Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold2199
Parameters: 2 7 7 80 10 50 1000
Length:  52108

Tables:   1   

This is table  1  of  1  ( 28 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3909--3946
20
1.9
20
88
0
58
44
0
2
52
1.14
4844--4873
15
2.0
15
93
0
51
56
13
0
30
1.37
12316--12361
21
2.2
21
84
0
56
47
8
8
34
1.65
12316--12368
21
2.5
20
79
11
52
47
7
9
35
1.64
14304--14343
19
2.1
19
86
9
55
47
5
2
45
1.38
14716--14755
16
2.5
15
84
15
53
35
0
0
65
0.93
18903--19123
34
6.5
33
81
8
248
42
24
7
26
1.80
18903--19123
68
3.3
67
82
3
273
42
24
7
26
1.80
18903--19123
102
2.2
101
86
1
325
42
24
7
26
1.80
23530--23748
34
6.5
33
83
3
240
41
24
7
26
1.81
23530--23746
68
3.2
66
83
3
272
41
23
7
27
1.81
23530--23748
102
2.2
101
83
3
287
41
24
7
26
1.81
27325--27390
27
2.5
26
83
11
80
40
0
4
54
1.21
27337--27392
26
2.3
23
74
25
62
42
0
3
53
1.18
27325--27399
27
2.8
26
76
15
73
41
1
4
53
1.28
27612--27653
16
2.5
17
84
3
59
69
2
0
28
1.01
29660--29755
32
3.1
32
80
15
96
41
2
0
56
1.11
30204--30238
16
2.1
16
89
5
52
71
0
5
22
1.07
31222--31290
25
2.6
26
75
18
63
52
1
2
43
1.25
36883--36907
3
8.3
3
100
0
50
32
0
0
68
0.90
44243--44292
23
2.1
24
88
3
75
36
0
0
64
0.94
44330--44395
27
2.4
29
80
10
75
66
1
0
31
1.01
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
44490--44525
2
18.0
2
100
0
72
50
0
0
50
1.00
44854--44902
20
2.4
21
89
3
73
40
12
16
30
1.85
45017--45409
198
2.0
198
89
2
601
38
28
7
26
1.82
48150--48211
17
3.5
16
74
21
61
70
0
0
29
0.87
48154--48223
21
3.5
20
77
15
83
72
0
0
27
0.84
48186--48250
21
3.0
22
82
4
71
66
0
0
33
0.92

Tables:   1

The End!