genome.fa.s2182.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold2182
Parameters: 2 7 7 80 10 50 1000
Length:  59036

Tables:   1   

This is table  1  of  1  ( 49 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3994--4287	92	3.2	92	77	4	297	30	25	12	31	1.93
4920--5069	44	3.4	44	80	3	169	22	24	14	39	1.91
5128--5808	85	8.1	85	82	5	680	19	20	13	46	1.84
5133--5765	42	14.9	42	67	10	250	18	21	13	46	1.83
5432--5622	43	4.5	44	75	10	175	15	23	15	46	1.83
5128--5826	255	2.8	254	83	4	851	19	20	13	46	1.83
7367--7430	19	3.7	19	70	23	68	34	12	18	34	1.89
7368--7475	32	3.4	32	89	2	164	35	12	17	34	1.88
7387--7443	13	3.9	13	72	24	51	36	14	17	31	1.89
7493--7642	52	2.9	52	92	2	248	36	16	17	30	1.92
11350--12105	92	8.0	92	90	3	1073	32	18	24	24	1.97
12100--12294	33	5.9	33	81	3	187	20	16	30	31	1.95
12116--12294	65	2.7	65	86	2	234	20	17	30	32	1.95
12093--12294	66	3.1	65	84	4	239	19	16	31	32	1.95
12123--12299	98	1.8	97	86	4	257	21	16	30	31	1.96
12287--12399	34	3.4	34	82	4	140	32	12	33	21	1.90
20485--20634	52	2.9	52	90	2	239	30	16	16	36	1.91
20590--20636	21	2.2	21	88	3	67	29	14	14	40	1.87
20673--20761	19	5.3	19	67	29	58	37	17	11	33	1.86
20652--20759	32	3.4	32	89	2	164	34	17	12	35	1.88
20684--20740	13	3.9	13	72	24	51	31	17	14	36	1.89
22372--22994	85	7.3	85	83	3	718	47	13	20	18	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
22372--22901	43	12.5	42	68	10	235	47	13	21	17	1.82
22293--22993	170	4.2	169	82	4	783	46	13	21	18	1.84
22343--22994	255	2.6	254	84	4	857	46	13	20	18	1.83
23053--23212	44	3.7	45	79	6	177	40	14	23	22	1.90
23805--24134	92	3.6	91	81	3	340	33	13	23	30	1.92
29707--29789	36	2.5	33	78	14	98	32	27	10	28	1.91
29720--29791	36	2.0	36	91	2	119	27	30	9	31	1.89
30971--31113	68	2.1	68	88	3	207	32	25	2	38	1.71
31713--31775	33	2.0	31	84	6	81	39	17	14	28	1.89
35740--35822	13	5.9	13	81	15	103	36	13	16	33	1.88
35720--35846	32	4.1	32	86	12	185	34	11	18	35	1.87
35897--36045	52	2.9	51	89	6	203	34	17	18	30	1.94
42446--42570	52	2.4	52	95	0	223	28	17	18	36	1.94
42446--42590	52	2.8	51	89	4	211	29	17	18	34	1.94
42579--42603	13	1.9	13	100	0	50	36	16	16	32	1.90
42643--42712	33	2.1	33	89	0	104	40	14	11	34	1.82
42668--42692	13	1.9	13	100	0	50	32	16	16	36	1.90
44605--44723	59	2.0	59	86	0	166	26	20	29	24	1.99
44600--44709	28	3.8	28	73	15	98	25	20	30	23	1.99
44743--44813	27	2.6	28	84	4	90	23	19	33	22	1.97
44824--45135	52	5.9	52	69	15	176	32	12	25	30	1.92
44954--45026	27	2.6	28	87	8	105	21	20	31	26	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45017--45135	51	2.3	53	85	7	154	33	11	22	31	1.90
46936--46965	10	3.1	10	95	4	53	0	0	23	76	0.78
48399--48543	26	5.3	26	62	23	75	20	18	32	28	1.96
48078--48865	55	14.3	55	90	4	1218	21	20	29	29	1.98
55534--55567	17	2.0	17	88	0	50	5	26	17	50	1.69

Tables:   1

The End!