Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold2188
Parameters: 2 7 7 80 10 50 1000
Length:  73181

Tables:   1   

This is table  1  of  1  ( 27 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2731--2845
52
2.2
52
93
0
194
29
15
17
37
1.91
2731--2867
52
2.6
52
83
4
161
30
15
18
35
1.92
2944--2968
13
1.9
13
100
0
50
32
16
16
36
1.90
2922--2988
33
2.0
33
88
0
98
40
13
11
34
1.81
3788--4219
49
8.7
52
81
9
374
31
17
25
25
1.97
3851--4225
49
7.7
49
84
5
494
30
17
26
25
1.98
3785--4225
98
4.5
98
84
7
554
31
17
26
25
1.97
3851--4225
147
2.6
142
87
5
547
30
17
26
25
1.98
17894--17964
27
2.6
28
88
6
110
47
0
0
52
1.00
19496--19534
21
1.9
20
89
5
60
25
2
7
64
1.33
19618--19667
22
2.3
22
86
3
66
38
4
0
58
1.17
19755--19816
22
2.8
22
100
0
124
43
4
14
37
1.67
20137--20166
9
3.3
9
95
0
51
0
46
0
53
1.00
23437--23474
3
12.7
3
100
0
76
31
0
0
68
0.90
25624--25666
22
2.0
22
85
0
59
34
9
2
53
1.46
36459--36521
1
63.0
1
83
0
72
90
4
4
0
0.55
36463--36522
30
2.0
30
93
3
102
88
5
6
0
0.63
56194--56236
22
2.0
22
85
0
59
32
4
11
51
1.59
60228--60295
19
3.9
18
75
23
74
38
16
10
35
1.82
60250--60274
13
1.9
13
100
0
50
32
16
16
36
1.90
60231--60293
32
2.0
32
93
0
108
36
17
11
34
1.85
63092--63162
27
2.6
28
88
6
110
47
0
0
52
1.00
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
64712--64750
21
1.9
20
89
5
60
25
2
7
64
1.33
64834--64883
22
2.3
22
86
3
66
38
4
0
58
1.17
65330--65359
9
3.3
9
95
0
51
0
46
0
53
1.00
65917--65947
2
15.5
2
100
0
62
48
0
0
51
1.00
68624--68660
3
12.7
3
94
5
67
32
0
0
67
0.91

Tables:   1

The End!