Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold2187
Parameters: 2 7 7 80 10 50 1000
Length:  29891

Tables:   1   

This is table  1  of  1  ( 28 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
84--115
7
4.6
7
96
0
55
46
37
0
15
1.46
5631--5687
22
2.6
22
89
10
91
64
8
8
17
1.46
6596--6670
20
3.8
20
72
0
69
40
10
14
34
1.81
6593--6669
40
1.9
39
84
2
100
40
11
14
33
1.82
7280--8154
28
30.6
28
85
8
1004
21
17
32
27
1.96
7280--8154
58
15.3
57
86
7
1109
21
17
32
27
1.96
7281--8153
255
3.4
256
91
2
1346
21
17
32
27
1.96
9384--9432
1
49.0
1
79
0
53
0
2
8
89
0.55
9386--9433
24
2.0
24
95
0
87
0
2
10
87
0.62
9373--9432
10
5.6
10
81
15
59
1
3
8
86
0.74
9373--9433
9
6.9
9
75
21
58
1
3
9
85
0.78
19933--19980
25
1.9
25
86
0
69
87
8
4
0
0.66
20962--22025
55
19.3
55
88
6
1516
28
29
20
21
1.98
21009--21259
27
9.3
26
61
18
77
28
31
19
20
1.97
21647--21734
29
3.1
29
61
26
71
27
34
19
19
1.96
21890--21979
26
3.3
26
66
19
67
27
33
18
20
1.96
22688--22755
19
3.9
19
78
21
85
35
11
14
38
1.83
22690--22752
32
2.0
32
96
0
117
34
12
15
36
1.86
22709--22733
13
1.9
13
100
0
50
36
16
16
32
1.90
22798--22823
13
2.0
13
100
0
52
30
15
15
38
1.88
22778--22844
33
2.0
33
88
0
98
25
14
16
43
1.86
25298--25467
52
3.3
51
79
12
186
29
24
12
32
1.93
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
25451--25527
28
2.8
28
87
0
100
23
33
19
23
1.97
25481--25682
76
2.6
78
79
5
214
25
30
16
28
1.97
26794--26829
13
2.8
13
100
0
72
33
16
13
36
1.89
26952--26998
22
2.2
22
85
14
64
31
21
0
46
1.51
29373--29403
13
2.4
13
94
0
53
35
16
12
35
1.87
29357--29423
33
2.0
33
85
5
91
34
13
16
35
1.88

Tables:   1

The End!