genome.fa.s2192.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold2192
Parameters: 2 7 7 80 10 50 1000
Length:  72827

Tables:   1   

This is table  1  of  1  ( 68 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6132--6188	27	2.1	27	81	12	64	52	3	1	42	1.28
6290--6323	15	2.2	16	89	5	52	47	0	0	52	1.00
6427--6642	34	6.4	34	85	1	274	25	7	26	40	1.83
6427--6644	67	3.2	66	85	2	292	25	7	26	40	1.82
6427--6642	101	2.1	101	91	1	344	25	7	26	40	1.83
11032--11215	34	5.5	34	84	3	221	25	7	26	40	1.82
11032--11215	67	2.7	67	91	0	278	25	7	26	40	1.82
11032--11215	101	1.8	100	87	3	271	25	7	26	40	1.82
12814--12855	20	2.1	20	100	0	84	45	19	9	26	1.80
13510--13550	12	3.7	12	78	18	52	39	0	0	60	0.96
13505--13548	21	2.2	20	91	4	70	31	0	0	68	0.90
14273--14297	13	1.9	13	100	0	50	32	8	36	24	1.84
14392--14461	27	2.6	27	77	8	79	52	15	4	27	1.61
16346--16391	21	2.1	22	84	4	58	19	30	19	30	1.97
24447--24471	7	3.6	7	100	0	50	44	0	0	56	0.99
24998--25031	15	2.1	17	89	10	54	38	0	0	61	0.96
25782--26064	110	2.5	113	84	8	360	53	1	2	42	1.24
26036--26113	23	3.3	23	75	12	79	60	6	2	30	1.35
26375--26718	124	2.8	122	84	11	443	41	2	1	54	1.25
26376--26764	124	3.1	121	78	15	400	41	2	1	53	1.25
27330--27801	91	5.2	92	83	7	599	41	8	16	34	1.79
27343--27801	178	2.5	179	84	5	602	41	8	16	33	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
27734--28008	70	4.0	70	85	7	329	43	8	16	32	1.78
27734--28008	135	2.0	132	81	10	313	43	8	16	32	1.78
27975--28146	92	1.9	91	80	6	204	41	7	18	33	1.78
32112--32466	124	2.9	125	84	6	426	52	2	3	41	1.30
32739--32843	46	2.3	46	80	11	126	32	2	4	60	1.32
32739--32818	22	3.5	23	70	14	67	31	2	5	61	1.31
32760--32837	22	3.4	23	75	12	61	34	3	2	58	1.30
32787--32991	112	1.8	111	88	3	313	43	3	1	50	1.30
33951--33991	21	2.0	20	95	4	73	26	0	0	73	0.84
33990--34046	20	2.8	19	79	12	60	64	0	1	33	1.04
35334--35399	27	2.4	28	89	2	98	24	6	21	48	1.72
35334--35404	28	2.6	27	88	2	97	23	5	22	47	1.72
35481--35525	20	2.2	20	88	0	63	11	48	4	35	1.59
39660--39714	24	2.3	24	96	0	101	41	3	29	25	1.72
39931--40001	27	2.6	27	84	6	90	23	5	23	46	1.74
40078--40122	20	2.2	20	88	0	63	11	48	4	35	1.59
44504--44537	11	2.9	11	87	12	50	73	0	0	26	0.83
44945--44978	14	2.4	14	90	5	50	44	0	0	55	0.99
45855--45927	32	2.3	32	85	0	92	36	1	6	54	1.36
45877--45967	16	5.7	16	75	5	85	38	3	4	53	1.37
45873--45924	26	2.0	25	82	14	61	38	1	3	55	1.29
45905--45967	32	2.0	32	90	0	99	38	3	4	53	1.38
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45905--45988	32	2.6	32	83	7	91	35	5	5	52	1.50
46867--46896	16	1.9	15	93	6	51	26	13	6	53	1.64
47353--47407	16	3.4	16	79	0	56	21	18	16	43	1.88
47421--47471	16	3.2	16	88	5	68	21	13	19	45	1.85
54030--54103	20	3.8	20	87	10	116	35	17	13	33	1.89
54070--54134	33	2.0	32	87	3	94	38	15	16	29	1.90
56404--56449	22	2.3	21	82	17	62	47	0	21	30	1.51
56404--56482	21	3.9	20	72	21	58	46	0	20	32	1.51
56416--56457	21	2.0	22	85	4	59	52	0	19	28	1.46
56685--56727	19	2.2	20	84	8	54	53	16	2	27	1.55
58972--59165	97	2.0	97	95	0	352	31	17	14	36	1.90
61168--61236	3	23.0	3	84	0	93	28	33	0	37	1.58
62886--62926	20	2.0	21	95	4	75	34	19	12	34	1.89
62907--62933	13	2.1	13	100	0	54	40	14	14	29	1.86
64113--64168	21	2.7	21	94	0	103	33	10	10	44	1.74
64209--64262	20	2.6	21	85	5	83	35	9	18	37	1.83
65614--65673	4	16.2	4	77	19	51	76	0	1	21	0.87
65614--65673	7	8.1	8	75	17	51	76	0	1	21	0.87
65610--65682	37	1.9	37	88	2	110	76	0	2	20	0.90
65733--65853	14	8.9	14	73	15	85	27	20	9	42	1.84
65738--65806	18	3.4	18	72	24	66	26	21	11	40	1.87
65731--65831	43	2.3	44	91	3	161	26	19	9	43	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
66001--66062	25	2.5	26	92	5	101	45	11	24	19	1.83
66528--66598	33	2.2	32	82	10	81	47	30	18	2	1.63

Tables:   1

The End!