genome.fa.s2209.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold2209
Parameters: 2 7 7 80 10 50 1000
Length:  83008

Tables:   1   

This is table  1  of  1  ( 53 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3126--3200	27	2.7	27	87	2	96	21	21	34	22	1.97
3185--3734	52	10.4	51	68	17	203	31	12	26	29	1.93
3119--3738	213	2.9	213	94	2	1059	30	13	27	28	1.94
3343--3411	27	2.5	27	88	6	95	23	21	30	24	1.99
6057--6123	33	2.0	33	88	0	98	43	16	14	25	1.86
6078--6103	13	2.0	13	100	0	52	38	15	15	30	1.88
6143--6210	19	3.9	18	73	23	74	39	14	10	35	1.80
6146--6208	32	2.0	32	93	0	108	38	15	11	34	1.83
11543--11585	3	14.3	3	95	0	77	30	32	0	37	1.58
13153--13206	20	2.7	20	88	5	74	35	18	12	33	1.89
13267--13305	20	1.9	21	94	5	71	20	20	23	35	1.96
14251--14280	14	2.1	14	93	0	51	66	0	16	16	1.25
14273--14315	13	3.4	12	81	12	50	65	2	25	6	1.30
20959--21014	28	2.0	28	100	0	112	21	28	17	32	1.96
23016--23146	66	2.0	67	93	1	228	37	3	8	51	1.48
25325--25354	5	6.0	5	92	0	51	0	23	0	76	0.78
25818--25859	22	1.9	22	85	9	59	47	0	0	52	1.00
26599--26652	26	2.1	26	82	6	65	75	0	18	5	0.98
26615--26653	13	2.8	14	88	7	53	79	0	17	2	0.84
28974--29007	16	2.1	16	88	5	50	64	5	0	29	1.17
31049--31103	2	27.5	2	92	0	92	45	0	3	50	1.19
33699--33818	27	4.5	26	71	18	72	33	2	0	63	1.14
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33726--33763	18	2.1	18	90	5	58	28	0	2	68	1.03
33737--33821	35	2.5	33	82	14	102	31	3	1	63	1.19
33782--33841	21	3.0	20	70	18	54	30	6	0	63	1.20
33914--33988	18	4.0	18	77	19	57	68	4	0	28	1.08
33911--33988	39	2.0	38	85	7	104	67	3	0	28	1.07
33944--33989	16	2.7	17	78	18	51	69	4	0	26	1.07
34697--34721	13	1.9	13	100	0	50	28	0	16	56	1.41
35181--35363	34	5.4	34	86	0	251	26	7	26	39	1.83
35668--35730	19	3.3	19	90	0	90	28	17	19	34	1.94
39796--39980	34	5.5	34	86	0	255	26	7	25	40	1.82
45486--45534	21	2.3	20	83	10	62	67	0	20	12	1.22
45500--45546	21	2.2	21	92	0	76	57	0	19	23	1.41
45563--45603	21	2.0	21	85	9	57	51	12	19	17	1.76
53542--53669	52	2.5	52	93	3	215	29	17	17	34	1.94
53542--53689	52	2.9	50	84	12	185	31	17	18	33	1.94
53678--53702	13	1.9	13	100	0	50	36	16	16	32	1.90
53743--53809	33	2.0	33	88	0	98	40	13	11	34	1.81
53765--53789	13	1.9	13	100	0	50	32	16	16	36	1.90
55416--55456	20	2.0	22	90	9	68	43	24	14	17	1.86
55766--55795	15	2.0	15	100	0	60	33	20	13	33	1.91
59785--59825	20	2.0	22	90	9	68	43	24	14	17	1.86
60135--60164	15	2.0	15	100	0	60	33	20	13	33	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
67109--67193	32	2.7	32	77	1	91	34	14	8	43	1.75
68238--68334	47	2.1	47	90	0	149	40	19	9	30	1.83
69018--69058	19	2.3	17	87	8	55	51	7	2	39	1.43
72265--72290	13	2.0	13	100	0	52	30	15	15	38	1.88
72991--73034	21	2.1	21	83	8	54	25	31	4	38	1.76
74839--74864	13	2.0	13	100	0	52	38	15	15	30	1.88
76944--76974	15	2.1	15	93	0	53	12	22	16	48	1.80
78776--78820	21	2.1	21	84	8	56	22	20	4	53	1.63
81042--81067	13	2.0	13	100	0	52	30	15	15	38	1.88

Tables:   1

The End!