Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold2216
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 158421
ACGTcount: A:0.31, C:0.19, G:0.16, T:0.34
Found at i:5420 original size:13 final size:13
Alignment explanation
Indices: 5402--5439 Score: 58
Period size: 13 Copynumber: 2.9 Consensus size: 13
5392 CAGCATTCTC
* *
5402 TGTATCGATATAT
1 TGTATCGATACAG
5415 TGTATCGATACAG
1 TGTATCGATACAG
5428 TGTATCGATACA
1 TGTATCGATACA
5440 AAAGGTTTAT
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
13 23 1.00
ACGTcount: A:0.32, C:0.13, G:0.18, T:0.37
Consensus pattern (13 bp):
TGTATCGATACAG
Found at i:5843 original size:20 final size:22
Alignment explanation
Indices: 5818--5862 Score: 67
Period size: 20 Copynumber: 2.1 Consensus size: 22
5808 GCAGCACTCA
*
5818 CCAGGTCACGACC-GGC-ACCC
1 CCAGGTCACAACCGGGCAACCC
5838 CCAGGTCACAACCGGGCAACCC
1 CCAGGTCACAACCGGGCAACCC
5860 CCA
1 CCA
5863 CACTAGTAGC
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
20 12 0.55
21 3 0.14
22 7 0.32
ACGTcount: A:0.24, C:0.49, G:0.22, T:0.04
Consensus pattern (22 bp):
CCAGGTCACAACCGGGCAACCC
Found at i:7258 original size:22 final size:21
Alignment explanation
Indices: 7232--7275 Score: 52
Period size: 21 Copynumber: 2.0 Consensus size: 21
7222 TGAAATTGTT
* *
7232 AAATTATTTTACTAAGGGGGAG
1 AAATT-TTTGACTAACGGGGAG
*
7254 AAATTTTTGATTAACGGGGAG
1 AAATTTTTGACTAACGGGGAG
7275 A
1 A
7276 GACAAGAAAA
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
21 14 0.74
22 5 0.26
ACGTcount: A:0.36, C:0.05, G:0.27, T:0.32
Consensus pattern (21 bp):
AAATTTTTGACTAACGGGGAG
Found at i:7974 original size:13 final size:13
Alignment explanation
Indices: 7956--7981 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
7946 TACACACAAG
7956 ATGTATCGATACA
1 ATGTATCGATACA
7969 ATGTATCGATACA
1 ATGTATCGATACA
7982 TCCCAAAATG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:7998 original size:33 final size:32
Alignment explanation
Indices: 7938--8001 Score: 101
Period size: 33 Copynumber: 2.0 Consensus size: 32
7928 CTTAACTGTT
*
7938 TGTATCGATACACACAAGATGTATCGATACAA
1 TGTATCGATACACACAAAATGTATCGATACAA
*
7970 TGTATCGATACATCCCAAAATGTATCGATACA
1 TGTATCGATACA-CACAAAATGTATCGATACA
8002 TTGGATTGTT
Statistics
Matches: 29, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
32 12 0.41
33 17 0.59
ACGTcount: A:0.39, C:0.20, G:0.14, T:0.27
Consensus pattern (32 bp):
TGTATCGATACACACAAAATGTATCGATACAA
Found at i:9791 original size:475 final size:476
Alignment explanation
Indices: 8679--12813 Score: 4388
Period size: 475 Copynumber: 8.8 Consensus size: 476
8669 TTCATAAACT
* * *** *
8679 AAAAACGCATTCCCTTCAATAGGATACACG-CATTGATGCTTTGGTGTTGTAATAAAAGCTTTTC
1 AAAAACGCATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCACAAGAAAAGCTTTTC
* * * * * *
8743 TTTCCCCCATTTTTGATAGAATCTAAGTTTATATCTTAAAGAAGACAAACAAGAATACTAATACT
66 TTTCCACCATTTTTGATAGAATCAAAGTTTGTATCTTAAATAAGACAAACATGAATACTCATACT
* * * * *
8808 AATCCCCATTCTTTTCAAGATTTGGCACTATAAACATAGTTTTCTCATAAGGATACGTGATATTG
131 AATCCCCATTCTTTTTAGGATTAGGCACTATAAACATAGTCTTCTCATAAGGATAAGTGATATTG
* * * * *
8873 GTGCTTTCGTTTCGCAAGAAAAGCATTTTTCCC-CCTAATTTTTGTAAAGTTTAAGTTCGAGCCT
196 ATGCTTTGGTTTCGCAAGAAAGGCATTTTTCCCACC-AATTTTTGTAAAGTCTAAGTTCGTGCCT
* *
8937 CAAATGAGACAAACATGGATTCTAGTAATGA---TCTTTCATTATACGATTAGGCACTAGAAACA
260 CAAATGAGACAAACATGGATTCTAGTAATGATCTTCTTTCATTTTATGATTAGGCACTAGAAACA
* *
8999 AATTCTCCTCAATAGGATAAATGATATTGATGATTTTCTTTTGCATGGAAATCTTTT-CTGTGCC
325 CATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGGAAATCTTTTCCT-TGCC
* * * * *
9063 TTACTTTCCTTAAAATCAAAGTCCATCCCTTAAATAAGACAACCATCGATTCTCATAATAGTCTC
389 CTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCATAACAGTCTC
*
9128 CATTATTTTC-AGCA-TTGGTAACC
454 CATTCTTTTCAAG-ATTTGG-AACC
* * * * * *
9151 TAAAACACA-TCCTTTCATTAGGATACATGACATTGATGCTTTGATGCCACAAGAAAATCTTTTC
1 AAAAACGCATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCACAAGAAAAGCTTTTC
*** * * *
9215 TTTCCATTGTTTTTGATAGAAACAATGTTTGTCTCTTAAATAAGACAAACATGAATACTCATACT
66 TTTCCACCATTTTTGATAGAATCAAAGTTTGTATCTTAAATAAGACAAACATGAATACTCATACT
** * * * * *
9280 AATCCCCATTCTTTTTAGGATTAGGCACCGTAAACATAGT-TTTTCTTTAGGATAAGCGACATTG
131 AATCCCCATTCTTTTTAGGATTAGGCACTATAAACATAGTCTTCTCATAAGGATAAGTGATATTG
* * * * * *
9344 ATGTTTTGGTTTTGCAAGAAAGGCATTTTTCCCATCAATTTTTGTATAGTCTAAGTTCCTG-TTG
196 ATGCTTTGGTTTCGCAAGAAAGGCATTTTTCCCACCAATTTTTGTAAAGTCTAAGTTCGTGCCT-
* *
9408 CAAATGAGGA-AAATATGGATTCTAGTAATGATCTTCTTTCATTTTGTGATTAGGCACTAGAAAC
260 CAAATGA-GACAAACATGGATTCTAGTAATGATCTTCTTTCATTTTATGATTAGGCACTAGAAAC
* * * ** * ** *
9472 ACATTTTCCTCATTAGGATAAATAATCTTGACAATTTTTTTTTTGCATCAAAATCTTTTCCTCGC
324 ACATTCTCCTCATTAGGATAAATGATATTGATGA-TTTTCTTTTGCATGGAAATCTTTTCCTTGC
** * *
9537 CCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATAAATTCTTATAACAATCT
388 CCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCATAACAGTCT
* *
9602 ACATTCTTTTCAAGATTTTGAACC
453 CCATTCTTTTCAAGATTTGGAACC
* * *
9626 AAAAACGCATTCCCTTCAATAGGATACATGGCATTGATGGTTTGGTGTCACAAGAAAAGCTTTTC
1 AAAAACGCATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCACAAGAAAAGCTTTTC
* * * * * * *
9691 TTTCCACTATTTTTTATAGAATCAAAGCTTGTATCTTAAAGAGGACAAACAAGAATACTAATACT
66 TTTCCACCATTTTTGATAGAATCAAAGTTTGTATCTTAAATAAGACAAACATGAATACTCATACT
* * * *
9756 AA-CCCCATTCTTTTTAAGATGAGGCACTATAAACATAGT-TACCTCATAAGGATACGTGATATT
131 AATCCCCATTCTTTTTAGGATTAGGCACTATAAACATAGTCT-TCTCATAAGGATAAGTGATATT
* ** * * * * *
9819 GGTGCTTTCATTTCACGAGAATGGCATTTTT-CCACCCAATTTTTGTAAAGTTTAAGTTCGAGCC
195 GATGCTTTGGTTTCGCAAGAAAGGCATTTTTCCCA-CCAATTTTTGTAAAGTCTAAGTTCGTGCC
* * * * **
9883 TCAAAGGAGATAAACGTGGATTCTGGTAATGATAATCTTTCATTTTATGATTAGGCACTAGAAAC
259 TCAAATGAGACAAACATGGATTCTAGTAATGATCTTCTTTCATTTTATGATTAGGCACTAGAAAC
* * * * *
9948 ACATTCTCTTCAATA-GATAAATGATATTGATAATTTTCTTTTGCATGAAAATCTTTTCTTTGCC
324 ACATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGGAAATCTTTTCCTTGCC
* * * ** **
10012 CTGTTTTCCTTAAAATCAAAGTTTATCCTTTAAATAAGACAA-CTATCGATTCTTGTAATGGTCT
389 CTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGC-ATCGATTCTCATAACAGTCT
* *
10076 CCATTATTTTCAGGA-TTGGTAACC
453 CCATTCTTTTCAAGATTTGG-AACC
* * * * *
10100 TAAAACACA-TCTCTTCATTAGGATACATGACATTGATGCTTTGGTGCCATAAGAAAAGCTTTTC
1 AAAAACGCATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCACAAGAAAAGCTTTTC
* *
10164 TTTCCACCATTTTTGATAGAATCAATGTTTGTCTCTTAAATAAGACAAACATGAATACTCATACT
66 TTTCCACCATTTTTGATAGAATCAAAGTTTGTATCTTAAATAAGACAAACATGAATACTCATACT
** * * * * * *
10229 AATCCCTTTTCCTTTCAGGATTAGGCACTATAAACATAGTCTTCTCTTTAGGATACGTGACATTG
131 AATCCCCATTCTTTTTAGGATTAGGCACTATAAACATAGTCTTCTCATAAGGATAAGTGATATTG
* * * * * *
10294 ATGTTTTGGTTTTGCAAGAAAGGCATTATTCCTACCAATTTTTGTATAGTCTAAGTTCGTGCCGC
196 ATGCTTTGGTTTCGCAAGAAAGGCATTTTTCCCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTC
* * * * * *
10359 AAATGAGGCAAACATAGATTCTAGTAATGGTCTTCTTTCATTTTGTGATTA-GCACCAAAAACAC
261 AAATGAGACAAACATGGATTCTAGTAATGATCTTCTTTCATTTTATGATTAGGCACTAGAAACAC
* * **
10423 ATTCTCTTCATTAGGATAAATGATATTGTTGATTTTCTTTTGCATGGAAATCTTTT-CTTTACCT
326 ATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGGAAATCTTTTCCTTGCCCT
* ** * * * *
10487 ATTTTCCTTAAAATTAAAGTTCATCCCTCGAATAAGACAAGCATCGA-TCTTACAACAGTCTACG
391 ATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCATAACAGTCTCCA
* *
10551 TTCTTTTTAAG-GTTGTGAACC
456 TTCTTTTCAAGATTTG-GAACC
* * * *
10572 AAAAACGCATTCCCTTAAATGGGATACATGGCATTGATGCTTTGGTGTCACAAGAAAAGCTTTTC
1 AAAAACGCATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCACAAGAAAAGCTTTTC
* * * *
10637 -TTCTCACCATTTTTGATAGAATTAAAGTTTCTATCTTAAATAAGACAAACAAGAATACTAATAC
66 TTTC-CACCATTTTTGATAGAATCAAAGTTTGTATCTTAAATAAGACAAACATGAATACTCATAC
* * * *
10701 TAATCCCCATTCTTTTCAGGATTAGGCACCATAAA-ATAGTCTTCTCATAAGGATACGCGATATT
130 TAATCCCCATTCTTTTTAGGATTAGGCACTATAAACATAGTCTTCTCATAAGGATAAGTGATATT
* * * * * * *
10765 GGTTCTTTCGTTTCACAAGATAA-G-TTTTTTTCCACCGATTTTTGTAAAGTCTAAGTGT-GTGC
195 GATGCTTTGGTTTCGCAAGA-AAGGCATTTTTCCCACCAATTTTTGTAAAGTCTAAGT-TCGTGC
* **
10827 CTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCTTTTATTTTATGATTAGGCA-GGGTAA
258 CTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCTTTCATTTTATGATTAGGCACTAG-AA
* * * *
10891 ACACATTCTCCTTATTAGGATAAACGATATTAATGATTTTCTTTTGCAAGGAAATCTTTT-CTTC
322 ACACATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGGAAATCTTTTCCTT-
* * * * *
10955 ACCCTATTTTCCTTAAAATCGAAGTTCATTCCTTAAAAAAGACAAGCATCGATTCTCATAATAGT
386 GCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCATAACAGT
*
11020 CTCCATTCTTTTCAAGATTGGGAACC
451 CTCCATTCTTTTCAAGATTTGGAACC
** * **
11046 AAAAATACATTCCCCTT-ATTAGGATACATGACATTGATGTTTTGGTGTCATGAGAAAAGCTTTT
1 AAAAACGCATT-CCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCACAAGAAAAGCTTTT
* ** * * *
11110 CTTTCAATTGA-TTTTGATAGACTCAAAGTTTGTCTCTTAAATAAGACAAACATGAATAGTCATA
65 CTTTCCA-CCATTTTTGATAGAATCAAAGTTTGTATCTTAAATAAGACAAACATGAATACTCATA
* * * * * *
11174 CTAATCCCTATTCTTTTTGGGACTAAGCACCATAAACATAGTCTTCTCATTAGGATACA-TGATA
129 CTAATCCCCATTCTTTTTAGGATTAGGCACTATAAACATAGTCTTCTCATAAGGATA-AGTGATA
* * * * * * *
11238 TTAATGTTTTGGTTTCGAAAGAAAGGCATTTTTCCCACGAATTTTTGTATAGTTTAAGTTCATGC
193 TTGATGCTTTGGTTTCGCAAGAAAGGCATTTTTCCCACCAATTTTTGTAAAGTCTAAGTTCGTGC
* * ** * * * * *
11303 CTCAAACGAGGCAAACAACGATTCTTGTAATGATCTTCATTCA-TTTCTGATTAGGTACTATAAA
258 CTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCTTTCATTTTATGATTAGGCACTAGAAA
* * *
11367 CATATTCTCCTCATTAGGATAAATGATATTGATGTTTTTCTTTTGCATGGAAATCTTTTCTTTGC
323 CACATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGGAAATCTTTTCCTTGC
* * * * * **
11432 CCTGTTTTCCTTAAAATCAAA-TTATATCTCTTAAATAAGACAAACATCAATTCTCGCAACAGTC
388 CCTATTTTCCTTAAAATCAAAGTT-CATCCCTTAAATAAGACAAGCATCGATTCTCATAACAGTC
* * *
11496 TCCATTCCTCTCAAGATTGGGAACC
452 TCCATTCTTTTCAAGATTTGGAACC
* * * * *
11521 ATAAA-GACATTCCCTTCATTCGGATACATGACATTGATGCTTTGGCGTCACATGAAAAACTTTT
1 AAAAACG-CATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCACAAGAAAAGCTTTT
* * * * *
11585 CTTTCCACCATTTTTGATAAAATCAAAGATTGTTTCTTAAAAAAGACAAACATGAATAGTCATAC
65 CTTTCCACCATTTTTGATAGAATCAAAGTTTGTATCTTAAATAAGACAAACATGAATACTCATAC
* * *
11650 TAATCCCCATTCTTTTCAGGATTAGGCA-TCATAAACATAGTCTTCCCAAAAGGATACACG-G-T
130 TAATCCCCATTCTTTTTAGGATTAGGCACT-ATAAACATAGTCTTCTCATAAGGATA-A-GTGAT
* * ** *
11712 ATTTAAGCTTTACTTTCGCAAGAAAGG-GTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTTCGC
192 ATTGATGCTTTGGTTTCGCAAGAAAGGCATTT-TTCCCACCAATTTTTGTAAAGTCTAAGTTCG-
* * * *
11776 T-CCTCAAATAAGCCAAACATGG-TTCTAGTAATGATATTCTTTCATTTTATAATTAGGCACTAG
255 TGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCTTTCATTTTATGATTAGGCACTAG
* * * * *
11839 AAACACATTCTCTTCATAAGAAT-AATCGATATTGATGATTTTCCTTTGCATGAAAATCTTTTCC
320 AAACACATTCTCCTCATTAGGATAAAT-GATATTGATGATTTTCTTTTGCATGGAAATCTTTTCC
* * * * *
11903 TTGCCCTGTTTTCCTTGAAATCAAAGTTCATCCCTTAAACAAAACAAGCATCGATTCTCATAATA
384 TTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCATAACA
*
11968 GTCTCCATTCTCTTT-AA-AATTGGCAACC
449 GTCTCCATTCT-TTTCAAGATTTGG-AACC
* * *
11996 AAAAACACATTCCCTTCATTAGAATACATGACATTGATGCTTTGGTGTCGC-AGAAAAAG-TTTT
1 AAAAACGCATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCACAAG-AAAAGCTTTT
* * ** ** *
12059 TTTTTCATTAGTTTTTGATAGTGTCAAAGTTTGTATCTTAAATAAGACAAACATGAATACTAATA
65 CTTTCCACCA-TTTTTGATAGAATCAAAGTTTGTATCTTAAATAAGACAAACATGAATACTCATA
* ** * * * * **
12124 CCAATTGCCATTC----T--CA-TAAGCA-T-T-GAC-T--TC-T-T-AAAAGGATAAAAGATAT
129 CTAATCCCCATTCTTTTTAGGATTAGGCACTATAAACATAGTCTTCTCATAAGGATAAGTGATAT
* * * *
12173 TGGTGCTTTGGTTT-GCAAGAAAAGCATTTTTCCCACCAATTTTTGTAAAGTTTAAGTT-ATGCC
194 TGATGCTTTGGTTTCGCAAGAAAGGCATTTTTCCCACCAATTTTTGTAAAGTCTAAGTTCGTGCC
* * * *
12236 TCAAATGAGACAAACATTGATTCTAGTAATAATCTTCTTTCATTTTGTGACTT-GGCACTATAAA
259 TCAAATGAGACAAACATGGATTCTAGTAATGATCTTCTTTCATTTTATGA-TTAGGCACTAGAAA
* * * *
12300 CACATTCTCCTTATTAAGATAAATGATATTGACGATTTTCTTTTGCATGGAAATCTTCTT-TTTG
323 CACATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGGAAATCTT-TTCCTTG
* * *
12364 CCCTATTTTCCTTAAAATTAAATTTCA-CCCTTAAATAAGACAAGCATCGATTCTCGTAACAGTC
387 CCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCATAACAGTC
12428 TCCATTCTTTTCAAG-TTTGGGAACC
452 TCCATTCTTTTCAAGATTT-GGAACC
* * *
12453 GAAAA-GCCATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTCTCGCAAGAAAAGCTTTT
1 AAAAACG-CATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCACAAGAAAAGCTTTT
* * * * * * * *
12517 CTTTCCTCCATTTTT-AGTGGAATCAATGTTTGCCA-CTTAAATAAGCCAAATATGAATAGTCTT
65 CTTTCCACCATTTTTGA-TAGAATCAAAGTTTG-TATCTTAAATAAGACAAACATGAATACTCAT
* ** * * * *
12580 TCTAATCCCCATTCTTTTTCTGATTTAGGCACCATAAACATAGTAC-TATCATAAGTATAGGTGA
128 ACTAATCCCCATTCTTTTTAGGA-TTAGGCACTATAAACATAGT-CTTCTCATAAGGATAAGTGA
* * * *
12644 TATTGATGCTTTGGTTTCGCAAGAAAGAC-TTTCTTCCCACCAATTATCT-CAAAGTCTGAGTTC
191 TATTGATGCTTTGGTTTCGCAAGAAAGGCATTT-TTCCCACCAATT-TTTGTAAAGTCTAAGTTC
* * * * * *
12707 GTGACTCAAATGAGACAAACATAGATTCTAGTAATGAACTTCATGCATTTTGTGATTAGGCACTA
254 GTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCTTTCATTTTATGATTAGGCACTA
* *
12772 TAAACACGTTCTCCTCATTAGGATAAATGATATTGATGATTT
319 GAAACACATTCTCCTCATTAGGATAAATGATATTGATGATTT
12814 CCTATAAATA
Statistics
Matches: 3017, Mismatches: 547, Indels: 194
0.80 0.15 0.05
Matches are distributed among these distances:
456 5 0.00
457 167 0.06
458 160 0.05
459 31 0.01
461 2 0.00
462 2 0.00
463 1 0.00
464 1 0.00
465 7 0.00
466 1 0.00
467 1 0.00
468 8 0.00
469 2 0.00
470 1 0.00
471 190 0.06
472 266 0.09
473 359 0.12
474 570 0.19
475 837 0.28
476 405 0.13
477 1 0.00
ACGTcount: A:0.32, C:0.18, G:0.14, T:0.36
Consensus pattern (476 bp):
AAAAACGCATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCACAAGAAAAGCTTTTC
TTTCCACCATTTTTGATAGAATCAAAGTTTGTATCTTAAATAAGACAAACATGAATACTCATACT
AATCCCCATTCTTTTTAGGATTAGGCACTATAAACATAGTCTTCTCATAAGGATAAGTGATATTG
ATGCTTTGGTTTCGCAAGAAAGGCATTTTTCCCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTC
AAATGAGACAAACATGGATTCTAGTAATGATCTTCTTTCATTTTATGATTAGGCACTAGAAACAC
ATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGGAAATCTTTTCCTTGCCCT
ATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCATAACAGTCTCCA
TTCTTTTCAAGATTTGGAACC
Found at i:12819 original size:46 final size:46
Alignment explanation
Indices: 12769--12859 Score: 137
Period size: 46 Copynumber: 2.0 Consensus size: 46
12759 TGATTAGGCA
* *
12769 CTATAAACACGTTCTCCTCATTAGGATAAATGATATTGATGATTTC
1 CTATAAACACGTTCTCCTCATTAGGATAAACGATATTAATGATTTC
* * *
12815 CTATAAATACGTTTTCCTTATTAGGATAAACGATATTAATGATTT
1 CTATAAACACGTTCTCCTCATTAGGATAAACGATATTAATGATTT
12860 TTTTTTGCAA
Statistics
Matches: 40, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
46 40 1.00
ACGTcount: A:0.34, C:0.14, G:0.12, T:0.40
Consensus pattern (46 bp):
CTATAAACACGTTCTCCTCATTAGGATAAACGATATTAATGATTTC
Found at i:14678 original size:475 final size:474
Alignment explanation
Indices: 13688--15354 Score: 1605
Period size: 475 Copynumber: 3.5 Consensus size: 474
13678 TTTGCACCTC
* ** * * * * * *
13688 AAATAAGACAAACCTGAATGGTCATACTAATCGCTATTCTTTTCGGGACTAGGCACCATAAACAT
1 AAATAAGACAAACATGAATACTAATACCAATCCCCATTCTTTTC-AGATTAGGCACCATAAACAT
* * * * * *
13753 AGTCTTCTCATTAGGATACGCGATATTAATGTTTTGGCTT-GAAAAGAAAGGCATTTTTTCCCAC
65 AGTCTTCTCATAAGGATACACGATATTTATGCTTTGGTTTCG-CAAGAAA-GCA-TTTTTCCCAC
* * * *
13817 CAATTTTTGTATAGTTTAAGTTC-ATGCCTCAAACGAGACAAACAAT-GATTCTAGTAATGATCC
127 CAATTTTTGTAAAGTCTAAGTTCGATGCCTCAAATGAGACAAAC-ATGGATTCTAGTAATGATCT
* * * * *
13880 TCATTCATTTTGTGATTAGGTACTATAAACATATTCTCTTCATTAGGATAAATGATATTGATGTT
191 TCTTTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGATATTGATGAT
* * *
13945 TTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAATGTAT-ATCTCTTAAA
256 TTTCTTTTGCATGAAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGT-TCATCCCTTAAA
* *
14009 TAAGACAAGCATCAATTCTCATAACAGTCTCCATTC-CTCTCAAGATTGGGAACCATAAAACA-A
320 TAAGACAAGCATCGATTCTCATAATAGTCTCCATTCTCT-TCAAGATTGGGAACCA-AAAACACA
* * * * *
14072 -TCCCTTCATTCGGATACATGACATTGATGCTTTAGCGTCACATGAAAAA-CTTTTCTTTCCACC
383 TTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCA-GAAAAAGCTTTTCTTT-CACA
* * *
14135 GTTTTTGATAAAATCAAAGATTGTTTCTT
446 GTTTTTGATAGAATCAAAGTTTGTATCTT
* * * * *
14164 AAAGAAGACAAACATGAATAGTCATACTAATCCCCATTCTTTTCAGGATTAGGCATCATAAACAT
1 AAATAAGACAAACATGAATACTAATACCAATCCCCATTCTTTTCA-GATTAGGCACCATAAACAT
* * * * * **
14229 AGTCTTCCCAAAAGGATACACGGTATTTAAGCTTTGCTTTCGCAAGAAAGGGTTTCTTCCCACCA
65 AGTCTTCTCATAAGGATACACGATATTTATGCTTTGGTTTCGCAAGAAAGCATTT-TTCCCACCA
* * * *
14294 ATTTTTGTAAAGTCTAAGTTCGCT-CCTCAAATAAGCCAAACATGG-TTCTAGTAATGATATTCT
129 ATTTTTGTAAAGTCTAAGTTCGATGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCT
* * * * * *
14357 TTCATTTTATAATTAGGCACTAGAAACACATTCTCTTCATAAGAAT-AATCGATATTGATGATTT
194 TTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAAT-GATATTGATGATTT
* * * * *
14421 TCCTTTGCATGAAAATCTTTTCCTTGCCCTATTTTCCTTGAAATCGAAGTTCATCCCTTAAACAA
258 TCTTTTGCATGAAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAA
* * * *
14486 AACAAGCATCGATTCTCATAATAGTCTCCATTCTCTTTAAAATTGGCAACCAAAAACACATTCCC
323 GACAAGCATCGATTCTCATAATAGTCTCCATTCTCTTCAAGATTGGGAACCAAAAACACATTCCC
* *
14551 TTCATTAGAATACATGACATTGATGCTTTGGTGTCGCAGAAAAAGCTTTTCTTTCATTAGTTTTT
388 TTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAGAAAAAGCTTTTCTTTCA-CAGTTTTT
**
14616 GATAGTTTCAAAGTTTGTATCTT
452 GATAGAATCAAAGTTTGTATCTT
* ** *
14639 AAATAAGACAAACATTAATACTAATACCAATTGCCATTC---TC--A-TA---AGCAT-----T-
1 AAATAAGACAAACATGAATACTAATACCAATCCCCATTCTTTTCAGATTAGGCACCATAAACATA
* * * * * * *
14689 GACTTCTTAAAAGGATAAAAGATGTTGGA-GCTTTGGTTT-GCAAGAAAAGCATTTTTCCCACCA
66 GTCTTCTCATAAGGATACACGATATT-TATGCTTTGGTTTCGCAAG-AAAGCATTTTTCCCACCA
* * * *
14752 ATTTTTGTAAAGTTTAAGTT-TATGCCTCAAATGAGACAAACATTGATTCTAGTAATAATCTTCT
129 ATTTTTGTAAAGTCTAAGTTCGATGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCT
*
14816 TTCATTTTGTGACTT-GGCACTATAAACACATTCTCCTCATTAAGATAAATGATATTGATGATTT
194 TTCATTTTGTGA-TTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGATATTGATGATTT
* * * *
14880 TCTTTTGCATGGAAATCTTCTT-TTTGCCCTATTTTCCTTAAAATTAAATTTTAT-CCTTAAATA
258 TCTTTTGCATGAAAATCTT-TTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATA
** * * * * * **
14943 AGACAAGCATCGATTCTTGTAACAGCCTCCATTCTTTTCAAGTTTGGGAACCGAAAAGGCATTCC
322 AGACAAGCATCGATTCTCATAATAGTCTCCATTCTCTTCAAGATTGGGAACCAAAAACACATTCC
* *
15008 CTTCATTAGGATACATGACATTGATGCTTTGGTCTCGCAAGAAAAA-CTTTTCTTTCCTCCA-TT
387 CTTCATTAGGATACATGACATTGATGCTTTGGTGTCGC-AGAAAAAGCTTTTCTTT-C-ACAGTT
* * *
15071 TTTGATGGAATCAATGTTTGCCA-CTT
449 TTTGATAGAATCAAAGTTTG-TATCTT
* * ** *
15097 AAATAAGACAAATATGAATAGTCT-AT-CTAATCCCCATTCTTTTTTGATTTCGGCACCATAAAC
1 AAATAAGACAAACATGAATA--CTAATACCAATCCCCATTCTTTTCAGA-TTAGGCACCATAAAC
* * * * * * *
15160 ATAGTAC-TATCATAAGTATACGCGATATTGATGCTTTTGTTTTGCTAGAAAG-ACTTTCTTCCC
63 ATAGT-CTTCTCATAAGGATACACGATATTTATGCTTTGGTTTCGCAAGAAAGCA-TTT-TTCCC
* * * * * * * * *
15223 ACCAATTATCGCAAAGTTTGAGTTCG-TGACTCAAATGAGACAAACATAGATTCTAGTAATAAAC
125 ACCAATTTTTGTAAAGTCTAAGTTCGATGCCTCAAATGAGACAAACATGGATTCTAGTAATGATC
* * * * * *
15287 TTCATGCATTTTGTGATTAGGAACTATAAACACGTTCTTCTCATTAGGATAAATGATACTGATGA
190 TTCTTTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGATATTGATGA
15352 TTT
255 TTT
15355 CCTATAAATA
Statistics
Matches: 980, Mismatches: 163, Indels: 97
0.79 0.13 0.08
Matches are distributed among these distances:
457 1 0.00
458 205 0.21
459 156 0.16
460 11 0.01
461 1 0.00
463 1 0.00
465 5 0.01
468 6 0.01
469 1 0.00
472 2 0.00
473 14 0.01
474 212 0.22
475 271 0.28
476 93 0.09
477 1 0.00
ACGTcount: A:0.32, C:0.19, G:0.13, T:0.36
Consensus pattern (474 bp):
AAATAAGACAAACATGAATACTAATACCAATCCCCATTCTTTTCAGATTAGGCACCATAAACATA
GTCTTCTCATAAGGATACACGATATTTATGCTTTGGTTTCGCAAGAAAGCATTTTTCCCACCAAT
TTTTGTAAAGTCTAAGTTCGATGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCTTT
CATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGATATTGATGATTTTCT
TTTGCATGAAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGAC
AAGCATCGATTCTCATAATAGTCTCCATTCTCTTCAAGATTGGGAACCAAAAACACATTCCCTTC
ATTAGGATACATGACATTGATGCTTTGGTGTCGCAGAAAAAGCTTTTCTTTCACAGTTTTTGATA
GAATCAAAGTTTGTATCTT
Found at i:15360 original size:46 final size:46
Alignment explanation
Indices: 15310--15400 Score: 146
Period size: 46 Copynumber: 2.0 Consensus size: 46
15300 TGATTAGGAA
* *
15310 CTATAAACACGTTCTTCTCATTAGGATAAATGATACTGATGATTTC
1 CTATAAACACGTTCTCCTCATTAGGATAAATGATACTAATGATTTC
* *
15356 CTATAAATACGTTCTCCTCATTAGGATAAATGATATTAATGATTT
1 CTATAAACACGTTCTCCTCATTAGGATAAATGATACTAATGATTT
15401 TCTTTTGCAA
Statistics
Matches: 41, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
46 41 1.00
ACGTcount: A:0.34, C:0.15, G:0.12, T:0.38
Consensus pattern (46 bp):
CTATAAACACGTTCTCCTCATTAGGATAAATGATACTAATGATTTC
Found at i:17271 original size:476 final size:475
Alignment explanation
Indices: 15356--22434 Score: 5920
Period size: 475 Copynumber: 15.1 Consensus size: 475
15346 TGATGATTTC
* * * * *
15356 CTATAAATACGTTCTCCTCATTAGGATAAATGATATTAATGATTTTCTTTTGCAAGGAAATCTTT
1 CTATAAACACATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGAAAATCTTT
* * * * * *
15421 TCTTTTCCCTATTTTTCTTAAAACCAAAGTTCACCCCTTAAATAAGACAAGCATCAATTCTCGTA
66 TCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCATA
* ** * ** * * *
15486 ACAGTCTCCATTCTTTTCAATTTTGGGAACCGAAAATGCATTTCCTTCGTTAGGATACATGGCAT
131 ATAGTCTCCATTCTTTTCAAGATTGGGAACCAAAAACACATTCCCTTCATTAGGATACATGACAT
* * * *
15551 TGATGCTTTGGTGTCACAAGAAATGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGTTT
196 TGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCATTTTTGATAGAATCAAAGTTTGTCT
* * * *
15616 CTTAAATAAGACAAACAT--A-A--ATACTAATACCAATTC-----C-CATT---C-TCATAAAC
261 CTTAAATAAGACAAACATGAATATCATACTAATCCCCATTCTTTTTCATATTAGGCACCATAAAC
* * * * * *
15666 ATTGTCTTCTCATAAAGATAGAAGATATTGGTGCTTTGGTTTCGCAAGAAAGGCATTTTTCTCAC
326 ATAGTCTTCTCATAAGGATACACGATATTGGTGCTTTGGTTTCGCAAGAAAGACATTTTTCCCAC
* *
15731 CAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTGC
391 CAATTTTTGTAAAGTCTAAGTTCATGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTC
*
15796 TTTCATTTTATGACTT-GGCA
456 TTTCATTTTGTGA-TTAGGCA
* * * *
15816 CTTTAAACACATTCTCCTCATTAGGATAAATGATATTAATGATTTACTTTTGCATGGAAATCTTT
1 CTATAAACACATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGAAAATCTTT
* * * *
15881 TCTTTGCCGTATTTTTCTTAAAATCAAAGTTCATCCCTTAAATAAGGCAAGCATCGATTCTCGTA
66 TCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCATA
* * * * *
15946 ATAGTCAT-CGTTCTTTTCAAGATTGTGAACCAAAAACACATTCCCTTCAATAGGCTACGAAG-C
131 ATAGTC-TCCATTCTTTTCAAGATTGGGAACCAAAAACACATTCCCTTCATTAGGATAC-ATGAC
* * *
16009 ATTAATGCTTTGGTGTCACAAGAAAAGCTTTTCTTTCTACCATTTTTGATAGAATCAAAG-TTGT
194 ATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCATTTTTGATAGAATCAAAGTTTGT
* * * * * *
16073 ATCTTAAATAAGGCAAAC---AAGA--ATACTAATCCCTATTCTTTTT-AGGATTAGGCACGATA
259 CTCTTAAATAAGACAAACATGAATATCATACTAATCCCCATTCTTTTTCA-TATTAGGCACCATA
* *
16132 AACATAGTCTTCTCATAAGGATACACGATATTGGTGCTTTGTTTTCGCGAGAAA-AGCATTTTTC
323 AACATAGTCTTCTCATAAGGATACACGATATTGGTGCTTTGGTTTCGCAAGAAAGA-CATTTTTC
* ** *
16196 CCAACAATTTTTGTAAAGTCTAAGTTCGCGTCTCAAATGAGACAAACATGGATTCTAGTAATGAT
387 CCACCAATTTTTGTAAAGTCTAAGTTCATGCCTCAAATGAGACAAACATGGATTCTAGTAATGAT
* *
16261 CTTCTTTCATTTTATGATTTGGCA
452 CTTCTTTCATTTTGTGATTAGGCA
* ** * * ** * *
16285 GTGCAAACACATTCTGCTCATTAAGATAAATGATATTGATGATTTTCTTTTATAAGAAAATTTTT
1 CTATAAACACATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGAAAATCTTT
* * *
16350 TCTTTGCCCTATTTTCCTTAAAATCAAAGTTCTTCCCTTTAATAAGACAAGAATCGATTCTCATA
66 TCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCATA
* * * * * * *
16415 ACAGTCTCCATTCTTTTCAAGATAGGGAGCCAAAAACAGATTCCCCTCATTAGTATACATGACGT
131 ATAGTCTCCATTCTTTTCAAGATTGGGAACCAAAAACACATTCCCTTCATTAGGATACATGACAT
* ** * * * * *
16480 CGATGCTTTGGTGTCAAAAGAAAAGCTTTTCTTTCCACCACTTTTAACATAATCAAAGTTTATCT
196 TGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCATTTTTGATAGAATCAAAGTTTGTCT
* * * * *
16545 CTTAAATAAGCCAAACTTGAATACTCATA-TGAAT-CCCTTTCCTTTTCGAGATTAGGCACCATA
261 CTTAAATAAGACAAACATGAATA-TCATACT-AATCCCCATTCTTTTTC-ATATTAGGCACCATA
* * * * * * *
16608 AACAAAGTCTTCTTATAAGGATAAAAGATATTGGT-CTTTGGTTTCCCAAGAATTG--TTTTCTT
323 AACATAGTCTTCTCATAAGGATACACGATATTGGTGCTTTGGTTTCGCAAGAA-AGACATTT-TT
* * ** *
16670 CCCACCAATTTTTATAAAGTCTATGTTTGTGCCTCAAATAAGACAAACATGGATTCTAGTAATGA
386 CCCACCAATTTTTGTAAAGTCTAAGTTCATGCCTCAAATGAGACAAACATGGATTCTAGTAATGA
* * *
16735 TCTTCATAT-ATTTTATGATTAGGTA
451 TCTTC-TTTCATTTTGTGATTAGGCA
* *
16760 CTATAAACACGTTCTGCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCACT-AAAATCTT
1 CTATAAACACATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCA-TGAAAATCTT
* * * * *
16824 CTCTTTGCCCTATTCTCCTTAAAATTAAAGTTCACCCCTTAAATAAGGCAAGCATCGATTCTCAT
65 TTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCAT
* * ** * *
16889 AATAGTCCCCATTCTTTTCAAGTTTGGGAA-CAGAAAATGCAC-TTCATTTCATTAGGACACTTG
130 AATAGTCTCCATTCTTTTCAAGATTGGGAACCA-AAAA--CACATTCCCTTCATTAGGATACATG
* * *
16952 ACATTGATGGTTTGGTGTTGCAAGAAAAGC-TTTCATTCCACCATTTTTGATAGAATCAAAGTTT
192 ACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCATTTTTGATAGAATCAAAGTTT
* * * * ***
17016 GCCTCTTGAATAAGACAAACAAGAATAGTCTTACTAATCCTTTTTCTTTTTCATATTAGGCACCA
257 GTCTCTTAAATAAGACAAACATGAATA-TCATACTAATCCCCATTCTTTTTCATATTAGGCACCA
* * * * ** *
17081 TAAACATAGTATTCTAATAAGTATACATGATATTAATGCTTTGGTTTCGCAAGAAAGACTTTTTT
321 TAAACATAGTCTTCTCATAAGGATACACGATATTGGTGCTTTGGTTTCGCAAGAAAGACATTTTT
* * * *
17146 CTCACCAATTTTTGTAAAGTCTGAGTTCATGACTCAAATGAGACAAACATGGATTCTAATAATGA
386 CCCACCAATTTTTGTAAAGTCTAAGTTCATGCCTCAAATGAGACAAACATGGATTCTAGTAATGA
17211 TCTTCTTTCATTTTGTGATTAGGCA
451 TCTTCTTTCATTTTGTGATTAGGCA
* * *
17236 CTATAAACACATTCTCCTCCTTAGGATATATGATATGGATGATTTTCTTTTGCATGAAAATCTTT
1 CTATAAACACATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGAAAATCTTT
* * ** * * * * *
17301 TATTTGCCCTATTTTCCTTAAAATCAAAGTTTATTTCTCAAATAAGATAAACATCGATTCACGTA
66 TCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCATA
* * * ** * *
17366 ACAGTCTCCATTCCTCTCAAGATTGGGAACCAAAAGGACATTCCCTTCACTAGGATACAAGACAT
131 ATAGTCTCCATTCTTTTCAAGATTGGGAACCAAAAACACATTCCCTTCATTAGGATACATGACAT
* * * * * * * * ** *
17431 TGAAGCCTTGGCGTCGCATGCAAAGCTTTTCTTTCCACCGTTTTTGATAAAATCAAAGATCATTT
196 TGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCATTTTTGATAGAATCAAAGTTTGTCT
* * * * *
17496 CTTAAATAAGACAAACATGAATCATTATCCTAATCCCCATTGTTTTTTAATTATTAGGCATCATA
261 CTTAAATAAGACAAACATGAAT-ATCATACTAATCCCCATT-CTTTTTCA-TATTAGGCACCATA
* * * * * *** * *
17561 AACATATTATTCTCAAAAGCATACACAATATTTAAGCTTTGGCTTCACAAGAAAG-CATTTCTTC
323 AACATAGTCTTCTCATAAGGATACACGATATTGGTGCTTTGGTTTCGCAAGAAAGACATTT-TTC
* * * *
17625 CCACTAATTTTTGTAAAGTCTAAGTTTACT-CCTCAAATAAG-CAAAACATGGATTCTAGTACTG
387 CCACCAATTTTTGTAAAGTCTAAGTTCA-TGCCTCAAATGAGAC-AAACATGGATTCTAGTAATG
* *
17688 ATCTTCATTCTTTTTGTGATTAGGCA
450 ATCTTCTTTCATTTTGTGATTAGGCA
* * * * *
17714 CTATAAGCACATTCTCCTTATTAGAATAAACGATATTGATGATTTTCTTTTGCATGGAAATCTTT
1 CTATAAACACATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGAAAATCTTT
* * *
17779 TCTTTGCCCTATTTTCCTTAAAATCCAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTTATC
66 TCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCATA
* * * *
17844 ATAGTCTCCATTCTCTTCAAGATTGGCAAGCAAAAATCACATTCCATTCATTAGGATACATGACA
131 ATAGTCTCCATTCTTTTCAAGATTGGGAACCAAAAA-CACATTCCCTTCATTAGGATACATGACA
* * ** * *
17909 TTGATGCTTTGGGGTCGC-AGAAAAAGCTTTT-TTTTCAATAGTTTTTGATAGTATTAAAGTTTG
195 TTGATGCTTTGGTGTCGCAAG-AAAAGCTTTTCTTTCCACCA-TTTTTGATAGAATCAAAGTTTG
* * * * *
17972 TATCTTAAATAAGACAAACATCAATACCAATACCAATCGCCATTC----TCATA--A-G---CAT
258 TCTCTTAAATAAGACAAACATGAATATC-ATACTAATCCCCATTCTTTTTCATATTAGGCACCAT
* * * *
18027 -----T-TTCTTCTCATAAGGATAAAAGATATTCGTGCTTTGGTTTCGCAAGAAA-AGCATTTTT
322 AAACATAGTCTTCTCATAAGGATACACGATATTGGTGCTTTGGTTTCGCAAGAAAGA-CATTTTT
* * * *
18085 CCCACCAATTTTTGTAAAGTCTAAGTTTATGCCTCAAATGAGACAAACAAGGATTCTAGTATTAA
386 CCCACCAATTTTTGTAAAGTCTAAGTTCATGCCTCAAATGAGACAAACATGGATTCTAGTAATGA
*
18150 TCTTCTTTCATTTTGTGACTT-GGTA
451 TCTTCTTTCATTTTGTGA-TTAGGCA
* * * *
18175 CTATAAACACATTTTCCTCATTAGGATAAATGATATAGAAT-TTTTTCTTTTGCATGGAAATCTT
1 CTATAAACACATTCTCCTCATTAGGATAAATGATATTG-ATGATTTTCTTTTGCATGAAAATCTT
* * * *
18239 CTCTTTGCCCTATTTTCCTTAAAATTAAAGTTCACCCCTTAAATAAGACAAGGATCGATTCTCAT
65 TTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCAT
* * *** *
18304 AACAGTCTCCATTCTTTTCAAGTTTGGGAACCAAAAATGTATTCCCTTCATTAGGATACATCACA
130 AATAGTCTCCATTCTTTTCAAGATTGGGAACCAAAAACACATTCCCTTCATTAGGATACATGACA
* * * * * *
18369 TTGATGCTTTAGTGTCACAAGAAAAGCTTTTCTTTCCTCCATTTTTGATGGAATCAATGTTTGCC
195 TTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCATTTTTGATAGAATCAAAGTTTGTC
* * * * * *
18434 ACTTAAATAAAACAAAGATGAATAGTCTTACTAATCCCCATTC-TTTTC-TAGTTTACGCACCGT
260 TCTTAAATAAGACAAACATGAATA-TCATACTAATCCCCATTCTTTTTCATA--TTAGGCACCAT
* * * * * * * *
18497 GAACATAATATTATCATAAGTATACGCGATATTGGTGCTTTAGTTTTGCAAGAAAGAC-TTTCTT
322 AAACATAGTCTTCTCATAAGGATACACGATATTGGTGCTTTGGTTTCGCAAGAAAGACATTT-TT
* ** * * *
18561 CCCACCAATTATCATAAAGTCTGAGTTCATGACTCAAATGAGACAAATATGGATTCTAGTAATGA
386 CCCACCAATTTTTGTAAAGTCTAAGTTCATGCCTCAAATGAGACAAACATGGATTCTAGTAATGA
*
18626 TCTTCATTCATTTTGTGATTAGGCA
451 TCTTCTTTCATTTTGTGATTAGGCA
* * * * *
18651 CTATAAACACGTTCTCCTCATTAGGGTAAGTGATATTGATGATTTTTTTTTTGCACGAAAATCTT
1 CTATAAACACATTCTCCTCATTAGGATAAATGATATTGATGA-TTTTCTTTTGCATGAAAATCTT
* * * * *
18716 CTCTTTACCCTATTTTCCTTAAAATTAAAGTTCA-CTCCTTAAATAAGACAAGCATTGATTCTCG
65 TTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATC-CCTTAAATAAGACAAGCATCGATTCTCA
* * * * *
18780 TAATAGTCTCCATTCCTCTCAAGATTGGGAACCACAAAGACATTCTCTTCATTAGGATACATGAC
129 TAATAGTCTCCATTCTTTTCAAGATTGGGAACCAAAAACACATTCCCTTCATTAGGATACATGAC
* *
18845 ATTGATGCTTTGGTGTCGCAAGAAAACCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGT
194 ATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCATTTTTGATAGAATCAAAGTTTGT
* *
18910 CTCTTAAATAA-ACAAACATGAATAGTCATACTAATCCCCATT-TTTTTCAAGATTAGGCACCAC
259 CTCTTAAATAAGACAAACATGAATA-TCATACTAATCCCCATTCTTTTTC-ATATTAGGCACCAT
** ** * ***
18973 AAACATAGTCTTCTC-GGAGAGATACACGATATTTATGCTTTGGATTCGCAAG-AAGGGGTTTCT
322 AAACATAGTCTTCTCATAAG-GATACACGATATTGGTGCTTTGGTTTCGCAAGAAAGACATTT-T
* * * * *** * * *
19036 TCCCACAAATTATTGTAAAATGTAAGTTCGCACCTCAAATGAGCCAAACATGGATTCCAGTAAGG
385 TCCCACCAATTTTTGTAAAGTCTAAGTTCATGCCTCAAATGAGACAAACATGGATTCTAGTAATG
* *
19101 ATCTTCATTCTTTTTGTGATTAGGCA
450 ATCTTCTTTCATTTTGTGATTAGGCA
* * * * ** * * *
19127 CTACAAGCACATTCTCCACATTAGAATAAACAATATTTATAATTTTCTTTTGCATGAAAACCTTT
1 CTATAAACACATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGAAAATCTTT
* * * *
19192 TCTTTGCCCTAATTTCCTTAAAATCAAAGTTCATCTCTTAAATAAGACAGGCATCGATTCTTATA
66 TCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCATA
* * * * * * *
19257 ACAATCTCCATTCTCTTCAAGATTGGCAACCACAAACACATTACCTTCATTAGGATACAAGACAT
131 ATAGTCTCCATTCTTTTCAAGATTGGGAACCAAAAACACATTCCCTTCATTAGGATACATGACAT
* * * * * *
19322 TGATGCTTTGGTGTCGC-AGAAAAAGCTTTTTTTTTTCAATCGTTTTTGAAAGTATCAAAGTTTG
196 TGATGCTTTGGTGTCGCAAG-AAAAGC--TTTTCTTTCCACCATTTTTGATAGAATCAAAGTTTG
* * * * * *
19386 TATCTTAAAAAAGACAAAGATG---A--AT-CTAATACCAATTC-----C-TATT---C-TCATA
258 TCTCTTAAATAAGACAAACATGAATATCATACTAATCCCCATTCTTTTTCATATTAGGCACCATA
* * * * * * * *
19435 AACATTGTCCTCCCATAAGGATAAAAGATATTGGTGTTTTGGTTTCGTAATAAA-AGCATTTTTC
323 AACATAGTCTTCTCATAAGGATACACGATATTGGTGCTTTGGTTTCGCAAGAAAGA-CATTTTTC
* ** * * * *
19499 CCACCAACTTTTGTAAAGTCTAAGTTTGTGTCTCAAATAAGACAAACATAGATTCTAGCAATGAT
387 CCACCAATTTTTGTAAAGTCTAAGTTCATGCCTCAAATGAGACAAACATGGATTCTAGTAATGAT
* ** *
19564 TTTCTTTCATTTTGTGGCGT-GGAA
452 CTTCTTTCATTTTGT-GATTAGGCA
* *
19588 CTATAAACACATTCTCCTCATTGGGATAAATGATATTGATGATTTTCTTTTGCATGGAAATCTTT
1 CTATAAACACATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGAAAATCTTT
* *
19653 TCTTTGCCCTATTTTTCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCACCGATTCTCATA
66 TCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCATA
* ** * * * *
19718 ACCA-TCT--ATGT-TTCCTTCAAGATTATGAACCAAAAACATATTCCCTTTAATAGGATACGTG
131 A-TAGTCTCCAT-TCTT--TTCAAGATTGGGAACCAAAAACACATTCCCTTCATTAGGATACATG
* * * * * * *
19779 GCATTAATGCTTTCGTGTCACAGGAAAAGCTTTTCTTTCCATCGTTTTTGATAGAATCAAAGTTT
192 ACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCATTTTTGATAGAATCAAAGTTT
* * * * * * * *
19844 GTATCTTAAATAAGGCAAACAAGAATACTAATACTAATCCCTATT-TTTTGCAGGATTAGGCACT
257 GTCTCTTAAATAAGACAAACATGAATA-TCATACTAATCCCCATTCTTTTTCA-TATTAGGCACC
* * * *
19908 ATAAACATAATCTTCTCATAAGGATACATGATCTTGGTGCTTTGGTTTCGCAAGAAAGGCATTTT
320 ATAAACATAGTCTTCTCATAAGGATACACGATATTGGTGCTTTGGTTTCGCAAGAAAGACATTTT
* * * *
19973 TCCCAACGATTTTTGTAAAGTCTAAGTTCATGCCTTAAATGAGACAAACATGAATTCTAGTAATG
385 TCCCACCAATTTTTGTAAAGTCTAAGTTCATGCCTCAAATGAGACAAACATGGATTCTAGTAATG
*
20038 ATCTTCTTTCATTTTATGATTAGGCA
450 ATCTTCTTTCATTTTGTGATTAGGCA
* *
20064 GTATAAACACATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGAAAATTTTT
1 CTATAAACACATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGAAAATCTTT
** * * *
20129 TCTTTGCCCTATTTTCCCCAAAATTAAAGTTCAT-CCTTAAATAAGAAAAGCATCAATTCTCATA
66 TCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCATA
* * * * ** *
20193 ATAGTTTCCACTCTCTTCAAGATTGGCAACCAAAAACACAAGCCCTTCTTTAGGATACATGACAT
131 ATAGTCTCCATTCTTTTCAAGATTGGGAACCAAAAACACATTCCCTTCATTAGGATACATGACAT
* * ** * * *
20258 TAAAGCTTTGGCATCGCAAAAAAAG-TTTT-TTTCCATCGTTTTTGATAGAATCAAAGTTTGTCT
196 TGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCATTTTTGATAGAATCAAAGTTTGTCT
* * ** ** * * **
20321 CTTAAATAAGACAAACATGAATACTAATACCT-ATCCCCAATCTCATAAACATTA-TCTTC-T--
261 CTTAAATAAGACAAACATGAATA-TCATA-CTAATCCCCATTCTTTTTCATATTAGGCACCATAA
* ** ** * * ** * ** * * *
20381 -CATAGATATTGGCGATTTGGTTTCATAAGA-T-AAGCATT--TTTC-C--CACA-A-ATTTTT-
324 ACATAG-TCTTCTC-ATAAGGATACACGATATTGGTGCTTTGGTTTCGCAAGAAAGACATTTTTC
** * * ** * ** * ** *
20435 GTA--AAGTCTATGT-TCGTGCCTCAA-AT-GGGACT-AACATTGATTCTAGTA-AT-GA-TCT-
387 CCACCAA-TTTTTGTAAAGT--CT-AAGTTCATGCCTCAA-A-TGAGAC-A-AACATGGATTCTA
* * * * * ** * **
20490 -TCAT--TCTTTTTGTGACTTGGCACAATAAACA
444 GTAATGATCTTCTT-TCATTTTG-TGATTAGGCA
* * * * **** * * * * ** *
20521 C-AT--TCTCCTTATTAGAATAAATGATATTGATGATTTTTTCTGCATGGA-AATCTTTT-CTTT
1 CTATAAACACATTCTCCTCAT-TAGGATA--AATGA---TAT-TG-AT-GATTTTCTTTTGC-AT
*** * *** ** * ** *
20581 GCCCTAT-TTTCCTTAAAATCAAAGTTCTTCCCTT-AAAT--AAG-ACA-AGC----AT-CG--A
56 G-AAAATCTTTTCTT--TGCCCTA-TT-TT-CCTTAAAATCAAAGTTCATCCCTTAAATAAGACA
** * * * * * ** *
20633 TTC-TC-A--C-AATAG---TCTCCATTCTCTTCAAGATTGGCAAGCAAAAACACATTCTGTTTA
115 AGCATCGATTCTCATAATAGTCTCCATTCTTTTCAAGATTGGGAACCAAAAACACATTCCCTTCA
* * **
20690 TTAGGATACATGACATTGATGCTTTGGTGCCGC-AGAAAAAGCTTTT-TTTTCAATAGTTTTTGA
180 TTAGGATACATGACATTGATGCTTTGGTGTCGCAAG-AAAAGCTTTTCTTTCCACCA-TTTTTGA
* * * * * * *
20753 TAGTATCAAAGTTTGTATCTTAAATAAGTCAAACATCAATACCAATACCAATCGCCATTC----T
243 TAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATATC-ATACTAATCCCCATTCTTTTT
* * * * * *
20814 CATA--A-G---CAT-----T-TTCTTCTCATAAGGATAAAAGATATTTGAGCTTTGGTTTCACA
307 CATATTAGGCACCATAAACATAGTCTTCTCATAAGGATACACGATATTGGTGCTTTGGTTTCGCA
**
20867 AGAAA-AGCATTTTTCCCACCAATTTTTGTAAAGTCTAAGTTTGTGCCTCAAATGAGACAAACAT
372 AGAAAGA-CATTTTTCCCACCAATTTTTGTAAAGTCTAAGTTCATGCCTCAAATGAGACAAACAT
* * *
20931 GGATTCTAGTAATAATCTTCTTTCATTTTGTAACTT-GGTA
436 GGATTCTAGTAATGATCTTCTTTCATTTTGTGA-TTAGGCA
* *
20971 CTATAAACACATTCTCCTCACTAGGATAAATGATATTGATGATTTTCTTTTGCCATGGAAATCTT
1 CTATAAACACATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTG-CATGAAAATCTT
* * * * * * *
21036 CTCTTTGTCCTATTTTCCTTAAAATTAAAGTTCACCCCTTAAATAAGACAAGGATTGATTCTCGT
65 TTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCAT
* * *** *
21101 AACAGTCTCCATTCTTTTCAAGTTTGGGAACCAAAAATGTATTCCCTTCATTAGGATACATCACA
130 AATAGTCTCCATTCTTTTCAAGATTGGGAACCAAAAACACATTCCCTTCATTAGGATACATGACA
* * * *
21166 TTGATGCTTTAGTGTCGCAAGAAAAGCTTTTCTTTCCTCCATTTTT-TTAGGGAATCAATGTTTG
195 TTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCATTTTTGATA--GAATCAAAGTTTG
* * *
21230 CCACTTAAATAAGACAAACATGAATAGTCTTACTAATCCCCATT-TTTTTC-TACTTTAGGCACC
258 TCTCTTAAATAAGACAAACATGAATA-TCATACTAATCCCCATTCTTTTTCATA--TTAGGCACC
* * * * * * * *
21293 ATGAACATAGTATTATCATAAGTATACGCGATATTGATGCTTTAGTTTTGCAAGAAAGAC-TTTC
320 ATAAACATAGTCTTCTCATAAGGATACACGATATTGGTGCTTTGGTTTCGCAAGAAAGACATTT-
* * ** * *
21357 TTCCCACTAATTATCATAAAGTCTGAGTTCATGACTCAAATGAGACAAACATGGATTCTAGTAAT
384 TTCCCACCAATTTTTGTAAAGTCTAAGTTCATGCCTCAAATGAGACAAACATGGATTCTAGTAAT
* *
21422 GACCTTCATTCATTTTGTGATTAGGCA
449 GATCTTCTTTCATTTTGTGATTAGGCA
* * * *
21449 CTATAAACACATTCTCCTCATTAGGATAAATGATAATGATGATTTTTTTTTGCA-CAGAGATCTT
1 CTATAAACACATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGA-AAATCTT
* * * *
21513 CTCTTTGCCCTATTTTCCTTAAAATTAAAGTTCA-CTCCTTAAATAAGACAAGCATTGATTCTCG
65 TTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATC-CCTTAAATAAGACAAGCATCGATTCTCA
* * * * ** *
21577 TAATAGTCTCCATTCCTCTCAAGATTGGGAACCACAAAGACATTCTGTTCATTAGGATACATGAT
129 TAATAGTCTCCATTCTTTTCAAGATTGGGAACCAAAAACACATTCCCTTCATTAGGATACATGAC
* * * *
21642 ATTGATGCTTTGGTGTCGCAAGAAAACCTTTTCTTTCAACCGTTTTTGATAGAATCAAAGGTTGT
194 ATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCATTTTTGATAGAATCAAAGTTTGT
* * * *
21707 CTCTTAAATAA-ACAAACATGAATAGTCATACTAATCCCCACT-TTTTTCGAGATTAAGCGCCAT
259 CTCTTAAATAAGACAAACATGAATA-TCATACTAATCCCCATTCTTTTTC-ATATTAGGCACCAT
** * * ** * ***
21770 AAACATAGTCTTCTCGGAAAGATACATGATATTTATGCTTTGGTTTCACAAG-AAGGGGTTTCTT
322 AAACATAGTCTTCTCATAAGGATACACGATATTGGTGCTTTGGTTTCGCAAGAAAGACATTT-TT
* * * * * ** * *
21834 CCCACAAATTCTTCTAAAATGTAAGTTCACACCTCAAATGAGCCAAACATGGATTCTAGTAAGGA
386 CCCACCAATTTTTGTAAAGTCTAAGTTCATGCCTCAAATGAGACAAACATGGATTCTAGTAATGA
* * * *
21899 TCTTCATTCTTTTTGAGATTGGGCA
451 TCTTCTTTCATTTTGTGATTAGGCA
* * * * *
21924 CTGTAAGCACATTCT-CTACATTAGAATAAACGATATTGATGATTTTCTTTTGCATGAAAACCTT
1 CTATAAACACATTCTCCT-CATTAGGATAAATGATATTGATGATTTTCTTTTGCATGAAAATCTT
* * * *
21988 TTCTTTGCCCTAATTTCCTTAAAATCAAACTTCATCCCTTAAATAAGACAAGCATTGTTTCTCAT
65 TTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCAT
* * * * * *
22053 AATAATCTCCATTCTCTTCAAGATTGGCAAACAAAAACACATTACCTTCATTAGGATACAAGACA
130 AATAGTCTCCATTCTTTTCAAGATTGGGAACCAAAAACACATTCCCTTCATTAGGATACATGACA
* * * * * *
22118 TTGATGCTTTGGTGT--CATAGAAAAAGCTTTTCTTTCAATCGTTTTTTATATGTATCAAAGTTC
195 TTGATGCTTTGGTGTCGCA-AG-AAAAGCTTTTCTTTCCACCATTTTTGATA-GAATCAAAGTTT
* * * * * *
22181 GTATCTTAAAAAAGACAAAGATGAATACTAATACCAATTCCCATTC----TCATA--A---A-CA
257 GTCTCTTAAATAAGACAAACATGAATA-TCATACTAATCCCCATTCTTTTTCATATTAGGCACCA
* * * * * ** *
22236 T-----T-GTCCTCCCATAAGGATAAAAGATATTGGTGTTTTGGTTTCATAATAAA-AGCATTTT
321 TAAACATAGTCTTCTCATAAGGATACACGATATTGGTGCTTTGGTTTCGCAAGAAAGA-CATTTT
* ** *
22294 TCCCACCAACTTTTGTAAAGTCTAAGTTTGTGTCC-CAAATAAGACAAACATGGATTCTAGTAAT
385 TCCCACCAATTTTTGTAAAGTCTAAGTTCATG-CCTCAAATGAGACAAACATGGATTCTAGTAAT
* * *
22358 GATTTTCTTTCATTTTGTGACGT-GGCT
449 GATCTTCTTTCATTTTGTGA-TTAGGCA
* *
22385 CTATAAACACATTCTCCTTATCAGGATAAATGATATTGATGATTTTCTTT
1 CTATAAACACATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTT
22435 GTCAATCTTT
Statistics
Matches: 5284, Mismatches: 1069, Indels: 531
0.77 0.16 0.08
Matches are distributed among these distances:
437 8 0.00
438 5 0.00
439 5 0.00
440 1 0.00
441 9 0.00
442 8 0.00
443 2 0.00
444 12 0.00
445 13 0.00
446 23 0.00
447 14 0.00
448 82 0.02
449 16 0.00
450 67 0.01
451 12 0.00
452 12 0.00
453 7 0.00
454 9 0.00
455 14 0.00
456 8 0.00
457 13 0.00
458 9 0.00
459 102 0.02
460 334 0.06
461 787 0.15
462 106 0.02
463 12 0.00
464 7 0.00
465 13 0.00
466 21 0.00
467 10 0.00
468 15 0.00
469 355 0.07
470 32 0.01
471 13 0.00
472 9 0.00
473 80 0.02
474 30 0.01
475 1001 0.19
476 994 0.19
477 459 0.09
478 454 0.09
479 101 0.02
ACGTcount: A:0.32, C:0.19, G:0.13, T:0.36
Consensus pattern (475 bp):
CTATAAACACATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGAAAATCTTT
TCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCATA
ATAGTCTCCATTCTTTTCAAGATTGGGAACCAAAAACACATTCCCTTCATTAGGATACATGACAT
TGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCATTTTTGATAGAATCAAAGTTTGTCT
CTTAAATAAGACAAACATGAATATCATACTAATCCCCATTCTTTTTCATATTAGGCACCATAAAC
ATAGTCTTCTCATAAGGATACACGATATTGGTGCTTTGGTTTCGCAAGAAAGACATTTTTCCCAC
CAATTTTTGTAAAGTCTAAGTTCATGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTC
TTTCATTTTGTGATTAGGCA
Found at i:25433 original size:476 final size:475
Alignment explanation
Indices: 24450--26833 Score: 2503
Period size: 476 Copynumber: 5.0 Consensus size: 475
24440 GATATTGGCA
* * * * *
24450 ATTTGGTTTCATAAGATAA-GCATTTTTGCCACAAATTTTTGTAAAGTCTAAATTCGTGCCTCAA
1 ATTTGGTTTCACAAGA-AAGGTATTTTTCCCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAA
* * * * *
24514 ATGAGACAAACATGGATTCTAGTAATGATCTTTTTTCAATTTGTGATTTGGCACAATAAACACAA
65 ATGAGACAAACATGGATTCTAGTAATGATCTTTATTCATTTTGTGATTAGGCACTATAAACACAT
* ** * **
24579 TATCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGGAAATCTTCTCACTGCCCTAT
130 TCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATTAAAATCTTTTCTTTGCCCTAT
* * * * * * * *
24644 TTTTCTTAAAATCAAAGTTCATCCTTTAAATAAGATAAGCGTCAATGC-TTGTAATTGTCTCCAT
195 TTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTTTTTAA-AGTCTCCAT
* * * * * *
24708 TATTTTCAGGATTAGGAACCAAAAACACATTCCCTTCCTTAGGATACATGACATTGATGCTTTTG
259 TCTTTTCAAGATTGGGAACCAAAAA-AGATTCCCTTCATTAGGATACATGACATTGATGCTTTGG
* ** * *
24773 TGTCGCAAGAAAAGCTTTTCCGTCTACCTTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGA
323 TGTCGCAAAAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGA
* * * * * *
24838 CAAACATGAATACTTATACTAATCCTCATTCTTTTTGGGACTAGGCACCATAAGCATATTCTTCT
388 CAAACATGAATACTCATACTAATCCCCATTCTTTTTAGGATTAGGCACCATAAACATAGTCTTCT
* *** *
24903 CATTAAGATATGTGATATTCAT-
453 CATTAGGATACACGATATTGATG
* * * * * *
24925 ATTTTGTTTTCGA-AAGAAAGGCATTTTTCCCACCAATTTTCGTAAAGGCTAAGTTCATGCCTCG
1 A-TTTGGTTTC-ACAAGAAAGGTATTTTTCCCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCA
* * **
24989 AACGAGACAAACATGGATTCTAGTAATGATCTTTATTCTTTTTGCAATTAGGCACTATAAACACA
64 AATGAGACAAACATGGATTCTAGTAATGATCTTTATTCATTTTGTGATTAGGCACTATAAACACA
* *
25054 TTCTCCTCATATAAGGATAAATGATCTTGATGA-TTT-TTTTGCATTAAAATCTTTTCTTTGCCT
129 TTCTCCTCAT-T-AGGATAAATGATATTGATGATTTTCTTTTGCATTAAAATCTTTTCTTTGCCC
* *
25117 TATTTTCCTTAAAATCAAAGTTCATCCCTTAAAATAAGACAAGTATCGATCCTTTTTAAAGTCTC
192 TATTTTCCTTAAAATCAAAGTTCATCCCTT-AAATAAGACAAGCATCGATTCTTTTTAAAGTCTC
* * * * * *
25182 CATTATTTTCAAGATTGGGAACCTAAAATAGTTTTCCTTCTTTAGGATACATGACATTGATACTT
256 CATTCTTTTCAAGATTGGGAACC-AAAAAAGATTCCCTTCATTAGGATACATGACATTGATGCTT
* * * * *
25247 TGGTATCGTAATAAAAGCCTTTT-TTTCCACCGTTTTTGGTAGAATTAAAGTTTGTCTCTTAAAT
320 TGGTGTCGCAAAAAAAG-CTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAAT
* *
25311 AAAACAAACATGAATACTCATACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACATAGT-
384 AAGACAAACATGAATACTCATACTAATCCCCATTCTTTTTAGGATTAGGCACCATAAACATAGTC
* *
25375 TTCTCATTAGGATACGCAATATTGATG
449 TTCTCATTAGGATACACGATATTGATG
* * * *
25402 TTTTGGTTTCATAAGAAAGGTATTTTTCCCACTAATTTTTGCAAAGTCTAAGTTCGTGCCTCAAA
1 ATTTGGTTTCACAAGAAAGGTATTTTTCCCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAA
* * *
25467 GGAGACAAAGATGGATTCTAATAATGATCTTTATTCATTTTGTGATTAGGCACTATAAACACATT
66 TGAGACAAACATGGATTCTAGTAATGATCTTTATTCATTTTGTGATTAGGCACTATAAACACATT
* * * *
25532 CTCCTCATAAGGATAAATAAGATGGATGATTTTCTTTTGCA-TAGAAATCTTTTCTTTGCCCTA-
131 CTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATTA-AAATCTTTTCTTTGCCCTAT
* * ** *
25595 TTTCTCTTAAAATGAAAGTTCATCCCTTAAATAAGACAACCATCGATTCTCGTTATAGTCTCCAT
195 TTTC-CTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTTTTTAAAGTCTCCAT
* * * * * ** * * *
25660 TCTTTTCAAGATTGGCAACAAAAAACACATTCCTTTCATTCGGATACATGATGTTGATACCTTAG
259 TCTTTTCAAGATTGGGAACCAAAAA-AGATTCCCTTCATTAGGATACATGACATTGATGCTTTGG
** *
25725 TGAT-GCAAAAAAAGCTTTTCTTTCCACTATTTTGGATAGAATCAAAGTTTGTCTCTTAAATAAG
323 TG-TCGCAAAAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAG
* * * *
25789 ATAAAGATGAATACTCATACTAATCCTCATTCTTTTTAGGAATAGGCACCATAAACATAGTCTTC
387 ACAAACATGAATACTCATACTAATCCCCATTCTTTTTAGGATTAGGCACCATAAACATAGTCTTC
25854 TCATTAGGATACACGATATTGATG
452 TCATTAGGATACACGATATTGATG
* * * ** * **
25878 ATCTAGTTTCACAAGAAAGGCT-TTCTTCCTGCCAATTTTTGTAAAGTATAAGTTCAAGCCTCAA
1 ATTTGGTTTCACAAGAAAGG-TATTTTTCCCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAA
* * * * * * *
25942 GA-GAGACAAACATGGATTCTAGTAATGACCTACT-TTCTTTTTATGATTAGGCATTATAAATAA
65 -ATGAGACAAACATGGATTCTAGTAATGATCT-TTATTCATTTTGTGATTAGGCACTATAAACAC
* * * * * * *
26005 ATTCTCCTCATTCGAAAAAATGATATTAACGACTTT-TTTTGCA-TAGAAATCCTTTT-TTGGCC
128 ATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATTA-AAAT-CTTTTCTTTGCC
* * * * ** *
26067 CTATTTTCCTTAAAA-CTAAAATTCA-CCACTTAACTAAAACAAGCATTGATTCTCGTTACAGTC
191 CTATTTTCCTTAAAATC-AAAGTTCATCC-CTTAAATAAGACAAGCATCGATTCTTTTTAAAGTC
* * * * *
26130 TCTAGTCTTTTCAAGTTTGGGAACCGAAAACGCATTCCCTTCATTAGGATACATGACATTGATGC
254 TCCATTCTTTTCAAGATTGGGAACCAAAAAAG-ATTCCCTTCATTAGGATACATGACATTGATGC
* * **
26195 TTTGGTGTTGCAAAAAAAGCTTTTCTTTCCATCGTTTTCAATAGAATCAAAGTTTGTCTCTTAAA
318 TTTGGTGTCGCAAAAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAA
* *
26260 TAAGACAAACATGCATAGC-CATACTAATCCCCATTCTTTTTAGGATTAAGG-GCCAT-AACATA
383 TAAGACAAACATGAATA-CTCATACTAATCCCCATTCTTTTTAGGATT-AGGCACCATAAACATA
* **
26322 GTCTTCCCAAAAGGATACACGATATTGATG
446 GTCTTCTCATTAGGATACACGATATTGATG
* * *
26352 ATTTGGTTT-AGCAAGAAAGGCT-TTCTTCCCACCAATTTTTGTAAAGTTTAGGTTCGTGCCTCA
1 ATTTGGTTTCA-CAAGAAAGG-TATTTTTCCCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCA
* * * * * *
26415 AATGAGAAAAATATGGATTCTAATAGTGATATTCATTCATTTTGTGATTAGGCACTATAAACACA
64 AATGAGACAAACATGGATTCTAGTAATGATCTTTATTCATTTTGTGATTAGGCACTATAAACACA
* * * *
26480 TTCTCCTCTTTAGGATAAATGATATTGATGATTTTCTTTTGCCTGAAAAATCTTTTC-TTGTTCC
129 TTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCAT-TAAAATCTTTTCTTTG-CCC
* * * *
26544 TATTTTACTTAAAATTAAAGGTT-ACCCCTTAAATAAGACAAG---C-ATTC-TTGTAATAGTCT
192 TATTTTCCTTAAAATCAAA-GTTCATCCCTTAAATAAGACAAGCATCGATTCTTTTTAA-AGTCT
* * * * *
26603 CCATTCTTTTCAGGCTTGGGAACTAAAAATGCATTCCCTTCAATT-GAATACATGACATTGATGC
255 CCATTCTTTTCAAGATTGGGAACCAAAAAAG-ATTCCCTTC-ATTAGGATACATGACATTGATGC
* * * * ** * ** *
26667 TTTGGTGTCCCAAGAAAAGCTTTTCTTTCAACCATTTTCAATAGAATCAAAATTTACCTATTAAA
318 TTTGGTGTCGCAAAAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAA
* * * *
26732 TAGGACAAACATGAATAGTCATACTAATCCCCATTC-TTTTCGAAATTAGGCACCATAAACATAG
383 TAAGACAAACATGAATACTCATACTAATCCCCATTCTTTTTAG-GATTAGGCACCATAAACATAG
* * * **
26796 TATTCTCATAAGTATACATAATATTGATG
447 TCTTCTCATTAGGATACACGATATTGATG
*
26825 CTTTGGTTT
1 ATTTGGTTT
26834 TGGAAGAAAG
Statistics
Matches: 1598, Mismatches: 264, Indels: 96
0.82 0.13 0.05
Matches are distributed among these distances:
471 10 0.01
472 155 0.10
473 43 0.03
474 191 0.12
475 423 0.26
476 553 0.35
477 190 0.12
478 33 0.02
ACGTcount: A:0.32, C:0.18, G:0.14, T:0.36
Consensus pattern (475 bp):
ATTTGGTTTCACAAGAAAGGTATTTTTCCCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAA
TGAGACAAACATGGATTCTAGTAATGATCTTTATTCATTTTGTGATTAGGCACTATAAACACATT
CTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATTAAAATCTTTTCTTTGCCCTATT
TTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTTTTTAAAGTCTCCATTC
TTTTCAAGATTGGGAACCAAAAAAGATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGT
CGCAAAAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAA
ACATGAATACTCATACTAATCCCCATTCTTTTTAGGATTAGGCACCATAAACATAGTCTTCTCAT
TAGGATACACGATATTGATG
Found at i:28496 original size:33 final size:32
Alignment explanation
Indices: 28454--28521 Score: 100
Period size: 33 Copynumber: 2.1 Consensus size: 32
28444 CGTTACAAGC
* *
28454 CAATGTATCGATACATTTTGGGATGTATTGATA
1 CAATGTATCGATACATATTGGG-TGTATCGATA
*
28487 CAATGTATCGATACATATTGTGTGTATCGATA
1 CAATGTATCGATACATATTGGGTGTATCGATA
28519 CAA
1 CAA
28522 ACAGTTATGG
Statistics
Matches: 32, Mismatches: 3, Indels: 1
0.89 0.08 0.03
Matches are distributed among these distances:
32 12 0.38
33 20 0.62
ACGTcount: A:0.32, C:0.12, G:0.19, T:0.37
Consensus pattern (32 bp):
CAATGTATCGATACATATTGGGTGTATCGATA
Found at i:28620 original size:13 final size:13
Alignment explanation
Indices: 28602--28626 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
28592 AAATTTGGTC
28602 ATGTATCGATACA
1 ATGTATCGATACA
28615 ATGTATCGATAC
1 ATGTATCGATAC
28627 TGTGCATTAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:33198 original size:15 final size:15
Alignment explanation
Indices: 33178--33208 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
33168 ATTTCGTTTG
*
33178 GAGCTTCTTCATTTT
1 GAGCTTCCTCATTTT
33193 GAGCTTCCTCATTTT
1 GAGCTTCCTCATTTT
33208 G
1 G
33209 GACATTTTTA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.13, C:0.23, G:0.16, T:0.48
Consensus pattern (15 bp):
GAGCTTCCTCATTTT
Found at i:37290 original size:13 final size:13
Alignment explanation
Indices: 37272--37297 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
37262 CAATTTTTTG
37272 TGTATCGATACAT
1 TGTATCGATACAT
37285 TGTATCGATACAT
1 TGTATCGATACAT
37298 ACTTGCTGTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:40529 original size:475 final size:473
Alignment explanation
Indices: 39253--43034 Score: 4465
Period size: 475 Copynumber: 8.0 Consensus size: 473
39243 ATCAGTGCTA
* * * * *
39253 TGGTTTCACAAGAAAGGATTTTTTCACACCAATTTTTGTAAAGTCTAAGTTTGTGCCTCAAATGA
1 TGGTTTCGCAAGAAAGGCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTTTATGCCTCAAATGA
* * **
39318 GACAAACATAGATTCTAGTAATGATCTCCATTCATTTTGTGATTAGGCACTATAAACACATTCTC
66 GACAAATATGGATTCTAGTAATGATCTTTATTCATTTTGTGATTAGGCACTATAAACACATTCTC
* * *
39383 CTCATTTA-GATAAATGATATTGATGATTTCCTTTTGCATGAAAATCTTTTCTTTGCACTATTTT
131 CTCA-TTAGGATAAATGATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTT
* ** * * * *
39447 CTTTAAAGCCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGTAACAGTTTTCC-TTAT
195 CCTTAAAATCAAAATTCATCTCTTAAATAAGACAAGCATCGATTCTCATAACAG-TCTCCATTAT
* * * *
39511 TTTCAGGATTGAGAACCAAAAACACATTCCCTTCAAT-AGAATACATGACATTGATGCTTTGATG
259 TTT-AGGATTG-GAACCTAAAACACATTCCCTT-ATTAAGGATACATGACATTGATGCTTTGGTG
* * * *
39575 TCGCAAGAAAAGCTTCT-TTCCACCTTTTTTGATAGAATCAAAGTTTGTC-ACTTAAATAAGAC-
321 TCGCAAGAAAAGCTTTTCTTCCACCGTTTTTGATAGAATCAAAGTTTGCCTA-TTAAATAGGACA
* * * * *
39637 -ACATGAATAGTCATACTAATCACCATTATTTTCTGGACTAGGCACCATAAACATAGTCTTCTCA
385 AACATGAATAGTCATACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACATAGTATTCTCA
39701 GT-AGGATACACGATATTGATGTTT
450 -TAAGGATACACGATATTGATGTTT
* * *
39725 TGGTTTCACAAGAAAGG-TATT-TTCCCACCAATTTTTGTAAAGTCTAAGTTCATGCCTCAAACG
1 TGGTTTCGCAAGAAAGGCT-TTCTTCCCACCAATTTTTGTAAAGTCTAAGTTTATGCCTCAAATG
* * * * *
39788 AGACAAACATGAATTCTAGTAATGATCTTCT-TTAATTTTGTAATTAGCCACTATAAACACATTC
65 AGACAAATATGGATTCTAGTAATGATCTT-TATTCATTTTGTGATTAGGCACTATAAACACATTC
*
39852 TCCTCATTAGGATAAACGATATTGATGATTTTCTTTTGCATGG-AATCTTTTCTTTGCCCTA-TT
129 TCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTT
* * *
39915 TCCTTAGAATCAAGATTCAT-TACTTAAATAAGACAAGCATCGATTCTCATAACACTCTCCATTA
194 TCCTTAAAATCAAAATTCATCT-CTTAAATAAGACAAGCATCGATTCTCATAACAGTCTCCATTA
* ** * *
39979 TTTTCAAGATTGGGAACCTAAAACACATTCTTTTTATTAA-GATACAAGACATTGATGCTTTTGT
258 TTTT-AGGATT-GGAACCTAAAACACATTC-CCTTATTAAGGATACATGACATTGATGCTTTGGT
* * * * * * * * * **
40043 GTCACAAGAAAAGCTTTTATTAACCCCCGTTTTTTATGGAGTCAAAGTGTGGCTCTTAAATAACA
320 GTCGCAAGAAAAGCTTTTCTT--CCACCGTTTTTGATAGAATCAAAGTTTGCCTATTAAATAGGA
* * * * * *
40108 CAAAAATGAATAGTCAAACTAATCCCTATTCTTTTCAGGATTATGCACTATAAACATAGTCTTCT
383 CAAACATGAATAGTCATACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACATAGTATTCT
* * ** *
40173 TATTAGGATATGCAATATTGATGTTT
448 CATAAGGATACACGATATTGATGTTT
* * *
40199 TGGTTTTGCAAGAAAGGCTTTCTTCCCACCAATTTTTGCAAAGTCTAAGTTCATGCCTCAAATGA
1 TGGTTTCGCAAGAAAGGCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTTTATGCCTCAAATGA
* *
40264 GACAAATATGGATTCTAGTAATGATCTTTATTCATTTT-TGATTAGACATTATAAACACATTCT-
66 GACAAATATGGATTCTAGTAATGATCTTTATTCATTTTGTGATTAGGCACTATAAACACATTCTC
*
40327 CTGCATTAGGATAAATGATATTGACGATTTTCTTTTGCATGGAAATCTTTTCTTT-CCTCTATTT
131 CT-CATTAGGATAAATGATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCC-CTATTT
* * *
40391 TCCTTAAAATC-AAGTTTATCTCTTAAATAAGACAAGCATCGATTCTCATAGCAGTCTCCATTA-
194 TCCTTAAAATCAAAATTCATCTCTTAAATAAGACAAGCATCGATTCTCATAACAGTCTCCATTAT
* **
40454 TTTATGTGATTAGGAACCAAAAACACATTCCCTTGGTAAGGATACATGACATTGATGCTTTGGTG
259 TTTA-G-GATT-GGAACCTAAAACACATTCCCTTATTAAGGATACATGACATTGATGCTTTGGTG
** * *
40519 TCATAAGAAAAGCTTTTCTTCTACC-TTTTTGATAAAATCAAAGTTTGCCTATTAAATAGGACAA
321 TCGCAAGAAAAGCTTTTCTTCCACCGTTTTTGATAGAATCAAAGTTTGCCTATTAAATAGGACAA
* * * *
40583 ACATGAACAGTCATACTAATCCCCATTCTTTTCAAGATTAGGCGCCCTAAACATAGTATTCTCAT
386 ACATGAATAGTCATACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACATAGTATTCTCAT
* *
40648 AAGGATACACGATACTGATGCTT
451 AAGGATACACGATATTGATGTTT
** * * *
40671 TGGTTTCGCAAGAAAGGCTTTCTTCTTACCAATTTTTGTAAAGCCTAAGTTTGTGCTTCAAATGA
1 TGGTTTCGCAAGAAAGGCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTTTATGCCTCAAATGA
* * *
40736 GAGAAATATGGATTCTAGTAAAGAT-TTTCATTCATTTTCTGATTAGGCACTATAAACACATTCT
66 GACAAATATGGATTCTAGTAATGATCTTT-ATTCATTTTGTGATTAGGCACTATAAACACATTCT
* * * * *
40800 CCTTATTAGGATATATGATATTGATGATTTTCTTTTGTAT-GAATGTCGTTTCTTTGCCCTATTT
130 CCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGGAA-ATCTTTTCTTTGCCCTATTT
* * * *
40864 TCCTTAAAATCAAAATTCAT-TACTTAAGTAAGACAAGCATTGATTCTCATAATAGTCTCTATTA
194 TCCTTAAAATCAAAATTCATCT-CTTAAATAAGACAAGCATCGATTCTCATAACAGTCTCCATTA
*
40928 TTTTTAGGATTGGGAACCTAAAACACATTCCCTTCATTAA-GATACATGACATTGACGCTTTGGT
258 -TTTTAGGATT-GGAACCTAAAACACATTCCCTT-ATTAAGGATACATGACATTGATGCTTTGGT
* * *
40992 GTCGCAAGAAAAGCTTTTCTTTTC-GCGTTTTTGATAAAATCAAAGTTTGCCTATTAAATAGGAC
320 GTCGCAAGAAAAGCTTTTC-TTCCACCGTTTTTGATAGAATCAAAGTTTGCCTATTAAATAGGAC
* * *
41056 AAACATGAATAGTCATACTAATTCCCATTCTTCTTGA-GATTAGGCACCCTAAACATAGTATTCT
384 AAACATGAATAGTCATACTAATCCCCATTCTT-TTCAGGATTAGGCACCATAAACATAGTATTCT
* * *
41120 CATAAGGATACACGAGACTGATGCTT
448 CATAAGGATACACGATATTGATGTTT
* * * * *
41146 TGGTTTTGCAAGAAAGGCTTTCTTCTCACCAATTTTTGTAAAGTCTAAGCTTGTGCCTCAAAGGA
1 TGGTTTCGCAAGAAAGGCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTTTATGCCTCAAATGA
* * * *
41211 GACAAATATGGATTATAGTAATGAT-TTTCTTTCATTTTATGATTAGGCACTATAATCACATTCT
66 GACAAATATGGATTCTAGTAATGATCTTT-ATTCATTTTGTGATTAGGCACTATAAACACATTCT
* * * *
41275 CCTCATTAAGATAAATGATACTGATGATTTTATTTTGCATGGAAATCTTTTCTTTACCCTA-TTT
130 CCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTT
* * * ** * * * * * *
41339 CCTTATATTTAAAAACCATCCCTTAAATAAGTCAAGCATCAATTCTCGTAATAGTCTCCGTTATT
195 CCTTAAAATCAAAATTCATCTCTTAAATAAGACAAGCATCGATTCTCATAACAGTCTCCATTATT
*
41404 TTCAGGATTAGGAACCTAAAACACATTCCCTTCATTAA-GATACATGATATTGATGCTTTGGTGT
260 TT-AGGATT-GGAACCTAAAACACATTCCCTT-ATTAAGGATACATGACATTGATGCTTTGGTGT
* * * ** *
41468 TGCAAGAAAAGCTTTTCATTCTC-CCATTTTTGATAGAATCAAAGTTTGTCTCCTAAATAAGACA
322 CGCAAGAAAAGCTTTTC-TTC-CACCGTTTTTGATAGAATCAAAGTTTGCCTATTAAATAGGACA
* * * * *
41532 AACTTGAATAGTCATACTAATCCCCATTCTTTTCAAGACTAGGCACCATAAACTTAGTCTTCTCA
385 AACATGAATAGTCATACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACATAGTATTCTCA
* *
41597 TTAGGATACACGATATTGGTGTTT
450 TAAGGATACACGATATTGATGTTT
* * * *
41621 TGCTTTCGCAAGAAAGGCATTT-TTCCAACCAATTTTTGTAAAGCCTAAGTTCATGCCTCAAATG
1 TGGTTTCGCAAGAAAGGC-TTTCTTCCCACCAATTTTTGTAAAGTCTAAGTTTATGCCTCAAATG
* * *
41685 TGACAAACATGGATTCTAGTAATG------A-TC---TT-T-A-TAGGCACTATAAAGACATTCT
65 AGACAAATATGGATTCTAGTAATGATCTTTATTCATTTTGTGATTAGGCACTATAAACACATTCT
* * *
41737 CCTCATTTA-GATAAATGATATTGATGATTTTCTTCTGCATGGAACTCGTTTCTTTGCCCTATTT
130 CCTCA-TTAGGATAAATGATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTT
* * * * **
41801 TCCTTAAAATCAAATTTCATAC-CATAAATAAGACAAGCATTGATGCTTGTAACAGTCTCCATTA
194 TCCTTAAAATCAAAATTCAT-CTCTTAAATAAGACAAGCATCGATTCTCATAACAGTCTCCATTA
* * * *
41865 TTTTCAGGATTGGAAACCTAAAACACATTCCCTTCAGT-ATGATACATGACATTGATGGTTTGTT
258 TTTT-AGGATTGG-AACCTAAAACACATTCCCTT-ATTAAGGATACATGACATTGATGCTTTGGT
* * * * *
41929 GTCGCAAGAAAAGCTTTTCTTTTCGCCATTTTTGATAAAATCAAAGTTTCCCTATTAAATAGGAC
320 GTCGCAAGAAAAGCTTTTC-TTCCACCGTTTTTGATAGAATCAAAGTTTGCCTATTAAATAGGAC
* * ** *
41994 AAATATGAATAGTAATACTAATCCCCATTCTTTTTGGGATTAGGCACCCTAAACATAGTATTCTC
384 AAACATGAATAGTCATACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACATAGTATTCTC
*
42059 ATAAGGATACACGATATTGATGCTT
449 ATAAGGATACACGATATTGATGTTT
* * * *
42084 TGGTCTCCCAAGAAAGGTTTTCTTGCCACCAATTTTTGTAAAGTCTAAGTTTATGCCTCAAATGA
1 TGGTTTCGCAAGAAAGGCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTTTATGCCTCAAATGA
*
42149 GACAAATATGGATTCTAG-AATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTC
66 GACAAATATGGATTCTAGTAATGATCTTTATTCATTTTGTGATTAGGCACTATAAACACATTCTC
* * * * *
42213 CTCATTAGGATAAATGATAATGATGATTTTTTTTTGCATAGAAATCTTTCCTTTGCCTTATTTTC
131 CTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTC
* * * * * *
42278 CATAAAATCAAAGTTCATCCCATAAATAAGATAAGAATCGATTCTCATAACAGTCTCCATTATTT
196 CTTAAAATCAAAATTCATCTCTTAAATAAGACAAGCATCGATTCTCATAACAGTCTCCATTATTT
* *
42343 TCAGGATTGAGAACCTAAAACACATTCCCTTCATT-AGGTTACATGACATTGATGCTTTGGTGTA
261 T-AGGATTG-GAACCTAAAACACATTCCCTT-ATTAAGGATACATGACATTGATGCTTTGGTGTC
*
42407 ACAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGCCTATTAAATAGGACAAA
323 GCAAGAAAAGCTTTTC-TTCCACCGTTTTTGATAGAATCAAAGTTTGCCTATTAAATAGGACAAA
* * * *
42472 TATGAATAGTCAAACTAATCCCCATTCTTTTCGGGATTAGGCACCTTAAACATAGTATTCTCATA
387 CATGAATAGTCATACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACATAGTATTCTCATA
* * * * *
42537 AAGATACATGTTACTGCT-TCTT
452 AGGATACACGATATTGATGT-TT
* * * *
42559 TGGTATT-GCAAGAAAGGCTTTCTTCTCACCAATTCTTATAAAGTCTAAGTTTGTGCCTCAAATG
1 TGGT-TTCGCAAGAAAGGCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTTTATGCCTCAAATG
*
42623 AGACAAATATGGATTCTAGTAATGAT-TTTCATTCATTTTCTGATTAGGCACTATAAACACATTC
65 AGACAAATATGGATTCTAGTAATGATCTTT-ATTCATTTTGTGATTAGGCACTATAAACACATTC
** *
42687 TCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATTAAAAT-TGTTT-TTTGCCCTACT
129 TCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGGAAATCT-TTTCTTTGCCCTATT
* * * *
42750 TTCCTTAAAATCAAAATTCAT-TACTTAAATAAGACAAGCATTGATTCTCGTAACGGTCTCCTTT
193 TTCCTTAAAATCAAAATTCATCT-CTTAAATAAGACAAGCATCGATTCTCATAACAGTCTCCATT
** * * *
42814 ATTTTCAGGATTTCAAACCTAAAACACATTCCTTTCA-TCAGGTTACATGACATTGATGCTTTGG
257 ATTTT-AGGA-TTGGAACCTAAAACACATTCCCTT-ATTAAGGATACATGACATTGATGCTTTGG
* * *
42878 TGTCGCAAGAAAAGCATTTCTTTCCACCGTTTTTGATAGAATCAAAGTCTGCCTTTTAAATAGGA
319 TGTCGCAAGAAAAGCTTTTC-TTCCACCGTTTTTGATAGAATCAAAGTTTGCCTATTAAATAGGA
* * * * *
42943 TAAACATGAATCGTCATACTAATCCCCATTCTTTTTAGGATTAGGCACCACAAACATAGTCTTCT
383 CAAACATGAATAGTCATACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACATAGTATTCT
* * * *
43008 CATTAGGATAAATGATATTGATATTT
448 CATAAGGATACACGATATTGATGTTT
43034 T
1 T
43035 TCTTTTGCGT
Statistics
Matches: 2859, Mismatches: 374, Indels: 151
0.84 0.11 0.04
Matches are distributed among these distances:
462 81 0.03
463 309 0.11
464 2 0.00
465 2 0.00
468 7 0.00
469 116 0.04
470 26 0.01
471 134 0.05
472 247 0.09
473 95 0.03
474 410 0.14
475 1315 0.46
476 115 0.04
ACGTcount: A:0.32, C:0.18, G:0.14, T:0.36
Consensus pattern (473 bp):
TGGTTTCGCAAGAAAGGCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTTTATGCCTCAAATGA
GACAAATATGGATTCTAGTAATGATCTTTATTCATTTTGTGATTAGGCACTATAAACACATTCTC
CTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTC
CTTAAAATCAAAATTCATCTCTTAAATAAGACAAGCATCGATTCTCATAACAGTCTCCATTATTT
TAGGATTGGAACCTAAAACACATTCCCTTATTAAGGATACATGACATTGATGCTTTGGTGTCGCA
AGAAAAGCTTTTCTTCCACCGTTTTTGATAGAATCAAAGTTTGCCTATTAAATAGGACAAACATG
AATAGTCATACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACATAGTATTCTCATAAGGA
TACACGATATTGATGTTT
Found at i:42048 original size:159 final size:157
Alignment explanation
Indices: 41859--43363 Score: 434
Period size: 159 Copynumber: 9.5 Consensus size: 157
41849 GTAACAGTCT
* * * * * * *
41859 CCATTATTTTCAGGATT-GGAAACCTAAAACACATTCCCTTCAGTATGATACATGACATTGATGG
1 CCATTCTTTTCGGGATTAGGCACCCT-AAACACATTCCC-TCATTAGGATACATGACATTGATGC
* * *
41923 TTTGTTGTCGCAAGAAAAGCTTTTCTTTTCGCC-ATTTTTGATAAAATCAAAGTT-TCCCTATTA
64 TTTGGTGTCGCAAG-AAAGCTTTTCTTTCCACCTATTTTTGATAAAATCAAAGTTATCCC-ATTA
*
41986 AATAGGACAAATATGAATAGTAATACTAATCC
127 AATAGGACAAATATGAATACTAA-ACTAATCC
* * * * * *
42018 CCATTCTTTTTGGGATTAGGCACCCTAAACATAGTAT-TCTCATAAGGATACACGATATTGATGC
1 CCATTCTTTTCGGGATTAGGCACCCTAAACACA-T-TCCCTCATTAGGATACATGACATTGATGC
* * * * * * * * *
42082 TTTGGTCTCCCAAGAAAGGTTTTCTTGCCACCAATTTTTG-TAAAGTCTAAGTTTATGCC-TCAA
64 TTTGGTGTCGCAAGAAAGCTTTTCTTTCCACCTATTTTTGATAAAATCAAAG-TTATCCCATTAA
* * * *
42145 AT-GAGACAAATATGGATTCTAGAA-TGATCT
128 ATAG-GACAAATATGAATACTA-AACTAATCC
* * ** * * * *
42175 TCATTCATTTT-GTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGATAATGATGA
1 CCATTC-TTTTCGGGATTAGGCACCCTAAACACATTC-CCTCATTAGGATACATGACATTGATGC
** * * * * * * **
42239 TTTTTTTTTGCATAGAAATCTTTCCTTTGC-CTTATTTTCCATAAAATCAAAGTTCATCCCA-TA
64 TTTGGTGTCGCA-AGAAAGCTTTTCTTTCCACCTATTTTTGATAAAATCAAAGTT-ATCCCATTA
* * * * *
42302 AATAAGATAAGA-ATCG-ATTCTCATAAC-AGTCT
127 AATAGGACAA-ATAT-GAATACT-A-AACTAATCC
* * * *
42334 CCATTATTTTCAGGATT-GAG-AACCTAAAACACATTCCCTTCATTAGGTTACATGACATTGATG
1 CCATTCTTTTCGGGATTAG-GCACCCT-AAACACATTCCC-TCATTAGGATACATGACATTGATG
** * * *
42397 CTTTGGTGTAACAAGAAAAGCTTTTCTTTCCACC-GTTTTTGATAGAATCAAAGTT-TGCCTATT
63 CTTTGGTGTCGCAAG-AAAGCTTTTCTTTCCACCTATTTTTGATAAAATCAAAGTTAT-CCCATT
*
42460 AAATAGGACAAATATGAATAGTCAAACTAATCC
126 AAATAGGACAAATATGAATACT-AAACTAATCC
* * * * * ** * * *
42493 CCATTCTTTTCGGGATTAGGCACCTTAAACATAGTAT-TCTCATAAAGATACATGTTACTGCTTC
1 CCATTCTTTTCGGGATTAGGCACCCTAAACACA-T-TCCCTCATTAGGATACATGACATTGATGC
* * * * * * * * *
42557 TTTGGTATTGCAAGAAAGGC-TTTC-TTCTCACCAATTCTT-ATAAAGTCTAAGTTTGTGCC-TC
64 TTTGGTGTCGCAAGAAA-GCTTTTCTTTC-CACCTATTTTTGATAAAATCAAAG-TTATCCCATT
* * * **
42618 AAAT-GAGACAAATATGGATTCTAGTAA-TGATTT
126 AAATAG-GACAAATATGAATACTA--AACTAATCC
* * ** * * *
42651 TCATTCATTTTC-TGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGATATTGATGA
1 CCATTC-TTTTCGGGATTAGGCACCCTAAACACATTC-CCTCATTAGGATACATGACATTGATGC
** * * ** * * * * *** * **
42715 TTTTCTTTTGCATTAAA-ATTGTTTTTTGC-CCTACTTTCCTTAAAATCAAAATTCATTAC-TTA
64 TTTGGTGTCGCAAGAAAGCTT-TTCTTTCCACCTATTTTTGATAAAATCAAAGTT-ATCCCATTA
* * * ** *
42777 AATAAGACAAGCAT-TG-ATTCTCGTAAC-GGTCT
127 AATAGGACAA--ATATGAATACT--AAACTAATCC
* * * * * * * *
42809 CCTTTATTTTCAGGATT--TCAAACCTAAAACACATTCCTTTCATCAGGTTACATGACATTGATG
1 CCATTCTTTTCGGGATTAGGC-ACCCT-AAACACATTCC-CTCATTAGGATACATGACATTGATG
* * * * **
42872 CTTTGGTGTCGCAAGAAAAGCATTTCTTTCCACC-GTTTTTGATAGAATCAAAGTCT-GCCTTTT
63 CTTTGGTGTCGCAAG-AAAGCTTTTCTTTCCACCTATTTTTGATAAAATCAAAGT-TATCCCATT
* * *
42935 AAATAGGATAAACATGAAT-CGTCATACTAATCC
126 AAATAGGACAAATATGAATAC-T-AAACTAATCC
** * * * * * **
42968 CCATTCTTTTTAGGATTAGGCACCAC-AAACATAGTCTTCTCATTAGGATAAATGATATTGATAT
1 CCATTCTTTTCGGGATTAGGCACC-CTAAACACATTC-CCTCATTAGGATACATGACATTGATGC
** * * ** * * *** *
43032 TTTTCTTTTGCGTGGAAATCTTTTCTTTCC-CCCATTTTCCTTAAAATCAAAGTTTATCTC-TTA
64 TTTGGTGTCGC-AAGAAAGCTTTTCTTTCCACCTATTTTTGATAAAATCAAAG-TTATCCCATTA
* * ** * * * * * *
43095 AATAAGATAAGCATCACTTCATGAA-TAGTCT
127 AATAGGACAAATATGAATAC-TAAACTAATCC
* *** * ** * * *
43126 CCATTATTTTAATGATTAGGAACCAAAAACACTTTCCCTTCTTTAGGTTACATGACATTGATGCT
1 CCATTCTTTTCGGGATTAGGCACCCTAAACACATTCCC-TCATTAGGATACATGACATTGATGCT
* * * * **
43191 TTGGTGTTGCAAAAAAAGCTTTTCTTTCCA-CTGTTTTTGATAGAATCAAAGTT-TGCCTTTTAA
65 TTGGTGTCGC-AAGAAAGCTTTTCTTTCCACCTATTTTTGATAAAATCAAAGTTAT-CCCATTAA
* * * **
43254 ATAGGACAAACATTAATAGTCGTACTAATCC
128 ATAGGACAAATATGAATACT-AAACTAATCC
* * * * * * * *
43285 CTATTCTTTTCAGGATTAGGCACCGTAAACATTATAT-TCTCATAAGGATACACGACACTGATGC
1 CCATTCTTTTCGGGATTAGGCACCCTAAACA-CAT-TCCCTCATTAGGATACATGACATTGATGC
*
43349 TTTGGTTTCGCAAGA
64 TTTGGTGTCGCAAGA
43364 GGCTTTCTTG
Statistics
Matches: 951, Mismatches: 307, Indels: 177
0.66 0.21 0.12
Matches are distributed among these distances:
155 1 0.00
156 4 0.00
157 93 0.10
158 392 0.41
159 422 0.44
160 34 0.04
161 5 0.01
ACGTcount: A:0.31, C:0.18, G:0.14, T:0.36
Consensus pattern (157 bp):
CCATTCTTTTCGGGATTAGGCACCCTAAACACATTCCCTCATTAGGATACATGACATTGATGCTT
TGGTGTCGCAAGAAAGCTTTTCTTTCCACCTATTTTTGATAAAATCAAAGTTATCCCATTAAATA
GGACAAATATGAATACTAAACTAATCC
Found at i:42726 original size:158 final size:162
Alignment explanation
Indices: 41716--42726 Score: 435
Period size: 159 Copynumber: 6.4 Consensus size: 162
41706 ATGATCTTTA
* ** * * *
41716 TAGGCA-CTATAAAGACATTCTCCTCATTTA-GATAAATGATATTGATGATTTTCTTCTGCATGG
1 TAGGCACCTATAAACACATTCTCCTCA-TTAGGATAAATGATATTGATGATTTGGTTTTGCAAGA
** * * * * * * * **
41779 AACTCGTTTCTTTGC-CCTATTTTCCTTAAAATCAAA-TTTCATACCAT-AAATAAGACAAGCAT
65 AAGGC-TTTCTTTCCACCAATTTTTCATAAAGTCAAAGTTT-ATGCCATCAAATGAGACAAATAT
* * * *
41841 TGATGCTTGTAA-CAGTCTCCATT-ATTTTCAGGAT
128 GGATTCTAGTAATGA-TCTCCATTCATTTTCAGGAT
* * * * * * *
41875 T-GGAAACCTA-AAACACATTC-CCTTCAGTATGATACATGACATTGATGGTTT-GTTGTCGCAA
1 TAGG-CACCTATAAACACATTCTCC-TCATTAGGATAAATGATATTGATGATTTGGTT-TTGCAA
* * * * * * *
41936 GAAAAGCTTTTCTTTTCGCC-ATTTTTGATAAAATCAAAG-TT-TCCCTATTAAAT-AGGACAAA
63 GAAAGGC-TTTCTTTCCACCAATTTTTCATAAAGTCAAAGTTTATGCC-ATCAAATGA-GACAAA
* ** * * * * **
41997 TATGAATAGTAATACTAATCCCCATTC-TTTTTGGGAT
125 TATGGATTCTAGTAATGATCTCCATTCATTTTCAGGAT
* * * * * * * * * * **
42034 TAGGCACC-CTAAACATAGTATTCTCATAAGGATACACGATATTGATGCTTTGGTCTCCCAAGAA
1 TAGGCACCTATAAACACATTCTCCTCATTAGGATAAATGATATTGATGATTTGGTTTTGCAAGAA
* * * *
42098 AGGTTTTCTTGCCACCAATTTTT-GTAAAGTCTAAGTTTATGCC-TCAAATGAGACAAATATGGA
66 AGGCTTTCTTTCCACCAATTTTTCATAAAGTCAAAGTTTATGCCATCAAATGAGACAAATATGGA
*
42161 TTCTAG-AATGATCTTCATTCATTTT--GTGAT
131 TTCTAGTAATGATCTCCATTCATTTTCAG-GAT
* **
42191 TAGGCA-CTATAAACACATTCTCCTCATTAGGATAAATGATAATGATGATTTTTTTTTGCATAGA
1 TAGGCACCTATAAACACATTCTCCTCATTAGGATAAATGATATTGATGATTTGGTTTTGCA-AGA
* * ** * * * * * *
42255 AA-TCTTTCCTTTGC-CTTATTTTCCATAAAATCAAAGTTCATCCCAT-AAATAAGATAAGA-AT
65 AAGGCTTT-CTTTCCACCAATTTTTCATAAAGTCAAAGTTTATGCCATCAAATGAGACAA-ATAT
* *
42316 CGATTCTCA-TAA-CAGTCTCCATT-ATTTTCAGGAT
128 GGATTCT-AGTAATGA-TCTCCATTCATTTTCAGGAT
* * * * * * **
42350 T-GAGAACCTA-AAACACATTC-CCTTCATTAGGTTACATGACATTGATGCTTTGGTGTAACAAG
1 TAG-GCACCTATAAACACATTCTCC-TCATTAGGATAAATGATATTGATGATTTGGTTTTGCAAG
* * * *
42412 AAAAGCTTTTCTTTCCACC-GTTTTTGATAGAA-TCAAAG-TT-TGCCTATTAAAT-AGGACAAA
64 AAAGGC-TTTCTTTCCACCAATTTTTCATA-AAGTCAAAGTTTATGCC-ATCAAATGA-GACAAA
* * * *
42472 TAT-GA--ATAGTCAAACTAATCCCCATTC-TTTTCGGGAT
125 TATGGATTCTAGT--AA-TGATCTCCATTCATTTTCAGGAT
* * * * * * * * * * ** *
42509 TAGGCACCT-TAAACATAGTATTCTCATAAAGATACATGTTACTGCTTCTTTGGTATTGCAAGAA
1 TAGGCACCTATAAACACATTCTCCTCATTAGGATAAATGATATTGATGATTTGGTTTTGCAAGAA
* * *
42573 AGGCTTTC-TTCTCACCAATTCTT-ATAAAGTCTAAGTTTGTGCC-TCAAATGAGACAAATATGG
66 AGGCTTTCTTTC-CACCAATTTTTCATAAAGTCAAAGTTTATGCCATCAAATGAGACAAATATGG
* * *
42635 ATTCTAGTAATGATTTTCATTCATTTTC-TGAT
130 ATTCTAGTAATGATCTCCATTCATTTTCAGGAT
**
42667 TAGGCA-CTATAAACACATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCA
1 TAGGCACCTATAAACACATTCTCCTCATTAGGATAAATGATATTGATGATTTGGTTTTGCA
42727 TTAAAATTGT
Statistics
Matches: 626, Mismatches: 162, Indels: 129
0.68 0.18 0.14
Matches are distributed among these distances:
155 1 0.00
156 4 0.01
157 78 0.12
158 199 0.32
159 309 0.49
160 31 0.05
161 4 0.01
ACGTcount: A:0.32, C:0.18, G:0.14, T:0.36
Consensus pattern (162 bp):
TAGGCACCTATAAACACATTCTCCTCATTAGGATAAATGATATTGATGATTTGGTTTTGCAAGAA
AGGCTTTCTTTCCACCAATTTTTCATAAAGTCAAAGTTTATGCCATCAAATGAGACAAATATGGA
TTCTAGTAATGATCTCCATTCATTTTCAGGAT
Found at i:43239 original size:317 final size:316
Alignment explanation
Indices: 42664--43334 Score: 850
Period size: 317 Copynumber: 2.1 Consensus size: 316
42654 TTCATTTTCT
* * * *
42664 GATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATT
1 GATTAGGCACCATAAACATA-TCTTCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATG
* * *
42729 AAAATTGTTTTTTGCCCTACTTTCCTTAAAATCAAAATTCATTACTTAAATAAGACAAGCATTGA
65 AAAATTGTTTTTTCCCCCACTTTCCTTAAAATCAAAATTCATTACTTAAATAAGACAAGCATTCA
* * * * * *
42794 TTCTCGTAACGGTCTCCTTTATTTTCAGGATTTCAAACCTAAAACACATTCCTTTCATCAGGTTA
130 TTCTCGTAACAGTCTCCATTATTTTAAGGATTACAAACCAAAAACACATTCCCTTCATCAGGTTA
*
42859 CATGACATTGATGCTTTGGTGTCGCAAGAAAAGCATTTCTTTCCACCGTTTTTGATAGAATCAAA
195 CATGACATTGATGCTTTGGTGTCGCAAAAAAAGCATTTCTTTCCACCGTTTTTGATAGAATCAAA
* * *
42924 GTCTGCCTTTTAAATAGGATAAACATGAATCGTCATACTAATCCCCATTCTTTTTAG
260 GTCTGCCTTTTAAATAGGACAAACATGAATAGTCATACTAATCCCCATTCTTTTCAG
* *
42981 GATTAGGCACCACAAACATAGTCTTCTCATTAGGATAAATGATATTGAT-ATTTTTCTTTTGCGT
1 GATTAGGCACCATAAACATA-TCTTCTCATTAGGATAAATGATATTGATGA-TTTTCTTTTGCAT
* * * * *
43045 GGAAATCT-TTTCTTTCCCCCATTTTCCTTAAAATCAAAGTTTATCT-CTTAAATAAGATAAGCA
64 GAAAAT-TGTTT-TTTCCCCCACTTTCCTTAAAATCAAAATTCAT-TACTTAAATAAGACAAGCA
* * ** * * *
43108 -TCACTTCAT-G-AATAGTCTCCATTATTTTAATGATTAGGAACCAAAAACACTTTCCCTTCTTT
126 TTCA-TTC-TCGTAACAGTCTCCATTATTTTAAGGATTACAAACCAAAAACACATTCCCTTCATC
* * *
43170 AGGTTACATGACATTGATGCTTTGGTGTTGCAAAAAAAGCTTTTCTTTCCACTGTTTTTGATAGA
189 AGGTTACATGACATTGATGCTTTGGTGTCGCAAAAAAAGCATTTCTTTCCACCGTTTTTGATAGA
* * * *
43235 ATCAAAGTTTGCCTTTTAAATAGGACAAACATTAATAGTCGTACTAATCCCTATTCTTTTCAG
254 ATCAAAGTCTGCCTTTTAAATAGGACAAACATGAATAGTCATACTAATCCCCATTCTTTTCAG
* * *
43298 GATTAGGCACCGTAAACATTATATTCTCATAAGGATA
1 GATTAGGCACCATAAACA-TATCTTCTCATTAGGATA
43335 CACGACACTG
Statistics
Matches: 304, Mismatches: 43, Indels: 14
0.84 0.12 0.04
Matches are distributed among these distances:
316 1 0.00
317 251 0.83
318 50 0.16
319 2 0.01
ACGTcount: A:0.31, C:0.19, G:0.13, T:0.37
Consensus pattern (316 bp):
GATTAGGCACCATAAACATATCTTCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGA
AAATTGTTTTTTCCCCCACTTTCCTTAAAATCAAAATTCATTACTTAAATAAGACAAGCATTCAT
TCTCGTAACAGTCTCCATTATTTTAAGGATTACAAACCAAAAACACATTCCCTTCATCAGGTTAC
ATGACATTGATGCTTTGGTGTCGCAAAAAAAGCATTTCTTTCCACCGTTTTTGATAGAATCAAAG
TCTGCCTTTTAAATAGGACAAACATGAATAGTCATACTAATCCCCATTCTTTTCAG
Found at i:43293 original size:792 final size:793
Alignment explanation
Indices: 42188--43800 Score: 2183
Period size: 792 Copynumber: 2.0 Consensus size: 793
42178 TTCATTTTGT
* * * *
42188 GATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGATAATGATGATTTTTTTTTGCATA
1 GATTAGGCACCATAAACATAGTCTTCTCATTAGGATAAATGATAATGATGATTTTTTTTTGCATA
* **
42253 GAAATCTTTCCTTTGCCTTATTTTCCATAAAATCAAAGTTCATCCCATAAATAAGATAAGAATCG
66 GAAATCTTTCCTTTCCCCCATTTTCCATAAAATCAAAGTTCATCCCATAAATAAGATAAGAATCG
* * *
42318 ATTCTCATAACAGTCTCCATTATTTTCAGGATTGAGAACCTAAAACACATTCCCTTCATTAGGTT
131 ACTCTCATAACAGTCTCCATTATTTTAAGGATTGAGAACCAAAAACACATTCCCTTCATTAGGTT
*
42383 ACATGACATTGATGCTTTGGTGTAACAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAA
196 ACATGACATTGATGCTTTGGTGTAACAAAAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAA
* *
42448 AGTTTGCCTATTAAATAGGACAAATATGAATAGTCAAACTAATCCCCATTCTTTTCGGGATTAGG
261 AGTTTGCCTATTAAATAGGACAAACATGAATAGTCAAACTAATCCCCATTCTTTTCAGGATTAGG
* * ** * *
42513 CACCTTAAACA-TAGTATTCTCATAAAGATACATGTTACTGCTTCTTTGGTATT-GCAAGAAAGG
326 CACCGTAAACATTA-TATTCTCATAAAGATACACGACACTGATGCTTTGGT-TTCGCAAG--AGG
*
42576 CTTTCTTCTCACCAATTCTTATAAAGTCTAAGTTTGTGCCTCAAATGAGAC-AAATATGGATTCT
387 CTTTCTTCTCACAAATTCTTATAAAGTCTAAGTTTGTGCCTCAAATGAGACAAAATATGGATTCT
* * *
42640 AGTAATGATTTTCATTCATTTTCTGATTAGGCACTATAAACACATTCTCC-TCATTAGGAT-AAA
452 AGTAATGATCTTCATTAATTTTCTGATTAGGCACTATAAACACATTC-CCATCATTAAGATAAAA
* * * * * *
42703 TGATATTGATGATTTTCTTTTGCATTAAAAT-TGTTTTTTGCCCTACTTTCCTTAAAAT-CAAAA
516 T-ATATTAATGATTTTCCTTTG-ATGAAAATCTGTTCTCTACCCTACTTTCCTTAAAATCCAAAA
* * * ** * * * *
42766 TTCAT-TACTTAAATAAGACAAGCATTGATTCTCGTAACGGTCTCCTTTATTTTCAGGATTTCAA
579 TTCATCT-CATAAATAAGACAAGCATCGATTCTCATAACAATCTCCATTATATTAAGGATTGCAA
* *
42830 ACCTAAAACACATT-CCTTTCATCAGGTTACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCA
643 ACCTAAAACACATTCCCTTT-ATCAGGATACATGACATTGAAGCTTTGGTGTCGCAAGAAAAGCA
* * * *
42894 TTTCTTTCCACCGTTTTTGATAGAATCAAAGTCTGCCTTTTAAATAGGATAAACATGAAT-CGTC
707 TTTCTTCCCACCATTTTTGATAGAATCAAAGTCTGCCTCTTAAATAAGATAAACATGAATAC-TC
42958 ATACTAATCCCCATTCTTTTTAG
771 ATACTAATCCCCATTCTTTTTAG
* * *
42981 GATTAGGCACCACAAACATAGTCTTCTCATTAGGATAAATGATATTGAT-ATTTTTCTTTTGCGT
1 GATTAGGCACCATAAACATAGTCTTCTCATTAGGATAAATGATAATGATGATTTTT-TTTTGCAT
* * * * * * *
43045 GGAAATCTTTTCTTTCCCCCATTTTCCTTAAAATCAAAGTTTATCTCTTAAATAAGATAAGCATC
65 AGAAATCTTTCCTTTCCCCCATTTTCCATAAAATCAAAGTTCATCCCATAAATAAGATAAGAATC
* * * *
43110 -ACT-TCATGAATAGTCTCCATTATTTTAATGATT-AGGAACCAAAAACACTTTCCCTTCTTTAG
130 GACTCTCAT-AACAGTCTCCATTATTTTAAGGATTGA-GAACCAAAAACACATTCCCTTCATTAG
** *
43172 GTTACATGACATTGATGCTTTGGTGTTGCAAAAAAAGCTTTTCTTTCCACTGTTTTTGATAGAAT
193 GTTACATGACATTGATGCTTTGGTGTAACAAAAAAAGCTTTTCTTTCCACCGTTTTTGATAGAAT
* * ** *
43237 CAAAGTTTGCCTTTTAAATAGGACAAACATTAATAGTCGTACTAATCCCTATTCTTTTCAGGATT
258 CAAAGTTTGCCTATTAAATAGGACAAACATGAATAGTCAAACTAATCCCCATTCTTTTCAGGATT
*
43302 AGGCACCGTAAACATTATATTCTCATAAGGATACACGACACTGATGCTTTGGTTTCGCAAGAGGC
323 AGGCACCGTAAACATTATATTCTCATAAAGATACACGACACTGATGCTTTGGTTTCGCAAGAGGC
* ** * * *
43367 TTTCTTGTGGCAAATTTTTGTAAAGTCTAAGTTTGTGCCTCAAATGAGACAAAATATGGATTTTA
388 TTTCTTCTCACAAATTCTTATAAAGTCTAAGTTTGTGCCTCAAATGAGACAAAATATGGATTCTA
* *
43432 GTAATGATCTTCATTAATTTTGTGTTTAGGCACTATAAACACATTCCCATCATTAAGATAAAATA
453 GTAATGATCTTCATTAATTTTCTGATTAGGCACTATAAACACATTCCCATCATTAAGATAAAATA
* * * * *
43497 TGTTAATGATTTTCCTTTGATGGAAATCTGTTCTCTACTCTATTTTCCTTAAAATCCAAAGTTCA
518 TATTAATGATTTTCCTTTGATGAAAATCTGTTCTCTACCCTACTTTCCTTAAAATCCAAAATTCA
* ** *
43562 TCTCATAAATAAGACAAGCATCGATTCTCATAATAATCTCCATTATATTAAGGATTGGGAACTTA
583 TCTCATAAATAAGACAAGCATCGATTCTCATAACAATCTCCATTATATTAAGGATTGCAAACCTA
* * *
43627 AAACACATTCCCTTTATTAGGATACATGACATTGAAGCTTTGGTGTTGTAAGAAAAGCATTTCTT
648 AAACACATTCCCTTTATCAGGATACATGACATTGAAGCTTTGGTGTCGCAAGAAAAGCATTTCTT
* * * * *
43692 CCCACCATTTTTGATGGAATCAAAGTTTGTCTCTTAAATAAGATAGATATGAATACTCATACTAA
713 CCCACCATTTTTGATAGAATCAAAGTCTGCCTCTTAAATAAGATAAACATGAATACTCATACTAA
43757 TCCCCATTCTTTTTAG
778 TCCCCATTCTTTTTAG
43773 GATTAGGCACCATAAACATAGTCTTCTC
1 GATTAGGCACCATAAACATAGTCTTCTC
43801 TAGAAGCAAT
Statistics
Matches: 714, Mismatches: 93, Indels: 27
0.86 0.11 0.03
Matches are distributed among these distances:
790 56 0.08
791 110 0.15
792 434 0.61
793 114 0.16
ACGTcount: A:0.32, C:0.18, G:0.13, T:0.37
Consensus pattern (793 bp):
GATTAGGCACCATAAACATAGTCTTCTCATTAGGATAAATGATAATGATGATTTTTTTTTGCATA
GAAATCTTTCCTTTCCCCCATTTTCCATAAAATCAAAGTTCATCCCATAAATAAGATAAGAATCG
ACTCTCATAACAGTCTCCATTATTTTAAGGATTGAGAACCAAAAACACATTCCCTTCATTAGGTT
ACATGACATTGATGCTTTGGTGTAACAAAAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAA
AGTTTGCCTATTAAATAGGACAAACATGAATAGTCAAACTAATCCCCATTCTTTTCAGGATTAGG
CACCGTAAACATTATATTCTCATAAAGATACACGACACTGATGCTTTGGTTTCGCAAGAGGCTTT
CTTCTCACAAATTCTTATAAAGTCTAAGTTTGTGCCTCAAATGAGACAAAATATGGATTCTAGTA
ATGATCTTCATTAATTTTCTGATTAGGCACTATAAACACATTCCCATCATTAAGATAAAATATAT
TAATGATTTTCCTTTGATGAAAATCTGTTCTCTACCCTACTTTCCTTAAAATCCAAAATTCATCT
CATAAATAAGACAAGCATCGATTCTCATAACAATCTCCATTATATTAAGGATTGCAAACCTAAAA
CACATTCCCTTTATCAGGATACATGACATTGAAGCTTTGGTGTCGCAAGAAAAGCATTTCTTCCC
ACCATTTTTGATAGAATCAAAGTCTGCCTCTTAAATAAGATAAACATGAATACTCATACTAATCC
CCATTCTTTTTAG
Found at i:47059 original size:474 final size:474
Alignment explanation
Indices: 45903--50074 Score: 4030
Period size: 474 Copynumber: 8.8 Consensus size: 474
45893 CCACTACCTA
* * * * * *
45903 ATATTGATGCTTTGGTTTTGCAAGAAAGGC-TTTCTTGCCACCATTTTTTTTAAAGTCTAAGTTT
1 ATATTGGTGTTTTGGTTTCGCAAGAAAGGCATTT-TT-CCACCAATTTTTGTAAAGTCTAAGTTC
* * * * * *
45967 GTGCCTCAAATAAAACAAACACGGATTCTAGTAATAATCTTCATTCATTTTGTGATTAGGCACTA
64 ATGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTTATTTTGTGATTAGGCACTA
* ** * * * *
46032 AAAACACATTCTCCTTTTTAAGATAAATGATACTGAAGATTTT-TTTTTCGATGGAAATCTTTTC
129 TAAACACATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGC-ATGGAAATCTTTTC
* * * *
46096 TTTGCCCTATTTTCCTTAAAATCAAAGTTCACC-CAATGAATAAGACAAGCATCGATCCTCGTAA
193 TTTGCCCTATTTTCCTTAAAATCAAAGTTTACCTC-TTAAATAAGACAAGCATCGATTCTCGTAA
** * * *
46160 TAGTCTCCACAATTTT-AAGGATTGGGAAC-ATAAAACACATTCCATTCATTAAGATACATGAAA
257 TAGTCTCCATTATTTTCAA-GATTGGGAACTA-AAAACACATTCCCTTCATTAGGATACATGACA
* *
46223 TTGATGCTTTGGTGTCGCAAGAAATGCTTTTCTTTCCACCATTTTTGGTAGAATCAAAGTTTGCC
320 TTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCA-CATTTTTGATAGAATCAAAGTTTGCC
* * * *
46288 TCTGAAATAGGACAAACAAGAATAGTCATACTAATCCCCATTCTTTTCGGGATTAGGCCCCATAA
384 TCTTAAATAGGACAAACATGAATAGTCATACTAATCCCCATTCTTTTCAGGATTAGGCACCATAA
* *
46353 ACATAG--------TAAGTATACATG
449 ACATAGTATTCTCATAAGGATACGTG
* ** * * * * * *
46371 ACATTCATGCTTTGGTTTCGCAAGAAAGACTTTTTTCCCACCAATTTTCGTAAAGTCTGAGTT-G
1 ATATTGGTGTTTTGGTTTCGCAAGAAAGGCATTTTT-CCACCAATTTTTGTAAAGTCTAAGTTCA
* * * * *
46435 TGACTCAAATAAGACAAACAAGGATTCTAGTAATGATCTTCATTCATTTTTTGATTAGG-AGCTA
65 TGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTTATTTTGTGATTAGGCA-CTA
* * *
46499 TAAACACATTCTCCTCATTAGGATAAATAATATTAATGATTTTCTTTTGCATGAAAATCTTTTCT
129 TAAACACATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGGAAATCTTTTCT
* * * * * * *
46564 TTGCCCTATTTT-TTATAAAATCAAAGGTCT-CCCCTAAAATAAGACAAGCATCAATTCTCATAG
194 TTGCCCTATTTTCCT-TAAAATCAAA-GTTTACCTCTTAAATAAGACAAGCATCGATTCTCGTAA
* * * * ** *
46627 TAGTCTCCAGTCTTTTCAAGTTTGGGAACTGAAAATGCATACCCTTCATTAGGATACATGACATT
257 TAGTCTCCATTATTTTCAAGATTGGGAACTAAAAACACATTCCCTTCATTAGGATACATGACATT
* * *
46692 GATGCTTTGGTGTCGTAAGAAATGCTTTTCTTTCCAC-TTTTTCGATAGGATCAAAGTTTGCCTC
322 GATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACATTTTT-GATAGAATCAAAGTTTGCCTC
** * *
46756 TTAAATAGGACAAACAAAAATAGTCATAATAATGCCCATT-TTTTCAGGATTAGGCACCATAAAC
386 TTAAATAGGACAAACATGAATAGTCATACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAAC
* * *
46820 ATTGTATTCTCATAAGTATACATG
451 ATAGTATTCTCATAAGGATACGTG
* * * * * * * *
46844 ATA-TGGATGCTTTGGTTTCACAAAAAAGACTTTTTTCCCCCTAATTTTCGTAAAGTCTGAGTTC
1 ATATTGG-TGTTTTGGTTTCGCAAGAAAGGCATTTTTCCACC-AATTTTTGTAAAGTCTAAGTTC
* * * * **
46908 CTGACTCAAATGAGACAAACAGGGATTCTAGTAATGATCTTCATTTAATTTGTGATTATACACTA
64 ATGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTTATTTTGTGATTAGGCACTA
* *
46973 TAAACACATTCTCCCCATTAGGATAAATTG-TATTGATGATTTTCTTTTGCGTGGAAATCTTTTC
129 TAAACACATTCTCCTCATTAGGATAAA-TGATATTGATGATTTTCTTTTGCATGGAAATCTTTT-
* * *
47037 CTTT-CCCTGTTTTCCTTAAAATCAAAGTTTATCTCTTAAATAAGACAAGCATCGATTCTCATAA
192 CTTTGCCCTATTTTCCTTAAAATCAAAGTTTACCTCTTAAATAAGACAAGCATCGATTCTCGTAA
* * * *
47101 CAGTCTCCATTATTTTCATGAATGGGAACTAAAAACACATTCCCTTCGTTAGGATACATGACATT
257 TAGTCTCCATTATTTTCAAGATTGGGAACTAAAAACACATTCCCTTCATTAGGATACATGACATT
** * * **
47166 GATGCTTAAGTGTCGCAAGAAAAGCTTCTCTTTTCACCGTTTT--T-G-AT---A--------C-
322 GATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACATTTTTGATAGAATCAAAGTTTGCCTCT
* * *
47215 TAAATA-G--AAACATGAATAGTCATACTAATCTCCATTCTTTTC-GAGATTAGGCACCCTAAAT
387 TAAATAGGACAAACATGAATAGTCATACTAATCCCCATTCTTTTCAG-GATTAGGCACCATAAAC
47276 ATAGTATTCTCATAAGGATACGTG
451 ATAGTATTCTCATAAGGATACGTG
* ** * * *
47300 ATACTAATGCTTTGGTTTCGCAAGAAAGGC-TTTCTTGCCACCAATTTTTGTAAAGTCTAAATTT
1 ATATTGGTGTTTTGGTTTCGCAAGAAAGGCATTT-TT-CCACCAATTTTTGTAAAGTCTAAGTTC
* * * *
47364 GTGCCTC--A--AG-----TATGGATTCTAGTAATGATCTTCATTCATTTTGAGATTAGGCACTA
64 ATGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTTATTTTGTGATTAGGCACTA
* * * * *
47420 TAAACACATTCTCCTAATTAGGATAAATGTTACTGTTGATTTTCATTTGCATGGAAATCTTTTCT
129 TAAACACATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGGAAATCTTTTCT
** * *
47485 TT-CTCCTATTTTCCTTAAAATCAAAGTTTATTTCTTAAATAAGACAAGCATTGATTCTTGTAAT
194 TTGC-CCTATTTTCCTTAAAATCAAAGTTTACCTCTTAAATAAGACAAGCATCGATTCTCGTAAT
* * * * * * * *
47549 AGTCTGCATTCTTTTCAAGATTGGGATCCAAAAATACATTTCTTTCATTAGGATATATGACATTG
258 AGTCTCCATTATTTTCAAGATTGGGAACTAAAAACACATTCCCTTCATTAGGATACATGACATTG
* * * * * * *
47614 ATGCTTGGGTGTTGCTAGAAAAGCTTTTTTTTCCCCAGTTTTGATAGAATCAAAGTTTGTCTCTT
323 ATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACATTTTTGATAGAATCAAAGTTTGCCTCTT
* *
47679 AAATAAGG-CAAACATG-ATAGTCATGCTAATCCCCATTCTTTTCAGGATTATGCACCATAAACA
388 AAAT-AGGACAAACATGAATAGTCATACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACA
* * * *
47742 TAGTCTTCTGACAAGGATACATG
452 TAGTATTCTCATAAGGATACGTG
* * * * * * *
47765 TTATTGGTGATTTGGTTTCACAAGAAAGGC-TCTGTTCCCAACAATTTTTGTAAAATCTATGTTC
1 ATATTGGTGTTTTGGTTTCGCAAGAAAGGCAT-T-TTTCCACCAATTTTTGTAAAGTCTAAGTTC
* * ** * *
47829 ATGCCTCAAATGAGACAAACATTGATTCTGGTACGGATCTTC-TTTCATTTTATGGTTAGGCACT
64 ATGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTT-ATTTTGTGATTAGGCACT
* * ** * *
47893 ATAAACACATTCTCTTTAACAGGATAAAT-ATTATTGATGATTTTC-TTTGGATGGAAATCTTTC
128 ATAAACACATTCTCCTCATTAGGATAAATGA-TATTGATGATTTTCTTTTGCATGGAAATCTTTT
* * * ** * * *
47956 CTTTGTCCTATTTTCCTTAAAATTAAAGTTCATCC-AATGAATAAGACAATCATCGATCCTCGTA
192 CTTTGCCCTATTTTCCTTAAAATCAAAGTTTA-CCTCTTAAATAAGACAAGCATCGATTCTCGTA
*
48020 ATAGTCTCTATTATTTT-AAGGATTGGGAACCTAAAACACATTCTCTAACCTTAAACACATTCTC
256 ATAGTCTCCATTATTTTCAA-GATTGGGAA-CTAAAA-ACA----C--A--TT-----C---C-C
* * * *
48084 TTCATTAAGATACATGACATTGATGCTTTGGTGTCACAAG-AAAGCCTTTCTTTACACCATTTTT
301 TTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCA-CATTTTT
* ** ** * * * * * *
48148 -ATCGAATCAAAGTTTTTCTCCAAAATAAGATAGACATGAATACTCACACTAATCCCCATGCTTC
365 GATAGAATCAAAGTTTGCCTCTTAAATAGGACAAACATGAATAGTCATACTAATCCCCATTCTT-
* *
48212 TT-AGG---AGGCACCATAAACATAGTTTTCTCTTTAA-GAT-CGTG
429 TTCAGGATTAGGCACCATAAACATAGTATTCTC-ATAAGGATACGTG
* * *
48253 ATATTGATGTTTTGGTTTTGCAAGAAAGGCATTTTTCCCACTAATTTTTGTAAAGTCTAAGAGAT
1 ATATTGGTGTTTTGGTTTCGCAAGAAAGGCATTTTT-CCACCAATTTTTGTAAAGTCT-A-AG-T
* * * * * * * ** *
48318 AAACGTAG-ATAAACATG-GATAAACATGGATTCTAGTAAAGATCCTC-TTTCATTTCATCATTA
62 --TCAT-GCCTCAA-ATGAGACAAACATGGATTCTAGTAATGATCTTCATTT-ATTTTGTGATTA
** * * * * *
48380 GGCACTATCCACGCATTCTTCTCATTAGGATAAATGATATTGATGATTTTCTTTTCCATGAAAAC
122 GGCACTATAAACACATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGGAAAT
* * ** * * * *
48445 CTTTTCTTTGCCCCA-TTTCCTTATAATCAAAAATCATCC-CTTAAATAAGATAAGCAACAATTC
187 CTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTTA-CCTCTTAAATAAGACAAGCATCGATTC
* *** * * * **
48508 TCCTAATAGTCTTTGTTATTTTCAGGATTGGGAACCT-AACACATATTCCCTTCATTAAAATACA
251 TCGTAATAGTCTCCATTATTTTCAAGATTGGGAA-CTAAAAACACATTCCCTTCATTAGGATACA
* * * * **
48572 TGATATTGATGCTTTAGTGTTGCAAGAAAAGCTTTTCTTTCCACCGTTTTCAATAGAATCAAAGT
315 TGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCA-CATTTTTGATAGAATCAAAGT
* * * * *
48637 TTGACTCTTAAATAAGACAAACTTGAAGAGTCATACTAATCCCCATTCTTTTC-GAGACTAGGCA
379 TTGCCTCTTAAATAGGACAAACATGAATAGTCATACTAATCCCCATTCTTTTCAG-GATTAGGCA
* * *
48701 CCATAAACATAGTCTTCTCATTAGGATACGCG
443 CCATAAACATAGTATTCTCATAAGGATACGTG
* * * * *
48733 ATATTGGTGTTTTGCTTTTGCAAGAAA-GCATTTTTCCAACCAATTTTTATAAAGCCTAATTTCA
1 ATATTGGTGTTTTGGTTTCGCAAGAAAGGCATTTTTCC-ACCAATTTTTGTAAAGTCTAAGTTCA
* * * *
48797 TTCCTCAAACGAGACAAACATGGATTCTAGTAATGATCTTCATTCATATTGTGATTAGGCACTAT
65 TGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTTATTTTGTGATTAGGCACTAT
* *
48862 AAAGACATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGTAAATCTTTTCTT
130 AAACACATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTT
* * * *
48927 TCCCCTATTTTCCTCAAGATCAAAGTTTACCTCTTAAATAAGACAAGCATCGATTCTCTTAATAG
195 TGCCCTATTTTCCTTAAAATCAAAGTTTACCTCTTAAATAAGACAAGCATCGATTCTCGTAATAG
* * * * * * * * *
48992 TCTTCATTCTTTCCATGATTAGGAACCAAAAGCACAGTCCCTTCACTAGGATACATGACATTGAT
260 TCTCCATTATTTTCAAGATTGGGAACTAAAAACACATTCCCTTCATTAGGATACATGACATTGAT
* * * *
49057 GCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCTCCGTTTTTGATAGAATCAAAGTTTGCCTATTT
325 GCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCC-ACATTTTTGATAGAATCAAAGTTTGCCTCTTA
* * * ** * *
49122 AATAAGACAAACATGAATAGTCATACTAATCCCCATTCTTTTCGGGGTTAGGTGCCCTAAATATA
389 AATAGGACAAACATGAATAGTCATACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACATA
* * *
49187 GTCTTTTCATTAGGATACGTG
454 GTATTCTCATAAGGATACGTG
* * * *
49208 ATATTGGTGTTTTGCTTTCCCAAGAAAGGCATTTTTCCAACCAATTTTTGTAAAGCCTAAATTCA
1 ATATTGGTGTTTTGGTTTCGCAAGAAAGGCATTTTTCC-ACCAATTTTTGTAAAGTCTAAGTTCA
* * * * * *
49273 TGCCTCAAACGAGACAAACATGGATTATAGTTATGATCTTCATTCATATTGTCATTAGGCACTAT
65 TGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTTATTTTGTGATTAGGCACTAT
* **
49338 AAAGACATTCTCCTCAATT-GGGCAAATGATATTGATGATTTTCTTTTGCATGGAAATCTTTTCT
130 AAACACATTCTCCTC-ATTAGGATAAATGATATTGATGATTTTCTTTTGCATGGAAATCTTTTCT
* * *
49402 TTTCTCTATTTTCCTTAAAATCAAAGTTTACCTCTTAAATAAGACAAGCATCGATTCTCTTAATA
194 TTGCCCTATTTTCCTTAAAATCAAAGTTTACCTCTTAAATAAGACAAGCATCGATTCTCGTAATA
* * * *
49467 GTCTCCATTCTTTTCATGATTGGGAACCAAAAACACATTCCCTTCGTTAGGATACATGACATTGA
259 GTCTCCATTATTTTCAAGATTGGGAACTAAAAACACATTCCCTTCATTAGGATACATGACATTGA
* * * * *
49532 TGCTTTGGTGTCGCAAGAAAAGATTTTATTTCCTCCATTTTGGATAGAATCAAAGTTTGCCTATT
324 TGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCC-ACATTTTTGATAGAATCAAAGTTTGCCTCTT
* * * * *
49597 AAATAGGACAAACATGAATAGTTATACAAATCCCCATTCTTTTCGGGGTTAGGCACCCTAAACAT
388 AAATAGGACAAACATGAATAGTCATACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACAT
* * *
49662 AGTATTCACATTAGGATACGCG
453 AGTATTCTCATAAGGATACGTG
* * * * *
49684 A-ATTGGTGTTTTGCTTTCACAAGAAAGGCAATTTTCCAACGAA-TTTTGTAAAGCCTAAGTTCA
1 ATATTGGTGTTTTGGTTTCGCAAGAAAGGCATTTTTCC-ACCAATTTTTGTAAAGTCTAAGTTCA
* * * * *
49747 TGCCCCAAATGAGAAAAATATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAAGCACTAT
65 TGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTTATTTTGTGATTAGGCACTAT
* * * *
49812 TAAGACTTTCTCCTCATTAGGATAAATGATATTGATGA-TTTCTTTTGCATTGAAATCTTTTCTT
130 AAACACATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTT
* * *
49876 TCCCCTATTTTCCTTAAAATCAAAGTTTACCTCTTAAATAAGACAAGAATCGATTCTCGTAACAG
195 TGCCCTATTTTCCTTAAAATCAAAGTTTACCTCTTAAATAAGACAAGCATCGATTCTCGTAATAG
* * * *
49941 TCTCCATTATTTTCAGGACTGAGAACCT-AAAACACATTCCCTTCATTAGGTTACATGACATTGA
260 TCTCCATTATTTTCAAGATTGGGAA-CTAAAAACACATTCCCTTCATTAGGATACATGACATTGA
* * * * **
50005 TGCCTTGGTGTCGCAAG-AAAGTTTTTCTTTCTACCGTTTTTGA-AGGAATCAAAGTTTATCTCT
324 TGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCA-CATTTTTGATA-GAATCAAAGTTTGCCTCT
50068 TAAATAG
387 TAAATAG
50075 TCTTTGCATA
Statistics
Matches: 3095, Mismatches: 480, Indels: 254
0.81 0.13 0.07
Matches are distributed among these distances:
446 7 0.00
447 234 0.08
449 1 0.00
450 1 0.00
451 2 0.00
452 2 0.00
454 2 0.00
455 28 0.01
456 89 0.03
457 6 0.00
458 6 0.00
459 1 0.00
462 1 0.00
463 5 0.00
464 1 0.00
465 143 0.05
466 68 0.02
467 241 0.08
468 60 0.02
469 5 0.00
470 2 0.00
471 2 0.00
472 49 0.02
473 316 0.10
474 571 0.18
475 325 0.11
476 464 0.15
477 4 0.00
478 6 0.00
479 51 0.02
480 28 0.01
481 1 0.00
483 4 0.00
485 1 0.00
487 2 0.00
488 47 0.02
489 26 0.01
490 5 0.00
491 45 0.01
492 65 0.02
493 151 0.05
494 27 0.01
ACGTcount: A:0.31, C:0.18, G:0.14, T:0.36
Consensus pattern (474 bp):
ATATTGGTGTTTTGGTTTCGCAAGAAAGGCATTTTTCCACCAATTTTTGTAAAGTCTAAGTTCAT
GCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTTATTTTGTGATTAGGCACTATA
AACACATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTT
GCCCTATTTTCCTTAAAATCAAAGTTTACCTCTTAAATAAGACAAGCATCGATTCTCGTAATAGT
CTCCATTATTTTCAAGATTGGGAACTAAAAACACATTCCCTTCATTAGGATACATGACATTGATG
CTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACATTTTTGATAGAATCAAAGTTTGCCTCTTAAA
TAGGACAAACATGAATAGTCATACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACATAGT
ATTCTCATAAGGATACGTG
Found at i:48075 original size:19 final size:19
Alignment explanation
Indices: 48047--48084 Score: 67
Period size: 19 Copynumber: 2.0 Consensus size: 19
48037 AAGGATTGGG
48047 AACCTAAAACACATTCTCT
1 AACCTAAAACACATTCTCT
*
48066 AACCTTAAACACATTCTCT
1 AACCTAAAACACATTCTCT
48085 TCATTAAGAT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.39, C:0.32, G:0.00, T:0.29
Consensus pattern (19 bp):
AACCTAAAACACATTCTCT
Found at i:49113 original size:159 final size:159
Alignment explanation
Indices: 48875--49611 Score: 423
Period size: 159 Copynumber: 4.6 Consensus size: 159
48865 GACATTCTCC
* * * * * * * * *
48875 TCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGTAAATCTTTTCTTTCC-CCTATTTTC
1 TCATTAGGATACATGACATTGATGCTTTGCTGTCGCAAGAAAAGCTTTTCTTTCCTCC-ATTTT-
* * * *
48939 CTCA-AG-ATCAAAGTTTACCTCTTAAATAAGACAAGCATCGATTCTCTTAATAGTCTTCATTCT
64 -TGATAGAATCAAAGTTTGCCTCTTAAATAAGACAAACATCGATTCTCTTAATAGTCTCCATTCT
*
49002 TTCCATGATTAGGAACCAAAAGCACAGTCCCT
128 TTTCATGATTAGGAACCAAAAGCACAGTCCCT
* * *
49034 TCACTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCTCCGTTTTTG
1 TCATTAGGATACATGACATTGATGCTTTGCTGTCGCAAGAAAAGCTTTTCTTTCCTCCATTTTTG
* * ** * * * *
49099 ATAGAATCAAAGTTTGCCTATTTAATAAGACAAACAT-GAATAGTCATACTAATCCCCATTCTTT
66 ATAGAATCAAAGTTTGCCTCTTAAATAAGACAAACATCG-ATTCTCTTAATAGTCTCCATTCTTT
** * ** * * * **
49163 TCGGGGTTAGGTGCCCTAAA-TATAGTCTTT
130 TCATGATTAGG-AACCAAAAGCACAGTCCCT
* * * * * * * * *
49193 TCATTAGGATACGTGATATTGGTGTTTTGCTTTCCCAAGAAAGGC-ATT-TTTCCAACCAATTTT
1 TCATTAGGATACATGACATTGATGCTTTGCTGTCGCAAGAAAAGCTTTTCTTTCC-TCC-ATTTT
* ** * * * *
49256 TG-TA-AAGCCTAAA-TTCATGCCTC--AAACGAGACAAACATGGATTATAGTT-AT-GATCTTC
64 TGATAGAA-TC-AAAGTT--TGCCTCTTAAATAAGACAAACATCGATTCT-CTTAATAG-TCTCC
* * * * * *
49314 ATTCATATT-GTCATTAGGCACTATAAAG-ACATTCTCC-
123 ATTC-TTTTCATGATTAGGAACCA-AAAGCACAGTC-CCT
* * * * * * * * * * *
49351 TCAATTGGGCA-A-ATGATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTTCTCTATTTT
1 TC-ATTAGG-ATACATGACATTGATGCTTTGCTGTCGCAAGAAAAGCTTTTCTTTCCTCCATTTT
*** * * *
49414 CCTTAAAATCAAAGTTTACCTCTTAAATAAGACAAGCATCGATTCTCTTAATAGTCTCCATTCTT
64 TGATAGAATCAAAGTTTGCCTCTTAAATAAGACAAACATCGATTCTCTTAATAGTCTCCATTCTT
* * *
49479 TTCATGATTGGGAACCAAAAACACATTCCCT
129 TTCATGATTAGGAACCAAAAGCACAGTCCCT
* * * * *
49510 TCGTTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGATTTTATTTCCTCCATTTTGG
1 TCATTAGGATACATGACATTGATGCTTTGCTGTCGCAAGAAAAGCTTTTCTTTCCTCCATTTTTG
* *
49575 ATAGAATCAAAGTTTGCCTATTAAATAGGACAAACAT
66 ATAGAATCAAAGTTTGCCTCTTAAATAAGACAAACAT
49612 GAATAGTTAT
Statistics
Matches: 416, Mismatches: 128, Indels: 68
0.68 0.21 0.11
Matches are distributed among these distances:
157 16 0.04
158 96 0.23
159 284 0.68
160 20 0.05
ACGTcount: A:0.30, C:0.19, G:0.14, T:0.37
Consensus pattern (159 bp):
TCATTAGGATACATGACATTGATGCTTTGCTGTCGCAAGAAAAGCTTTTCTTTCCTCCATTTTTG
ATAGAATCAAAGTTTGCCTCTTAAATAAGACAAACATCGATTCTCTTAATAGTCTCCATTCTTTT
CATGATTAGGAACCAAAAGCACAGTCCCT
Found at i:49443 original size:476 final size:476
Alignment explanation
Indices: 47222--50073 Score: 2970
Period size: 476 Copynumber: 6.0 Consensus size: 476
47212 TACTAAATAG
* * *
47222 AAACATGAATAGTCATACTAATCTCCATTCTTTTCGAGATTAGGCACCCTAAATATAGTATTCTC
1 AAACATGAATAGTCATACTAATCCCCATTCTTTTCGAGATTAGGCACCCTAAACATAGTCTTCTC
* * ** * *
47287 ATAAGGATACGTGATACTAATGCTTTGGTTTCGCAAGAAAGGC-TTTCTTGCC-ACCAATTTTTG
66 ATTAGGATACGTGATATTGGTGTTTTGCTTTCGCAAGAAAGGCATTT-TT-CCAACCAATTTTTG
* ** *
47350 TAAAGTCTAAATTTGTGCCTC--A--AG-----TATGGATTCTAGTAATGATCTTCATTCATTTT
129 TAAAGCCTAAATTCATGCCTCAAACGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTT
* * * * * * *
47406 GAGATTAGGCACTATAAACACATTCTCCTAATTAGGATAAATGTTACTGTTGATTTTCATTTGCA
194 GTGATTAGGCACTATAAAGACATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCA
**
47471 TGGAAATCTTTTC-TTTCTCCTATTTTCCTTAAAATCAAAGTTTATTTCTTAAATAAGACAAGCA
259 TGGAAATCTTTTCTTTTC-CCTATTTTCCTTAAAATCAAAGTTTACCTCTTAAATAAGACAAGCA
* * * * * * * * *
47535 TTGATTCT-TGTAATAGTCTGCATTCTTTTCAAGATTGGGATCCAAAAATACATTTCTTTCATTA
323 TCGATTCTCT-TAATAGTCTTCATTATTTTCAGGATTGGGAACCTAAAACACATTCCCTTCATTA
* * * * *
47599 GGATATATGACATTGATGCTTGGGTGTTGCTAGAAAAGCTTTTTTTTCC-CCAG-TTTTGATAGA
387 GGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCTCC-GTTTTTGATAGA
* *
47662 ATCAAAGTTTGTCTCTTAAATAAGGC
451 ATCAAAGTTTGCCTCTTAAATAAGAC
* * *
47688 AAACATG-ATAGTCATGCTAATCCCCATTCTTTTC-AGGATTATGCACCATAAACATAGTCTTCT
1 AAACATGAATAGTCATACTAATCCCCATTCTTTTCGA-GATTAGGCACCCTAAACATAGTCTTCT
* ** * * * * * *
47751 GACAAGGATACATGTTATTGGTGATTTGGTTTCACAAGAAAGGC-TCTGTTCCCAA-CAATTTTT
65 CATTAGGATACGTGATATTGGTGTTTTGCTTTCGCAAGAAAGGCAT-T-TTTCCAACCAATTTTT
** ** * * * ** *
47814 GTAAAATCTATGTTCATGCCTCAAATGAGACAAACATTGATTCTGGTACGGATCTTCTTTCATTT
128 GTAAAGCCTAAATTCATGCCTCAAACGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTT
* * * * * **
47879 TATGGTTAGGCACTATAAACACATTCTCTTTAACAGGATAAAT-ATTATTGATGATTTTC-TTTG
193 TGTGATTAGGCACTATAAAGACATTCTCCTCATTAGGATAAATGA-TATTGATGATTTTCTTTTG
* * * * ** *
47942 GATGGAAATCTTTCCTTTGT-CCTATTTTCCTTAAAATTAAAGTTCATCC-AATGAATAAGACAA
257 CATGGAAATCTTTTCTTT-TCCCTATTTTCCTTAAAATCAAAGTTTA-CCTCTTAAATAAGACAA
* * * *
48005 TCATCGATCCTCGTAATAGTC-TCTATTATTTTAAGGATTGGGAACCTAAAACACATTCTCTAAC
320 GCATCGATTCTCTTAATAGTCTTC-ATTATTTTCAGGATTGGGAACCT-AAA-ACA----C--A-
* * *
48069 CTTAAACACATTCTCTTCATTAAGATACATGACATTGATGCTTTGGTGTCACAAG-AAAGCCTTT
375 -TT-----C---C-CTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTT
* * * * ** ** *
48133 CTTTACACCATTTTT-ATCGAATCAAAGTTTTTCTCCAAAATAAGAT
430 CTTTCCTCCGTTTTTGATAGAATCAAAGTTTGCCTCTTAAATAAGAC
* * * * * * *
48179 AGACATGAATACTCACACTAATCCCCATGCTTCTT--AG--GAGGCACCATAAACATAGTTTTCT
1 AAACATGAATAGTCATACTAATCCCCATTCTT-TTCGAGATTAGGCACCCTAAACATAGTCTTCT
* * * * * * *
48240 CTTTAAGAT-CGTGATATTGATGTTTTGGTTTTGCAAGAAAGGCATTTTTCCCACTAATTTTTGT
65 CATTAGGATACGTGATATTGGTGTTTTGCTTTCGCAAGAAAGGCATTTTTCCAACCAATTTTTGT
* * * * * * * *
48304 AAAGTCTAAGAGATAAACGTAG-AT-AAAC-ATGGATAAACATGGATTCTAGTAAAGATCCTCTT
130 AAAGCCT-A-A-AT--TCAT-GCCTCAAACGA--GACAAACATGGATTCTAGTAATGATCTTCAT
** * * * *
48366 TCATTTCATCATTAGGCACTATCCACG-CATTCTTCTCATTAGGATAAATGATATTGATGATTTT
187 TCATTTTGTGATTAGGCACTAT-AAAGACATTCTCCTCATTAGGATAAATGATATTGATGATTTT
* * * * * * ** *
48430 CTTTTCCATGAAAACCTTTTCTTTGCCCCA-TTTCCTTATAATCAAAAATCATCC-CTTAAATAA
251 CTTTTGCATGGAAATCTTTTCTTTTCCCTATTTTCCTTAAAATCAAAGTTTA-CCTCTTAAATAA
* * * * ** * *
48493 GATAAGCAACAATTCTCCTAATAGTCTTTGTTATTTTCAGGATTGGGAACCTAACACATATTCCC
315 GACAAGCATCGATTCTCTTAATAGTCTTCATTATTTTCAGGATTGGGAACCTAAAACACATTCCC
** * * * * *
48558 TTCATTAAAATACATGATATTGATGCTTTAGTGTTGCAAGAAAAGCTTTTCTTTCCACCGTTTTC
380 TTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCTCCGTTTTT
* *
48623 AATAGAATCAAAGTTTGACTCTTAAATAAGAC
445 GATAGAATCAAAGTTTGCCTCTTAAATAAGAC
* * * *
48655 AAACTTGAAGAGTCATACTAATCCCCATTCTTTTCGAGACTAGGCACCATAAACATAGTCTTCTC
1 AAACATGAATAGTCATACTAATCCCCATTCTTTTCGAGATTAGGCACCCTAAACATAGTCTTCTC
* * *
48720 ATTAGGATACGCGATATTGGTGTTTTGCTTTTGCAAGAAA-GCATTTTTCCAACCAATTTTTATA
66 ATTAGGATACGTGATATTGGTGTTTTGCTTTCGCAAGAAAGGCATTTTTCCAACCAATTTTTGTA
* * *
48784 AAGCCTAATTTCATTCCTCAAACGAGACAAACATGGATTCTAGTAATGATCTTCATTCATATTGT
131 AAGCCTAAATTCATGCCTCAAACGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGT
48849 GATTAGGCACTATAAAGACATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATG
196 GATTAGGCACTATAAAGACATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATG
* * * *
48914 TAAATCTTTTCTTTCCCCTATTTTCCTCAAGATCAAAGTTTACCTCTTAAATAAGACAAGCATCG
261 GAAATCTTTTCTTTTCCCTATTTTCCTTAAAATCAAAGTTTACCTCTTAAATAAGACAAGCATCG
* * * * * *
48979 ATTCTCTTAATAGTCTTCATTCTTTCCATGATTAGGAACC-AAAAGCACAGTCCCTTCACTAGGA
326 ATTCTCTTAATAGTCTTCATTATTTTCAGGATTGGGAACCTAAAA-CACATTCCCTTCATTAGGA
49043 TACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCTCCGTTTTTGATAGAATCA
390 TACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCTCCGTTTTTGATAGAATCA
* *
49108 AAGTTTGCCTATTTAATAAGAC
455 AAGTTTGCCTCTTAAATAAGAC
* * ** * *
49130 AAACATGAATAGTCATACTAATCCCCATTCTTTTCGGGGTTAGGTGCCCTAAATATAGTCTTTTC
1 AAACATGAATAGTCATACTAATCCCCATTCTTTTCGAGATTAGGCACCCTAAACATAGTCTTCTC
*
49195 ATTAGGATACGTGATATTGGTGTTTTGCTTTCCCAAGAAAGGCATTTTTCCAACCAATTTTTGTA
66 ATTAGGATACGTGATATTGGTGTTTTGCTTTCGCAAGAAAGGCATTTTTCCAACCAATTTTTGTA
* * *
49260 AAGCCTAAATTCATGCCTCAAACGAGACAAACATGGATTATAGTTATGATCTTCATTCATATTGT
131 AAGCCTAAATTCATGCCTCAAACGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGT
* **
49325 CATTAGGCACTATAAAGACATTCTCCTCAATT-GGGCAAATGATATTGATGATTTTCTTTTGCAT
196 GATTAGGCACTATAAAGACATTCTCCTC-ATTAGGATAAATGATATTGATGATTTTCTTTTGCAT
*
49389 GGAAATCTTTTCTTTTCTCTATTTTCCTTAAAATCAAAGTTTACCTCTTAAATAAGACAAGCATC
260 GGAAATCTTTTCTTTTCCCTATTTTCCTTAAAATCAAAGTTTACCTCTTAAATAAGACAAGCATC
* * * * *
49454 GATTCTCTTAATAGTCTCCATTCTTTTCATGATTGGGAACCAAAAACACATTCCCTTCGTTAGGA
325 GATTCTCTTAATAGTCTTCATTATTTTCAGGATTGGGAACCTAAAACACATTCCCTTCATTAGGA
* * * *
49519 TACATGACATTGATGCTTTGGTGTCGCAAGAAAAGATTTTATTTCCTCCATTTTGGATAGAATCA
390 TACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCTCCGTTTTTGATAGAATCA
* *
49584 AAGTTTGCCTATTAAATAGGAC
455 AAGTTTGCCTCTTAAATAAGAC
* * * * * *
49606 AAACATGAATAGTTATACAAATCCCCATTCTTTTCGGGGTTAGGCACCCTAAACATAGTATTCAC
1 AAACATGAATAGTCATACTAATCCCCATTCTTTTCGAGATTAGGCACCCTAAACATAGTCTTCTC
* * * *
49671 ATTAGGATACGCGA-ATTGGTGTTTTGCTTTCACAAGAAAGGCAATTTTCCAACGAA-TTTTGTA
66 ATTAGGATACGTGATATTGGTGTTTTGCTTTCGCAAGAAAGGCATTTTTCCAACCAATTTTTGTA
* * * * *
49734 AAGCCTAAGTTCATGCCCCAAATGAGAAAAATATGGATTCTAGTAATGATCTTCATTCATTTTGT
131 AAGCCTAAATTCATGCCTCAAACGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGT
* * * *
49799 GATTAAGCACTATTAAGACTTTCTCCTCATTAGGATAAATGATATTGATGA-TTTCTTTTGCATT
196 GATTAGGCACTATAAAGACATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATG
* *
49863 GAAATCTTTTCTTTCCCCTATTTTCCTTAAAATCAAAGTTTACCTCTTAAATAAGACAAGAATCG
261 GAAATCTTTTCTTTTCCCTATTTTCCTTAAAATCAAAGTTTACCTCTTAAATAAGACAAGCATCG
* * * * * *
49928 ATTCTCGTAACAGTCTCCATTATTTTCAGGACTGAGAACCTAAAACACATTCCCTTCATTAGGTT
326 ATTCTCTTAATAGTCTTCATTATTTTCAGGATTGGGAACCTAAAACACATTCCCTTCATTAGGAT
* *
49993 ACATGACATTGATGCCTTGGTGTCGCAAG-AAAGTTTTTCTTT-CTACCGTTTTTGA-AGGAATC
391 ACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCT-CCGTTTTTGATA-GAATC
**
50055 AAAGTTTATCTCTTAAATA
454 AAAGTTTGCCTCTTAAATA
50074 GTCTTTGCAT
Statistics
Matches: 1994, Mismatches: 315, Indels: 148
0.81 0.13 0.06
Matches are distributed among these distances:
464 1 0.00
465 111 0.06
466 10 0.01
467 2 0.00
469 2 0.00
471 3 0.00
472 41 0.02
473 249 0.12
474 333 0.17
475 318 0.16
476 459 0.23
477 10 0.01
478 2 0.00
479 56 0.03
480 28 0.01
481 1 0.00
483 4 0.00
485 1 0.00
487 5 0.00
488 44 0.02
489 27 0.01
491 50 0.03
492 66 0.03
493 147 0.07
494 24 0.01
ACGTcount: A:0.31, C:0.19, G:0.14, T:0.36
Consensus pattern (476 bp):
AAACATGAATAGTCATACTAATCCCCATTCTTTTCGAGATTAGGCACCCTAAACATAGTCTTCTC
ATTAGGATACGTGATATTGGTGTTTTGCTTTCGCAAGAAAGGCATTTTTCCAACCAATTTTTGTA
AAGCCTAAATTCATGCCTCAAACGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGT
GATTAGGCACTATAAAGACATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATG
GAAATCTTTTCTTTTCCCTATTTTCCTTAAAATCAAAGTTTACCTCTTAAATAAGACAAGCATCG
ATTCTCTTAATAGTCTTCATTATTTTCAGGATTGGGAACCTAAAACACATTCCCTTCATTAGGAT
ACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCTCCGTTTTTGATAGAATCAA
AGTTTGCCTCTTAAATAAGAC
Found at i:52670 original size:474 final size:475
Alignment explanation
Indices: 50071--54373 Score: 4695
Period size: 474 Copynumber: 9.1 Consensus size: 475
50061 TATCTCTTAA
* * * *
50071 ATAGTCTT-TGCATAAGGATACACAATATTGATGGTTTGGTTTCACAAGAAAGGGTTTCTTCCCA
1 ATAGTCTTCT-CATAAGGATACACGATATTGATGCTTTGGTTTCGCAAGAAAGGCTTTCTTCCCA
* * * * * * *
50135 ACAATTTATGTAAAGTCTAAGTTCGTGCATCAAATGAAACAAACATGGATTCTAGTAATCATCTC
65 CCAATTTTTGTAAAGTCTAAGTTTGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTT
* * *
50200 CATTAATTTTGTGATTACGCACTATAAACACATTCTCCTCA-TAGGATAAATGTTATTGATGATT
130 CATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGATATTGATGATT
* * * * * * *
50264 TTTTTTTGCATGGAAATCTTTCCTTTTCTTTATTTTCCCTAAAATCAAAGTTCATCACGTAACTA
195 TTCTTTTGCATGGAAATCTTT-CTTTGCTCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATA
* * * * * * *
50329 AGATAAGCATAGATTCTCATAACAGTCTCCATTATTTTAAGGATTGGGAACCCAAAACACAATCT
259 AGACAAGCATCGATTCTCATAATAGTCTCCATTATTTTCAGGATTGGGAACCTAAAACACATTCC
* * * * *
50394 CTTCATTAGGTTACAGGACAGTGATGCTTTGGTGTCACAAGAAAAGCTTTTCTTTCCACCGTTTT
324 CTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCATTTT
* * * ** *
50459 TGATAGAATCGAAGTCTGCCTCATAAATAAGACAAACATGAATACACATACTAATCCTCATTCTT
389 TGATAGAATCAAAGTTTGCCTCTTAAATAAGACAAACATGAATAGTCATACTAATCCCCATTCTT
* ** *
50524 TTCGGGATTAGGCATGAAAAAAC
454 TTCGAGATTAGGCA-CCATAAAC
** * *
50547 ATAGTCTTCTC--------ACACGATATTGATGCTTTGGTTTCATAAGAAAGGGTTTTTTCCCAC
1 ATAGTCTTCTCATAAGGATACACGATATTGATGCTTTGGTTTCGCAAGAAAGGCTTTCTTCCCAC
* * *
50604 CAATTTATGTAAAGTCTAAGTCTGTGCATCAAATGAGACAAACATGGATTCTAGTAATGATC-TC
66 CAATTTTTGTAAAGTCTAAGTTTGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTC
* *
50668 TATCCATTTTGTGATTAAGCACTATAAACACATTCTCCTCATTAGGATAAATGATATTGATGATT
131 -ATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGATATTGATGATT
* * ** * *
50733 TT-TTTT-TATGGAAATCTTTCTTT-TTCCTTATTTTCCTTAAAATCAAAGTTCATTACATAACT
195 TTCTTTTGCATGGAAATCTTTCTTTGCT-C-TATTTTCCTTAAAATCAAAGTTCATCCCTTAAAT
* * * * * * *
50795 AAGACAAGCATAGATTCTCGTAACAGTCTCCATTATTTTCAGGATTAGCAACCTAAAACAAAATC
258 AAGACAAGCATCGATTCTCATAATAGTCTCCATTATTTTCAGGATTGGGAACCTAAAACACATTC
* * * *
50860 CTTTCATTAGGTTACATGACATTGATGCTTTGCTGTCGCAAGAAAAGCTTTTCTTTCCACCGTTT
323 CCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCATTT
* * * ** *
50925 TTGATAAAATCGAAGTCTGCCTCTTAAATAAGACAAACATGAATACACATACTAATCCTCATTTT
388 TTGATAGAATCAAAGTTTGCCTCTTAAATAAGACAAACATGAATAGTCATACTAATCCCCA--TT
* * * *
50990 TTTTTGGGGATTAGGCACGATAAAAC
451 CTTTTCGAGATTAGGCACCAT-AAAC
* * * * * * *
51016 ATAGTTTTCTCACAAGGATACACGATACTGATGCTTTGGTTTCGTAAGAAAGGGTTTTTTCCTAC
1 ATAGTCTTCTCATAAGGATACACGATATTGATGCTTTGGTTTCGCAAGAAAGGCTTTCTTCCCAC
* * *** * *
51081 CAATTTATGTAAAGTCGAAGTCCATGCATCAAATGAGACAAGCATGGATTCTAGTAATGATCTTC
66 CAATTTTTGTAAAGTCTAAGTTTGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTC
* *
51146 ATTCATATTGTGATTAGGCACTATAAAGACATTCTCCTCATTAGGATAAATGATATTGATGATTT
131 ATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGATATTGATGATTT
* * * *
51211 TCTTTTGCATGTAAATCTTTTCTTT-CCCTTATTTTCCTCAAAATCAAAGTTTA-CCTCTTAAAT
196 TCTTTTGCATGGAAATC-TTTCTTTGCTC-TATTTTCCTTAAAATCAAAGTTCATCC-CTTAAAT
* * *
51274 AAGACAAGCATCGATTCTCTTAATAGTCTCCATTCTTTTCATGATTGGGAACC-AAAAGCACATT
258 AAGACAAGCATCGATTCTCATAATAGTCTCCATTATTTTCAGGATTGGGAACCTAAAA-CACA--
51338 CCCTTTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCC
320 ----TTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCC
** * * * *
51403 ACTGTTTTTGATAGAATCAAAGTTTGCCTTTTAAATAGGACAAACATTAATAGTCGTACTAATCC
381 ACCATTTTTGATAGAATCAAAGTTTGCCTCTTAAATAAGACAAACATGAATAGTCATACTAATCC
* *
51468 CTATTCTTTTC-AGGATTAGGCACCCTAAAC
446 CCATTCTTTTCGA-GATTAGGCACCATAAAC
* * * ****
51498 ATTA-TATTCTCATAAGGATACACGACACTGATGCTTTGGTTTCGCAAG--AGGCTTTCTTGTGG
1 A-TAGTCTTCTCATAAGGATACACGATATTGATGCTTTGGTTTCGCAAGAAAGGCTTTCTTCCCA
* * * *
51560 CAAATTTTTGTAAAGTCTAAGTTTGTGCCTTAAATGAGACAAAATATGGATTTTAGTAATGATCT
65 CCAATTTTTGTAAAGTCTAAGTTTGTGCCTCAAATGAGAC-AAACATGGATTCTAGTAATGATCT
* * * * *
51625 TCATTAATTTTGTGTTTAGGCACTATAAACACATTC-CCATCATTAAGATAAAAT-ATGTTAATG
129 TCATTCATTTTGTGATTAGGCACTATAAACACATTCTCC-TCATTAGGAT-AAATGATATTGATG
* * * *
51688 ATTTTC-TTTG-ATGGAAATCTGTTCTCTACTCTATTTTCCTTAAAATCCAAAGTTCATCTCATA
192 ATTTTCTTTTGCATGGAAATCT-TTCTTTGCTCTATTTTCCTTAAAAT-CAAAGTTCATCCCTTA
* * * * *
51751 AATAAGACAAGCATCGATTCTCATAACAATCTCCATTATATTAAGGATTGGGAACTTAAAACACA
255 AATAAGACAAGCATCGATTCTCATAATAGTCTCCATTATTTTCAGGATTGGGAACCTAAAACACA
* * * * *
51816 TTCCCTTTATTAGGATACATGACATTGAAGCTTTGGTGTTGTAAGAAAAGC--TTCTTCCCACCA
320 TTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCA
* * * * * *
51879 TTTTTGATGGAATCAAAGTTTGTCTCTTAAATAAGATAGATATGAATACTCATACTAATCCCCAT
385 TTTTTGATAGAATCAAAGTTTGCCTCTTAAATAAGACAAACATGAATAGTCATACTAATCCCCAT
*
51944 TCTTTTCAAGATTAGGCACCATAAAC
450 TCTTTTCGAGATTAGGCACCATAAAC
* * * * *
51970 ATAGTCTTCTCTTTAA-AATATACGATATTGATGCTTTAGTTTCACAAGAAAGGCATTT-TT-CC
1 ATAGTCTTCTC-ATAAGGATACACGATATTGATGCTTTGGTTTCGCAAGAAAGGC-TTTCTTCCC
* * * *
52032 ACCAATTTTTGTAAAGTCTAAGTTTGTGCCTCGAATGAGACAAACACGTATTCTAGTAATGATCC
64 ACCAATTTTTGTAAAGTCTAAGTTTGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCT
* ** * * *
52097 TCTTTCATTTCATGATTAGGCACTATAAACACATTCTCCTCCTTAGGATAAATGTTATTGAAGAT
129 TCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGATATTGATGAT
* * * **
52162 TTTCTTTTGCATGAAAATCTTTTCTTTGCTCTA-TTTCCTTATAATAAAAAATCATCCCTTAAAT
194 TTTCTTTTGCATGGAAATC-TTTCTTTGCTCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAAT
* * * ** **** * *
52226 AAGACAAGAATCAACTCTCCCAATAGTCTTTGCTATTTTCAGGATTGAGAACCTAACACACATTC
258 AAGACAAGCATCGATTCTCATAATAGTCTCCATTATTTTCAGGATTGGGAACCTAAAACACATTC
** *
52291 CCTTCATTAAAATACATGACATTGATGCTTTGGTGTTGCAAGAAAAGCTTTTCTTTCCACCATTT
323 CCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCATTT
* * ** * *
52356 CTGATAGAAACAAAGTTTATCTCTTAAATAAGACAAACTTGAATAGTCATACTAATTCCCATTCT
388 TTGATAGAATCAAAGTTTGCCTCTTAAATAAGACAAACATGAATAGTCATACTAATCCCCATTCT
* *
52421 TTTCGAGACTAAGCACCATAAAC
453 TTTCGAGATTAGGCACCATAAAC
* * * *
52444 ATAGTCTTCTCATTAGGATACACGATATTGATGCTTTGGTTTTGCAAGAAAGGCTTACTTGCCAC
1 ATAGTCTTCTCATAAGGATACACGATATTGATGCTTTGGTTTCGCAAGAAAGGCTTTCTTCCCAC
* * * *
52509 CAATTTTTGTAAAGTATAAGTTTGTGCCTCAAATAAGACAAATATAGATTCTAGTAATGATCTTC
66 CAATTTTTGTAAAGTCTAAGTTTGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTC
* * * * *
52574 ATTCATTTTGTTATTAGGCACTATAAATACATTCTCCTCATTAGGATAAAAGATGTTAATGATTT
131 ATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGATATTGATGATTT
* * * *
52639 TCCTTTG-ATGGAAATCTATTCTCTACTCTATTTTCCTTAAAATCAAAGTTCATCCCATAAATAA
196 TCTTTTGCATGGAAATCT-TTCTTTGCTCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAA
* * *
52703 GACAAGTATCGATTCTCATAATAGTCTCCATTATTTTCAGGATTGGGAACCTAAAACACATTTCT
260 GACAAGCATCGATTCTCATAATAGTCTCCATTATTTTCAGGATTGGGAACCTAAAACACATTCCC
* * * ** *
52768 TTCATCAAGTTACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTT-CTGCGTTTTT
325 TTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCATTTTT
** * * * * *
52832 GATAGAATCAAAGTCCGCATTTTAAATAGGATAAACATGAATAGTCATACTAGTCCCCATTCTTT
390 GATAGAATCAAAGTTTGCCTCTTAAATAAGACAAACATGAATAGTCATACTAATCCCCATTCTTT
*
52897 TC-AGGATTAGGCACCACAAAC
455 TCGA-GATTAGGCACCATAAAC
* ** * *
52918 ATAGTCTTCTCATTAGGATATGCAATATTGATGTTTTGGTTTCGCAAGAAAGGCTTTCTTCCCAC
1 ATAGTCTTCTCATAAGGATACACGATATTGATGCTTTGGTTTCGCAAGAAAGGCTTTCTTCCCAC
* * * *
52983 CAATTTTTGTAAAGTCTAAGTTCGTACCTCAAATGAGACAAATATGGATTCTTGTAATGATCTTC
66 CAATTTTTGTAAAGTCTAAGTTTGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTC
* * * * *
53048 ATTTATTTTGTGATTAGGGACTCTAAATACATTCT-CTCCATTAGGATAAATGATATTAATGATT
131 ATTCATTTTGTGATTAGGCACTATAAACACATTCTCCT-CATTAGGATAAATGATATTGATGATT
* ** * * * * **
53112 TTCTTCTGTGTGGAAATCATTTCTTTCCCCTATTTTCCTTAAAATCAAATTTTATCTTTTAAATA
195 TTCTTTTGCATGGAAATC-TTTCTTTGCTCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATA
* * * * * **
53177 AGACAAGCATTGATTCTCGTAACAGTCTCAATTATTTTCATGATTGGGAACAAAAAACACATTCC
259 AGACAAGCATCGATTCTCATAATAGTCTCCATTATTTTCAGGATTGGGAACCTAAAACACATTCC
* * * ** **
53242 CTTCGTTAGGATACATGACATTGATTCTTTTGAATCGCAAGAAAAGCTTTTCTTTCTGCCA---T
324 CTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCATTTT
* * * *
53304 T-ATTG-AT-----TTT-CCTATTAAATAGGACAAACATGAATACTCATA-TCAATCCCCATTCT
389 TGATAGAATCAAAGTTTGCCTCTTAAATAAGACAAACATGAATAGTCATACT-AATCCCCATTC-
* * * *
53360 TTTTTG-GATAACGCACCCTAAAC
452 TTTTCGAGATTAGGCACCATAAAC
* * * * * * *
53383 ATAGTATTCTCATAAGGATACACAATACTGATGCTTTGGTTTCGCAAAAAAGGTTTTTTTGCCAC
1 ATAGTCTTCTCATAAGGATACACGATATTGATGCTTTGGTTTCGCAAGAAAGGCTTTCTTCCCAC
* * * *
53448 CAATTTTTATAAAGTC-ATGTTTGTGCCTCAAATGAGACAAATATGGATTCTGGTAATGATCTTC
66 CAATTTTTGTAAAGTCTAAGTTTGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTC
* *
53512 ATTCATTTTCTGA-TAGGCACTGTAAACACATTCTCCTCATTAGGATAAATGATATTGATGATTT
131 ATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGATATTGATGA---
* * * *
53576 TTTTTTTTTTGCATGGAAATCGTTTCTTTGCCCTATTTTCGTTAAAATCAAAGTTCATACCTTAA
193 -TTTTCTTTTGCATGGAAATC-TTTCTTTGCTCTATTTTCCTTAAAATCAAAGTTCATCCCTTAA
*
53641 ATAAGACAAGCATCGATTCTCATAATGGTCTCCATTATTTTCAGGATTGGGAACCTAAAACACAT
256 ATAAGACAAGCATCGATTCTCATAATAGTCTCCATTATTTTCAGGATTGGGAACCTAAAACACAT
* * * *
53706 TCCCTTCATTAAGATGCATGACATTGATGCTTTGGTGTTGCAAGAAAAGCTTTT-TTTCCCCCAT
321 TCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCAT
* * *
53770 TTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGATAAACTTGAATAGTCATACTAATCCCCATT
386 TTTTGATAGAATCAAAGTTTGCCTCTTAAATAAGACAAACATGAATAGTCATACTAATCCCCATT
* *
53835 CTTTTCGAGACTAGGCACAATAAAC
451 CTTTTCGAGATTAGGCACCATAAAC
* * * * * * * *
53860 ATAGTCTTCGCATTAGGATACACGATATTAGA-GTTTTGCTTTTGCAAAAAAAGCATTT-TTCCA
1 ATAGTCTTCTCATAAGGATACACGATATT-GATGCTTTGGTTTCGCAAGAAAGGC-TTTCTTCCC
* * ** *
53923 ACCAAGTTTTGTAAAGCCTAAGTTCATGCCTCAAATGAGACAAACATGGATTCTAGTAGTGATCT
64 ACCAATTTTTGTAAAGTCTAAGTTTGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCT
* * *
53988 TCATTTATTTTGTGATTAGGCACTATAAAGACATTCTCCTCATTAGGATAAATGATATTGATGAA
129 TCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGATATTGATGAT
* * * * * *
54053 TATCTTTTACATGGAAAACGTTTCTTTGCACTATTTTCCTTAAAATCAAAGTTCATACCTGAAAA
194 TTTCTTTTGCATGGAAATC-TTTCTTTGCTCTATTTTCCTTAAAATCAAAGTTCATCCCT-TAAA
* * * * * * * * * * *
54118 AAAAACAAGCATCGATTCTCGTAATAGTCTCTAGTCTTTTCAAGTTTGGGAACCAAAAACGCATA
257 TAAGACAAGCATCGATTCTCATAATAGTCTCCATTATTTTCAGGATTGGGAACCTAAAACACATT
* *
54183 CCCTTCATTAGGATACATGATATTGATGCTTTGGTGTTC-CAAGAAATGCTTTTCTTTCCACCAT
322 CCCTTCATTAGGATACATGACATTGATGCTTTGGTG-TCGCAAGAAAAGCTTTTCTTTCCACCAT
* ** * * * * *
54247 TTTTGGTAGACCCAATGTGTTGCCTCTAAAATAGGACAAACAAGATTAGTCATACTAATCCCCAT
386 TTTTGATAGAATCAAAGT-TTGCCTCTTAAATAAGACAAACATGAATAGTCATACTAATCCCCAT
* * *
54312 TCATTTCGGGATTAGGCA-C-TACAC
450 TCTTTTCGAGATTAGGCACCATAAAC
* * * *
54336 ATTGTATTCTCATAAGGAAACATGATATTGATGCTTTG
1 ATAGTCTTCTCATAAGGATACACGATATTGATGCTTTG
54374 TGAAAGCTTA
Statistics
Matches: 3234, Mismatches: 502, Indels: 182
0.83 0.13 0.05
Matches are distributed among these distances:
463 41 0.01
464 58 0.02
465 122 0.04
466 16 0.00
467 375 0.12
468 141 0.04
469 57 0.02
470 3 0.00
471 10 0.00
472 297 0.09
473 68 0.02
474 477 0.15
475 458 0.14
476 153 0.05
477 296 0.09
478 124 0.04
479 159 0.05
480 118 0.04
481 80 0.02
482 49 0.02
483 19 0.01
485 113 0.03
ACGTcount: A:0.32, C:0.18, G:0.14, T:0.36
Consensus pattern (475 bp):
ATAGTCTTCTCATAAGGATACACGATATTGATGCTTTGGTTTCGCAAGAAAGGCTTTCTTCCCAC
CAATTTTTGTAAAGTCTAAGTTTGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTC
ATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGATATTGATGATTT
TCTTTTGCATGGAAATCTTTCTTTGCTCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAG
ACAAGCATCGATTCTCATAATAGTCTCCATTATTTTCAGGATTGGGAACCTAAAACACATTCCCT
TCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCATTTTTG
ATAGAATCAAAGTTTGCCTCTTAAATAAGACAAACATGAATAGTCATACTAATCCCCATTCTTTT
CGAGATTAGGCACCATAAAC
Found at i:55168 original size:13 final size:13
Alignment explanation
Indices: 55150--55175 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
55140 CATTTTTTGG
55150 TGTATCGATACAT
1 TGTATCGATACAT
55163 TGTATCGATACAT
1 TGTATCGATACAT
55176 ACTTTGTGTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:55190 original size:32 final size:33
Alignment explanation
Indices: 55130--55193 Score: 103
Period size: 33 Copynumber: 2.0 Consensus size: 33
55120 TACAAGCTAA
**
55130 TGTATCGATACATTTTTTGGTGTATCGATACAT
1 TGTATCGATACATACTTTGGTGTATCGATACAT
55163 TGTATCGATACATACTTT-GTGTATCGATACA
1 TGTATCGATACATACTTTGGTGTATCGATACA
55194 AGTTTGGCTA
Statistics
Matches: 29, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
32 13 0.45
33 16 0.55
ACGTcount: A:0.27, C:0.14, G:0.17, T:0.42
Consensus pattern (33 bp):
TGTATCGATACATACTTTGGTGTATCGATACAT
Found at i:57650 original size:13 final size:13
Alignment explanation
Indices: 57632--57670 Score: 69
Period size: 13 Copynumber: 3.0 Consensus size: 13
57622 ATAAACCCTC
*
57632 TGTATCGATACAG
1 TGTATCGATACAA
57645 TGTATCGATACAA
1 TGTATCGATACAA
57658 TGTATCGATACAA
1 TGTATCGATACAA
57671 AGAAAGATGT
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
13 25 1.00
ACGTcount: A:0.36, C:0.15, G:0.18, T:0.31
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:64657 original size:42 final size:42
Alignment explanation
Indices: 64535--64657 Score: 133
Period size: 42 Copynumber: 2.9 Consensus size: 42
64525 AAGAGAAAGA
* *
64535 AGAGAGAGGAGGGATGATAGGAGGAGAGACAGAAG-AGATAGT
1 AGAGAGAGGAGGGATGATAGGAGGAG-GAGAGAAGAAGATAAT
* * * * * *
64577 ACAGATAAGAGGGATGATAGAAGGA-GAGATAGGAAAGATAAT
1 AGAGAGAGGAGGGATGATAGGAGGAGGAGAGAAG-AAGATAAT
*
64619 AGAGAGAGGAGGGATGACAGGAGGAGGAGAGAAGAAGAT
1 AGAGAGAGGAGGGATGATAGGAGGAGGAGAGAAGAAGAT
64658 GGAAGAGTGA
Statistics
Matches: 63, Mismatches: 15, Indels: 6
0.75 0.18 0.07
Matches are distributed among these distances:
40 5 0.08
42 52 0.83
43 6 0.10
ACGTcount: A:0.46, C:0.02, G:0.42, T:0.10
Consensus pattern (42 bp):
AGAGAGAGGAGGGATGATAGGAGGAGGAGAGAAGAAGATAAT
Found at i:72950 original size:42 final size:42
Alignment explanation
Indices: 72895--73013 Score: 184
Period size: 42 Copynumber: 2.8 Consensus size: 42
72885 TTCTTCTCTC
* *
72895 CTCCTCCTGTCATCCCTCCTCTCTCTATTATCTCTCCTGTCT
1 CTCCTCCTATCATCCCTCCTCTCTCTACTATCTCTCCTGTCT
*
72937 CTCCTCCTATCATCCCTCCTATCTCTACTATCTCTCCTGTCT
1 CTCCTCCTATCATCCCTCCTCTCTCTACTATCTCTCCTGTCT
* * *
72979 CCCCTCCTATCATCCCTCCTCTCTCTTCTTTCTCT
1 CTCCTCCTATCATCCCTCCTCTCTCTACTATCTCT
73014 TTAAGGGCTA
Statistics
Matches: 70, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
42 70 1.00
ACGTcount: A:0.08, C:0.47, G:0.03, T:0.42
Consensus pattern (42 bp):
CTCCTCCTATCATCCCTCCTCTCTCTACTATCTCTCCTGTCT
Found at i:72954 original size:12 final size:11
Alignment explanation
Indices: 72928--73003 Score: 52
Period size: 12 Copynumber: 6.9 Consensus size: 11
72918 TCTATTATCT
*
72928 CTCCTGTCTCTC
1 CTCCTATCTC-C
72940 CTCCTATCATCC
1 CTCCTATC-TCC
72952 CTCCTATCT--
1 CTCCTATCTCC
*
72961 CTACTATCT--
1 CTCCTATCTCC
*
72970 CTCCTGTCTCCC
1 CTCCTATCT-CC
72982 CTCCTATCATCC
1 CTCCTATC-TCC
*
72994 CTCCTCTCTC
1 CTCCTATCTC
73004 TTCTTTCTCT
Statistics
Matches: 53, Mismatches: 6, Indels: 11
0.76 0.09 0.16
Matches are distributed among these distances:
9 15 0.28
11 3 0.06
12 32 0.60
13 3 0.06
ACGTcount: A:0.09, C:0.50, G:0.03, T:0.38
Consensus pattern (11 bp):
CTCCTATCTCC
Found at i:72979 original size:18 final size:18
Alignment explanation
Indices: 72910--72979 Score: 50
Period size: 18 Copynumber: 3.6 Consensus size: 18
72900 CCTGTCATCC
* *
72910 CTCCTCTCTCTATTATCT
1 CTCCTGTCTCTACTATCT
*
72928 CTCCTGTCTCTCCTCCTATCAT
1 CTCCTG--TCT-CTACTATC-T
*
72950 CCCTCCTATCTCTACTATCT
1 --CTCCTGTCTCTACTATCT
72970 CTCCTGTCTC
1 CTCCTGTCTC
72980 CCCTCCTATC
Statistics
Matches: 40, Mismatches: 6, Indels: 12
0.69 0.10 0.21
Matches are distributed among these distances:
18 14 0.35
20 4 0.10
21 13 0.32
22 4 0.10
24 5 0.12
ACGTcount: A:0.10, C:0.44, G:0.03, T:0.43
Consensus pattern (18 bp):
CTCCTGTCTCTACTATCT
Found at i:73780 original size:20 final size:21
Alignment explanation
Indices: 73755--73797 Score: 61
Period size: 21 Copynumber: 2.1 Consensus size: 21
73745 ACTGGTTTTT
73755 TTTCC-TCTCTTTTTGTATTC
1 TTTCCTTCTCTTTTTGTATTC
* *
73775 TTTCCTTTTTTTTTTGTATTC
1 TTTCCTTCTCTTTTTGTATTC
73796 TT
1 TT
73798 GAAAAAAAAA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
20 5 0.25
21 15 0.75
ACGTcount: A:0.05, C:0.19, G:0.05, T:0.72
Consensus pattern (21 bp):
TTTCCTTCTCTTTTTGTATTC
Found at i:75295 original size:718 final size:718
Alignment explanation
Indices: 73920--75339 Score: 2777
Period size: 718 Copynumber: 2.0 Consensus size: 718
73910 AACCAAAGCC
73920 CTGATACCAATTGATGACAACCATGAACCAAGGTTGCCTAAATAATGATCTTGAGATGGATTTCT
1 CTGATACCAATTGATGACAACCATGAACCAAGGTTGCCTAAATAATGATCTTGAGATGGATTTCT
* * *
73985 AACAATAAATAGAATTATTGATGCAAGAATAGAAGTTGAAAGAAGTAGAAAAAAATAACAAAATA
66 AACAATAAACAGAATTATTGATGCAAGAACAGAAATTGAAAGAAGTAGAAAAAAATAACAAAATA
74050 GAATAGATTAGAGATGGAGGATGGCGCCACAATCACAAGATTGATAAGCCAAAAGGAATGATCGC
131 GAATAGATTAGAGATGGAGGATGGCGCCACAATCACAAGATTGATAAGCCAAAAGGAATGATCGC
74115 CACAAGAGTCTTGGCCTCTTGATAAGATCCAGAAAAATTGGCTCACTCAAGAACCTAAGAATCAC
196 CACAAGAGTCTTGGCCTCTTGATAAGATCCAGAAAAATTGGCTCACTCAAGAACCTAAGAATCAC
74180 ACTCTCACACAAAATGTGTTTTCTGCAAATATGAATGTCTGCCCCCTCCAAATCTGTTTACAAGA
261 ACTCTCACACAAAATGTGTTTTCTGCAAATATGAATGTCTGCCCCCTCCAAATCTGTTTACAAGA
74245 GCTTATATATGCCCTCATAAGCCATAGTTAACACAAACCCTAAGGGGCTTATTATGCTAACAAGC
326 GCTTATATATGCCCTCATAAGCCATAGTTAACACAAACCCTAAGGGGCTTATTATGCTAACAAGC
74310 CCAACTCTTACTTAAACCCAAATAACAAGTTTCTATGCTAAATAAAGCCCAAAGCAAGTCACAAC
391 CCAACTCTTACTTAAACCCAAATAACAAGTTTCTATGCTAAATAAAGCCCAAAGCAAGTCACAAC
74375 CAGCAGGCCCTTTATTACAAAATAACCCAAGTCCTAATTGAATCCATTGGAGCCCATATCTTCCA
456 CAGCAGGCCCTTTATTACAAAATAACCCAAGTCCTAATTGAATCCATTGGAGCCCATATCTTCCA
74440 AATATATGCAATTAACTAGCTTGGGCTCTTCTAACTCCAGATTGGGTCTACTTTCAAATAGGCCA
521 AATATATGCAATTAACTAGCTTGGGCTCTTCTAACTCCAGATTGGGTCTACTTTCAAATAGGCCA
74505 GCAACCATCTTCTCTAGGTCTTCATTTATCCTCTTTGCCTTTGCCCTCGTTATTGGTCCTTGAAA
586 GCAACCATCTTCTCTAGGTCTTCATTTATCCTCTTTGCCTTTGCCCTCGTTATTGGTCCTTGAAA
74570 TCCTTCCAACGCCTTCAGGTCTTTGTCTTCAATGGACCTTCCTTGGTTTTCAATGGACCTTCCTT
651 TCCTTCCAACGCCTTCAGGTCTTTGTCTTCAATGGACCTTCCTTGGTTTTCAATGGACCTTCCTT
74635 GCT
716 GCT
74638 CTGATACCAATTGATGACAACCATGAACCAAGGTTGCCTAAATAATGATCTTGAGATGGATTTCT
1 CTGATACCAATTGATGACAACCATGAACCAAGGTTGCCTAAATAATGATCTTGAGATGGATTTCT
* *
74703 AACAATAAACAGAATTATTGATGCGAGAACAGAAATTGAAAGAAGTAGAAAAAAATAACAAAATG
66 AACAATAAACAGAATTATTGATGCAAGAACAGAAATTGAAAGAAGTAGAAAAAAATAACAAAATA
74768 GAATAGATTAGAGATGGAGGATGGCGCCACAATCACAAGATTGATAAGCCAAAAGGAATGATCGC
131 GAATAGATTAGAGATGGAGGATGGCGCCACAATCACAAGATTGATAAGCCAAAAGGAATGATCGC
74833 CACAAGAGTCTTGGCCTCTTGATAAGATCCAGAAAAATTGGCTCACTCAAGAACCTAAGAATCAC
196 CACAAGAGTCTTGGCCTCTTGATAAGATCCAGAAAAATTGGCTCACTCAAGAACCTAAGAATCAC
74898 ACTCTCACACAAAATGTGTTTTCTGCAAATATGAATGTCTGCCCCCTCCAAATCTGTTTACAAGA
261 ACTCTCACACAAAATGTGTTTTCTGCAAATATGAATGTCTGCCCCCTCCAAATCTGTTTACAAGA
*
74963 GCTTATATATGCTCTCATAAGCCATAGTTAACACAAACCCTAAGGGGCTTATTATGCTAACAAGC
326 GCTTATATATGCCCTCATAAGCCATAGTTAACACAAACCCTAAGGGGCTTATTATGCTAACAAGC
75028 CCAACTCTTACTTAAACCCAAATAACAAGTTTCTATGCTAAATAAAGCCCAAAGCAAGTCACAAC
391 CCAACTCTTACTTAAACCCAAATAACAAGTTTCTATGCTAAATAAAGCCCAAAGCAAGTCACAAC
75093 CAGCAGGCCCTTTATTACAAAATAACCCAAGTCCTAATTGAATCCATTGGAGCCCATATCTTCCA
456 CAGCAGGCCCTTTATTACAAAATAACCCAAGTCCTAATTGAATCCATTGGAGCCCATATCTTCCA
75158 AATATATGCAATTAACTAGCTTGGGCTCTTCTAACTCCAGATTGGGTCTACTTTCAAATAGGCCA
521 AATATATGCAATTAACTAGCTTGGGCTCTTCTAACTCCAGATTGGGTCTACTTTCAAATAGGCCA
*
75223 GCAACCATCTTCTCTAGGTCTTCCTTTATCCTCTTTGCCTTTGCCCTCGTTATTGGTCCTTGAAA
586 GCAACCATCTTCTCTAGGTCTTCATTTATCCTCTTTGCCTTTGCCCTCGTTATTGGTCCTTGAAA
75288 TCCTTCCAACGCCTTCAGGTCTTTGTCTTCAATGGACCTTCCTTGGTTTTCA
651 TCCTTCCAACGCCTTCAGGTCTTTGTCTTCAATGGACCTTCCTTGGTTTTCA
75340 TCATTATGCC
Statistics
Matches: 695, Mismatches: 7, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
718 695 1.00
ACGTcount: A:0.34, C:0.23, G:0.16, T:0.28
Consensus pattern (718 bp):
CTGATACCAATTGATGACAACCATGAACCAAGGTTGCCTAAATAATGATCTTGAGATGGATTTCT
AACAATAAACAGAATTATTGATGCAAGAACAGAAATTGAAAGAAGTAGAAAAAAATAACAAAATA
GAATAGATTAGAGATGGAGGATGGCGCCACAATCACAAGATTGATAAGCCAAAAGGAATGATCGC
CACAAGAGTCTTGGCCTCTTGATAAGATCCAGAAAAATTGGCTCACTCAAGAACCTAAGAATCAC
ACTCTCACACAAAATGTGTTTTCTGCAAATATGAATGTCTGCCCCCTCCAAATCTGTTTACAAGA
GCTTATATATGCCCTCATAAGCCATAGTTAACACAAACCCTAAGGGGCTTATTATGCTAACAAGC
CCAACTCTTACTTAAACCCAAATAACAAGTTTCTATGCTAAATAAAGCCCAAAGCAAGTCACAAC
CAGCAGGCCCTTTATTACAAAATAACCCAAGTCCTAATTGAATCCATTGGAGCCCATATCTTCCA
AATATATGCAATTAACTAGCTTGGGCTCTTCTAACTCCAGATTGGGTCTACTTTCAAATAGGCCA
GCAACCATCTTCTCTAGGTCTTCATTTATCCTCTTTGCCTTTGCCCTCGTTATTGGTCCTTGAAA
TCCTTCCAACGCCTTCAGGTCTTTGTCTTCAATGGACCTTCCTTGGTTTTCAATGGACCTTCCTT
GCT
Found at i:77800 original size:32 final size:33
Alignment explanation
Indices: 77740--77803 Score: 94
Period size: 33 Copynumber: 2.0 Consensus size: 33
77730 TACAAGCCAA
* **
77740 TGTATCGATACATTTTTTGGTGTATCGATACAT
1 TGTATCAATACATACTTTGGTGTATCGATACAT
77773 TGTATCAATACATACTTT-GTGTATCGATACA
1 TGTATCAATACATACTTTGGTGTATCGATACA
77804 AGTTTGGCTA
Statistics
Matches: 28, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
32 13 0.46
33 15 0.54
ACGTcount: A:0.28, C:0.14, G:0.16, T:0.42
Consensus pattern (33 bp):
TGTATCAATACATACTTTGGTGTATCGATACAT
Found at i:78452 original size:20 final size:22
Alignment explanation
Indices: 78427--78467 Score: 68
Period size: 20 Copynumber: 2.0 Consensus size: 22
78417 TTCTTTTCTT
78427 TCCCCCTTAA-AA-ATAATTTC
1 TCCCCCTTAATAAGATAATTTC
78447 TCCCCCTTAATAAGATAATTT
1 TCCCCCTTAATAAGATAATTT
78468 TAACAAATTT
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
20 10 0.53
21 2 0.11
22 7 0.37
ACGTcount: A:0.34, C:0.27, G:0.02, T:0.37
Consensus pattern (22 bp):
TCCCCCTTAATAAGATAATTTC
Found at i:80215 original size:21 final size:20
Alignment explanation
Indices: 80169--80215 Score: 51
Period size: 21 Copynumber: 2.3 Consensus size: 20
80159 TTTGAAACTG
*
80169 ATTTTGATGAAAAACGATGT
1 ATTTTGATGAAAAACGAAGT
*
80189 AATTTGAAGTGAAAAAC-AAGT
1 ATTTTG-A-TGAAAAACGAAGT
80210 ATTTTG
1 ATTTTG
80216 CAAAAGATTT
Statistics
Matches: 22, Mismatches: 3, Indels: 3
0.79 0.11 0.11
Matches are distributed among these distances:
20 5 0.23
21 9 0.41
22 8 0.36
ACGTcount: A:0.43, C:0.04, G:0.19, T:0.34
Consensus pattern (20 bp):
ATTTTGATGAAAAACGAAGT
Found at i:80355 original size:13 final size:13
Alignment explanation
Indices: 80337--80375 Score: 69
Period size: 13 Copynumber: 3.0 Consensus size: 13
80327 ATAAACCCCC
*
80337 TGTATCGATACAG
1 TGTATCGATACAA
80350 TGTATCGATACAA
1 TGTATCGATACAA
80363 TGTATCGATACAA
1 TGTATCGATACAA
80376 AGAAAGATGT
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
13 25 1.00
ACGTcount: A:0.36, C:0.15, G:0.18, T:0.31
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:80387 original size:20 final size:20
Alignment explanation
Indices: 80362--80440 Score: 68
Period size: 20 Copynumber: 3.6 Consensus size: 20
80352 TATCGATACA
80362 ATGTATCGATACAAAGAAAG
1 ATGTATCGATACAAAGAAAG
**
80382 ATGTATCGATACATTGAATTTTTCAG
1 ATGTATCGATACAAAGAA------AG
* *
80408 ATGTATCGATACACAGAAAC
1 ATGTATCGATACAAAGAAAG
80428 ATGTATCGATACA
1 ATGTATCGATACA
80441 TTTTGGAAAT
Statistics
Matches: 48, Mismatches: 5, Indels: 12
0.74 0.08 0.18
Matches are distributed among these distances:
20 30 0.62
26 18 0.38
ACGTcount: A:0.41, C:0.14, G:0.16, T:0.29
Consensus pattern (20 bp):
ATGTATCGATACAAAGAAAG
Found at i:88448 original size:476 final size:476
Alignment explanation
Indices: 87556--96437 Score: 9687
Period size: 476 Copynumber: 18.8 Consensus size: 476
87546 CATTAATACA
* *
87556 CATACTAATCCTCATTCTTTTTGGGATTAGGCACCATAAACATAGTCTTCTCATAAGGATACACG
1 CATACTAATCCCCATTCTTTTTAGGATTAGGCACCATAAACATAGTCTTCTCATAAGGATACACG
* *
87621 ATATTGATGCTTTGGTTTCGCAAGAAAGGGTTTCTTCCCACTAATTTTTGTAAAGTCTAAG-TCT
66 ATATTGATGCTTTGGTTTCGCAAGAAAGGCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTTC-
* * *
87685 GTGCATCAAATTAGACAAACATGGATTCTAGTAATGATCTCCATTCATTTTGTGATTAGGCACTA
130 GTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTA
* * * *
87750 TAAACAGATTCTCCTCATTAGGATAAATGATATTGATGATTTGTTTTTGTATGGAAATCTTTCTT
195 TAAACACATTCTCCTCATTAGGATAAATGATATTGATGATTTTTTTTTGCATGGAAATCTTTCCT
* * * * * *
87815 TTTCCTTATTTTCCTTAAAATCAAAGTTCATCACATAACTAAGATAAGCATAGATTCTCGTAACA
260 TTGCCTTATTTTCCTTAAAATCAAAGTTTATCTCATAAATAAGACAAGCATCGATTCTCGTAACA
* * * * * *
87880 GTCTCCATTATTTTCAGGATTAGGAACCTAAAACACAATCCTTTCATTAGGTTACATGACTTTGA
325 GTCTCCATTATTTTCAAGATTGGGAACCTAAAACACATTCCCTTCATTAGGATACATGACATTGA
* * * *
87945 TGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCTTTTTTAATAGAATCAAAGTCTGCCTCTT
390 TGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGTCTCTT
** *
88010 AAATAAGACAAACACAAATAAT
455 AAATAAGACAAACATGAATAGT
** * * * * * *
88032 CATACTAATCCCCACCCTTTTTAGGATCAAGCGCCATAAACATAGTCTTCTCATTAGAATTCACG
1 CATACTAATCCCCATTCTTTTTAGGATTAGGCACCATAAACATAGTCTTCTCATAAGGATACACG
* * * * *
88097 ATATTGATGTTTTGGTTTCGTAAGAAAGACTTTCCTCCCACCAATTTTTGTAAAGTCTAAGTTCA
66 ATATTGATGCTTTGGTTTCGCAAGAAAGGCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTTCG
* * *
88162 TGCGTCAAATGAGACAAATATGGATTCTAGTAATGTTCTTCATTCATTTTGTGATTAGGCACTAT
131 TGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTAT
88227 AAACACATTCTCCTCATTAGGATAAATGATATTGATGATTTTTTTTTGCATGGAAATCTTTCCTT
196 AAACACATTCTCCTCATTAGGATAAATGATATTGATGATTTTTTTTTGCATGGAAATCTTTCCTT
* * * *
88292 TGCCTTATTTTCCTTAAAATCAAAGTTTATCTCAAAAATAAGACAAGCTTCAATTCTTGTAACAG
261 TGCCTTATTTTCCTTAAAATCAAAGTTTATCTCATAAATAAGACAAGCATCGATTCTCGTAACAG
* *
88357 TCTCCATTATTTTTAAGATTGGGAACCTAAAACACATTCCCTTCATTAGGATACATGACATAGAT
326 TCTCCATTATTTTCAAGATTGGGAACCTAAAACACATTCCCTTCATTAGGATACATGACATTGAT
* * * * * * * *
88422 ACTTTGGTGTCACAAGAAAAGCTTTTCTTTCTACCGTTTTTGATAAAATCAAAATTTATCTCATG
391 GCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTA
* * *
88487 AATAGGACAAACTTGAATACT
456 AATAAGACAAACATGAATAGT
* * *
88508 CATACTAATCCCTATTCTTTTCT-GGATTAGGCACCATAAACATAGTCTTCTCATAAGAATACAT
1 CATACTAATCCCCATTCTTTT-TAGGATTAGGCACCATAAACATAGTCTTCTCATAAGGATACAC
* * * * * * *
88572 GATATAGATGCTTTGGTTTCGCAAGAAAGGCTTTTTTCCCTCTAACTTTTGTAAAGTTTAAGTTT
65 GATATTGATGCTTTGGTTTCGCAAGAAAGGCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTTC
* * * * *
88637 GTGCCTCAAATGAGACAAACATGGACTCTAGTAATGATTTTCTTTAATTTTGTGATTTGGCAC-A
130 GTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTA
* *
88701 TAAATACATTCTCCTCATTAGGATAAATAATATTGATGATTTTTTTTTGCATGGAAATCTTTCCT
195 TAAACACATTCTCCTCATTAGGATAAATGATATTGATGATTTTTTTTTGCATGGAAATCTTTCCT
* * * * * *
88766 TTTCCTTATTTTCCTTAAAATCAATGTTTATAC-CATAAAGAAGACAAGCACCAATTCTCATAAC
260 TTGCCTTATTTTCCTTAAAATCAAAGTTTAT-CTCATAAATAAGACAAGCATCGATTCTCGTAAC
* * * * *
88830 TGTCTCCATTGTTTTCAAGATCGAGAACCTAAAACATATTCCCTGT-ATTAGGATACATGACATT
324 AGTCTCCATTATTTTCAAGATTGGGAACCTAAAACACATTCCCT-TCATTAGGATACATGACATT
* * * ** ** *
88894 GATGCTTCGGTATCGTAAGAATGGCTTTTCTTTTTACCGTTTTTGATGGAATCAAAGTTTGTCTC
388 GATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGTCTC
*
88959 TTAAATAAGATAAACATGAATAGT
453 TTAAATAAGACAAACATGAATAGT
* * * * * * *
88983 CATACTAATCCCAATTGTTTTCTA-GAGTAGGCACTATAAACATAGTTTTCTCAAAAGGATGCAC
1 CATACTAATCCCCATTCTTTT-TAGGATTAGGCACCATAAACATAGTCTTCTCATAAGGATACAC
** * * *
89047 GATATTGATGCTTTGGTTTTTCAAGAAAGGCTTTCTTCCAACAAATTTTGGTAAAGTCTAAGTTC
65 GATATTGATGCTTTGGTTTCGCAAGAAAGGCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTTC
* * * * *
89112 GTGCCTTAAATGAGGCAAAAATGGATTCTAGTAAAGATCTTCATTCATTTTGTCATTAGGCACTA
130 GTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTA
* * ** * * *
89177 TAAACACATTCTCCTCTTTAGGATAAATGGTATTGAAAATTTTCTTTTGCATGAAAATCTTT-TT
195 TAAACACATTCTCCTCATTAGGATAAATGATATTGATGATTTTTTTTTGCATGGAAATCTTTCCT
* * * * * *
89241 TATGCCCTATTTTCTTTAAAAGCAAAGTTTAACTCTTAAATTAGACAAGCATCGATTCTCGTAAT
260 T-TGCCTTATTTTCCTTAAAATCAAAGTTTATCTCATAAATAAGACAAGCATCGATTCTCGTAA-
* ** * * * *
89306 C-GTCTCCATTCTTTTCAAGATTATG-ATCTAAAAATACATTTCCTTCATTAGGATACTTGACAT
323 CAGTCTCCATTATTTTCAAGATTGGGAACCT-AAAACACATTCCCTTCATTAGGATACATGACAT
* * *
89369 TGATGC-TTGCTGTCACAAG-AAAGTTTTTCTTTCCA-CGATTTTTGATAGAATCAAAGTTGTTT
387 TGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCG-TTTTTGATAGAATCAAA---GTTT
**
89431 GTCTCTTTAAA-AAGACAAACATGAATACA
448 GTCTC-TTAAATAAGACAAACATGAATAGT
* * *
89460 CATACTAATCCTCATTCTTTTTTGGATTAGGCACCATAAACATAGCCTTCTCATAAGGATACACG
1 CATACTAATCCCCATTCTTTTTAGGATTAGGCACCATAAACATAGTCTTCTCATAAGGATACACG
* * * * *
89525 ATATTAATGCTTTGGTTTCACAAGAAAGGGTTTCTTCCCACTAATTTATGTAAAGTCTAAGTTCG
66 ATATTGATGCTTTGGTTTCGCAAGAAAGGCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTTCG
* * *
89590 TGCATCAAATTAGACAAACATGGATTCTAGTAATGATCTCCATTCATTTTGTGATTAGGCACTAT
131 TGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTAT
* * * *
89655 AAACAGATTCTCCTCATTAGGATAAATGATATT-ATAATTTTTTTTTGTATGGAAATCTTTCTTT
196 AAACACATTCTCCTCATTAGGATAAATGATATTGATGATTTTTTTTTGCATGGAAATCTTTCCTT
* * * * *
89719 TTCCTTATTTTCCTTAAAATCAAAGTTCATCACATAACTAAGACAAGCATAGATTCTCGTAACAG
261 TGCCTTATTTTCCTTAAAATCAAAGTTTATCTCATAAATAAGACAAGCATCGATTCTCGTAACAG
* * * *
89784 TCTCCATTATTTTCAAGATTAGGAACCTAAAACACAATCCTTTCATTAGGTTACATGACATTGAT
326 TCTCCATTATTTTCAAGATTGGGAACCTAAAACACATTCCCTTCATTAGGATACATGACATTGAT
* * *
89849 GCTTTGGTGTC-CTAAGAAAAGCTTTTCTTTCCA------TTGATAGAATCAAAGTCTGCCTCTA
391 GCTTTGGTGTCGC-AAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGTCTCTT
* ** *
89907 AAATAAGGCAAACACAAATAAT
455 AAATAAGACAAACATGAATAGT
* * * ***
89929 CATACTAATCCCCATTCTTTATAGGATTAGGCACCATAAACATAGTCTTCTTATTAGGATGTGCG
1 CATACTAATCCCCATTCTTTTTAGGATTAGGCACCATAAACATAGTCTTCTCATAAGGATACACG
* * *
89994 ATATTGATGTTTTGGTTTCGCAAGAAAGGCTTTCTTTCCACCAATTTTTGTAAAGTCTAAGTTCA
66 ATATTGATGCTTTGGTTTCGCAAGAAAGGCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTTCG
* * * * * *
90059 TGACTCAAATGAGATAAATATGGATTGTAGTATTGATCTTCATTCATTTTGTGATTAGGCACAAT
131 TGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTAT
*
90124 AAACACATTCTCCTCATTAGGATAAATGATACTGATGATTTTTTTTTTTTGCATGGAAATCTTTC
196 AAACACATTCTCCTCATTAGGATAAATGATATTGATGA---TTTTTTTTTGCATGGAAATCTTTC
* * * * *
90189 ATTTACCTTATTTTCCTAAAAATCAAAGTTTATCTCAAAAATAAGACAAGCTTCGATTCTCGTAA
258 CTTTGCCTTATTTTCCTTAAAATCAAAGTTTATCTCATAAATAAGACAAGCATCGATTCTCGTAA
* * *
90254 CAGTCTCCATTATTTTCAAGATTGAGAACCTAAAACACATTCCCTTCATTAGGGTACGTGACATT
323 CAGTCTCCATTATTTTCAAGATTGGGAACCTAAAACACATTCCCTTCATTAGGATACATGACATT
* * * * * * *
90319 GATACTTTGGTATCACAAGAAAAGCTTTTCTTTCTACCGTTTTTGATAAAATCAAAATTTATCTC
388 GATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGTCTC
* * * * *
90384 ATGAATAGGACAAACTTGAATACT
453 TTAAATAAGACAAACATGAATAGT
* * * * *
90408 CATACTAATCTCTATTCTTTTTTGGATTAGGCACAATAAACATAGTCTTCTCATAAGAATACACG
1 CATACTAATCCCCATTCTTTTTAGGATTAGGCACCATAAACATAGTCTTCTCATAAGGATACACG
* * * *
90473 ATATTGATGCTTTGGTTTCACAAGAAAGGCTTTCTTTCCCTCCAA--CTT-T---GT-TAAGTTT
66 ATATTGATGCTTTGGTTTCGCAAGAAAGGCTTTC-TTCCCACCAATTTTTGTAAAGTCTAAGTTC
* * * * *
90531 GTGCCTCAAATGAGACAAACATGGACTCTAGTAATGATTTTCTTTAATTTTGTGATTTGGCACTA
130 GTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTA
* * *
90596 TAAACGCATTCTCCTCATTAGGATAAATGATATTAATGATTTTTTTTTTGCATGGAAATCTTTCT
195 TAAACACATTCTCCTCATTAGGATAAATGATATTGATGA-TTTTTTTTTGCATGGAAATCTTTCC
* * * * * * * **
90661 TTTTCCTTATTTTCCTTAAAATCAATGTTTATCCCTTAAAGAAGACAAGCACCAATTCTTATAAC
259 TTTGCCTTATTTTCCTTAAAATCAAAGTTTATCTCATAAATAAGACAAGCATCGATTCTCGTAAC
* * *
90726 AGTCTCCATTATTTTCAAGATCGAGAACCTAAAACACATTCCCTACATTAGGATACATGACATTG
324 AGTCTCCATTATTTTCAAGATTGGGAACCTAAAACACATTCCCTTCATTAGGATACATGACATTG
* ** ** * * * *
90791 ATGCTTTGGTATCATAAGAATGGCTTTTCTTTCTACCGTTTTTTATGGAATCAAAGTTTGTGTCT
389 ATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGTCTCT
* *
90856 TAAATAAGATAAACATGAATTGT
454 TAAATAAGACAAACATGAATAGT
* ** * * * *
90879 CACACTAATCCTAATTCTTTTTCA-GAGTAGGCACTATAAACATAGTCTTCTCAAAAGGATGCAC
1 CATACTAATCCCCATTCTTTTT-AGGATTAGGCACCATAAACATAGTCTTCTCATAAGGATACAC
* * * * *
90943 AAAATTGATGCTTTTGTTTCGCAAGAAA--CATTTCTTCCCACAAATTTTGGTAAAGTCTAAGTT
65 GATATTGATGCTTTGGTTTCGCAAGAAAGGC-TTTCTTCCCACCAATTTTTGTAAAGTCTAAGTT
* * * * * *
91006 CATGCCTTAAATGAGGCAAAAATGGATTCTAGTAAAGATCTTCATTCATTTTGTCATTAGGCACT
129 CGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACT
* ** * * *
91071 ATAAACACATTCTCCTCATTAGGATAAATGGTATTGAAAATTTTCTTTTGCTTGGAAATCTTTTC
194 ATAAACACATTCTCCTCATTAGGATAAATGATATTGATGATTTTTTTTTGCATGGAAATCTTTCC
* * * * *
91136 TTTGCCCTATTTTCCTTTAAAATCAAAGTTTAACTCTTAAATTAGACAAGCATCGATTCTCATAA
259 TTTGCCTTATTTTCC-TTAAAATCAAAGTTTATCTCATAAATAAGACAAGCATCGATTCTCGTAA
* * * * * * * * *
91201 TAGTCTCCATTCTTTTCAATATTGTGACCCAAAAATACATTCTCTTCATTAGGATACAAGACATT
323 CAGTCTCCATTATTTTCAAGATTGGGAACCTAAAACACATTCCCTTCATTAGGATACATGACATT
* * * * * *
91266 GATGCTTTAGTGTCACAAG-AAAGTTTTTCTTTCCACCATTTTTGACAGAATCAAAGTTTGTTTC
388 GATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGTCTC
**
91330 TTAAATAAGACAAACATGAATACA
453 TTAAATAAGACAAACATGAATAGT
* * * *
91354 CATACTAATCCTCATTC-TTTTCGAGATTAGGCACCATAAACATAGTCTTTTCATAGGGATACAC
1 CATACTAATCCCCATTCTTTTTAG-GATTAGGCACCATAAACATAGTCTTCTCATAAGGATACAC
* * * *
91418 GATATTGATGGTTTAGTTTCGCAAGAAAGGGC-TTCTTCCGACCAATTTATGTAAAGTCTAAGTT
65 GATATTGATGCTTTGGTTTCGCAAGAAA-GGCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTT
* * *
91482 CATGCATCAAATGAGATAAACATGGATTCTAGTAATGATC-TCTATTCATTTTGTGATTAGGCAC
129 CGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTC-ATTCATTTTGTGATTAGGCAC
* * *
91546 TATAAACATATTCTCCTCATTCA-GAGAAATGGTATTGATGATTTTTTTTTTTGCATGGAAATCT
193 TATAAACACATTCTCCTCATT-AGGATAAATGATATTGATGA--TTTTTTTTTGCATGGAAATCT
* * * * * *
91610 TTCCTTTTCCTTATATTCCTTAAAATCCAAGTTCATCAT-ATAACTAAGACAAGCATAGATTCTC
255 TTCCTTTGCCTTATTTTCCTTAAAATCAAAGTTTATC-TCATAAATAAGACAAGCATCGATTCTC
* * * *
91674 GTAATAGTCTCCATTATTTTCAGGATTGAGAACCTAAAACACAATT-CCTTCATTAGGTTA-ATG
319 GTAACAGTCTCCATTATTTTCAAGATTGGGAACCTAAAACAC-ATTCCCTTCATTAGGATACATG
* * * * *
91737 ACATTGATGCTTTGTTGT-TCAATAAAAGCTTTTCTTTCCGCCGTTTTTGATAGAATCAAAGTCT
383 ACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTT
* * *
91801 GCCTCTTAAATAGGACAAACAAGAATAGT
448 GTCTCTTAAATAAGACAAACATGAATAGT
* * * * *
91830 TATACTAATCCCTATTCTTTTCTA-GATTAGGCGCCATAAACATAGTCTTCTCATTAGGAGACAC
1 CATACTAATCCCCATTCTTTT-TAGGATTAGGCACCATAAACATAGTCTTCTCATAAGGATACAC
* * * *
91894 G--A-T-A--C-TAGG----GC---TATGG---T-TT--CA-CAA------CAAAGTCTAAGTTC
65 GATATTGATGCTTTGGTTTCGCAAGAAAGGCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTTC
* * * * *
91932 GTGCATCATATGAGTCAAACATGGATTCTAGTAATGATCTTCCTTCGTTTTGTGATTAGGCACTA
130 GTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTA
* * * * * * * *
91997 TAAACA-AAT-T-CTCAGTAGGATAAATGATTTTGATTATGTTCTTTTGCATGAAAATCTTTTCT
195 TAAACACATTCTCCTCATTAGGATAAATGATATTGATGATTTTTTTTTGCATGGAAATCTTTCCT
* * * * * * * *
92059 TTGCC-AATTTTCATTAAAATCAAAGTTCACCCCCTAAATAAGACAAGCATCGATTCTCATAATA
260 TTGCCTTATTTTCCTTAAAATCAAAGTTTATCTCATAAATAAGACAAGCATCGATTCTCGTAACA
** * * * *
92123 GTCTCCATTCCTTTCAAGATTGGGAACCAAAAAGACATTCCCTTCATTATGATACATGACATTAA
325 GTCTCCATTATTTTCAAGATTGGGAACCTAAAACACATTCCCTTCATTAGGATACATGACATTGA
* * * *
92188 TGCTTTGGTGTCCCAA-ACAAAGCTTTTCTTTCAACCATTTTTGATAGAATCAAAGTTTGCCTCT
390 TGCTTTGGTGTCGCAAGA-AAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGTCTCT
* *
92252 TAAATAAGACAAACATAAATTGT
454 TAAATAAGACAAACATGAATAGT
**
92275 CATACTAAT-CCCATTCTTTTCT-GGATTAGGCACCATAAACATAGTCTTCTCATAAGGATGTAC
1 CATACTAATCCCCATTCTTTT-TAGGATTAGGCACCATAAACATAGTCTTCTCATAAGGATACAC
* * * *
92338 GATATTGATGCTTTGGTTTCGCAAAGAAACGATTTTTTCCCTCCAATTTTTGTAAAGTCTAAGTT
65 GATATTGATGCTTTGGTTTCGC-AAGAAAGGCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTT
* * * *
92403 CGTGCCTCAAATAAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTTTGATTAGGAATT
129 CGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACT
* * * * * * *
92468 ATAAATAAATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTCGCGTGAAAATCTTTTC
194 ATAAACACATTCTCCTCATTAGGATAAATGATATTGATGATTTTTTTTTGCATGGAAATCTTTCC
* ** * * * * *
92533 TTTCCCCAATTTTCCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTTGAAA
259 TTTGCCTTATTTT-CCTTAAAATCAAAGTTTATCTCATAAATAAGACAAGCATCGATTCTCGTAA
* * * * * * * *
92598 TAGTCTACATTCTTTTCATGATTGGGATCCAAAAACACATTCCCTTCATTAGGTTACTTGACATT
323 CAGTCTCCATTATTTTCAAGATTGGGAACCTAAAACACATTCCCTTCATTAGGATACATGACATT
* * * * * *
92663 GATACTTTGGTGTCGCAAGAAAAGCTTTTTTTTCTACCATTTTTTATAGAATCAGAA-TTTATCT
388 GATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCA-AAGTTTGTCT
* *
92727 CTTAAATAAGACAAACTTGAATACT
452 CTTAAATAAGACAAACATGAATAGT
* * * * *
92752 CATACTAATCCCTATTCTTTTCT-GGATTAGGCACCATAAACATAATCTTGTCGTAAAGATACAC
1 CATACTAATCCCCATTCTTTT-TAGGATTAGGCACCATAAACATAGTCTTCTCATAAGGATACAC
* * * * * *
92816 GATATTGATGCTTTGGCTTCGCAAGAAAGGCTTTTTTCCCATCGACTTTTGTAAAGTCTAAGTTT
65 GATATTGATGCTTTGGTTTCGCAAGAAAGGCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTTC
* * * * *
92881 GTGCCTCAAATAAGACAAACATGGATTCTAGTAATGATTTTCGTTAATTTTTTGAGTTAGTG--C
130 GTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGA-TTAG-GCAC
* * * * * * * * *
92944 TATAATCATATTCTCGTCGTTAGGGTAAATGATATTGATCATTTTCTTTTGCGTGAAAATCTTT-
193 TATAAACACATTCTCCTCATTAGGATAAATGATATTGATGATTTTTTTTTGCATGGAAATCTTTC
* * * * * * * * * *
93008 TTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAGTAAGACAAGCAACGATGCTTGCAA
258 CTTTGCCTTATTTTCCTTAAAATCAAAGTTTATCTCATAAATAAGACAAGCATCGATTCTCGTAA
* * * *
93073 CAGTCTCTATTATTTTCAGGATTGGGAACCTAAAATACATTCCCTTCATTAGGATACAAGACATT
323 CAGTCTCCATTATTTTCAAGATTGGGAACCTAAAACACATTCCCTTCATTAGGATACATGACATT
* * * *
93138 GATGCTTTGGTGTCGTAAGAAAAGCTTTTCTTTCAACTGTTTTTGATGGAATCAAAGTTTGTCTC
388 GATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGTCTC
93203 TTAAATAAGACAAACATGAATAGT
453 TTAAATAAGACAAACATGAATAGT
** * * * * * * * * * *
93227 CATACTAATCCTAATT-TTTTTCAGTAGTAGGCGCTATAGACTTTGTCTTTTCAAAAGGATGCAC
1 CATACTAATCCCCATTCTTTTT-AGGATTAGGCACCATAAACATAGTCTTCTCATAAGGATACAC
* * * *
93291 GATATTGATGCTTTGGTTTCACAAGAAAGGCTTTCTTTCTTCC-CACAAATTTCGATAGAGTCTA
65 GATATTGATGCTTTGGTTTCGCAAGAAAGGCTTTC-TTC--CCAC-CAATTTTTG-TAAAGTCTA
* * * * * * * ** ** * * **
93355 AGTTCGTGCTTTAAAGGAGCCAAAAATGGATTCCAGTAAAGATAAATGGTATAACTCTT-AAATT
125 AGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGAT-CTTCAT-TCA-TTTTGTGATT
* * ** ** *
93419 AGGTACTATAAACACATCCTCCTCATTAGGATAAATGGCATTGAAAATTTTATTTTGCATGGAAA
187 AGGCACTATAAACACATTCTCCTCATTAGGATAAATGATATTGATGATTTTTTTTTGCATGGAAA
* * * * * *
93484 TC-TTCTCTTTACAC-TATTTTGCTTAAAATCAAAGTTTAACTCTTAAATTAGACAACCATCGAT
252 TCTTTC-CTTTGC-CTTATTTTCCTTAAAATCAAAGTTTATCTCATAAATAAGACAAGCATCGAT
* * * * * * * * * *
93547 TCTCCTAATTA-TCTCCATTCTTTTCAAGATTGTGACCCAAAAATA-AATCCCATCATTAGAATA
315 TCTCGTAA-CAGTCTCCATTATTTTCAAGATTGGGAACCTAAAACACATTCCCTTCATTAGGATA
* *
93610 CAAGACATTGATGCTTTGGTGTCGCAAG-AAAG-TTTCTCTTTCCAACGTTTTTGATAGAATCAA
379 CATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTT-TCTTTCCACCGTTTTTGATAGAATCAA
* *
93673 AGTTTTTCTCTTAAATAAGACAAACATGAATACT
443 AGTTTGTCTCTTAAATAAGACAAACATGAATAGT
** ** * * *
93707 CAATACTAATCCTTATTCTTTTGGGGATTAGGCAACATAAACATAGTCCTCTCATAAGGATACAA
1 C-ATACTAATCCCCATTCTTTTTAGGATTAGGCACCATAAACATAGTCTTCTCATAAGGATACAC
* * *** * *
93772 GATATTGATGCTTTGGTTTTAG-AAGAAAGGGTTTCTT-CCTTTAATTTTTGTAGAGTCAAAGTT
65 GATATTGATGCTTTGG-TTTCGCAAGAAAGGCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTT
* ** * * *
93835 TGTGGATCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTTATTTTTTGATTAGACACT
129 CGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACT
* **
93900 ATAAACACATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGGAAAT-TTTGT
194 ATAAACACATTCTCCTCATTAGGATAAATGATATTGATGATTTTTTTTTGCATGGAAATCTTTCC
* * * * * *
93964 TCTTCCCCTATTTTCCTTAAAATCAAAGTTTATCTCTTAAGTAAGACAAGTATCGATTCTCGCAA
259 T-TTGCCTTATTTTCCTTAAAATCAAAGTTTATCTCATAAATAAGACAAGCATCGATTCTCGTAA
* * * ** * * *
94029 -TGTCTCCATTCTTTTCATGATTTTGAACCAAAAACACATTCTCTTCGTTAGTG-TACATGACAT
323 CAGTCTCCATTATTTTCAAGATTGGGAACCTAAAACACATTCCCTTCATTAG-GATACATGACAT
* * * * * * * * *
94092 TGATGCTTTGGTGTTGTAGGAAAAGTTTTTATTTCCTCCAATTTTT-ATAGAATCAAAATTTGCC
387 TGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACC-GTTTTTGATAGAATCAAAGTTTGTC
* *
94156 TATTAAATAGGACAAACATGAATAGT
451 TCTTAAATAAGACAAACATGAATAGT
* * * *
94182 CATACTAATCTCCATTC-TTTTAGGGATTAGGCACCCTAAACATAGTATTCTCATAAGGATTCAC
1 CATACTAATCCCCATTCTTTTTA-GGATTAGGCACCATAAACATAGTCTTCTCATAAGGATACAC
* * * **
94246 GATATTGACGCTTTGGTTTTTGCAAGAAAGGGTTTCTGGCCACCAATTTTTGTAAAGTCTAAGTT
65 GATATTGATGCTTTGG-TTTCGCAAGAAAGGCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTT
** *
94311 TATGCCTCAAATGAGACAAATATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACT
129 CGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACT
* * ** *
94376 ATAAACACATTCTCCTCATTAGGATAAATGACATTAATGA--TTTTTTTG-AGTGGAAGCCTTTT
194 ATAAACACATTCTCCTCATTAGGATAAATGATATTGATGATTTTTTTTTGCA-TGGAAATCTTTC
* * * * *
94438 TTTTGCCTTATTTTTCTTAAAATCAAAGTTCATCCCATAAATAAGACAGGCATCGATTCTCGTAA
258 CTTTGCCTTATTTTCCTTAAAATCAAAGTTTATCTCATAAATAAGACAAGCATCGATTCTCGTAA
* * * * *
94503 CAGTCTCCATTATTTTCAAGATTTGGAAGCTAAAACACTTTCCCTTCAATAGGTTACATGACATT
323 CAGTCTCCATTATTTTCAAGATTGGGAACCTAAAACACATTCCCTTCATTAGGATACATGACATT
* * * * * *
94568 GTTACTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCATTTTTGATAGAATCAAAATTTATCGC
388 GATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGTCTC
* * *
94633 TTAAATAAGACAAACTTAAATACT
453 TTAAATAAGACAAACATGAATAGT
* * * * * *
94657 CATACTGATCCCTAATCTTTTCT-GGATTAGGCACCATAAGCATAGTCTTCTCATAATGATACAT
1 CATACTAATCCCCATTCTTTT-TAGGATTAGGCACCATAAACATAGTCTTCTCATAAGGATACAC
* * * * * *
94721 GATATTCATGCTTTGGTTTCGCAAGAAAGGCTTTTTTCCCACCGAGTTTTGTGAAGTCTATGTTC
65 GATATTGATGCTTTGGTTTCGCAAGAAAGGCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTTC
* * * ** * *
94786 GCGCCTCAAGTAAGACAAACATGGATTCTAGTAATGAAGTTCATTCATTTTGTGGTTAGGCAGTA
130 GTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTA
* * * *
94851 TAAATACATTCTCCTCACTAGGATAAATGATATTGATGA-TTTTTTTTGCATGGAAAACTTTTCT
195 TAAACACATTCTCCTCATTAGGATAAATGATATTGATGATTTTTTTTTGCATGGAAATCTTTCCT
* * * * * *
94915 TTCCCCTATTTTCCTTAAAATCAAAGTTTATCTCTTAAAAAAGACAAGCATTGATTCTCGTAACT
260 TTGCCTTATTTTCCTTAAAATCAAAGTTTATCTCATAAATAAGACAAGCATCGATTCTCGTAACA
* * * **
94980 GTCTCCATTCTTTTCATGATTGGGAACCAAAAACA-ATTCCCTTTGTTAGGATACATGACATTGA
325 GTCTCCATTATTTTCAAGATTGGGAACCTAAAACACATTCCCTTCATTAGGATACATGACATTGA
* * * * *
95044 TGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCTCCGTTGTTGATAGAATCAAAATTTGCCTATT
390 TGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGTCTCTT
*
95109 AAATAAGACAAACTAATATTAATAGT
455 AAATAAGACAAAC----ATGAATAGT
* ** *
95135 CATACTAATCCCCATTC-TTTTCGAGATTACACAACC-TAAACATAGTATTCTCATAAGGATACA
1 CATACTAATCCCCATTCTTTTTAG-GATTAGGC-ACCATAAACATAGTCTTCTCATAAGGATACA
* * * * *
95198 TGATATTGATGCTTTGCTTTTGCAAGAAAGG---------CACTAATTTTGGTAAAGTCTAAGTT
64 CGATATTGATGCTTTGGTTTCGCAAGAAAGGCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTT
* * *
95254 TGTGCCTCAAATGAGACAAATATGGATTCTAGTAATGATCTTCATTCATTTTATGATTAGGCACT
129 CGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACT
* * * * * * * *
95319 ATAAACATAATCTCCTCAATAGGATAAAT-ATTATTGCTAATTTTCTTTTGTATGGAAATCTTTT
194 ATAAACACATTCTCCTCATTAGGATAAATGA-TATTGATGATTTTTTTTTGCATGGAAATCTTTC
* * *
95383 CTATGTCC-TATTTTCCTTAAAATCAAAGTTTATCCCATAAATAAGACAAGCATCGATTCTCATA
258 CTTTG-CCTTATTTTCCTTAAAATCAAAGTTTATCTCATAAATAAGACAAGCATCGATTCTCGTA
* ** * * * * *
95447 ATAGTCTCCA-TCCTTTCAAGATTGGGAAGCAAAAAGACATTCCATTCATTAGGATACAAGACAT
322 ACAGTCTCCATTATTTTCAAGATTGGGAACCTAAAACACATTCCCTTCATTAGGATACATGACAT
* * *
95511 TGATGCTTTAGTGTCGCAAGAAAAACTTTTCTTTCC-CCTATTTTTGATAGAATCAAAGTTT-TG
387 TGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACC-GTTTTTGATAGAATCAAAGTTTGT-
* * *
95574 CTCTTAAATAACACAAAAATGAATAGCC
450 CTCTTAAATAAGACAAACATGAATAG-T
* * * ** * * *
95602 CA-ACAAAT-CCCATTCTTTTCAAGATTAGGTGCCATAAATATAGCCTACTCATAAGGATACACG
1 CATACTAATCCCCATTCTTTTTAGGATTAGGCACCATAAACATAGTCTTCTCATAAGGATACACG
* * * * *
95665 ATATTGATGCTTTTGTTTCGCAAAAAATGCTTTCTTCCCACCAATTTTTTTAAAGTCTAAGTTCA
66 ATATTGATGCTTTGGTTTCGCAAGAAAGGCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTTCG
* * *
95730 TGCCTCAAATTAGACAAACATGGATTCTAGTAATGATCTCCATTCATTTTGTGATTAGGCACTCT
131 TGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTAT
* * *
95795 AAACACATTCTCCTCACTAGGATAAATGGTATTGATGA-TTTTTTTTGCATGGAAATCTCTCCTT
196 AAACACATTCTCCTCATTAGGATAAATGATATTGATGATTTTTTTTTGCATGGAAATCTTTCCTT
* * * * * *
95859 TTCCTTATTTTCCTTAAAATCAAAGTTCATCACA-AAACTTAGACAAGCATAGATTCTCATAACA
261 TGCCTTATTTTCCTTAAAATCAAAGTTTATCTCATAAA-TAAGACAAGCATCGATTCTCGTAACA
* * * *
95923 GTCTCCATTATTTTCAGGATTGGGAACCTAAAACACAATCCCTTCATTAAGTTACATGACATTGA
325 GTCTCCATTATTTTCAAGATTGGGAACCTAAAACACATTCCCTTCATTAGGATACATGACATTGA
* * * *
95988 TGCTTTAGTGTCACAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTCTGCCTCTT
390 TGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGTCTCTT
*
96053 AAATACGAGC-AA-ATGAATAGT
455 AAATAAGA-CAAACATGAATAGT
* * * * * *
96074 TATACTAATCCTCATTCTTTTTAGCATTAGGCACCATAAACATAGTCTTCTTATTAGGATACGCG
1 CATACTAATCCCCATTCTTTTTAGGATTAGGCACCATAAACATAGTCTTCTCATAAGGATACACG
* * * *
96139 ATATTGATGTTTTAGTTTTGCAAGAAAGGCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTTTG
66 ATATTGATGCTTTGGTTTCGCAAGAAAGGCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTTCG
* * * *
96204 TGCCTCGAATGAGACAAATATGGATTTTAGTAATGATCTTCATTCATTTTGTGTTTAGGCACTAT
131 TGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTAT
*
96269 AAACACATTCTCTTCATTAGGATAAATGATATTGATGATTTTTTTTTGCATGGAAATCTTTCCTT
196 AAACACATTCTCCTCATTAGGATAAATGATATTGATGATTTTTTTTTGCATGGAAATCTTTCCTT
* * * * *
96334 TGCCTTATTTTCCTTAAAATCAAAGTTCATCCCGTAAACAAGACAAGCATCGATTCTCGTAACAA
261 TGCCTTATTTTCCTTAAAATCAAAGTTTATCTCATAAATAAGACAAGCATCGATTCTCGTAACAG
*
96399 TCCCCATTATTTTCAAGATTGGGAACCTAAAACACATTC
326 TCTCCATTATTTTCAAGATTGGGAACCTAAAACACATTC
96438 TGATGAAAAC
Statistics
Matches: 7036, Mismatches: 1184, Indels: 373
0.82 0.14 0.04
Matches are distributed among these distances:
442 3 0.00
443 90 0.01
444 94 0.01
445 73 0.01
446 20 0.00
447 2 0.00
448 3 0.00
449 75 0.01
450 3 0.00
451 3 0.00
455 5 0.00
456 1 0.00
458 2 0.00
459 3 0.00
461 2 0.00
462 2 0.00
463 2 0.00
464 2 0.00
465 63 0.01
466 18 0.00
467 2 0.00
468 5 0.00
469 362 0.05
470 179 0.03
471 290 0.04
472 96 0.01
473 401 0.06
474 974 0.14
475 1363 0.19
476 1505 0.21
477 668 0.09
478 223 0.03
479 169 0.02
480 79 0.01
481 165 0.02
482 87 0.01
483 2 0.00
ACGTcount: A:0.32, C:0.18, G:0.14, T:0.37
Consensus pattern (476 bp):
CATACTAATCCCCATTCTTTTTAGGATTAGGCACCATAAACATAGTCTTCTCATAAGGATACACG
ATATTGATGCTTTGGTTTCGCAAGAAAGGCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTTCG
TGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTAT
AAACACATTCTCCTCATTAGGATAAATGATATTGATGATTTTTTTTTGCATGGAAATCTTTCCTT
TGCCTTATTTTCCTTAAAATCAAAGTTTATCTCATAAATAAGACAAGCATCGATTCTCGTAACAG
TCTCCATTATTTTCAAGATTGGGAACCTAAAACACATTCCCTTCATTAGGATACATGACATTGAT
GCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTA
AATAAGACAAACATGAATAGT
Found at i:95817 original size:158 final size:156
Alignment explanation
Indices: 95649--96310 Score: 369
Period size: 158 Copynumber: 4.2 Consensus size: 156
95639 ATATAGCCTA
* * *
95649 CTCATAAGGATACACGATATTGATGCTTTTGTTTCGCAAAAAATGCTTTCTTCCCACCAATTTTT
1 CTCATTAGGATACATGATATTGATGATTTTGTTTCGCAAAAAATGCTTTCTTCCCACCAATTTTT
*
95714 TTAAAGTCTAAGTTCATGCCTCAAATTAGACAAACATGGATTCTAGTAATGATCTCCATTCATTT
66 TTAAAGTCAAAGTTCATGCCTCAAATTAGACAAACATGGATTCTA-TAATGATCTCCATTCATTT
95779 TGTGATTAGGCACTCTAAACACATTCTC
130 TGTGATTAGGCAC-CTAAACACATTCTC
* * * * ** * ** **
95807 CTCACTAGGATAAATGGTATTGATGATTTT-TTTTGCATGGAAAT-CTCTCCTTTTC-CTTATTT
1 CTCATTAGGATACATGATATTGATGATTTTGTTTCGCA-AAAAATGCT-TTCTTCCCACCAATTT
* * * * * *
95869 TCCTTAAAATCAAAGTTCAT-CAC-AAAACTTAGACAAGCATAGATTCTCATAA-CAGTCTCCAT
64 T-TTTAAAGTCAAAGTTCATGC-CTCAAA-TTAGACAAACATGGATTCT-ATAATGA-TCTCCAT
* * *
95931 T-ATTTTCAG-GATTGGGAACCTAAAACACAATC-C
124 TCATTTT--GTGATTAGGCACCT-AAACACATTCTC
* * * * * * * * *
95964 CTTCATTAAGTTACATGACATTGATGCTTTAGTGTCACAAGAAAA-GCTTTTCTTTCCACC-GTT
1 C-TCATTAGGATACATGATATTGATGATTTTGTTTCGCAA-AAAATGC-TTTCTTCCCACCAATT
* * * *
96027 TTTGATAGAA-TCAAAG-TC-TGCCTCTTAAA-TACGAGC-AA-ATGAATAGT-TATACTAATC-
63 TTT-TTA-AAGTCAAAGTTCATGCCTC--AAATTA-GA-CAAACATGGAT--TCTATAATGATCT
* * *
96084 CTCATTC-TTTT-TAGCATTAGGCACCATAAACATAGTCTT
120 C-CATTCATTTTGT-G-ATTAGGCACC-TAAACACATTCTC
* ** * * *
96123 CTTATTAGGATACGCGATATTGATG-TTTTAGTTTTGCAAGAAAGGCTTTCTTCCCACCAATTTT
1 CTCATTAGGATACATGATATTGATGATTTT-GTTTCGCAAAAAATGCTTTCTTCCCACCAATTTT
* * ** * * * * *
96187 TGTAAAGTCTAAGTTTGTGCCTCGAATGAGACAAATATGGATTTTAGTAATGATCTTCATTCATT
65 TTTAAAGTCAAAGTTCATGCCTCAAATTAGACAAACATGGATTCTA-TAATGATCTCCATTCATT
* *
96252 TTGTGTTTAGGCACTATAAACACATTCTC
129 TTGTGATTAGGCAC-CTAAACACATTCTC
* *
96281 TTCATTAGGATAAATGATATTGATGATTTT
1 CTCATTAGGATACATGATATTGATGATTTT
96311 TTTTTGCATG
Statistics
Matches: 368, Mismatches: 86, Indels: 99
0.67 0.16 0.18
Matches are distributed among these distances:
156 4 0.01
157 64 0.17
158 240 0.65
159 50 0.14
160 10 0.03
ACGTcount: A:0.31, C:0.18, G:0.14, T:0.37
Consensus pattern (156 bp):
CTCATTAGGATACATGATATTGATGATTTTGTTTCGCAAAAAATGCTTTCTTCCCACCAATTTTT
TTAAAGTCAAAGTTCATGCCTCAAATTAGACAAACATGGATTCTATAATGATCTCCATTCATTTT
GTGATTAGGCACCTAAACACATTCTC
Found at i:100867 original size:42 final size:42
Alignment explanation
Indices: 100812--100930 Score: 193
Period size: 42 Copynumber: 2.8 Consensus size: 42
100802 TTCTTCTCTC
* *
100812 CTCCTCCTGTCATCCCTCCTCTCTCTATTATCTCTCCTGTCT
1 CTCCTCCTATCATCCCTCCTCTCTCTACTATCTCTCCTGTCT
*
100854 CTCCTCCTATCATCCCTCCTATCTCTACTATCTCTCCTGTCT
1 CTCCTCCTATCATCCCTCCTCTCTCTACTATCTCTCCTGTCT
* *
100896 CTCCTCCTATCATCCCTCCTCTCTCTTCTTTCTCT
1 CTCCTCCTATCATCCCTCCTCTCTCTACTATCTCT
100931 TTGAGGGCTA
Statistics
Matches: 71, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
42 71 1.00
ACGTcount: A:0.08, C:0.46, G:0.03, T:0.43
Consensus pattern (42 bp):
CTCCTCCTATCATCCCTCCTCTCTCTACTATCTCTCCTGTCT
Found at i:100871 original size:12 final size:11
Alignment explanation
Indices: 100845--100920 Score: 52
Period size: 12 Copynumber: 6.9 Consensus size: 11
100835 TCTATTATCT
*
100845 CTCCTGTCTCTC
1 CTCCTATCTC-C
100857 CTCCTATCATCC
1 CTCCTATC-TCC
100869 CTCCTATCT--
1 CTCCTATCTCC
*
100878 CTACTATCT--
1 CTCCTATCTCC
*
100887 CTCCTGTCTCTC
1 CTCCTATCTC-C
100899 CTCCTATCATCC
1 CTCCTATC-TCC
*
100911 CTCCTCTCTC
1 CTCCTATCTC
100921 TTCTTTCTCT
Statistics
Matches: 53, Mismatches: 6, Indels: 11
0.76 0.09 0.16
Matches are distributed among these distances:
9 15 0.28
11 3 0.06
12 31 0.58
13 4 0.08
ACGTcount: A:0.09, C:0.49, G:0.03, T:0.39
Consensus pattern (11 bp):
CTCCTATCTCC
Found at i:100872 original size:24 final size:24
Alignment explanation
Indices: 100836--100921 Score: 85
Period size: 24 Copynumber: 3.8 Consensus size: 24
100826 CCTCCTCTCT
* *
100836 CTATTATCTCTCCTGTCTCTCCTC
1 CTATCATCCCTCCTGTCTCTCCTC
* *
100860 CTATCATCCCTCC--TATCT-CTA
1 CTATCATCCCTCCTGTCTCTCCTC
100881 CTATC-T--CTCCTGTCTCTCCTC
1 CTATCATCCCTCCTGTCTCTCCTC
*
100902 CTATCATCCCTCCTCTCTCT
1 CTATCATCCCTCCTGTCTCT
100922 TCTTTCTCTT
Statistics
Matches: 49, Mismatches: 7, Indels: 12
0.72 0.10 0.18
Matches are distributed among these distances:
18 4 0.08
20 5 0.10
21 14 0.29
22 5 0.10
24 21 0.43
ACGTcount: A:0.10, C:0.45, G:0.02, T:0.42
Consensus pattern (24 bp):
CTATCATCCCTCCTGTCTCTCCTC
Found at i:100896 original size:18 final size:18
Alignment explanation
Indices: 100827--100897 Score: 52
Period size: 18 Copynumber: 3.6 Consensus size: 18
100817 CCTGTCATCC
* *
100827 CTCCTCTCTCTATTATCT
1 CTCCTGTCTCTACTATCT
*
100845 CTCCTGTCTCTCCTCCTATCAT
1 CTCCTG--TCT-CTACTATC-T
*
100867 CCCTCCTATCTCTACTATCT
1 --CTCCTGTCTCTACTATCT
100887 CTCCTGTCTCT
1 CTCCTGTCTCT
100898 CCTCCTATCA
Statistics
Matches: 41, Mismatches: 6, Indels: 12
0.69 0.10 0.20
Matches are distributed among these distances:
18 15 0.37
20 4 0.10
21 13 0.32
22 4 0.10
24 5 0.12
ACGTcount: A:0.10, C:0.44, G:0.03, T:0.44
Consensus pattern (18 bp):
CTCCTGTCTCTACTATCT
Found at i:103284 original size:158 final size:156
Alignment explanation
Indices: 103122--108916 Score: 855
Period size: 158 Copynumber: 36.7 Consensus size: 156
103112 ACATAGCCTA
* * *
103122 CTCATAAGGATACATGATATTGATGCTTTTGTTTCGCAAGAAATGCTTTCTTCCCACCAATTTTT
1 CTCATTAGGATACATGATATTGATGCTTTTGTTTCGCAAGAAAAGCTTTCTTTCCACCAATTTTT
*
103187 GTAAAGTCTAAGTTCATGCCTCAAATGAGACAAACATGGATTCTAGTAATAATCTCCATTCATTC
66 GTAAA-TCAAAGTTCAT-CCTCAAATGAGACAAACATGGATTCTAGTAATAATCTCCATTCATTC
*
103252 TGTGATTAGGCATTATAAACACATTCTC
129 TGTGATTAGGCACTATAAACACATTCTC
* * * * * * * * **
103280 CTCATTAGGATAAATGATATTGATGATTTT-TTTTGCATGGAAATCTCTCCTTTTC-CTTATTTT
1 CTCATTAGGATACATGATATTGATGCTTTTGTTTCGCAAGAAAAGCT-TTCTTTCCACCAATTTT
* * * * * * *
103343 CCT-TAAAATCAAAGTTCATCACAT-AACTAAGACAAGCATAGATTCTCGTAACAGTCTCCATT-
65 --TGT-AAATCAAAGTTCATC-C-TCAAATGAGACAAACATGGATTCTAGTAATAATCTCCATTC
* * *
103405 ATTTTCAG-GATTAGGAACCTA-AAACACAATC-C
125 A--TTCTGTGATTAGGCA-CTATAAACACATTCTC
* * * * * * *
103437 CTTCATTAAGTTACATGACATTCATGCTTTGGTGTT-ACAAGAAAAGCTTTTCTTTCCACC-GTT
1 C-TCATTAGGATACATGATATTGATGCTTTTGT-TTCGCAAGAAAAGC-TTTCTTTCCACCAATT
* *** * *
103500 TTTGATAGAATCAAAG-TC-TGCCTCTTAAAT-AGGAGCAAATAAATAGT-TA-TACTAATC-CT
63 TTTG-TA-AATCAAAGTTCAT-CCTC--AAATGA-GA-CAAACATGGATTCTAGTAATAATCTC-
* * * * * *
103559 CATTCTTTTTAG-GATTAGGCACCATAAACATAGTCTT
120 CATTCATTCT-GTGATTAGGCACTATAAACACATTCTC
* * * * * **
103596 CTCATTAGGATACGTAATATTGATG-TTTTGGTTTCGCAAGAAAGGCTTTCTTCCCACCAAGTAC
1 CTCATTAGGATACATGATATTGATGCTTTT-GTTTCGCAAGAAAAGCTTTCTTTCCACCAATTTT
* * * * * *
103660 TGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAATATGGATTTTAGTAATGATCTTCATTCATT
65 TGTAAA-TCAAAGTTCAT-CCTCAAATGAGACAAACATGGATTCTAGTAATAATCTCCATTCATT
*
103725 TTGTGATTAGGCACTATAAACACATTCTC
128 CTGTGATTAGGCACTATAAACACATTCTC
* * * * * * * * * **
103754 TTCATTAGGATAAATGATATTGATGATTTTTTTTTGCATGGAAATCTTTCCTTTGC-CTTATTTT
1 CTCATTAGGATACATGATATTGATGCTTTTGTTTCGCAAGAAAAGCTTT-CTTTCCACCAATTTT
** * * * *
103818 CCT-TAAAATCAAAGTTCATCC-CATAAACAAGACAAGCATCGATTCTCGTAACAATCTCCATT-
65 --TGT-AAATCAAAGTTCATCCTC--AAATGAGACAAACATGGATTCTAGTAATAATCTCCATTC
* ** * *
103880 ATTTTCAAGATTGGGAACCTA-AAACACATTC-C
125 ATTCT-GTGATTAGGCA-CTATAAACACATTCTC
* * * * * * *
103912 CTTCA-TAAGATTACATGACATTGATAG-TTTGGTGTCACAGGAAAAGCTTTTCTTTCCACC-GT
1 C-TCATTAGGA-TACATGATATTGAT-GCTTTTGTTTCGCAAGAAAAGC-TTTCTTTCCACCAAT
* * * * * * * *
103974 TTTTGATAGAATC-AAGATTTATCTTTTAAAT-AGCAAAAACTTGAATACTCA-TACTAATC-CT
62 TTTTG-TA-AATCAAAG-TTCATC-CTCAAATGAG-ACAAACATGGATTCT-AGTAATAATCTC-
* * * * * * *
104035 TATTCTTTTCT-AGATTAGGCACCATAAACATAGTCTA
120 CATTC-ATTCTGTGATTAGGCACTATAAACACATTCTC
* * * * * * * *
104072 CTCATAAGGATACATGATATTGATGCTTTGGTTTCACAAGAAAGGCTTT-TTCCCTCTAAATTTT
1 CTCATTAGGATACATGATATTGATGCTTTTGTTTCGCAAGAAAAGCTTTCTTTCCACCAATTTTT
* * ** * * * * * *
104136 GTAAAGTCTATGTTTGTGCCTCAAATGAGACAAACATGGATTCTAGTGATGATTTTCTTTAATT-
66 GTAAA-TCAAAGTTCAT-CCTCAAATGAGACAAACATGGATTCTAGTAATAATCTCCATTCATTC
* *
104200 TAGTGATTTGGCACTACAAACACATTCTC
129 T-GTGATTAGGCACTATAAACACATTCTC
* * * * * * * * *
104229 GTTATTAGGATAAATGATATTGAT-CATTTTCTTT--TAAGTGAAAATCTTTTTTTGC-CCTATT
1 CTCATTAGGATACATGATATTGATGC-TTTTGTTTCGCAA--GAAAAGCTTTCTTTCCACCAATT
* * * * *
104290 TTTCCTAAAATCAAAGTTCATCC-CATATGTAAGACAAGTA-AT-GATACTCGTAATAGTCTCCA
63 TTT-GT-AAATCAAAGTTCATCCTCAAATG--AGACAA--ACATGGATTCTAGTAATAATCTCCA
* * *
104352 TT-ATTTTCAG-GATTGGGAACCTA-AAACACATTC-C
122 TTCA--TTCTGTGATTAGGCA-CTATAAACACATTCTC
* * * * * * *
104386 CTTCATTAGGATACATGACAATGATGC-TTTGATGCTGTAAGAAAAGCTTTTCTTTCTACC-GTT
1 C-TCATTAGGATACATGATATTGATGCTTTTGTTTC-GCAAGAAAAGC-TTTCTTTCCACCAATT
* * * * * *
104449 TTTGATGGAATCAAAGTTTATCTCTTAAATAAGACAAACAT-TA-AC-AGTCATACTAATC-CCA
63 TTTG-T-AAATCAAAGTTCATC-CTCAAATGAGACAAACATGGATTCTAGT-A-A-TAATCTCC-
* * * * *
104510 ATTCTTTTCTG-GAGTAGGCA-TAATAAACATAGTCTT
121 ATTC-ATTCTGTGATTAGGCACT-ATAAACACATTCTC
* ** * * * * * * * *
104546 CTTAAAAGGATGCACGATATTGATGCTTTGGTATT-GCACGAAAGGCTTTCTTCCCA-CAAATCT
1 CTCATTAGGATACATGATATTGATGCTTTTGT-TTCGCAAGAAAAGCTTTCTTTCCACCAATTTT
* * * *
104609 TGTAAATTCTAAGTTCATGCCTTAAATGAGACAAAAATGGATTCTAGTAA-AGATCTTCATTCAT
65 TGTAAA-TCAAAGTTCAT-CCTCAAATGAGACAAACATGGATTCTAGTAATA-ATCTCCATTCAT
* **
104673 TTTGTCCTTAGGCACTATAAACACATTCTC
127 TCTGTGATTAGGCACTATAAACACATTCTC
* * * *** * * ** * * * * *
104703 CTCATTATGATAAATGGTATTGAAAATTTTCTTTTGCCTGGAAATCTTTTTTTGC-CCTATTTTC
1 CTCATTAGGATACATGATATTGATGCTTTTGTTTCGCAAGAAAAGCTTTCTTTCCACCAATTTT-
* ** ** * * *
104767 CT-TAAAATTAAAGTTCATCC-CATAA-GCAAGACAAGTAACGATACTCGTAATAGTCTCCATT-
65 -TGT-AAATCAAAGTTCATCCTCA-AATG--AGACAAACATGGATTCTAGTAATAATCTCCATTC
* ** * * *
104828 ATTTTCAAGATT-GGGAATGTAAAACACATTC-C
125 ATTCT-GTGATTAGGCACTAT-AAACACATTCTC
* * * * *
104860 CTTTATTAGGATACATGACATTGATGCTTTGGTGTCACAAGAAAAGCTTTTCTTTCCACC-ATTT
1 C-TCATTAGGATACATGATATTGATGCTTTTGTTTCGCAAGAAAAGC-TTTCTTTCCACCAATTT
* * * * * * *
104924 TTGATAGAATCAAAATTTATCTCTTAAAT-AGGA-AAACTTGAATACTCA-TACTAATC-CCTAT
64 TTG-TA-AATCAAAGTTCATC-CTCAAATGA-GACAAACATGGATTCT-AGTAATAATCTCC-AT
* * * * * *
104985 TCTTTTCT-AGATTAGGCACCATAAACATAGTCTT
123 TC-ATTCTGTGATTAGGCACTATAAACACATTCTC
* * * * *
105019 CTCATAAGGATACACGATATTGATGCTTTGGTTTCGCAAGAAAAGCTTT-TTTCCGTCCAACTTT
1 CTCATTAGGATACATGATATTGATGCTTTTGTTTCGCAAGAAAAGCTTTCTTTCC-ACCAATTTT
* * * * * * * * *
105083 TGTAAAGTCTAAGTTCGTGCCTCACATGAGACAAACATGGATTCTAATAATGATTTTCTTTAATT
65 TGTAAA-TCAAAGTTCAT-CCTCAAATGAGACAAACATGGATTCTAGTAATAATCTCCATTCATT
*
105148 TTGTGATGT-GGCACTAT-AACACATTCTC
128 CTGTGAT-TAGGCACTATAAACACATTCTC
* * * * * * * ***
105176 CTCATTAGGATAAATGATATTGATGATTTT-TTATTGCATGGAAATCTTTCCTTTTC-TTTATTT
1 CTCATTAGGATACATGATATTGATGCTTTTGTT-TCGCAAGAAAAGCTTT-CTTTCCACCAATTT
** * * ** * * * *
105239 TCCCTAAAATCAAAGTTAATTCCGT-AAATAAGACAAGTATCGATTCTCA-TTATAGTCTCTATT
64 T-TGT-AAATCAAAGTTCA-TCC-TCAAATGAGACAAACATGGATTCT-AGTAATAATCTCCATT
* ** * *
105302 -ATTTTCAAGATTGGGAACCTA-AAACACATTC-C
124 CATTCT-GTGATTAGGCA-CTATAAACACATTCTC
** * * * * * ** * *
105334 CTTCATTAGCTTACTTGACATTGATACTTTGGTGTCATAATAAAAGCTTTTCTTTCCACC-GTTT
1 C-TCATTAGGATACATGATATTGATGCTTTTGTTTCGCAAGAAAAGC-TTTCTTTCCACCAATTT
* * * ** * *
105398 TTGATAGAATCAAA-TTTATCTCTTAAAT-AGGACAAACTTAAATACTCA-TAAAAATC-CCTAT
64 TTG-TA-AATCAAAGTTCATC-CTCAAATGA-GACAAACATGGATTCT-AGTAATAATCTCC-AT
* * * * * *
105459 TCTTTTCT-AGATTAGGCAATATAAACATAGTCTG
123 TC-ATTCTGTGATTAGGCACTATAAACACATTCTC
* * * * * * * *
105493 CTCATAAGAATACATGATATTGAAGCTTTGGTTTTGCAAGAAAGGCTTT-TTTCCCTCCAACTTT
1 CTCATTAGGATACATGATATTGATGCTTTTGTTTCGCAAGAAAAGCTTTCTTT-CCACCAATTTT
* * * * * * * *
105557 TGTAAAGTCTAAGTTCGTGCCTCAAATGCA-AC-AACAAGGATTCTAGTAATGATTTTCTTTAAT
65 TGTAAA-TCAAAGTTCAT-CCTCAAATG-AGACAAACATGGATTCTAGTAATAATCTCCATTCAT
* * *
105620 TTTCTGATTTGGCACTATAAACACATTCTC
127 TCTGTGATTAGGCACTATAAACACATTCTC
* * * * * * * **
105650 CTCATTAGGATAAATGATATTGATGATTTT-TTTTGCATGGAAATCTTTCCTTTTC-CTTATTTT
1 CTCATTAGGATACATGATATTGATGCTTTTGTTTCGCAAGAAAAGCTTT-CTTTCCACCAATTTT
* * * * *
105713 CCT-TAAAATCAATGTTTATCC-CATAAAGAAGA-AAAGCACT-GATTCTCA-TAACAGTCTCCA
65 --TGT-AAATCAAAGTTCATCCTCA-AATG-AGACAAA-CA-TGGATTCT-AGTAATAATCTCCA
* * ** * * *
105773 TT-ATTTTCTAGATCGGGAACCTA-AAACGCATTTTC
122 TTCATTCTGT-GATTAGGCA-CTATAAACACATTCTC
* * * * ** * *
105808 TTCATTAGGATACATGACATTGATGCTTTGGTGTCATAAAAAAAGCTTTTCTTTCTACC-ATTTT
1 CTCATTAGGATACATGATATTGATGCTTTTGTTTCGCAAGAAAAGC-TTTCTTTCCACCAATTTT
* ** * * * *
105872 TGAGGAAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATAGTC-A-TACTAATC-CCAATT
65 T--GTAAATCAAAGTTCATC-CTCAAATGAGACAAACATGGAT--TCTAGTAATAATCTCC-ATT
* * ** * * *
105934 CTTTTCTG-AAGCAGGCACTATAAACATAGTCTT
124 C-ATTCTGTGATTAGGCACTATAAACACATTCTC
** * * * * * * * * *
105967 CTCAAAAGGATGCACGATATCGATGCTTTGGTTTTGCAAGAAAGGCTTTCTTCCCACAAATTTTG
1 CTCATTAGGATACATGATATTGATGCTTTTGTTTCGCAAGAAAAGCTTTCTTTCCACCAATTTTT
* * * * * * **
106032 GAAAAGTCTAAGTTCATGCCTTAAATAAGGCAAAAATGGATTCTAGTAA-AGATCTTGATTCATT
66 GTAAA-TCAAAGTTCAT-CCTCAAATGAGACAAACATGGATTCTAGTAATA-ATCTCCATTCATT
* *
106096 TTGTCATTAGGCACTATAAACACATTCTC
128 CTGTGATTAGGCACTATAAACACATTCTC
* * *** * * ** * * *
106125 CTCATTAGGATAAATGGTATTGAAAATTTTCTTTTGCTTGAAAATCTTTTCTTTGC-CCTATTTT
1 CTCATTAGGATACATGATATTGATGCTTTTGTTTCGCAAGAAAAGC-TTTCTTTCCACCAATTTT
* * * * ** *
106189 CCT-TAAAATCAAAGTTTAACTCTGAAATGAGACAAGCATCAATTCTCA-TAATAGTCTCCATTC
65 --TGT-AAATCAAAGTTCATC-CTCAAATGAGACAAACATGGATTCT-AGTAATAATCTCCATTC
* * * * *
106252 TTTTCAG-GATT-GTG-ACCCAAAAATACATTC-C
125 -ATTCTGTGATTAG-GCA-CTATAAACACATTCTC
* * * * *
106283 CTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAG-AAAGTTTTTCTTT--GCC---TT
1 C-TCATTAGGATACATGATATTGATGCTTTTGTTTCGCAAGAAAAG-CTTTCTTTCCACCAATTT
* * * * ** *
106342 AT-T---T-----TTCAT--T---AGGATACAAGCATTAATTGTCTTGT--TAATCCT-CATTCT
64 TTGTAAATCAAAGTTCATCCTCAAATGAGACAAACATGGA-T-TCTAGTAATAAT-CTCCATTC-
* * ** * * *
106390 TTTCAG-GATTAGGCACCCTAAACATAGTCTT
125 ATTCTGTGATTAGGCACTATAAACACATTCTC
* * * *
106421 CTCGTTAGGATACGTGATATTGAAG-TTTTGGTTTCGCAAGAAAGGCTTTC-TTCCTACCAATTT
1 CTCATTAGGATACATGATATTGATGCTTTT-GTTTCGCAAGAAAAGCTTTCTTTCC-ACCAATTT
* * * * ** * * **
106484 TTGTTGAGTCTAAGTTCGTACCTCAAATGAGACGGATATGGATTCTAGTAATGATCTTTATTCAT
64 TTG-TAAATCAAAGTTCAT-CCTCAAATGAGACAAACATGGATTCTAGTAATAATCTCCATTCAT
*
106549 TTTGTGATTAGGCACTATAAACACATTCTC
127 TCTGTGATTAGGCACTATAAACACATTCTC
* * * * * * * * **
106579 CTCTTTAGGATAAATGATATTGATGATTTT-TTTTG-AGTGGAAATCTTTCTCTTGC-CTTATTT
1 CTCATTAGGATACATGATATTGATGCTTTTGTTTCGCA-AGAAAAGCTTTCT-TTCCACCAATTT
** ** * *
106641 TCCT-TAAAATCAAAGTTCATCC-CATAAACAAGACAGGCATCGATTCTCA-TAATAGTCTCCAT
64 T--TGT-AAATCAAAGTTCATCCTC--AAATGAGACAAACATGGATTCT-AGTAATAATCTCCAT
* ** * * * *
106703 T-ATTTTCAAGATTTGGAAGCTA-AAATACTTTC-C
123 TCATTCT-GTGATTAGGCA-CTATAAACACATTCTC
* * * * * * *
106736 CTTCATTAGGTTACACGACATTGATACTTTGGTGTCACAAGAAAAGCTTTTCTTTCCACC-ATTT
1 C-TCATTAGGATACATGATATTGATGCTTTTGTTTCGCAAGAAAAGC-TTTCTTTCCACCAATTT
* * * * * * * *
106800 TTGATAGAATCAAAATTTATCTCTTAAATAAGACAAACTTGAATACTCA-TACTAATC-CCTATT
64 TTG-TA-AATCAAAGTTCATC-CTCAAATGAGACAAACATGGATTCT-AGTAATAATCTCC-ATT
* * * * * *
106863 CTTTTCT-AGATTAGGCACCATAAACATAGTCTT
124 C-ATTCTGTGATTAGGCACTATAAACACATTCTC
* * * * * * * *
106896 CTTA-TAGTGATACACGATATTCACGCTTTGGTTTCGCAA-AAAAGGCTTT-TTCCCACCGAGTT
1 CTCATTAG-GATACATGATATTGATGCTTTTGTTTCGCAAGAAAA-GCTTTCTTTCCACCAATTT
* * * * * * * *
106958 TTGTAAAGTCTATGTCCATGCCTCAAGTAAGACAAACATGGATTCTAGTAATGATGTTCATTCAT
64 TTGTAAA-TCAAAGTTCAT-CCTCAAATGAGACAAACATGGATTCTAGTAATAATCTCCATTCAT
* * *
107023 TTTGTGATTAGGCAATATAAATACATTCTC
127 TCTGTGATTAGGCACTATAAACACATTCTC
* * * * * * * * *
107053 CTCACTAGGGTAAAAGATATTGATGATTTTCTTTTGCATGGAAAA-CTTTTCTTTCC-CCTATTT
1 CTCATTAGGATACATGATATTGATGCTTTTGTTTCGCA-AGAAAAGC-TTTCTTTCCACCAATTT
* * ** * * *
107116 TTCGTAAAATCAAAGTTTATCTCTTAAAAAAGACAACCATCGATTCTCA-TAACT-GTCTCCATT
64 TT-GT-AAATCAAAGTTCATC-CTCAAATGAGACAAACATGGATTCT-AGTAA-TAATCTCCATT
* * * * * *
107179 C-TTTTCATGATTGGGAACCAAAAACA-ATTC-C
124 CATTCT-GTGATTAGGCACTATAAACACATTCTC
* * * * *
107210 TTTCATTAGGATACATGACATTGATGCTTTGGTGTT-GCAAGAAAAGCTTTTCTTTCCTCC-GTT
1 -CTCATTAGGATACATGATATTGATGCTTTTGT-TTCGCAAGAAAAGC-TTTCTTTCCACCAATT
* * * ** *
107273 TTTGATAAAATCAAAATT--TGCCTATTAAAT-AGGACAAAAATTAATAGTC-A-TACTAATC-C
63 TTTG-T-AAATCAAAGTTCAT-CC--TCAAATGA-GACAAACATGGAT--TCTAGTAATAATCTC
* * * * * * * * *
107332 CTATT-TTTTTGGGATTACGCAAC-CTAAACATAGTATT
120 C-ATTCATTCTGTGATTAGGC-ACTATAAACACATTCTC
* * * * * * *
107369 CTCATAAGGATACATGATATTGATAC-TTTGCTTTCACAAGAAAGGCTTTCTTGCCGCTAATTTT
1 CTCATTAGGATACATGATATTGATGCTTTTG-TTTCGCAAGAAAAGCTTTCTTTCCACCAATTTT
* * ** * * * *
107433 GGTAAAGTCTAAGTTTGTGCCTCAAATGAGACAAATATGGATTCTAGTAATGATCTTCATTCTTT
65 TGTAAA-TCAAAGTTCAT-CCTCAAATGAGACAAACATGGATTCTAGTAATAATCTCCATTCATT
* * *
107498 TTATGATTAGGCACTATAAACACAATCTC
128 CTGTGATTAGGCACTATAAACACATTCTC
* ** ** * * * * ** *
107527 CTCCA-TAGGATAAAT-ATTATTGATAATTTACTTTTGCATGGAAATCTTTTCTTT-GTCCTATT
1 CT-CATTAGGATACATGA-TATTGATGCTTTTGTTTCGCAAGAAAAGC-TTTCTTTCCACCAATT
* * ** * *
107589 TTCCT-TCAAATCAAAGTTCATCCTATAAATAAGACAAGTATCGATTCTCA-TAATAGTCTCCAT
63 TT--TGT-AAATCAAAGTTCATCCT-CAAATGAGACAAACATGGATTCT-AGTAATAATCTCCAT
* ** * * * * *
107652 TCCTT-TCAAGATTGGGAACCAAAAAGACATTC-C
123 TCATTCT-GTGATTAGGCACTATAAACACATTCTC
* * * * * * * ***
107685 ATTCATTAGGATACAAGACATTGATGCTTTGGTGTCGCAA-CAAAGCTTTTGTTTCC-CCTGGTT
1 -CTCATTAGGATACATGATATTGATGCTTTTGTTTCGCAAGAAAAGC-TTTCTTTCCACCAATTT
* * ** * * * * * * ** *
107748 TGGTAGAATCAAAGTT-TTGCTCTTGAATAACACAAAAAAGAATTGT-CCAACTAATCCCCATTC
64 TTGTA-AATCAAAGTTCAT-C-CTCAAATGAGACAAACATGGATTCTAGTAA-TAATCTCCATTC
* ** * ** * * ** *
107811 -TTTTCAAGATTTGGTGCCATAAACATAGCCTA
125 ATTCT-GTGATTAGGCACTATAAACACATTCTC
* * * * **** *
107843 CTCATAAGGATACGTGATATTGATGCTTTGGTTTCGCAAG-AAAGACTTTCTTCCCGGTGACTTT
1 CTCATTAGGATACATGATATTGATGCTTTTGTTTCGCAAGAAAAG-CTTTCTTTCCACCAATTTT
* * * * * * * * *
107907 TGTAAATTCTAAGTTCATGCCCCAAATAAGACAAACATGGATCCTAGTAATGATTTTCTTTAATT
65 TGTAAA-TCAAAGTTCAT-CCTCAAATGAGACAAACATGGATTCTAGTAATAATCTCCATTCATT
* *
107972 TTGTGATTTGGCACTATAAACACATTCTC
128 CTGTGATTAGGCACTATAAACACATTCTC
* * * ** * * *
108001 CTCATT-GCGATAAATGATATTGCTGATTTT-TTT-GCTTGGAAATCTTTACTTTGCCA--TATT
1 CTCATTAG-GATACATGATATTGATGCTTTTGTTTCGCAAGAAAAGCTTT-CTTT-CCACCAATT
* * * * * * * * *
108061 TTCCT-TAAAATCAAAGTTCATCCCTTAAGT-ATGATAAGCATTGATCCTCGTAACAGTCTCCAT
63 TT--TGT-AAATCAAAGTTCAT-CCTCAAATGA-GACAAACATGGATTCTAGTAATAATCTCCAT
** * * *
108124 TTTTTTTAG-GATTGGGAACCTA-AAACACATT-TC
123 TCATTCT-GTGATTAGGCA-CTATAAACACATTCTC
* * * * ** * *
108157 CTTCATTAGGATACAAGACATTGATGCTTTGGTGTCATAAGAAAAGCTTTTCGTTCCACC-GTTT
1 C-TCATTAGGATACATGATATTGATGCTTTTGTTTCGCAAGAAAAGC-TTTCTTTCCACCAATTT
** * * * * **
108221 TTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAATATGAATAGTC-A-TACCAATC-CCAAT
64 TTG-TA-AATCAAAGTTCATC-CTCAAATGAGACAAACATGGAT--TCTAGTAATAATCTCC-AT
* * ** * * *
108283 TC-TTTTAG-GAATAGGTGCTATAAACATAGTCTT
123 TCATTCT-GTGATTAGGCACTATAAACACATTCTC
** * * * * * * * *
108316 CTCAAAAGGATGCACGATATTAATGC-TTTGTTTTTGTAAGAAAGGCTTTGTTGCCACCAATTTT
1 CTCATTAGGATACATGATATTGATGCTTTTG-TTTCGCAAGAAAAGCTTTCTTTCCACCAATTTT
* * * * *
108380 TGTAAATTCTAAGTTCGTGCCTTAAATGAGACAAAAATGGATTCTAGTAA-ATATCTTCATTCAT
65 TGTAAA-TCAAAGTTCAT-CCTCAAATGAGACAAACATGGATTCTAGTAATA-ATCTCCATTCAT
* *
108444 TTTGTGA-TAGGCACTATAAATACATTCTC
127 TCTGTGATTAGGCACTATAAACACATTCTC
* *** * * * * * *
108473 CTCATTAGGATAAATGATA-TGAAAAATTTTCTTTCG-AATGGAAACCTTTTCTCTGC-CCTATT
1 CTCATTAGGATACATGATATTG-ATGCTTTTGTTTCGCAA-GAAAAGC-TTTCTTTCCACCAATT
* * * * * * * * *
108535 TTCCT-TAAAATCAAACTTTAACTCTTAAATTAGGCAAGCATCGATTCTAGTAACAATCTCCATT
63 TT--TGT-AAATCAAAGTTCATC-CTCAAATGAGACAAACATGGATTCTAGTAATAATCTCCATT
* * * * *
108599 C-TTTTCATGATT-GTGAACCAAAAACACATTC-C
124 CATTCT-GTGATTAG-GCACTATAAACACATTCTC
* * * * * *
108631 CTTCATTAGGATACATGACATTGATGCTTTGGTGTCGTAAG-AACGTTTTTCTTTCCATCC--TT
1 C-TCATTAGGATACATGATATTGATGCTTTTGTTTCGCAAGAAAAG-CTTTCTTTCCA-CCAATT
* *
108693 TTTGATAGAATCAAAGTTCGTCTCTTAAATAAGACAAACATGAGACAAACATGGTCTTCTCA-TA
63 TTTG-TA-AATCAAAGTTCATC-C-----T----C-AA-ATGAGACAAACATGG-ATTCT-AGTA
* * * ** * * *
108757 CTAATC-CTCATTC-TTTTTTGGATTAGGCACCGTAAACATAGTCTT
112 ATAATCTC-CATTCATTCTGT-GATTAGGCACTATAAACACATTCTC
* * * * * * *
108802 CTTA-TAGGGATACATGATATTGATGCTTTGGTTTCGCAAGAAAGGGTTTCTTCCCACTAATTTA
1 CTCATTA-GGATACATGATATTGATGCTTTTGTTTCGCAAGAAAAGCTTTCTTTCCACCAATTTT
* *
108866 TGTAAAGTCTAAGTTCA-CGCATCTAATGAGACAAACATGGATTCTAGTAAT
65 TGTAAA-TCAAAGTTCATC-C-TCAAATGAGACAAACATGGATTCTAGTAAT
108917 GATCAAAGTT
Statistics
Matches: 3966, Mismatches: 1205, Indels: 932
0.65 0.20 0.15
Matches are distributed among these distances:
136 5 0.00
137 75 0.02
138 9 0.00
139 6 0.00
140 1 0.00
142 3 0.00
143 3 0.00
144 1 0.00
147 1 0.00
148 1 0.00
152 6 0.00
154 2 0.00
155 10 0.00
156 128 0.03
157 958 0.24
158 1506 0.38
159 1003 0.25
160 107 0.03
161 19 0.00
163 1 0.00
165 2 0.00
168 2 0.00
169 20 0.01
170 86 0.02
171 11 0.00
ACGTcount: A:0.31, C:0.18, G:0.14, T:0.37
Consensus pattern (156 bp):
CTCATTAGGATACATGATATTGATGCTTTTGTTTCGCAAGAAAAGCTTTCTTTCCACCAATTTTT
GTAAATCAAAGTTCATCCTCAAATGAGACAAACATGGATTCTAGTAATAATCTCCATTCATTCTG
TGATTAGGCACTATAAACACATTCTC
Found at i:103565 original size:474 final size:474
Alignment explanation
Indices: 102515--111124 Score: 8589
Period size: 474 Copynumber: 18.3 Consensus size: 474
102505 GTTTTCATCA
* * * * * ** **
102515 TTTGGTGTCGCAAAAAAAGCTTTTCTTTCCTCC-TGTGTTGATAGAATCAAAATTTGCCAATTAA
1 TTTGGTGTCACAAGAAAAGCTTTTCTTTCCACCGT-TTTTGATAGAATCAAAGTTTATCTCTTAA
* * ** * *
102579 ATAGGACAAACATTAATAGTCATACTAATCCCCATTCTTTTCGGGATTACGCAACC-TAAACAAA
65 ATAGGACAAA-ATGAATAGTCATACTAATCCCAATTCTTTTCTAGATTAGGC-ACCATAAACATA
* * * * * * *
102643 GTATTCTCATAAAGATACGTAATATTGATGCTTTGCTTTCGCAAGAAAGGCTTTCTTGCCACTAA
128 GTCTTCTCATAAGGATACATGATATTGATGCTTTGGTTTCGCAAGAAAGGCTTTCTTCCCACCAA
* * * *
102708 TTTTGGTAAAGTCTAAGTTTGTGCCTCGAATGAGACAAATATGGATTCTAGTAATGATCTTCATT
193 TTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATT
* * * * * * *
102773 CATTTTATGATTAGGCACTATAAACATAATCTCCTCAATAGGATAAAT-ATTATTGGT-AATTCT
258 CATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGA-TATTGATGATTTTT
* * * *
102836 TTTGCATGGAAATCTTTTCTATGTCC-TGTTTTCCTTAAAATCAAAGTTTATCCCATAAATAAGA
322 TTTGCATGGAAATCTTTCCT-TTTCCTTATTTTCCTTAAAATCAAAGTTCATCCCATAAATAAGA
* * ** * * *
102900 CAAGCATTGATTCTCATAATAGCCTCCATTCCTTTCAAGATTGGGAACCAAAAAGACATTCCATT
386 CAAGCATAGATTCTCATAATAGTCTCCATTATTTTCAAGATTGGGAACCTAAAACACATTCCCTT
*
102965 CATTAGGATACAAGACATTGATGC
451 CATTAGGATACATGACATTGATGC
* * * * * *
102989 TTTAGTGTCGCAAGAAAAACGTTTCTTTCC-CCTATTTTTGATAGAATCAAAATTT-TACTCTTA
1 TTTGGTGTCACAAGAAAAGCTTTTCTTTCCACC-GTTTTTGATAGAATCAAAGTTTAT-CTCTTA
** * * * * **
103052 AATAACACAAAAATGAATAGCCCA-ACAAATCCCCATTCTTTTCAAGATTAGGTGCCATAAACAT
64 AATAGGAC-AAAATGAATAG-TCATACTAATCCCAATTCTTTTCTAGATTAGGCACCATAAACAT
* * * *
103116 AGCCTACTCATAAGGATACATGATATTGATGCTTTTGTTTCGCAAGAAATGCTTTCTTCCCACCA
127 AGTCTTCTCATAAGGATACATGATATTGATGCTTTGGTTTCGCAAGAAAGGCTTTCTTCCCACCA
* * *
103181 ATTTTTGTAAAGTCTAAGTTCATGCCTCAAATGAGACAAACATGGATTCTAGTAATAATCTCCAT
192 ATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCAT
* *
103246 TCATTCTGTGATTAGGCATTATAAACACATTCTCCTCATTAGGATAAATGATATTGATGATTTTT
257 TCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGATATTGATGATTTTT
* * *
103311 TTTGCATGGAAATCTCTCCTTTTCCTTATTTTCCTTAAAATCAAAGTTCATCACATAACTAAGAC
322 TTTGCATGGAAATCTTTCCTTTTCCTTATTTTCCTTAAAATCAAAGTTCATCCCATAAATAAGAC
* * * * *
103376 AAGCATAGATTCTCGTAACAGTCTCCATTATTTTCAGGATTAGGAACCTAAAACACAATCCCTTC
387 AAGCATAGATTCTCATAATAGTCTCCATTATTTTCAAGATTGGGAACCTAAAACACATTCCCTTC
* * *
103441 ATTAAGTTACATGACATTCATGC
452 ATTAGGATACATGACATTGATGC
* * **
103464 TTTGGTGTTACAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTCTGCCTCTTAAA
1 TTTGGTGTCACAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTATCTCTTAAA
* *
103529 TAGGAGC-AAATAAATAGTTATACTAATCCTC-ATTCTTTT-TAGGATTAGGCACCATAAACATA
66 TAGGA-CAAAATGAATAGTCATACTAATCC-CAATTCTTTTCTA-GATTAGGCACCATAAACATA
* * * *
103591 GTCTTCTCATTAGGATACGTAATATTGATGTTTTGGTTTCGCAAGAAAGGCTTTCTTCCCACCAA
128 GTCTTCTCATAAGGATACATGATATTGATGCTTTGGTTTCGCAAGAAAGGCTTTCTTCCCACCAA
* ** * *
103656 GTACTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAATATGGATTTTAGTAATGATCTTCATT
193 TTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATT
*
103721 CATTTTGTGATTAGGCACTATAAACACATTCTCTTCATTAGGATAAATGATATTGATGATTTTTT
258 CATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGATATTGATGA-TTTTT
* *
103786 TTTGCATGGAAATCTTTCCTTTGCCTTATTTTCCTTAAAATCAAAGTTCATCCCATAAACAAGAC
322 TTTGCATGGAAATCTTTCCTTTTCCTTATTTTCCTTAAAATCAAAGTTCATCCCATAAATAAGAC
* * * *
103851 AAGCATCGATTCTCGTAACAATCTCCATTATTTTCAAGATTGGGAACCTAAAACACATTCCCTTC
387 AAGCATAGATTCTCATAATAGTCTCCATTATTTTCAAGATTGGGAACCTAAAACACATTCCCTTC
*
103916 A-TAAGATTACATGACATTGATAG-
452 ATTAGGA-TACATGACATTGAT-GC
* *
103939 TTTGGTGTCACAGGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATC-AAGATTTATCTTTTAA
1 TTTGGTGTCACAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAG-TTTATCTCTTAA
* * **
104003 ATAGCA-AAAACTTGAATACTCATACTAATCCTTATTCTTTTCTAGATTAGGCACCATAAACATA
65 ATAGGACAAAA--TGAATAGTCATACTAATCCCAATTCTTTTCTAGATTAGGCACCATAAACATA
* * * *
104067 GTCTACTCATAAGGATACATGATATTGATGCTTTGGTTTCACAAGAAAGGCTTT-TTCCCTCTAA
128 GTCTTCTCATAAGGATACATGATATTGATGCTTTGGTTTCGCAAGAAAGGCTTTCTTCCCACCAA
* * * * * *
104131 ATTTTGTAAAGTCTATGTTTGTGCCTCAAATGAGACAAACATGGATTCTAGTGATGATTTTCTTT
193 TTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATT
* * * * * * *
104196 AATTTAGTGATTTGGCACTACAAACACATTCTCGTTATTAGGATAAATGATATTGATCATTTTCT
258 CATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGATATTGATGATTTT-T
* * * **
104261 TTT-AAGTGAAAATCTTT--TTTTGCCCTATTTTTCC-TAAAATCAAAGTTCATCCCATATGTAA
322 TTTGCA-TGGAAATCTTTCCTTTT-CCTTA-TTTTCCTTAAAATCAAAGTTCATCCCATAAATAA
* * * *
104322 GACAAGTA-ATGATACTCGTAATAGTCTCCATTATTTTCAGGATTGGGAACCTAAAACACATTCC
384 GACAAGCATA-GATTCTCATAATAGTCTCCATTATTTTCAAGATTGGGAACCTAAAACACATTCC
*
104386 CTTCATTAGGATACATGACAATGATGC
448 CTTCATTAGGATACATGACATTGATGC
* ** * *
104413 TTTGATG-CTGTAAGAAAAGCTTTTCTTTCTACCGTTTTTGATGGAATCAAAGTTTATCTCTTAA
1 TTTGGTGTC-ACAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTATCTCTTAA
* * * * * **
104477 ATAAGACAAACATTAACAGTCATACTAATCCCAATTCTTTTCTGGAGTAGGCATAATAAACATAG
65 ATAGGACAAA-ATGAATAGTCATACTAATCCCAATTCTTTTCTAGATTAGGCACCATAAACATAG
* * * * *
104542 TCTTCTTAAAAGGATGCACGATATTGATGCTTTGGTATT-GCACGAAAGGCTTTCTTCCCA-CAA
129 TCTTCTCATAAGGATACATGATATTGATGCTTTGGT-TTCGCAAGAAAGGCTTTCTTCCCACCAA
* * * * * * *
104605 ATCTTGTAAATTCTAAGTTCATGCCTTAAATGAGACAAAAATGGATTCTAGTAAAGATCTTCATT
193 TTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATT
** * * **
104670 CATTTTGTCCTTAGGCACTATAAACACATTCTCCTCATTATGATAAATGGTATTGAAAATTTTCT
258 CATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGATATTGATGATTTT-T
* * * **
104735 TTTGCCTGGAAATCTTT--TTTTGCCCTATTTTCCTTAAAATTAAAGTTCATCCCATAAGCAAGA
322 TTTGCATGGAAATCTTTCCTTTT-CCTTATTTTCCTTAAAATCAAAGTTCATCCCATAAATAAGA
* * * **
104798 CAAGTA-ACGATACTCGTAATAGTCTCCATTATTTTCAAGATTGGGAATGTAAAACACATTCCCT
386 CAAGCATA-GATTCTCATAATAGTCTCCATTATTTTCAAGATTGGGAACCTAAAACACATTCCCT
*
104862 TTATTAGGATACATGACATTGATGC
450 TCATTAGGATACATGACATTGATGC
* *
104887 TTTGGTGTCACAAGAAAAGCTTTTCTTTCCACCATTTTTGATAGAATCAAAATTTATCTCTTAAA
1 TTTGGTGTCACAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTATCTCTTAAA
* * *
104952 TAGGA-AAACTTGAATACTCATACTAATCCCTATTCTTTTCTAGATTAGGCACCATAAACATAGT
66 TAGGACAAA-ATGAATAGTCATACTAATCCCAATTCTTTTCTAGATTAGGCACCATAAACATAGT
* * * ** *
105016 CTTCTCATAAGGATACACGATATTGATGCTTTGGTTTCGCAAGAAAAGCTTTTTTCCGTCCAACT
130 CTTCTCATAAGGATACATGATATTGATGCTTTGGTTTCGCAAGAAAGGCTTTCTTCCCACCAATT
* * * * *
105081 TTTGTAAAGTCTAAGTTCGTGCCTCACATGAGACAAACATGGATTCTAATAATGATTTTCTTTAA
195 TTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCA
105146 TTTTGTGATGT-GGCACTAT-AACACATTCTCCTCATTAGGATAAATGATATTGATGATTTTTTA
260 TTTTGTGAT-TAGGCACTATAAACACATTCTCCTCATTAGGATAAATGATATTGATGATTTTTT-
* * * * *
105209 TTGCATGGAAATCTTTCCTTTTCTTTATTTTCCCTAAAATCAAAGTTAATTCCGTAAATAAGACA
323 TTGCATGGAAATCTTTCCTTTTCCTTATTTTCCTTAAAATCAAAGTTCATCCCATAAATAAGACA
* * * *
105274 AGTATCGATTCTCATTATAGTCTCTATTATTTTCAAGATTGGGAACCTAAAACACATTCCCTTCA
388 AGCATAGATTCTCATAATAGTCTCCATTATTTTCAAGATTGGGAACCTAAAACACATTCCCTTCA
** * *
105339 TTAGCTTACTTGACATTGATAC
453 TTAGGATACATGACATTGATGC
* *
105361 TTTGGTGTCATAATAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAA-TTTATCTCTTAAA
1 TTTGGTGTCACAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTATCTCTTAAA
* * * ** * **
105425 TAGGACAAACTTAAATACTCATAAAAATCCCTATTCTTTTCTAGATTAGGCAATATAAACATAGT
66 TAGGACAAA-ATGAATAGTCATACTAATCCCAATTCTTTTCTAGATTAGGCACCATAAACATAGT
* * * * * * *
105490 CTGCTCATAAGAATACATGATATTGAAGCTTTGGTTTTGCAAGAAAGGCTTTTTTCCCTCCAACT
130 CTTCTCATAAGGATACATGATATTGATGCTTTGGTTTCGCAAGAAAGGCTTTCTTCCCACCAATT
* * * *
105555 TTTGTAAAGTCTAAGTTCGTGCCTCAAATGCA-AC-AACAAGGATTCTAGTAATGATTTTCTTTA
195 TTTGTAAAGTCTAAGTTCGTGCCTCAAATG-AGACAAACATGGATTCTAGTAATGATCTTCATTC
* *
105618 ATTTTCTGATTTGGCACTATAAACACATTCTCCTCATTAGGATAAATGATATTGATGATTTTTTT
259 ATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGATATTGATGATTTTTTT
* * * *
105683 TGCATGGAAATCTTTCCTTTTCCTTATTTTCCTTAAAATCAATGTTTATCCCATAAAGAAGAAAA
324 TGCATGGAAATCTTTCCTTTTCCTTATTTTCCTTAAAATCAAAGTTCATCCCATAAATAAGACAA
* * * * **
105748 GCACT-GATTCTCATAACAGTCTCCATTATTTTCTAGATCGGGAACCTAAAACGCATTTTCTTCA
389 GCA-TAGATTCTCATAATAGTCTCCATTATTTTCAAGATTGGGAACCTAAAACACATTCCCTTCA
105812 TTAGGATACATGACATTGATGC
453 TTAGGATACATGACATTGATGC
* * * * * *
105834 TTTGGTGTCATAAAAAAAGCTTTTCTTTCTACCATTTTTGA-GGAAATCAAAGTTTGTCTCTTAA
1 TTTGGTGTCACAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAG-AATCAAAGTTTATCTCTTAA
* ** *
105898 ATAAGACAAACATGAATAGTCATACTAATCCCAATTCTTTTCT-GAAGCAGGCACTATAAACATA
65 ATAGGACAAA-ATGAATAGTCATACTAATCCCAATTCTTTTCTAG-ATTAGGCACCATAAACATA
* * * * * *
105962 GTCTTCTCAAAAGGATGCACGATATCGATGCTTTGGTTTTGCAAGAAAGGCTTTCTTCCCACAAA
128 GTCTTCTCATAAGGATACATGATATTGATGCTTTGGTTTCGCAAGAAAGGCTTTCTTCCCACCAA
* * * * * * * * *
106027 TTTTGGAAAAGTCTAAGTTCATGCCTTAAATAAGGCAAAAATGGATTCTAGTAAAGATCTTGATT
193 TTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATT
* * **
106092 CATTTTGTCATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGGTATTGAAAATTTTCT
258 CATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGATATTGATGATTTT-T
* * * * * * * * *
106157 TTTGCTTGAAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTTAACTC-TGAAATGAGA
322 TTTGCATGGAAATCTTTCCTTTTCCTTATTTTCCTTAAAATCAAAGTTCATCCCAT-AAATAAGA
* * * * * *
106221 CAAGCATCA-ATTCTCATAATAGTCTCCATTCTTTTCAGGATTGTGACCCAAAAATACATTCCCT
386 CAAGCAT-AGATTCTCATAATAGTCTCCATTATTTTCAAGATTGGGAACCTAAAACACATTCCCT
106285 TCATTAGGATACATGACATTGATGC
450 TCATTAGGATACATGACATTGATGC
* * * *** *
106310 TTTGGTGTCGCAAG-AAAGTTTTTCTTT--GCC-TTATTT--T----TC--A--TTA--GGATAC
1 TTTGGTGTCACAAGAAAAGCTTTTCTTTCCACCGTT-TTTGATAGAATCAAAGTTTATCTCTTAA
* * * ** *
106359 A-A-G-C---ATTAATTGTCTTGTTAATCCTC-ATTCTTTTC-AGGATTAGGCACCCTAAACATA
65 ATAGGACAAAATGAATAGTCATACTAATCC-CAATTCTTTTCTA-GATTAGGCACCATAAACATA
* * * * * *
106416 GTCTTCTCGTTAGGATACGTGATATTGAAGTTTTGGTTTCGCAAGAAAGGCTTTCTTCCTACCAA
128 GTCTTCTCATAAGGATACATGATATTGATGCTTTGGTTTCGCAAGAAAGGCTTTCTTCCCACCAA
** * ** * *
106481 TTTTTGTTGAGTCTAAGTTCGTACCTCAAATGAGACGGATATGGATTCTAGTAATGATCTTTATT
193 TTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATT
*
106546 CATTTTGTGATTAGGCACTATAAACACATTCTCCTCTTTAGGATAAATGATATTGATGATTTTTT
258 CATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGATATTGATGATTTTTT
* *
106611 TTG-AGTGGAAATCTTT-CTCTTGCCTTATTTTCCTTAAAATCAAAGTTCATCCCATAAACAAGA
323 TTGCA-TGGAAATCTTTCCT-TTTCCTTATTTTCCTTAAAATCAAAGTTCATCCCATAAATAAGA
* * * * * *
106674 CAGGCATCGATTCTCATAATAGTCTCCATTATTTTCAAGATTTGGAAGCTAAAATACTTTCCCTT
386 CAAGCATAGATTCTCATAATAGTCTCCATTATTTTCAAGATTGGGAACCTAAAACACATTCCCTT
* * *
106739 CATTAGGTTACACGACATTGATAC
451 CATTAGGATACATGACATTGATGC
* *
106763 TTTGGTGTCACAAGAAAAGCTTTTCTTTCCACCATTTTTGATAGAATCAAAATTTATCTCTTAAA
1 TTTGGTGTCACAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTATCTCTTAAA
* * * *
106828 TAAGACAAACTTGAATACTCATACTAATCCCTATTCTTTTCTAGATTAGGCACCATAAACATAGT
66 TAGGACAAA-ATGAATAGTCATACTAATCCCAATTCTTTTCTAGATTAGGCACCATAAACATAGT
* * * * * * *
106893 CTTCTTAT-AGTGATACACGATATTCACGCTTTGGTTTCGCAAAAAAGGCTTT-TTCCCACCGAG
130 CTTCTCATAAG-GATACATGATATTGATGCTTTGGTTTCGCAAGAAAGGCTTTCTTCCCACCAAT
* * * * * *
106956 TTTTGTAAAGTCTATGTCCATGCCTCAAGTAAGACAAACATGGATTCTAGTAATGATGTTCATTC
194 TTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTC
* * * * *
107021 ATTTTGTGATTAGGCAATATAAATACATTCTCCTCACTAGGGTAAAAGATATTGATGATTTTCTT
259 ATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGATATTGATGATTTT-TT
* * * * * * * * * *
107086 TTGCATGGAAAACTTTTCTTTCCCCTATTTTTCGTAAAATCAAAGTTTATCTCTTAAAAAAGACA
323 TTGCATGGAAATCTTTCCTTTTCCTTATTTTCCTTAAAATCAAAGTTCATCCCATAAATAAGACA
* * * * * *
107151 ACCATCGATTCTCATAACT-GTCTCCATTCTTTTCATGATTGGGAACCAAAAACA-ATTCCTTTC
388 AGCATAGATTCTCATAA-TAGTCTCCATTATTTTCAAGATTGGGAACCTAAAACACATTCCCTTC
107214 ATTAGGATACATGACATTGATGC
452 ATTAGGATACATGACATTGATGC
** * * * ** *
107237 TTTGGTGTTGCAAGAAAAGCTTTTCTTTCCTCCGTTTTTGATAAAATCAAAATTTGCCTATTAAA
1 TTTGGTGTCACAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTATCTCTTAAA
* * * *
107302 TAGGACAAAAATTAATAGTCATACTAATCCCTATT-TTTT-TGGGATTACGCAACC-TAAACATA
66 TAGGAC-AAAATGAATAGTCATACTAATCCCAATTCTTTTCT-AGATTAGGC-ACCATAAACATA
* * * * * * *
107364 GTATTCTCATAAGGATACATGATATTGATACTTTGCTTTCACAAGAAAGGCTTTCTTGCCGCTAA
128 GTCTTCTCATAAGGATACATGATATTGATGCTTTGGTTTCGCAAGAAAGGCTTTCTTCCCACCAA
* * *
107429 TTTTGGTAAAGTCTAAGTTTGTGCCTCAAATGAGACAAATATGGATTCTAGTAATGATCTTCATT
193 TTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATT
* * * *
107494 CTTTTTATGATTAGGCACTATAAACACAATCTCCTCCA-TAGGATAAAT-ATTATTGATAATTTA
258 CATTTTGTGATTAGGCACTATAAACACATTCTCCT-CATTAGGATAAATGA-TATTGATGATTT-
* * * *
107557 CTTTTGCATGGAAATCTTTTCTTTGTCC-TATTTTCCTTCAAATCAAAGTTCATCCTATAAATAA
320 TTTTTGCATGGAAATCTTTCCTTT-TCCTTATTTTCCTTAAAATCAAAGTTCATCCCATAAATAA
* * ** * * *
107621 GACAAGTATCGATTCTCATAATAGTCTCCATTCCTTTCAAGATTGGGAACCAAAAAGACATTCCA
384 GACAAGCATAGATTCTCATAATAGTCTCCATTATTTTCAAGATTGGGAACCTAAAACACATTCCC
*
107686 TTCATTAGGATACAAGACATTGATGC
449 TTCATTAGGATACATGACATTGATGC
* * * * * *
107712 TTTGGTGTCGCAA-CAAAGCTTTTGTTTCC-CC-TGGTTTGGTAGAATCAAAGTTT-TGCTCTTG
1 TTTGGTGTCACAAGAAAAGCTTTTCTTTCCACCGT-TTTTGATAGAATCAAAGTTTAT-CTCTTA
** * * * * * **
107773 AATAACACAAAAAAGAATTGTCCA-ACTAATCCCCATTCTTTTCAAGATTTGGTGCCATAAACAT
64 AATAGGAC-AAAATGAATAGT-CATACTAATCCCAATTCTTTTCTAGATTAGGCACCATAAACAT
* * * * ****
107837 AGCCTACTCATAAGGATACGTGATATTGATGCTTTGGTTTCGCAAGAAAGACTTTCTTCCCGGTG
127 AGTCTTCTCATAAGGATACATGATATTGATGCTTTGGTTTCGCAAGAAAGGCTTTCTTCCCACCA
* * * * * * * *
107902 ACTTTTGTAAATTCTAAGTTCATGCCCCAAATAAGACAAACATGGATCCTAGTAATGATTTTCTT
192 ATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCAT
* * *
107967 TAATTTTGTGATTTGGCACTATAAACACATTCTCCTCATT-GCGATAAATGATATTGCTGA-TTT
257 TCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAG-GATAAATGATATTGATGATTTT
* * * * * * *
108030 TTTTGCTTGGAAATCTTTACTTTGCCATATTTTCCTTAAAATCAAAGTTCATCCCTTAAGTATGA
321 TTTTGCATGGAAATCTTTCCTTTTCCTTATTTTCCTTAAAATCAAAGTTCATCCCATAAATAAGA
* * * * * * * * *
108095 TAAGCATTGATCCTCGTAACAGTCTCCATTTTTTTTAGGATTGGGAACCTAAAACACATTTCCTT
386 CAAGCATAGATTCTCATAATAGTCTCCATTATTTTCAAGATTGGGAACCTAAAACACATTCCCTT
*
108160 CATTAGGATACAAGACATTGATGC
451 CATTAGGATACATGACATTGATGC
* * *
108184 TTTGGTGTCATAAGAAAAGCTTTTCGTTCCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAA
1 TTTGGTGTCACAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTATCTCTTAAA
* * * ** *
108249 TAAGACAAATATGAATAGTCATACCAATCCCAATTC-TTT-TAGGAATAGGTGCTATAAACATAG
66 TAGGACAAA-ATGAATAGTCATACTAATCCCAATTCTTTTCTA-GATTAGGCACCATAAACATAG
* * * * * * * * *
108312 TCTTCTCAAAAGGATGCACGATATTAATGCTTTGTTTTTGTAAGAAAGGCTTTGTTGCCACCAAT
129 TCTTCTCATAAGGATACATGATATTGATGCTTTGGTTTCGCAAGAAAGGCTTTCTTCCCACCAAT
* * *
108377 TTTTGTAAATTCTAAGTTCGTGCCTTAAATGAGACAAAAATGGATTCTAGTAAAT-ATCTTCATT
194 TTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGT-AATGATCTTCATT
* **
108441 CATTTTGTGA-TAGGCACTATAAATACATTCTCCTCATTAGGATAAATGATA-TGAAAAATTTTC
258 CATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGATATTG-ATGATTTT-
* * * * * * * * * * * * * *
108504 TTTCGAATGGAAACCTTTTCTCTGCCCTATTTTCCTTAAAATCAAACTTTAACTCTTAAATTAGG
321 TTTTGCATGGAAATCTTTCCTTTTCCTTATTTTCCTTAAAATCAAAGTTCATCCCATAAATAAGA
* * * * * * *
108569 CAAGCATCGATTCT-AGTAACAATCTCCATTCTTTTCATGATTGTGAACCAAAAACACATTCCCT
386 CAAGCATAGATTCTCA-TAATAGTCTCCATTATTTTCAAGATTGGGAACCTAAAACACATTCCCT
108633 TCATTAGGATACATGACATTGATGC
450 TCATTAGGATACATGACATTGATGC
** * * **
108658 TTTGGTGTCGTAAG-AACGTTTTTCTTTCCATCC-TTTTTGATAGAATCAAAGTTCGTCTCTTAA
1 TTTGGTGTCACAAGAAAAGCTTTTCTTTCCA-CCGTTTTTGATAGAATCAAAGTTTATCTCTTAA
* * * *
108721 ATAAGACAAACATGAGACAAACATGGTCTTCTCATACTAATCCTC-ATTCTTTTTTGGATTAGGC
65 ATAGGACAAA-AT--G----A-ATAG-----TCATACTAATCC-CAATTCTTTTCTAGATTAGGC
* * * *
108785 ACCGTAAACATAGTCTTCTTATAGGGATACATGATATTGATGCTTTGGTTTCGCAAGAAAGGGTT
116 ACCATAAACATAGTCTTCTCATAAGGATACATGATATTGATGCTTTGGTTTCGCAAGAAAGGCTT
* * ** * *
108850 TCTTCCCACTAATTTATGTAAAGTCTAAGTTCACGCATCTAATGAGACAAACATGGATTCTAGTA
181 TCTTCCCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTA
* ** ** *
108915 ATGA---TCA---A-----AG-TT---C-CCCT--ACTTTATT-T--TCCTT---A-AAATGATA
246 ATGATCTTCATTCATTTTGTGATTAGGCACTATAAAC-ACATTCTCCTCATTAGGATAAATGATA
* * * * * *
108955 TTGATGATTTTTTTTGCCTGGAAATCTTTCCTCTGCTTTATTTTCCTTAAAATGAAAGTTCATCA
310 TTGATGATTTTTTTTGCATGGAAATCTTTCCTTTTCCTTATTTTCCTTAAAATCAAAGTTCATCC
* * * *
109020 CATAAATAAGACAAGC----A---TC--AAT--TC-CC-GTA-ATCCAGGATTGGGAACCTAAAA
375 CATAAATAAGACAAGCATAGATTCTCATAATAGTCTCCATTATTTTCAAGATTGGGAACCTAAAA
* *
109071 CACATTCCCTTCA-TAGGTTACATGACACTGATGC
440 CACATTCCCTTCATTAGGATACATGACATTGATGC
* * * * **
109105 TTTGGTGTCACAAGAAAAGCTTTTCTTTCCACCATTTTGGATAAAATCAAAGTCTGCCTCTTAAA
1 TTTGGTGTCACAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTATCTCTTAAA
* * * * *
109170 TTGGACAAACCTGAATAGTCATACTAATCCCCATTCTTTTC-AGGATTAGGTACCCTAAACATAG
66 TAGGACAAA-ATGAATAGTCATACTAATCCCAATTCTTTTCTA-GATTAGGCACCATAAACATAG
* *** * *
109234 TCTTCTCATTAGGATATGCGATATTGATGTTTTGGTTTCACAAGAAAGGCTTTCTTCCCACCAAT
129 TCTTCTCATAAGGATACATGATATTGATGCTTTGGTTTCGCAAGAAAGGCTTTCTTCCCACCAAT
* * * *
109299 TTATGTGAAGTCTAAGTTCTTGCCTCAAATGAGACAAATAT-GATTCTAGTAATGATCTTCATTC
194 TTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTC
* *
109363 ATTTTGTGATTAGGCACTATAAACACATTCTCCGCATTAGGATAAAAGATATTGATGATTTTTTT
259 ATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGATATTGATGATTTTTTT
* * * * * * * *
109428 TGCATGAAAAAT-TTTTCTTTCCCCTATTTTCCTTAAAATC-AAGTTTATCTCTTAAATAAGGCA
324 TGCATG-GAAATCTTTCCTTTTCCTTATTTTCCTTAAAATCAAAGTTCATCCCATAAATAAGACA
* * * *
109491 ATCATCGATTCTCATAACAGTCTCCATTATTTTCACGATTGGGAACC-AGAAACACATTCCAC-T
388 AGCATAGATTCTCATAATAGTCTCCATTATTTTCAAGATTGGGAACCTA-AAACACATTCC-CTT
* * *
109554 CATTAGGATAGATCATATTGATGC
451 CATTAGGATACATGACATTGATGC
** * ** *
109578 TTTGGTGTCGTAATAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGCCTATTAAA
1 TTTGGTGTCACAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTATCTCTTAAA
* ** ** * *
109643 TAGGACAAACATCAATTTTCATACTAATCCCCCTTCTTTT-TGGGATTAGGCACCCTAAACATAG
66 TAGGACAAA-ATGAATAGTCATACTAATCCCAATTCTTTTCT-AGATTAGGCACCATAAACATAG
* * * * * *
109707 TATTCTCATAAAGATACACGATATTGATGCTTTGGTTTCACAAGAAAGGCTTTCTTGCCATCAAT
129 TCTTCTCATAAGGATACATGATATTGATGCTTTGGTTTCGCAAGAAAGGCTTTCTTCCCACCAAT
* * *
109772 TTTTGTAAAGTCTAAGTTTGTGCCTTAAATGAGACAAATATGGATTCTAGTAATGATCTTCATTC
194 TTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTC
* * *
109837 ATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGTTATTGCTGA-TTTTCT
259 ATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGATATTGATGATTTTTTT
* * ** * * *
109901 T---T-G---T-TTTCC----CC-TATTTTGCTTAAAATCAAAGTTTATTTCTTAAATCAGCCAA
324 TGCATGGAAATCTTTCCTTTTCCTTATTTTCCTTAAAATCAAAGTTCATCCCATAAATAAGACAA
* * * * * *
109953 GCATTGATTCTTTC-TAATAGTCTCTATTTTGTTTCAAGATTGGGATCCAAAAATACATTCCCTT
389 GCATAGATTC--TCATAATAGTCTCCATTAT-TTTCAAGATTGGGAACCTAAAACACATTCCCTT
110017 CATTAGGATACATGACATTGATGC
451 CATTAGGATACATGACATTGATGC
* * * * *
110041 TTTAGTATCGCAAGAAAAGCTTTTCTTTCCACCATTTTTGATAGAATCAAAGTTTGTCTCTTAAA
1 TTTGGTGTCACAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTATCTCTTAAA
* * * * * *
110106 TAAGACAAACATAAATACTCATACTAATCCTC-CTTCTTTT-TAGGATTATGCACCATAAACAAA
66 TAGGACAAA-ATGAATAGTCATACTAATCC-CAATTCTTTTCTA-GATTAGGCACCATAAACATA
* * * * * ** * *
110169 GTCTTCTCATATGGATAAATGTTATTGGTGCTTTGGTTTCAG-AAGAGACACTTTTTTCCCAACA
128 GTCTTCTCATAAGGATACATGATATTGATGCTTTGGTTTC-GCAAGAAAGGCTTTCTTCCCACCA
* * * * *
110233 A-TTTTGTAAAGTTTAAGTTTGTGCCTCAAATGATACAAACATGGATTCTAGTACTGATCTTCTT
192 ATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCAT
* * * * * *
110297 TCCTTTTATTG-TTAGGCATTATAAACGCATTCTCCTCATTAAGATAAATGATATTGATCATTTT
257 TCATTTT-GTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGATATTGATGATTTT
* * * * * * * ** *
110361 CTTTTGCATGGAAATATTTTCTTTGCCCT-TTTTCCTTATAATCAAAATTTATCCTTTAAACAAG
321 -TTTTGCATGGAAATCTTTCCTTTTCCTTATTTTCCTTAAAATCAAAGTTCATCCCATAAATAAG
* * * ** *
110425 ACAAGCATCGATTCTTC-TAACAGTCTCCATTGTTTTTGAGATTGGGAACCTAAAACACATTACC
385 ACAAGCATAGATTC-TCATAATAGTCTCCATTATTTTCAAGATTGGGAACCTAAAACACATTCCC
*
110489 TTCATTTA-TATACATGACATTGATGC
449 TTCA-TTAGGATACATGACATTGATGC
* * * * ** **
110515 TTTGGTGTCGCAAGAAACGCTTTTCTTTGCC-CCATTTTTTATAGAATCAAAGTTTGGCTCTTTG
1 TTTGGTGTCACAAGAAAAGCTTTTCTTT-CCACCGTTTTTGATAGAATCAAAGTTTATCTCTTAA
** * * * *
110579 ATAACACAAAAATGAATTA-TCAAACTAATCCCCATTCTTTT-TAGGATTAGGTACCGTAAACAT
65 ATAGGAC-AAAATGAA-TAGTCATACTAATCCCAATTCTTTTCTA-GATTAGGCACCATAAACAT
* * * * *
110642 AGTCTTCTTATAAGGATACACGATATTGATGCTTTGGTTTCGCAACAAAGGTTTTCTTCCCAACA
127 AGTCTTCTCATAAGGATACATGATATTGATGCTTTGGTTTCGCAAGAAAGGCTTTCTTCCCACCA
* * * *
110707 ATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATAAGACAGACATGGATTCTAGTACTGATCTTCTT
192 ATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCAT
* * * * * * * *
110772 TCCTTTTATTG-TTAGGCACTATAAAAATATTTTCCTTAATAGCATAAATG---TTGATGATTTT
257 TCATTTT-GTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGATATTGATGATTTT
* * *
110833 CCTTTGCATGGAGATCTTT-TTTTGGTCC-TATTTTCCTTAAAATCAAAGTTCATCCCATAAATA
321 -TTTTGCATGGAAATCTTTCCTTT--TCCTTATTTTCCTTAAAATCAAAGTTCATCCCATAAATA
* * * * ** *
110896 AGACAAGTATTGATTCTCATAATAGTTTACATTCCTTTCAAGATTGGGAACC-AAGAAGACATTC
383 AGACAAGCATAGATTCTCATAATAGTCTCCATTATTTTCAAGATTGGGAACCTAA-AACACATTC
* *
110960 CTTTCATTAGGATACATGATATTGATGC
447 CCTTCATTAGGATACATGACATTGATGC
** * * * *
110988 TTTGGTGTCGTAAGAAAAGCCTTTCTTTCAACTGTTTTTTGATAGAATCAAAGTTTGTCTCTTAA
1 TTTGGTGTCACAAGAAAAGCTTTTCTTTCCACCG-TTTTTGATAGAATCAAAGTTTATCTCTTAA
* * * *
111053 ATAAGACAAAAATTATAAATAGTTATACTAATCCCCATTCTTTTC-AGGATTAGGCACCATAAAC
65 ATAGGAC--AAA--ATGAATAGTCATACTAATCCCAATTCTTTTCTA-GATTAGGCACCATAAAC
111117 ATAGTCTT
125 ATAGTCTT
111125 TTGCACATTT
Statistics
Matches: 6799, Mismatches: 1087, Indels: 497
0.81 0.13 0.06
Matches are distributed among these distances:
435 15 0.00
436 129 0.02
438 3 0.00
441 4 0.00
442 1 0.00
446 2 0.00
447 35 0.01
448 79 0.01
449 1 0.00
450 3 0.00
451 4 0.00
452 5 0.00
453 144 0.02
454 214 0.03
455 6 0.00
456 5 0.00
457 2 0.00
458 25 0.00
459 49 0.01
460 20 0.00
461 34 0.01
462 178 0.03
463 230 0.03
464 9 0.00
465 8 0.00
466 3 0.00
467 9 0.00
468 4 0.00
469 5 0.00
470 7 0.00
471 14 0.00
472 257 0.04
473 1087 0.16
474 2725 0.40
475 1006 0.15
476 282 0.04
477 52 0.01
479 1 0.00
480 4 0.00
483 3 0.00
485 18 0.00
486 116 0.02
487 1 0.00
ACGTcount: A:0.31, C:0.18, G:0.14, T:0.37
Consensus pattern (474 bp):
TTTGGTGTCACAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTATCTCTTAAA
TAGGACAAAATGAATAGTCATACTAATCCCAATTCTTTTCTAGATTAGGCACCATAAACATAGTC
TTCTCATAAGGATACATGATATTGATGCTTTGGTTTCGCAAGAAAGGCTTTCTTCCCACCAATTT
TTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCAT
TTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGATATTGATGATTTTTTTTG
CATGGAAATCTTTCCTTTTCCTTATTTTCCTTAAAATCAAAGTTCATCCCATAAATAAGACAAGC
ATAGATTCTCATAATAGTCTCCATTATTTTCAAGATTGGGAACCTAAAACACATTCCCTTCATTA
GGATACATGACATTGATGC
Found at i:109873 original size:158 final size:157
Alignment explanation
Indices: 109213--109882 Score: 467
Period size: 157 Copynumber: 4.2 Consensus size: 157
109203 TTCTTTTCAG
* * * * * ** *
109213 GATTAGGTACCCTAAACATAGTCTTCTCATTAGGATATGCGATATTGATGTTTTGGTTTCACAAG
1 GATTAGGCACCATAAACACATTCTCCTCATTAGGATAAACGATATTGATGCTTTGGTTTCACAAG
* * * *
109278 AAAGGCTTTCTTCCCACCAATTTATGTGAAGTCTAAGTTCTTGCCTCAAATGAGACAAATAT-GA
66 AAAGGCTTTCTTTCCACCAATTTTTGTAAAGTCTAAGTT-TTGCCTTAAATGAGACAAATATCGA
*
109342 TTCT-AGTAATGATCTTCATTCATTTTGT
130 TTCTCA-TAATGATCTCCATTCATTTTGT
* * * * ** *
109370 GATTAGGCACTATAAACACATTCTCCGCATTAGGATAAAAGATATTGATGATTTTTTTTGCATGA
1 GATTAGGCACCATAAACACATTCTCCTCATTAGGATAAACGATATTGATGCTTTGGTTT-CA-CA
** * * * *
109435 A-AAA-TTTTTCTTTCC-CCTATTTTCCT-TAAAATC-AAGTTTAT-CTCTTAAATAAGGC-AAT
64 AGAAAGGCTTTCTTTCCACCAATTTT--TGTAAAGTCTAAGTTT-TGC-CTTAAATGAGACAAAT
* **
109493 CATCGATTCTCATAA-CAGTCTCCATT-ATTTTCAC
125 -ATCGATTCTCATAATGA-TCTCCATTCATTTT-GT
* * * * * **
109527 GATTGGGAACCAGAAACACATTC-CACTCATTAGGATAGATC-ATATTGATGCTTTGGTGTCGTA
1 GATTAGGCACCATAAACACATTCTC-CTCATTAGGATA-AACGATATTGATGCTTTGGTTTCACA
* * * *
109590 ATAAAAGCTTTTCTTTCCACC-GTTTTTGATAGAA-TCAAAG-TTTGCCTATTAAAT-AGGACAA
64 AGAAAGGC-TTTCTTTCCACCAATTTTTG-TA-AAGTCTAAGTTTTGCC--TTAAATGA-GACAA
* * * * * * * * *
109651 ACATCAATTTTCATACTAATCCCCCTTCTTTTTGG
123 ATATCGATTCTCATAATGATCTCCATTCATTTTGT
* * * * * * * *
109686 GATTAGGCACCCTAAACATAGTATTCTCATAAAGATACACGATATTGATGCTTTGGTTTCACAAG
1 GATTAGGCACCATAAACACATTCTCCTCATTAGGATAAACGATATTGATGCTTTGGTTTCACAAG
* * *
109751 AAAGGCTTTCTTGCCATCAATTTTTGTAAAGTCTAAGTTTGTGCCTTAAATGAGACAAATATGGA
66 AAAGGCTTTCTTTCCACCAATTTTTGTAAAGTCTAAGTTT-TGCCTTAAATGAGACAAATATCGA
*
109816 TTCT-AGTAATGATCTTCATTCATTTTGT
130 TTCTCA-TAATGATCTCCATTCATTTTGT
*
109844 GATTAGGCACTATAAACACATTCTCCTCATTAGGATAAA
1 GATTAGGCACCATAAACACATTCTCCTCATTAGGATAAA
109883 TGTTATTGCT
Statistics
Matches: 381, Mismatches: 96, Indels: 71
0.70 0.18 0.13
Matches are distributed among these distances:
155 7 0.02
156 35 0.09
157 124 0.33
158 110 0.29
159 94 0.25
160 11 0.03
ACGTcount: A:0.31, C:0.18, G:0.14, T:0.37
Consensus pattern (157 bp):
GATTAGGCACCATAAACACATTCTCCTCATTAGGATAAACGATATTGATGCTTTGGTTTCACAAG
AAAGGCTTTCTTTCCACCAATTTTTGTAAAGTCTAAGTTTTGCCTTAAATGAGACAAATATCGAT
TCTCATAATGATCTCCATTCATTTTGT
Found at i:109890 original size:158 final size:157
Alignment explanation
Indices: 109068--109890 Score: 463
Period size: 158 Copynumber: 5.2 Consensus size: 157
109058 TGGGAACCTA
* * * * * *
109068 AAACACATTC-CCTTCA-TAGGTTACATGACACTGATGCTTTGGTGTCACAAGAAAAGCTTTTCT
1 AAACACATTCTCC-TCATTAGGATAAATGATATTGATGCTTTGGTTTCACAAGAAAGGC-TTTCT
* * * * ** **
109131 TTCCACC-ATTTTGGATAAAATCAAAG-TCTGCCTCTTAAATTG-GACAAACCT-GAATAGTCAT
64 TTCCACCAATTTTTG-TAAAGTCTAAGTTTTG-C-CTTAAA-TGAGACAAATATCG-ATTCTCAT
* * * * *
109192 ACTAATCCCCATTC-TTTTCAG-GATTAGGTACCCT
124 AATGATCTCCATTCATTTT--GTGATTAGGCACCAT
* * * *** * *
109226 AAACATAGTCTTCTCATTAGGATATGCGATATTGATGTTTTGGTTTCACAAGAAAGGCTTTCTTC
1 AAACACATTCTCCTCATTAGGATAAATGATATTGATGCTTTGGTTTCACAAGAAAGGCTTTCTTT
* * *
109291 CCACCAATTTATGTGAAGTCTAAGTTCTTGCCTCAAATGAGACAAATAT-GATTCT-AGTAATGA
66 CCACCAATTTTTGTAAAGTCTAAGTT-TTGCCTTAAATGAGACAAATATCGATTCTCA-TAATGA
* *
109354 TCTTCATTCATTTTGTGATTAGGCACTAT
129 TCTCCATTCATTTTGTGATTAGGCACCAT
* * * ** * **
109383 AAACACATTCTCCGCATTAGGATAAAAGATATTGATGATTTTTTTTGCATGAA-AAA-TTTTTCT
1 AAACACATTCTCCTCATTAGGATAAATGATATTGATGCTTTGGTTT-CA-CAAGAAAGGCTTTCT
* * * *
109446 TTCC-CCTATTTTCCT-TAAAATC-AAGTTTAT-CTCTTAAATAAGGC-AATCATCGATTCTCAT
64 TTCCACCAATTTT--TGTAAAGTCTAAGTTT-TGC-CTTAAATGAGACAAAT-ATCGATTCTCAT
* ** * * *
109506 AA-CAGTCTCCATT-ATTTTCACGATTGGGAACCAG
124 AATGA-TCTCCATTCATTTT-GTGATTAGGCACCAT
* * * ** * *
109540 AAACACATTC-CACTCATTAGGATAGATCATATTGATGCTTTGGTGTCGTAATAAAAGCTTTTCT
1 AAACACATTCTC-CTCATTAGGATAAATGATATTGATGCTTTGGTTTCACAAGAAAGGC-TTTCT
* * * * *
109604 TTCCACC-GTTTTTGATAGAA-TCAAAG-TTTGCCTATTAAAT-AGGACAAACATCAATTTTCAT
64 TTCCACCAATTTTTG-TA-AAGTCTAAGTTTTGCC--TTAAATGA-GACAAATATCGATTCTCAT
* * * * * * *
109665 ACTAATCCCCCTTCTTTTTGGGATTAGGCACCCT
124 AATGATCTCCATTCATTTTGTGATTAGGCACCAT
* * * * * * * * *
109699 AAACATAGTATTCTCATAAAGATACACGATATTGATGCTTTGGTTTCACAAGAAAGGCTTTCTTG
1 AAACACATTCTCCTCATTAGGATAAATGATATTGATGCTTTGGTTTCACAAGAAAGGCTTTCTTT
* *
109764 CCATCAATTTTTGTAAAGTCTAAGTTTGTGCCTTAAATGAGACAAATATGGATTCT-AGTAATGA
66 CCACCAATTTTTGTAAAGTCTAAGTTT-TGCCTTAAATGAGACAAATATCGATTCTCA-TAATGA
* *
109828 TCTTCATTCATTTTGTGATTAGGCACTAT
129 TCTCCATTCATTTTGTGATTAGGCACCAT
*
109857 AAACACATTCTCCTCATTAGGATAAATGTTATTG
1 AAACACATTCTCCTCATTAGGATAAATGATATTG
109891 CTGATTTTCT
Statistics
Matches: 494, Mismatches: 128, Indels: 86
0.70 0.18 0.12
Matches are distributed among these distances:
155 7 0.01
156 37 0.07
157 141 0.29
158 161 0.33
159 135 0.27
160 13 0.03
ACGTcount: A:0.31, C:0.19, G:0.14, T:0.36
Consensus pattern (157 bp):
AAACACATTCTCCTCATTAGGATAAATGATATTGATGCTTTGGTTTCACAAGAAAGGCTTTCTTT
CCACCAATTTTTGTAAAGTCTAAGTTTTGCCTTAAATGAGACAAATATCGATTCTCATAATGATC
TCCATTCATTTTGTGATTAGGCACCAT
Found at i:112983 original size:476 final size:472
Alignment explanation
Indices: 111678--113450 Score: 2022
Period size: 479 Copynumber: 3.7 Consensus size: 472
111668 TCTATAATGA
* * * *
111678 TTTTCTTTGCCCTATTTTCCATAAAATCAAAGTTTATCCCTTATATAAGACCAGCATTGATTC-C
1 TTTTCTTTGCCCTATTTTCCATAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTC
* * * * *
111742 TATAATAATCTCCATTCCTTTGAAGATTGGGAACCAAAAGGACATTCCCTTCATTAGGATGCATG
66 -ATAATAGTCTCCATTACTTTCAAGATTGGGAACCAAAAAGACATTCCCTTCATTAGGATACATG
* *
111807 ACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTACTTTCCATCATTTTTAATAGAATCAAAGTTT
130 ACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCATTTTT--TAGAATCAAAGTTT
* * * * * *
111872 GTTTCTTAAATAAGACAAACATCAATACTCACATTAATCCCCATTCTTTTCAAGATTAAGCACCA
193 GTCTCTTAAATAAGACAAACAACAATAGTCACACTAATCCCCATTCTTTTCAGGATTAGGCACCA
* *
111937 TAAACATAGTCTT-TCCATTAGGATACACGATATTGGTGCTATGG-TTCACAAGAAAGGA----T
258 TAAACATAGTCTTCT-CATAAGGATACACGATATTGATGCTATGGTTTCACAAGAAAGGATTTTT
* *
111996 TCCCACCAATTTTTGTAAAATCTAAGTTCGT-ACTTCAAATGAGAAAAACATGGATTCTAGTAAT
322 TCCCACCAATTTTTGTAAAGTCTAAGTTCGTGAC-TCAAATGAGACAAACATGGATTCTAGTAAT
* * *
112060 TATCTTCATTTATTTTGTGATTAGGCACGATAAACACATTCTCCTCATTAGGATAAATGATATTG
386 GATCTTCATTAATTTTGTGATTAGGCACTAT-AACACATTCTCCTCATTAGGATAAATGATATTG
* * * *
112125 ATCAGTTTTTTTGCTTGAAAATC
450 ATGATTTTTTTTGCATGAGAATC
* * * *
112148 TTTTCTTTGCCCT-TTTTCCTTATAATCAAAATTCATCCTTTAAATAAGACAAGCATCGATTCTC
1 TTTTCTTTGCCCTATTTTCCATAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTC
* * * * *
112212 ATAATAGTCTCCATTATTTTCAGGATTGAGAACCTAAAACG-CATTCCCTTTATTAGGATACATG
66 ATAATAGTCTCCATTACTTTCAAGATTGGGAACC-AAAAAGACATTCCCTTCATTAGGATACATG
* * * *
112276 ACATTGATGCTTTGGTGTCGCAAGAAACGCTTTTCTTTCCCCCGTTTTTTATTGAATAAAAGTTT
130 ACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCATTTTTTA--GAATCAAAGTTT
* * * * *
112341 GGCTCTTAAATAA-CCAAA-AATGAATAGTCAAACTAAT-CTCATTCTTTTCAGGATTAGGCACC
193 GTCTCTTAAATAAGACAAACAA-CAATAGTCACACTAATCCCCATTCTTTTCAGGATTAGGCACC
* * * * * *
112403 GTAAACATAGTCTTCTCATAAGGATACACGATATTAAAGCTTTGGTTTCACAAGAAAGGCTTTCT
257 ATAAACATAGTCTTCTCATAAGGATACACGATATTGATGCTATGGTTTCACAAGAAAGGATTTTT
* * * *
112468 TCCCACCAGTTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGGCAAGCATGGATTCTAGTAATG
322 TCCCACCAATTTTTGTAAAGTCTAAGTTCGTGACTCAAATGAGACAAACATGGATTCTAGTAATG
* * * * *
112533 ATCTTTATTAAATTTGTGATTAGGCACTATGAACATATCCTCCTCATTAGAATAAATGATATTGA
387 ATCTTCATTAATTTTGTGATTAGGCACTAT-AACACATTCTCCTCATTAGGATAAATGATATTGA
*
112598 TGATTTTCTTTTGCGTGAGAATC
451 TGATTTT-TTTTGCATGAGAATC
* * * * *
112621 TTTTTCTTTGTCCTATTTTCCATAAAAACAAAGTTCACCCCTTAAATAAGATAAGCATCAATTCT
1 -TTTTCTTTGCCCTATTTTCCATAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCT
* ** * * * * *
112686 CGTAGCAGTCTCCAATT-TTTTCAAGTTTGGGAACTGAAAATG-CATACCCTTCATTAGGATACA
65 CATAATAGTCTCC-ATTACTTTCAAGATTGGGAAC-CAAAAAGACATTCCCTTCATTAGGATACA
* * *
112749 TGACATTGATGC-TTGGTGTCACAAGAAATGCTTTTCTTTCTC-CCGTTTTCGTTAGAATCAAAG
128 TGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTC-CACCATTTT--TTAGAATCAAAG
* * * * * * *
112812 TTTGCCTCTAAAATAGGACAAACAAGAATAGTCATACTAATCCCGATTCTTTTCAGGATTAGGCG
190 TTTGTCTCTTAAATAAGACAAACAACAATAGTCACACTAATCCCCATTCTTTTCAGGATTAGGCA
* * * * * * *
112877 CCATGAAA-ATAGTATTCTAAGAAGTATACACGATATTGATGCTGTGGTTTCGCAAGCAA-GATT
255 CCAT-AAACATAGTCTTCTCATAAGGATACACGATATTGATGCTATGGTTTCACAAGAAAGGATT
* * * * *
112940 TTCTTCCCACCAATTTTCGTAAAGTCTGAGTTCATGACTCAAATGTGACAAACAAGGATTCTAGT
319 TT-TTCCCACCAATTTTTGTAAAGTCTAAGTTCGTGACTCAAATGAGACAAACATGGATTCTAGT
* *
113005 AATGATCTTCATTCATTTTGTGATTAGGCACTATACACACATTCTCCTCCTTAGGATAAATGATA
383 AATGATCTTCATTAATTTTGTGATTAGGCACTATA-ACACATTCTCCTCATTAGGATAAATGATA
*
113070 TTAATGATTTTTTTTTTTTTGCATG-GAAATC
447 TTGATGA-----TTTTTTTTGCATGAG-AATC
* * ** *
113101 TTTTCTTTGCCCTATTTTCCATAAAATCAAACTTTATTGCTTAAATATGACAAGCATCGATTCTC
1 TTTTCTTTGCCCTATTTTCCATAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTC
* * * * *
113166 GTAATAGTTTCTACTCCTTTCAAGATTGGGAACCAAAAAGACATTCCCTTCATTAGGATACATGA
66 ATAATAGTCTCCATTACTTTCAAGATTGGGAACCAAAAAGACATTCCCTTCATTAGGATACATGA
* *
113231 CATTGATGCTTTGGTGTCGTAAGAAAAGCTTTTCTTTCCACCATTTTTTATAGAATCAAAATTTG
131 CATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCA-TTTTT-TAGAATCAAAGTTTG
* * * * * * * *
113296 TCTTTTAAATAAGATAAACATCAATAGTAACACTAATCCCCATTTTTTTGA-GATTAGGCACGAA
194 TCTCTTAAATAAGACAAACAACAATAGTCACACTAATCCCCATTCTTTTCAGGATTAGGCACCAT
* * * *
113360 AAACATAGTCTTTTCATTAGGATACACGATATTGGTGCTATGGTTCCACAAGAAAGGATTTTTTC
259 AAACATAGTCTTCTCATAAGGATACACGATATTGATGCTATGGTTTCACAAGAAAGGATTTTTTC
113425 CCACCAATTTTTGTAAAGTCTAAGTT
324 CCACCAATTTTTGTAAAGTCTAAGTT
113451 TTTGTCTCAA
Statistics
Matches: 1090, Mismatches: 173, Indels: 71
0.82 0.13 0.05
Matches are distributed among these distances:
467 62 0.06
468 30 0.03
469 156 0.14
470 19 0.02
472 119 0.11
473 14 0.01
474 66 0.06
475 127 0.12
476 188 0.17
477 3 0.00
478 10 0.01
479 190 0.17
480 98 0.09
481 8 0.01
ACGTcount: A:0.31, C:0.18, G:0.14, T:0.36
Consensus pattern (472 bp):
TTTTCTTTGCCCTATTTTCCATAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTC
ATAATAGTCTCCATTACTTTCAAGATTGGGAACCAAAAAGACATTCCCTTCATTAGGATACATGA
CATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCATTTTTTAGAATCAAAGTTTGTC
TCTTAAATAAGACAAACAACAATAGTCACACTAATCCCCATTCTTTTCAGGATTAGGCACCATAA
ACATAGTCTTCTCATAAGGATACACGATATTGATGCTATGGTTTCACAAGAAAGGATTTTTTCCC
ACCAATTTTTGTAAAGTCTAAGTTCGTGACTCAAATGAGACAAACATGGATTCTAGTAATGATCT
TCATTAATTTTGTGATTAGGCACTATAACACATTCTCCTCATTAGGATAAATGATATTGATGATT
TTTTTTGCATGAGAATC
Found at i:113944 original size:18 final size:18
Alignment explanation
Indices: 113921--113958 Score: 67
Period size: 18 Copynumber: 2.1 Consensus size: 18
113911 ATTGATGATT
*
113921 TTGTTTTGCGTGAAAATC
1 TTGTTTTGCATGAAAATC
113939 TTGTTTTGCATGAAAATC
1 TTGTTTTGCATGAAAATC
113957 TT
1 TT
113959 TTCTTTGCCA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.24, C:0.11, G:0.18, T:0.47
Consensus pattern (18 bp):
TTGTTTTGCATGAAAATC
Found at i:115138 original size:476 final size:476
Alignment explanation
Indices: 113461--123031 Score: 10146
Period size: 477 Copynumber: 20.3 Consensus size: 476
113451 TTTGTCTCAA
* * * * ** * ** *
113461 GAAATCATTTATTTGCCCTATATTCCATAAAATCATTGTTTA-TTCTTAAATAAGACAAGAATCG
1 GAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCACCCCTTAAATAAGACAAGCATCG
* * * *
113525 ATTCTCGTAACAATCTCCATT-TTTTCAAGATTGTGAGCCAAAAACACATTCCCTTCAATAGGAT
66 ATTCTCGTAACAGTCTCCATTCTTTTCAAGATTGGGAACCAAAAACACATTCCCTTCATTAGGAT
*
113589 ACATGACATTGATGCTTTGGTGTCGCAAGAAA-GCTTTTCTTTCCACCATTTTTGATAGAATCAA
131 ACATGACATTGATGCTTTGGTGTCGCAAGAAATGCTTTTCTTTCCACCGTTTTTGATAGAATCAA
* * *
113653 AGTTTGTCTCTTAAATAAGACAAACATGAATACTCATACTAATCCCCATTCTTTTCAGGATTAGG
196 AGTTTGCCTCTTAAATAAGACAAACAAGAATAGTCATACTAATCCCCATTCTTTTCAGGATTAGG
* * * * * *
113718 CACCATAAACAAAGTCTTGTCATAAGGAAACACAATATTGATGCTTTGGTTTCGCAAGAAA-AGC
261 CACCATAAACATAGTATTCTCATAAGTATACACGATATTGATGCTTTGGTTTCGCAAGAAAGA-C
* * * * *
113782 TTTCTTCCCAACAATTTTTGTAAAGTCTAAGTTCATGCCTCAAATGAGACAAACATAGTTTCCAG
325 TTTCTTCCCACCAATTTTTGTAAAGTCTAAGTTCATGACTCAAATGAGACAAACATGGATTCTAG
* * **
113847 TAATGATTTTCATTCATTTTGTGATTAGGCAC-ATAAGCACATTCTCCTTGTTAGCG-TAAATGA
390 TAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAG-GATAAATGA
113910 TATTGATGATTTTGTTTTGCGTGAAAATCTTGTTTTGCATG
454 TATTGATGA-------TT---T-----TC---TTTTGCATG
* * **
113951 AAAATCTTTTCTTTGCCATATTTTCCTTAAAATCAATA-TTCATACCTTAAATATA-ACAAGCAT
1 GAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAA-AGTTCACCCCTTAAATA-AGACAAGCAT
* * * * *
114014 CAATGCTTGTAACAGTCTCCATTATTTTCAAGATTGGGAACCTAAAACACATTCCCTTCATTAGG
64 CGATTCTCGTAACAGTCTCCATTCTTTTCAAGATTGGGAACCAAAAACACATTCCCTTCATTAGG
* * * *
114079 ATACATGACATTGATGCTTTGGTGTCGTAAGAAAAGCTTTTCTTTACACCGTTTTTGATTGAATC
129 ATACATGACATTGATGCTTTGGTGTCGCAAGAAATGCTTTTCTTTCCACCGTTTTTGATAGAATC
* * * ** *
114144 AAAGTTTGTCTCTAAAATAAGATAAGTAAGAATAGTCATACTAATCCCCAATCTTTTCAGGATTA
194 AAAGTTTGCCTCTTAAATAAGACAAACAAGAATAGTCATACTAATCCCCATTCTTTTCAGGATTA
*** * * * * * * *
114209 GGTGTCATAAACATAGTCTTCTAAAAAATGATACATGATATTGAAGCTTTGGTTTCACAAGAAAG
259 GGCACCATAAACATAGTATTCTCATAAGT-ATACACGATATTGATGCTTTGGTTTCGCAAGAAAG
* * * * ** **
114274 GCTTTCCTCCC-GCAGATTTTTGTAAAGTCTAAGTTCATGCCTCATTTGAGGTAAACATGGATTC
323 ACTTTCTTCCCACCA-ATTTTTGTAAAGTCTAAGTTCATGACTCAAATGAGACAAACATGGATTC
*
114338 TAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACA-TCTTCTTCATTAGGATAAA
387 TAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTC-TCCTCATTAGGATAAA
*
114402 TGATATTGATGATTTTCTTTTGCGTG
451 TGATATTGATGATTTTCTTTTGCATG
* * * *
114428 GAAATCTTTTCTTTGCCTTATTTT-CTGTAAAAACAAAGTTCACCTCTTAAATAAGATAAGCATC
1 GAAATCTTTTCTTTGCCCTATTTTCCT-TAAAATCAAAGTTCACCCCTTAAATAAGACAAGCATC
* * * * * * * * *
114492 AATTGTTGCAACAGTCTCCAGTATTTTCAAG-TTCGGGAACCAAAAACGCATACCCTTCGTTAGG
65 GATTCTCGTAACAGTCTCCATTCTTTTCAAGATT-GGGAACCAAAAACACATTCCCTTCATTAGG
* ** * *
114556 ATAGATGACATTGATGCTTTGGTGTCAAAAGAAATGCTTTTCTTTCCACCATTTTCGATAGAATC
129 ATACATGACATTGATGCTTTGGTGTCGCAAGAAATGCTTTTCTTTCCACCGTTTTTGATAGAATC
** * * **
114621 AAAGTTTATCTCTGAAATAAAACAAACAAGAATAGTCATACTAATCCCCATTCTTTTTGGGATTA
194 AAAGTTTGCCTCTTAAATAAGACAAACAAGAATAGTCATACTAATCCCCATTCTTTTCAGGATTA
* *
114686 GGCACCATAAACATAGTATTTTCATAAGTATACACGATATTGATGCTTTGGTTTCACAAGAAAGA
259 GGCACCATAAACATAGTATTCTCATAAGTATACACGATATTGATGCTTTGGTTTCGCAAGAAAGA
* ** * * * * *
114751 CTTTTTTCCTGCCAATTTTCGTAAAGTTTGAGTTCGTGACTCAAAT-ATGACAAACCAT-GAGTC
324 CTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTTCATGACTCAAATGA-GACAAA-CATGGATTC
* **** * *
114814 TACTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACATGCCCTCCTCATTAAGTTAAAT
387 TAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAAT
*
114879 GACATTGATGATTTTCTTTTG-ATG
452 GATATTGATGATTTTCTTTTGCATG
** *
114903 GAAATCTTTTCTTTGCCCTATGATCCATAAAATCAAAGTTCACCCCTTAAATAAGACAAGCATCG
1 GAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCACCCCTTAAATAAGACAAGCATCG
* ** * * * * *
114968 ATTCTCGTAACAGTCTCCAGTCTTTTCAATTTTGGGAACCAAAAACACATACTCGTCGTTAGAAT
66 ATTCTCGTAACAGTCTCCATTCTTTTCAAGATTGGGAACCAAAAACACATTCCCTTCATTAGGAT
* * * *
115033 ACATGACATTGATGCATTGTTGTTGCAAGAAATGCTTTTCTTTCCACCGTCTTTGATAAGAATCA
131 ACATGACATTGATGCTTTGGTGTCGCAAGAAATGCTTTTCTTTCCACCGTTTTTGAT-AGAATCA
* * * * * *
115098 ATGTTTGCCTCTAAAATAGGAGAAACAAGAATAATCATACTAATCACCATTCTTTTC-GAGATTA
195 AAGTTTGCCTCTTAAATAAGACAAACAAGAATAGTCATACTAATCCCCATTCTTTTCAG-GATTA
* *
115162 GGCACCATAAACATAGTATTCTCATAAGTATACACAATATTGATGCATTGGTTTCGCAAGAAAGA
259 GGCACCATAAACATAGTATTCTCATAAGTATACACGATATTGATGCTTTGGTTTCGCAAGAAAGA
** ** * *
115227 CTTTCTTCCCACCAATTTTTGTAAAGTCTGGGTTTGTGACTCAAATGTGACAAACAAGGA-T-T-
324 CTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTTCATGACTCAAATGAGACAAACATGGATTCTA
* * * *
115289 -TAATGATCTTCATTGATTTTGTGATTAGGCACTATAAAAATATTCTCCTCCTTAGGATAAATGA
389 GTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGA
*
115353 TATTGATGATTTTTTTTTGCATG
454 TATTGATGATTTTCTTTTGCATG
* * * * * * *
115376 GAAATCTTTTCTTT-CCTTATTTTCCATAAAGTCAAAGTTTACCTCTTAAATAAGATAAGCATTG
1 GAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCACCCCTTAAATAAGACAAGCATCG
* * * * * *
115440 ATTCTTGTAATAGTCACTATTCCTTTCAAGATTGGGAACCAAAAAGACATTCCCTTCATTAGGAT
66 ATTCTCGTAACAGTCTCCATTCTTTTCAAGATTGGGAACCAAAAACACATTCCCTTCATTAGGAT
* * *
115505 ACATGACATTGATGCTTTGGTGTCGCAAGAAA-GCTTTTCTTTACATCGTTTTTGATAGATTCAA
131 ACATGACATTGATGCTTTGGTGTCGCAAGAAATGCTTTTCTTTCCACCGTTTTTGATAGAATCAA
** * *
115569 AGTTTATCTCTTAAAAAAGACAAACATGAATAGTCATACTAATCCCCATTCTTTTCAGGATTAGG
196 AGTTTGCCTCTTAAATAAGACAAACAAGAATAGTCATACTAATCCCCATTCTTTTCAGGATTAGG
* * * * * *
115634 CACCATAAACATAGTCTTCTCA-ATGGGATACACGGTATTGATGCTTTGGTTTTGCAAGAAAGGC
261 CACCATAAACATAGTATTCTCATA-AGTATACACGATATTGATGCTTTGGTTTCGCAAGAAAGAC
* * *
115698 TTTCTTTCTACCAATTTTTGTAAAGTCTAAGTTCGTG-CATCAAATGAGACAAACATGGATTCTA
325 TTTCTTCCCACCAATTTTTGTAAAGTCTAAGTTCATGAC-TCAAATGAGACAAACATGGATTCTA
* * *
115762 CTAATGATCTTTATTCATTTTGTGCTTAGG-----------CA--CT-CT-A--A--AT--A--A
389 GTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGA
* *
115804 TATTGATCATTTTCTTTTCCATG
454 TATTGATGATTTTCTTTTGCATG
* * * * * * *
115827 GAAATCTTTTCTTTGCCCT-TTTTCCTTATAATTAAAATTCATCCCTCAAAGAAGACAAGCATCA
1 GAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCACCCCTTAAATAAGACAAGCATCG
* ** * * * * *
115891 ATTCTCGTAACAGTCTCCATTATTTTCTGGATTGAGAACCAAGAACACATTTCTTTCATTAAGAT
66 ATTCTCGTAACAGTCTCCATTCTTTTCAAGATTGGGAACCAAAAACACATTCCCTTCATTAGGAT
* * * ** *
115956 ACATGACATTGACGCATTGGTGTCGCAAGAAACGCTTTTCTTTTCC-TTGTTCTTGATAGAATCA
131 ACATGACATTGATGCTTTGGTGTCGCAAGAAATGCTTTTC-TTTCCACCGTTTTTGATAGAATCA
* * ** * *
116020 AAGTTTGGCTCTTAACTAACCCAAA-AATGAATAGTCA-ATCTAATCCCCATTCTTTTCGGGAGT
195 AAGTTTGCCTCTTAAATAAGACAAACAA-GAATAGTCATA-CTAATCCCCATTCTTTTCAGGATT
* * * *
116083 AGGCACCATAAACATAGCATTCTCACAAGTGTACACGATATTGATGCTTTGGTTTTGCAAGAAAG
258 AGGCACCATAAACATAGTATTCTCATAAGTATACACGATATTGATGCTTTGGTTTCGCAAGAAAG
** * *
116148 ACTTTCTTCCCACCAATTTTCATAAAGTCTGAGTTCATGACTCAAAT-ATGACAAACAAGGATTC
323 ACTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTTCATGACTCAAATGA-GACAAACATGGATTC
* * * *
116212 TAGTAATGATCTTCATTCATTTTGTTATTAGGCACTATAAACACATCCTCCTCAATAGGACAAAT
387 TAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAAT
*
116277 GATATTGATGATTTTTTTTTTGCATG
452 GATATTGATGA-TTTTCTTTTGCATG
* * * ** *
116303 GAGATCTTTTCTTTGCCCTATTTTCCATAAAATCAATGTTCACCATTTAAATAAAACAAGCATCG
1 GAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCACCCCTTAAATAAGACAAGCATCG
* * * * * * * *
116368 ATTCTCGTAACAGTCTCCAGTCTTTGCAAGTTTGGGAACCGAAAACGCATACCCTTCGTTAAGAT
66 ATTCTCGTAACAGTCTCCATTCTTTTCAAGATTGGGAACCAAAAACACATTCCCTTCATTAGGAT
* * * **
116433 ACATGATATTGATGCTTTGGTGTCGCAAGAAATGCTTTTTTTTCCACCATTTTCAATAGAATCAA
131 ACATGACATTGATGCTTTGGTGTCGCAAGAAATGCTTTTCTTTCCACCGTTTTTGATAGAATCAA
* * * * * *
116498 AGTTTGCCTCTAAAATAGGACAAGCAAGACTAGTCATACTAATCCCCATTCTTTTCGGGATTTGG
196 AGTTTGCCTCTTAAATAAGACAAACAAGAATAGTCATACTAATCCCCATTCTTTTCAGGATTAGG
* * * * * *
116563 CATCATAAACATAGTATTCTCATAAATATACATGATATT-AGGGCTATGGTTTCACAAGAAACGA
261 CACCATAAACATAGTATTCTCATAAGTATACACGATATTGA-TGCTTTGGTTTCGCAAGAAA-GA
* * *
116627 -TTTTTTCCTC-CCAATTTTTGTAAAGTCTAAGTTCAT-CCTTTAAATGAGACAAACATGGATTC
324 CTTTCTTCC-CACCAATTTTTGTAAAGTCTAAGTTCATGAC-TCAAATGAGACAAACATGGATTC
* * *
116689 TAGTAATGATCTTTATTCATTTTGTGATTAAGCACTATAAACACATTCTCCACATTAGGATAAAT
387 TAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAAT
* * * *
116754 GATATTGATCAGTTTGTTTTGTATG
452 GATATTGATGATTTTCTTTTGCATG
* * *
116779 GGAATCTTTTC-TT----TA----CCTT----T-----TT---TCCTT--ATAA-AC-A-C--GG
1 GAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCACCCCTTAAATAAGACAAGCATCG
* * * ** * ** *
116816 ATTCTCAT-ACTAGTCTCCATTATTTTTCAGGATTAAGAACCTAAAACACATTCATTTCTTTTA-
66 ATTCTCGTAAC-AGTCTCCATT-CTTTTCAAGATTGGGAACCAAAAACACATTCCCTTC-ATTAG
* *
116879 GATACATGACATTGATGCTTTGGTGTCGCAAGAAATGCTTTTCTTTCCCCCGTTTTTTATAGAAT
128 GATACATGACATTGATGCTTTGGTGTCGCAAGAAATGCTTTTCTTTCCACCGTTTTTGATAGAAT
* * * *
116944 -AATAGTTTGGCTCTTAAATAACAGAAA-AATGAATAGTCAAACTAATCCCCATTCTTTTCAGGA
193 CAA-AGTTTGCCTCTTAAATAAGACAAACAA-GAATAGTCATACTAATCCCCATTCTTTTCAGGA
* * * * *
117007 CTAGGCACCATAAACATAGTCTTCTCATAAGCATACACAATATTGATGCTTTAGTTTCGCAAGAA
256 TTAGGCACCATAAACATAGTATTCTCATAAGTATACACGATATTGATGCTTTGGTTTCGCAAGAA
** * *
117072 AGGGTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTTCAT-ACCTCAAATGAGACACACATTGAT
321 AGACTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTTCATGA-CTCAAATGAGACAAACATGGAT
* ** *
117136 TCTAGTAATGATCTTCATTCATTTTGTGATAAGGCACTATAAATGCATTCTCCTTATTAGGATAA
385 TCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAA
* *
117201 ATGATATTGGTGA-TTT-TTTTGCAAG
450 ATGATATTGATGATTTTCTTTTGCATG
* * * * * * * * * *
117226 GAAAT-ATTCCTTTGCCTTATTTTGCTTAAAATCAAAGTTTATCCCATAAAGAAAATAAGCATCG
1 GAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCACCCCTTAAATAAGACAAGCATCG
* * * * ** * * *
117290 ATTCTCATAATAGTCTCCCTTATTTTCAAGATCAGGAACCTATAACACATTTCCTTCATTAGGAT
66 ATTCTCGTAACAGTCTCCATTCTTTTCAAGATTGGGAACCAAAAACACATTCCCTTCATTAGGAT
* * * * * * * * * *
117355 ACATGACCTTGATACTTTGGTGTCGTAAGAAAAGCTTTTCTGTACACCATTGTTGACAGATTCAA
131 ACATGACATTGATGCTTTGGTGTCGCAAGAAATGCTTTTCTTTCCACCGTTTTTGATAGAATCAA
* *
117420 AGTTTGCCTCTTAAATAAGACAAA-AATGAATAGTCATACTAATCCCCAGTCTTTTCACGATTAG
196 AGTTTGCCTCTTAAATAAGACAAACAA-GAATAGTCATACTAATCCCCATTCTTTTCAGGATTAG
* * * * * * *
117484 ACACCATAAACATAGTCTTCTCAAAAAG-ATGCATGATATTGATGCTTTGGTTTCACAAGAAAGG
260 GCACCATAAACATAGTATTCTC-ATAAGTATACACGATATTGATGCTTTGGTTTCGCAAGAAAGA
* * ** * *
117548 C-TTCTGTCTCACCAATTTTTGAAAAGTCTAAGTTTGTGAATCAAATGAGGCAAACATGGATTCT
324 CTTTCT-TCCCACCAATTTTTGTAAAGTCTAAGTTCATGACTCAAATGAGACAAACATGGATTCT
* * *
117612 ACTAATGATCTTTATTCATTTTGTGATTAGGCACTATAAACACA-CCTCCTCATTAGGATAAATG
388 AGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATG
117676 ATATTGATGATTTTCTTTTG-ATG
453 ATATTGATGATTTTCTTTTGCATG
* *
117699 GAAATCTTTTCTTTGCCCTATTTT-CTATAAAATCAAAGTTTACCCTTTAAATAAGACAAGCATC
1 GAAATCTTTTCTTTGCCCTATTTTCCT-TAAAATCAAAGTTCACCCCTTAAATAAGACAAGCATC
* * * ** ** * *
117763 GATTCTCATAATAGTCT-CAGTCTTTTCAATTTTGGGAACTGAAAACACATACCCTTCCTTAGGA
65 GATTCTCGTAACAGTCTCCATTCTTTTCAAGATTGGGAACCAAAAACACATTCCCTTCATTAGGA
* ** * *
117827 TACATGAAATTGATGAATTGGTGTTGCAAGAAATGCTTTTCTTTCCACC---ATTGATAGAATCA
130 TACATGACATTGATGCTTTGGTGTCGCAAGAAATGCTTTTCTTTCCACCGTTTTTGATAGAATCA
* * * * *
117889 AAGTTTGCCTCTGAAATAGGACAAACAAGAATGGCCATACTAA-CCGCCATTCTTTTCAAGATTA
195 AAGTTTGCCTCTTAAATAAGACAAACAAGAATAGTCATACTAATCC-CCATTCTTTTCAGGATTA
* * * * * *
117953 GGCATCGTAAACATAGTATTCTCATAAGTATACATGATATTGACGCATTGGTTTCGCACGAAAGA
259 GGCACCATAAACATAGTATTCTCATAAGTATACACGATATTGATGCTTTGGTTTCGCAAGAAAGA
* * ** * * *
118018 CTTTCTTCTCACCAATTTTTGTAAAGACTGGGTTCGTGACTCAAATGGGACAAACAAGGATTCTA
324 CTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTTCATGACTCAAATGAGACAAACATGGATTCTA
* *
118083 GTAATGATCTTCATTGATTTTGTGATTAGACACTATAAACACA-T-T-CTCATTAGGATAAATGA
389 GTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGA
*
118145 TATGGATGATTTTCTTTTGCATG
454 TATTGATGATTTTCTTTTGCATG
* * * *
118168 GAAATCTTTTCTTTGCCTTATTTTCCATAAAATCAAAGTTTACCTCTTAAATAAGACAAGCATCG
1 GAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCACCCCTTAAATAAGACAAGCATCG
* ** * * *
118233 ATTCTTGTAATTGTCTCCATTCCTTTCAAGATTGGGAACCAAAAAGACATTCCCTTCATTAGGGT
66 ATTCTCGTAACAGTCTCCATTCTTTTCAAGATTGGGAACCAAAAACACATTCCCTTCATTAGGAT
* * * * *
118298 ACATGACATTGTTGCTTTGGTGTCGCAAGAAA-GCTTTTCCTTACATCGTTTTTGATAGATTCAA
131 ACATGACATTGATGCTTTGGTGTCGCAAGAAATGCTTTTCTTTCCACCGTTTTTGATAGAATCAA
* * * *
118362 AGTTTGTCTCTTAAAAAAGACAAACATGAATAGTCATACTAATCCCCATTCTTTTCAGGATTAGA
196 AGTTTGCCTCTTAAATAAGACAAACAAGAATAGTCATACTAATCCCCATTCTTTTCAGGATTAGG
* * * * * *
118427 CACCATAAACATAGTCTTCTCA-ATGGGATACATGATATTGATGCTTTGGTTTTGCAAGAAAGGC
261 CACCATAAACATAGTATTCTCATA-AGTATACACGATATTGATGCTTTGGTTTCGCAAGAAAGAC
** *
118491 TTTCTTCCTGCCAATTTTTGTAAAGTCTAAGTTCATG-CATCAAATAAGACAAACATGGATTCTA
325 TTTCTTCCCACCAATTTTTGTAAAGTCTAAGTTCATGAC-TCAAATGAGACAAACATGGATTCTA
* *
118555 CTAATGATCTTCAATCATTTTGTGATTAGGCACTAT----A-A-------C-----------TGA
389 GTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGA
*
118597 TATTGATCATTTTCTTTTGCATG
454 TATTGATGATTTTCTTTTGCATG
* * * * *
118620 GAAATCTCTTT-TTTTCCCT-TTTTCCTTATAATTAAAATTCATCCCTTAAATAAGACAAGCATC
1 GAAATCT-TTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCACCCCTTAAATAAGACAAGCATC
* * * ** * * *
118683 AATTCTCGTAATAGTCTCCATTATTTTCTGGATTGGGAACCAAGAACACATTCCATTCATTAAGA
65 GATTCTCGTAACAGTCTCCATTCTTTTCAAGATTGGGAACCAAAAACACATTCCCTTCATTAGGA
** * * * * *
118748 TACATGACATTGACACATTGGTGTTGCAAGAAACGCTTCT-TTTCC-CTGTTTTTGATAGAATCA
130 TACATGACATTGATGCTTTGGTGTCGCAAGAAATGCTTTTCTTTCCACCGTTTTTGATAGAATCA
* * ** ** *
118811 AAGTTTGGCTCTTAACTAACCCAAA-AATGAATAGTCGAT-CTAATCCCCATTCTTTTTGGGAGT
195 AAGTTTGCCTCTTAAATAAGACAAACAA-GAATAGTC-ATACTAATCCCCATTCTTTTCAGGATT
* * *
118874 AGGCACCATAAACATAGCATTCTCATAAGTATACACAATATTGATGCTTTGGTTTTGCAAGAAAG
258 AGGCACCATAAACATAGTATTCTCATAAGTATACACGATATTGATGCTTTGGTTTCGCAAGAAAG
** * ** * *
118939 ACTTTCTTCCCACCAATTTTCATAAAGTTTGTGTTCATGACTCAAATGTGACAAACAGGGATTCT
323 ACTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTTCATGACTCAAATGAGACAAACATGGATTCT
* * *
119004 AGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATCCTTCTCATTAAGATAAATG
388 AGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATG
*
119069 ATATTGATGATTTTCTTTTGCGTG
453 ATATTGATGATTTTCTTTTGCATG
* * * * *
119093 GAAATCTTTTCTTTGCCTTAATTTCCATAAAATCAATGTTCACCACTTAAATAAGACAAGCATCG
1 GAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCACCCCTTAAATAAGACAAGCATCG
* * * * ** ** * ** *
119158 ATTCTCATAACAGTCTCCAGTCTTTGCAAGTTTGGGAACTGAAAATGCATACCCTTTGTTAAGAT
66 ATTCTCGTAACAGTCTCCATTCTTTTCAAGATTGGGAACCAAAAACACATTCCCTTCATTAGGAT
* *
119223 ACATGATATTGATGCTTTAGTGTCGCAAGAAATGCTTTTCTTTCCACCGTTTTTGATAGAATCAA
131 ACATGACATTGATGCTTTGGTGTCGCAAGAAATGCTTTTCTTTCCACCGTTTTTGATAGAATCAA
* * * * * * * *
119288 AGTTTACCTCTGAAAGAGGACAAGCAAGACTAGTCATACTAATCTCCATTCTTTTCGGGATTAGG
196 AGTTTGCCTCTTAAATAAGACAAACAAGAATAGTCATACTAATCCCCATTCTTTTCAGGATTAGG
* * * **
119353 CACCATAAACATAGTATTGTCATAAGTATACACGATATTGGTGCTATGGTTTTACAAGAAAGGA-
261 CACCATAAACATAGTATTCTCATAAGTATACACGATATTGATGCTTTGGTTTCGCAAGAAA-GAC
* * *
119417 TTTTTTCCCACCAATTTTTGTAAAGTCTAAGTT-AT-CCTTCAAATGAGACAAACATAGATTCTA
325 TTTCTTCCCACCAATTTTTGTAAAGTCTAAGTTCATGAC-TCAAATGAGACAAACATGGATTCTA
* * *
119480 GTAATAATCTTCATTTATTTTGTGATTAGGCACTATAAACACCTTCTCCTCATTAGGATAAATGA
389 GTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGA
* *
119545 TATTGATCATTTTCTTTTACATG
454 TATTGATGATTTTCTTTTGCATG
* * * * * *
119568 AAAATCTTTTCTTTGCCCT-TTTTCCTTATAATCAAAATTCATCCCTTTAATAAGACATGCATCG
1 GAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCACCCCTTAAATAAGACAAGCATCG
* * * * * *
119632 ATTCTCGTAACTGTCTCCATTATTTTCAGGATTGGGAACCTAGAACACATTCCCTTCATTAAGAT
66 ATTCTCGTAACAGTCTCCATTCTTTTCAAGATTGGGAACCAAAAACACATTCCCTTCATTAGGAT
* * *
119697 ACATGACATTGATGCTTTGGTGTCGCAAGAAACGCTTTTCTTTCCCCCGATTTTGATAGAATCAA
131 ACATGACATTGATGCTTTGGTGTCGCAAGAAATGCTTTTCTTTCCACCGTTTTTGATAGAATCAA
* * * * *
119762 AGTTTGGCTCTTAAATAACA-AAAAAAGGAATAGTTGA-ACTAATCCCCATTCCTTTCAGGATTA
196 AGTTTGCCTCTTAAATAAGACAAACAA-GAATAG-TCATACTAATCCCCATTCTTTTCAGGATTA
* * * * *
119825 GGCACCATAAACATAGTCTTCTCATAAGGATATACGATATTGATGCTTTGGTTTTGCAAGAAAGG
259 GGCACCATAAACATAGTATTCTCATAAGTATACACGATATTGATGCTTTGGTTTCGCAAGAAAGA
* * * *
119890 CTTTCTTCCCACTAATTTTTGTAGAGTCTAAGTTCATGCCTCAAATGAGACAAACATGGATTTTA
324 CTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTTCATGACTCAAATGAGACAAACATGGATTCTA
* *
119955 G-AATGATCTTCATTCATTTTGTCATTAGGCACTATAAACACATTCTCCTTATTAGGATAAATGA
389 GTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGA
* *
120019 TATTAATGATTTTCTTTTGCGTG
454 TATTGATGATTTTCTTTTGCATG
* * * ** *
120042 GAAATCTTTTCTTTGCCCTATTTTTCTTAAGATCAATGTTCATACCTTAAATAAAACAAGCATCG
1 GAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCACCCCTTAAATAAGACAAGCATCG
* * * * *
120107 ATGCTCGTAACAGTCTCCATTATTTTTAGGATTGGGAACCTAAAACACATTCCCTTCAATTA-GA
66 ATTCTCGTAACAGTCTCCATTCTTTTCAAGATTGGGAACCAAAAACACATTCCCTTC-ATTAGGA
* * * * * * ** * *
120171 TACATGACAATAATGCTTTGGTGTCGTAAGAAAAGCTTTTCTTTACACTGCCTTTGATTGATTCA
130 TACATGACATTGATGCTTTGGTGTCGCAAGAAATGCTTTTCTTTCCACCGTTTTTGATAGAATCA
* * * * *
120236 AAGTTTGTCTTTTAAATAAGACAAACATGAATAGTCATACTAATCCCCATTCTTTTCAAGATTAA
195 AAGTTTGCCTCTTAAATAAGACAAACAAGAATAGTCATACTAATCCCCATTCTTTTCAGGATTAG
* * * * * * * * *
120301 GCGCCATAAACCTAGTCTTCTCAAAAATGGTACATGATATTGAAGCTTTGGTTTCGCAAGAAAGG
260 GCACCATAAACATAGTATTCTCATAAGT-ATACACGATATTGATGCTTTGGTTTCGCAAGAAAGA
** *
120366 CTTTCTTCCCATTAATTTTTGTAAAGTCTAAGTTCAT-ACCTCAAATGAGGCAAACATGGATTCT
324 CTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTTCATGA-CTCAAATGAGACAAACATGGATTCT
* *
120430 AGTAATGATCTTCATTCATTTTTTGATTAGGCATTATAAACACATCCTCCTCATTACATCCTCCT
388 AGTAATGATCTTCATTCATTTTGTGATTAGGCACTAT-AA-ACA-------CA-T---T-CTCCT
120495 CATTAGGATAAATGATATTGATGATTTTCTTTTGCATG
439 CATTAGGATAAATGATATTGATGATTTTCTTTTGCATG
* *
120533 GAAATCTTTTCTTTGCTCC-ATTTTCC-----AT----GTTCACCCCTTAAATAAGACAAACATT
1 GAAATCTTTTCTTTGC-CCTATTTTCCTTAAAATCAAAGTTCACCCCTTAAATAAGACAAGCATC
* * * * * ** * *
120588 GATTTTGGTAACAGTCTCCAGTCTTTTCAAGTTTGGGAACTGAAAAATGCATACCCTTCAATAGG
65 GATTCTCGTAACAGTCTCCATTCTTTTCAAGATTGGGAAC-CAAAAACACATTCCCTTCATTAGG
* * * *
120653 ATACATGA-TTTGATGCTTTGGTGTCGCAAGAAATGCTTTTTCCTTCCACCATTTTCGATAGAAT
129 ATACATGACATTGATGCTTTGGTGTCGCAAGAAATGC-TTTTCTTTCCACCGTTTTTGATAGAAT
* * ** *
120717 CAAAGTTTGCCTCTGAAATAGGACAAACAAGAATAGTCATACTAATCCCCATTCTTTTTTGAATT
193 CAAAGTTTGCCTCTTAAATAAGACAAACAAGAATAGTCATACTAATCCCCATTCTTTTCAGGATT
* *
120782 AGGCACCATAAACATAGTATTCTCATCAGTATACACGATATTGATGCTTTGGTTTGGCAAGAAAG
258 AGGCACCATAAACATAGTATTCTCATAAGTATACACGATATTGATGCTTTGGTTTCGCAAGAAAG
* * * * * *
120847 ACTTTCTTCCCA--ATATTTTTCATAAAGTTTGAGTTCGTGACTCAAATGTGACAAACAAGGATT
323 ACTTTCTTCCCACCA-ATTTTT-GTAAAGTCTAAGTTCATGACTCAAATGAGACAAACATGGATT
* * *
120910 CTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAATACATTATCCTCCTTAGGATAAA
386 CTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAA
*
120975 TGATATTGATGATTTTCTTTTGCATT
451 TGATATTGATGATTTTCTTTTGCATG
* * * * * * * *
121001 AAAATATTTTCTTTGCCCTATTTTCCATAAAATCAAAGTTTATCTCTTATATAAGACAAGCGTCG
1 GAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCACCCCTTAAATAAGACAAGCATCG
* * * ** * * **
121066 ATTCTTGTAATAGTCTTCTATTCCCTTCAAGATTGGGAACCAAAAAGACATTCCCAAT-ATTTTG
66 ATTCTCGTAACAGTC-TCCATTCTTTTCAAGATTGGGAACCAAAAACACATTCCC-TTCATTAGG
* * * * * * *
121130 ATGCATGACATTGATGATTAGGTGTCACAAGAAAAGCTTTTCTTTCCATCATTTTTGATAGAATC
129 ATACATGACATTGATGCTTTGGTGTCGCAAGAAATGCTTTTCTTTCCACCGTTTTTGATAGAATC
* * ** * * *
121195 AAAGTTTGTCTCTTAAAAAAGACAAACATCAATACTCAAACCAATCCCCATTCTTTTCAGGATTA
194 AAAGTTTGCCTCTTAAATAAGACAAACAAGAATAGTCATACTAATCCCCATTCTTTTCAGGATTA
* * * ** * *
121260 GGAACCATTAACATAGTATT-TCAGT-AGGATACACGATATTGGCGCTATGGTTTCACAAGAAAT
259 GGCACCATAAACATAGTATTCTCA-TAAGTATACACGATATTGATGCTTTGGTTTCGCAAGAAA-
* *
121323 GA-TTTTTTCCCACCAATTTTTGTAAAGTCTAAGTTCATG-CTTCAAATGAGACAAACATAGATT
322 GACTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTTCATGAC-TCAAATGAGACAAACATGGATT
121386 CTAGTAATGATCTTCATTCATTTTGTGATTAGGCAC-ATAAACACATTCTCCAT-ATTAGGATAA
386 CTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCC-TCATTAGGATAA
* * *
121449 ATGATATTGCTCAGTTTCTTTTGCATG
450 ATGATATTGATGATTTTCTTTTGCATG
* *
121476 GAAATCTTTTCTTTGCCCT-TTTTCCTTATAATCAAAATTCACCCCTTAAATAAGACAAGCATCG
1 GAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCACCCCTTAAATAAGACAAGCATCG
* * * * *
121540 ATTCTCGTAACAGTCTCCATTATTTTTCAGGATTGGGAACCTAAAACACATTCCTTTCTTTTA-G
66 ATTCTCGTAACAGTCTCCATT-CTTTTCAAGATTGGGAACCAAAAACACATTCCCTTC-ATTAGG
* * * * *
121604 ATACAAGACATTGATGCTTTGGTGTCACAAGAAACGCTTTTCTTTCTC-CTGTTTTTTATAGAAT
129 ATACATGACATTGATGCTTTGGTGTCGCAAGAAATGCTTTTCTTTC-CACCGTTTTTGATAGAAT
* * * * *
121668 CAAAGTTTGGCTCTTAAATAAGACAAA-AATGAATAGTCAAACTAATCTCCATTCTTTTCAAGAA
193 CAAAGTTTGCCTCTTAAATAAGACAAACAA-GAATAGTCATACTAATCCCCATTCTTTTCAGGAT
* * * *
121732 TAGGCACGATAAACATAGTCTTCTCATAAGGATACACGATATTGATGCTTTGGTTTCGTAAGAAA
257 TAGGCACCATAAACATAGTATTCTCATAAGTATACACGATATTGATGCTTTGGTTTCGCAAG-AA
* *
121797 AGGCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTTCATGCCTCAAATGAGACAAACATGGATT
321 AGACTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTTCATGACTCAAATGAGACAAACATGGATT
* * *
121862 CTAGTAATGATCTTCATTCATTTTGTGACTAGGCACTATAAACACATTCTCCACATTAGAATAAA
386 CTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAA
* * * * *
121927 TAATATTGATCAGTTTCGTTTGCATA
451 TGATATTGATGATTTTCTTTTGCATG
* * * * * *
121953 GAAATCTTTTTTTTGCCCT-TTTTCCTTATAGTAAAAATTCATCCCTTAAATAAGACAAGCATCG
1 GAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCACCCCTTAAATAAGACAAGCATCG
* * * * * * *
122017 ATTCTCATAACAATCTCCATTATTTTTCAGGATTAGGAACCTAAAACACATTCCCTTCTTTTA-G
66 ATTCTCGTAACAGTCTCCATT-CTTTTCAAGATTGGGAACCAAAAACACATTCCCTTC-ATTAGG
* * * * *
122081 ATACATAACATTGACGCTTTGGTGTCACAAGAAATGC-TTTCTTTCCATCATTTTTGATAGAATC
129 ATACATGACATTGATGCTTTGGTGTCGCAAGAAATGCTTTTCTTTCCACCGTTTTTGATAGAATC
* * * *
122145 AAAGTTTGCCTCTGAAATAGGACAAACAAGAATAGTCATACTACTCCCCATTCTTTTCGGGATTA
194 AAAGTTTGCCTCTTAAATAAGACAAACAAGAATAGTCATACTAATCCCCATTCTTTTCAGGATTA
* *
122210 GGCACCATAAACATAGTATTCTCGTAAGTATACACGATATTGATGCTTTGGTTTCGTAAGAAAGA
259 GGCACCATAAACATAGTATTCTCATAAGTATACACGATATTGATGCTTTGGTTTCGCAAGAAAGA
* * ** * * *
122275 CTTTCTTCCCACCAATTTTTGTAAAGTTTTAGTTTGTGACTCAAATGTGACAAATAAGGATTCTA
324 CTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTTCATGACTCAAATGAGACAAACATGGATTCTA
*
122340 GTAATGATCTTTATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTTC-TTAGGATAAATG
389 GTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCC-TCATTAGGATAAATG
* * *
122404 ATATTGCTCAGTTTCTTTTGCATG
453 ATATTGATGATTTTCTTTTGCATG
* *
122428 GAAATCTTTTCTTTGCCCT-TTTTCCTTATAATCAAAATTCACCCCTTAAATAAGACAAGCATCG
1 GAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCACCCCTTAAATAAGACAAGCATCG
* * * * *
122492 ATTCTCGTAACAGTCTCCATTATTTTTCAGGATTGGGAACCAAAGAGACA-T---TTCACTAGGA
66 ATTCTCGTAACAGTCTCCATT-CTTTTCAAGATTGGGAACCAAAAACACATTCCCTTCATTAGGA
* * *
122553 TACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCCTTTCTTTCCATCGTTTTTGATAGAATCA
130 TACATGACATTGATGCTTTGGTGTCGCAAGAAATGCTTTTCTTTCCACCGTTTTTGATAGAATCA
* ** * * *
122618 AAGTTTGTCTCTTAAATAAGACAAACATTAATACTCGTACTAATCCCCATTCTTTTTAGGATTAG
195 AAGTTTGCCTCTTAAATAAGACAAACAAGAATAGTCATACTAATCCCCATTCTTTTCAGGATTAG
* * * * * * * * * *
122683 GCTCCATAAACATAGTCTTTTCATTAGCATACACGATATTGGTGCTATGGTTTCACAAGAAAAAT
260 GCACCATAAACATAGTATTCTCATAAGTATACACGATATTGATGCTTTGGTTTCGCAAGAAAGAC
* ** * * *
122748 TTTTTTCCCACCAATTTTTGCCAAGTCTAAGCTAATG-CTTCAAATGAGAGAAACATGGATTCTA
325 TTTCTTCCCACCAATTTTTGTAAAGTCTAAGTTCATGAC-TCAAATGAGACAAACATGGATTCTA
**
122812 GTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACGTATTCTCCTCATTAGGATAAATGA
389 GTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGA
*
122877 TATTGATCATTTTCTTTTGCATG
454 TATTGATGATTTTCTTTTGCATG
* * ** * * * * *
122900 AAAATATTTTCTTTGCCCT-TTTTCCTTGTAATCAAAATGCATCCCTTAAAAAAGGCAAGCATCG
1 GAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCACCCCTTAAATAAGACAAGCATCG
* * * * * * * *
122964 ATTCTCGTTACAGTCTCCATTATTTTTAGGATTGGGAACCTAGAATACATTCCCTTCATTAAGAT
66 ATTCTCGTAACAGTCTCCATTCTTTTCAAGATTGGGAACCAAAAACACATTCCCTTCATTAGGAT
123029 ACA
131 ACA
123032 AGTCCTAATT
Statistics
Matches: 7614, Mismatches: 1221, Indels: 507
0.82 0.13 0.05
Matches are distributed among these distances:
446 3 0.00
447 15 0.00
448 26 0.00
449 305 0.04
450 213 0.03
451 279 0.04
452 256 0.03
453 14 0.00
454 1 0.00
455 8 0.00
457 1 0.00
458 2 0.00
459 1 0.00
460 2 0.00
461 2 0.00
462 1 0.00
463 5 0.00
464 2 0.00
465 2 0.00
466 2 0.00
467 10 0.00
468 97 0.01
469 101 0.01
470 434 0.06
471 97 0.01
472 779 0.10
473 435 0.06
474 810 0.11
475 901 0.12
476 968 0.13
477 996 0.13
478 53 0.01
479 3 0.00
480 5 0.00
481 8 0.00
482 192 0.03
483 120 0.02
485 1 0.00
486 4 0.00
487 1 0.00
488 2 0.00
490 33 0.00
491 96 0.01
492 73 0.01
493 107 0.01
494 117 0.02
495 31 0.00
ACGTcount: A:0.31, C:0.19, G:0.14, T:0.36
Consensus pattern (476 bp):
GAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCACCCCTTAAATAAGACAAGCATCG
ATTCTCGTAACAGTCTCCATTCTTTTCAAGATTGGGAACCAAAAACACATTCCCTTCATTAGGAT
ACATGACATTGATGCTTTGGTGTCGCAAGAAATGCTTTTCTTTCCACCGTTTTTGATAGAATCAA
AGTTTGCCTCTTAAATAAGACAAACAAGAATAGTCATACTAATCCCCATTCTTTTCAGGATTAGG
CACCATAAACATAGTATTCTCATAAGTATACACGATATTGATGCTTTGGTTTCGCAAGAAAGACT
TTCTTCCCACCAATTTTTGTAAAGTCTAAGTTCATGACTCAAATGAGACAAACATGGATTCTAGT
AATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGATA
TTGATGATTTTCTTTTGCATG
Found at i:120490 original size:14 final size:14
Alignment explanation
Indices: 120471--120499 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
120461 CATTATAAAC
120471 ACATCCTCCTCATT
1 ACATCCTCCTCATT
120485 ACATCCTCCTCATT
1 ACATCCTCCTCATT
120499 A
1 A
120500 GGATAAATGA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.24, C:0.41, G:0.00, T:0.34
Consensus pattern (14 bp):
ACATCCTCCTCATT
Found at i:127487 original size:33 final size:33
Alignment explanation
Indices: 127447--127509 Score: 117
Period size: 33 Copynumber: 1.9 Consensus size: 33
127437 CCTCTCTCTA
*
127447 TTATCTCTCCTATCTCTCCTCCTATCATCCATC
1 TTATCTCTACTATCTCTCCTCCTATCATCCATC
127480 TTATCTCTACTATCTCTCCTCCTATCATCC
1 TTATCTCTACTATCTCTCCTCCTATCATCC
127510 CTCCTATTTC
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
33 29 1.00
ACGTcount: A:0.16, C:0.41, G:0.00, T:0.43
Consensus pattern (33 bp):
TTATCTCTACTATCTCTCCTCCTATCATCCATC
Found at i:127529 original size:33 final size:33
Alignment explanation
Indices: 127448--127516 Score: 111
Period size: 33 Copynumber: 2.1 Consensus size: 33
127438 CTCTCTCTAT
* *
127448 TATCTCTCCTATCTCTCCTCCTATCATCCATCT
1 TATCTCTACTATCTCTCCTCCTATCATCCATCC
*
127481 TATCTCTACTATCTCTCCTCCTATCATCCCTCC
1 TATCTCTACTATCTCTCCTCCTATCATCCATCC
127514 TAT
1 TAT
127517 TTCTTGTTTC
Statistics
Matches: 33, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
33 33 1.00
ACGTcount: A:0.16, C:0.42, G:0.00, T:0.42
Consensus pattern (33 bp):
TATCTCTACTATCTCTCCTCCTATCATCCATCC
Found at i:129656 original size:9 final size:9
Alignment explanation
Indices: 129638--129692 Score: 53
Period size: 9 Copynumber: 6.4 Consensus size: 9
129628 TAGGAGGGAT
129638 GATAGGAGA
1 GATAGGAGA
*
129647 GATAGTAGA
1 GATAGGAGA
*
129656 GATAGGAGG
1 GATAGGAGA
*
129665 GATA--ATA
1 GATAGGAGA
*
129672 G-GAGGAGA
1 GATAGGAGA
129680 GATAGGAGA
1 GATAGGAGA
129689 GATA
1 GATA
129693 ATAGAGAGAG
Statistics
Matches: 35, Mismatches: 8, Indels: 6
0.71 0.16 0.12
Matches are distributed among these distances:
6 1 0.03
7 2 0.06
8 3 0.09
9 29 0.83
ACGTcount: A:0.44, C:0.00, G:0.42, T:0.15
Consensus pattern (9 bp):
GATAGGAGA
Found at i:129673 original size:42 final size:42
Alignment explanation
Indices: 129626--129720 Score: 138
Period size: 42 Copynumber: 2.3 Consensus size: 42
129616 AGAACGAAGA
* *
129626 AATAGGAGG-GATGATAGGAGAGATAGTAGAGATAGGAGGGAT
1 AATAGGAGGAGA-GATAGGAGAGATAATAGAGAGAGGAGGGAT
129668 AATAGGAGGAGAGATAGGAGAGATAATAGAGAGAGGAGGGAT
1 AATAGGAGGAGAGATAGGAGAGATAATAGAGAGAGGAGGGAT
* *
129710 GACAGGAGGAG
1 AATAGGAGGAG
129721 GAGAGAAGAA
Statistics
Matches: 48, Mismatches: 4, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
42 46 0.96
43 2 0.04
ACGTcount: A:0.42, C:0.01, G:0.44, T:0.13
Consensus pattern (42 bp):
AATAGGAGGAGAGATAGGAGAGATAATAGAGAGAGGAGGGAT
Found at i:135725 original size:30 final size:30
Alignment explanation
Indices: 135691--135755 Score: 96
Period size: 30 Copynumber: 2.2 Consensus size: 30
135681 TTCTCTCCTC
* *
135691 CTCCTGTCATC-CCTCCTCTCTCTATTATCT
1 CTCCTGTC-TCTCCTCCTATCTCTACTATCT
135721 CTCCTGTCTCTCCTCCTATCTCTACTATCT
1 CTCCTGTCTCTCCTCCTATCTCTACTATCT
135751 CTCCT
1 CTCCT
135756 CCTATCATCC
Statistics
Matches: 32, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
29 2 0.06
30 30 0.94
ACGTcount: A:0.09, C:0.45, G:0.03, T:0.43
Consensus pattern (30 bp):
CTCCTGTCTCTCCTCCTATCTCTACTATCT
Found at i:135742 original size:21 final size:21
Alignment explanation
Indices: 135716--135761 Score: 74
Period size: 21 Copynumber: 2.2 Consensus size: 21
135706 CTCTCTCTAT
* *
135716 TATCTCTCCTGTCTCTCCTCC
1 TATCTCTACTATCTCTCCTCC
135737 TATCTCTACTATCTCTCCTCC
1 TATCTCTACTATCTCTCCTCC
135758 TATC
1 TATC
135762 ATCCCTCTTC
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
21 23 1.00
ACGTcount: A:0.11, C:0.43, G:0.02, T:0.43
Consensus pattern (21 bp):
TATCTCTACTATCTCTCCTCC
Found at i:144966 original size:42 final size:42
Alignment explanation
Indices: 144911--145029 Score: 175
Period size: 42 Copynumber: 2.8 Consensus size: 42
144901 TTTTTCTCTC
* *
144911 CTCCTCCTGTCATCCCTCCTCTCTCTATTATCTCTCCTGTCT
1 CTCCTCCTATCATCCCTCCTCTCTCTACTATCTCTCCTGTCT
* * *
144953 CTTCTCCTATCATCCCTCCTATCTCTACTATCTCTCCTTTCT
1 CTCCTCCTATCATCCCTCCTCTCTCTACTATCTCTCCTGTCT
* *
144995 CTCCTCCTATCATCCCTCCTCTCTCTTCTTTCTCT
1 CTCCTCCTATCATCCCTCCTCTCTCTACTATCTCT
145030 TTGAGGGCTA
Statistics
Matches: 68, Mismatches: 9, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
42 68 1.00
ACGTcount: A:0.08, C:0.45, G:0.02, T:0.45
Consensus pattern (42 bp):
CTCCTCCTATCATCCCTCCTCTCTCTACTATCTCTCCTGTCT
Found at i:144971 original size:24 final size:23
Alignment explanation
Indices: 144930--145023 Score: 72
Period size: 24 Copynumber: 4.1 Consensus size: 23
144920 TCATCCCTCC
* *
144930 TCTCTCTATTATCTCTCCTGTCTCT
1 TCTC-CTATCATCCCTCCT-TCTCT
*
144955 TCTCCTATCATCCCTCC-TATC-
1 TCTCCTATCATCCCTCCTTCTCT
*
144976 TCTACTATC-T--CTCCTTTCTCT
1 TCTCCTATCATCCCTCC-TTCTCT
*
144997 CCTCCTATCATCCCTCCTCTCTCT
1 TCTCCTATCATCCCTCCT-TCTCT
145021 TCT
1 TCT
145024 TTCTCTTTGA
Statistics
Matches: 54, Mismatches: 8, Indels: 15
0.70 0.10 0.19
Matches are distributed among these distances:
18 4 0.07
20 4 0.07
21 15 0.28
22 4 0.07
23 1 0.02
24 22 0.41
25 4 0.07
ACGTcount: A:0.10, C:0.44, G:0.01, T:0.46
Consensus pattern (23 bp):
TCTCCTATCATCCCTCCTTCTCT
Found at i:144995 original size:18 final size:18
Alignment explanation
Indices: 144926--144996 Score: 52
Period size: 18 Copynumber: 3.6 Consensus size: 18
144916 CCTGTCATCC
* *
144926 CTCCTCTCTCTATTATCT
1 CTCCTTTCTCTACTATCT
*
144944 CTCCTGTCTCTTCTCCTATCAT
1 CTCCT-T-TC-TCTACTATC-T
*
144966 CCCTCCTATCTCTACTATCT
1 --CTCCTTTCTCTACTATCT
144986 CTCCTTTCTCT
1 CTCCTTTCTCT
144997 CCTCCTATCA
Statistics
Matches: 41, Mismatches: 6, Indels: 12
0.69 0.10 0.20
Matches are distributed among these distances:
18 15 0.37
20 3 0.07
21 15 0.37
22 3 0.07
24 5 0.12
ACGTcount: A:0.10, C:0.42, G:0.01, T:0.46
Consensus pattern (18 bp):
CTCCTTTCTCTACTATCT
Found at i:148076 original size:359 final size:356
Alignment explanation
Indices: 147409--148121 Score: 894
Period size: 359 Copynumber: 2.0 Consensus size: 356
147399 AATGTCCATT
* * * *
147409 ATTTTCAGGATTGAGAACCTAAAAACACTTTTCCTTTATAGGATACATGACATTGATGCTTTCGT
1 ATTTTCAGGATTGAGAACCAAAAAACACATTCCCTTCATAGGATACATGACATTGATGCTTTCGT
* * *
147474 GTCGTAAGAAAAGCATTTCTTTTCACCACTTTTATTGAATCAAACTTAATCTCTTAAATAAAACA
66 GTCGTAAAAAAAGCATTTCTTTTCAACACTTTTATAGAATCAAACTTAATCTCTTAAATAAAACA
* * * ** ** * *
147539 AACATGAATAGTCATACTAATCTCAATTTTTTTTCAGGATTAGGTGCTATAAACATAGTCTTCCT
131 AACATAAATACTCATACTAATCCCAATTCCTTTTCAGGATTAGGCACCATAAACAAAGTCTTCCT
* *
147604 AAAAGGATGCACGATATTAATGCTTTCATTTCGCAAGAAAGGCTTTCCACCCACCAATTTTTGTG
196 AAAAGGATACACGATATTAATGCTTTCATTTCGCAAGAAAGGCTTTCCACCCACCAATTTTTGTA
* * *
147669 AAGTCTAAGTTCGTGCCTTAGATGAGACAAACAAGGATTCTAGTAATGATCTTCATTCATTTTGT
261 AAGTCTAAGTTCATGCCTTAAATGAGACAAACAAGAATTCTAGTAATGATCTTCATTCATTTTGT
147734 GATTAGGCACTACTACAAACACATTCTCCTCAAC
326 GATTAGGCACTA-T--AAACACATTCTCCTCAAC
* *
147768 ATTTTCAGGATTGGGAACCAAAAAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGG
1 ATTTTCAGGATTGAGAACCAAAAAACACATTCCCTTCA-TAGGATACATGACATTGATGCTTTCG
* ** * ** *
147833 TGTC-TCAAAAAAAGCTTTTC-TTTCAACTGTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAG
65 TGTCGT-AAAAAAAGCATTTCTTTTCAACACTTTT-ATAGAATCAAACTTAATCTCTTAAATAAA
* * *
147896 ACAAACATAAATACTCTTACTAATCCCCA-TCCTTTTCGGGATTAGGCACCATAAACAAAGTCTT
128 ACAAACATAAATACTCATACTAATCCCAATTCCTTTTCAGGATTAGGCACCATAAACAAAGTCTT
* * * * * * * *** *
147960 -CTCATAGGGATACATGCTATTGATGCTTTCGTTTCTCAAGAAAGGCTTTTTTCCCACTAATTTT
193 CCT-AAAAGGATACACGATATTAATGCTTTCATTTCGCAAGAAAGGCTTTCCACCCACCAATTTT
* * *
148024 TGTAAAGTCTAAGTTTATGCCTTAAATGAGACAAACATGAATTCTGGTAATGATCTTCATTCATT
257 TGTAAAGTCTAAGTTCATGCCTTAAATGAGACAAACAAGAATTCTAGTAATGATCTTCATTCATT
* *
148089 TTTTGATTAGGCACTATAAACATATTCTCCTCA
322 TTGTGATTAGGCACTATAAACACATTCTCCTCA
148122 TTAGGATAAA
Statistics
Matches: 301, Mismatches: 49, Indels: 11
0.83 0.14 0.03
Matches are distributed among these distances:
356 15 0.05
358 3 0.01
359 194 0.64
360 89 0.30
ACGTcount: A:0.32, C:0.19, G:0.14, T:0.35
Consensus pattern (356 bp):
ATTTTCAGGATTGAGAACCAAAAAACACATTCCCTTCATAGGATACATGACATTGATGCTTTCGT
GTCGTAAAAAAAGCATTTCTTTTCAACACTTTTATAGAATCAAACTTAATCTCTTAAATAAAACA
AACATAAATACTCATACTAATCCCAATTCCTTTTCAGGATTAGGCACCATAAACAAAGTCTTCCT
AAAAGGATACACGATATTAATGCTTTCATTTCGCAAGAAAGGCTTTCCACCCACCAATTTTTGTA
AAGTCTAAGTTCATGCCTTAAATGAGACAAACAAGAATTCTAGTAATGATCTTCATTCATTTTGT
GATTAGGCACTATAAACACATTCTCCTCAAC
Found at i:149084 original size:159 final size:158
Alignment explanation
Indices: 148453--149095 Score: 424
Period size: 159 Copynumber: 4.1 Consensus size: 158
148443 TTAGATATGC
* * *
148453 GATATTGATGTTTTGGTTTCGCAAAGAAAGG-CTTTCTTCCACTAATTTTTGTTAAGTCAAAGTT
1 GATATTGATGTTTTGGTTT-GC-AAGAAAGGCCTTTTTTCCACCAATTTTTGTAAAGTCAAAGTT
* * * *
148517 CGTGCCTCAAATGAGACAAATATGGATTCTAGTAATGATCTGC-ATTCATTTTGTGATTAGGCAC
64 CGTGCCTCAAATAAGACAAACATGGATTCTAATAATGATCTTCTATTCATTTTGTGATTAGGCAC
148581 TATAAACACATTCTCCCCCATTAGGATAAAT
129 TATAAACACATTCT-CCCCATTAGGATAAAT
* * * * * * *
148612 GATATTGATGATTTT-CTTTGCATGGAAA--TCTTTTCTTTC-CCTATTTTTCTTAAAATCAAAG
1 GATATTGATG-TTTTGGTTTGCA-AGAAAGGCCTTTT-TTCCACCAATTTTT-GTAAAGTCAAAG
** * * * * ** *
148673 TTTAT-CTCTTAAATAAGACAAGCATCGATTCTCATAACCA-CTCTCTATT-ATTTTCATGATT-
62 TTCGTGC-CTCAAATAAGACAAACATGGATTCTAATAATGATCT-TCTATTCATTTT-GTGATTA
* * * * * *
148734 GGGAATGAAAAAACGCATTC-CCTTCATTAGGATACAT
124 GGCACT--ATAAACACATTCTCC-CCATTAGGATAAAT
* * * *
148771 GATATTGGTGCTTTGGTGTTGC-AGAAAAGCTTTTCTTTCCACC-ATTTTTGATAGAA-TCAAAG
1 GATATTGATGTTTTGGT-TTGCAAGAAAGGCCTTT-TTTCCACCAATTTTTG-TA-AAGTCAAAG
* * * * * * * * * * ***
148833 TTTG-GATCTTAAATAAGATAAGCATGAATAC-ACATACTAATC-CCTATTC-TTCCCTAGATTA
62 TTCGTG-CCTCAAATAAGACAAACATGGATTCTA-ATAATGATCTTCTATTCATTTTGT-GATTA
* * * * * * * *
148894 GGCCCCATAAACATAGTCTTCTCAATAGGATACAT
124 GGCACTATAAACACATTCTCCCCATTAGGATAAAT
*
148929 GATATTGATGTTTTGGTTTGGCAAGAAAGGCCTTTTTTCCTACCAATTTTTGTAAAGTCTAAGTT
1 GATATTGATGTTTTGGTTT-GCAAGAAAGGCCTTTTTTCC-ACCAATTTTTGTAAAGTCAAAGTT
* * *
148994 CGTGCCTCAATTGAGACAAATATGGATTCTAATAATGATCTTC-ATTCATTTTGTGATTAGGCAC
64 CGTGCCTCAAATAAGACAAACATGGATTCTAATAATGATCTTCTATTCATTTTGTGATTAGGCAC
*
149058 TATAAACACATTCTCCCCATTTGGATAAAT
129 TATAAACACATTCTCCCCATTAGGATAAAT
149088 GATATTGA
1 GATATTGA
149096 GGATTTTCTT
Statistics
Matches: 357, Mismatches: 90, Indels: 74
0.69 0.17 0.14
Matches are distributed among these distances:
157 17 0.05
158 110 0.31
159 144 0.40
160 80 0.22
161 6 0.02
ACGTcount: A:0.30, C:0.17, G:0.15, T:0.37
Consensus pattern (158 bp):
GATATTGATGTTTTGGTTTGCAAGAAAGGCCTTTTTTCCACCAATTTTTGTAAAGTCAAAGTTCG
TGCCTCAAATAAGACAAACATGGATTCTAATAATGATCTTCTATTCATTTTGTGATTAGGCACTA
TAAACACATTCTCCCCATTAGGATAAAT
Found at i:150098 original size:476 final size:469
Alignment explanation
Indices: 147768--150921 Score: 3184
Period size: 476 Copynumber: 6.6 Consensus size: 469
147758 TCTCCTCAAC
* *
147768 ATTTTCAGGATTGGGAACCAAAAAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGG
1 ATTTTCACGATTGGGAACC-TAAAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGG
* * * *
147833 TGTCT-CAAAAAAAGCTTTTCTTTCAACTGTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGA
65 TGT-TGCAAGAAAAGCTTTTCTTTCTACCGTTTTGATAGAATCAAAG-TTGGCTCTTAAATAAGA
* * * * * *
147897 CAAACATAAATACTCTTACTAATCCCCATCCTTTTCGGGATTAGGCACCATAAACAAAGTCTTCT
128 CAAACATGAATAGTCATACTAAT-CCCATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCT
* * * *
147962 CATAGGGATACATGCTATTGATGCTTTCGTTTCTCAAGAAAGGCTTTTTTCCCACTAATTTTTGT
192 CATAAGG----ATGCTATTGATGCTTTGGTTTCGCAAGAAAGGCTTTTTTCCCACCAATTTTTGT
** * * * *
148027 AAAGTCTAAGTTTATGCCTTAAATGAGACAAACATGAATTCTGGTAATGATCTTCATTCATTTTT
253 AAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTG
* *
148092 TGATTAGGCACTATAAACATATTCTCCTCATTAGGATAAATGATATTGATGATTCTT-TTTTGCG
318 TGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGATATTGATGATT-TTCTTTTGCA
* * * *
148156 TGAAAATCTTTCCTTTTCCTTATTTTCCTTAAAATCAAAGTTCATAC-CATTAAATAGGACAAGC
382 TGAAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCAT-CTC-TTAAATAAGACAAGC
* ** * *
148220 ATCAATTCTCGCAACAATCTCTATT
445 ATCGATTCTCATAACAGTCTCCATT
** * * * * **
148245 ATTTTCTGGATTGGGAACCTAAAACACATTCCCTTCTTTAGGTTACATAACATGGACACTTTGGT
1 ATTTTCACGATTGGGAACCTAAAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGT
* * *
148310 -TTCGCAAGAAAAGCTTTTCTTTCTACTGTTTTGATAGAATCAATGGTTGGCTCTTAAATAACAC
66 GTT-GCAAGAAAAGCTTTTCTTTCTACCGTTTTGATAGAATCAA-AGTTGGCTCTTAAATAAGAC
* *
148374 GAAA-ATGAATAGTCAAAACTAATCACCTATTTTTTTCAGGATTAGGCACCATAAACATAGTCTT
129 -AAACATGAATAGTC-ATACTAATC-CC-ATTCTTTTCAGGATTAGGCACCATAAACATAGTCTT
* * * * *
148438 CTCATTTAGATATGCGATATTGATGTTTTGGTTTCGCAAAGAAAGGCTTTCTT-CCACTAATTTT
190 CTCA-TAAG-GATGC--TATTGATGCTTTGGTTTCGC-AAGAAAGGCTTTTTTCCCACCAATTTT
* * * *
148502 TGTTAAGTCAAAGTTCGTGCCTCAAATGAGACAAATATGGATTCTAGTAATGATCTGCATTCATT
250 TGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATT
*
148567 TTGTGATTAGGCACTATAAACACATTCTCCCCCATTAGGATAAATGATATTGATGATTTTC-TTT
315 TTGTGATTAGGCACTATAAACACATTCT-CCTCATTAGGATAAATGATATTGATGATTTTCTTTT
* * *
148631 GCATGGAAATCTTTTCTTT-CCCTATTTTTCTTAAAATCAAAGTTTATCTCTTAAATAAGACAAG
379 GCATGAAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCTCTTAAATAAGACAAG
* *
148695 CATCGATTCTCATAACCACTCTCTATT
444 CATCGATTCTCATAA-CAGTCTCCATT
* *** * * *
148722 ATTTTCATGATTGGGAATGAAAAAACGCATTCCCTTCATTAGGATACATGATATTGGTGCTTTGG
1 ATTTTCACGATTGGGAA-CCTAAAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGG
* * *
148787 TGTTGC-AGAAAAGCTTTTCTTTCCACCATTTTTGATAGAATCAAAGTTTGGATCTTAAATAAGA
65 TGTTGCAAGAAAAGCTTTTCTTTCTACC-GTTTTGATAGAATCAAAG-TTGGCTCTTAAATAAGA
* * ** ** *
148851 TAAGCATGAATACACATACTAATCCCTATTCTTCCCTA-GATTAGGCCCCATAAACATAGTCTTC
128 CAAACATGAATAGTCATACTAATCCC-ATTCTTTTC-AGGATTAGGCACCATAAACATAGTCTTC
* * * *
148915 TCA-ATAGGATACATGATATTGATGTTTTGGTTTGGCAAGAAAGGCCTTTTTTCCTACCAATTTT
191 TCATA-AGG----ATGCTATTGATGCTTTGGTTTCGCAAGAAAGG-CTTTTTTCCCACCAATTTT
* * *
148979 TGTAAAGTCTAAGTTCGTGCCTCAATTGAGACAAATATGGATTCTAATAATGATCTTCATTCATT
250 TGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATT
* * *
149044 TTGTGATTAGGCACTATAAACACATTCTCCCCATTTGGATAAATGATATTGAGGATTTTCTTTTG
315 TTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTG
* * ** * *
149109 CAT-AGAAATCTTTTCTTTCCCCTATTTTCCTTAGAATCAAA-TTTTTCTTTTAAATAAGACAAA
380 CATGA-AAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCTCTTAAATAAGACAAG
* *
149172 CATCGATTCTCGTAACAGTCTCTATT
444 CATCGATTCTCATAACAGTCTCCATT
** * * *
149198 ATTTTCTTGA-TGGGAACC-AAAATACCATT-CGTTCGTTAGGATACATGACATTGATGCATTTG
1 ATTTTCACGATTGGGAACCTAAAACA-CATTCCCTTCATTAGGATACATGACATTGATGC-TTTG
* * * * * *
149260 GTGTCGCAAGAATAGCTTTTCTTTCTACCGTTTTTGATAGAATCAAAGTTTGCCTATTACATAGG
64 GTGTTGCAAGAAAAGCTTTTCTTTCTACCG-TTTTGATAGAATCAAAG-TTGGCTCTTAAATAAG
* * * * * * *
149325 ACAAATATGAATAGTCATACCAATCCCCATTCTTTTCAAGATCAGGCATCGTAAACATAGTATTC
127 ACAAACATGAATAGTCATACTAAT-CCCATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTC
* * * *
149390 TCATAAGGATACACGATATTGATGCTTTGG-TTCACAAGAAAGGCTTTCTTGCCACCAA-TTTTG
191 TCATAAGGAT----GCTATTGATGCTTTGGTTTCGCAAGAAAGGCTTTTTTCCCACCAATTTTTG
* * * *
149453 TGAAGTCTAAGTTTTGTGCCTCAAATGAGACAAAATATGGATTTTAGTAATGATCTTCATTCATT
252 TAAAGTCTAAG-TTCGTGCCTCAAATGAGAC-AAACATGGATTCTAGTAATGATCTTCATTCATT
* * * * *
149518 TTGTGATTAGGCACTATAAACACATTCTCATCATTAGGAGGATAAAAGATGTTAATGATTTTCCT
315 TTGTGATTAGGCACTATAAACACATTCTCCTCATT---AGGATAAATGATATTGATGATTTTCTT
* * *
149583 TTG-ATGGAAAT-TTGTT-TTCTTCTCTATTATTCACTTAAAATCAAAGTTCATCTCTTAAATAA
377 TTGCATGAAAATCTT-TTCTT-TGCCCTATT-TTC-CTTAAAATCAAAGTTCATCTCTTAAATAA
*
149645 GATAAGCATCGATTCTCATAACAGTCTCCATT
438 GACAAGCATCGATTCTCATAACAGTCTCCATT
* * * * * *
149677 ATTTTCACAATTAGGAACCTAAAACACATTCCCTTCTTTAGGTTACATAACATTGATGCTTTGGC
1 ATTTTCACGATTGGGAACCTAAAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGT
* * * * *
149742 GTTGCAAGAAAAGCTTTTTCTTTCCACCATTTTAGATA-AATCAAAGTCGGCCTCGTAAATAGGA
66 GTTGCAAGAAAAGC-TTTTCTTTCTACCGTTTT-GATAGAATCAAAGTTGG-CTCTTAAATAAGA
* * * * * *
149806 TAAACATGAATAGTCCTACT-ATCCTCATTCTTTTTAGGTTTAGGCACTATAAGCATAGTCTTCT
128 CAAACATGAATAGTCATACTAATCC-CATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCT
* * * *
149870 CATAAGG-TGCT-TTGGTGCTTTGGTTTCACAAGAAAGGATTTTTTTTTCCCAGCAATTTTTGTA
192 CATAAGGATGCTATTGATGCTTTGGTTTCGCAAGAAAGG---CTTTTTTCCCACCAATTTTTGTA
** * *
149933 AAGTCTAAGTTCGTGCCTCAAACAAGACAAACATGGATTCTAGTAGTGATCTTCCTTCATTTTGT
254 AAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGT
* * * * * *
149998 GATTAGGCACTATAAACACACTTCTCATTTATTAGGCTAAATGATTTTTTATGATTTTGTTTTGC
319 GATTAGGCACTATAAACACA-TTCTC-CTCATTAGGATAAATGA-TATTGATGATTTTCTTTTGC
*
150063 ATGCAAAATCTTTTCATTGCCCTATTTTCCTTAAAATCAAAG-T-ATAC-CTTAAATAAGACAAG
381 ATG-AAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCAT-CTCTTAAATAAGACAAG
* * *
150125 CATCAATGCTCGTAACAGGTCTCCA-T
444 CATCGATTCTCATAACA-GTCTCCATT
* *
150151 ATTTTC-CGGCTTGGGGAACC-AAAACACATTCCC-TCATTAGAATACATGACATTGATGCTTTG
1 ATTTTCAC-GATT-GGGAACCTAAAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTG
**** * *
150213 GTGCCATAAGAAAAGCTTTTC-TTCTATGCCGTTTTCCATAGAATCAAAGTTTGTCTCTTAAAT-
64 GTGTTGCAAGAAAAGCTTTTCTTTCTA--CCGTTTT-GATAGAATCAAAG-TTGGCTCTTAAATA
* * * * * *
150276 AGAACAAACAAGAATA-ACGATACTAATCACCATTC-TTTCAGGACCTAGGCACCTTAAATATAA
125 AG-ACAAACATGAATAGTC-ATACTAATC-CCATTCTTTTCAGGA-TTAGGCACCATAAACATAG
* * * * * *
150339 TCTTCTCATTAGGATACACGATTATTAATGTTTTGGTTTCGCAAGAAAGGCATTTTCCCCACCAA
186 TCTTCTCATAAGGAT----G-CTATTGATGCTTTGGTTTCGCAAGAAAGGCTTTTTTCCCACCAA
* * **
150404 TTTTTGTAAAGTCTAAGTTCTTTCCTCAAACAAGACAAACATGGATTCTAGTAATGATCTTCATT
246 TTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATT
* * * *
150469 AATTTTGTGATTAGGCACTATAAACCCATTCTCCTCAATAGGATAAATGATATTGATGATTTACT
311 CATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGATATTGATGATTTTCT
* * * * *
150534 TTTGCATGGAAATCTATTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAAAAAAAA
376 TTTGCATGAAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCTCTT-AAATAAGA
** *
150599 CAAGCATCGACGCTCATAACAGTCTACATT
440 CAAGCATCGATTCTCATAACAGTCTCCATT
* * * *
150629 CTTTTTAGGATTGGGAACCTAAAACACATTTCCTTCATTAGGATACATGACATTGATGCTTTGGT
1 ATTTTCACGATTGGGAACCTAAAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGT
* * * * * *
150694 GTCGTAAGGAAAGCTTTTCTTTCTGCCGTTTTTGATAGAATCAGAGTTTGTCTCTT-AATAAGAC
66 GTTGCAAGAAAAGCTTTTCTTTCTACCG-TTTTGATAGAATCAAAG-TTGGCTCTTAAATAAGAC
* * * ** ***
150758 AAATATGAATAGT-ATACTAATCCCAATTCTTTTCAAGAGTAGGTGCTGCAAACATAGTCTTCTC
129 AAACATGAATAGTCATACTAATCCC-ATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTC
** *
150822 A-AAGGATGCATGATATTGATGCTTTGGTTTCGCAAGAAAGGCTTTCCTCTCACCAATTTTTGTA
193 ATAAGGATGC----TATTGATGCTTTGGTTTCGCAAGAAAGGCTTTTTTCCCACCAATTTTTGTA
* *
150886 AAGTCTATA-TTCGTGTCTTAAATGAGACAAACATGG
254 AAGTCTA-AGTTCGTGCCTCAAATGAGACAAACATGG
150922 TGATGACAAC
Statistics
Matches: 2236, Mismatches: 329, Indels: 227
0.80 0.12 0.08
Matches are distributed among these distances:
471 7 0.00
472 20 0.01
473 116 0.05
474 267 0.12
475 238 0.11
476 397 0.18
477 379 0.17
478 387 0.17
479 286 0.13
480 71 0.03
481 46 0.02
482 22 0.01
ACGTcount: A:0.31, C:0.18, G:0.15, T:0.36
Consensus pattern (469 bp):
ATTTTCACGATTGGGAACCTAAAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGT
GTTGCAAGAAAAGCTTTTCTTTCTACCGTTTTGATAGAATCAAAGTTGGCTCTTAAATAAGACAA
ACATGAATAGTCATACTAATCCCATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATA
AGGATGCTATTGATGCTTTGGTTTCGCAAGAAAGGCTTTTTTCCCACCAATTTTTGTAAAGTCTA
AGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGG
CACTATAAACACATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGAAAATCT
TTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCTCTTAAATAAGACAAGCATCGATTCTCA
TAACAGTCTCCATT
Found at i:150347 original size:954 final size:935
Alignment explanation
Indices: 147768--150921 Score: 3427
Period size: 954 Copynumber: 3.3 Consensus size: 935
147758 TCTCCTCAAC
* *
147768 ATTTTCAGGATTGGGAACCAAAAAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGG
1 ATTTTCACGATTGGGAACC-TAAAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGG
* * ** *
147833 TGTCT-CAAAAAAAGCTTTTCTTTCAACTGTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGA
65 TGT-TGCAAGAAAAGCTTTTCTTTCCACCATTTTGATAGAATCAAAG-TTGGCTCTTAAATAAGA
* * * * ** *
147897 CAAACATAAATACTCTTACTAATCCCCATCCTTTTCGGGATTAGGCACCATAAACAAAGTCTTCT
128 TAAACATGAATACTCATACTAAT-CCCATTCTTTTTAGGATTAGGCACCATAAACATAGTCTTCT
* * *
147962 CATAGGGATACATGCTATTGATGCTTTCGTTTCTCAAGAAAGGCTTTTTTCCCACTAATTTTTGT
192 CATAAGG----ATGCTATTGATGCTTTGGTTTCACAAGAAAGGCTTTTTTCCCAC-AATTTTTGT
** * * * *
148027 AAAGTCTAAGTTTATGCCTTAAATGAGACAAACATGAATTCTGGTAATGATCTTCATTCATTTTT
252 AAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTG
* *
148092 TGATTAGGCACTATAAACATATTCTCCTCATTAGGATAAATGATATTGATGATTCTTTTTTGCGT
317 TGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGATATTGATGATT-TTTTTTGCAT
* * * *
148157 GAAAATCTTTCCTTTTCCTTATTTTCCTTAAAATCAAAGTTCATACCATTAAATAGGACAAGCAT
381 GAAAATCTTTTCTTTCCCCTATTTTCCTTAAAATCAAAG-T-ATACC-TTAAATAAGACAAGCAT
* * *
148222 CAATTCTCGCAACAATCTCTATTATTTTCTGGATTGGGAACCTAAAACACATTCCCTTCTTTAGG
443 CAATTCTCGTAACAGTCTCTATTATTTTCTGG-TTGGGAACC-AAAACACATTCCC-TCATTAGG
* * * ** * *
148287 TTACATAACATGGACACTTTGGTTTCGCAAGAAAAGCTTTTCTTTCTACTGTTTTGATAGAATCA
505 ATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCTACCGTTTTGATAGAATCA
* * * * * *
148352 ATGGTTGGCTCTTAAATA-ACACGAAAATGAATAGTCAAAACTAATCACCTATTTTTTTCAGGAT
570 AAGTTTGCCTCTTAAATAGA-AC-AAAATGAATAGTC-ATACTAATCACC-A-TTCTTTCAGGAC
**
148416 TAGGCACCATAAACATAGTCTTCTCATTTA-GATATGCGATATTGATGTTTTGGTTTCGCAAAGA
630 TAGGCACCATAAACATAGTCTTCTCA-TTAGGATACACGATATTGATGTTTTGGTTTCGC-AAGA
* * * *
148480 AAGGCTTTCTTCCACTAATTTTTGTTAAGTCAAAG-TTCGTGCCTCAAATGAGACAAATATGGAT
693 AAGGCTTTCTTCCACCAATTTTTGTAAAGTCTAAGTTTTGTGCCTCAAATGAGACAAATATGGAT
* *
148544 TCTAGTAATGATCTGCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCCCCATT-AGGAT
758 TCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCT-CCTCATTAAGGAT
* *
148608 AAATGATATTGATGATTTT-CTTTGCATGGAAA-TCTTTTCTTTCCCTATTTTTCTTAAAATCAA
822 AAATGATATTGATGATTTTCCTTTGCATGGAAATTATTTTC-TTCCCTATTTTCCTTAAAATCAA
* * *
148671 AGTTTATCTCTTAAATAAGACAAGCATCGATTCTCATAACCACTCTCTATT
886 AGTTCATCTCTTAAATAAGACAAGCATCGATTCTCATAA-CAGTCTCCATT
* *** * * *
148722 ATTTTCATGATTGGGAATGAAAAAACGCATTCCCTTCATTAGGATACATGATATTGGTGCTTTGG
1 ATTTTCACGATTGGGAA-CCTAAAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGG
*
148787 TGTTGC-AGAAAAGCTTTTCTTTCCACCATTTTTGATAGAATCAAAGTTTGGATCTTAAATAAGA
65 TGTTGCAAGAAAAGCTTTTCTTTCCACCA-TTTTGATAGAATCAAAG-TTGGCTCTTAAATAAGA
* * ** *
148851 TAAGCATGAATACACATACTAATCCCTATTCTTCCCTA-GATTAGGCCCCATAAACATAGTCTTC
128 TAAACATGAATACTCATACTAATCCC-ATTCTT-TTTAGGATTAGGCACCATAAACATAGTCTTC
* * ** *
148915 TCA-ATAGGATACATGATATTGATGTTTTGGTTTGGCAAGAAAGGCCTTTTTTCCTACCAATTTT
191 TCATA-AGG----ATGCTATTGATGCTTTGGTTTCACAAGAAAGG-CTTTTTTCCCA-CAATTTT
* * *
148979 TGTAAAGTCTAAGTTCGTGCCTCAATTGAGACAAATATGGATTCTAATAATGATCTTCATTCATT
249 TGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATT
* * *
149044 TTGTGATTAGGCACTATAAACACATTCTCCCCATTTGGATAAATGATATTGAGGATTTTCTTTTG
314 TTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGATATTGATGATTTT-TTTTG
* * * * * *
149109 CAT-AGAAATCTTTTCTTTCCCCTATTTTCCTTAGAATCAAATTTTTCTTTTAAATAAGACAAAC
378 CATGA-AAATCTTTTCTTTCCCCTATTTTCCTTAAAATCAAAGTATAC-CTTAAATAAGACAAGC
* * * * ** *
149173 ATCGATTCTCGTAACAGTCTCTATTATTTTCTTGATGGGAACCAAAATACCATTCGTTCGTTAGG
441 ATCAATTCTCGTAACAGTCTCTATTATTTTCTGGTTGGGAACCAAAACA-CATTCCCTCATTAGG
*
149238 ATACATGACATTGATGCATTTGGTGTCGCAAGAATAGCTTTTCTTTCTACCGTTTTTGATAGAAT
505 ATACATGACATTGATGC-TTTGGTGTCGCAAGAAAAGCTTTTCTTTCTACCG-TTTTGATAGAAT
* * * * * *
149303 CAAAGTTTGCCTATTACATAGGACAAATATGAATAGTCATACCAATCCCCATTCTTTTCAAGA-T
568 CAAAGTTTGCCTCTTAAATAGAACAAA-ATGAATAGTCATACTAATCACCATTC-TTTCAGGACT
* * * * * *
149367 CAGGCATCGTAAACATAGTATTCTCATAAGGATACACGATATTGATGCTTTGG-TTCACAAGAAA
631 -AGGCACCATAAACATAGTCTTCTCATTAGGATACACGATATTGATGTTTTGGTTTCGCAAGAAA
*
149431 GGCTTTCTTGCCACCAA-TTTTGTGAAGTCTAAGTTTTGTGCCTCAAATGAGACAAAATATGGAT
695 GGCTTTCTT-CCACCAATTTTTGTAAAGTCTAAGTTTTGTGCCTCAAATGAGAC-AAATATGGAT
* *
149495 TTTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCATCATTAGGAGGA
758 TCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTA--AGGA
* * * * *
149560 TAAAAGATGTTAATGATTTTCCTTTG-ATGGAAATTTGTTTTCTTCTCTATTATTCACTTAAAAT
821 TAAATGATATTGATGATTTTCCTTTGCATGGAAA-TTATTTTCTTCCCTATT-TTC-CTTAAAAT
*
149624 CAAAGTTCATCTCTTAAATAAGATAAGCATCGATTCTCATAACAGTCTCCATT
883 CAAAGTTCATCTCTTAAATAAGACAAGCATCGATTCTCATAACAGTCTCCATT
* * * * * *
149677 ATTTTCACAATTAGGAACCTAAAACACATTCCCTTCTTTAGGTTACATAACATTGATGCTTTGGC
1 ATTTTCACGATTGGGAACCTAAAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGT
* * *
149742 GTTGCAAGAAAAGCTTTTTCTTTCCACCATTTTAGATA-AATCAAAGTCGGCCTCGTAAATAGGA
66 GTTGCAAGAAAAGC-TTTTCTTTCCACCATTTT-GATAGAATCAAAGTTGG-CTCTTAAATAAGA
* * * * *
149806 TAAACATGAATAGTCCTACT-ATCCTCATTCTTTTTAGGTTTAGGCACTATAAGCATAGTCTTCT
128 TAAACATGAATACTCATACTAATCC-CATTCTTTTTAGGATTAGGCACCATAAACATAGTCTTCT
* *
149870 CATAAGG-TGCT-TTGGTGCTTTGGTTTCACAAGAAAGGATTTTTTTTTCCCAGCAATTTTTGTA
192 CATAAGGATGCTATTGATGCTTTGGTTTCACAAGAAAGG---CTTTTTTCCCA-CAATTTTTGTA
** * *
149933 AAGTCTAAGTTCGTGCCTCAAACAAGACAAACATGGATTCTAGTAGTGATCTTCCTTCATTTTGT
253 AAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGT
* * * * *
149998 GATTAGGCACTATAAACACACTTCTCATTTATTAGGCTAAATGATTTTTTATGATTTTGTTTTGC
318 GATTAGGCACTATAAACACA-TTCTC-CTCATTAGGATAAATGA-TATTGATGATTTT-TTTTGC
* *
150063 ATGCAAAATCTTTTCATTGCCCTATTTTCCTTAAAATCAAAGTATACCTTAAATAAGACAAGCAT
379 ATG-AAAATCTTTTCTTTCCCCTATTTTCCTTAAAATCAAAGTATACCTTAAATAAGACAAGCAT
* * * *
150128 CAATGCTCGTAACAGGTCTCCA-TATTTTCCGGCTTGGGGAACCAAAACACATTCCCTCATTAGA
443 CAATTCTCGTAACA-GTCTCTATTATTTTCTGG-TT-GGGAACCAAAACACATTCCCTCATTAGG
* ** *
150192 ATACATGACATTGATGCTTTGGTGCCATAAGAAAAGCTTTTC-TTCTATGCCGTTTTCCATAGAA
505 ATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCTA--CCGTTTT-GATAGAA
* * *
150256 TCAAAGTTTGTCTCTTAAATAGAACAAACAAGAATA-ACGATACTAATCACCATTCTTTCAGGAC
567 TCAAAGTTTGCCTCTTAAATAGAACAAA-ATGAATAGTC-ATACTAATCACCATTCTTTCAGGA-
* * * *
150320 CTAGGCACCTTAAATATAATCTTCTCATTAGGATACACGATTATTAATGTTTTGGTTTCGCAAGA
629 CTAGGCACCATAAACATAGTCTTCTCATTAGGATACACGA-TATTGATGTTTTGGTTTCGCAAGA
* ** *
150385 AAGGCATTT-TCCCCACCAATTTTTGTAAAGTCTAAGTTCTT-T-CCTCAAACAAGACAAACATG
693 AAGGC-TTTCT-TCCACCAATTTTTGTAAAGTCTAAGTT-TTGTGCCTCAAATGAGACAAATATG
* * *
150447 GATTCTAGTAATGATCTTCATTAATTTTGTGATTAGGCACTATAAACCCATTCTCCTCAAT-AGG
755 GATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAAGG
* * *
150511 ATAAATGATATTGATGATTTACTTTTGCATGGAAATCTATTCTT-TGCCCTATTTTCCTTAAAAT
820 ATAAATGATATTGATGATTTTCCTTTGCATGGAAAT-TATT-TTCTTCCCTATTTTCCTTAAAAT
* * * ** *
150575 CAAAGTTCATCCCTTAAAAAAAAACAAGCATCGACGCTCATAACAGTCTACATT
883 CAAAGTTCATCTCTT-AAATAAGACAAGCATCGATTCTCATAACAGTCTCCATT
* * * *
150629 CTTTTTAGGATTGGGAACCTAAAACACATTTCCTTCATTAGGATACATGACATTGATGCTTTGGT
1 ATTTTCACGATTGGGAACCTAAAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGT
* * * ** * * * *
150694 GTCGTAAGGAAAGCTTTTCTTTCTGCCGTTTTTGATAGAATCAGAGTTTGTCTCTT-AATAAGAC
66 GTTGCAAGAAAAGCTTTTCTTTCCACC-ATTTTGATAGAATCAAAG-TTGGCTCTTAAATAAGAT
* * * * * ** ***
150758 AAATATGAATAGT-ATACTAATCCCAATTCTTTTCAAGAGTAGGTGCTGCAAACATAGTCTTCTC
129 AAACATGAATACTCATACTAATCCC-ATTCTTTTTAGGATTAGGCACCATAAACATAGTCTTCTC
* ** *
150822 A-AAGGATGCATGATATTGATGCTTTGGTTTCGCAAGAAAGGCTTTCCTCTCACCAATTTTTGTA
193 ATAAGGATGC----TATTGATGCTTTGGTTTCACAAGAAAGGCTTTTTTCCCA-CAATTTTTGTA
* *
150886 AAGTCTATA-TTCGTGTCTTAAATGAGACAAACATGG
253 AAGTCTA-AGTTCGTGCCTCAAATGAGACAAACATGG
150922 TGATGACAAC
Statistics
Matches: 1852, Mismatches: 273, Indels: 151
0.81 0.12 0.07
Matches are distributed among these distances:
948 22 0.01
949 32 0.02
950 145 0.08
951 231 0.12
952 215 0.12
953 291 0.16
954 438 0.24
955 332 0.18
956 123 0.07
957 21 0.01
958 2 0.00
ACGTcount: A:0.31, C:0.18, G:0.15, T:0.36
Consensus pattern (935 bp):
ATTTTCACGATTGGGAACCTAAAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGT
GTTGCAAGAAAAGCTTTTCTTTCCACCATTTTGATAGAATCAAAGTTGGCTCTTAAATAAGATAA
ACATGAATACTCATACTAATCCCATTCTTTTTAGGATTAGGCACCATAAACATAGTCTTCTCATA
AGGATGCTATTGATGCTTTGGTTTCACAAGAAAGGCTTTTTTCCCACAATTTTTGTAAAGTCTAA
GTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGC
ACTATAAACACATTCTCCTCATTAGGATAAATGATATTGATGATTTTTTTTGCATGAAAATCTTT
TCTTTCCCCTATTTTCCTTAAAATCAAAGTATACCTTAAATAAGACAAGCATCAATTCTCGTAAC
AGTCTCTATTATTTTCTGGTTGGGAACCAAAACACATTCCCTCATTAGGATACATGACATTGATG
CTTTGGTGTCGCAAGAAAAGCTTTTCTTTCTACCGTTTTGATAGAATCAAAGTTTGCCTCTTAAA
TAGAACAAAATGAATAGTCATACTAATCACCATTCTTTCAGGACTAGGCACCATAAACATAGTCT
TCTCATTAGGATACACGATATTGATGTTTTGGTTTCGCAAGAAAGGCTTTCTTCCACCAATTTTT
GTAAAGTCTAAGTTTTGTGCCTCAAATGAGACAAATATGGATTCTAGTAATGATCTTCATTCATT
TTGTGATTAGGCACTATAAACACATTCTCCTCATTAAGGATAAATGATATTGATGATTTTCCTTT
GCATGGAAATTATTTTCTTCCCTATTTTCCTTAAAATCAAAGTTCATCTCTTAAATAAGACAAGC
ATCGATTCTCATAACAGTCTCCATT
Done.