Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Scaffold2213

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3063
ACGTcount: A:0.28, C:0.14, G:0.18, T:0.40


Found at i:2726 original size:15 final size:15

Alignment explanation


    Indices: 2706--2737  Score: 55
    Period size: 15  Copynumber: 2.1  Consensus size: 15

       2696 TTTTTTCAAA

                           
       2706 AATACAAAAAAAAAG
          1 AATACAAAAAAAAAG

                        *  
       2721 AATACAAAAAAAGAG
          1 AATACAAAAAAAAAG

              
       2736 AA
          1 AA

       2738 AAAAAGCTAG


Statistics
Matches: 16,  Mismatches: 1, Indels: 0
        0.94            0.06        0.00

Matches are distributed among these distances:
  15   16  1.00

ACGTcount: A:0.78, C:0.06, G:0.09, T:0.06


Consensus pattern (15 bp):   
AATACAAAAAAAAAG
Done.