Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Scaffold2177

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 9269
ACGTcount: A:0.31, C:0.17, G:0.15, T:0.37


Found at i:1416 original size:10 final size:10

Alignment explanation


    Indices: 1401--1426  Score: 52
    Period size: 10  Copynumber: 2.6  Consensus size: 10

       1391 AAAAAAAGAT

                      
       1401 TTCTTTTTTA
          1 TTCTTTTTTA

                      
       1411 TTCTTTTTTA
          1 TTCTTTTTTA

                  
       1421 TTCTTT
          1 TTCTTT

       1427 ATTGTTATTC


Statistics
Matches: 16,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  10   16  1.00

ACGTcount: A:0.08, C:0.12, G:0.00, T:0.81


Consensus pattern (10 bp):   
TTCTTTTTTA
Done.