Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold222
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 358842
ACGTcount: A:0.35, C:0.15, G:0.16, T:0.34
File 3 of 3
Found at i:316326 original size:13 final size:13
Alignment explanation
Indices: 316308--316359 Score: 50
Period size: 13 Copynumber: 3.5 Consensus size: 13
316298 AGCTTCATAG
316308 CGATACATTGTAT
1 CGATACATTGTAT
316321 CGATACAAAACTTATGTAT
1 CGATAC---A-TT--GTAT
316340 CGATACATTGTAT
1 CGATACATTGTAT
316353 CGATACA
1 CGATACA
316360 AATCGTTGAA
Statistics
Matches: 33, Mismatches: 0, Indels: 12
0.73 0.00 0.27
Matches are distributed among these distances:
13 17 0.52
15 2 0.06
16 2 0.06
17 2 0.06
19 10 0.30
ACGTcount: A:0.37, C:0.17, G:0.13, T:0.33
Consensus pattern (13 bp):
CGATACATTGTAT
Found at i:316671 original size:3 final size:3
Alignment explanation
Indices: 316665--316704 Score: 80
Period size: 3 Copynumber: 13.3 Consensus size: 3
316655 GTTGTTGTTG
316665 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T
316705 GGTGAGTAAA
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 37 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
TTA
Found at i:316820 original size:18 final size:20
Alignment explanation
Indices: 316773--316820 Score: 55
Period size: 21 Copynumber: 2.5 Consensus size: 20
316763 TTTTATTTTA
316773 TAAATTTTAATTATTATTAAT
1 TAAATTTTAATTATTA-TAAT
* *
316794 AAAAATTTAATTA-TA-AAT
1 TAAATTTTAATTATTATAAT
316812 TAAATTTTA
1 TAAATTTTA
316821 TTAAATAATA
Statistics
Matches: 23, Mismatches: 4, Indels: 3
0.77 0.13 0.10
Matches are distributed among these distances:
18 10 0.43
20 2 0.09
21 11 0.48
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (20 bp):
TAAATTTTAATTATTATAAT
Found at i:317221 original size:6 final size:6
Alignment explanation
Indices: 317207--317237 Score: 53
Period size: 6 Copynumber: 5.2 Consensus size: 6
317197 AAATAAATTT
*
317207 TTAATA TTAAAA TTAAAA TTAAAA TTAAAA T
1 TTAAAA TTAAAA TTAAAA TTAAAA TTAAAA T
317238 AATTAATTAA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
6 24 1.00
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (6 bp):
TTAAAA
Found at i:318438 original size:12 final size:12
Alignment explanation
Indices: 318409--318455 Score: 58
Period size: 12 Copynumber: 3.9 Consensus size: 12
318399 TCTATGCCAC
*
318409 ATATATTTATGT
1 ATATATTTATAT
*
318421 AAATATTTATAT
1 ATATATTTATAT
*
318433 ATATATATATAT
1 ATATATTTATAT
*
318445 ATATATGTATA
1 ATATATTTATA
318456 GATGATACGA
Statistics
Matches: 30, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
12 30 1.00
ACGTcount: A:0.45, C:0.00, G:0.04, T:0.51
Consensus pattern (12 bp):
ATATATTTATAT
Found at i:318488 original size:10 final size:10
Alignment explanation
Indices: 318467--318530 Score: 51
Period size: 10 Copynumber: 6.4 Consensus size: 10
318457 ATGATACGAT
*
318467 TATATTAATA
1 TATATAAATA
*
318477 TATTTAAATA
1 TATATAAATA
318487 TATATAAATA
1 TATATAAATA
318497 -A-ATAAATAA
1 TATATAAAT-A
* *
318506 TATGTAAAATT
1 TATAT-AAATA
*
318517 TATATAAATT
1 TATATAAATA
318527 TATA
1 TATA
318531 CTATTTTAAA
Statistics
Matches: 44, Mismatches: 6, Indels: 8
0.76 0.10 0.14
Matches are distributed among these distances:
8 6 0.14
9 2 0.05
10 27 0.61
11 5 0.11
12 4 0.09
ACGTcount: A:0.55, C:0.00, G:0.02, T:0.44
Consensus pattern (10 bp):
TATATAAATA
Found at i:318564 original size:11 final size:12
Alignment explanation
Indices: 318550--318732 Score: 66
Period size: 12 Copynumber: 15.5 Consensus size: 12
318540 ATATATAAAA
318550 AATA-AAAATAT
1 AATATAAAATAT
*
318561 AATATAAAAAAT
1 AATATAAAATAT
318573 AAT-TAAAATAT
1 AATATAAAATAT
318584 AATATAAAA-AT
1 AATATAAAATAT
** *
318595 AA-ATATGATACG
1 AATATAAAATA-T
318607 AATATAAAA-A-
1 AATATAAAATAT
*
318617 CATAT-AAATAT
1 AATATAAAATAT
*
318628 ATATGTAAAATAT
1 A-ATATAAAATAT
* **
318641 TATATATATTTAT
1 AATATA-AAATAT
**
318654 AATATTTTAA-AT
1 AATA-TAAAATAT
*
318666 AAT-TAAAAAAT
1 AATATAAAATAT
*
318677 AA-ATATAATAT
1 AATATAAAATAT
318688 GAATATAAAA-A-
1 -AATATAAAATAT
*
318699 CATATAAATATAT
1 AATATAAA-ATAT
318712 ATATATGTAAAATAT
1 A-ATA--TAAAATAT
*
318727 TATATA
1 AATATA
318733 TATTTATAAT
Statistics
Matches: 124, Mismatches: 27, Indels: 41
0.65 0.14 0.21
Matches are distributed among these distances:
9 3 0.02
10 19 0.15
11 30 0.24
12 35 0.28
13 22 0.18
14 7 0.06
15 4 0.03
16 4 0.03
ACGTcount: A:0.61, C:0.02, G:0.03, T:0.35
Consensus pattern (12 bp):
AATATAAAATAT
Found at i:318584 original size:23 final size:22
Alignment explanation
Indices: 318539--318599 Score: 86
Period size: 23 Copynumber: 2.7 Consensus size: 22
318529 TACTATTTTA
*
318539 AATATATAAAAAATAAAAATAT
1 AATATAAAAAAAATAAAAATAT
*
318561 AATATAAAAAATAATTAAAATAT
1 AATATAAAAAA-AATAAAAATAT
318584 AATATAAAAATAAATA
1 AATATAAAAA-AAATA
318600 TGATACGAAT
Statistics
Matches: 34, Mismatches: 3, Indels: 3
0.85 0.08 0.08
Matches are distributed among these distances:
22 10 0.29
23 23 0.68
24 1 0.03
ACGTcount: A:0.72, C:0.00, G:0.00, T:0.28
Consensus pattern (22 bp):
AATATAAAAAAAATAAAAATAT
Found at i:318599 original size:12 final size:13
Alignment explanation
Indices: 318551--318600 Score: 72
Period size: 13 Copynumber: 4.2 Consensus size: 13
318541 TATATAAAAA
318551 ATAAAAATATAAT
1 ATAAAAATATAAT
318564 ATAAAAA-ATAAT
1 ATAAAAATATAAT
318576 -T-AAAATATAAT
1 ATAAAAATATAAT
318587 ATAAAAATA-AAT
1 ATAAAAATATAAT
318599 AT
1 AT
318601 GATACGAATA
Statistics
Matches: 34, Mismatches: 0, Indels: 7
0.83 0.00 0.17
Matches are distributed among these distances:
10 4 0.12
11 6 0.18
12 11 0.32
13 13 0.38
ACGTcount: A:0.70, C:0.00, G:0.00, T:0.30
Consensus pattern (13 bp):
ATAAAAATATAAT
Found at i:318645 original size:18 final size:18
Alignment explanation
Indices: 318624--318771 Score: 62
Period size: 18 Copynumber: 8.4 Consensus size: 18
318614 AAACATATAA
318624 ATATATATGTAAAATATT
1 ATATATATGTAAAATATT
* *
318642 ATATATATTTATAATATT
1 ATATATATGTAAAATATT
* * * *
318660 TTAAATAAT-TAAAAAATAA
1 ATATAT-ATGTAAAATAT-T
318679 ATATAATATG---AATA-T
1 ATAT-ATATGTAAAATATT
* * * *
318694 AAAAACATAT-AAATA-T
1 ATATATATGTAAAATATT
318710 ATATATATGTAAAATATT
1 ATATATATGTAAAATATT
* *
318728 ATATATATTTATAATATT
1 ATATATATGTAAAATATT
* *
318746 TTAAATAAT-TAAAAATATT
1 ATATAT-ATGT-AAAATATT
318765 ATA-ATAT
1 ATATATAT
318772 TCATCTAAAT
Statistics
Matches: 95, Mismatches: 25, Indels: 21
0.67 0.18 0.15
Matches are distributed among these distances:
14 3 0.03
15 2 0.02
16 11 0.12
17 10 0.11
18 50 0.53
19 17 0.18
20 2 0.02
ACGTcount: A:0.55, C:0.01, G:0.02, T:0.43
Consensus pattern (18 bp):
ATATATATGTAAAATATT
Found at i:318668 original size:82 final size:84
Alignment explanation
Indices: 318582--318770 Score: 296
Period size: 86 Copynumber: 2.3 Consensus size: 84
318572 TAATTAAAAT
*
318582 ATAATATAAAAATAAATATGATACGAATATAAAAACATAT-A-A-ATATATATGTAAAATATTAT
1 ATAAT-TAAAAATAAATATAATACGAATATAAAAACATATAATATATATATATGTAAAATATTAT
318644 ATATATTTATAATATTTTAA
65 ATATATTTATAATATTTTAA
*
318664 ATAATTAAAAAATAAATATAATATGAATATAAAAACATATAAATATATATATATGTAAAATATTA
1 ATAATT-AAAAATAAATATAATACGAATATAAAAACATAT-AATATATATATATGTAAAATATTA
318729 TATATATTTATAATATTTTAA
64 TATATATTTATAATATTTTAA
*
318750 ATAATTAAAAAT-ATTATAATA
1 ATAATTAAAAATAAATATAATA
318771 TTCATCTAAA
Statistics
Matches: 99, Mismatches: 3, Indels: 8
0.90 0.03 0.07
Matches are distributed among these distances:
81 1 0.01
82 36 0.36
84 9 0.09
85 7 0.07
86 46 0.46
ACGTcount: A:0.57, C:0.02, G:0.03, T:0.39
Consensus pattern (84 bp):
ATAATTAAAAATAAATATAATACGAATATAAAAACATATAATATATATATATGTAAAATATTATA
TATATTTATAATATTTTAA
Found at i:319836 original size:12 final size:13
Alignment explanation
Indices: 319820--319874 Score: 55
Period size: 13 Copynumber: 4.4 Consensus size: 13
319810 AATTATTATT
319820 TAATTAATAAAAA
1 TAATTAATAAAAA
*
319833 -AATTTATTAAAATA
1 TAA-TTAATAAAA-A
319847 TAATT-ATAAAAA
1 TAATTAATAAAAA
319859 TAATT--TAAAAA
1 TAATTAATAAAAA
319870 TAATT
1 TAATT
319875 TTTAATATTT
Statistics
Matches: 37, Mismatches: 2, Indels: 8
0.79 0.04 0.17
Matches are distributed among these distances:
11 11 0.30
12 8 0.22
13 13 0.35
14 3 0.08
15 2 0.05
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (13 bp):
TAATTAATAAAAA
Found at i:319875 original size:11 final size:11
Alignment explanation
Indices: 319839--319875 Score: 56
Period size: 11 Copynumber: 3.2 Consensus size: 11
319829 AAAAAATTTA
319839 TTAAAATATAAT
1 TTAAAA-ATAAT
319851 TATAAAAATAAT
1 T-TAAAAATAAT
319863 TTAAAAATAAT
1 TTAAAAATAAT
319874 TT
1 TT
319876 TTAATATTTT
Statistics
Matches: 24, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
11 12 0.50
12 7 0.29
13 5 0.21
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (11 bp):
TTAAAAATAAT
Found at i:320682 original size:119 final size:118
Alignment explanation
Indices: 320447--320713 Score: 304
Period size: 119 Copynumber: 2.3 Consensus size: 118
320437 ATTTTTTAAT
* *
320447 AAAATAATATTTAATTAACTTTAAAAAATTTACATTAATAAATTAAAATAATAATTATTTTTTAA
1 AAAATAATATTTAATTAACTTTAAAAAAATTACATTAACAAATTAAAATAATAATTATTTTTTAA
*
320512 AATAAAATATTAAAACAAAAGGTTTATTATTATTATTGTTTTTTAATAAAATTA
66 AATAAAATATTAAAACAAAA-GTTTATTATTATTATTGTTTTTAAATAAAATTA
* *
320566 AAAATAATATTTAATTAAGTTTAAAAAAATTACATTAACAAATTAAAATATTAATTATTATATTT
1 AAAATAATATTTAATTAACTTTAAAAAAATTACATTAACAAATTAAAATAATAATTATT-T-TTT
** ** * *
320631 -TTATAAAA-A-TAAAA-AGTA-TTTTTTATTATTA-T-TTTTT-AATAAAATAA
64 AAAATAAAATATTAAAACAAAAGTTTATTATTATTATTGTTTTTAAATAAAATTA
*
320678 AAAATAATATTTGAA--AA-ATTAAAAAAATTATCATTA
1 AAAATAATATTT-AATTAACTTTAAAAAAATTA-CATTA
320714 TTCAAATAAA
Statistics
Matches: 133, Mismatches: 11, Indels: 16
0.83 0.07 0.10
Matches are distributed among these distances:
110 12 0.09
111 7 0.05
112 21 0.16
113 7 0.05
114 1 0.01
115 12 0.09
117 2 0.02
118 5 0.04
119 56 0.42
120 7 0.05
121 3 0.02
ACGTcount: A:0.53, C:0.02, G:0.02, T:0.43
Consensus pattern (118 bp):
AAAATAATATTTAATTAACTTTAAAAAAATTACATTAACAAATTAAAATAATAATTATTTTTTAA
AATAAAATATTAAAACAAAAGTTTATTATTATTATTGTTTTTAAATAAAATTA
Found at i:321208 original size:131 final size:129
Alignment explanation
Indices: 321011--321488 Score: 638
Period size: 126 Copynumber: 3.7 Consensus size: 129
321001 ATAAAAAATC
* * * ** *
321011 TTTTTTAATTTAAAAGTTTTTATTGTA-AAAAACATATTAATTAATATTTTAATTTATTAATATA
1 TTTTTTATTTTAAAATTTTTTATTTTATAAAAGTATAATAATTAATATTTTAATTTATTAATATA
321075 ATTTTTTAAACTTAATTAAATATTATTTTTATTTTATTAAAAATTATAATAAAAAATATTTTTTA
66 ATTTTTTAAACTTAATTAAATATTATTTTTATTTTATTAAAAATTATAATAAAAAATA-TTTTTA
* *
321140 TTTTTTATTTTAAAATTTTTTATTTTTATAAAAGTATAATAATTAATATTTTAATTTTTTAATGT
1 TTTTTTATTTTAAAATTTTTTA-TTTTATAAAAGTATAATAATTAATATTTTAATTTATTAATAT
* * *
321205 AATTTTTTAAACTTAATTAAATATTCTTTTTATTTTATTAGAAATTATAAT-AAAAA-A-TCTT-
65 AATTTTTTAAACTTAATTAAATATTATTTTTATTTTATTAAAAATTATAATAAAAAATATTTTTA
* * *
321266 TTTTTTATTTTAAAATTTTTTATTTTTATAAAAGTATAAAAATTAATATTTTAATTTTTTAATGT
1 TTTTTTATTTTAAAATTTTTTA-TTTTATAAAAGTATAATAATTAATATTTTAATTTATTAATAT
* * *
321331 AATTTTTTAAACTTAATTAAATATTATTTTTAATTTTATTAAAAAATAATAATAATAAACTCTTT
65 AATTTTTTAAACTTAATTAAATATTATTTTT-ATTTTATT-AAAAATTATAATAA-AAAATATTT
321396 TTA
127 TTA
321399 TTTTTTA-TTT-AAATTTTTTA-TTT-TAAAA--A-AATAATTAATATTTTAATTTATTAATATA
1 TTTTTTATTTTAAAATTTTTTATTTTATAAAAGTATAATAATTAATATTTTAATTTATTAATAT-
*
321457 AATATTTTTAAAATTAATTAAATATTATTTTT
65 AAT-TTTTTAAACTTAATTAAATATTATTTTT
321489 TAATTAAAAA
Statistics
Matches: 316, Mismatches: 22, Indels: 24
0.87 0.06 0.07
Matches are distributed among these distances:
125 25 0.08
126 98 0.31
127 38 0.12
128 15 0.05
129 25 0.08
130 12 0.04
131 90 0.28
132 6 0.02
133 7 0.02
ACGTcount: A:0.41, C:0.02, G:0.01, T:0.55
Consensus pattern (129 bp):
TTTTTTATTTTAAAATTTTTTATTTTATAAAAGTATAATAATTAATATTTTAATTTATTAATATA
ATTTTTTAAACTTAATTAAATATTATTTTTATTTTATTAAAAATTATAATAAAAAATATTTTTA
Found at i:321297 original size:18 final size:19
Alignment explanation
Indices: 321258--321298 Score: 50
Period size: 18 Copynumber: 2.2 Consensus size: 19
321248 ATTATAATAA
*
321258 AAAATCTTTTTTTTATTTT
1 AAAATCTTTTTTTTATTAT
321277 AAAAT-TTTTTATTT-TTAT
1 AAAATCTTTTT-TTTATTAT
321295 AAAA
1 AAAA
321299 GTATAAAAAT
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
18 12 0.60
19 8 0.40
ACGTcount: A:0.37, C:0.02, G:0.00, T:0.61
Consensus pattern (19 bp):
AAAATCTTTTTTTTATTAT
Found at i:321493 original size:22 final size:24
Alignment explanation
Indices: 321439--321495 Score: 64
Period size: 25 Copynumber: 2.4 Consensus size: 24
321429 ATAATTAATA
*
321439 TTTTAATTTATTAATATAAATATT
1 TTTTAATTAATTAATATAAATATT
* *
321463 TTTAAAATTAATTAA-AT-ATTATT
1 TTT-TAATTAATTAATATAAATATT
321486 TTTTAATTAA
1 TTTTAATTAA
321496 AAATAATAGT
Statistics
Matches: 28, Mismatches: 4, Indels: 4
0.78 0.11 0.11
Matches are distributed among these distances:
22 6 0.21
23 8 0.29
24 5 0.18
25 9 0.32
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (24 bp):
TTTTAATTAATTAATATAAATATT
Found at i:321536 original size:257 final size:255
Alignment explanation
Indices: 320998--321503 Score: 680
Period size: 257 Copynumber: 2.0 Consensus size: 255
320988 AAATATTATT
* * * ** **
320998 ATAATAAAAAATC--TTTTTTAATTTAAAAGTTTTTA-TTGTA-AAAAACATATTAATTAATATT
1 ATAATAAAAAATCTTTTTTTTATTTTAAAATTTTTTATTTTTATAAAAGTATAAAAATTAATATT
*
321059 TTAATTTATTAATATAATTTTTTAAACTTAATTAAATATTATTTTTATTTTATTAAAAATTATAA
66 TTAATTTATTAATATAATTTTTTAAACTTAATTAAATATTATTTTTATTTTATTAAAAATAATAA
*
321124 TAAAAAATATTTTTTATTTTTTATTTTAAAATTTTTTATTTTTATAAAAGTATAATAATTAATAT
131 TAAAAAATACTTTTTATTTTTTATTTTAAAATTTTTTA-TTTTATAAAAG-ATAATAATTAATAT
* * * * * * *
321189 TTTAATTTTTTAATGTAATTTTTTAAACTTAATTAAATATTCTTTTTATTTTATTAGAAATT
194 TTTAATTTATTAATATAATTTTTTAAAATTAATTAAATATTCTATTTATTTAATTAAAAATA
321251 ATAATAAAAAATCTTTTTTTTATTTTAAAATTTTTTATTTTTATAAAAGTATAAAAATTAATATT
1 ATAATAAAAAATCTTTTTTTTATTTTAAAATTTTTTATTTTTATAAAAGTATAAAAATTAATATT
* *
321316 TTAATTTTTTAATGTAATTTTTTAAACTTAATTAAATATTATTTTTAATTTTATTAAAAAATAAT
66 TTAATTTATTAATATAATTTTTTAAACTTAATTAAATATTATTTTT-ATTTTATT-AAAAATAAT
*
321381 AATAATAAACT-CTTTTTATTTTTTA-TTT-AAATTTTTTA-TTT-TAAAA-A-AATAATTAATA
129 AATAA-AAAATACTTTTTATTTTTTATTTTAAAATTTTTTATTTTATAAAAGATAATAATTAATA
321439 TTTTAATTTATTAATATAAATATTTTTAAAATTAATTAAATA-T-TATTT-TTTAATTAAAAATA
193 TTTTAATTTATTAATAT-AAT-TTTTTAAAATTAATTAAATATTCTATTTATTTAATTAAAAATA
321501 ATA
1 ATA
321504 GTTAATATAT
Statistics
Matches: 225, Mismatches: 19, Indels: 21
0.85 0.07 0.08
Matches are distributed among these distances:
250 14 0.06
251 30 0.13
252 5 0.02
253 32 0.14
254 5 0.02
255 23 0.10
256 4 0.02
257 71 0.32
258 11 0.05
259 26 0.12
260 4 0.02
ACGTcount: A:0.43, C:0.02, G:0.01, T:0.54
Consensus pattern (255 bp):
ATAATAAAAAATCTTTTTTTTATTTTAAAATTTTTTATTTTTATAAAAGTATAAAAATTAATATT
TTAATTTATTAATATAATTTTTTAAACTTAATTAAATATTATTTTTATTTTATTAAAAATAATAA
TAAAAAATACTTTTTATTTTTTATTTTAAAATTTTTTATTTTATAAAAGATAATAATTAATATTT
TAATTTATTAATATAATTTTTTAAAATTAATTAAATATTCTATTTATTTAATTAAAAATA
Found at i:321541 original size:117 final size:122
Alignment explanation
Indices: 321048--321541 Score: 397
Period size: 126 Copynumber: 4.0 Consensus size: 122
321038 AAAAACATAT
* *
321048 TAATTAATATTTTAATTTATTAATATAATTTTTTAAACTTAATTAAATATTATTTTTATTTTATT
1 TAATTAATATTTTAATTTATTAATATAATTTTTTAAAATTAATTAAATATTA-TTTTATTTAATT
* * * * * *
321113 -AAAAATTATAATAAAAAAT-ATTTTTTATTTTTTATTTTAAAATTTTTTATTTTTATAAAAGTA
65 AAAAAATAATAATATAAACTCA--TATTATTATTTA-TTT-AAATTTTTTA--ATT-TAAAA--A
321176 TAA
121 -AA
* * * * *
321179 TAATTAATATTTTAATTTTTTAATGTAATTTTTTAAACTTAATTAAATATTCTTTTTATTTTATT
1 TAATTAATATTTTAATTTATTAATATAATTTTTTAAAATTAATTAAATATT-ATTTTATTTAATT
* * * * *
321244 -AGAAATTATAATAAAAAATC-T-TT-TT-TTTATTTTAAAATTTTTTATTTTTATAAAAGTATA
65 AAAAAATAATAATATAAACTCATATTATTATTTA-TTT-AAATTTTTTA--ATT-TAAAA--A-A
321304 A
122 A
* * * * *
321305 AAATTAATATTTTAATTTTTTAATGTAATTTTTTAAACTTAATTAAATATTATTTTTAATTTTAT
1 TAATTAATATTTTAATTTATTAATATAATTTTTTAAAATTAATTAAATATTA-TTTT-ATTTAAT
* * * *
321370 TAAAAAATAATAATAATAAACTCTTTTTATTTTTTATTTAAATTTTTTATTTTAAAAAAA
64 TAAAAAATAATAAT-ATAAACTCATATTATTATTTATTTAAATTTTTTAATTTAAAAAAA
321430 TAATTAATATTTTAATTTATTAATATAAATATTTTTAAAATTAATTAAATATTA-TTT-TTTAAT
1 TAATTAATATTTTAATTTATTAATAT-AAT-TTTTTAAAATTAATTAAATATTATTTTATTTAAT
*
321493 T-AAAAATAATAGT-T-AA-T-ATATTATTATTTA-TTAAATTTTTTAAATTTAA
64 TAAAAAATAATAATATAAACTCATATTATTATTTATTTAAATTTTTT-AATTTAA
321542 TTAATTTATA
Statistics
Matches: 330, Mismatches: 20, Indels: 40
0.85 0.05 0.10
Matches are distributed among these distances:
116 11 0.03
117 16 0.05
118 1 0.00
119 2 0.01
120 1 0.00
122 11 0.03
123 6 0.02
125 28 0.08
126 94 0.28
127 32 0.10
128 17 0.05
129 10 0.03
130 1 0.00
131 91 0.28
132 5 0.02
133 4 0.01
ACGTcount: A:0.42, C:0.01, G:0.01, T:0.55
Consensus pattern (122 bp):
TAATTAATATTTTAATTTATTAATATAATTTTTTAAAATTAATTAAATATTATTTTATTTAATTA
AAAAATAATAATATAAACTCATATTATTATTTATTTAAATTTTTTAATTTAAAAAAA
Found at i:321661 original size:15 final size:15
Alignment explanation
Indices: 321641--321681 Score: 52
Period size: 14 Copynumber: 2.9 Consensus size: 15
321631 GTAAATTCGA
321641 AAAAAATTATATTTT
1 AAAAAATTATATTTT
321656 AAAAAA-TAT-TTTT
1 AAAAAATTATATTTT
321669 ATAAAAATT-TATT
1 A-AAAAATTATATT
321682 AATAAAAATA
Statistics
Matches: 23, Mismatches: 0, Indels: 6
0.79 0.00 0.21
Matches are distributed among these distances:
13 5 0.22
14 9 0.39
15 9 0.39
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (15 bp):
AAAAAATTATATTTT
Found at i:321674 original size:14 final size:14
Alignment explanation
Indices: 321642--321691 Score: 50
Period size: 14 Copynumber: 3.5 Consensus size: 14
321632 TAAATTCGAA
321642 AAAAATTATATTTTA-
1 AAAAA-TAT-TTTTAT
321657 AAAAATATTTTTAT
1 AAAAATATTTTTAT
*
321671 AAAAAT-TTATTAAT
1 AAAAATATT-TTTAT
321685 AAAAATA
1 AAAAATA
321692 AAAATATTTA
Statistics
Matches: 31, Mismatches: 1, Indels: 6
0.82 0.03 0.16
Matches are distributed among these distances:
13 7 0.23
14 19 0.61
15 5 0.16
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (14 bp):
AAAAATATTTTTAT
Found at i:322163 original size:23 final size:23
Alignment explanation
Indices: 322120--322163 Score: 54
Period size: 23 Copynumber: 1.9 Consensus size: 23
322110 TTAGAGAGAG
* *
322120 TATTTATAAATTTTAATTAAAAT
1 TATTTATAAATTTAAAATAAAAT
322143 TATTT-TAAATTGTAAAATAAA
1 TATTTATAAATT-TAAAATAAA
322164 TAAAAATATT
Statistics
Matches: 18, Mismatches: 2, Indels: 2
0.82 0.09 0.09
Matches are distributed among these distances:
22 6 0.33
23 12 0.67
ACGTcount: A:0.50, C:0.00, G:0.02, T:0.48
Consensus pattern (23 bp):
TATTTATAAATTTAAAATAAAAT
Found at i:322922 original size:22 final size:19
Alignment explanation
Indices: 322894--322938 Score: 54
Period size: 19 Copynumber: 2.2 Consensus size: 19
322884 AGACGCAATA
322894 AAAAATAAATATAATATCATAT
1 AAAAAT-AATATAA-AT-ATAT
*
322916 AAAAATAATTTAAATATAT
1 AAAAATAATATAAATATAT
322935 AAAA
1 AAAA
322939 TATTAAAATT
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
19 8 0.36
20 2 0.09
21 6 0.27
22 6 0.27
ACGTcount: A:0.67, C:0.02, G:0.00, T:0.31
Consensus pattern (19 bp):
AAAAATAATATAAATATAT
Found at i:328646 original size:31 final size:29
Alignment explanation
Indices: 328608--328667 Score: 75
Period size: 29 Copynumber: 2.0 Consensus size: 29
328598 GCTTCAATCC
*
328608 GATAAAAATTTATTAGAAGTTTTTATATTAT
1 GATAAAAA-ATATTAGAA-TTTTTATATTAT
**
328639 GATAAAAAATATTTTAATTTTTATATTAT
1 GATAAAAAATATTAGAATTTTTATATTAT
328668 TAAAGTTAGT
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
29 12 0.46
30 6 0.23
31 8 0.31
ACGTcount: A:0.43, C:0.00, G:0.07, T:0.50
Consensus pattern (29 bp):
GATAAAAAATATTAGAATTTTTATATTAT
Found at i:328663 original size:29 final size:28
Alignment explanation
Indices: 328627--328699 Score: 87
Period size: 29 Copynumber: 2.6 Consensus size: 28
328617 TTATTAGAAG
328627 TTTTTATATTATGATAAA-AAATATTTTAA
1 TTTTTATATTAT--TAAAGAAATATTTTAA
* *
328656 TTTTTATATTATTAAAGTTAGTATTTTAA
1 TTTTTATATTATTAAAG-AAATATTTTAA
328685 TTTTTATATT-TTAAA
1 TTTTTATATTATTAAA
328700 ATTATAATAA
Statistics
Matches: 40, Mismatches: 2, Indels: 5
0.85 0.04 0.11
Matches are distributed among these distances:
27 4 0.10
28 5 0.12
29 31 0.77
ACGTcount: A:0.38, C:0.00, G:0.04, T:0.58
Consensus pattern (28 bp):
TTTTTATATTATTAAAGAAATATTTTAA
Found at i:328694 original size:14 final size:14
Alignment explanation
Indices: 328647--328698 Score: 61
Period size: 14 Copynumber: 3.6 Consensus size: 14
328637 ATGATAAAAA
328647 ATATTTTAATTTTT
1 ATATTTTAATTTTT
**
328661 ATATTATTAA-AGTT
1 ATATT-TTAATTTTT
328675 AGTATTTTAATTTTT
1 A-TATTTTAATTTTT
328690 ATATTTTAA
1 ATATTTTAA
328699 AATTATAATA
Statistics
Matches: 31, Mismatches: 4, Indels: 6
0.76 0.10 0.15
Matches are distributed among these distances:
14 20 0.65
15 11 0.35
ACGTcount: A:0.35, C:0.00, G:0.04, T:0.62
Consensus pattern (14 bp):
ATATTTTAATTTTT
Found at i:328889 original size:19 final size:19
Alignment explanation
Indices: 328865--328924 Score: 57
Period size: 19 Copynumber: 3.0 Consensus size: 19
328855 TGACATCATA
*
328865 TAATATATCAATATTTTTT
1 TAATATATAAATATTTTTT
*
328884 TAATATTTAAATAATTTTTT
1 TAATATATAAAT-ATTTTTT
* *
328904 AAATAATATTAATTATTTTTT
1 TAAT-ATA-TAAATATTTTTT
328925 ATTTGTTATA
Statistics
Matches: 33, Mismatches: 5, Indels: 4
0.79 0.12 0.10
Matches are distributed among these distances:
19 10 0.30
20 10 0.30
21 9 0.27
22 4 0.12
ACGTcount: A:0.40, C:0.02, G:0.00, T:0.58
Consensus pattern (19 bp):
TAATATATAAATATTTTTT
Found at i:328921 original size:21 final size:20
Alignment explanation
Indices: 328876--328925 Score: 57
Period size: 21 Copynumber: 2.5 Consensus size: 20
328866 AATATATCAA
*
328876 TATTTTTTTAATATTTAAAT
1 TATTTTTTAAATATTTAAAT
*
328896 AATTTTTTAAATAATATT-AAT
1 TATTTTTTAAAT-AT-TTAAAT
328917 TATTTTTTA
1 TATTTTTTA
328926 TTTGTTATAA
Statistics
Matches: 25, Mismatches: 3, Indels: 3
0.81 0.10 0.10
Matches are distributed among these distances:
20 10 0.40
21 13 0.52
22 2 0.08
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (20 bp):
TATTTTTTAAATATTTAAAT
Found at i:328956 original size:14 final size:14
Alignment explanation
Indices: 328939--328992 Score: 72
Period size: 15 Copynumber: 3.7 Consensus size: 14
328929 GTTATAATTT
328939 TTAAAATATAAAAA
1 TTAAAATATAAAAA
* *
328953 TTAAAAATATTAAAT
1 TT-AAAATATAAAAA
328968 TTAATAATATAAAAA
1 TTAA-AATATAAAAA
328983 TTAAAATATA
1 TTAAAATATA
328993 TTTTTCATTA
Statistics
Matches: 34, Mismatches: 4, Indels: 4
0.81 0.10 0.10
Matches are distributed among these distances:
14 10 0.29
15 24 0.71
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (14 bp):
TTAAAATATAAAAA
Found at i:328977 original size:30 final size:30
Alignment explanation
Indices: 328938--328994 Score: 98
Period size: 30 Copynumber: 1.9 Consensus size: 30
328928 TGTTATAATT
328938 TTTAAAATATAAAAATTAAAA-ATATTAAA
1 TTTAAAATATAAAAATTAAAATATATTAAA
328967 TTTAATAATATAAAAATTAAAATATATT
1 TTTAA-AATATAAAAATTAAAATATATT
328995 TTTCATTATA
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
29 5 0.19
30 16 0.62
31 5 0.19
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (30 bp):
TTTAAAATATAAAAATTAAAATATATTAAA
Found at i:331510 original size:2 final size:2
Alignment explanation
Indices: 331503--331531 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
331493 TTAGCCCAAG
331503 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
331532 AATTAACTGG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:333419 original size:69 final size:69
Alignment explanation
Indices: 333346--333485 Score: 280
Period size: 69 Copynumber: 2.0 Consensus size: 69
333336 AATTGAGAAG
333346 AACACTCGATACTTTGGATGTGGAAGAAAATGAAGAACGAACGAAACAACTAAACTAGAAAGAAA
1 AACACTCGATACTTTGGATGTGGAAGAAAATGAAGAACGAACGAAACAACTAAACTAGAAAGAAA
333411 GGTT
66 GGTT
333415 AACACTCGATACTTTGGATGTGGAAGAAAATGAAGAACGAACGAAACAACTAAACTAGAAAGAAA
1 AACACTCGATACTTTGGATGTGGAAGAAAATGAAGAACGAACGAAACAACTAAACTAGAAAGAAA
333480 GGTT
66 GGTT
333484 AA
1 AA
333486 GATGCCCTAA
Statistics
Matches: 71, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
69 71 1.00
ACGTcount: A:0.49, C:0.13, G:0.21, T:0.17
Consensus pattern (69 bp):
AACACTCGATACTTTGGATGTGGAAGAAAATGAAGAACGAACGAAACAACTAAACTAGAAAGAAA
GGTT
Found at i:333724 original size:24 final size:22
Alignment explanation
Indices: 333654--333731 Score: 75
Period size: 24 Copynumber: 3.3 Consensus size: 22
333644 ACGGAGTAGA
* *
333654 TTATTAAATTTTATATTAAGTT
1 TTATTAAATTATATATTAAATT
*
333676 TTATGTAAATTATAAATATTTAATT
1 TTAT-TAAATTAT--ATATTAAATT
333701 TTATTAAATTATATTATTAAAATT
1 TTATTAAATTATA-TATT-AAATT
*
333725 TTTTTAA
1 TTATTAA
333732 TAAATTTACT
Statistics
Matches: 46, Mismatches: 5, Indels: 8
0.78 0.08 0.14
Matches are distributed among these distances:
22 5 0.11
23 11 0.24
24 18 0.39
25 12 0.26
ACGTcount: A:0.41, C:0.00, G:0.03, T:0.56
Consensus pattern (22 bp):
TTATTAAATTATATATTAAATT
Found at i:333946 original size:19 final size:19
Alignment explanation
Indices: 333924--333960 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
333914 TTAATAAAAT
*
333924 TAAAAATTTATAATTAATA
1 TAAAAATTAATAATTAATA
*
333943 TAAAAATTAATACTTAAT
1 TAAAAATTAATAATTAAT
333961 TTAATAACCT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 16 1.00
ACGTcount: A:0.57, C:0.03, G:0.00, T:0.41
Consensus pattern (19 bp):
TAAAAATTAATAATTAATA
Found at i:333948 original size:26 final size:25
Alignment explanation
Indices: 333903--333952 Score: 66
Period size: 24 Copynumber: 2.0 Consensus size: 25
333893 ATAAACATTT
*
333903 AATTATATAATTTAATAAAATTAAA
1 AATTATATAATTAAATAAAATTAAA
333928 AATT-TATAATTAATATAAAAATTAA
1 AATTATATAATTAA-AT-AAAATTAA
333953 TACTTAATTT
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
24 8 0.36
25 6 0.27
26 8 0.36
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (25 bp):
AATTATATAATTAAATAAAATTAAA
Found at i:334178 original size:24 final size:24
Alignment explanation
Indices: 334151--334215 Score: 66
Period size: 24 Copynumber: 2.8 Consensus size: 24
334141 TAATATCGTA
*
334151 TAAATTATAAATATTTAA-TTTTAT
1 TAAATTAT-AATATTAAATTTTTAT
*
334175 TAAATTATATTATTAAATTTTTAT
1 TAAATTATAATATTAAATTTTTAT
334199 T--ATTAATAA-ATTAAATT
1 TAAATT-ATAATATTAAATT
334216 ATTTGTATTA
Statistics
Matches: 36, Mismatches: 3, Indels: 6
0.80 0.07 0.13
Matches are distributed among these distances:
22 11 0.31
23 10 0.28
24 15 0.42
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (24 bp):
TAAATTATAATATTAAATTTTTAT
Found at i:334189 original size:13 final size:14
Alignment explanation
Indices: 334171--334204 Score: 52
Period size: 14 Copynumber: 2.5 Consensus size: 14
334161 ATATTTAATT
334171 TTATTAAA-TTATA
1 TTATTAAATTTATA
*
334184 TTATTAAATTTTTA
1 TTATTAAATTTATA
334198 TTATTAA
1 TTATTAA
334205 TAAATTAAAT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
13 8 0.42
14 11 0.58
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (14 bp):
TTATTAAATTTATA
Found at i:334192 original size:30 final size:30
Alignment explanation
Indices: 334151--334218 Score: 86
Period size: 30 Copynumber: 2.3 Consensus size: 30
334141 TAATATCGTA
*
334151 TAAATTA-TAAATATTTAATT-TTATTAAAT
1 TAAATTATTAAAT-TTTAATTATTAATAAAT
* *
334180 TATATTATTAAATTTTTATTATTAATAAAT
1 TAAATTATTAAATTTTAATTATTAATAAAT
334210 TAAATTATT
1 TAAATTATT
334219 TGTATTAATT
Statistics
Matches: 33, Mismatches: 4, Indels: 3
0.82 0.10 0.08
Matches are distributed among these distances:
29 12 0.36
30 21 0.64
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (30 bp):
TAAATTATTAAATTTTAATTATTAATAAAT
Found at i:334224 original size:22 final size:22
Alignment explanation
Indices: 334186--334227 Score: 59
Period size: 22 Copynumber: 1.9 Consensus size: 22
334176 AAATTATATT
*
334186 ATTAAATTTTTATTATTAATAA
1 ATTAAATTTTTAGTATTAATAA
334208 ATTAAATTATTT-GTATTAAT
1 ATTAAATT-TTTAGTATTAAT
334228 TTTATCAAAT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
22 15 0.83
23 3 0.17
ACGTcount: A:0.43, C:0.00, G:0.02, T:0.55
Consensus pattern (22 bp):
ATTAAATTTTTAGTATTAATAA
Found at i:337529 original size:21 final size:20
Alignment explanation
Indices: 337505--337553 Score: 62
Period size: 21 Copynumber: 2.4 Consensus size: 20
337495 TATAATTAAA
337505 TTTAAATAAAAAATATATTAT
1 TTTAAATAAAAAA-ATATTAT
* *
337526 TTTAATTTTAAAAAATATTAT
1 TTTAA-ATAAAAAAATATTAT
337547 TTTAAAT
1 TTTAAAT
337554 CAAATTAAAT
Statistics
Matches: 24, Mismatches: 3, Indels: 3
0.80 0.10 0.10
Matches are distributed among these distances:
20 1 0.04
21 17 0.71
22 6 0.25
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (20 bp):
TTTAAATAAAAAAATATTAT
Found at i:338786 original size:2 final size:2
Alignment explanation
Indices: 338732--338767 Score: 72
Period size: 2 Copynumber: 18.0 Consensus size: 2
338722 TTGAAACCTT
338732 GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA
1 GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA
338768 AGGGGGGTTC
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 34 1.00
ACGTcount: A:0.50, C:0.00, G:0.50, T:0.00
Consensus pattern (2 bp):
GA
Found at i:338885 original size:24 final size:23
Alignment explanation
Indices: 338844--338933 Score: 78
Period size: 24 Copynumber: 3.8 Consensus size: 23
338834 ATTTTTAATA
**
338844 TTAAAT-ATTTTATTTATTTATT
1 TTAAATAATTTTAAATATTTATT
338866 TTGAAATAATTTTAAATA-TTATTT
1 TT-AAATAATTTTAAATATTTA-TT
*
338890 TTAAATTAATTTTAAAT-TTAACTT
1 TTAAA-TAATTTTAAATATTTA-TT
338914 TTAAATATATTTTTAAATAT
1 TTAAATA-A-TTTTAAATAT
338934 AATATTTATT
Statistics
Matches: 56, Mismatches: 4, Indels: 12
0.78 0.06 0.17
Matches are distributed among these distances:
22 2 0.04
23 12 0.21
24 33 0.59
25 8 0.14
26 1 0.02
ACGTcount: A:0.40, C:0.01, G:0.01, T:0.58
Consensus pattern (23 bp):
TTAAATAATTTTAAATATTTATT
Found at i:338893 original size:13 final size:13
Alignment explanation
Indices: 338875--338933 Score: 63
Period size: 12 Copynumber: 4.8 Consensus size: 13
338865 TTTGAAATAA
338875 TTTTAAATATTAT
1 TTTTAAATATTAT
*
338888 TTTT-AA-ATTAA
1 TTTTAAATATTAT
*
338899 TTTTAAAT-TTAAC
1 TTTTAAATATT-AT
338912 TTTTAAATA-TAT
1 TTTTAAATATTAT
338924 TTTTAAATAT
1 TTTTAAATAT
338934 AATATTTATT
Statistics
Matches: 38, Mismatches: 3, Indels: 10
0.75 0.06 0.20
Matches are distributed among these distances:
11 8 0.21
12 16 0.42
13 14 0.37
ACGTcount: A:0.41, C:0.02, G:0.00, T:0.58
Consensus pattern (13 bp):
TTTTAAATATTAT
Found at i:338897 original size:11 final size:11
Alignment explanation
Indices: 338861--338931 Score: 61
Period size: 12 Copynumber: 6.1 Consensus size: 11
338851 TTTTATTTAT
*
338861 TTATTTTGAAA
1 TTATTTTTAAA
* *
338872 TAATTTTAAATA
1 TTATTTTTAA-A
338884 TTATTTTTAAA
1 TTATTTTTAAA
*
338895 TTAATTTTAAA
1 TTATTTTTAAA
*
338906 TTTAACTTTTAAA
1 -TT-ATTTTTAAA
338919 TATATTTTTAAA
1 T-TATTTTTAAA
338931 T
1 T
338932 ATAATATTTA
Statistics
Matches: 49, Mismatches: 7, Indels: 7
0.78 0.11 0.11
Matches are distributed among these distances:
11 19 0.39
12 21 0.43
13 9 0.18
ACGTcount: A:0.41, C:0.01, G:0.01, T:0.56
Consensus pattern (11 bp):
TTATTTTTAAA
Found at i:338901 original size:12 final size:12
Alignment explanation
Indices: 338863--338941 Score: 58
Period size: 13 Copynumber: 6.6 Consensus size: 12
338853 TTATTTATTT
*
338863 ATTTTGAAA-TA
1 ATTTTTAAATTA
*
338874 A-TTTTAAATATT
1 ATTTTTAAAT-TA
338886 ATTTTTAAATTA
1 ATTTTTAAATTA
338898 A-TTTTAAATTTA
1 ATTTTTAAA-TTA
*
338910 ACTTTTAAA-TA
1 ATTTTTAAATTA
338921 TATTTTTAAATATA
1 -ATTTTTAAAT-TA
*
338935 ATATTTA
1 ATTTTTA
338942 TTAAAATAAT
Statistics
Matches: 55, Mismatches: 5, Indels: 14
0.74 0.07 0.19
Matches are distributed among these distances:
10 6 0.11
11 10 0.18
12 16 0.29
13 21 0.38
14 2 0.04
ACGTcount: A:0.43, C:0.01, G:0.01, T:0.54
Consensus pattern (12 bp):
ATTTTTAAATTA
Found at i:338940 original size:15 final size:15
Alignment explanation
Indices: 338916--338954 Score: 55
Period size: 15 Copynumber: 2.7 Consensus size: 15
338906 TTTAACTTTT
338916 AAAT-ATATTT-TTA
1 AAATAATATTTATTA
338929 AATATAATATTTATTA
1 AA-ATAATATTTATTA
338945 AAATAATATT
1 AAATAATATT
338955 ATATGTAATT
Statistics
Matches: 23, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
13 2 0.09
14 2 0.09
15 14 0.61
16 5 0.22
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (15 bp):
AAATAATATTTATTA
Found at i:338941 original size:25 final size:23
Alignment explanation
Indices: 338863--338941 Score: 79
Period size: 24 Copynumber: 3.3 Consensus size: 23
338853 TTATTTATTT
338863 ATTTTGAAA-TAATTTTAAATATTA
1 ATTTT-AAATTAATTTTAAATA-TA
* *
338887 TTTTTAAATTAATTTTAAATTTA
1 ATTTTAAATTAATTTTAAATATA
*
338910 ACTTTTAAATATATTTTTAAATATA
1 A-TTTTAAAT-TAATTTTAAATATA
338935 ATATTTA
1 AT-TTTA
338942 TTAAAATAAT
Statistics
Matches: 46, Mismatches: 5, Indels: 7
0.79 0.09 0.12
Matches are distributed among these distances:
23 5 0.11
24 24 0.52
25 17 0.37
ACGTcount: A:0.43, C:0.01, G:0.01, T:0.54
Consensus pattern (23 bp):
ATTTTAAATTAATTTTAAATATA
Found at i:339080 original size:21 final size:21
Alignment explanation
Indices: 339037--339100 Score: 64
Period size: 21 Copynumber: 3.1 Consensus size: 21
339027 TATTATTATT
*
339037 TTTATT-TTAATATTTTATA-A
1 TTTATTATTAA-ATTTAATATA
339057 TTTATTATTAAATTTAATATA
1 TTTATTATTAAATTTAATATA
339078 TTTAATATATT--ATTTAATATA
1 TTT-AT-TATTAAATTTAATATA
339099 TT
1 TT
339101 AAGATATTAA
Statistics
Matches: 39, Mismatches: 1, Indels: 7
0.83 0.02 0.15
Matches are distributed among these distances:
20 13 0.33
21 20 0.51
22 2 0.05
23 4 0.10
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (21 bp):
TTTATTATTAAATTTAATATA
Found at i:339107 original size:20 final size:21
Alignment explanation
Indices: 339068--339116 Score: 73
Period size: 20 Copynumber: 2.4 Consensus size: 21
339058 TTATTATTAA
*
339068 ATTTAATATATTTAATATATT
1 ATTTAATATATTTAAGATATT
339089 ATTTAATATA-TTAAGATATT
1 ATTTAATATATTTAAGATATT
*
339109 AATTAATA
1 ATTTAATA
339117 AGATTAATTT
Statistics
Matches: 26, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
20 16 0.62
21 10 0.38
ACGTcount: A:0.47, C:0.00, G:0.02, T:0.51
Consensus pattern (21 bp):
ATTTAATATATTTAAGATATT
Found at i:339205 original size:28 final size:29
Alignment explanation
Indices: 339188--339247 Score: 77
Period size: 31 Copynumber: 2.0 Consensus size: 29
339178 TTTTTATATC
339188 TTATTTAATATCATTTTAATTAATTATAATA
1 TTATTTAATAT-ATTTT-ATTAATTATAATA
*
339219 TTATTTAATATTTTTTATTATATT-TAATA
1 TTATTTAATATATTTTATTA-ATTATAATA
339248 AATTAAATCA
Statistics
Matches: 27, Mismatches: 1, Indels: 4
0.84 0.03 0.12
Matches are distributed among these distances:
29 9 0.33
30 7 0.26
31 11 0.41
ACGTcount: A:0.38, C:0.02, G:0.00, T:0.60
Consensus pattern (29 bp):
TTATTTAATATATTTTATTAATTATAATA
Found at i:339227 original size:10 final size:10
Alignment explanation
Indices: 339188--339247 Score: 52
Period size: 10 Copynumber: 6.0 Consensus size: 10
339178 TTTTTATATC
339188 TTATTTAATA
1 TTATTTAATA
*
339198 TCATTTTAAT-
1 TTA-TTTAATA
*
339208 TAATTATAATA
1 TTATT-TAATA
339219 TTATTTAATA
1 TTATTTAATA
* *
339229 TTTTTTATTA
1 TTATTTAATA
339239 -TATTTAATA
1 TTATTTAATA
339248 AATTAAATCA
Statistics
Matches: 40, Mismatches: 7, Indels: 7
0.74 0.13 0.13
Matches are distributed among these distances:
9 9 0.22
10 21 0.52
11 10 0.25
ACGTcount: A:0.38, C:0.02, G:0.00, T:0.60
Consensus pattern (10 bp):
TTATTTAATA
Found at i:339670 original size:18 final size:21
Alignment explanation
Indices: 339649--339688 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 21
339639 AATAATATAA
339649 TTAT-AAGT-ATT-AATTATT
1 TTATAAAGTAATTGAATTATT
339667 TTATAAAGTAATTGAATTATT
1 TTATAAAGTAATTGAATTATT
339688 T
1 T
339689 ATTACATTTT
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
18 4 0.21
19 4 0.21
20 3 0.16
21 8 0.42
ACGTcount: A:0.40, C:0.00, G:0.07, T:0.53
Consensus pattern (21 bp):
TTATAAAGTAATTGAATTATT
Found at i:341522 original size:8 final size:8
Alignment explanation
Indices: 341501--341550 Score: 55
Period size: 8 Copynumber: 6.0 Consensus size: 8
341491 TTTATCTTTA
*
341501 ATTTTTAT
1 ATTTTTTT
*
341509 AATTTTTT
1 ATTTTTTT
341517 ATTTTTTT
1 ATTTTTTT
341525 AAATTTTTTT
1 --ATTTTTTT
*
341535 ATTTTTTA
1 ATTTTTTT
341543 ATTTTTTT
1 ATTTTTTT
341551 TTAATTATTA
Statistics
Matches: 35, Mismatches: 5, Indels: 4
0.80 0.11 0.09
Matches are distributed among these distances:
8 27 0.77
10 8 0.23
ACGTcount: A:0.22, C:0.00, G:0.00, T:0.78
Consensus pattern (8 bp):
ATTTTTTT
Found at i:341522 original size:16 final size:15
Alignment explanation
Indices: 341483--341549 Score: 64
Period size: 17 Copynumber: 4.3 Consensus size: 15
341473 CATACGATAC
* *
341483 TTTTATTATTT-ATC
1 TTTTATTTTTTAATT
*
341497 TTTAATTTTTATAATT
1 TTTTATTTTT-TAATT
341513 TTTTATTTTTTTAAATTT
1 TTTTA-TTTTTT-AA-TT
341531 TTTTATTTTTTAATT
1 TTTTATTTTTTAATT
341546 TTTT
1 TTTT
341550 TTTAATTATT
Statistics
Matches: 44, Mismatches: 4, Indels: 9
0.77 0.07 0.16
Matches are distributed among these distances:
14 8 0.18
15 7 0.16
16 9 0.20
17 13 0.30
18 7 0.16
ACGTcount: A:0.22, C:0.01, G:0.00, T:0.76
Consensus pattern (15 bp):
TTTTATTTTTTAATT
Found at i:341550 original size:17 final size:17
Alignment explanation
Indices: 341501--341551 Score: 68
Period size: 17 Copynumber: 3.0 Consensus size: 17
341491 TTTATCTTTA
*
341501 ATTTTTATAATTTTTTAT
1 ATTTTT-TAATTTTTTTT
*
341519 -TTTTTTAAATTTTTTT
1 ATTTTTTAATTTTTTTT
341535 ATTTTTTAATTTTTTTT
1 ATTTTTTAATTTTTTTT
341552 TAATTATTAA
Statistics
Matches: 29, Mismatches: 3, Indels: 3
0.83 0.09 0.09
Matches are distributed among these distances:
16 9 0.31
17 20 0.69
ACGTcount: A:0.22, C:0.00, G:0.00, T:0.78
Consensus pattern (17 bp):
ATTTTTTAATTTTTTTT
Found at i:341553 original size:18 final size:18
Alignment explanation
Indices: 341502--341550 Score: 68
Period size: 18 Copynumber: 2.8 Consensus size: 18
341492 TTATCTTTAA
341502 TTTTTATAA-TTTTTTATT
1 TTTTTA-AATTTTTTTATT
341520 TTTTTAAATTTTTTTA-T
1 TTTTTAAATTTTTTTATT
341537 TTTTT-AATTTTTTT
1 TTTTTAAATTTTTTT
341551 TTAATTATTA
Statistics
Matches: 30, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
16 9 0.30
17 8 0.27
18 13 0.43
ACGTcount: A:0.20, C:0.00, G:0.00, T:0.80
Consensus pattern (18 bp):
TTTTTAAATTTTTTTATT
Found at i:341591 original size:16 final size:16
Alignment explanation
Indices: 341570--341601 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
341560 AAATATAATA
341570 AGATAATTAAATTGAT
1 AGATAATTAAATTGAT
*
341586 AGATAATTCAATTGAT
1 AGATAATTAAATTGAT
341602 TCTATCTCCA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.47, C:0.03, G:0.12, T:0.38
Consensus pattern (16 bp):
AGATAATTAAATTGAT
Found at i:343372 original size:32 final size:32
Alignment explanation
Indices: 343308--343380 Score: 94
Period size: 32 Copynumber: 2.3 Consensus size: 32
343298 AAAGTATCAT
*
343308 ATATTATATAAATTTTAATATATTAATAATTC
1 ATATTATATAAATTTTAATACATTAATAATTC
* * *
343340 ATATCATATAAA-TTTAATACATCTATTTATTC
1 ATATTATATAAATTTTAATACAT-TAATAATTC
343372 ATATTATAT
1 ATATTATAT
343381 TTATATTATT
Statistics
Matches: 35, Mismatches: 5, Indels: 2
0.83 0.12 0.05
Matches are distributed among these distances:
31 9 0.26
32 26 0.74
ACGTcount: A:0.44, C:0.07, G:0.00, T:0.49
Consensus pattern (32 bp):
ATATTATATAAATTTTAATACATTAATAATTC
Found at i:344356 original size:30 final size:29
Alignment explanation
Indices: 344294--344357 Score: 71
Period size: 29 Copynumber: 2.2 Consensus size: 29
344284 CTTCATTTTC
*
344294 TAAATT-TTCACTCTCTCTCTACACTTTA
1 TAAATTCTTCACTCTCTCTCTAAACTTTA
*
344322 -AAATTCTCTCACT-TCTCTCTAAAAGTTTA
1 TAAATTCT-TCACTCTCTCTCT-AAACTTTA
344351 TAAATTC
1 TAAATTC
344358 GTAAGGTAAT
Statistics
Matches: 30, Mismatches: 2, Indels: 6
0.79 0.05 0.16
Matches are distributed among these distances:
27 5 0.17
28 8 0.27
29 11 0.37
30 6 0.20
ACGTcount: A:0.30, C:0.25, G:0.02, T:0.44
Consensus pattern (29 bp):
TAAATTCTTCACTCTCTCTCTAAACTTTA
Found at i:344589 original size:14 final size:14
Alignment explanation
Indices: 344564--344602 Score: 51
Period size: 14 Copynumber: 2.7 Consensus size: 14
344554 TATTATGTGG
344564 AATTAGGTTTAGCAT
1 AATTA-GTTTAGCAT
**
344579 AATTAGTTTAGGGT
1 AATTAGTTTAGCAT
344593 AATTAGTTTA
1 AATTAGTTTA
344603 AAGCCTATAA
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
14 17 0.77
15 5 0.23
ACGTcount: A:0.33, C:0.03, G:0.21, T:0.44
Consensus pattern (14 bp):
AATTAGTTTAGCAT
Found at i:349509 original size:15 final size:15
Alignment explanation
Indices: 349491--349531 Score: 55
Period size: 15 Copynumber: 2.7 Consensus size: 15
349481 TGATCCTGTC
*
349491 CATCCACCACTCGTG
1 CATCCACCACCCGTG
**
349506 CATCCATAACCCGTG
1 CATCCACCACCCGTG
349521 CATCCACCACC
1 CATCCACCACC
349532 TGTTTACCCA
Statistics
Matches: 21, Mismatches: 5, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
15 21 1.00
ACGTcount: A:0.24, C:0.49, G:0.10, T:0.17
Consensus pattern (15 bp):
CATCCACCACCCGTG
Found at i:349683 original size:27 final size:27
Alignment explanation
Indices: 349635--349687 Score: 72
Period size: 27 Copynumber: 2.0 Consensus size: 27
349625 ATATTTCTCT
* *
349635 CTCAATCTCCATACCAGTCATATCCTA
1 CTCAACCTCCATACCAGACATATCCTA
349662 CTCAACCTCCATACCCA-ACATATCCT
1 CTCAACCTCCATA-CCAGACATATCCT
349688 GCCACGACCC
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
27 20 0.87
28 3 0.13
ACGTcount: A:0.30, C:0.42, G:0.02, T:0.26
Consensus pattern (27 bp):
CTCAACCTCCATACCAGACATATCCTA
Found at i:350044 original size:75 final size:75
Alignment explanation
Indices: 349959--350110 Score: 207
Period size: 75 Copynumber: 2.0 Consensus size: 75
349949 TTGTTGATTA
* ** * *
349959 TAGTTATTGATAGTAGCAATGTGGAATATG-TAGAAACATTTGTTGATTGTAGTTATCGTGTAGA
1 TAGTTATTGATAGTAGCAATGTGAAATATGCT-GAAACATTTGTTGATTGTAAATATCATGCAGA
350023 TTATCTCAGAT
65 TTATCTCAGAT
* * *
350034 TAGTTGTTGATAGTAGTACTGTGAAATATGCTGAAACATTTGTTGATTGTAAATATCATGCAGAT
1 TAGTTATTGATAGTAGCAATGTGAAATATGCTGAAACATTTGTTGATTGTAAATATCATGCAGAT
*
350099 TATCTCGGAT
66 TATCTCAGAT
350109 TA
1 TA
350111 TCGTTTCATC
Statistics
Matches: 67, Mismatches: 9, Indels: 2
0.86 0.12 0.03
Matches are distributed among these distances:
75 66 0.99
76 1 0.01
ACGTcount: A:0.31, C:0.08, G:0.22, T:0.39
Consensus pattern (75 bp):
TAGTTATTGATAGTAGCAATGTGAAATATGCTGAAACATTTGTTGATTGTAAATATCATGCAGAT
TATCTCAGAT
Found at i:350590 original size:11 final size:11
Alignment explanation
Indices: 350570--350618 Score: 57
Period size: 11 Copynumber: 4.5 Consensus size: 11
350560 TATTATTTGA
350570 TTAA-TTAATT
1 TTAATTTAATT
*
350580 TTTATTTAA-T
1 TTAATTTAATT
350590 TTAATTTAATT
1 TTAATTTAATT
350601 TTAATTTAGATT
1 TTAATTTA-ATT
*
350613 ATAATT
1 TTAATT
350619 ATATATAATT
Statistics
Matches: 33, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
10 12 0.36
11 13 0.39
12 8 0.24
ACGTcount: A:0.37, C:0.00, G:0.02, T:0.61
Consensus pattern (11 bp):
TTAATTTAATT
Found at i:350603 original size:16 final size:18
Alignment explanation
Indices: 350584--350618 Score: 56
Period size: 16 Copynumber: 2.1 Consensus size: 18
350574 TTAATTTTTA
350584 TTTAATTTA-ATT-TAAT
1 TTTAATTTAGATTATAAT
350600 TTTAATTTAGATTATAAT
1 TTTAATTTAGATTATAAT
350618 T
1 T
350619 ATATATAATT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 9 0.53
17 3 0.18
18 5 0.29
ACGTcount: A:0.37, C:0.00, G:0.03, T:0.60
Consensus pattern (18 bp):
TTTAATTTAGATTATAAT
Found at i:350732 original size:23 final size:23
Alignment explanation
Indices: 350700--350745 Score: 60
Period size: 22 Copynumber: 2.0 Consensus size: 23
350690 AATTTATAAT
350700 TTTTTAAAATATAA-AAATATTTTA
1 TTTTTAAAATA-AATAAA-ATTTTA
350724 TTTTT-AAATAAATAAAATTTTA
1 TTTTTAAAATAAATAAAATTTTA
350746 AAAATATAAT
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
22 8 0.38
23 8 0.38
24 5 0.24
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (23 bp):
TTTTTAAAATAAATAAAATTTTA
Found at i:351193 original size:36 final size:37
Alignment explanation
Indices: 351153--351235 Score: 123
Period size: 37 Copynumber: 2.3 Consensus size: 37
351143 GTATAAACGT
* * *
351153 TAAAAAATATTAAATTATT-TATATTTTAAAATTTAA
1 TAAAAAATATTAAATTATTAAATATTTTAAAAATAAA
351189 TAAAAAATATTAAATTATTAAATATTTTAAAAATAAA
1 TAAAAAATATTAAATTATTAAATATTTTAAAAATAAA
*
351226 TTAAAAATAT
1 TAAAAAATAT
351236 AATATTTTCA
Statistics
Matches: 42, Mismatches: 4, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
36 19 0.45
37 23 0.55
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (37 bp):
TAAAAAATATTAAATTATTAAATATTTTAAAAATAAA
Found at i:351446 original size:2 final size:2
Alignment explanation
Indices: 351441--351477 Score: 74
Period size: 2 Copynumber: 18.5 Consensus size: 2
351431 TCACCATAGT
351441 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
351478 GTCATAATGT
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 35 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:352331 original size:2 final size:2
Alignment explanation
Indices: 352324--352361 Score: 76
Period size: 2 Copynumber: 19.0 Consensus size: 2
352314 ATAACAAATT
352324 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
352362 ATAATAATAA
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 36 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:353563 original size:34 final size:34
Alignment explanation
Indices: 353427--353572 Score: 136
Period size: 34 Copynumber: 4.3 Consensus size: 34
353417 TTAATTAGTG
* * *
353427 TTGATTAAATG-GTGATTTGGTAGTTTACCATTG
1 TTGATTAAATGAGAGATTTGGTAGGTTACCATTA
* * ** *
353460 TTGATTAAATGGGTGATTTGGT-GGTTTGTCATTG
1 TTGATTAAATGAGAGATTTGGTAGG-TTACCATTA
* * *
353494 TTGACTAAAT-AGAAGATTTGGTAGTTTACCCTTA
1 TTGATTAAATGAG-AGATTTGGTAGGTTACCATTA
* *
353528 TTGATTAAATGAGAGATTTGGTAGGTTGCTATTA
1 TTGATTAAATGAGAGATTTGGTAGGTTACCATTA
353562 TTGATTAAATG
1 TTGATTAAATG
353573 GTGGTTTTTA
Statistics
Matches: 92, Mismatches: 16, Indels: 9
0.79 0.14 0.08
Matches are distributed among these distances:
33 13 0.14
34 76 0.83
35 3 0.03
ACGTcount: A:0.27, C:0.05, G:0.25, T:0.43
Consensus pattern (34 bp):
TTGATTAAATGAGAGATTTGGTAGGTTACCATTA
Found at i:353571 original size:68 final size:67
Alignment explanation
Indices: 353427--353572 Score: 179
Period size: 68 Copynumber: 2.2 Consensus size: 67
353417 TTAATTAGTG
** * * *
353427 TTGATTAAATGGTGATTTGGTAGTTTACCATTGTTGATTAAATGGGTGATTTGGTGGTTTGTCAT
1 TTGATTAAATGAAGATTTGGTAGTTTACCATTATTGATTAAATGAGAGATTTGGTGGTTTGTCAT
*
353492 TG
66 TA
* *
353494 TTGACTAAATAGAAGATTTGGTAGTTTACCCTTATTGATTAAATGAGAGATTTGGTAGG-TTG-C
1 TTGATTAAAT-GAAGATTTGGTAGTTTACCATTATTGATTAAATGAGAGATTTGGT-GGTTTGTC
353557 TATTA
64 -ATTA
353562 TTGATTAAATG
1 TTGATTAAATG
353573 GTGGTTTTTA
Statistics
Matches: 67, Mismatches: 9, Indels: 6
0.82 0.11 0.07
Matches are distributed among these distances:
67 11 0.16
68 54 0.81
69 2 0.03
ACGTcount: A:0.27, C:0.05, G:0.25, T:0.43
Consensus pattern (67 bp):
TTGATTAAATGAAGATTTGGTAGTTTACCATTATTGATTAAATGAGAGATTTGGTGGTTTGTCAT
TA
Found at i:353923 original size:19 final size:19
Alignment explanation
Indices: 353881--353917 Score: 65
Period size: 19 Copynumber: 1.9 Consensus size: 19
353871 GGTTGTCGAG
*
353881 GTACTATTCACGTATACAT
1 GTACTATTCAAGTATACAT
353900 GTACTATTCAAGTATACA
1 GTACTATTCAAGTATACA
353918 GTTACTGTAC
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.35, C:0.19, G:0.11, T:0.35
Consensus pattern (19 bp):
GTACTATTCAAGTATACAT
Found at i:356872 original size:51 final size:51
Alignment explanation
Indices: 356712--356882 Score: 207
Period size: 51 Copynumber: 3.3 Consensus size: 51
356702 GAAATAACGA
* *
356712 GGTTGGAGTATCCTCGATTGTGAAAAATTGGTATTTTTGAAAATAAAATCGG
1 GGTTGGAGTATCCCCGATTATGAAAAATTGGTA-TTTTGAAAATAAAATCGG
** * * * * *
356764 AATTGGAGTATCCCCGATTAAAGGAGAAATTGGTGTTGTGAAAATAAAACCGG
1 GGTTGGAGTATCCCCGATT--ATGAAAAATTGGTATTTTGAAAATAAAATCGG
* * *
356817 GGTTGGAGTATCCCCGATTATGAAAAATCGATATTTTGAAAATAAAGTCGG
1 GGTTGGAGTATCCCCGATTATGAAAAATTGGTATTTTGAAAATAAAATCGG
356868 GGTTGGAGTATCCCC
1 GGTTGGAGTATCCCC
356883 TCAGAAATAA
Statistics
Matches: 98, Mismatches: 19, Indels: 5
0.80 0.16 0.04
Matches are distributed among these distances:
51 39 0.40
52 16 0.16
53 33 0.34
54 10 0.10
ACGTcount: A:0.33, C:0.12, G:0.26, T:0.29
Consensus pattern (51 bp):
GGTTGGAGTATCCCCGATTATGAAAAATTGGTATTTTGAAAATAAAATCGG
Done.