genome.fa.s2211.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold2211
Parameters: 2 7 7 80 10 50 1000
Length:  35910

Tables:   1   

This is table  1  of  1  ( 33 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2032--2151	51	2.3	52	86	1	161	28	29	12	30	1.93
1991--2229	131	1.8	131	84	3	329	28	27	12	31	1.93
2216--2272	27	2.0	29	90	10	91	28	24	12	35	1.91
2084--2309	80	2.9	79	80	10	250	28	26	12	32	1.93
3698--3757	30	2.0	30	87	6	86	15	11	43	30	1.82
3711--3769	30	2.0	30	86	0	82	20	10	40	28	1.85
3801--3929	40	3.2	40	87	0	186	10	17	43	28	1.82
3860--3933	22	3.5	22	73	14	75	13	18	45	21	1.84
4037--4073	17	2.1	18	90	5	58	8	27	10	54	1.63
4036--4157	45	2.7	45	89	5	176	6	22	15	54	1.64
4570--4602	17	1.9	17	93	0	57	15	0	9	75	1.03
5256--5311	21	2.8	21	75	5	62	39	12	12	35	1.81
5328--5368	20	2.0	20	100	0	82	34	19	9	36	1.85
5355--5380	13	2.0	13	100	0	52	30	15	15	38	1.88
9996--10066	20	3.5	20	79	12	83	40	15	14	29	1.86
12011--12219	79	2.6	80	79	5	212	35	11	22	29	1.90
12084--12378	130	2.3	128	78	5	301	35	11	24	28	1.90
11915--12345	209	2.1	209	88	1	641	35	11	23	29	1.90
12170--12285	51	2.2	53	80	7	132	32	9	25	31	1.88
15354--16244	61	14.9	61	84	7	1066	26	19	27	26	1.99
17356--17395	9	4.6	9	84	6	55	0	2	10	87	0.63
17356--17394	8	4.6	8	84	12	51	0	2	10	87	0.65
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17356--17395	17	2.3	18	91	4	64	0	2	10	87	0.63
21974--21999	13	2.0	13	100	0	52	30	15	15	38	1.88
21954--22017	32	2.0	33	90	3	103	28	14	18	39	1.90
21954--22024	19	4.0	18	72	25	62	26	12	21	39	1.89
22707--22817	55	2.0	55	98	1	215	37	25	5	31	1.78
24592--24630	13	3.0	13	100	0	78	38	15	15	30	1.88
28358--28396	13	3.0	13	100	0	78	30	15	15	38	1.88
30169--30274	51	2.0	54	91	7	175	28	5	26	39	1.79
30970--30994	13	1.9	13	100	0	50	36	16	16	32	1.90
30953--31013	33	1.9	30	87	9	86	36	19	14	29	1.92
35508--35538	9	3.4	9	100	0	62	90	9	0	0	0.46

Tables:   1

The End!