genome.fa.s2173.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold2173
Parameters: 2 7 7 80 10 50 1000
Length:  21125

Tables:   1   

This is table  1  of  1  ( 26 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1611--1656	23	2.0	23	91	0	74	28	30	21	19	1.98
1634--1781	34	4.4	34	80	13	144	23	33	12	30	1.92
1765--2131	57	6.3	58	82	8	406	27	29	16	26	1.97
1765--2131	29	12.6	29	84	7	406	27	29	16	26	1.97
2208--2668	65	7.0	64	77	12	370	29	32	16	20	1.95
2206--2673	32	14.2	33	75	11	390	29	33	16	21	1.95
2758--3367	49	12.7	49	78	13	581	25	25	17	31	1.97
2680--3330	93	6.9	92	83	11	698	25	25	17	31	1.97
2758--3366	200	3.2	193	82	10	607	25	25	17	31	1.97
3452--3628	92	1.9	92	94	2	311	25	24	17	32	1.97
3455--3628	49	3.7	48	83	10	234	25	24	17	32	1.97
5336--5360	12	2.1	12	100	0	50	32	16	16	36	1.90
5420--5492	20	3.6	20	81	3	101	31	19	13	35	1.91
5399--5492	41	2.3	41	96	0	170	30	18	12	38	1.88
5399--5474	21	3.7	21	78	3	91	30	17	11	40	1.85
6129--6175	23	2.0	23	100	0	94	51	12	4	31	1.59
7960--7998	13	3.0	13	96	0	69	35	15	17	30	1.91
7984--8062	20	3.7	20	75	18	70	45	15	13	25	1.83
10078--10108	15	2.1	15	93	0	53	12	22	16	48	1.80
14170--14195	13	2.0	13	100	0	52	30	15	15	38	1.88
14255--14327	20	3.6	20	77	3	92	32	19	12	35	1.89
14234--14327	41	2.3	41	94	0	161	31	18	11	38	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14234--14309	21	3.7	21	76	3	82	31	17	10	40	1.83
14619--14718	32	3.1	32	95	1	173	35	11	18	36	1.86
14619--14711	13	5.5	18	70	29	80	34	11	18	35	1.87
14789--14917	52	2.5	52	94	0	231	34	18	18	27	1.95

Tables:   1

The End!