTATAAA
* * * *
40400 AAACGGTGGAAAGTAAAGCATTTCTTGCGACGCCAAGGCATCAATGTCTTGTATCCTAATGAAGA
579 AAACGGTGGAAAGAAAAGCATTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAATGAAGA
* ** *
40465 GAATGTGTTTTTGGATCCCATTCTTGAATCGAATGCAGATTGTTATGAGAATTGATGCGTGTCTT
644 GAATGTGTTTTTGGATCCCAATCTTGAAAAGAATGCAGATTGTTATGAGAATCGATGCGTGTCTT
*
40530 ATTTAAGAGATGAACTATGATATTAAGTAAAATAGGGAAAGAAAAGATTTCCATGCAAAAGAAAA
709 ATTTAAGAGATGAACTATGATATTAAGTAAAATAGGGAAAGAAAAGATTTCCACGCAAAAGAAAA
* * *
40595 TCATCAACATCATTAATCTTATTGAGAAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAA
774 TCATCAACATCATTAATCGTAATGAGAAGAATGTGTTTATAGTGCCTAAACACAAAATGAATGAA
*
40660 GATCAATACTAGAACCCACGTTTGGCTCATTTGAGGCATGAACTTAGACTTTATAAAAATTAGTG
839 GATCAATACTAGAACCCACGTTTGGCTCATTTGAGGCATGAACTTAGACTTTACAAAAATTAGTG
* * * * * **
40725 GGGAACAAGTCTTTCCTATGAAACCAAAGCATCAATATCTTG
904 GGAAAAAAGACTTTCCTACGAAACCAAAGCACCAATATCGAG
* * ** * * * *
40767 TATCCTATTGAGAAGTCTATGTTTTTGGTGTCTAAA-CCTGAAAAGAAAGGGGATTAGTATGAGT
1 TATCCTAATGAGAAGACTATGTTTAAGGTG-CCAAATCATGAAAAGAATGGGGAATAGTATGAGT
* *
40831 ATTCATGTTTGCCTTATTTAAGAGACAAACTTGGATTCTATCAAAAATGATGGAAAGAAAAGCTT
65 ATTCATGTTTGCCTTATTTAAGAGACAAACTTTGATTCTATCAAAAATGGT-GAAAGAAAAGCTT
** * * *
40896 ACCTTGTGACACCAAAGCATCAATGTCATGTATCCTAATGAAGAGAATGTGTCTTTGGATCCCAA
129 TTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAATGAATAGAATGTGT-TTTGGTTCCCAA
* * * * *
40961 TCTTGAGAAGAACGGAGATTGTTATGAGAATCGATGCTTGTCTTATTTTAGAA--ATGAACTTTG
193 TCTTGAAAAGAATGGAGATTGTTA-AAGAATCGATGCTTGTCTTA-TGTA-AAGGATGAACTATG
* * * * *
41024 ATTTTACGGAAAATACGGCAAAGAAAAGATTTTCATGCAAAAGA
255 ATTATAAGTAAAATAGGGC-AA-AAAA-ATTTCCATGCAAAAGA
41068 CAGTCATCAA
Statistics
Matches: 1061, Mismatches: 166, Indels: 42
0.84 0.13 0.03
Matches are distributed among these distances:
945 1 0.00
946 86 0.08
947 73 0.07
948 212 0.20
949 573 0.54
950 97 0.09
951 16 0.02
952 3 0.00
ACGTcount: A:0.36, C:0.13, G:0.20, T:0.31
Consensus pattern (945 bp):
TATCCTAATGAGAAGACTATGTTTAAGGTGCCAAATCATGAAAAGAATGGGGAATAGTATGAGTA
TTCATGTTTGCCTTATTTAAGAGACAAACTTTGATTCTATCAAAAATGGTGAAAGAAAAGCTTTT
CTTGCGACACCAAAGCATCAATGTCATGTATCCTAATGAATAGAATGTGTTTTGGTTCCCAATCT
TGAAAAGAATGGAGATTGTTAAAGAATCGATGCTTGTCTTATGTAAAGGATGAACTATGATTATA
AGTAAAATAGGGCAAAAAAATTTCCATGCAAAAGAATATCATGAATACCATTAATCGTAATGAGA
AGAATGTGTTTATAGTGCCTAAACACAAAATAAATGAAGATCAGTACTAGAACCCACGTTTGGCT
CAATTGAGACACGAACTTAGACTTTACAAAAATTGGTGAAAAAAAAGCCATTCTTGCGAAACCAA
AGCACAAAAATCAGGTATCCTAATGAGAAGACTATGTTTAAAGTACCAAATCTTGAAAAGAATGG
GGAACAATACGAGTATTCAGGTCTGCCTTACTTAAGAGACAAACGTTGATTCTATAAAAAACGGT
GGAAAGAAAAGCATTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAATGAAGAGAATGTG
TTTTTGGATCCCAATCTTGAAAAGAATGCAGATTGTTATGAGAATCGATGCGTGTCTTATTTAAG
AGATGAACTATGATATTAAGTAAAATAGGGAAAGAAAAGATTTCCACGCAAAAGAAAATCATCAA
CATCATTAATCGTAATGAGAAGAATGTGTTTATAGTGCCTAAACACAAAATGAATGAAGATCAAT
ACTAGAACCCACGTTTGGCTCATTTGAGGCATGAACTTAGACTTTACAAAAATTAGTGGGAAAAA
AGACTTTCCTACGAAACCAAAGCACCAATATCGAG
Found at i:42682 original size:475 final size:474
Alignment explanation
Indices: 41792--45073 Score: 3903
Period size: 475 Copynumber: 6.9 Consensus size: 474
41782 CATCAGATCT
* *
41792 TAATGAGGAGAATG-GTTTTATAGTGCCTAATCACAAAATGAATGAAGATCAATT-CTAGAACCC
1 TAATGAGGAGAATGTG-TTTATAGTGCCTAATCACAAAATGAATGAAGTTC-ATTACTAGAATCC
* * * *
41855 ATGTTTGGCTCATTTGAGGCACGAAGTTAGACTTTACAAAAATTGGTGGGAAGAAAGCCTTTCTT
64 ATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGAAAAAAAGCCTTTCTT
* ** *
41920 GCGAAACCAAAGCACCAACGTCGTGTATCCTAATGAGAAGACTATGTTTAAGGTGCCATATCTTG
129 GTGAAACCAAAGCACCAATATCGTGTATCCTAATGAGAAGACTATGTTTAAGGTGCCAAATCTTG
* * *
41985 AAAAGAAT-GGGAATAGTATAAGTATTCATGTTTACCTTATTTAAGAGACAAACTTTGATTCTAT
194 AAAAGAATGGGGAATAGTATGAGTATTCATGTCTGCCTTATTTAAGAGACAAACTTTGATTCTAT
* * * * ** **
42049 CAAAAATGGTGGAAGTAAAAGCTTTCCTTGCGACTCCAAAGGATCAATACCACATATCCTAATGA
259 CAAAAACGGTGGAAGTAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAATGA
* * * **
42114 ATGGAATGTGTTTTTGGTTCCCAATCTTGAAAATATTAGAGATTGCTAAGAGAATCGATGCTTGT
324 ATGGAATGTGTTTTTGGTTCCCAATCTTGAAAATAATGGAGATTGTTACTAGAATCGATGCTTGT
* *
42179 CATATTTAAGAGG-TGAACTTTGATTTTAAGTAAAATAGGGTAAAGAAACATTTTCCATGCAAAA
389 CTTATTTAAG-GGATGAACTTTGATTTTAAGTAAAATAGGGCAAAGAAA-A-TTTCCATGCAAAA
* * *
42243 GAATATCATGAATATCGTTTATCA
451 GAATATCATCAATATCATTTATCG
* * * *
42267 TAATGAGGAGAATGTGTTTATAGTGCCTAAACACAAAATAAATGAAGTTCGTTACTAGAATCCAG
1 TAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGTTCATTACTAGAATCCAT
* * * *
42332 GTTTGTCTCATTCGAGGCACGAACTTAGACTTTAGAAAAATTAGTGGAAAAAAAGTCTTTCTTGT
66 GTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGAAAAAAAGCCTTTCTTGT
** * * * *
42397 GAAACCAAAGTGCCGATATCGGGTATCCTAATGAGAATACTATGTTTAGGGTGCCAAATCTTGAA
131 GAAACCAAAGCACCAATATCGTGTATCCTAATGAGAAGACTATGTTTAAGGTGCCAAATCTTGAA
* * *
42462 AAGAATGGGGAATAGTTTGAGCATTCATGTCTGCCTTATTTAAGAGACAAACTTTAATTCTATCA
196 AAGAATGGGGAATAGTATGAGTATTCATGTCTGCCTTATTTAAGAGACAAACTTTGATTCTATCA
* * *
42527 AAAACGGTGGAAAG-AAAAGCTTTTCTTGCGACACCAAAGCACCAAGGCCATGTATCCTAATGAA
261 AAAACGGTGG-AAGTAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAATGAA
* * *
42591 AGGAATGTG-TTTTGGTTCCCAATCTTGAAAAGAACGGAGATTGTTACTAGAATCGATGCTTGTC
325 TGGAATGTGTTTTTGGTTCCCAATCTTGAAAATAATGGAGATTGTTACTAGAATCGATGCTTGTC
* * *
42655 TTATTTAAGGGATGAGCTTTGATTTTAAGTAAAATAGGGCGAAGAAATGATTTCCACGCAAAAGA
390 TTATTTAAGGGATGAACTTTGATTTTAAGTAAAATAGGGCAAAGAAA--ATTTCCATGCAAAAGA
* **
42720 ATATCA-CAAATTTTGTTTA-CTG
453 ATATCATC-AATATCATTTATC-G
* * * *
42742 TAATGCA-GAGAATGTGTTTGTAGTGCCTAAACACAAATTGAATGACGTTCATTACTAGAATCCA
1 TAATG-AGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGTTCATTACTAGAATCCA
* * *
42806 TGTTTATCTCATTTGAGGCATGAACTTAAACTTTACAAAAATTGGTGG-AAAAAAGCCTTT-TCT
65 TGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGAAAAAAAGCCTTTCT-T
* * * *
42869 GTGAAACCAATGCACCAATATCGAGTATCCTAATGAGAAGACTATGTTTAAAGTGCCAAATCATG
129 GTGAAACCAAAGCACCAATATCGTGTATCCTAATGAGAAGACTATGTTTAAGGTGCCAAATCTTG
*
42934 AAAAGAATGGGGAATAGTATGAGTATACATGTCTGCCTTATTTAAGAGACAAACTTTGATTCTAT
194 AAAAGAATGGGGAATAGTATGAGTATTCATGTCTGCCTTATTTAAGAGACAAACTTTGATTCTAT
* * *
42999 AAAAAACGATGGAAAG-AAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCTTGTATCCTAATG
259 CAAAAACGGTGG-AAGTAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAATG
* * *** **
43063 AA-GAGAATGTGTTTTTGGATCCCAACCTTGAATCGAATGGAGATTGTTAGGAGAATCGATGCTT
323 AATG-GAATGTGTTTTTGGTTCCCAATCTTGAAAATAATGGAGATTGTTACTAGAATCGATGCTT
* * *
43127 GTCTTATTTGAGGGATGAACTATGATATTAAGTAAAATAGGGCAAAGAAAAGATTTCCATGCAAA
387 GTCTTATTTAAGGGATGAACTTTGATTTTAAGTAAAATAGGGCAAAG-AAA-ATTTCCATGCAAA
* * * *
43192 AGAAAATTATCAATATCATTAATCT
450 AGAATATCATCAATATCATTTATCG
* * * * *
43217 TATTAAGGAGAATGTGTTTATAGTGCCTAATTACAAAATGAATGAAGATT-AGTACTAGAACCCA
1 TAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAG-TTCATTACTAGAATCCA
* * * * * * * *
43281 CGTTTGGCTCATTTGAAGCATGAACTTAGACTTTACAAAAATTAGT-GAGGAACAAGCCTTTCCT
65 TGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGA-AAAAAAGCCTTTCTT
* * * * ** * * *
43345 GTGAAACCAGAGCATCAATATCTTGTA-CCTTATTGAGAAGACTATGTTTTTGGTGTCGAATCCT
129 GTGAAACCAAAGCACCAATATCGTGTATCC-TAATGAGAAGACTATGTTTAAGGTGCCAAATCTT
* * * *
43409 GAAAAGAA-AGGGAATTAGTATGAGTATTGATGTTTGCCTTATTTAAGAGACAAACTTTGATTCA
193 GAAAAGAATGGGGAA-TAGTATGAGTATTCATGTCTGCCTTATTTAAGAGACAAACTTTGATTCT
** **
43473 AT-GTATTC--T---AGTAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTGTATCCTA
257 ATCAAAAACGGTGGAAGTAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCA--TGTATCCTA
* * *
43532 ATGAATGGAATTTGTTTTTAGTTCCCAAT-TTGAAAATAATGGAGATTGTTACTAGAATTGATGC
320 ATGAATGGAATGTGTTTTTGGTTCCCAATCTTGAAAATAATGGAGATTGTTACTAGAATCGATGC
* * *
43596 TTGTCTTATTTAAAGGGATGAGCTTTGATTTTAAGTAATATAGGGCAAAGAAATGATTTCCACGC
385 TTGTCTTATTT-AAGGGATGAACTTTGATTTTAAGTAAAATAGGGCAAAGAAA--ATTTCCATGC
* **
43661 AAAAGAATATCA-CAAATTTTGTTTA-CTG
447 AAAAGAATATCATC-AATATCATTTATC-G
* * *
43689 TAATGCA-GAGAATGTGTTTGTAGTGCCTAAACACAAATTGAATGAAGTTCATTACTAGAATCCA
1 TAATG-AGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGTTCATTACTAGAATCCA
* *
43753 TGTTTGTCTCATTTGAGGCATGAACTTAAACTTTACAAAAATTGGTGGAAAAAAAGCCTTT-TCT
65 TGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGAAAAAAAGCCTTTCT-T
* * *
43817 GTGAAACCAATGCACCAATATCGAGTATCCTAATGAGAAGACTATGTTTAAGGTGCTAAATCTTG
129 GTGAAACCAAAGCACCAATATCGTGTATCCTAATGAGAAGACTATGTTTAAGGTGCCAAATCTTG
* * *
43882 AAAAGAATGGGGAATAGTATGGGTATTCATGTCTACCTTATTTACGAGACAAACTTTGATTCTAT
194 AAAAGAATGGGGAATAGTATGAGTATTCATGTCTGCCTTATTTAAGAGACAAACTTTGATTCTAT
* * * * *
43947 CAAAAAAGGTGGAAGTAAAAGCTTTTCTTGCGACACCAAAGCTTCAATATCAAGTAACCTAATGA
259 CAAAAACGGTGGAAGTAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAATGA
* * * *
44012 ATGGATTGTGTTTTTGCTTCCCAATCTTGAAAATAATGGTGATTGTTACTAGAATCGATGCTTAT
324 ATGGAATGTGTTTTTGGTTCCCAATCTTGAAAATAATGGAGATTGTTACTAGAATCGATGCTTGT
* * *
44077 CTTATTTAAGGGATGAACTTTGATATTATGTAAAATAGGGCAAAGAAAAGATTTCCGTGCAAAAG
389 CTTATTTAAGGGATGAACTTTGATTTTAAGTAAAATAGGGCAAAG-AAA-ATTTCCATGCAAAAG
* *
44142 AA-ATCATCAATATCATTAATCT
452 AATATCATCAATATCATTTATCG
* * *
44164 TGATGAGGAGAATGTGTTTATAGTGCCTAATCA-AAAATGAATGAAG-TCAATACTAGAACCCAT
1 TAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGTTCATTACTAGAATCCAT
* * * * * * * *
44227 GTTTGGCTCATTTGAGGTACAAACTTAGACTTTACAAAAATTGCTGGGAAAAAGGCTTTTCTTGC
66 GTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGAAAAAAAGCCTTTCTTGT
* ** ** * * * * * *
44292 GAAAGCAAAGCTGCAATATCGTGTATCCTTTTGAGAAGACTATGCTTATGGTGTCTAATCCTAAA
131 GAAACCAAAGCACCAATATCGTGTATCCTAATGAGAAGACTATGTTTAAGGTGCCAAATCTTGAA
** * * * * *
44357 AAGAAAAGGGATTAGTATGAGTGTTCATGTTTACCTTATTTAAGAGACAAGCTTTGATTCTATCA
196 AAGAATGGGGAATAGTATGAGTATTCATGTCTGCCTTATTTAAGAGACAAACTTTGATTCTATCA
* * *
44422 AAAATGGTGGAAGCAAAAGCTTTTC-T-----AGC---G-A--AATGTCATGTATCCTAATGAAT
261 AAAACGGTGGAAGTAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAATGAAT
*
44475 CGAATGTGTTTTTGGTTCCCAATCTTGAAAATAATGGAGATTGTTACTAGAATCGATGCTTGTC-
326 GGAATGTGTTTTTGGTTCCCAATCTTGAAAATAATGGAGATTGTTACTAGAATCGATGCTTGTCT
* * ** * *
44539 TATTTAGGGGATGAACTTTGATTTTAAGTAAACTTCGACAAAGAAACGATTTCCAAGCAAAAGAA
391 TATTTAAGGGATGAACTTTGATTTTAAGTAAAATAGGGCAAAGAAA--ATTTCCATGCAAAAGAA
* *
44604 TATCATCAATGTCATTTATCC
454 TATCATCAATATCATTTATCG
44625 TAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAG-TCATTACTAGAATCCAT
1 TAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGTTCATTACTAGAATCCAT
* * * * * *
44689 GTTTATCTCATTTGAGGCACGAACTTAGACTTTACAGAAATTGGTGGTAAAAAAGCTTTTCCTGG
66 GTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGAAAAAAAGCCTTTCTTGT
44754 GAAACCAAAGCACCAATATCAG-GTATCCTAATGAGAAGACTATGTTTAAGGTGCCAAATCTTGA
131 GAAACCAAAGCACCAATATC-GTGTATCCTAATGAGAAGACTATGTTTAAGGTGCCAAATCTTGA
* *
44818 AAAGAAT-GGGAAT-GTATGAGTATTCATGTCTGCCATATTTAAGAGATAAACTTTGATTCTATC
195 AAAGAATGGGGAATAGTATGAGTATTCATGTCTGCCTTATTTAAGAGACAAACTTTGATTCTATC
* * * *
44881 AAAAACAGTGGAAAG-AAAAGCTTTTCTTACGACACCAAAGCATCAATGTCATATATCCAAATGA
260 AAAAACGGTGG-AAGTAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAATGA
* * * * * *
44945 A-GAGAATGTGTTTTTGGATCCCAATCTTGAAAAGAATGGAGATAGTCACGAGAATTGAT-CATT
324 ATG-GAATGTGTTTTTGGTTCCCAATCTTGAAAATAATGGAGATTGTTACTAGAATCGATGC-TT
* * * * *
45008 GTCTTATTTAAGGGAAGAACTTTGATTTTAGGGAAAATAAGGCAAAGAAAATATTTGCATGCAAA
387 GTCTTATTTAAGGGATGAACTTTGATTTTAAGTAAAATAGGGCAAAG-AAA-ATTTCCATGCAAA
45073 A
450 A
45074 AAACATATAC
Statistics
Matches: 2387, Mismatches: 351, Indels: 140
0.83 0.12 0.05
Matches are distributed among these distances:
459 3 0.00
460 116 0.05
461 136 0.06
462 140 0.06
463 1 0.00
464 1 0.00
466 2 0.00
467 2 0.00
469 3 0.00
470 36 0.02
471 48 0.02
472 372 0.16
473 261 0.11
474 220 0.09
475 640 0.27
476 320 0.13
477 49 0.02
478 37 0.02
ACGTcount: A:0.36, C:0.14, G:0.19, T:0.31
Consensus pattern (474 bp):
TAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGTTCATTACTAGAATCCAT
GTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGAAAAAAAGCCTTTCTTGT
GAAACCAAAGCACCAATATCGTGTATCCTAATGAGAAGACTATGTTTAAGGTGCCAAATCTTGAA
AAGAATGGGGAATAGTATGAGTATTCATGTCTGCCTTATTTAAGAGACAAACTTTGATTCTATCA
AAAACGGTGGAAGTAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAATGAAT
GGAATGTGTTTTTGGTTCCCAATCTTGAAAATAATGGAGATTGTTACTAGAATCGATGCTTGTCT
TATTTAAGGGATGAACTTTGATTTTAAGTAAAATAGGGCAAAGAAAATTTCCATGCAAAAGAATA
TCATCAATATCATTTATCG
Done.