genome.fa.s2179.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold2179
Parameters: 2 7 7 80 10 50 1000
Length:  149774

Tables:   1   

This is table  1  of  1  ( 90 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4995--5043	13	3.7	13	76	13	55	22	0	2	75	0.90
5919--5974	21	2.5	22	85	8	69	7	14	37	41	1.73
6539--6604	31	2.1	31	94	0	114	16	27	19	36	1.93
6660--6704	17	2.6	17	80	13	56	20	2	0	77	0.87
7272--7387	51	2.3	51	86	1	151	43	11	13	31	1.80
9441--9474	16	2.1	16	88	5	50	64	5	0	29	1.17
11515--11563	2	24.5	2	91	0	71	42	0	6	51	1.27
14160--14279	27	4.5	26	71	18	72	33	2	0	63	1.14
14187--14224	18	2.1	18	90	5	58	28	0	2	68	1.03
14198--14282	35	2.5	33	82	14	102	31	3	1	63	1.19
14243--14302	21	3.0	20	70	18	54	30	6	0	63	1.20
14372--14451	18	4.2	20	77	18	80	67	3	0	28	1.08
14372--14450	39	2.0	39	83	9	99	68	3	0	27	1.07
15161--15185	13	1.9	13	100	0	50	28	0	16	56	1.41
15460--15489	3	10.0	3	92	0	51	33	3	0	63	1.11
18634--18672	20	1.9	21	94	5	71	43	20	15	20	1.88
20872--20920	21	2.3	20	83	10	62	67	0	20	12	1.22
20886--20932	21	2.2	21	92	0	76	57	0	19	23	1.41
20949--20989	21	2.0	21	85	9	57	51	12	19	17	1.76
27447--27487	20	2.0	22	90	9	68	43	24	14	17	1.86
27797--27826	15	2.0	15	100	0	60	33	20	13	33	1.91
35902--35998	47	2.1	47	88	0	140	41	17	9	31	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40660--40703	21	2.1	21	83	8	54	25	31	4	38	1.76
42508--42533	13	2.0	13	100	0	52	38	15	15	30	1.88
44605--44635	15	2.1	15	93	0	53	12	22	16	48	1.80
46431--46478	21	2.2	23	78	14	57	22	18	4	54	1.61
46433--46478	22	2.2	20	84	7	56	21	19	4	54	1.61
52726--52780	20	2.7	21	91	5	87	34	20	12	32	1.90
52808--52865	19	3.1	18	85	11	80	34	17	13	34	1.89
61167--61196	13	2.3	13	94	0	51	40	10	16	33	1.82
61147--61210	33	1.9	33	90	6	103	35	15	14	34	1.88
61241--61312	20	3.7	19	81	9	74	37	15	13	33	1.87
61263--61308	19	2.4	19	85	3	56	41	15	13	30	1.85
63649--63677	2	15.0	2	92	7	51	48	0	0	51	1.00
64533--64720	72	2.6	72	79	1	216	25	15	19	39	1.90
64563--64761	72	2.8	72	80	3	168	27	15	18	38	1.91
66549--66818	140	1.9	142	88	3	411	45	10	9	34	1.71
66801--66841	22	1.9	21	90	5	64	43	0	0	56	0.99
66830--66869	16	2.5	16	95	0	71	20	0	0	80	0.72
67984--68053	35	2.0	36	91	2	115	31	28	2	37	1.72
68306--68344	19	2.0	20	85	5	53	23	20	25	30	1.98
76121--76177	19	2.9	19	86	5	69	35	15	19	29	1.93
76143--76205	32	1.9	33	90	3	101	39	14	17	28	1.89
76646--76709	11	5.7	11	82	8	76	1	18	0	79	0.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
76648--76713	12	5.7	12	84	10	84	1	18	0	80	0.79
76644--76714	23	3.1	23	95	0	124	1	18	0	80	0.79
77251--77717	165	2.8	165	79	6	489	49	8	11	29	1.70
77236--77762	165	3.2	164	76	9	487	48	7	11	31	1.68
82913--82942	13	2.3	13	94	0	51	40	13	13	33	1.83
82988--83045	20	3.0	20	80	7	75	39	17	10	32	1.83
88947--89561	165	3.7	163	77	7	523	51	7	10	30	1.64
94508--94552	19	2.3	20	85	14	67	44	4	0	51	1.21
96540--96583	21	2.1	21	83	8	54	25	31	4	38	1.76
98386--98410	13	1.9	13	100	0	50	36	16	16	32	1.90
100470--100500	15	2.1	15	93	0	53	12	22	16	48	1.80
108350--108892	157	3.5	156	81	4	606	38	17	15	28	1.91
109005--109366	166	2.2	164	83	8	457	42	12	13	32	1.81
109681--109707	13	2.1	13	100	0	54	29	14	14	40	1.86
109756--109810	20	2.7	21	86	11	78	34	12	20	32	1.90
111379--111403	3	8.3	3	100	0	50	32	0	36	32	1.58
118465--118521	19	2.9	19	81	2	69	33	15	15	35	1.90
118571--118619	13	4.2	13	75	24	63	32	12	18	36	1.88
118550--118619	33	2.1	34	92	7	117	34	11	18	35	1.87
120836--121379	153	3.6	152	85	2	698	50	7	8	32	1.62
120838--121420	304	1.9	306	83	3	764	50	8	8	32	1.63
122591--122701	33	3.5	33	78	9	124	42	18	18	20	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
122478--123023	65	8.4	65	79	6	466	43	16	22	17	1.88
122808--122907	33	3.1	31	73	12	94	45	19	21	15	1.86
123468--123648	76	2.4	74	76	4	184	44	13	15	25	1.84
123616--123858	76	3.2	75	84	1	279	46	11	13	27	1.79
123656--123852	76	2.6	75	86	4	286	47	9	14	28	1.74
125205--125530	111	2.9	111	83	5	412	37	13	15	34	1.86
126440--126494	20	2.7	20	82	2	65	0	7	9	83	0.81
126458--126494	11	3.3	11	88	7	56	0	2	8	89	0.58
128679--128729	19	2.6	20	84	3	68	37	17	17	27	1.93
135826--135850	3	8.3	3	100	0	50	32	32	0	36	1.58
136571--136637	37	1.9	35	88	11	102	29	25	11	32	1.92
137097--137122	13	2.0	13	100	0	52	30	15	15	38	1.88
137818--137863	21	2.2	21	84	7	58	28	30	2	39	1.69
138932--138956	13	1.9	13	100	0	50	32	16	16	36	1.90
140477--140641	84	2.0	84	83	4	208	25	18	3	52	1.62
141030--141071	21	2.0	21	85	0	57	23	28	4	42	1.74
142164--142230	37	1.9	35	88	11	102	29	25	11	32	1.92
142685--142710	13	2.0	13	100	0	52	30	15	15	38	1.88
143405--143450	21	2.2	21	84	7	58	26	30	4	39	1.75
144518--144542	13	1.9	13	100	0	50	32	16	16	36	1.90
146061--146225	84	2.0	84	83	4	208	25	18	3	52	1.62
146613--146654	21	2.0	21	85	0	57	23	28	4	42	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
147747--147813	37	1.9	35	88	11	102	29	25	11	32	1.92
148270--148295	13	2.0	13	100	0	52	30	15	15	38	1.88

Tables:   1

The End!