genome.fa.s2191.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold2191
Parameters: 2 7 7 80 10 50 1000
Length:  67951

Tables:   1   

This is table  1  of  1  ( 41 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7980--8051	28	2.6	28	88	0	99	23	19	34	22	1.96
8040--8373	52	6.4	51	71	14	216	32	12	25	29	1.92
8194--8267	27	2.7	28	89	6	107	22	20	32	24	1.98
7926--8317	107	3.7	104	72	13	312	31	14	27	27	1.95
7932--8378	212	2.1	211	86	3	605	31	13	26	28	1.94
8251--8384	51	2.6	52	80	3	162	33	9	23	32	1.88
13385--13422	13	2.9	13	92	0	58	34	15	15	34	1.90
13620--13650	8	3.8	8	95	4	53	61	25	0	12	1.32
14327--14379	20	2.7	19	82	8	61	41	16	11	30	1.84
20897--20922	13	2.0	13	100	0	52	38	15	15	30	1.88
20879--20942	33	2.0	33	87	9	96	43	14	14	28	1.83
22663--22693	15	2.1	15	93	0	53	48	16	22	12	1.80
27293--27318	13	2.0	13	100	0	52	38	15	15	30	1.88
28108--28146	13	3.0	13	88	0	60	30	20	15	33	1.94
30616--30670	20	2.7	21	85	2	76	34	12	21	30	1.91
30718--30743	13	2.0	13	100	0	52	38	15	15	30	1.88
30700--30763	32	2.0	33	90	3	103	42	15	14	28	1.86
31527--31566	20	2.0	20	95	0	71	27	15	10	47	1.77
31552--31590	13	3.0	13	96	0	69	30	17	15	35	1.91
37692--37717	13	2.0	13	100	0	52	30	15	15	38	1.88
37672--37736	33	2.0	33	90	6	105	29	15	16	38	1.90
40304--40342	13	3.0	13	96	0	69	35	15	17	30	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40328--40406	20	3.7	20	76	15	77	44	13	15	26	1.84
48804--48834	8	3.8	8	95	4	53	61	25	0	12	1.32
53125--53155	3	10.3	3	92	0	53	29	35	0	35	1.58
55348--55412	19	3.8	18	67	24	59	30	13	15	40	1.86
55350--55420	32	2.2	32	92	0	115	30	14	16	38	1.89
55465--55489	13	1.9	13	100	0	50	32	16	16	36	1.90
55443--55542	32	3.1	31	74	9	92	36	18	12	34	1.87
55509--55658	52	2.9	52	95	0	264	38	18	16	27	1.92
55824--55920	19	5.8	18	68	27	79	34	11	17	37	1.86
55826--55928	32	3.2	32	94	0	179	33	11	18	35	1.87
55973--55997	13	1.9	13	100	0	50	32	16	16	36	1.90
55952--56018	34	2.0	33	85	8	91	31	17	11	38	1.87
56006--56134	52	2.5	52	93	0	222	35	18	17	27	1.94
62378--62403	13	2.0	13	100	0	52	30	15	15	38	1.88
62476--62541	20	3.7	20	67	26	65	34	18	18	28	1.94
62476--62539	33	1.9	33	93	0	110	34	18	18	28	1.95
64967--65050	20	3.9	21	72	17	64	41	11	14	32	1.82
65376--65440	20	3.0	22	80	19	91	24	20	9	46	1.79
66917--66957	15	2.7	15	84	3	55	17	19	17	46	1.85

Tables:   1

The End!