genome.fa.s2205.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold2205
Parameters: 2 7 7 80 10 50 1000
Length:  40168

Tables:   1   

This is table  1  of  1  ( 29 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3684--3710	13	2.1	13	100	0	54	29	14	14	40	1.86
3665--3726	33	1.9	32	90	3	97	29	14	16	40	1.88
3694--3812	20	5.8	20	67	20	77	33	19	14	32	1.92
7228--7601	34	11.5	35	69	16	134	22	29	10	37	1.88
7388--7445	27	2.1	27	87	0	80	24	27	10	37	1.88
7415--7643	68	3.4	67	86	4	307	22	31	9	37	1.86
7320--7710	34	12.0	33	71	15	224	22	29	10	37	1.88
7618--7816	27	7.2	27	76	11	170	23	30	13	33	1.92
7525--7737	61	3.4	60	76	11	169	22	30	11	35	1.90
7688--7816	53	2.4	53	90	1	204	23	32	13	31	1.93
7817--7917	32	3.2	32	83	6	125	28	36	14	19	1.92
13592--13641	20	2.5	20	83	0	55	32	8	18	42	1.79
17108--17660	166	3.3	165	87	6	767	28	12	9	50	1.71
17108--17728	166	3.7	164	81	8	682	27	12	10	49	1.73
18300--18340	11	3.6	11	87	6	64	78	2	19	0	0.87
21618--21642	13	1.9	13	100	0	50	32	16	16	36	1.90
21630--21682	20	2.6	21	82	8	65	37	15	16	30	1.90
21744--21769	13	2.0	13	100	0	52	30	15	15	38	1.88
21723--21791	33	2.1	33	91	5	113	36	18	13	31	1.89
23363--23393	3	10.3	3	92	0	53	35	0	35	29	1.58
25834--25873	15	2.6	15	84	4	53	45	15	22	17	1.85
27720--27750	8	3.8	8	95	4	53	12	0	25	61	1.32
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
27948--27985	13	2.9	13	92	0	58	34	15	15	34	1.90
28428--28470	20	2.0	22	86	8	63	18	46	30	4	1.69
33563--33614	20	2.7	19	88	11	79	34	17	15	32	1.91
33643--33707	33	2.0	32	88	11	96	38	15	15	30	1.88
34474--34525	21	2.5	21	81	9	63	38	15	17	28	1.90
34555--34622	33	2.1	32	86	2	91	35	19	13	32	1.90
36203--36244	3	14.0	3	89	0	66	33	0	35	30	1.58

Tables:   1

The End!