genome.fa.s2202.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold2202
Parameters: 2 7 7 80 10 50 1000
Length:  52241

Tables:   1   

This is table  1  of  1  ( 65 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2561--2622	1	62.0	1	73	0	52	87	12	0	0	0.55
2561--2622	11	5.3	12	85	11	85	87	12	0	0	0.55
2859--2915	1	57.0	1	85	0	78	92	5	1	0	0.42
2858--2915	19	3.0	19	90	10	91	91	6	1	0	0.49
2859--2924	23	2.7	23	90	6	96	89	6	4	0	0.59
3864--4205	32	10.8	32	89	6	294	23	31	15	29	1.95
3864--4208	125	2.7	123	83	7	361	23	31	15	29	1.95
4159--4260	54	2.0	50	92	7	168	21	35	13	29	1.92
4125--4293	87	2.0	84	91	3	275	21	34	13	30	1.91
4209--4352	33	4.1	35	83	11	179	20	34	11	33	1.88
4209--4352	35	4.1	35	82	9	177	20	34	11	33	1.88
4338--4406	33	2.0	35	94	5	124	26	36	17	20	1.94
4505--5294	43	17.1	44	81	11	840	25	24	17	31	1.97
4452--5289	92	9.0	91	89	6	967	25	25	17	31	1.97
5129--5196	21	3.2	21	62	25	52	26	27	17	27	1.98
5145--5215	21	3.2	24	61	19	62	26	25	19	28	1.99
5150--5218	22	3.2	22	62	25	56	26	26	17	30	1.97
5194--5331	52	2.6	52	84	3	177	24	24	15	34	1.95
6163--6187	13	1.9	13	100	0	50	36	16	16	32	1.90
6251--6275	13	1.9	13	100	0	50	32	16	16	36	1.90
6284--6408	52	2.4	52	95	0	223	36	18	17	28	1.94
12621--12749	52	2.5	52	94	0	222	31	17	16	34	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12823--12889	33	2.0	33	88	0	98	40	14	11	32	1.83
12845--12869	13	1.9	13	100	0	50	32	16	16	36	1.90
13536--13892	52	6.4	54	71	16	196	36	14	24	24	1.93
13563--14685	49	23.1	52	77	15	506	32	16	24	25	1.96
13671--13797	67	1.9	68	86	1	184	38	12	25	23	1.90
13810--14730	92	10.0	93	93	4	1064	30	18	24	26	1.97
14477--14545	22	3.2	22	62	25	56	30	17	26	26	1.97
13854--14730	276	3.2	272	89	7	1242	30	18	24	26	1.98
14725--15052	65	5.0	65	93	2	529	18	17	35	27	1.94
14723--15051	32	10.2	31	88	7	487	18	17	35	28	1.93
15088--15523	34	13.6	33	71	17	251	33	13	33	20	1.91
15057--15519	61	7.3	61	85	6	518	33	12	33	20	1.90
15255--15418	27	5.6	27	72	18	139	28	14	36	20	1.92
15371--15430	27	2.2	27	84	0	75	31	13	35	20	1.91
15152--15586	122	3.5	123	82	8	456	31	13	33	21	1.92
15504--15549	23	2.0	23	95	0	83	17	21	32	28	1.96
15470--15583	57	2.0	58	87	3	167	27	17	31	23	1.97
15525--15620	33	2.8	34	85	4	122	33	14	29	22	1.94
16574--16630	19	3.1	18	82	10	71	0	5	8	85	0.72
23593--23721	52	2.5	52	96	0	231	30	17	17	34	1.93
23795--23861	33	2.0	33	88	0	98	40	14	11	32	1.83
23817--23841	13	1.9	13	100	0	50	32	16	16	36	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31112--31260	52	2.9	51	87	4	226	30	16	18	33	1.94
31249--31273	13	1.9	13	100	0	50	36	16	16	32	1.90
31314--31380	33	2.0	33	88	0	98	40	14	11	32	1.83
31336--31360	13	1.9	13	100	0	50	32	16	16	36	1.90
32219--32505	52	5.1	55	77	13	244	37	13	24	24	1.92
32111--32505	174	2.3	174	96	0	736	37	14	24	23	1.92
32415--32694	48	5.9	47	83	9	327	32	17	24	26	1.97
32712--32835	28	4.3	29	80	9	130	17	15	29	37	1.91
32878--33054	29	5.9	29	78	10	169	26	16	29	27	1.97
34438--34500	1	63.0	1	77	0	63	0	0	11	88	0.50
34438--34500	15	4.4	14	90	6	99	0	0	11	88	0.50
34438--34499	24	2.6	25	87	12	94	0	0	11	88	0.51
34440--34500	29	2.1	28	91	8	97	0	0	11	88	0.51
48298--48446	52	2.9	51	89	4	235	30	17	18	32	1.94
48435--48459	13	1.9	13	100	0	50	36	16	16	32	1.90
48500--48566	33	2.0	33	88	0	98	40	14	11	32	1.83
48522--48546	13	1.9	13	100	0	50	32	16	16	36	1.90
48871--48934	13	4.9	13	82	0	83	31	10	18	39	1.86
48871--48934	26	2.5	26	97	0	119	31	10	18	39	1.86
49375--49414	20	1.9	21	85	10	55	12	45	35	7	1.70
51366--51390	13	1.9	13	100	0	50	32	16	16	36	1.90

Tables:   1

The End!