Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Scaffold2220

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 12704
ACGTcount: A:0.34, C:0.14, G:0.17, T:0.35


Found at i:1417 original size:3 final size:3

Alignment explanation


    Indices: 1409--1449  Score: 82
    Period size: 3  Copynumber: 13.7  Consensus size: 3

       1399 GTGTTACCTT

                                                                  
       1409 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
          1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT

       1450 TGTTAATAAC


Statistics
Matches: 38,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   3   38  1.00

ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68


Consensus pattern (3 bp):   
TTA

Found at i:3617 original size:23 final size:23

Alignment explanation


    Indices: 3580--3624  Score: 63
    Period size: 23  Copynumber: 2.0  Consensus size: 23

       3570 TAAATCTCTT

                     **    *       
       3580 TTTTTTATTTGAATTCAAATATC
          1 TTTTTTATTCCAATTAAAATATC

                                  
       3603 TTTTTTATTCCAATTAAAATAT
          1 TTTTTTATTCCAATTAAAATAT

       3625 TAACAATGTT


Statistics
Matches: 19,  Mismatches: 3, Indels: 0
        0.86            0.14        0.00

Matches are distributed among these distances:
  23   19  1.00

ACGTcount: A:0.33, C:0.09, G:0.02, T:0.56


Consensus pattern (23 bp):   
TTTTTTATTCCAATTAAAATATC
Done.