Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold2221
Parameters: 2 7 7 80 10 50 1000
Length:  61651

Tables:   1   

This is table  1  of  1  ( 51 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4692--4725
16
2.1
17
88
5
52
64
0
0
35
0.94
6557--6611
22
2.5
22
85
11
76
52
0
0
47
1.00
11937--12057
52
2.3
52
97
0
224
28
18
18
34
1.94
11937--12077
52
2.7
51
90
4
212
30
17
18
33
1.94
12066--12090
13
1.9
13
100
0
50
36
16
16
32
1.90
12153--12177
13
1.9
13
100
0
50
32
16
16
36
1.90
13324--13354
14
2.2
14
94
0
53
67
0
0
32
0.91
13842--13899
18
3.5
17
74
25
61
44
0
1
53
1.10
14142--14191
21
2.4
21
100
0
100
36
18
14
32
1.90
15406--15463
26
2.3
25
91
5
91
25
15
25
32
1.95
19954--20011
26
2.3
25
91
5
91
25
15
25
32
1.95
20049--20115
23
3.0
23
64
4
55
28
1
17
52
1.54
20038--20124
45
1.9
45
93
4
149
27
1
16
55
1.48
20659--20722
26
2.4
27
76
12
69
40
3
1
54
1.25
25086--25138
26
2.0
26
96
0
97
37
3
5
52
1.43
27151--27194
2
22.0
2
100
0
88
50
0
0
50
1.00
27510--27581
16
4.5
15
76
13
56
52
0
0
47
1.00
27520--27594
27
2.7
29
79
12
93
50
0
0
49
1.00
29391--29467
37
2.1
37
95
0
136
42
18
10
28
1.83
31577--31630
21
2.7
19
85
5
72
37
12
16
33
1.87
31577--31659
19
4.6
19
75
20
79
34
13
16
34
1.88
31618--31642
13
1.9
13
100
0
50
36
16
16
32
1.90
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
31599--31669
32
2.2
32
94
0
124
32
12
18
36
1.88
35979--36023
2
22.5
2
100
0
90
51
0
0
48
1.00
40443--40484
21
2.0
22
85
4
59
54
0
4
40
1.21
40822--40847
2
13.0
2
100
0
52
50
0
0
50
1.00
41657--41698
21
2.0
22
85
4
59
40
4
0
54
1.21
48169--48208
2
20.0
2
100
0
80
0
50
0
50
1.00
48398--48429
2
16.0
2
100
0
64
50
0
0
50
1.00
49523--49552
14
2.1
14
93
0
51
60
0
0
40
0.97
49913--49956
21
2.1
21
87
8
63
27
2
0
70
0.99
50458--50505
2
24.0
2
100
0
96
50
0
0
50
1.00
52211--52244
6
5.5
6
86
6
50
0
35
0
64
0.94
52401--52432
2
16.0
2
100
0
64
50
0
0
50
1.00
52664--52703
11
3.7
11
90
3
55
60
0
0
40
0.97
52920--52958
2
19.5
2
100
0
78
0
48
0
51
1.00
54565--54605
17
2.4
18
84
11
52
41
0
2
56
1.13
56095--56138
22
2.1
21
84
12
56
65
2
15
15
1.36
56990--57047
21
2.7
21
83
2
71
36
1
13
48
1.53
57060--57147
20
4.3
19
70
11
59
32
3
6
56
1.42
57101--57203
21
4.9
21
72
3
73
35
3
7
52
1.49
57165--57299
52
2.6
51
83
9
150
40
4
3
51
1.40
57163--57308
10
14.1
10
74
11
116
41
4
3
51
1.38
57237--57330
21
4.5
21
77
15
81
38
4
3
54
1.36
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
57407--57776
21
18.0
20
69
14
98
35
7
8
48
1.62
57448--57525
40
2.0
40
84
5
104
37
6
7
48
1.57
57888--58066
21
8.5
21
74
4
119
35
3
7
53
1.49
58172--58234
9
6.9
8
81
15
54
39
1
1
57
1.18
58173--58241
18
3.7
18
83
12
86
42
1
1
55
1.18
59270--59321
26
2.0
26
88
7
79
44
15
7
32
1.75
59300--59334
18
2.0
17
94
5
61
45
5
2
45
1.41

Tables:   1

The End!