Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold2224
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 651981
ACGTcount: A:0.32, C:0.18, G:0.16, T:0.33
File 1 of 3
Found at i:3465 original size:13 final size:13
Alignment explanation
Indices: 3447--3484 Score: 58
Period size: 13 Copynumber: 2.9 Consensus size: 13
3437 ACATTTCACC
3447 ATGTATCGATACA
1 ATGTATCGATACA
3460 ATGTATCGATACA
1 ATGTATCGATACA
* *
3473 CTATATCGATAC
1 ATGTATCGATAC
3485 TGAGTGAGTT
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
13 23 1.00
ACGTcount: A:0.37, C:0.18, G:0.13, T:0.32
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:4192 original size:10 final size:10
Alignment explanation
Indices: 4177--4219 Score: 52
Period size: 10 Copynumber: 4.3 Consensus size: 10
4167 AACTCAACAA
*
4177 AAAAAGACAG
1 AAAAAGAAAG
4187 AAAAAGAAAG
1 AAAAAGAAAG
4197 AAAAA-AAAG
1 AAAAAGAAAG
*
4206 AGAACAGAAAG
1 A-AAAAGAAAG
4217 AAA
1 AAA
4220 GAAAATAAGG
Statistics
Matches: 29, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
9 5 0.17
10 19 0.66
11 5 0.17
ACGTcount: A:0.77, C:0.05, G:0.19, T:0.00
Consensus pattern (10 bp):
AAAAAGAAAG
Found at i:8495 original size:22 final size:22
Alignment explanation
Indices: 8470--8523 Score: 74
Period size: 22 Copynumber: 2.5 Consensus size: 22
8460 AATATTTATC
* *
8470 AAATAATTATTT-AATTTCTAG
1 AAATAATTATTTAAATTGCAAG
8491 AAAATAATTATTTAAATTGCAAG
1 -AAATAATTATTTAAATTGCAAG
8514 AAATAATTAT
1 AAATAATTAT
8524 CCGACTTAAA
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
22 22 0.76
23 7 0.24
ACGTcount: A:0.50, C:0.04, G:0.06, T:0.41
Consensus pattern (22 bp):
AAATAATTATTTAAATTGCAAG
Found at i:8691 original size:32 final size:32
Alignment explanation
Indices: 8641--8701 Score: 79
Period size: 32 Copynumber: 1.9 Consensus size: 32
8631 ACATTAAAAC
*
8641 ATCTCTAATAAAATTTAA-TGAATCTAATTTAT
1 ATCTCTAATAAAACTTAATTGAA-CTAATTTAT
* *
8673 ATCTTTAATAATACTTAATTGAACTAATT
1 ATCTCTAATAAAACTTAATTGAACTAATT
8702 CAATTAAGCA
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
32 21 0.84
33 4 0.16
ACGTcount: A:0.43, C:0.10, G:0.03, T:0.44
Consensus pattern (32 bp):
ATCTCTAATAAAACTTAATTGAACTAATTTAT
Found at i:11627 original size:31 final size:31
Alignment explanation
Indices: 11589--11661 Score: 87
Period size: 31 Copynumber: 2.4 Consensus size: 31
11579 ACTCCCTTTT
*
11589 AAGTATCGATGA-ACTTACCTAAAAATT-CTTA
1 AAGTATCGAT-ATACTTACCCAAAAATTGC-TA
*
11620 AAGTATCGATATATTTACCCAAAAATTGCTA
1 AAGTATCGATATACTTACCCAAAAATTGCTA
*
11651 ATGTATCGATA
1 AAGTATCGATA
11662 CAATATCCTA
Statistics
Matches: 37, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
30 1 0.03
31 35 0.95
32 1 0.03
ACGTcount: A:0.41, C:0.15, G:0.11, T:0.33
Consensus pattern (31 bp):
AAGTATCGATATACTTACCCAAAAATTGCTA
Found at i:12977 original size:13 final size:13
Alignment explanation
Indices: 12956--12987 Score: 55
Period size: 13 Copynumber: 2.5 Consensus size: 13
12946 TCAATATATT
*
12956 ATACTTTGTATCG
1 ATACATTGTATCG
12969 ATACATTGTATCG
1 ATACATTGTATCG
12982 ATACAT
1 ATACAT
12988 GTTTATTGTT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
13 18 1.00
ACGTcount: A:0.31, C:0.16, G:0.12, T:0.41
Consensus pattern (13 bp):
ATACATTGTATCG
Found at i:13094 original size:13 final size:13
Alignment explanation
Indices: 13076--13101 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
13066 TATGGGACAA
13076 TGTATCGATACAT
1 TGTATCGATACAT
13089 TGTATCGATACAT
1 TGTATCGATACAT
13102 GAACAATTGT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:13098 original size:33 final size:33
Alignment explanation
Indices: 13056--13122 Score: 100
Period size: 33 Copynumber: 2.0 Consensus size: 33
13046 CTAAGTGAAA
* *
13056 TGTATCGATATATGGGACAA-TGTATCGATACAT
1 TGTATCGATACAT-GAACAATTGTATCGATACAT
13089 TGTATCGATACATGAACAATTGTATCGATACAT
1 TGTATCGATACATGAACAATTGTATCGATACAT
13122 T
1 T
13123 ATGCCCAATG
Statistics
Matches: 31, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
32 5 0.16
33 26 0.84
ACGTcount: A:0.34, C:0.13, G:0.18, T:0.34
Consensus pattern (33 bp):
TGTATCGATACATGAACAATTGTATCGATACAT
Found at i:14723 original size:15 final size:15
Alignment explanation
Indices: 14703--14737 Score: 61
Period size: 15 Copynumber: 2.3 Consensus size: 15
14693 AACCATCAAA
14703 GATGATGAAGATAAT
1 GATGATGAAGATAAT
*
14718 GATGATGATGATAAT
1 GATGATGAAGATAAT
14733 GATGA
1 GATGA
14738 AGTTGACTCG
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
15 19 1.00
ACGTcount: A:0.43, C:0.00, G:0.29, T:0.29
Consensus pattern (15 bp):
GATGATGAAGATAAT
Found at i:18594 original size:20 final size:19
Alignment explanation
Indices: 18552--18605 Score: 76
Period size: 20 Copynumber: 2.9 Consensus size: 19
18542 ATTTCATATT
*
18552 TTTTCTTT-TTT-TTTTCT
1 TTTTCTTTCTTTCTTTTCA
18569 TTTTCTTTCTTTCTTCTTCA
1 TTTTCTTTCTTTCTT-TTCA
18589 TTTTCTTTCTTTCTTTT
1 TTTTCTTTCTTTCTTTT
18606 TTACCTAACT
Statistics
Matches: 33, Mismatches: 1, Indels: 4
0.87 0.03 0.11
Matches are distributed among these distances:
17 8 0.24
18 3 0.09
19 4 0.12
20 18 0.55
ACGTcount: A:0.02, C:0.19, G:0.00, T:0.80
Consensus pattern (19 bp):
TTTTCTTTCTTTCTTTTCA
Found at i:19922 original size:32 final size:31
Alignment explanation
Indices: 19822--20475 Score: 739
Period size: 32 Copynumber: 20.8 Consensus size: 31
19812 AAAATGGTGA
** * *
19822 TTTGAAAAGGGTTGCCATTGACTTGCGTGGGTT
1 TTTG-AAAGGGTTGCCACCGACTTGTGTGGG-C
* * ** *
19855 TTTAAAAGGGTTTCCACCGA-AAGTGTGGAC
1 TTTGAAAGGGTTGCCACCGACTTGTGTGGGC
* * * *
19885 TTTTGAAAGAGGTTCCCATCAACTTATGTGGGC
1 -TTTGAAAG-GGTTGCCACCGACTTGTGTGGGC
19918 TTTGAAAAGGGTTGCCACCGACTTGTGTGGGC
1 TTTG-AAAGGGTTGCCACCGACTTGTGTGGGC
* *
19950 TTTGAAATGGATTGCCATCGACTTGTGTGGGC
1 TTTGAAA-GGGTTGCCACCGACTTGTGTGGGC
* **
19982 TTTGAAATGGGTTACCACCGACTTGTGTGGTT
1 TTTGAAA-GGGTTGCCACCGACTTGTGTGGGC
* * * *
20014 TTTGAAATGTTTGCCATCAACTTGTGTGGGC
1 TTTGAAAGGGTTGCCACCGACTTGTGTGGGC
20045 TTTGAAAAGGGTTGCCACCGACTTGTGTGGGC
1 TTTG-AAAGGGTTGCCACCGACTTGTGTGGGC
20077 TTTGAAATGGGTTGCCACCGACTTGTGTGGGC
1 TTTGAAA-GGGTTGCCACCGACTTGTGTGGGC
*
20109 TTTGAAATGGGTTGCCACCGACTTGTATGGGC
1 TTTGAAA-GGGTTGCCACCGACTTGTGTGGGC
20141 TTTGAAAAGGGTTGCCACCGACTTGTGTGGGC
1 TTTG-AAAGGGTTGCCACCGACTTGTGTGGGC
*
20173 TTTGAAATGGGTTGCCACCGACTTATGTGGGC
1 TTTGAAA-GGGTTGCCACCGACTTGTGTGGGC
20205 TTTGAAATGGGTTGCCACCGACTTGTGTGGGC
1 TTTGAAA-GGGTTGCCACCGACTTGTGTGGGC
20237 TTTGAAATGGGTTGCCACCGACTTGTGTGGGC
1 TTTGAAA-GGGTTGCCACCGACTTGTGTGGGC
* *
20269 TTTGAAATGGGTTGCCACTGACTTGTATGGGC
1 TTTGAAA-GGGTTGCCACCGACTTGTGTGGGC
**
20301 TTTGAAATAG-TGCCACCGACTTGTGTGGGC
1 TTTGAAAGGGTTGCCACCGACTTGTGTGGGC
*
20331 TTTGAAAAGGGTTGCCACCGACTTGTATGGGC
1 TTTG-AAAGGGTTGCCACCGACTTGTGTGGGC
** * *
20363 TTTGAAATAG-TGCCATCGACTTGTGTGGTC
1 TTTGAAAGGGTTGCCACCGACTTGTGTGGGC
* ** *
20393 TTTTAAATAG-TGCCACCAACTTGTGTGGGC
1 TTTGAAAGGGTTGCCACCGACTTGTGTGGGC
**
20423 TTTGAAATAG-TGCCACCGAC-T-TGTGGGC
1 TTTGAAAGGGTTGCCACCGACTTGTGTGGGC
**
20451 TTTGAAATAG-TGCCACCGACTTGTG
1 TTTGAAAGGGTTGCCACCGACTTGTG
20476 GACTTAAAAA
Statistics
Matches: 545, Mismatches: 63, Indels: 29
0.86 0.10 0.05
Matches are distributed among these distances:
28 27 0.05
29 2 0.00
30 85 0.16
31 51 0.09
32 364 0.67
33 16 0.03
ACGTcount: A:0.20, C:0.18, G:0.30, T:0.32
Consensus pattern (31 bp):
TTTGAAAGGGTTGCCACCGACTTGTGTGGGC
Found at i:19930 original size:64 final size:64
Alignment explanation
Indices: 19822--20475 Score: 816
Period size: 64 Copynumber: 10.4 Consensus size: 64
19812 AAAATGGTGA
* ** * * * * * ** *
19822 TTTGAAAAGGGTTGCCATTGACTTGCGTGGGTTTTTAAAAGGGTTTCCACCGA-AAGTGTGGAC
1 TTTGAAATGGGTTGCCACCGACTTGTGTGGGCTTTGAAATGGGTTGCCACCGACTTGTGTGGGC
* * * * *
19885 TTTTGAAA-GAGGTTCCCATCAACTTATGTGGGCTTTGAAAAGGGTTGCCACCGACTTGTGTGGG
1 -TTTGAAATG-GGTTGCCACCGACTTGTGTGGGCTTTGAAATGGGTTGCCACCGACTTGTGTGGG
19949 C
64 C
* * * **
19950 TTTGAAATGGATTGCCATCGACTTGTGTGGGCTTTGAAATGGGTTACCACCGACTTGTGTGGTT
1 TTTGAAATGGGTTGCCACCGACTTGTGTGGGCTTTGAAATGGGTTGCCACCGACTTGTGTGGGC
* * * *
20014 TTTGAAAT-GTTTGCCATCAACTTGTGTGGGCTTTGAAAAGGGTTGCCACCGACTTGTGTGGGC
1 TTTGAAATGGGTTGCCACCGACTTGTGTGGGCTTTGAAATGGGTTGCCACCGACTTGTGTGGGC
*
20077 TTTGAAATGGGTTGCCACCGACTTGTGTGGGCTTTGAAATGGGTTGCCACCGACTTGTATGGGC
1 TTTGAAATGGGTTGCCACCGACTTGTGTGGGCTTTGAAATGGGTTGCCACCGACTTGTGTGGGC
* *
20141 TTTGAAAAGGGTTGCCACCGACTTGTGTGGGCTTTGAAATGGGTTGCCACCGACTTATGTGGGC
1 TTTGAAATGGGTTGCCACCGACTTGTGTGGGCTTTGAAATGGGTTGCCACCGACTTGTGTGGGC
20205 TTTGAAATGGGTTGCCACCGACTTGTGTGGGCTTTGAAATGGGTTGCCACCGACTTGTGTGGGC
1 TTTGAAATGGGTTGCCACCGACTTGTGTGGGCTTTGAAATGGGTTGCCACCGACTTGTGTGGGC
* * *
20269 TTTGAAATGGGTTGCCACTGACTTGTATGGGCTTTGAAAT-AG-TGCCACCGACTTGTGTGGGC
1 TTTGAAATGGGTTGCCACCGACTTGTGTGGGCTTTGAAATGGGTTGCCACCGACTTGTGTGGGC
* * * * *
20331 TTTGAAAAGGGTTGCCACCGACTTGTATGGGCTTTGAAAT-AG-TGCCATCGACTTGTGTGGTC
1 TTTGAAATGGGTTGCCACCGACTTGTGTGGGCTTTGAAATGGGTTGCCACCGACTTGTGTGGGC
* * * *
20393 TTTTAAAT-AG-TGCCACCAACTTGTGTGGGCTTTGAAAT-AG-TGCCACCGAC-T-TGTGGGC
1 TTTGAAATGGGTTGCCACCGACTTGTGTGGGCTTTGAAATGGGTTGCCACCGACTTGTGTGGGC
*
20451 TTTGAAAT-AG-TGCCACCGACTTGTG
1 TTTGAAATGGGTTGCCACCGACTTGTG
20476 GACTTAAAAA
Statistics
Matches: 535, Mismatches: 51, Indels: 14
0.89 0.09 0.02
Matches are distributed among these distances:
58 29 0.05
59 1 0.00
60 37 0.07
61 1 0.00
62 84 0.16
63 59 0.11
64 316 0.59
65 8 0.01
ACGTcount: A:0.20, C:0.18, G:0.30, T:0.32
Consensus pattern (64 bp):
TTTGAAATGGGTTGCCACCGACTTGTGTGGGCTTTGAAATGGGTTGCCACCGACTTGTGTGGGC
Found at i:20555 original size:27 final size:27
Alignment explanation
Indices: 20460--20886 Score: 611
Period size: 27 Copynumber: 15.7 Consensus size: 27
20450 CTTTGAAATA
* *
20460 GTGCCACCGACTTGTGGACTTAAAAAGG
1 GTGCCACGGAGTTGTGGACTT-AAAAGG
* ** *
20488 GTGCGACAAAGTTGTGAACTTAAAAGG
1 GTGCCACGGAGTTGTGGACTTAAAAGG
20515 GATGCCACGGAGTTGTGGACTTAAAAGG
1 G-TGCCACGGAGTTGTGGACTTAAAAGG
20543 GTGCCACGGAGTTGTGGACTTAAAAGG
1 GTGCCACGGAGTTGTGGACTTAAAAGG
*
20570 GTGCCACGGAGTTGTGGATTTAAAAGG
1 GTGCCACGGAGTTGTGGACTTAAAAGG
** * *
20597 GTGCCATAGAGTTTTGAACTTAAAAGG
1 GTGCCACGGAGTTGTGGACTTAAAAGG
20624 GATGCCACGGAGTTGTGGACTTAAAAGG
1 G-TGCCACGGAGTTGTGGACTTAAAAGG
20652 GTGCCACGGAGTTGTGGACTTAAAAGG
1 GTGCCACGGAGTTGTGGACTTAAAAGG
*
20679 GTGCCACGGAGTTGTGGACTTAAAACG
1 GTGCCACGGAGTTGTGGACTTAAAAGG
* ** *
20706 ATGCCATAGAGTTGTGGACTTAAGAGG
1 GTGCCACGGAGTTGTGGACTTAAAAGG
*
20733 GTGCCACGGAGTTGTGGACTTAAAAGT
1 GTGCCACGGAGTTGTGGACTTAAAAGG
*
20760 GTGCCACGGAGTTGTGGACTTAAAAGA
1 GTGCCACGGAGTTGTGGACTTAAAAGG
*
20787 GTGCCACGGAGTTATGGACTTAAAAGG
1 GTGCCACGGAGTTGTGGACTTAAAAGG
*
20814 GTACCACGGAGTTGTGGACTTTAAAAGG
1 GTGCCACGGAGTTGTGGAC-TTAAAAGG
*
20842 GTGCCACGGAGTTGTGGACTTAAAAAG
1 GTGCCACGGAGTTGTGGACTTAAAAGG
* *
20869 GTGCCACAGACTTGTGGA
1 GTGCCACGGAGTTGTGGA
20887 GTTTAAAGAG
Statistics
Matches: 357, Mismatches: 39, Indels: 7
0.89 0.10 0.02
Matches are distributed among these distances:
27 269 0.75
28 88 0.25
ACGTcount: A:0.29, C:0.15, G:0.33, T:0.23
Consensus pattern (27 bp):
GTGCCACGGAGTTGTGGACTTAAAAGG
Found at i:20620 original size:109 final size:108
Alignment explanation
Indices: 20460--20886 Score: 629
Period size: 109 Copynumber: 3.9 Consensus size: 108
20450 CTTTGAAATA
* * * *
20460 GTGCCACCGACTTGTGGACTTAAAAAGGGTGCGACAAAGTTGTGAACTTAAAAGGGATGCCACGG
1 GTGCCACGGAGTTGTGGACTT-AAAAGGGTGCCACAGAGTTGTGAACTTAAAAGGG-TGCCACGG
20525 AGTTGTGGACTTAAAAGGGTGCCACGGAGTTGTGGACTTAAAAGG
64 AGTTGTGGACTTAAAAGGGTGCCACGGAGTTGTGGACTTAAAAGG
* * *
20570 GTGCCACGGAGTTGTGGATTTAAAAGGGTGCCATAGAGTTTTGAACTTAAAAGGGATGCCACGGA
1 GTGCCACGGAGTTGTGGACTTAAAAGGGTGCCACAGAGTTGTGAACTTAAAAGGG-TGCCACGGA
20635 GTTGTGGACTTAAAAGGGTGCCACGGAGTTGTGGACTTAAAAGG
65 GTTGTGGACTTAAAAGGGTGCCACGGAGTTGTGGACTTAAAAGG
* * * * *
20679 GTGCCACGGAGTTGTGGACTTAAAACGATGCCATAGAGTTGTGGACTTAAGAGGGTGCCACGGAG
1 GTGCCACGGAGTTGTGGACTTAAAAGGGTGCCACAGAGTTGTGAACTTAAAAGGGTGCCACGGAG
* *
20744 TTGTGGACTTAAAAGTGTGCCACGGAGTTGTGGACTTAAAAGA
66 TTGTGGACTTAAAAGGGTGCCACGGAGTTGTGGACTTAAAAGG
* * * *
20787 GTGCCACGGAGTTATGGACTTAAAAGGGTACCACGGAGTTGTGGACTTTAAAAGGGTGCCACGGA
1 GTGCCACGGAGTTGTGGACTTAAAAGGGTGCCACAGAGTTGTGAAC-TTAAAAGGGTGCCACGGA
* * *
20852 GTTGTGGACTTAAAAAGGTGCCACAGACTTGTGGA
65 GTTGTGGACTTAAAAGGGTGCCACGGAGTTGTGGA
20887 GTTTAAAGAG
Statistics
Matches: 290, Mismatches: 26, Indels: 3
0.91 0.08 0.01
Matches are distributed among these distances:
108 91 0.31
109 181 0.62
110 18 0.06
ACGTcount: A:0.29, C:0.15, G:0.33, T:0.23
Consensus pattern (108 bp):
GTGCCACGGAGTTGTGGACTTAAAAGGGTGCCACAGAGTTGTGAACTTAAAAGGGTGCCACGGAG
TTGTGGACTTAAAAGGGTGCCACGGAGTTGTGGACTTAAAAGG
Found at i:33953 original size:475 final size:476
Alignment explanation
Indices: 32146--34541 Score: 3166
Period size: 475 Copynumber: 5.0 Consensus size: 476
32136 GTTGTCATCA
* *
32146 CACCATAAACGTAGTCTTCTCATAAGG-TACACGATATTGATGATTTGGTTTTGAAAGAAAGGCT
1 CACCATAAACATAGTCTTCTCATAAGGATACACGATATTGATGCTTTGGTTTTGAAAGAAAGGCT
* * *
32210 TTCTTCCCCCCAATTTTTGTAAAGTCTGACTTCATGCCGT-AAATGAGACAAACATTGATTCTAA
66 TTCTTCCCCCCAATTTTTGTAAAGTCTGACTTCGT-CCCTCAAATGAGACAAACATTGATTCTAG
** *
32274 TAATGATCTTCATTCATTTTGTGATTATTCACAATAAACACATTCT-CA-A-TAGGATAAATGTT
130 TAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCACATTAGGATAAATGTT
** * *
32336 ATCAACGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTTATTTACCTTAAAATCAAAATTCA
195 ATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTG-CCTTATTTACCTTAAAATCAAAGTTCA
* *
32401 TCCCTTAAATAAGGCAAGCATCGATTCTCATAATAGTCTCTATTCTTTTCAAGATTGGGAACCAA
259 TCCCTTAAATAAGGCAAGCATCGATTCTCGTAATAGTCTCCATTCTTTTCAAGATTGGGAACCAA
* * * *
32466 AAACACAATCCCTTCATTTGGATACATGACATTGATGCTATGGTTATGCAAAAAAAGCTTTTCTT
324 AAACACATTCCCTTCATTAGGATACAAGACATTGATGCTATGGTGATGCAAAAAAAGCTTTTCTT
* * *
32531 ACCATCGTCTTTGATAGAATCAAAGTTTGACTCTTAAATAAGACAAACATA-AAGAGTCATACTA
389 ACCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAAC-TAGAAGAGTCATACTA
32595 ATCCCTGTTCTTTTCAGGATTAGG
453 ATCCCTGTTCTTTTCAGGATTAGG
* * *** * * *
32619 CACTATCAGTGTAGTCTTCTCATAAGGAT-GACGATATTGATGCTTTCGTTTTCAAAGAAAGGC-
1 CACCATAAACATAGTCTTCTCATAAGGATACACGATATTGATGCTTTGGTTTTGAAAGAAAGGCT
* * *
32682 TTCTTCCCCCCAATTTTTGTAAAGTCTGACTTCGTTCCTCAAATGTGACAAACTTTGATTCTAGT
66 TTCTTCCCCCCAATTTTTGTAAAGTCTGACTTCGTCCCTCAAATGAGACAAACATTGATTCTAGT
* * * *
32747 AATGCTCTTCATTCATTTTGAGATTAAGCACTATAAACACATTCTCCTCATTAGGAT-AATGTT-
131 AATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCACATTAGGATAAATGTTA
* *
32810 TTGATGATTTTCTTTTGCACTGGAAATCTTTTCTTTGCCATATTTACTTTAAAATCAAAGTTCAT
196 TTGATGATTTTCTTTTGCA-TGGAAATCTTTTCTTTGCCTTATTTACCTTAAAATCAAAGTTCAT
* * * *
32875 CCCTTAAATAAGGCATGCATCGCTTCTCGTAACAGTCTCCATTCTTTTC-AGCATTAGGAACCAA
260 CCCTTAAATAAGGCAAGCATCGATTCTCGTAATAGTCTCCATTCTTTTCAAG-ATTGGGAACCAA
* *
32939 AAATACATTCCCTTCATTAGGATACAAGACATTGATGCCTA-GGTGAAGCAAAAAAAGCTTTTCT
324 AAACACATTCCCTTCATTAGGATACAAGACATTGATG-CTATGGTGATGCAAAAAAAGCTTTTCT
* * *
33003 TACCACCGTTATTGATAGAATCAAAGTTCGTTTCTTAAATAAGACAAAC-ATGAAGAGTCATACT
388 TACCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACTA-GAAGAGTCATACT
* * *
33067 AATCCCTATTCTTGTCATGATTAGG
452 AATCCCTGTTCTTTTCAGGATTAGG
* * * * * *
33092 CACCATAACCATAGTCTTCTCTTAAGGATACATGATATTGATGCTTTGGTTTCGCAAGAAAAGCT
1 CACCATAAACATAGTCTTCTCATAAGGATACACGATATTGATGCTTTGGTTTTGAAAGAAAGGCT
* * *
33157 TTCTTCCCACCAATTTTTGTAAAGTTTGACTTCGTCCCTCTAATGAGACAAACATTGATTCTAGT
66 TTCTTCCCCCCAATTTTTGTAAAGTCTGACTTCGTCCCTCAAATGAGACAAACATTGATTCTAGT
* * * * *
33222 AATGCTCTTCATTCATTTTATGATTAGGCACTATAAACACATTCTCCATATTAGGGATAAAGGAT
131 AATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCACATTA-GGATAAATGTT
* * * *
33287 AATGATGATTTTCTTTTACATGAAAATCTTTTGTTTGCCTTATTTACCTTAAAATCAAAGTTCAT
195 ATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCTTATTTACCTTAAAATCAAAGTTCAT
* * *
33352 CCCTTAAAAAAGGCAAGCATCGATTCTCGTAATAGTCTCCATTTTTTTCAAGATTGGGAGCCAAA
260 CCCTTAAATAAGGCAAGCATCGATTCTCGTAATAGTCTCCATTCTTTTCAAGATTGGGAACCAAA
* * * * *
33417 AACACATGCCCTTCATGAGGATACAAGACATTGATACTTTGGTGATGCAAAAAGAGCTTTTCTTA
325 AACACATTCCCTTCATTAGGATACAAGACATTGATGCTATGGTGATGCAAAAAAAGCTTTTCTTA
* * *
33482 CCACCGTTTTTGATCGAATCAAAGTTTGTCTCTTAAATAAGAGAAACTAGAATAGTCATACTAAT
390 CCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACTAGAAGAGTCATACTAAT
* *
33547 CCTTGTTCTTTTCAGGATTAGA
455 CCCTGTTCTTTTCAGGATTAGG
* *
33569 CACCATAAACATAGTTTTCTCATAAGGATACATGATATTGATGCTTTGGTTTTGAAAGAAAGGC-
1 CACCATAAACATAGTCTTCTCATAAGGATACACGATATTGATGCTTTGGTTTTGAAAGAAAGGCT
* *
33633 TTCTTCCCCCCAATTTTTGTAAAGTCTGACTTCGTGCCTCAAATGTA-ATAAACATTGATTCTAG
66 TTCTTCCCCCCAATTTTTGTAAAGTCTGACTTCGTCCCTCAAATG-AGACAAACATTGATTCTAG
* * * * *
33697 TAATGATCTTCATTTATTTTGGGATTAGCCA-TGACAAACACATTCTCCACATTGGGATAAATGT
130 TAATGATCTTCATTCATTTTGTGATTAGGCACT-ATAAACACATTCTCCACATTAGGATAAATGT
* * *
33761 TATTGATGATTTTCTTTTGCATTGGAAATCTTTTTTTTGCCTTATTTTCCTTAAAATC-AATTTC
194 TATTGATGATTTTCTTTTGCA-TGGAAATCTTTTCTTTGCCTTATTTACCTTAAAATCAAAGTTC
* * * * *
33825 TTCCCTTAAATAAGGCAATCATCGATTCTCATAATAGTTTCCATTCTTTTCAAGATTGGGAACTA
258 ATCCCTTAAATAAGGCAAGCATCGATTCTCGTAATAGTCTCCATTCTTTTCAAGATTGGGAACCA
* * * *
33890 AAAACACATTCCCTCCATTAGGATACATGACATTGATGCTATGGTGACGCAAAAAATGCTTTTCT
323 AAAACACATTCCCTTCATTAGGATACAAGACATTGATGCTATGGTGATGCAAAAAAAGCTTTTCT
* * * * *
33955 TACCACCGTTTTTGTTAGAATCAAAGTTTATTTCTTAAATTAGACAAA-TATTAAGAGTCATACT
388 TACCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACTA-GAAGAGTCATACT
* * * *
34019 AATCCATATTCTTTTCACGATTGGG
452 AATCCCTGTTCTTTTCAGGATTAGG
** * * *
34044 CACCAT-AACATAGTCTTCTTTTAAGGATACACGATATTGATGTTTTGG-TTTCACAAGAAAAGC
1 CACCATAAACATAGTCTTCTCATAAGGATACACGATATTGATGCTTTGGTTTTGA-AAGAAAGGC
* *
34107 TTTCTTCCCACCAATTTTTGTAAAGTCTGACTTCATCCCTCAAATGAGACAAACATTGATTCTAG
65 TTTCTTCCCCCCAATTTTTGTAAAGTCTGACTTCGTCCCTCAAATGAGACAAACATTGATTCTAG
* * *
34172 TAATGATCTTTATTCATTTTGTGATTAGGTACTATAAACACATTCTCCACATTAGGATAAAAG--
130 TAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCACATTAGGATAAATGTT
* * *** * *
34235 A-TAATGATTTGCTTTTGCACAAAAATCTTTTGTTTACTACCTTATTTACCTTAAAATCAAAGTT
195 ATTGATGATTTTCTTTTGCATGGAAATCTTTT-CTT--TGCCTTATTTACCTTAAAATCAAAGTT
* ** * * * *
34299 CATCCCTTAAATAAGGCAAGCATTGATTCTCGTAGCAATCTACGTTCTTTTCAAGATTGAGAACC
257 CATCCCTTAAATAAGGCAAGCATCGATTCTCGTAATAGTCTCCATTCTTTTCAAGATTGGGAACC
* * *
34364 AAAAACACATTCCTTTCATTTGGATACAAGACATTGATGC-ATTGTTGATGCAAAAAAAGCTTTT
322 AAAAACACATTCCCTTCATTAGGATACAAGACATTGATGCTA-TGGTGATGCAAAAAAAGCTTTT
* * * * * *
34428 CTTGCCACTGTTTTTGATAGATTCAAAGTTTGTCTCTTAAATAAGAGAAATTAGAATAGTCATAC
386 CTTACCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACTAGAAGAGTCATAC
34493 TAATCCCTGTTCTTTTCAGGATTAGG
451 TAATCCCTGTTCTTTTCAGGATTAGG
*
34519 CACCATAAACGTAGTCTTCTCAT
1 CACCATAAACATAGTCTTCTCAT
34542 TCCCCCTAAT
Statistics
Matches: 1666, Mismatches: 224, Indels: 63
0.85 0.11 0.03
Matches are distributed among these distances:
471 12 0.01
472 117 0.07
473 309 0.19
474 123 0.07
475 641 0.38
476 156 0.09
477 288 0.17
478 20 0.01
ACGTcount: A:0.31, C:0.19, G:0.14, T:0.36
Consensus pattern (476 bp):
CACCATAAACATAGTCTTCTCATAAGGATACACGATATTGATGCTTTGGTTTTGAAAGAAAGGCT
TTCTTCCCCCCAATTTTTGTAAAGTCTGACTTCGTCCCTCAAATGAGACAAACATTGATTCTAGT
AATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCACATTAGGATAAATGTTA
TTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCTTATTTACCTTAAAATCAAAGTTCATC
CCTTAAATAAGGCAAGCATCGATTCTCGTAATAGTCTCCATTCTTTTCAAGATTGGGAACCAAAA
ACACATTCCCTTCATTAGGATACAAGACATTGATGCTATGGTGATGCAAAAAAAGCTTTTCTTAC
CACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACTAGAAGAGTCATACTAATC
CCTGTTCTTTTCAGGATTAGG
Found at i:34937 original size:429 final size:429
Alignment explanation
Indices: 34111--36403 Score: 1491
Period size: 475 Copynumber: 5.0 Consensus size: 429
34101 AAAAGCTTTC
34111 TTCCCACCAATTTTTGTAAAGTCTGACTTCATCCCTCAAATGAGACAAACATTGATTCTAGTAAT
1 TTCCCACCAATTTTTGTAAAGTCTGACTTCATCCCTCAAATGAGACAAACATTGATTCTAGTAAT
* *
34176 GATCTTTATTCATTTTGTGATTAGGTACTATAAACACATTCTCCACATTAGGATAAAAGATAATG
66 GATCTTCATTCATTTTCTGATTAGGTACTATAAACACATTCTCCACATTAGGATAAAAGATAATG
*
34241 ATTTGCTTTTGCACAAAAATCTTTTGTTTACTACCTTATTTACCTTAAAATCAAAGTTCATCCCT
131 ATTTGCTTTTGCACAAAAATCTTTTCTTTAC-ACCTTATTTACCTTAAAATCAAAGTTCATCCCT
* * *
34306 TAAATAAGGCAAGCATTGATTCTCGTAGCAATCTACGTTCTTTTCAAGATTGAGAACCAAAAACA
195 TAAATAAGGCAAGCATCGATTCTCGTAACAATCTACATTCTTTTCAAGATTGAGAACCAAAAACA
* * * * * *
34371 CATTCCTTTCATTTGGATACAAGACATTGATGCATTGTTGATGCAAAAAAAGCTTTTCTTGCCAC
260 CATTCCCTTCATTAGGATACAAGACATTGATGCATTGGTGACGCAAAAAAAGATTTTCTTACCAC
* * * * * *
34436 TGTTTTTGATAGATTCAAAGTTTGTCTCTTAAATAAGAGAAATTAGAATAGTCATACTAATCCCT
325 TGTTTTTGATAGAATCAAAGTTTCTCTCCTAAATAAGACAAAATAGAAGAGTCATACTAATCCCT
* ** *
34501 GTTCTTTTCAGGATTAGGCACCATAAACGTAGTCTTCTCA
390 ATTCTTTTCACAATTAGGCACCATAAACATAGTCTTCTCA
** *
34541 TTCCC-CCTAATTTTTGTAAAGTCTGACTTTGTGCCTCAAATGAGACAAACATTGATTCTAGTAA
1 TTCCCACC-AATTTTTGTAAAGTCTGACTTCATCCCTCAAATGAGACAAACATTGATTCTAGTAA
* * *
34605 TTATCTTCATTCATTTTCTGATTAGGCT-CTATAAACACATTCTCCTCATTAGGATAAATGTTAT
65 TGATCTTCATTCATTTTCTGATTAGG-TACTATAAACACATTCTCCACATTAGGATAAAAG--A-
* * *** *
34669 TGATGACTTT-TTTTTGCGTGAAAATCTTTTCTTTGC-CC-TATTTACCTTAAAATCAAAG-TCA
126 TAATGA-TTTGCTTTTGCACAAAAATCTTTTCTTTACACCTTATTTACCTTAAAATCAAAGTTCA
* * * * * *
34730 TCCCTTAAATAAGGCAAGCATCGATTCTCGTAATAGTGTCCATTCTTTTCAAGATTGGGAATCAA
190 TCCCTTAAATAAGGCAAGCATCGATTCTCGTAACAATCTACATTCTTTTCAAGATTGAGAACCAA
* *
34795 AAACACGTTCCCTTCATTAGGATACATA-ACATTGATGCCA-TGGTGACGCCAAAAAAGATTTTC
255 AAACACATTCCCTTCATTAGGATACA-AGACATTGATG-CATTGGTGACGCAAAAAAAGATTTTC
* *
34858 TTACCACTGTTTTTGATAGAATCAAAGTTTCTCTCCTAAATTAGACAAACAT-GAAGGGTCATAC
318 TTACCACTGTTTTTGATAGAATCAAAGTTTCTCTCCTAAATAAGACAAA-ATAGAAGAGTCATAC
* *
34922 TATTCCCTATTCTTTTCACAATTAGGCACCATAAACATAGTGTTCTCA
382 TAATCCCTATTCTTTTCACAATTAGGCACCATAAACATAGTCTTCTCA
**** ** **
34970 TAAGGATATAGGTTATTGAAGCTTTGGTTTCACAAGAAAGGCTTTTTTCCCACCAAATTTCGTAA
1 TTCCCA-CCA----ATT-----TTT-G--T------AAA-G------TCTGA-C--------T--
* * **
35035 AGTCTAACTTCGTGCCTCTAATGAGAC-AACATTGGATTCTAGTAATGACCTTCATTCATTTTGG
29 --TC--A--TC---CCTCAAATGAGACAAACATT-GATTCTAGTAATGATCTTCATTCATTTTCT
* **
35099 GATTAGGCACTATAAACACATTCTCCACATTAGGATAAAAGATAATAATGATTT-CTTTTGCATG
84 GATTAGGTACTATAAACACATTCTCCACATTAGGATAAAAG---ATAATGATTTGCTTTTGCACA
* *
35163 GAAATCTTTTC-TT-CGCCTTATTTACCTTAAAATCAAAGTTCATCCCTTAAATAAGGCAAGCAT
146 AAAATCTTTTCTTTACACCTTATTTACCTTAAAATCAAAGTTCATCCCTTAAATAAGGCAAGCAT
* * * * * **
35226 CGATTCTCGTAATAGTGTCCATTCTTTTCAAGATTGGGAATTAAAAACACATTCCCTTCATTAGG
211 CGATTCTCGTAACAATCTACATTCTTTTCAAGATTGAGAACCAAAAACACATTCCCTTCATTAGG
* * *
35291 ATACATGACATTGATGC-TATGGTGACGCCAAAAAAGATTTTCTTACCATTGTTTTTGATAGAAT
276 ATACAAGACATTGATGCAT-TGGTGACGCAAAAAAAGATTTTCTTACCACTGTTTTTGATAGAAT
* * * *
35355 CAAAGTTTCTCTCCTAAATTAGACAAACAT-GAAGGGTCATACTATTCCCTATTCTTTTCACGAT
340 CAAAGTTTCTCTCCTAAATAAGACAAA-ATAGAAGAGTCATACTAATCCCTATTCTTTTCACAAT
*
35419 TAGGCACCATAAACATAGTGTTCTCA
404 TAGGCACCATAAACATAGTCTTCTCA
* *
35445 TAAGGAT-ACACGATATTGATGCTTTGGTTTCACAAGAAAGGCTTTTTTCCCACCAAATTTCGTA
1 T-----TCCCACCA-A-T--T--TTT-G--T------AAA-G------------------TC-T-
* *
35509 AAGTCTAACTTCGTGCCTCAAATGAGAC-AACATTGGATTCTAGTAATGATTACCTTCATTCATT
25 --G----ACTTCATCCCTCAAATGAGACAAACATT-GATTCTAGTAATGA-T--CTTCATTCATT
** * *
35573 TTGGGATTAGGCACTATAAACACATTCTCCACATTAGGATAAAAGATAATGATGATTTCTTTTGC
80 TTCTGATTAGGTACTATAAACACATTCTCCACATTAGGATAAAAGATAATGAT--TTGCTTTTGC
*** * *** * * *
35638 ATGGAAATCTTTTTTTTTTTTGCCTTATCTACCTTAAAATCGAAGTCCATCCCTTAAATAAGGCA
143 ACAAAAATC--TTTTCTTTACACCTTATTTACCTTAAAATCAAAGTTCATCCCTTAAATAAGGCA
* * * *
35703 AGCATCGATTCTCATAACAGTCTCCATTCTTTTCAAGATTG-GCAACCAATAACACATTCCCTTC
206 AGCATCGATTCTCGTAACAATCTACATTCTTTTCAAGATTGAG-AACCAAAAACACATTCCCTTC
* * * * * * * * *
35767 ATGAGCATACAAGACACTGATACTTTGATGACGCAAAAAAAGCTTGTCTTACCACCGTTTTTGAT
270 ATTAGGATACAAGACATTGATGCATTGGTGACGCAAAAAAAGATTTTCTTACCACTGTTTTTGAT
* * * * ** *
35832 AGAATCAAAGTTTGTCTCTTAAATAAGAGAAACTAGAATTGTCAAACTAATCCCTATTCTTTTCA
335 AGAATCAAAGTTTCTCTCCTAAATAAGACAAAATAGAAGAGTCATACTAATCCCTATTCTTTTCA
* * *
35897 -ACATTAGGCCCCATAAACGTAGTCTTCTTGTAA
400 CA-ATTAGGCACCATAAACATAGTCTTC---TCA
* * *
35930 GGAT-ACACGATATTGATACTTTGGTTTTGAAAGAAAAGCTTTCTTCCCCCCAATTTTTGTAAAG
1 --TTCCCACCA-A-T--T--TTT-G---T------AAAG--------------------------
* * *
35994 TCTGACTTCATGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGAT
22 TCTGACTTCATCCCTCAAATGAGACAAACATTGATTCTAGTAATGATCTTCATTCATTTTCTGAT
* * * ***
36059 TAGGCACTATAAACACATTCTACACATTAGGATAAAAGATTATGATGATTTTCTTTTGCATGGAA
87 TAGGTACTATAAACACATTCTCCACATTAGGATAAAAGA-TA--ATGATTTGCTTTTGCACAAAA
* * * *
36124 ATATTTTCTTT--GCCATATTTACCTTAAAATCGAAGTTCATCCCTTAAATAAGGCAAGCATCGA
149 ATCTTTTCTTTACACCTTATTTACCTTAAAATCAAAGTTCATCCCTTAAATAAGGCAAGCATCGA
* * *
36187 TTCTCGTAACAGTCTCCATTCTTTTCAAGATTGGGAACCAAAAACACATTCCCTTCATTAGGATA
214 TTCTCGTAACAATCTACATTCTTTTCAAGATTGAGAACCAAAAACACATTCCCTTCATTAGGATA
* * * * * * *
36252 CATGACGTTGATGCCTTGGTGACGCAGAAAAAGCTTTTCTTACCGCCGTTTTTGATAGAATCAAA
279 CAAGACATTGATGCATTGGTGACGCAAAAAAAGATTTTCTTACCACTGTTTTTGATAGAATCAAA
* * * * * * ***
36317 GTTTGTCTCTTAAATCATG-GAAACTAGAATAGTCATACTAATCCCTATTCTTTTCAGGGTTAGG
344 GTTTCTCTCCTAAAT-AAGACAAAATAGAAGAGTCATACTAATCCCTATTCTTTTCACAATTAGG
* *
36381 CACTATAAACGTAGTCTTCTCA
408 CACCATAAACATAGTCTTCTCA
36403 T
1 T
36404 AAGGATACAC
Statistics
Matches: 1558, Mismatches: 177, Indels: 215
0.80 0.09 0.11
Matches are distributed among these distances:
429 208 0.13
430 136 0.09
431 3 0.00
432 1 0.00
433 25 0.02
434 6 0.00
439 3 0.00
440 1 0.00
442 1 0.00
448 3 0.00
449 1 0.00
455 3 0.00
456 1 0.00
464 1 0.00
468 1 0.00
472 2 0.00
473 6 0.00
474 48 0.03
475 379 0.24
476 239 0.15
477 5 0.00
478 82 0.05
479 56 0.04
480 24 0.02
481 5 0.00
482 287 0.18
483 14 0.01
485 2 0.00
486 2 0.00
487 5 0.00
489 1 0.00
490 5 0.00
494 1 0.00
495 1 0.00
ACGTcount: A:0.32, C:0.19, G:0.14, T:0.35
Consensus pattern (429 bp):
TTCCCACCAATTTTTGTAAAGTCTGACTTCATCCCTCAAATGAGACAAACATTGATTCTAGTAAT
GATCTTCATTCATTTTCTGATTAGGTACTATAAACACATTCTCCACATTAGGATAAAAGATAATG
ATTTGCTTTTGCACAAAAATCTTTTCTTTACACCTTATTTACCTTAAAATCAAAGTTCATCCCTT
AAATAAGGCAAGCATCGATTCTCGTAACAATCTACATTCTTTTCAAGATTGAGAACCAAAAACAC
ATTCCCTTCATTAGGATACAAGACATTGATGCATTGGTGACGCAAAAAAAGATTTTCTTACCACT
GTTTTTGATAGAATCAAAGTTTCTCTCCTAAATAAGACAAAATAGAAGAGTCATACTAATCCCTA
TTCTTTTCACAATTAGGCACCATAAACATAGTCTTCTCA
Found at i:35396 original size:904 final size:901
Alignment explanation
Indices: 32685--36403 Score: 3718
Period size: 904 Copynumber: 4.0 Consensus size: 901
32675 GAAAGGCTTC
* * * *
32685 TTCCCCCCAATTTTTGTAAAGTCTGACTTCGTTCCTCAAATGTGACAAACTTTGATTCTAGTAAT
1 TTCCCCCAAATTTTTGTAAAGTCTGACTTCGTGCCTCAAATGAGACAAACATTGATTCTAGTAAT
** * * *
32750 GCTCTTCATTCATTTTGAGATTAAGCACTATAAACACATTCTCCTCATTAGGAT-AATGTT-TTG
66 TATCTTCATTCATTTTGGGATTAGGC-CTATAAACACATTCTCCACATTAGGATAAATGTTATTG
* * *
32813 ATGATTTTCTTTTGCACTGGAAATCTTTTCTTTGCCATATTTACTTTAAAATCAAAGTTCATCCC
130 ATGATTTT-TTTTGCA-TGGAAATCTTTTTTTTGCCTTATTTACCTTAAAATCAAAG-TCATCCC
* * * * *
32878 TTAAATAAGGCATGCATCGCTTCTCGTAACAGTCTCCATTCTTTTC-AGCATTAGGAACCAAAAA
192 TTAAATAAGGCAAGCATCGATTCTCATAATAGTCTCCATTCTTTTCAAG-ATTGGGAA-CAAAAA
* * *
32942 TACATTCCCTTCATTAGGATACA-AGACATTGATGCCTA-GGTGAAGCAAAAAAAGCTTTTCTTA
255 CACATTCCCTTCATTAGGATACATA-ACATTGATG-CTATGGTGACGCCAAAAAAGCTTTTCTTA
* ** * *
33005 CCACCGTTATTGATAGAATCAAAGTTCGTTTCTTAAATAAGACAAACATGAAGAGTCATACTAAT
318 CCACCGTTTTTGATAGAATCAAAGTTTATCTCTTAAATTAGACAAACATGAAGAGTCATACTAAT
* ** * * *
33070 CCCTATTCTTGTCATGATTAGGCACCATAACCATAGTCTTCTCT-TAAGGATACATGATATTGAT
383 CCCTATTCTTTTCACAATTAGGCACCATAAACATAGTCTTCT-TATAAGGATACACGATATTGAA
* * * * *
33134 GCTTTGGTTTCGCAAGAAAAGCTTTCTTCCCACCAATTTTTGTAAAGTTTGACTTCGTCCCTCTA
447 GCTTTGGTTTCACAAGAAAAGCTTTCTTCCCACCAATTTTTGTAAAGTCTGACTTCATGCCTCAA
* *
33199 ATGAGACAAACATT-GATTCTAGTAATGCTCTTCATTCATTTTATGATTAGGCACTATAAACACA
512 ATGAGACAAACATTGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACA
* * * * * * *
33263 TTCTCCATATTAGGGATAAAGGATAATGATGATTTTCTTTTACATGAAAATCTTTTGTTTGCCTT
577 TTCTCCACATTA-GGATAAAAGAT-ATAATGA-TTTCTTTTGCATGGAAATCTTTTCTTCGCCTT
* *
33328 ATTTACCTTAAAATCAAAGTTCATCCCTTAAAAAAGGCAAGCATCGATTCTCGTAATAGTCTCCA
639 ATTTACCTTAAAATCAAAGTTCATCCCTTAAATAAGGCAAGCATCGATTCTCGTAACAGTCTCCA
* * * * * * *
33393 TTTTTTTCAAGATTGGGAGCCAAAAACACATGCCCTTCATGAGGATACAAGACATTGATACTTTG
704 TTCTTTTCAAGATTGGGAACCAAAAACACATTCCCTTCATTAGGATACATGACATTGATGCTATG
* * *
33458 GTGATG-CAAAAAGAGCTTTTCTTACCACCGTTTTTGATCGAATCAAAGTTTGTCTCTTAAATAA
769 GTGACGCCAAAAA-AGCTTTTCTTACCACTGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAA
* * *
33522 GAGAAACTAGAATAGTCATACTAATCCTTGTTCTTTTCAGGATTAGACACCATAAACATAGTTTT
833 GAGAAACTAGAATAGTCATACTAATCCCTATTCTTTTCAGGATTAGGCACCATAAAC---G----
*
33587 CTCATAAGGATACATGATATTGATGCTTTGGTTTTGAAAGAAA
891 ----T-A-G-T-C-------T--T-C--------T------CA
* *
33630 GGCTTCTTCCCCCCAATTTTTGTAAAGTCTGACTTCGTGCCTCAAATGTA-ATAAACATTGATTC
1 ---TTC---CCCCAAATTTTTGTAAAGTCTGACTTCGTGCCTCAAATG-AGACAAACATTGATTC
* * * *
33694 TAGTAATGATCTTCATTTATTTTGGGATTA-GCCATGACAAACACATTCTCCACATTGGGATAAA
59 TAGTAATTATCTTCATTCATTTTGGGATTAGGCC-T-ATAAACACATTCTCCACATTAGGATAAA
* **
33758 TGTTATTGATGATTTTCTTTTGCATTGGAAATCTTTTTTTTGCCTTATTTTCCTTAAAATCAATT
122 TGTTATTGATGATTTT-TTTTGCA-TGGAAATCTTTTTTTTGCCTTATTTACCTTAAAATCAAAG
* * *
33823 TCTTCCCTTAAATAAGGCAATCATCGATTCTCATAATAGTTTCCATTCTTTTCAAGATTGGGAAC
185 TCATCCCTTAAATAAGGCAAGCATCGATTCTCATAATAGTCTCCATTCTTTTCAAGATTGGGAAC
* *
33888 TAAAAACACATTCCCTCCATTAGGATACATGACATTGATGCTATGGTGACG-CAAAAAATGCTTT
250 -AAAAACACATTCCCTTCATTAGGATACATAACATTGATGCTATGGTGACGCCAAAAAA-GCTTT
* * * *
33952 TCTTACCACCGTTTTTGTTAGAATCAAAGTTTATTTCTTAAATTAGACAAATATTAAGAGTCATA
313 TCTTACCACCGTTTTTGATAGAATCAAAGTTTATCTCTTAAATTAGACAAACATGAAGAGTCATA
* * * *
34017 CTAATCCATATTCTTTTCACGATTGGGCACCAT-AACATAGTCTTCTTTTAAGGATACACGATAT
378 CTAATCCCTATTCTTTTCACAATTAGGCACCATAAACATAGTCTTCTTATAAGGATACACGATAT
* * *
34081 TGATGTTTTGGTTTCACAAGAAAAGCTTTCTTCCCACCAATTTTTGTAAAGTCTGACTTCATCCC
443 TGAAGCTTTGGTTTCACAAGAAAAGCTTTCTTCCCACCAATTTTTGTAAAGTCTGACTTCATGCC
* *
34146 TCAAATGAGACAAACATT-GATTCTAGTAATGATCTTTATTCATTTTGTGATTAGGTACTATAAA
508 TCAAATGAGACAAACATTGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAA
*** *
34210 CACATTCTCCACATTAGGATAAAAG--ATAATGATTTGCTTTTGCACAAAAATCTTTTGTTTACT
573 CACATTCTCCACATTAGGATAAAAGATATAATGATTT-CTTTTGCATGGAAATCTTTT-CTT-C-
* * * *
34273 ACCTTATTTACCTTAAAATCAAAGTTCATCCCTTAAATAAGGCAAGCATTGATTCTCGTAGCAAT
634 GCCTTATTTACCTTAAAATCAAAGTTCATCCCTTAAATAAGGCAAGCATCGATTCTCGTAACAGT
* * * * * *
34338 CTACGTTCTTTTCAAGATTGAGAACCAAAAACACATTCCTTTCATTTGGATACAAGACATTGATG
699 CTCCATTCTTTTCAAGATTGGGAACCAAAAACACATTCCCTTCATTAGGATACATGACATTGATG
* * * * *
34403 C-ATTGTTGATGCAAAAAAAGCTTTTCTTGCCACTGTTTTTGATAGATTCAAAGTTTGTCTCTTA
764 CTA-TGGTGACGCCAAAAAAGCTTTTCTTACCACTGTTTTTGATAGAATCAAAGTTTGTCTCTTA
* *
34467 AATAAGAGAAATTAGAATAGTCATACTAATCCCTGTTCTTTTCAGGATTAGGCACCATAAACGTA
828 AATAAGAGAAACTAGAATAGTCATACTAATCCCTATTCTTTTCAGGATTAGGCACCATAAACGTA
34532 GTCTTCTCA
893 GTCTTCTCA
* *
34541 TTCCCCCTAATTTTTGTAAAGTCTGACTTTGTGCCTCAAATGAGACAAACATTGATTCTAGTAAT
1 TTCCCCCAAATTTTTGTAAAGTCTGACTTCGTGCCTCAAATGAGACAAACATTGATTCTAGTAAT
** *
34606 TATCTTCATTCATTTTCTGATTAGGCTCTATAAACACATTCTCCTCATTAGGATAAATGTTATTG
66 TATCTTCATTCATTTTGGGATTAGGC-CTATAAACACATTCTCCACATTAGGATAAATGTTATTG
* * * *
34671 ATGACTTTTTTTTGCGTGAAAATCTTTTCTTTGCCCTATTTACCTTAAAATCAAAGTCATCCCTT
130 ATGA-TTTTTTTTGCATGGAAATCTTTTTTTTGCCTTATTTACCTTAAAATCAAAGTCATCCCTT
* *
34736 AAATAAGGCAAGCATCGATTCTCGTAATAGTGTCCATTCTTTTCAAGATTGGGAATCAAAAACAC
194 AAATAAGGCAAGCATCGATTCTCATAATAGTCTCCATTCTTTTCAAGATTGGGAA-CAAAAACAC
* * * *
34801 GTTCCCTTCATTAGGATACATAACATTGATGCCATGGTGACGCCAAAAAAGATTTTCTTACCACT
258 ATTCCCTTCATTAGGATACATAACATTGATGCTATGGTGACGCCAAAAAAGCTTTTCTTACCACC
* * * *
34866 GTTTTTGATAGAATCAAAGTTTCTCTCCTAAATTAGACAAACATGAAGGGTCATACTATTCCCTA
323 GTTTTTGATAGAATCAAAGTTTATCTCTTAAATTAGACAAACATGAAGAGTCATACTAATCCCTA
* * * * *
34931 TTCTTTTCACAATTAGGCACCATAAACATAGTGTTCTCATAAGGATATAGGTTATTGAAGCTTTG
388 TTCTTTTCACAATTAGGCACCATAAACATAGTCTTCTTATAAGGATACACGATATTGAAGCTTTG
* * * * * * *
34996 GTTTCACAAGAAAGGCTTTTTTCCCACCAAATTTCGTAAAGTCTAACTTCGTGCCTCTAATGAGA
453 GTTTCACAAGAAAAGCTTTCTTCCCACCAATTTTTGTAAAGTCTGACTTCATGCCTCAAATGAGA
* *
35061 C-AACATTGGATTCTAGTAATGACCTTCATTCATTTTGGGATTAGGCACTATAAACACATTCTCC
518 CAAACATTGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCC
35125 ACATTAGGATAAAAGATAATAATGATTTCTTTTGCATGGAAATCTTTTCTTCGCCTTATTTACCT
583 ACATTAGGATAAAAGAT-ATAATGATTTCTTTTGCATGGAAATCTTTTCTTCGCCTTATTTACCT
* *
35190 TAAAATCAAAGTTCATCCCTTAAATAAGGCAAGCATCGATTCTCGTAATAGTGTCCATTCTTTTC
647 TAAAATCAAAGTTCATCCCTTAAATAAGGCAAGCATCGATTCTCGTAACAGTCTCCATTCTTTTC
**
35255 AAGATTGGGAATTAAAAACACATTCCCTTCATTAGGATACATGACATTGATGCTATGGTGACGCC
712 AAGATTGGGAACCAAAAACACATTCCCTTCATTAGGATACATGACATTGATGCTATGGTGACGCC
* * * * * *
35320 AAAAAAGATTTTCTTACCATTGTTTTTGATAGAATCAAAGTTTCTCTCCTAAATTAGACAAAC-A
777 AAAAAAGCTTTTCTTACCACTGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGAGAAACTA
** * * * *
35384 TGAAGGGTCATACTATTCCCTATTCTTTTCACGATTAGGCACCATAAACATAGTGTTCTCA
842 -GAATAGTCATACTAATCCCTATTCTTTTCAGGATTAGGCACCATAAACGTAGTCTTCTCA
* * * * *** * ** * *
35445 TAAGGATACACGATATTGATGCTTTGGTTTCACAAGAAAGGCTTTTTTCCCACCAAATTTCGTAA
1 T-----TCCCCCA-A---AT--TTT--TGT-A-AAGTCTGAC-TTCGTGCC-TCAAA--T-G---
* * * * * ** * ** *
35510 AGTCTAAC-TTCG-TGCCTCA--AATGAGACAACATTGGATTCTAGTAATGATTA--CCT-T-CA
43 AGACAAACATT-GAT-TCT-AGTAATTA-TCTTCATT-CATT-T--T-GGGATTAGGCCTATAAA
** **** ** **
35567 TTCATT-TTGGGATTAGGCACTATAAACACAT-TCTCCACATTAGGATAAAAGA-TAATGATG-A
99 CACATTCTCCACATTAGG----AT--A-A-ATGT-T----ATT--GAT----GATTTTTTTTGCA
*** * *
35628 TTTCTTTTGCATGGAAATCTTTTTTTTTTTTGCCTTATCTACCTTAAAATCGAAGTCCATCCCTT
145 --T-GGA--------AATC----TTTTTTTTGCCTTATTTACCTTAAAATCAAAGT-CATCCCTT
* * *
35693 AAATAAGGCAAGCATCGATTCTCATAACAGTCTCCATTCTTTTCAAGATTGGCAACCAATAACAC
194 AAATAAGGCAAGCATCGATTCTCATAATAGTCTCCATTCTTTTCAAGATTGGGAA-CAAAAACAC
* * * * * * * *
35758 ATTCCCTTCATGAGCATACA-AGACACTGATACTTTGATGACGCAAAAAAAGCTTGTCTTACCAC
258 ATTCCCTTCATTAGGATACATA-ACATTGATGCTATGGTGACGCCAAAAAAGCTTTTCTTACCAC
* * * ** *
35822 CGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGAGAAAC-TAGAATTGTCAAACTAATCCC
322 CGTTTTTGATAGAATCAAAGTTTATCTCTTAAATTAGACAAACAT-GAAGAGTCATACTAATCCC
* * *
35886 TATTCTTTTCA-ACATTAGGCCCCATAAACGTAGTCTTCTTGTAAGGATACACGATATTGATA-C
386 TATTCTTTTCACA-ATTAGGCACCATAAACATAGTCTTCTTATAAGGATACACGATATTGA-AGC
* *
35949 TTTGGTTTTGA-AAGAAAAGCTTTCTTCCCCCCAATTTTTGTAAAGTCTGACTTCATGCCTCAAA
449 TTTGG-TTTCACAAGAAAAGCTTTCTTCCCACCAATTTTTGTAAAGTCTGACTTCATGCCTCAAA
36013 TGAGACAAACA-TGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACAT
513 TGAGACAAACATTGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACAT
* * * * *
36077 TCTACACATTAGGATAAAAGATTATGATGATTTTCTTTTGCATGGAAATATTTTCTTTGCCATAT
578 TCTCCACATTAGGATAAAAGA-TATAATGA-TTTCTTTTGCATGGAAATCTTTTCTTCGCCTTAT
*
36142 TTACCTTAAAATCGAAGTTCATCCCTTAAATAAGGCAAGCATCGATTCTCGTAACAGTCTCCATT
641 TTACCTTAAAATCAAAGTTCATCCCTTAAATAAGGCAAGCATCGATTCTCGTAACAGTCTCCATT
*
36207 CTTTTCAAGATTGGGAACCAAAAACACATTCCCTTCATTAGGATACATGACGTTGATGCCT-TGG
706 CTTTTCAAGATTGGGAACCAAAAACACATTCCCTTCATTAGGATACATGACATTGATG-CTATGG
* * *
36271 TGACG-CAGAAAAAGCTTTTCTTACCGCCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATCAT
770 TGACGCCA-AAAAAGCTTTTCTTACCACTGTTTTTGATAGAATCAAAGTTTGTCTCTTAAAT-AA
* *
36335 G-GAAACTAGAATAGTCATACTAATCCCTATTCTTTTCAGGGTTAGGCACTATAAACGTAGTCTT
833 GAGAAACTAGAATAGTCATACTAATCCCTATTCTTTTCAGGATTAGGCACCATAAACGTAGTCTT
36399 CTCA
898 CTCA
36403 T
1 T
36404 AAGGATACAC
Statistics
Matches: 2364, Mismatches: 295, Indels: 214
0.82 0.10 0.07
Matches are distributed among these distances:
903 1 0.00
904 469 0.20
905 287 0.12
906 9 0.00
907 18 0.01
908 13 0.01
909 3 0.00
910 1 0.00
911 1 0.00
913 2 0.00
915 3 0.00
917 3 0.00
918 1 0.00
919 5 0.00
920 6 0.00
921 4 0.00
923 1 0.00
924 1 0.00
925 1 0.00
926 15 0.01
927 19 0.01
928 6 0.00
929 3 0.00
930 3 0.00
931 1 0.00
932 7 0.00
933 2 0.00
934 3 0.00
935 1 0.00
936 1 0.00
937 1 0.00
938 4 0.00
939 1 0.00
940 3 0.00
942 4 0.00
943 1 0.00
944 2 0.00
946 3 0.00
947 24 0.01
948 5 0.00
949 1 0.00
950 235 0.10
951 276 0.12
952 196 0.08
953 55 0.02
956 32 0.01
957 357 0.15
958 270 0.11
959 4 0.00
ACGTcount: A:0.31, C:0.19, G:0.14, T:0.35
Consensus pattern (901 bp):
TTCCCCCAAATTTTTGTAAAGTCTGACTTCGTGCCTCAAATGAGACAAACATTGATTCTAGTAAT
TATCTTCATTCATTTTGGGATTAGGCCTATAAACACATTCTCCACATTAGGATAAATGTTATTGA
TGATTTTTTTTGCATGGAAATCTTTTTTTTGCCTTATTTACCTTAAAATCAAAGTCATCCCTTAA
ATAAGGCAAGCATCGATTCTCATAATAGTCTCCATTCTTTTCAAGATTGGGAACAAAAACACATT
CCCTTCATTAGGATACATAACATTGATGCTATGGTGACGCCAAAAAAGCTTTTCTTACCACCGTT
TTTGATAGAATCAAAGTTTATCTCTTAAATTAGACAAACATGAAGAGTCATACTAATCCCTATTC
TTTTCACAATTAGGCACCATAAACATAGTCTTCTTATAAGGATACACGATATTGAAGCTTTGGTT
TCACAAGAAAAGCTTTCTTCCCACCAATTTTTGTAAAGTCTGACTTCATGCCTCAAATGAGACAA
ACATTGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCACA
TTAGGATAAAAGATATAATGATTTCTTTTGCATGGAAATCTTTTCTTCGCCTTATTTACCTTAAA
ATCAAAGTTCATCCCTTAAATAAGGCAAGCATCGATTCTCGTAACAGTCTCCATTCTTTTCAAGA
TTGGGAACCAAAAACACATTCCCTTCATTAGGATACATGACATTGATGCTATGGTGACGCCAAAA
AAGCTTTTCTTACCACTGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGAGAAACTAGAAT
AGTCATACTAATCCCTATTCTTTTCAGGATTAGGCACCATAAACGTAGTCTTCTCA
Found at i:35446 original size:475 final size:477
Alignment explanation
Indices: 34556--36418 Score: 2613
Period size: 475 Copynumber: 3.9 Consensus size: 477
34546 CCTAATTTTT
* * * *
34556 GTAAAGTCTGACTTTGTGCCTCAAATGAGACAAACATT-GATTCTAGTAATTATCTTCATTCATT
1 GTAAAGTCTAACTTCGTGCCTCAAATGAGACAAACATTGGATTCTAGTAATGACCTTCATTCATT
** * * * * * *
34620 TTCTGATTAGGCTCTATAAACACATTCTCCTCATTAGGATAAATGTTATTGATGACTTTTTTTTG
66 TTGGGATTAGGCACTATAAACACATTCTCCACATTAGGATAAAAGATAATGATGACTTTCTTTTG
* * *
34685 CGTGAAAATCTTTTCTTTGCCCTATTTACCTTAAAATCAAAG-TCATCCCTTAAATAAGGCAAGC
131 CATGGAAATCTTTTCTTTGCCTTATTTACCTTAAAATCAAAGTTCATCCCTTAAATAAGGCAAGC
* * * *
34749 ATCGATTCTCGTAATAGTGTCCATTCTTTTCAAGATTGGGAATCAAAAACACGTTCCCTTCATTA
196 ATCGATTCTCGTAACAGTCTCCATTCTTTTCAAGATTGGGAACCAAAAACACATTCCCTTCATTA
* * *
34814 GGATACATAACATTGATGCCATGGTGACGCCAAAAAAGATTTTCTTACCACTGTTTTTGATAGAA
261 GGATACATGACATTGATGCTATGGTGACGCCAAAAAAGATTTTCTTACCACCGTTTTTGATAGAA
* *
34879 TCAAAGTTTCTCTCCTAAATTAGACAAAC-ATGAAGGGTCATACTATTCCCTATTCTTTTCACAA
326 TCAAAGTTTCTCTCCTAAATTAGACAAACTA-GAAGGGTCATACTAATCCCTATTCTTTTCACGA
* * * *
34943 TTAGGCACCATAAACATAGTGTTCTCATAAGGATATAGGTTATTGAAGCTTTGGTTTCACAAGAA
390 TTAGGCACCATAAACATAGTCTTCTCATAAGGATACACGATATTGAAGCTTTGGTTTCACAAGAA
35008 AGGCTTTTTTCCCACCAAATTTC
455 AGGCTTTTTTCCCACCAAATTTC
*
35031 GTAAAGTCTAACTTCGTGCCTCTAATGAGAC-AACATTGGATTCTAGTAATGACCTTCATTCATT
1 GTAAAGTCTAACTTCGTGCCTCAAATGAGACAAACATTGGATTCTAGTAATGACCTTCATTCATT
*
35095 TTGGGATTAGGCACTATAAACACATTCTCCACATTAGGATAAAAGATAATAATGA-TTTCTTTTG
66 TTGGGATTAGGCACTATAAACACATTCTCCACATTAGGATAAAAGATAATGATGACTTTCTTTTG
*
35159 CATGGAAATCTTTTCTTCGCCTTATTTACCTTAAAATCAAAGTTCATCCCTTAAATAAGGCAAGC
131 CATGGAAATCTTTTCTTTGCCTTATTTACCTTAAAATCAAAGTTCATCCCTTAAATAAGGCAAGC
* * **
35224 ATCGATTCTCGTAATAGTGTCCATTCTTTTCAAGATTGGGAATTAAAAACACATTCCCTTCATTA
196 ATCGATTCTCGTAACAGTCTCCATTCTTTTCAAGATTGGGAACCAAAAACACATTCCCTTCATTA
**
35289 GGATACATGACATTGATGCTATGGTGACGCCAAAAAAGATTTTCTTACCATTGTTTTTGATAGAA
261 GGATACATGACATTGATGCTATGGTGACGCCAAAAAAGATTTTCTTACCACCGTTTTTGATAGAA
*
35354 TCAAAGTTTCTCTCCTAAATTAGACAAAC-ATGAAGGGTCATACTATTCCCTATTCTTTTCACGA
326 TCAAAGTTTCTCTCCTAAATTAGACAAACTA-GAAGGGTCATACTAATCCCTATTCTTTTCACGA
* *
35418 TTAGGCACCATAAACATAGTGTTCTCATAAGGATACACGATATTGATGCTTTGGTTTCACAAGAA
390 TTAGGCACCATAAACATAGTCTTCTCATAAGGATACACGATATTGAAGCTTTGGTTTCACAAGAA
35483 AGGCTTTTTTCCCACCAAATTTC
455 AGGCTTTTTTCCCACCAAATTTC
35506 GTAAAGTCTAACTTCGTGCCTCAAATGAGAC-AACATTGGATTCTAGTAATGATTACCTTCATTC
1 GTAAAGTCTAACTTCGTGCCTCAAATGAGACAAACATTGGATTCTAGTAATG---ACCTTCATTC
35570 ATTTTGGGATTAGGCACTATAAACACATTCTCCACATTAGGATAAAAGATAATGATGA-TTTCTT
63 ATTTTGGGATTAGGCACTATAAACACATTCTCCACATTAGGATAAAAGATAATGATGACTTTCTT
* * * *
35634 TTGCATGGAAATCTTTTTTTTTTTTGCCTTATCTACCTTAAAATCGAAGTCCATCCCTTAAATAA
128 TTGCATGGAAATC----TTTTCTTTGCCTTATTTACCTTAAAATCAAAGTTCATCCCTTAAATAA
* * *
35699 GGCAAGCATCGATTCTCATAACAGTCTCCATTCTTTTCAAGATTGGCAACCAATAACACATTCCC
189 GGCAAGCATCGATTCTCGTAACAGTCTCCATTCTTTTCAAGATTGGGAACCAAAAACACATTCCC
* * * * * * * * * *
35764 TTCATGAGCATACAAGACACTGATACTTTGATGACGCAAAAAAAGCTTGTCTTACCACCGTTTTT
254 TTCATTAGGATACATGACATTGATGCTATGGTGACGCCAAAAAAGATTTTCTTACCACCGTTTTT
* * * * ** *
35829 GATAGAATCAAAGTTTGTCTCTTAAATAAGAGAAACTAGAATTGTCAAACTAATCCCTATTCTTT
319 GATAGAATCAAAGTTTCTCTCCTAAATTAGACAAACTAGAAGGGTCATACTAATCCCTATTCTTT
* * **
35894 TCAAC-ATTAGGCCCCATAAACGTAGTCTTCTTGTAAGGATACACGATATTGATA-CTTTGGTTT
384 TC-ACGATTAGGCACCATAAACATAGTCTTCTCATAAGGATACACGATATTGA-AGCTTTGG-TT
* * * * * *
35957 TGA-AAGAAAAGCTTTCTTCCCCCCAATTTTT
446 TCACAAGAAAGGCTTTTTTCCCACCAAATTTC
* * *
35988 GTAAAGTCTGACTTCATGCCTCAAATGAGACAAACA-TGGATTCTAGTAATGATCTTCATTCATT
1 GTAAAGTCTAACTTCGTGCCTCAAATGAGACAAACATTGGATTCTAGTAATGACCTTCATTCATT
* * * *
36052 TTGTGATTAGGCACTATAAACACATTCTACACATTAGGATAAAAGATTATGATGATTTTCTTTTG
66 TTGGGATTAGGCACTATAAACACATTCTCCACATTAGGATAAAAGATAATGATGACTTTCTTTTG
* * *
36117 CATGGAAATATTTTCTTTGCCATATTTACCTTAAAATCGAAGTTCATCCCTTAAATAAGGCAAGC
131 CATGGAAATCTTTTCTTTGCCTTATTTACCTTAAAATCAAAGTTCATCCCTTAAATAAGGCAAGC
36182 ATCGATTCTCGTAACAGTCTCCATTCTTTTCAAGATTGGGAACCAAAAACACATTCCCTTCATTA
196 ATCGATTCTCGTAACAGTCTCCATTCTTTTCAAGATTGGGAACCAAAAACACATTCCCTTCATTA
* * *
36247 GGATACATGACGTTGATGCCT-TGGTGACG-CAGAAAAAGCTTTTCTTACCGCCGTTTTTGATAG
261 GGATACATGACATTGATG-CTATGGTGACGCCA-AAAAAGATTTTCTTACCACCGTTTTTGATAG
* * * * ** *
36310 AATCAAAGTTTGTCTCTTAAATCATG-GAAACTAGAATAGTCATACTAATCCCTATTCTTTTCAG
324 AATCAAAGTTTCTCTCCTAAATTA-GACAAACTAGAAGGGTCATACTAATCCCTATTCTTTTCAC
* * *
36374 GGTTAGGCACTATAAACGTAGTCTTCTCATAAGGATACACGATAT
388 GATTAGGCACCATAAACATAGTCTTCTCATAAGGATACACGATAT
36419 CAATGCTTTA
Statistics
Matches: 1262, Mismatches: 107, Indels: 37
0.90 0.08 0.03
Matches are distributed among these distances:
474 52 0.04
475 445 0.35
476 257 0.20
477 3 0.00
478 86 0.07
479 64 0.05
480 18 0.01
482 326 0.26
483 11 0.01
ACGTcount: A:0.32, C:0.20, G:0.14, T:0.34
Consensus pattern (477 bp):
GTAAAGTCTAACTTCGTGCCTCAAATGAGACAAACATTGGATTCTAGTAATGACCTTCATTCATT
TTGGGATTAGGCACTATAAACACATTCTCCACATTAGGATAAAAGATAATGATGACTTTCTTTTG
CATGGAAATCTTTTCTTTGCCTTATTTACCTTAAAATCAAAGTTCATCCCTTAAATAAGGCAAGC
ATCGATTCTCGTAACAGTCTCCATTCTTTTCAAGATTGGGAACCAAAAACACATTCCCTTCATTA
GGATACATGACATTGATGCTATGGTGACGCCAAAAAAGATTTTCTTACCACCGTTTTTGATAGAA
TCAAAGTTTCTCTCCTAAATTAGACAAACTAGAAGGGTCATACTAATCCCTATTCTTTTCACGAT
TAGGCACCATAAACATAGTCTTCTCATAAGGATACACGATATTGAAGCTTTGGTTTCACAAGAAA
GGCTTTTTTCCCACCAAATTTC
Found at i:39380 original size:476 final size:476
Alignment explanation
Indices: 37151--40524 Score: 4462
Period size: 477 Copynumber: 7.1 Consensus size: 476
37141 GTCCTCATCA
* * *
37151 TTCTTCCCCCCAATTTTTGTAAGGTCTGACTTCATGCCTCAAATGAGACAAACATTGATTCTAGT
1 TTCTTCCCCCCAATTTTTGTAAAGTCTTACTTCGTGCCTCAAATGAGACAAACATTGATTCTAGT
* * *
37216 AATTATCTTCATTCATTTTGTGATTAGGCTCTATAAACACATTCTACTCATTAGGATAAATGTTA
66 AATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGTTA
* * *
37281 TTGATGATTTTCTTTTACATGAAAATCTTTTCTTTGCCCTATTTACCTTAAAATCAAAGTTGATC
131 TTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTACCTTAAAATCAAAGTTCATC
* *
37346 CCTTAAATAAGGCAAGCATCGATTCTCGTAACAGTGTCCATTCTTTTTAAGATTGGGAACCAAAA
196 CCTTAAATAAGGCAAGCATCGATTCTCGTAACAGTCTCCATTCTTTTCAAGATTGGGAACCAAAA
* * * * * *
37411 ACACATTCCCTTCATTAGGATACATGACATTGATGCTATGGTGATGCAAAAAAAGATTTTCTTAC
261 ACACATTCCCTTCATGAGGATACAAGACATTGATACTTTGGTGATGCAAAAAGAGCTTTTCTTAC
* * * * * *
37476 CATCATTTTTGATAGAATCAACGTTTG-CCTCCTAAATAAGACAAAC-ATGAAGAGTCAAACTAA
326 CATCGTTTTTGATAGAATCAAAGTTTGTCC-CTTAAATAAGAGAAACTA-GAATAGTCATACTAA
* * * ** *
37539 TCCCTATTCTTTTCAAGATTAGGCATCATAAACATAGTCTTCTGTTAAGGATATACGATATTGAT
389 TCCCTATTCTTTTCAGGATTAGGCACCATAAACGTAGTCTTCTCATAAGGATACACGATATTGAT
* *
37604 GCTTTGG-TTTCACAAGAAAAGCT
454 GCTTTGGTTTTGA-AAGAAAGGCT
* * *
37627 TTCTTCCCACCAATTTTTGTAAAGTCTGAATTCGT-CTCTCAAATGAGACAAACATTGATTCTAG
1 TTCTTCCCCCCAATTTTTGTAAAGTCTTACTTCGTGC-CTCAAATGAGACAAACATTGATTCTAG
* *
37691 TAATGATCTTCATTCATTTTATGATTAGGCACTATAAACACATTCTCCAT-ATTAGGGATAAAGG
65 TAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCC-TCATTA-GGATAAATG
* * * * * * * *
37755 ATAATGACGATTTGCTTTTACATGAAAATCTTTTGTTTGCCTTATTTACCTTAAAATCAAAGTTC
128 TTATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTACCTTAAAATCAAAGTTC
* * * *
37820 ATCCCTCAAAAAAGGCAAGCATCGATTCTCGTAATAGTCTCCATTGTTTTCAAGATT-GGAAGCC
193 ATCCCTTAAATAAGGCAAGCATCGATTCTCGTAACAGTCTCCATTCTTTTCAAGATTGGGAA-CC
*
37884 AAAAACACATTCCCTTCATGAGGATACAAGACATTGATACTTTGGTGATGCAAAAAGAGCTTTCC
257 AAAAACACATTCCCTTCATGAGGATACAAGACATTGATACTTTGGTGATGCAAAAAGAGCTTTTC
* * *
37949 TTACCACCGTTTTTGATCGAATCAAAGTTTGTCTCTTAAATAAGAGAAACTAGAATAGTCATACT
322 TTACCATCGTTTTTGATAGAATCAAAGTTTGTCCCTTAAATAAGAGAAACTAGAATAGTCATACT
* *
38014 AATCCTTGTTCTTTTCAGGATTAGGCACCATAAACGTAGTCTTCTC------AT-CA--ATATTG
387 AATCCCTATTCTTTTCAGGATTAGGCACCATAAACGTAGTCTTCTCATAAGGATACACGATATTG
38070 ATGCTTTGGTTTTGAAA-AAGAGGCT
452 ATGCTTTGGTTTTGAAAGAA-AGGCT
*
38095 TTCTTCCCCCCAATTTTTGTAAAGTCTGACTTCGTGCCTCAAATGAGACAAACATTGATTCTAGT
1 TTCTTCCCCCCAATTTTTGTAAAGTCTTACTTCGTGCCTCAAATGAGACAAACATTGATTCTAGT
* * *
38160 AATGATCTTTATTCATTTTGTGATTAGGGACTATAAACACATTCTCCTCATTAGGATAAAAGTTA
66 AATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGTTA
* * * * *
38225 TTGATGATTCTCTTTTGCATGGAAATCTTTTCTTCGCCTTATTTACCTTAAAGTCAAAGTTCATT
131 TTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTACCTTAAAATCAAAGTTCATC
* * * * * *
38290 CCTTAAATAAGGCAAGCAACGATTCTTGTAACAGTGTCCATTCTTTTCAAAATTGGGAACCAGAG
196 CCTTAAATAAGGCAAGCATCGATTCTCGTAACAGTCTCCATTCTTTTCAAGATTGGGAACCAAAA
* * * * * * * *
38355 ACACATTCCCTTTATTAGGATACATGACGTTGATGCTATGGTGACGCAAAAAAAGCTTTTCTTAC
261 ACACATTCCCTTCATGAGGATACAAGACATTGATACTTTGGTGATGCAAAAAGAGCTTTTCTTAC
* * * * *
38420 CA-CCTTTTTTATAGAATCAAAGTTTGTCTCTTAAATAAGAGAAAC-ATGAAGAGTCACACTAAT
326 CATCGTTTTTGATAGAATCAAAGTTTGTCCCTTAAATAAGAGAAACTA-GAATAGTCATACTAAT
* * * * * * * *
38483 CCTTATGCTTTTCACGATTAGGCACTATAAACATAGTCTTCTCTTAAGGATAAACGATATTAATG
390 CCCTATTCTTTTCAGGATTAGGCACCATAAACGTAGTCTTCTCATAAGGATACACGATATTGATG
* *
38548 CTTTGGTTTTGAAACAGCA-GCT
455 CTTTGGTTTTGAAAGA-AAGGCT
38570 TTCTTCCCCCCAATTTTTGTAAAGTCTTACTTCGTGCCTCAAATGAGACAAACATTGATTCTAGT
1 TTCTTCCCCCCAATTTTTGTAAAGTCTTACTTCGTGCCTCAAATGAGACAAACATTGATTCTAGT
* *
38635 AATGATCTTTATTCATTTTGTGATGAGG---------CACATTCTCCTCATTAGGATAAATGTTA
66 AATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGTTA
* * *
38691 TTGATGATTTTCTTTTGCGTTGGAAATCTTTTCTTTGCACTATTTAACTTAAAATCAAAGTTCAT
131 TTGATGATTTTCTTTTGC-ATGGAAATCTTTTCTTTGCCCTATTTACCTTAAAATCAAAGTTCAT
* * * *
38756 CCCTTTAAGAAGGCAAGCATTGATTCTCGTAACAGTCTCCATTCTTTTCAAGATTGAGAACCAAA
195 CCCTTAAATAAGGCAAGCATCGATTCTCGTAACAGTCTCCATTCTTTTCAAGATTGGGAACCAAA
38821 AACACATTCCCTTCATGAGGATACAAGACATTGATACTTTGGTGATGCAAAAAGAGCTTTTCTTA
260 AACACATTCCCTTCATGAGGATACAAGACATTGATACTTTGGTGATGCAAAAAGAGCTTTTCTTA
* * * *
38886 CCATCGTTTTTTATAGAATCAAGGTTTTTCCCTTAAACAAGAGAAACTAGAATAGTCATACTAAT
325 CCATCGTTTTTGATAGAATCAAAGTTTGTCCCTTAAATAAGAGAAACTAGAATAGTCATACTAAT
* * * *
38951 CCCTATTCTTTTTAGGATTAGGCACCATAAAGGTAGTCTTGTCATAAAGATACACGATATTGATG
390 CCCTATTCTTTTCAGGATTAGGCACCATAAACGTAGTCTTCTCATAAGGATACACGATATTGATG
*
39016 ATTTGGTTTTGAAAGAAAGGCT
455 CTTTGGTTTTGAAAGAAAGGCT
* * * * *
39038 TTCGTCCCTCCAATTTTTGTAAAGTCTTACTTCGTGCTTTAAAAGAGACAAACATTGATTCTAGT
1 TTCTTCCCCCCAATTTTTGTAAAGTCTTACTTCGTGCCTCAAATGAGACAAACATTGATTCTAGT
* ** * * *
39103 AATGATCTTCATTCATTTTGTGATTAGTCACTGCAAACTCATTCTCCTTATTAGGATAATTGTTA
66 AATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGTTA
* *
39168 TTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCAATTTACCTTAAAATCAAAGTTTATC
131 TTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTACCTTAAAATCAAAGTTCATC
** * * *
39233 CCTTAAATAAGGTGAGCATCGATTCTCGTAACAGTCTCCATTGTTTTCCAA-AATGGGAACTAAA
196 CCTTAAATAAGGCAAGCATCGATTCTCGTAACAGTCTCCATTCTTTT-CAAGATTGGGAACCAAA
* *
39297 AACACATTCCCTTCATGAAGATGCAAGACATTGATACTTTGGTGATGCAAAAAGAGCTTTTCTTA
260 AACACATTCCCTTCATGAGGATACAAGACATTGATACTTTGGTGATGCAAAAAGAGCTTTTCTTA
* * * *
39362 CCATCGTCTTTGATAGAATCAAAGTTTATCCCTTAAAAAAGAGAAACTAGAATAGTCATACGAAT
325 CCATCGTTTTTGATAGAATCAAAGTTTGTCCCTTAAATAAGAGAAACTAGAATAGTCATACTAAT
* * * *
39427 CCCTGTTCTTTTCAGGATTAGGTACCACAAAGGTAGTCTTCTCATAAGGATACACGATATTGATG
390 CCCTATTCTTTTCAGGATTAGGCACCATAAACGTAGTCTTCTCATAAGGATACACGATATTGATG
39492 CTTTGGTTTTGAAAGAAAGGCT
455 CTTTGGTTTTGAAAGAAAGGCT
* * * * *
39514 TCCGTCCCCCTAATTTTTGTAAAATCTTACTTCGTGCCTCAAACGAGACAAACATTGATTCTAGT
1 TTCTTCCCCCCAATTTTTGTAAAGTCTTACTTCGTGCCTCAAATGAGACAAACATTGATTCTAGT
* * * *
39579 AATGATCTTCATTCATTTTGGGATTGGGAACTACAAACACATTCTCCTCATTAGGATAAATGTTA
66 AATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGTTA
*
39644 TTGATGATTTTCTTTTGCATTGGAAATCTTTTCTTTGCACTATTTACCTTAAAATCAAAGTTCAT
131 TTGATGATTTTCTTTTGCA-TGGAAATCTTTTCTTTGCCCTATTTACCTTAAAATCAAAGTTCAT
* *
39709 CCCTTAAAGAAGGCAAGCATCGATTCTCGTAACAGTCTCCATTCTTTTCAAGATTGAGAACCAAA
195 CCCTTAAATAAGGCAAGCATCGATTCTCGTAACAGTCTCCATTCTTTTCAAGATTGGGAACCAAA
* *
39774 AACAAATTCCCTTCATGAGGATACAAGACATTGATACTTTGGTGACGCAAAAAGAGCTTTTCTTA
260 AACACATTCCCTTCATGAGGATACAAGACATTGATACTTTGGTGATGCAAAAAGAGCTTTTCTTA
* * * *
39839 CCATCGTTTTTGATAGAATCAAGGTTTGTTCCTTAAACAAGAGAAACTAGAATAGTCATATTAAT
325 CCATCGTTTTTGATAGAATCAAAGTTTGTCCCTTAAATAAGAGAAACTAGAATAGTCATACTAAT
* * ** *
39904 CCCTATTCTTTTTAGGATTACGTGCCATAAAGGTAGTCTTCTCATAAGGATACACGATATTGATG
390 CCCTATTCTTTTCAGGATTAGGCACCATAAACGTAGTCTTCTCATAAGGATACACGATATTGATG
* *
39969 ATTTGGTTCTGAAAGAAAGGCT
455 CTTTGGTTTTGAAAGAAAGGCT
* * * * * *
39991 TCCGTCCCTCCAATTTTTGTAAAGTCTTACTTCGTGACTTAAAAGAGACAAACATTGATTCTAGT
1 TTCTTCCCCCCAATTTTTGTAAAGTCTTACTTCGTGCCTCAAATGAGACAAACATTGATTCTAGT
* * * * * *
40056 AATGATCTTCATTAATTTTGTGATTAGGCACTGTAAACTCATCCTCCTCTTTAGGATAATTGTTA
66 AATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGTTA
** * * *
40121 TTGACAATTTTCTTTTGCATGGAAATCTTTTCTTTGCCTTATTTTCCTTAAAATCGAAGTTCATC
131 TTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTACCTTAAAATCAAAGTTCATC
* * *
40186 CTTTAAATAAGGCAAGCATCGATTCTCATAGCAGTCTCCATTCTTTTCAAGATTGGGAACCAAAA
196 CCTTAAATAAGGCAAGCATCGATTCTCGTAACAGTCTCCATTCTTTTCAAGATTGGGAACCAAAA
* * * * * * *
40251 ACACATT-CCTTTA-GTAGGATACATGACATTGATGCTATGGTGATAG-AAAAAAAGATTTCCTT
261 ACACATTCCCTTCATG-AGGATACAAGACATTGATACTTTGGTGAT-GCAAAAAGAGCTTTTCTT
* * * * *
40313 GCCACCGTTTTTGATAGAATCAAAGTTTGTCTCC-TAAATAAAACAAAC-ATGAAGAGTCATACT
324 ACCATCGTTTTTGATAGAATCAAAGTTTGTC-CCTTAAATAAGAGAAACTA-GAATAGTCATACT
* * * * * *
40376 AATCCATATTCTTTTCACGAGTAGGCACCATAAACATAGTCTTCTCCTAAGGATACATGATATTG
387 AATCCCTATTCTTTTCAGGATTAGGCACCATAAACGTAGTCTTCTCATAAGGATACACGATATTG
* * *
40441 ATGCTTTGGTTTCGCAAGAAAAGCT
452 ATGCTTTGGTTTTGAAAGAAAGGCT
* * *
40466 TTCTTCCCACCAATTTTTGTAAAGT-TTGACTTCGT-CTCTCAAATGAGATAAACGTTGAT
1 TTCTTCCCCCCAATTTTTGTAAAGTCTT-ACTTCGTGC-CTCAAATGAGACAAACATTGAT
40525 ACATTCTTAA
Statistics
Matches: 2554, Mismatches: 299, Indels: 91
0.87 0.10 0.03
Matches are distributed among these distances:
465 1 0.00
466 136 0.05
467 331 0.13
468 341 0.13
469 6 0.00
470 1 0.00
471 2 0.00
472 2 0.00
473 1 0.00
474 4 0.00
475 330 0.13
476 655 0.26
477 742 0.29
478 2 0.00
ACGTcount: A:0.31, C:0.19, G:0.15, T:0.35
Consensus pattern (476 bp):
TTCTTCCCCCCAATTTTTGTAAAGTCTTACTTCGTGCCTCAAATGAGACAAACATTGATTCTAGT
AATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGTTA
TTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTACCTTAAAATCAAAGTTCATC
CCTTAAATAAGGCAAGCATCGATTCTCGTAACAGTCTCCATTCTTTTCAAGATTGGGAACCAAAA
ACACATTCCCTTCATGAGGATACAAGACATTGATACTTTGGTGATGCAAAAAGAGCTTTTCTTAC
CATCGTTTTTGATAGAATCAAAGTTTGTCCCTTAAATAAGAGAAACTAGAATAGTCATACTAATC
CCTATTCTTTTCAGGATTAGGCACCATAAACGTAGTCTTCTCATAAGGATACACGATATTGATGC
TTTGGTTTTGAAAGAAAGGCT
Found at i:40722 original size:240 final size:240
Alignment explanation
Indices: 40298--40730 Score: 618
Period size: 240 Copynumber: 1.8 Consensus size: 240
40288 TGGTGATAGA
40298 AAAAAAGATTTCCTTGCCACCGTTTTTGATAGAATCAAAGTTTGTCTCCTAAATAAAACAAACAT
1 AAAAAAGATTTCCTTGCCACCGTTTTTGATAGAATCAAAGTTTGTCTCCTAAATAAAACAAACAT
* * *
40363 GAAGAGTCATACTAATCCATATTCTTTTCACGAGTAGGCACCATAAACATAGTCTTCTCCTAAGG
66 GAAGAGTCATACTAATCCATATTCTTTTCACGAATAGGCAACATAAACATAGTCTTCTCATAAGG
* * * * *
40428 ATACATGATATTGATGCTTTGGTTTCGCAAGAAAAGCTTTCTTCCCACCAATTTTTGTAAAGTTT
131 ATACACGATATTGATGCTTTCGTTTCGAAAGAAAAGATTTCTTCCCACCAATTTTTCTAAAGTTT
40493 GACTTCGTCTCTCAAATGAGATAAACGTTGATACATTCTTAACAC
196 GACTTCGTCTCTCAAATGAGATAAACGTTGATACATTCTTAACAC
* * * * * * * *
40538 AAAAAAGCTTTTCTTGCCGCCGTTTTTGATAGAGTTAAAGTTTGTCTCTTAAATAAGAGAAAC-T
1 AAAAAAGATTTCCTTGCCACCGTTTTTGATAGAATCAAAGTTTGTCTCCTAAATAAAACAAACAT
* * * * **
40602 AGAATAGTCATACTAATCCTTATTGTTTTCAGGAATAGGCAACATAAATGTAGTCTTCTCATAAG
66 -GAAGAGTCATACTAATCCATATTCTTTTCACGAATAGGCAACATAAACATAGTCTTCTCATAAG
* *
40667 GATACACGATATTGATGCTTTCGTTTTGAAAGAAAGGATTTCTTTCCCA-CAATTTTTCTAAAGT
130 GATACACGATATTGATGCTTTCGTTTCGAAAGAAAAGATTTC-TTCCCACCAATTTTTCTAAAGT
40731 CAAACTTCGT
Statistics
Matches: 167, Mismatches: 24, Indels: 4
0.86 0.12 0.02
Matches are distributed among these distances:
239 1 0.01
240 160 0.96
241 6 0.04
ACGTcount: A:0.33, C:0.18, G:0.15, T:0.34
Consensus pattern (240 bp):
AAAAAAGATTTCCTTGCCACCGTTTTTGATAGAATCAAAGTTTGTCTCCTAAATAAAACAAACAT
GAAGAGTCATACTAATCCATATTCTTTTCACGAATAGGCAACATAAACATAGTCTTCTCATAAGG
ATACACGATATTGATGCTTTCGTTTCGAAAGAAAAGATTTCTTCCCACCAATTTTTCTAAAGTTT
GACTTCGTCTCTCAAATGAGATAAACGTTGATACATTCTTAACAC
Found at i:42444 original size:477 final size:476
Alignment explanation
Indices: 40538--45182 Score: 5918
Period size: 477 Copynumber: 9.8 Consensus size: 476
40528 TTCTTAACAC
* * * *
40538 AAAAAAGCTTTTCTTGCCGCCGTTTTTGATAGAGTTAAAGTTTGTCTCTTAAATAAGAGAAACTA
1 AAAAAAGCTTTTCTTACCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGAGAAACTA
* * * * **
40603 GAATAGTCATACTAATCCTTATTGTTTTCAGGAATAGGCAACATAAATGTAGTCTTCTCATAAGG
66 GAATAGTCATACTAATCCCTATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATAAGG
* * *
40668 ATACACGATATTGATGCTTTCGTTTTGAAAGAAAGGATTTCTTTCCCA-CAATTTTTCTAAAGTC
131 ATACACGATATTGATGCTTTGGTTTTGAAAGAAAGGCTTTC-TTCCCACCAATTTTTGTAAAGTC
* * *
40732 AAACTTCGTGCCTCAAAAGAGACAAACATTGATTCTAGTAATAATCTTCATTCATTTTGGGATTA
195 TAACTTCGTGCCTCAAATGAGACAAACATTGATTCTAGTAATGATCTTCATTCATTTTGGGATTA
* * * * *
40797 GGCAATATAAACACATTATCCACATTAGGATAAACGATAATGATGATTTTCTTTTGCTTGAAAAT
260 GGCACTATAAACACATTCTCCACATTAGGATAAAGGATAATGATGATTTTCTTTTGCATGGAAAT
* * * ** *
40862 CTTTTGTTTGCCTTATTTACCTTAAAATCAAAGTTCAACCCTTAAAAAAGGTGAGCATCAATTCT
325 CTTTTCTTTGCCTTATTTACCTTAAAATCAAAGTTCATCCCTTAAATAAGGCAAGCATCGATTCT
* * * *
40927 CGTAATAA-TCTCCATTCTTTTCAAGTTTGGGAACTAAAAACACATTCCCTTCATTTGGATACAA
390 CGTAA-AAGTCTCCATTCTTTTCAAGATTGGGAACCAAAAACACATTCCCTTCATTAGGATACAT
* * * * *
40991 GGCATTGATCCATTGTTGATGCA
454 GACATTGATGCTTTGGTGACGCA
* * *
41014 AAAAATGCTTTTCTTACCACCGTTTTTTATAGAATCAAAGTTTGTCTCTTAACTAAGAGAAACTA
1 AAAAAAGCTTTTCTTACCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGAGAAACTA
* *
41079 GAATAGTCATACTAATCCCTGTTCTTTTTAGGATTAGGCACCATAAACATAGTCTTCTCATAAGG
66 GAATAGTCATACTAATCCCTATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATAAGG
* * *
41144 ATACACGATATTGA---TTCGGTTTTGAAAGAAAGGCTTTCTTCCCCCCAATTTTTGTAAAGTTT
131 ATACACGATATTGATGCTTTGGTTTTGAAAGAAAGGCTTTCTTCCCACCAATTTTTGTAAAGTCT
* * * * * *
41206 GACTTCTTGCCTCAAATAAGACAGACATTGATTCTAGTAATAATCCTCATTCATTTTGGGATTAG
196 AACTTCGTGCCTCAAATGAGACAAACATTGATTCTAGTAATGATCTTCATTCATTTTGGGATTAG
* * * ** *
41271 GCAATATAAACACAATCTCCACATTAGGATAAAGGATAATGAAGATTTTCTTTTGCGCGAAAATC
261 GCACTATAAACACATTCTCCACATTAGGATAAAGGATAATGATGATTTTCTTTTGCATGGAAATC
* * * *
41336 TTTTGTTTGCCCTATTTACCTTAAAATCAAAGTTTATCTCTTAAATAAGGCAAGCATCGATTCTC
326 TTTTCTTTGCCTTATTTACCTTAAAATCAAAGTTCATCCCTTAAATAAGGCAAGCATCGATTCTC
* * *
41401 GTAACAGTGTCCATTCTTTTCAAGATTGGGAACCAAAAACACATTCCCTTCATTAAGATACATGA
391 GTAAAAGTCTCCATTCTTTTCAAGATTGGGAACCAAAAACACATTCCCTTCATTAGGATACATGA
* ***
41466 CATTGATGCTCTAACGACGCA
456 CATTGATGCTTTGGTGACGCA
* * * * * *
41487 AAAAAGGCTTTACTTACCCCCGTTTTTTATAAAATCAAAGTTTGTCT-TTAAATAAGACAAA-TA
1 AAAAAAGCTTTTCTTACCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGAGAAACT-
* * * * *
41550 AGAAGAGTCATACTAATCCCAATTTTTTTCACGATTAGGCACCATAAACATAGTCTTCTCTTAAG
65 AGAATAGTCATACTAATCCCTATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATAAG
* * * *
41615 GATTCACGATATTGAAGCTTTGG-TTTCACAAGAAAGGC-TTCTTTTCCACCAATTTTTGTAAAG
130 GATACACGATATTGATGCTTTGGTTTTGA-AAGAAAGGCTTTC-TTCCCACCAATTTTTGTAAAG
* * * * * **
41678 TCCAACTTCGTGCCTCAAATGAGACAAACATAGATTCCAGTAATAATCTTCATTAATTTTGTCAT
193 TCTAACTTCGTGCCTCAAATGAGACAAACATTGATTCTAGTAATGATCTTCATTCATTTTGGGAT
* * * ***
41743 TGGGGACTATAAACACATTCTTCACATTAGGATAAAGGATAATGGCAATTTTCTTTTGCATGGAA
258 TAGGCACTATAAACACATTCTCCACATTAGGATAAAGGATAATGATGATTTTCTTTTGCATGGAA
* * * * *
41808 ATCTTTTCTTTGCCTTATTTACCATAAAATTAAAGTCCATCTCTTAAATAAGGCAAGCACCGATT
323 ATCTTTTCTTTGCCTTATTTACCTTAAAATCAAAGTTCATCCCTTAAATAAGGCAAGCATCGATT
* * * * * * *
41873 CTCGTAACATTCTCCATTCTTTTCAAGATTAGAAACCATAAACACATTTCCTTCAATAGGATACA
388 CTCGTAAAAGTCTCCATTCTTTTCAAGATTGGGAACCAAAAACACATTCCCTTCATTAGGATACA
*
41938 TGACACTGATGCTTTGGTGACGCA
453 TGACATTGATGCTTTGGTGACGCA
**
41962 AAAAAAGCTTTTCTTACCACCGTTTTTGATAGAATCAAAGTTTACCTCTTAAATAAGAGAAACTA
1 AAAAAAGCTTTTCTTACCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGAGAAACTA
* * * * * * * *
42027 GAATGGTGATACTAATCCATGTTCTCTTCAGGATTAGGCACCATAAACGTAGTCTTCACAAAAGG
66 GAATAGTCATACTAATCCCTATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATAAGG
* * * * * * * *
42092 ATATATGATATTGATGCTTTGGTTTCGCAAGAAAAGCTTTCTACCCAGCAATTTTTGTAAAGTTT
131 ATACACGATATTGATGCTTTGGTTTTGAAAGAAAGGCTTTCTTCCCACCAATTTTTGTAAAGTCT
* * * * *
42157 GACTTCAT-CTCTTAAATGAGACAAACATTGATTATAGCAATGATCTTCATTCATTTTGGGATTA
196 AACTTCGTGC-CTCAAATGAGACAAACATTGATTCTAGTAATGATCTTCATTCATTTTGGGATTA
* * * * *
42221 AGCAATATAAACACATTCTCCACCTTAGGATAAAAAGATAATGATGATTTTCTTTTGCATAGAAA
260 GGCACTATAAACACATTCTCCACATTAGGAT-AAAGGATAATGATGATTTTCTTTTGCATGGAAA
* *
42286 TCTTTTCTTTGCCTTATTTACCTTAAAATCGAAGTTCATCCCTTAAATAAGGTAAGCATCGATTC
324 TCTTTTCTTTGCCTTATTTACCTTAAAATCAAAGTTCATCCCTTAAATAAGGCAAGCATCGATTC
*
42351 TCGTAACAAG-CTCCATTCTTTTCAAGATTAGGAACCAAAAACACATTCCCTTCATTAGGATACA
389 TCGTAA-AAGTCTCCATTCTTTTCAAGATTGGGAACCAAAAACACATTCCCTTCATTAGGATACA
* *
42415 AGACATTGATGCTTTAGTGACGCA
453 TGACATTGATGCTTTGGTGACGCA
*
42439 AAAAAAGCTTTTCTTACCACCGTTTTTGATAAAATCAAAGTTTGTCTCTTAAATAAGAGAAACTA
1 AAAAAAGCTTTTCTTACCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGAGAAACTA
* * *
42504 GAATAGTCATACTAATCCCTATTCTTTTAAGGATTAGGCACAATAAACGTAGTCTTCTCATAAGG
66 GAATAGTCATACTAATCCCTATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATAAGG
* * *
42569 ATACAAGATATTGATGCTTTGGTTTTGAAAGAAATGCTTTCTTCCC-CAAATTTTTGTAAAGTCT
131 ATACACGATATTGATGCTTTGGTTTTGAAAGAAAGGCTTTCTTCCCACCAATTTTTGTAAAGTCT
* * * *
42633 GACTTCGTGCCTCAAATGAGACAAGCATTGATTATAGTAATGATCTTCATTCATTTTGTGATTAG
196 AACTTCGTGCCTCAAATGAGACAAACATTGATTCTAGTAATGATCTTCATTCATTTTGGGATTAG
* * * ** * * * *
42698 GCACTGTTAACAAATTCTCCTTATTAGGATATATGTTATTGATGATTTTCTTTTGCATTGGAAAT
261 GCACTATAAACACATTCTCCACATTAGGATAAAGGATAATGATGATTTTCTTTTGCA-TGGAAAT
* * * *
42763 CTTTTCTTTGCAC-TATTTGCCTTAAAATC-AATTTCATCCCTTAAATAAAGCAAGCATTGATTC
325 CTTTTCTTTGC-CTTATTTACCTTAAAATCAAAGTTCATCCCTTAAATAAGGCAAGCATCGATTC
* * * * * *
42826 TCATAATAGTCTCCATTCTTGTCAAGATTGGGAACCAAAAACACATTCCTTTTAATAGGATACAT
389 TCGTAAAAGTCTCCATTCTTTTCAAGATTGGGAACCAAAAACACATTCCCTTCATTAGGATACAT
**
42891 GACATTGATGCTTTGGTGGTGCA
454 GACATTGATGCTTTGGTGACGCA
* * *
42914 AAAAAAGCTTTTCTTACCACCATTTTTGATAGAATCAAAGTTTGTCTCTTAAAGAAGACAAAC-A
1 AAAAAAGCTTTTCTTACCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGAGAAACTA
* * *
42978 TGAAGAGTCATACTAATCCCTATTCTTTTCAAGATTAGGCACCATAAATATAGTCTTCTCATAAG
66 -GAATAGTCATACTAATCCCTATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATAAG
* * * * ** *
43043 GATACATGAAATCGATGCTTTGGTTTTGCAAGAAAAACTTT-TCTCCCACCAATTTTTGCAAAGT
130 GATACACGATATTGATGCTTTGGTTTTGAAAGAAAGGCTTTCT-TCCCACCAATTTTTGTAAAGT
* * ** *
43107 CTAACTTCTTGCCTCAATTGAGACAAACAAGGATTCTAGTAAATGGA-CTTCATTCA-TTTGGCA
194 CTAACTTCGTGCCTCAAATGAGACAAACATTGATTCTAGT-AAT-GATCTTCATTCATTTTGG-G
* * * * *
43170 ATTAGGCATTATAAACACATTCTTCATATTGGGATAAATGATAATGATGATTTTCTTTTGCATGG
256 ATTAGGCACTATAAACACATTCTCCACATTAGGATAAAGGATAATGATGATTTTCTTTTGCATGG
*
43235 AAATCTTTTCTTTGTCTTATTTACCTTAAAATCAAAGTTCATCCCTTAAATAAGGCAAGCATCGA
321 AAATCTTTTCTTTGCCTTATTTACCTTAAAATCAAAGTTCATCCCTTAAATAAGGCAAGCATCGA
* * * *
43300 TTTTCGTAACAA-CCTCTATTCTTTTTAAGATTGGGAACCAAAAACACATTCCCTTCATTAGGAT
386 TTCTCGTAA-AAGTCTCCATTCTTTTCAAGATTGGGAACCAAAAACACATTCCCTTCATTAGGAT
* *
43364 ACATGATATTGATACTTTGGTGACGCA
450 ACATGACATTGATGCTTTGGTGACGCA
* * * * * *
43391 AAAAGAGCTTTTCATGCCACCGTATTTGATAGAATCAAAGTTTGCCCCTTAAATAAGAGAAACTA
1 AAAAAAGCTTTTCTTACCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGAGAAACTA
*
43456 GAATAGTCATACTAATCCCTATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCTTAAGG
66 GAATAGTCATACTAATCCCTATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATAAGG
* * * * * *
43521 ATACATGATATTCATGCTTTGGTTTCGCAAGAATA-GCTTTTTTCCCACCAATTTCTGTAAAGTC
131 ATACACGATATTGATGCTTTGGTTTTGAAAGAA-AGGCTTTCTTCCCACCAATTTTTGTAAAGTC
* * * ** *
43585 TAACTTCGTGCCTCAATTGAGATAAACATGGATTCTAGTAATGGCCTTCATTCATTTTGTGATTA
195 TAACTTCGTGCCTCAAATGAGACAAACATTGATTCTAGTAATGATCTTCATTCATTTTGGGATTA
* * * * *
43650 GGCACTATAAACACATTCTTCATATTAGGATAAAGGAAAATGATGATTTTCATTTGCGTGGAAAT
260 GGCACTATAAACACATTCTCCACATTAGGATAAAGGATAATGATGATTTTCTTTTGCATGGAAAT
*
43715 CTTTTCTTTGCCTTATTTACCTTAAAATCAAAGTTCAT-CCTTAAATAAGGCAAGCATCAATTCT
325 CTTTTCTTTGCCTTATTTACCTTAAAATCAAAGTTCATCCCTTAAATAAGGCAAGCATCGATTCT
* * * * * *
43779 CAGTAATAGTCTCCATTCTTTTCAAGACTAGGAACCAAAAACACATTCCCTTCATAAAGATACAC
390 C-GTAAAAGTCTCCATTCTTTTCAAGATTGGGAACCAAAAACACATTCCCTTCATTAGGATACAT
*
43844 GACATTTATGCTTTGGTGACGCA
454 GACATTGATGCTTTGGTGACGCA
* * *
43867 AAAAAAGCTTTTCTTATCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAAAAAGAAAAAACT
1 AAAAAAGCTTTTCTTACCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAG-AGAAACT
* * * *
43932 AGAATAGTCAAACTAATCCCTATTCTTTTCAGGATTAGGCAACATAAACGTAGTCTTCTTATAAG
65 AGAATAGTCATACTAATCCCTATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATAAG
* * * *
43997 GATAAACGATATTGATGCATTGGTTTTGAAAGAAAGGCTTTCTTCCC-CCTTATTTTTGAAAAGT
130 GATACACGATATTGATGCTTTGGTTTTGAAAGAAAGGCTTTCTTCCCACC-AATTTTTGTAAAGT
* * * * * *
44061 CTACCTTTGGGCCTCAAATGCGACTAACATTGATTCTAGTAATGATCTTCATTCATTTTGTGATT
194 CTAACTTCGTGCCTCAAATGAGACAAACATTGATTCTAGTAATGATCTTCATTCATTTTGGGATT
* * * * * *
44126 AGGCACTACAAACCCATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGAAAA
259 AGGCACTATAAACACATTCTCCACATTAGGATAAAGGATAATGATGATTTTCTTTTGCATGGAAA
** * * *
44191 TCTTTTCTTTGCCCAATTTACCTTAAAATCAAAGTTCATCCCTTAAATAAACGTAAGCATCAATT
324 TCTTTTCTTTGCCTTATTTACCTTAAAATCAAAGTTCATCCCTTAAAT-AAGGCAAGCATCGATT
* * * *
44256 CTCGTAAAAGTCTCCATTCATTTCAAGATTGGGAACCAAAAACACATTCCATTTATGAGGATACA
388 CTCGTAAAAGTCTCCATTCTTTTCAAGATTGGGAACCAAAAACACATTCCCTTCATTAGGATACA
*
44321 TGACATTGATACTTT-GTGACGCA
453 TGACATTGATGCTTTGGTGACGCA
* * * * *
44344 AAAAAGGCTTTTCTTACCATCATTTTTGATAGAATCAAAGTTTGTCTGTTAAATAAGGGAAACTA
1 AAAAAAGCTTTTCTTACCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGAGAAACTA
* *
44409 GAATAGTCATACTAATCCTTATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTC----GT
66 GAATAGTCATACTAATCCCTATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATAAGG
* *
44470 ATACACGATATTGATGGTTTGGTTTTGAAATG-AAGGCTTTCTTCCCCCCAA-TTTTGTAAAGTC
131 ATACACGATATTGATGCTTTGGTTTTGAAA-GAAAGGCTTTCTTCCCACCAATTTTTGTAAAGTC
* * * ** *
44533 TAACTTCATGCCTCAAATGAGACAAACATGGATTCTAGTAAGGGCCTTGATTCATTTTGGGATTA
195 TAACTTCGTGCCTCAAATGAGACAAACATTGATTCTAGTAATGATCTTCATTCATTTTGGGATTA
* * * * * *
44598 GGCACTATAAACACATTCTCCTCATTGGGATAAATGTTATTGATGATTTCCTTTTGCATGGAAAT
260 GGCACTATAAACACATTCTCCACATTAGGATAAAGGATAATGATGATTTTCTTTTGCATGGAAAT
* * * *
44663 CTTTTATTTGCCCTATTTACCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCG
325 CTTTTCTTTGCCTTATTTACCTTAAAATCAAAGTTCATCCCTTAAATAAGGCAAGCATCGATTCT
* * * *
44728 CGTAATAGTCTTCATTCTTTTTAAGATTGGGAGCCAAAAACACATTCCCTTCATTAGGATACATG
390 CGTAAAAGTCTCCATTCTTTTCAAGATTGGGAACCAAAAACACATTCCCTTCATTAGGATACATG
* *
44793 ACATTGATGCTATGGTGACGGA
455 ACATTGATGCTTTGGTGACGCA
* *
44815 AAAAAAGCTTTTCTTACCACCGTTTTTTATAGAATCAAAGTTTGTCTCTTAAATAAGACAAAC-A
1 AAAAAAGCTTTTCTTACCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGAGAAACTA
* * *
44879 TGAAAAGTCATACTAATCCCTATTCTTTTCAAGATTAGGCACCATAAACATAGTCTTCTCATTAG
66 -GAATAGTCATACTAATCCCTATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATAAG
* * * * * * *
44944 GATACACGATATTGATGCTTTGGTTTCGCAAGAAAAGTTTTTTTCCCACCAATATTTGCAAAGTC
130 GATACACGATATTGATGCTTTGGTTTTGAAAGAAAGGCTTTCTTCCCACCAATTTTTGTAAAGTC
* ** * * * *
45009 TAACTTCATGCCTCATTTGAGACAAATGA-GGATTCTAGTAAATGGA-CTTCAATCA-TTTGGTA
195 TAACTTCGTGCCTCAAATGAGACAAA-CATTGATTCTAGT-AAT-GATCTTCATTCATTTTGG-G
* * * *
45071 ATTAGGCATTATAAACCCATTCTTCACATTAGGATAAAGGCTAATGATGATTTTCTTTTGCATGG
256 ATTAGGCACTATAAACACATTCTCCACATTAGGATAAAGGATAATGATGATTTTCTTTTGCATGG
45136 AAATCTTTTCTTTGCCTTATTTACCTTAAAATCAAAGTTCATCCCTT
321 AAATCTTTTCTTTGCCTTATTTACCTTAAAATCAAAGTTCATCCCTT
45183 TAATTCCCTT
Statistics
Matches: 3613, Mismatches: 502, Indels: 107
0.86 0.12 0.03
Matches are distributed among these distances:
470 82 0.02
471 288 0.08
472 133 0.04
473 325 0.09
474 12 0.00
475 668 0.18
476 871 0.24
477 1135 0.31
478 82 0.02
479 17 0.00
ACGTcount: A:0.33, C:0.18, G:0.14, T:0.35
Consensus pattern (476 bp):
AAAAAAGCTTTTCTTACCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGAGAAACTA
GAATAGTCATACTAATCCCTATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATAAGG
ATACACGATATTGATGCTTTGGTTTTGAAAGAAAGGCTTTCTTCCCACCAATTTTTGTAAAGTCT
AACTTCGTGCCTCAAATGAGACAAACATTGATTCTAGTAATGATCTTCATTCATTTTGGGATTAG
GCACTATAAACACATTCTCCACATTAGGATAAAGGATAATGATGATTTTCTTTTGCATGGAAATC
TTTTCTTTGCCTTATTTACCTTAAAATCAAAGTTCATCCCTTAAATAAGGCAAGCATCGATTCTC
GTAAAAGTCTCCATTCTTTTCAAGATTGGGAACCAAAAACACATTCCCTTCATTAGGATACATGA
CATTGATGCTTTGGTGACGCA
Found at i:42726 original size:952 final size:952
Alignment explanation
Indices: 40538--45182 Score: 5972
Period size: 952 Copynumber: 4.9 Consensus size: 952
40528 TTCTTAACAC
* * * *
40538 AAAAAAGCTTTTCTTGCCGCCGTTTTTGATAGAGTTAAAGTTTGTCTCTTAAATAAGAGAAACTA
1 AAAAAAGCTTTTCTTACCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGAGAAACTA
* * * * **
40603 GAATAGTCATACTAATCCTTATTGTTTTCAGGAATAGGCAACATAAATGTAGTCTTCTCATAAGG
66 GAATAGTCATACTAATCCCTATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATAAGG
* * * * *
40668 ATACACGATATTGATGCTTTCGTTTTGAAAGAAAGGATTTCTTTCCCACAATTTTTCTAAAGTCA
131 ATACACGATATTGATGCTTTGGTTTTGAAAGAAAGGCTTTCTTCCCCA-AATTTTTGTAAAGTCT
* * * *
40733 AACTTCGTGCCTCAAAAGAGACAAACATTGATTCTAGTAATAATCTTCATTCATTTTGGGATTAG
195 AACTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAG
* * * * *
40798 GCAATATAAACACATTATCCACATTAGGATAAACGATAATGATGATTTTCTTTTGCTTGAAAATC
260 GCACTATAAACACATTCTCCACATTAGGATAAAGGATAATGATGATTTTCTTTTGCATGGAAATC
* * * ** *
40863 TTTTGTTTGCCTTATTTACCTTAAAATCAAAGTTCAACCCTTAAAAAAGGTGAGCATCAATTCTC
325 TTTTCTTTGCCTTATTTACCTTAAAATCAAAGTTCATCCCTTAAATAAGGCAAGCATCGATTCTC
* * * * * * *
40928 GTAATAATCTCCATTCTTTTCAAGTTTGGGAACTAAAAACACATTCCCTTCATTTGGATACAAGG
390 GTAATAGTCTCCATTCTTTTCAAGATTGGGAACCAAAAACACATTCCCTTCAATAGGATACATGA
* * * * * *
40993 CATTGATCCATTGTTGATGCAAAAAATGCTTTTCTTACCACCGTTTTTTATAGAATCAAAGTTTG
455 CATTGATGCTTTGGTGACGCAAAAAAAGCTTTTCTTACCACCGTTTTTGATAGAATCAAAGTTTG
* * * *
41058 TCTCTTAACTAAGAGAAACTAGAATAGTCATACTAATCCCTGTTCTTTTTAGGATTAGGCACCAT
520 TCTCTTAAATAAGACAAACTAGAATAGTCATACTAATCCCTATTCTTTTCAGGATTAGGCACCAT
* * *
41123 AAACATAGTCTTCTCATAAGGATACACGATATTGA---TTCGGTTTTGAAAGAAAGGCTTTCTTC
585 AAACATAGTCTTCTCATAAGGATACACGATATTGATGCTTTGGTTTTGCAAGAAAAGCTTTCTTC
* * * * * * * * *
41185 CCCCCAATTTTTGTAAAGTTTGACTTCTTGCCTCAAATAAGACAGACATTGATTCTAGTAATAAT
650 CCACCAATTTTTGCAAAGTCTAACTTCATGCCTCAAATGAGACAAACATTGATTCTAGAAATGAT
* * *
41250 CCTCATTCATTTTGGGATTAGGCAATATAAACACAATCTCCACATTAGGATAAAGGATAATGAAG
715 CTTCATTCATTTTGGGATTAGGCAATATAAACACATTCTCCACATTAGGATAAAGGATAATGATG
** * * * * *
41315 ATTTTCTTTTGCGCGAAAATCTTTTGTTTGCCCTATTTACCTTAAAATCAAAGTTTATCTCTTAA
780 ATTTTCTTTTGCATGGAAATCTTTTCTTTGCCTTATTTACCTTAAAATCAAAGTTCATCCCTTAA
*
41380 ATAAGGCAAGCATCGATTCTCGTAAC-AGTGTCCATTCTTTTCAAGATTGGGAACCAAAAACACA
845 ATAAGGCAAGCATCGATTCTCGTAACAAGTCTCCATTCTTTTCAAGATTGGGAACCAAAAACACA
* * * **
41444 TTCCCTTCATTAAGATACATGACATTGATGCTCTAACGACGCA
910 TTCCCTTCATTAGGATACATGACATTGATACTTTAGTGACGCA
* * * * * *
41487 AAAAAGGCTTTACTTACCCCCGTTTTTTATAAAATCAAAGTTTGTCT-TTAAATAAGACAAA-TA
1 AAAAAAGCTTTTCTTACCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGAGAAACT-
* * * * *
41550 AGAAGAGTCATACTAATCCCAATTTTTTTCACGATTAGGCACCATAAACATAGTCTTCTCTTAAG
65 AGAATAGTCATACTAATCCCTATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATAAG
* * * *
41615 GATTCACGATATTGAAGCTTTGG-TTTCACAAGAAAGGCTTCTTTTCCACC-AATTTTTGTAAAG
130 GATACACGATATTGATGCTTTGGTTTTGA-AAGAAAGGCTT-TCTTCC-CCAAATTTTTGTAAAG
* * * * * *
41678 TCCAACTTCGTGCCTCAAATGAGACAAACATAGATTCCAGTAATAATCTTCATTAATTTTGTCAT
192 TCTAACTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGAT
* * * ***
41743 TGGGGACTATAAACACATTCTTCACATTAGGATAAAGGATAATGGCAATTTTCTTTTGCATGGAA
257 TAGGCACTATAAACACATTCTCCACATTAGGATAAAGGATAATGATGATTTTCTTTTGCATGGAA
* * * * *
41808 ATCTTTTCTTTGCCTTATTTACCATAAAATTAAAGTCCATCTCTTAAATAAGGCAAGCACCGATT
322 ATCTTTTCTTTGCCTTATTTACCTTAAAATCAAAGTTCATCCCTTAAATAAGGCAAGCATCGATT
* * * * * *
41873 CTCGTAACATTCTCCATTCTTTTCAAGATTAGAAACCATAAACACATTTCCTTCAATAGGATACA
387 CTCGTAATAGTCTCCATTCTTTTCAAGATTGGGAACCAAAAACACATTCCCTTCAATAGGATACA
*
41938 TGACACTGATGCTTTGGTGACGCAAAAAAAGCTTTTCTTACCACCGTTTTTGATAGAATCAAAGT
452 TGACATTGATGCTTTGGTGACGCAAAAAAAGCTTTTCTTACCACCGTTTTTGATAGAATCAAAGT
** * * * * * *
42003 TTACCTCTTAAATAAGAGAAACTAGAATGGTGATACTAATCCATGTTCTCTTCAGGATTAGGCAC
517 TTGTCTCTTAAATAAGACAAACTAGAATAGTCATACTAATCCCTATTCTTTTCAGGATTAGGCAC
* * * * * *
42068 CATAAACGTAGTCTTCACAAAAGGATATATGATATTGATGCTTTGGTTTCGCAAGAAAAGCTTTC
582 CATAAACATAGTCTTCTCATAAGGATACACGATATTGATGCTTTGGTTTTGCAAGAAAAGCTTTC
* * * * * * * *
42133 TACCCAGCAATTTTTGTAAAGTTTGACTTCAT-CTCTTAAATGAGACAAACATTGATTATAGCAA
647 TTCCCACCAATTTTTGCAAAGTCTAACTTCATGC-CTCAAATGAGACAAACATTGATTCTAGAAA
* * *
42197 TGATCTTCATTCATTTTGGGATTAAGCAATATAAACACATTCTCCACCTTAGGATAAAAAGATAA
711 TGATCTTCATTCATTTTGGGATTAGGCAATATAAACACATTCTCCACATTAGGAT-AAAGGATAA
* *
42262 TGATGATTTTCTTTTGCATAGAAATCTTTTCTTTGCCTTATTTACCTTAAAATCGAAGTTCATCC
775 TGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCTTATTTACCTTAAAATCAAAGTTCATCC
* *
42327 CTTAAATAAGGTAAGCATCGATTCTCGTAACAAG-CTCCATTCTTTTCAAGATTAGGAACCAAAA
840 CTTAAATAAGGCAAGCATCGATTCTCGTAACAAGTCTCCATTCTTTTCAAGATTGGGAACCAAAA
* *
42391 ACACATTCCCTTCATTAGGATACAAGACATTGATGCTTTAGTGACGCA
905 ACACATTCCCTTCATTAGGATACATGACATTGATACTTTAGTGACGCA
*
42439 AAAAAAGCTTTTCTTACCACCGTTTTTGATAAAATCAAAGTTTGTCTCTTAAATAAGAGAAACTA
1 AAAAAAGCTTTTCTTACCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGAGAAACTA
* * *
42504 GAATAGTCATACTAATCCCTATTCTTTTAAGGATTAGGCACAATAAACGTAGTCTTCTCATAAGG
66 GAATAGTCATACTAATCCCTATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATAAGG
* * *
42569 ATACAAGATATTGATGCTTTGGTTTTGAAAGAAATGCTTTCTTCCCCAAATTTTTGTAAAGTCTG
131 ATACACGATATTGATGCTTTGGTTTTGAAAGAAAGGCTTTCTTCCCCAAATTTTTGTAAAGTCTA
* * *
42634 ACTTCGTGCCTCAAATGAGACAAGCATTGATTATAGTAATGATCTTCATTCATTTTGTGATTAGG
196 ACTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGG
* * * ** * * * *
42699 CACTGTTAACAAATTCTCCTTATTAGGATATATGTTATTGATGATTTTCTTTTGCATTGGAAATC
261 CACTATAAACACATTCTCCACATTAGGATAAAGGATAATGATGATTTTCTTTTGCA-TGGAAATC
* * * *
42764 TTTTCTTTGCAC-TATTTGCCTTAAAATC-AATTTCATCCCTTAAATAAAGCAAGCATTGATTCT
325 TTTTCTTTGC-CTTATTTACCTTAAAATCAAAGTTCATCCCTTAAATAAGGCAAGCATCGATTCT
* * * *
42827 CATAATAGTCTCCATTCTTGTCAAGATTGGGAACCAAAAACACATTCCTTTTAATAGGATACATG
389 CGTAATAGTCTCCATTCTTTTCAAGATTGGGAACCAAAAACACATTCCCTTCAATAGGATACATG
** *
42892 ACATTGATGCTTTGGTGGTGCAAAAAAAGCTTTTCTTACCACCATTTTTGATAGAATCAAAGTTT
454 ACATTGATGCTTTGGTGACGCAAAAAAAGCTTTTCTTACCACCGTTTTTGATAGAATCAAAGTTT
* * *
42957 GTCTCTTAAAGAAGACAAAC-ATGAAGAGTCATACTAATCCCTATTCTTTTCAAGATTAGGCACC
519 GTCTCTTAAATAAGACAAACTA-GAATAGTCATACTAATCCCTATTCTTTTCAGGATTAGGCACC
* * * * *
43021 ATAAATATAGTCTTCTCATAAGGATACATGAAATCGATGCTTTGGTTTTGCAAGAAAAACTTT-T
583 ATAAACATAGTCTTCTCATAAGGATACACGATATTGATGCTTTGGTTTTGCAAGAAAAGCTTTCT
* * **
43085 CTCCCACCAATTTTTGCAAAGTCTAACTTCTTGCCTCAATTGAGACAAACAAGGATTCTAGTAAA
648 -TCCCACCAATTTTTGCAAAGTCTAACTTCATGCCTCAAATGAGACAAACATTGATTCTAG-AAA
* * * * * *
43150 TGGA-CTTCATTCA-TTTGGCAATTAGGCATTATAAACACATTCTTCATATTGGGATAAATGATA
711 T-GATCTTCATTCATTTTGG-GATTAGGCAATATAAACACATTCTCCACATTAGGATAAAGGATA
*
43213 ATGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGTCTTATTTACCTTAAAATCAAAGTTCATC
774 ATGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCTTATTTACCTTAAAATCAAAGTTCATC
* * * *
43278 CCTTAAATAAGGCAAGCATCGATTTTCGTAACAA-CCTCTATTCTTTTTAAGATTGGGAACCAAA
839 CCTTAAATAAGGCAAGCATCGATTCTCGTAACAAGTCTCCATTCTTTTCAAGATTGGGAACCAAA
* *
43342 AACACATTCCCTTCATTAGGATACATGATATTGATACTTTGGTGACGCA
904 AACACATTCCCTTCATTAGGATACATGACATTGATACTTTAGTGACGCA
* * * * * *
43391 AAAAGAGCTTTTCATGCCACCGTATTTGATAGAATCAAAGTTTGCCCCTTAAATAAGAGAAACTA
1 AAAAAAGCTTTTCTTACCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGAGAAACTA
*
43456 GAATAGTCATACTAATCCCTATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCTTAAGG
66 GAATAGTCATACTAATCCCTATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATAAGG
* * * * * * *
43521 ATACATGATATTCATGCTTTGGTTTCGCAAGAATA-GCTTTTTTCCCACCAATTTCTGTAAAGTC
131 ATACACGATATTGATGCTTTGGTTTTGAAAGAA-AGGCTTTCTTCCC-CAAATTTTTGTAAAGTC
* * **
43585 TAACTTCGTGCCTCAATTGAGATAAACATGGATTCTAGTAATGGCCTTCATTCATTTTGTGATTA
194 TAACTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTA
* * * * *
43650 GGCACTATAAACACATTCTTCATATTAGGATAAAGGAAAATGATGATTTTCATTTGCGTGGAAAT
259 GGCACTATAAACACATTCTCCACATTAGGATAAAGGATAATGATGATTTTCTTTTGCATGGAAAT
*
43715 CTTTTCTTTGCCTTATTTACCTTAAAATCAAAGTTCAT-CCTTAAATAAGGCAAGCATCAATTCT
324 CTTTTCTTTGCCTTATTTACCTTAAAATCAAAGTTCATCCCTTAAATAAGGCAAGCATCGATTCT
* * *
43779 CAGTAATAGTCTCCATTCTTTTCAAGACTAGGAACCAAAAACACATTCCCTTC-ATAAAGATACA
389 C-GTAATAGTCTCCATTCTTTTCAAGATTGGGAACCAAAAACACATTCCCTTCAAT-AGGATACA
* * *
43843 CGACATTTATGCTTTGGTGACGCAAAAAAAGCTTTTCTTATCACCGTTTTTGATAGAATCAAAGT
452 TGACATTGATGCTTTGGTGACGCAAAAAAAGCTTTTCTTACCACCGTTTTTGATAGAATCAAAGT
* * *
43908 TTGTCTCTTAAAAAAGAAAAAACTAGAATAGTCAAACTAATCCCTATTCTTTTCAGGATTAGGCA
517 TTGTCTCTTAAATAAG-ACAAACTAGAATAGTCATACTAATCCCTATTCTTTTCAGGATTAGGCA
* * * * * * *
43973 ACATAAACGTAGTCTTCTTATAAGGATAAACGATATTGATGCATTGGTTTTGAAAGAAAGGCTTT
581 CCATAAACATAGTCTTCTCATAAGGATACACGATATTGATGCTTTGGTTTTGCAAGAAAAGCTTT
* * * *** * * *
44038 CTTCCC-CCTTATTTTTGAAAAGTCTACCTTTGGGCCTCAAATGCGACTAACATTGATTCTAGTA
646 CTTCCCACC-AATTTTTGCAAAGTCTAACTTCATGCCTCAAATGAGACAAACATTGATTCTAGAA
* * * * * * *
44102 ATGATCTTCATTCATTTTGTGATTAGGCACTACAAACCCATTCTCCTCATTAGGATAAATGATAT
710 ATGATCTTCATTCATTTTGGGATTAGGCAATATAAACACATTCTCCACATTAGGATAAAGGATAA
* **
44167 TGATGATTTTCTTTTGCATGAAAATCTTTTCTTTGCCCAATTTACCTTAAAATCAAAGTTCATCC
775 TGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCTTATTTACCTTAAAATCAAAGTTCATCC
* * * *
44232 CTTAAATAAACGTAAGCATCAATTCTCGTAA-AAGTCTCCATTCATTTCAAGATTGGGAACCAAA
840 CTTAAAT-AAGGCAAGCATCGATTCTCGTAACAAGTCTCCATTCTTTTCAAGATTGGGAACCAAA
* * *
44296 AACACATTCCATTTATGAGGATACATGACATTGATACTTT-GTGACGCA
904 AACACATTCCCTTCATTAGGATACATGACATTGATACTTTAGTGACGCA
* * * * *
44344 AAAAAGGCTTTTCTTACCATCATTTTTGATAGAATCAAAGTTTGTCTGTTAAATAAGGGAAACTA
1 AAAAAAGCTTTTCTTACCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGAGAAACTA
* *
44409 GAATAGTCATACTAATCCTTATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTC----GT
66 GAATAGTCATACTAATCCCTATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATAAGG
* *
44470 ATACACGATATTGATGGTTTGGTTTTGAAATG-AAGGCTTTCTTCCCCCCAA-TTTTGTAAAGTC
131 ATACACGATATTGATGCTTTGGTTTTGAAA-GAAAGGCTTTCTT-CCCCAAATTTTTGTAAAGTC
* * ** * *
44533 TAACTTCATGCCTCAAATGAGACAAACATGGATTCTAGTAAGGGCCTTGATTCATTTTGGGATTA
194 TAACTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTA
* * * * * *
44598 GGCACTATAAACACATTCTCCTCATTGGGATAAATGTTATTGATGATTTCCTTTTGCATGGAAAT
259 GGCACTATAAACACATTCTCCACATTAGGATAAAGGATAATGATGATTTTCTTTTGCATGGAAAT
* * * *
44663 CTTTTATTTGCCCTATTTACCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCG
324 CTTTTCTTTGCCTTATTTACCTTAAAATCAAAGTTCATCCCTTAAATAAGGCAAGCATCGATTCT
* * * *
44728 CGTAATAGTCTTCATTCTTTTTAAGATTGGGAGCCAAAAACACATTCCCTTCATTAGGATACATG
389 CGTAATAGTCTCCATTCTTTTCAAGATTGGGAACCAAAAACACATTCCCTTCAATAGGATACATG
* * *
44793 ACATTGATGCTATGGTGACGGAAAAAAAGCTTTTCTTACCACCGTTTTTTATAGAATCAAAGTTT
454 ACATTGATGCTTTGGTGACGCAAAAAAAGCTTTTCTTACCACCGTTTTTGATAGAATCAAAGTTT
* *
44858 GTCTCTTAAATAAGACAAAC-ATGAAAAGTCATACTAATCCCTATTCTTTTCAAGATTAGGCACC
519 GTCTCTTAAATAAGACAAACTA-GAATAGTCATACTAATCCCTATTCTTTTCAGGATTAGGCACC
* * * *
44922 ATAAACATAGTCTTCTCATTAGGATACACGATATTGATGCTTTGGTTTCGCAAGAAAAGTTTTTT
583 ATAAACATAGTCTTCTCATAAGGATACACGATATTGATGCTTTGGTTTTGCAAGAAAAGCTTTCT
* ** * *
44987 TCCCACCAATATTTGCAAAGTCTAACTTCATGCCTCATTTGAGACAAATGA-GGATTCTAGTAAA
648 TCCCACCAATTTTTGCAAAGTCTAACTTCATGCCTCAAATGAGACAAA-CATTGATTCTAG-AAA
* * * * * *
45051 TGGA-CTTCAATCA-TTTGGTAATTAGGCATTATAAACCCATTCTTCACATTAGGATAAAGGCTA
711 T-GATCTTCATTCATTTTGG-GATTAGGCAATATAAACACATTCTCCACATTAGGATAAAGGATA
45114 ATGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCTTATTTACCTTAAAATCAAAGTTCATC
774 ATGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCTTATTTACCTTAAAATCAAAGTTCATC
45179 CCTT
839 CCTT
45183 TAATTCCCTT
Statistics
Matches: 3196, Mismatches: 452, Indels: 97
0.85 0.12 0.03
Matches are distributed among these distances:
946 1 0.00
947 149 0.05
948 881 0.28
949 108 0.03
950 7 0.00
951 128 0.04
952 1019 0.32
953 667 0.21
954 234 0.07
955 2 0.00
ACGTcount: A:0.33, C:0.18, G:0.14, T:0.35
Consensus pattern (952 bp):
AAAAAAGCTTTTCTTACCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGAGAAACTA
GAATAGTCATACTAATCCCTATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATAAGG
ATACACGATATTGATGCTTTGGTTTTGAAAGAAAGGCTTTCTTCCCCAAATTTTTGTAAAGTCTA
ACTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGG
CACTATAAACACATTCTCCACATTAGGATAAAGGATAATGATGATTTTCTTTTGCATGGAAATCT
TTTCTTTGCCTTATTTACCTTAAAATCAAAGTTCATCCCTTAAATAAGGCAAGCATCGATTCTCG
TAATAGTCTCCATTCTTTTCAAGATTGGGAACCAAAAACACATTCCCTTCAATAGGATACATGAC
ATTGATGCTTTGGTGACGCAAAAAAAGCTTTTCTTACCACCGTTTTTGATAGAATCAAAGTTTGT
CTCTTAAATAAGACAAACTAGAATAGTCATACTAATCCCTATTCTTTTCAGGATTAGGCACCATA
AACATAGTCTTCTCATAAGGATACACGATATTGATGCTTTGGTTTTGCAAGAAAAGCTTTCTTCC
CACCAATTTTTGCAAAGTCTAACTTCATGCCTCAAATGAGACAAACATTGATTCTAGAAATGATC
TTCATTCATTTTGGGATTAGGCAATATAAACACATTCTCCACATTAGGATAAAGGATAATGATGA
TTTTCTTTTGCATGGAAATCTTTTCTTTGCCTTATTTACCTTAAAATCAAAGTTCATCCCTTAAA
TAAGGCAAGCATCGATTCTCGTAACAAGTCTCCATTCTTTTCAAGATTGGGAACCAAAAACACAT
TCCCTTCATTAGGATACATGACATTGATACTTTAGTGACGCA
Found at i:44980 original size:159 final size:157
Alignment explanation
Indices: 41010--44994 Score: 852
Period size: 159 Copynumber: 25.2 Consensus size: 157
41000 CCATTGTTGA
* * *
41010 TGCAA-AAAATGCTTTTCTTACCACCGTTTTTTATAGAATCAAAGTTTGTCTCTTAACTAAGAGA
1 TGCAAGAAAA-GCTTTTCTTACCACCATTTTTTATA-AATCAAAGTTTGTC-CTTAAATAAGACA
* * * * *
41074 AAC-TAGAATAGTCATACTAATCCCTGTTCTTTTTAGGATTAGGCACCATAAACATAGTCTTCTC
63 AACAT-GAATAGTCATACTAATCCCTATTCTTTTCAAGATTAGGCACCATAAACACATTCTTCTC
* * *
41138 ATAAGGATACACGATATTGA---TTCGGTTT
127 ATTAGGATACATGATATTGATGCTTTGGTTT
* * * * * * *** * *
41166 TGAAAGAAAGGC-TTTCTTCCCCCCAATTTTTGTAAAGTTTGACTTCT-TGCCTCAAATAAGACA
1 TGCAAGAAAAGCTTTTCTTACCACCATTTTTTATAAA-TCAAAGTT-TGT-CCTTAAATAAGACA
* * ** ** *
41229 GACATTG-AT--TCTAGTAATAAT-CCTCATTCATTTT-GGGATTAGGCAATATAAACACAATCT
63 AACA-TGAATAGTC-A-TACTAATCCCT-ATTC-TTTTCAAGATTAGGCACCATAAACACATTCT
* * * * * * * **
41289 CCACATTAGGATAAAGGATAATGAAGATTTTCTTT
123 TCTCATTAGGATACATGATATTGATGCTTTGGTTT
** * * * * * * *
41324 TGCGCGAAAATCTTTTGTTTGCC-CTATTTACCTTA-AAATCAAAGTTTATCTCTTAAATAAGGC
1 TGCAAGAAAAGCTTTT-CTTACCACCATTT--TTTATAAATCAAAGTTTGTC-CTTAAATAAGAC
* ** * * * * * * *
41387 AAGCATCG-ATTCTCGTAAC-AGTGTCC-ATTCTTTTCAAGATTGGGAACCAAAAACACATTC-C
62 AAACAT-GAATAGTCAT-ACTAAT-CCCTATTCTTTTCAAGATTAGGCACCATAAACACATTCTT
* * * *****
41448 CTTCATTAAGATACATGACATTGATGCTCTAACGA
124 C-TCATTAGGATACATGATATTGATGCTTTGGTTT
* * * * *
41483 CGCAA-AAAAGGCTTTACTTACCCCCGTTTTTTATAAAATCAAAGTTTGTCTTTAAATAAGACAA
1 TGCAAGAAAA-GCTTTTCTTACCACCATTTTTTAT-AAATCAAAGTTTGTCCTTAAATAAGACAA
* * * * * * * *
41547 ATAAGAAGAGTCATACTAATCCCAATTTTTTTCACGATTAGGCACCATAAACATAGTCTTCTC-T
64 ACATGAATAGTCATACTAATCCCTATTCTTTTCAAGATTAGGCACCATAAACACATTCTTCTCAT
* * *
41611 TAAGGATTCACGATATTGAAGCTTTGGTTT
129 T-AGGATACATGATATTGATGCTTTGGTTT
** * * * * * * * *
41641 CACAAGAAAGGCTTCTT-TT-CCACCAATTTTTGTAAAGTCCAACTTCGTGCCTCAAATGAGACA
1 TGCAAGAAAAGCTT-TTCTTACCACCATTTTTTATAAA-TCAAAGTTTGT-CCTTAAATAAGACA
* * * *** * * *
41704 AACAT-AGAT--TCCAGTAATAAT-CTTCATTAATTTT-GTCATTGGGGACTATAAACACATTCT
63 AACATGA-ATAGT-CA-TACTAATCCCT-ATT-CTTTTCAAGATTAGGCACCATAAACACATTCT
* * * * **
41764 TCACATTAGGATAAAGGATAATG--GCAATTTTCTTT
123 TCTCATTAGGATACATGATATTGATGC--TTTGGTTT
* * * * ** *** * *** *
41799 TGCATGGAAATCTTTTCTTTGCC-TTATTTACCATAAAATTAAAGTCCATCTCTTAAATAAGGCA
1 TGCAAGAAAAGCTTTTC-TTACCACCATTTTTTAT-AAATCAAAGTTTGTC-CTTAAATAAGACA
* * ** * * ** *
41863 AGCACCG-ATTCTCGTAAC-ATTCTCC-ATTCTTTTCAAGATTAGAAACCATAAACACATT-TCC
63 AACA-TGAATAGTCAT-ACTAATC-CCTATTCTTTTCAAGATTAGGCACCATAAACACATTCTTC
* * * **
41924 TTCAATAGGATACATGACACTGATGCTTTGGTGA
125 -TCATTAGGATACATGATATTGATGCTTTGGTTT
* * * * ** *
41958 CGCAAAAAAAGCTTTTCTTACCACCGTTTTTGATAGAATCAAAGTTTACCTCTTAAATAAGAGAA
1 TGCAAGAAAAGCTTTTCTTACCACCATTTTTTATA-AATCAAAGTTTGTC-CTTAAATAAGACAA
* * * * * * ** * *
42023 AC-TAGAATGGTGATACTAATCCATGTTCTCTTCAGGATTAGGCACCATAAACGTAGTCTTCACA
64 ACAT-GAATAGTCATACTAATCCCTATTCTTTTCAAGATTAGGCACCATAAACACATTCTTCTCA
** *
42087 AAAGGATATATGATATTGATGCTTTGGTTT
128 TTAGGATACATGATATTGATGCTTTGGTTT
* * * * *** * ** *
42117 CGCAAGAAAAGC-TTTC-TACCCAGCAATTTTTGTAAAGTTTGACTTCATCTCTTAAATGAGACA
1 TGCAAGAAAAGCTTTTCTTA-CCACCATTTTTTATAAA-TCAAAGTTTGTC-CTTAAATAAGACA
* * ** * **
42180 AACATTGATTATAG-CA-A-TGAT-CTTCATTCATTTT-GGGATTAAGCAATATAAACACATTCT
63 AACA-TGA--ATAGTCATACTAATCCCT-ATTC-TTTTCAAGATTAGGCACCATAAACACATTCT
* * * * * * * **
42240 CCACCTTAGGATAAAAAGATAATGATGATTTTCTTT
123 TCTCATTAGGAT-ACATGATATTGATGCTTTGGTTT
* * ** * * ** *
42276 TGCATAG-AAATCTTTTCTTTGCC-TTATTTACCTTA-AAATCGAAGTTCATCCCTTAAATAAGG
1 TGCA-AGAAAAGCTTTTC-TTACCACCATTT--TTTATAAATCAAAGTTTGT-CCTTAAATAAGA
* * ** * * * *
42338 TAAGCATCG-ATTCTCGTAAC-AAGCTCC-ATTCTTTTCAAGATTAGGAACCAAAAACACATTC-
61 CAAACAT-GAATAGTCAT-ACTAATC-CCTATTCTTTTCAAGATTAGGCACCATAAACACATTCT
* * * * **
42399 CCTTCATTAGGATACAAGACATTGATGCTTTAGTGA
123 TC-TCATTAGGATACATGATATTGATGCTTTGGTTT
* * * * *
42435 CGCAAAAAAAGCTTTTCTTACCACCGTTTTTGATAAAATCAAAGTTTGTCTCTTAAATAAGAGAA
1 TGCAAGAAAAGCTTTTCTTACCACCATTTTTTAT-AAATCAAAGTTTGTC-CTTAAATAAGACAA
* ** *
42500 AC-TAGAATAGTCATACTAATCCCTATTCTTTT-AAGGATTAGGCACAATAAACGTAGTCTTCTC
64 ACAT-GAATAGTCATACTAATCCCTATTCTTTTCAA-GATTAGGCACCATAAACACATTCTTCTC
* *
42563 ATAAGGATACAAGATATTGATGCTTTGGTTT
127 ATTAGGATACATGATATTGATGCTTTGGTTT
* * * * ** * * * *
42594 TGAAAGAAATGC-TTTCTT-CC-CCAAATTTTTGTAAAGTCTGACTTCGTGCCTCAAATGAGACA
1 TGCAAGAAAAGCTTTTCTTACCACC-ATTTTTTATAAA-TCAAAGTTTGT-CCTTAAATAAGACA
* * * ** ** * *
42656 AGCATTGATTATAGT-A-A-TGAT-CTTCATTCATTTT-GTGATTAGGCACTGTTAACAAATTCT
63 AACA-TGA--ATAGTCATACTAATCCCT-ATTC-TTTTCAAGATTAGGCACCATAAACACATTCT
* * * * * **
42716 CCTTATTAGGATATATGTTATTGATGATTTTCTTT
123 TCTCATTAGGATACATGATATTGATGCTTTGGTTT
* * * ** * * *
42751 TGCATTGGAAATCTTTTCTTTGCACTATTTGCCTTA-AAATC-AA-TTTCATCCCTTAAATAA-A
1 TGCA-AGAAAAGCTTTTCTTACCACCATTT--TTTATAAATCAAAGTTT-GT-CCTTAAATAAGA
* ** * * * * * *
42812 GCAAGCATTG-ATTCTCATAATAGTCTCC-ATTCTTGTCAAGATTGGGAACCAAAAACACATTCC
61 -CAAACA-TGAATAGTCATACTAATC-CCTATTCTTTTCAAGATTAGGCACCATAAACACATT-C
* * * **
42875 TT-TTAATAGGATACATGACATTGATGCTTTGGTGG
122 TTCTCATTAGGATACATGATATTGATGCTTTGGTTT
* * *
42910 TGCAAAAAAAGCTTTTCTTACCACCATTTTTGATAGAATCAAAGTTTGTCTCTTAAAGAAGACAA
1 TGCAAGAAAAGCTTTTCTTACCACCATTTTTTATA-AATCAAAGTTTGTC-CTTAAATAAGACAA
* * * *
42975 ACATGAAGAGTCATACTAATCCCTATTCTTTTCAAGATTAGGCACCATAAATATAGTCTTCTCAT
64 ACATGAATAGTCATACTAATCCCTATTCTTTTCAAGATTAGGCACCATAAACACATTCTTCTCAT
* * *
43040 AAGGATACATGAAATCGATGCTTTGGTTT
129 TAGGATACATGATATTGATGCTTTGGTTT
* * * ** * * * * *
43069 TGCAAGAAAAACTTTTC-TCCCACCAATTTTTGCAAAGTCTAACTTCT-TGCCTCAATTGAGACA
1 TGCAAGAAAAGCTTTTCTTACCACCATTTTTTATAAA-TCAAAGTT-TGT-CCTTAAATAAGACA
* * * * * * **
43132 AACAAGGAT--TC-TAGTAAATGGACTTCATTCATTTGGC-A-ATTAGGCATTATAAACACATTC
63 AACATGAATAGTCATACT-AAT--CCCT-ATTC-TTT-TCAAGATTAGGCACCATAAACACATTC
* * * * **
43192 TTCAT-ATTGGGATAAATGATAATGATGATTTTCTTT
122 TTC-TCATTAGGATACATGATATTGATGCTTTGGTTT
* * * ** ** * ** *
43228 TGCATGGAAATCTTTTCTTTGTC-TTATTTACCTTA-AAATCAAAGTTCATCCCTTAAATAAGGC
1 TGCAAGAAAAGCTTTTC-TTACCACCATTT--TTTATAAATCAAAGTTTGT-CCTTAAATAAGAC
* ** * * * * * *
43291 AAGCATCG-ATTTTCGTAAC-AA-CCTCTATTCTTTTTAAGATTGGGAACCAAAAACACATTC-C
62 AAACAT-GAATAGTCAT-ACTAATCC-CTATTCTTTTCAAGATTAGGCACCATAAACACATTCTT
* **
43352 CTTCATTAGGATACATGATATTGATACTTTGGTGA
124 C-TCATTAGGATACATGATATTGATGCTTTGGTTT
* * * * * * * *
43387 CGCAA-AAAGAGCTTTTCATGCCACCGTATTTGATAGAATCAAAGTTTGCCCCTTAAATAAGAGA
1 TGCAAGAAA-AGCTTTTCTTACCACCATTTTTTATA-AATCAAAGTTTG-TCCTTAAATAAGACA
* * *
43451 AAC-TAGAATAGTCATACTAATCCCTATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTC
63 AACAT-GAATAGTCATACTAATCCCTATTCTTTTCAAGATTAGGCACCATAAACACATTCTTCTC
*
43515 -TTAAGGATACATGATATTCATGCTTTGGTTT
127 ATT-AGGATACATGATATTGATGCTTTGGTTT
* * * * * * * * * * * * *
43546 CGCAAGAATAGCTTTT-TTCCCACCAATTTCTGTAAAGTCTAACTTCGTGCCTCAATTGAGATAA
1 TGCAAGAAAAGCTTTTCTTACCACCATTTTTTATAAA-TCAAAGTTTGT-CCTTAAATAAGACAA
* * * ** *
43610 ACATGGAT--TC-TAGTAATGGCCTTCATTCATTTT-GTGATTAGGCACTATAAACACATTCTTC
64 ACATGAATAGTCATACTAAT--CCCT-ATTC-TTTTCAAGATTAGGCACCATAAACACATTCTTC
* * * * * ***
43671 AT-ATTAGGATAAAGGAAAATGATGATTTTCATT
125 -TCATTAGGATACATGATATTGATGCTTTGGTTT
** * * * ** * ** *
43704 TGCGTGGAAATCTTTTCTTTGCC-TTATTTACCTTA-AAATCAAAGTTCATCCTTAAATAAGGCA
1 TGCAAGAAAAGCTTTTC-TTACCACCATTT--TTTATAAATCAAAGTTTGTCCTTAAATAAGACA
* * ** * * * * * *
43767 AGCATCAATTCTCAGTAATAGTCTCC-ATTCTTTTCAAGACTAGGAACCAAAAACACATTC-CCT
63 AACATGAATAGTCA-TACTAATC-CCTATTCTTTTCAAGATTAGGCACCATAAACACATTCTTC-
* * * * * **
43830 TCATAAAGATACACGACATTTATGCTTTGGTGA
125 TCATTAGGATACATGATATTGATGCTTTGGTTT
* * * * * *
43863 CGCAAAAAAAGCTTTTCTTATCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAAAAAGA-AA
1 TGCAAGAAAAGCTTTTCTTACCACCATTTTTTATA-AATCAAAGTTTGTC-CTTAAATAAGACAA
* * * * ** * *
43927 AAACTAGAATAGTCAAACTAATCCCTATTCTTTTCAGGATTAGGCAACATAAACGTAGTCTTCTT
64 ACA-T-GAATAGTCATACTAATCCCTATTCTTTTCAAGATTAGGCACCATAAACACATTCTTCTC
* * * *
43992 ATAAGGATAAACGATATTGATGCATTGGTTT
127 ATTAGGATACATGATATTGATGCTTTGGTTT
* * * * * ** * * **
44023 TGAAAGAAAGGC-TTTCTT-CCCCCTTATTTTTGA-AAAGTCTACCTTTGGGCCTCAAATGCGAC
1 TGCAAGAAAAGCTTTTCTTACCACC--ATTTTTTATAAA-TCAAAGTTT-GTCCTTAAATAAGAC
* * * * ** * * *
44085 TAACATTG-AT--TC-TAGTAATGATCTTCATTCATTTT-GTGATTAGGCACTACAAACCCATTC
62 AAACA-TGAATAGTCATACTAAT--CCCT-ATTC-TTTTCAAGATTAGGCACCATAAACACATTC
* * * **
44145 TCCTCATTAGGATAAATGATATTGATGATTTTCTTT
122 TTCTCATTAGGATACATGATATTGATGCTTTGGTTT
* * * * * **
44181 TGCATGAAAATCTTTTCTTTGCC-CAATTTACCTTA-AAATCAAAGTTCATCCCTTAAATAA-AC
1 TGCAAGAAAAGCTTTTC-TTACCACCATTT--TTTATAAATCAAAGTTTGT-CCTTAAATAAGAC
* * ** * * * * * *
44243 GTAAGCATCAATTCTCGTA-AAAGTCTCC-ATTCATTTCAAGATTGGGAACCAAAAACACATTCC
62 --AAACATGAATAGTCATACTAA-TC-CCTATTCTTTTCAAGATTAGGCACCATAAACACATT-C
* * * **
44306 ATT-T-ATGAGGATACATGACATTGATACTTT-GTGA
122 -TTCTCATTAGGATACATGATATTGATGCTTTGGTTT
* * * * **
44340 CGCAA-AAAAGGCTTTTCTTACCATCATTTTTGATAGAATCAAAGTTTGTCTGTTAAATAAGGGA
1 TGCAAGAAAA-GCTTTTCTTACCACCATTTTTTATA-AATCAAAGTTTGTC-CTTAAATAAGACA
* * * *
44404 AAC-TAGAATAGTCATACTAATCCTTATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTC
63 AACAT-GAATAGTCATACTAATCCCTATTCTTTTCAAGATTAGGCACCATAAACACATTCTTCTC
* * *
44468 ----GTATACACGATATTGATGGTTTGGTTT
127 ATTAGGATACATGATATTGATGCTTTGGTTT
* * * * * * * * * *
44495 TGAAATG-AAGGC-TTTCTTCCCCCCAATTTTGTA-AAGTCTAACTTCATG-CCTCAAATGAGAC
1 TGCAA-GAAAAGCTTTTCTTACCACC-ATTTTTTATAAATCAAAGTT--TGTCCTTAAATAAGAC
* * * * ** *
44556 AAACATGGAT--TC-TAGTAAGGGCCTTGATTCATTTT-GGGATTAGGCACTATAAACACATTCT
62 AAACATGAATAGTCATACTAA--TCCCT-ATTC-TTTTCAAGATTAGGCACCATAAACACATTCT
* * * * * **
44617 CCTCATTGGGATAAATGTTATTGATGATTTCCTTT
123 TCTCATTAGGATACATGATATTGATGCTTTGGTTT
* * * * * * * **
44652 TGCATGGAAATCTTTTATTTGCC-CTATTTACCTTA-AAATCAAAGTTCATCCCTTAAATAAGAC
1 TGCAAGAAAAGCTTTT-CTTACCACCATTT--TTTATAAATCAAAGTTTGT-CCTTAAATAAGAC
* * * * * * * * * * *
44715 AAGCATCGATTCG-CGTAATAGT-CTTCATTCTTTTTAAGATT-GGGAGCCAAAAACACATTC-C
62 AAACAT-GAATAGTCATACTAATCCCT-ATTCTTTTCAAGATTAGGCA-CCATAAACACATTCTT
* * **
44776 CTTCATTAGGATACATGACATTGATGCTATGGTGA
124 C-TCATTAGGATACATGATATTGATGCTTTGGTTT
* * * *
44811 CGGAAAAAAAGCTTTTCTTACCACCGTTTTTTATAGAATCAAAGTTTGTCTCTTAAATAAGACAA
1 TGCAAGAAAAGCTTTTCTTACCACCATTTTTTATA-AATCAAAGTTTGTC-CTTAAATAAGACAA
* * *
44876 ACATGAAAAGTCATACTAATCCCTATTCTTTTCAAGATTAGGCACCATAAACATAGTCTTCTCAT
64 ACATGAATAGTCATACTAATCCCTATTCTTTTCAAGATTAGGCACCATAAACACATTCTTCTCAT
*
44941 TAGGATACACGATATTGATGCTTTGGTTT
129 TAGGATACATGATATTGATGCTTTGGTTT
* * *
44970 CGCAAGAAAAG-TTTTTTTCCCACCA
1 TGCAAGAAAAGCTTTTCTTACCACCA
44995 ATATTTGCAA
Statistics
Matches: 2649, Mismatches: 904, Indels: 550
0.65 0.22 0.13
Matches are distributed among these distances:
150 5 0.00
151 2 0.00
152 4 0.00
153 52 0.02
154 39 0.01
155 113 0.04
156 45 0.02
157 182 0.07
158 648 0.24
159 1187 0.45
160 295 0.11
161 45 0.02
162 27 0.01
163 4 0.00
164 1 0.00
ACGTcount: A:0.33, C:0.19, G:0.14, T:0.35
Consensus pattern (157 bp):
TGCAAGAAAAGCTTTTCTTACCACCATTTTTTATAAATCAAAGTTTGTCCTTAAATAAGACAAAC
ATGAATAGTCATACTAATCCCTATTCTTTTCAAGATTAGGCACCATAAACACATTCTTCTCATTA
GGATACATGATATTGATGCTTTGGTTT
Found at i:50630 original size:12 final size:12
Alignment explanation
Indices: 50615--50649 Score: 54
Period size: 12 Copynumber: 2.9 Consensus size: 12
50605 TCTATTATCT
50615 CTCCTATCTCTC
1 CTCCTATCTCTC
50627 CTCCTATCATC-C
1 CTCCTATC-TCTC
50639 CTCCTATCTCT
1 CTCCTATCTCT
50650 ACTATCTCTC
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
11 2 0.10
12 17 0.81
13 2 0.10
ACGTcount: A:0.11, C:0.49, G:0.00, T:0.40
Consensus pattern (12 bp):
CTCCTATCTCTC
Found at i:50637 original size:42 final size:42
Alignment explanation
Indices: 50582--50700 Score: 175
Period size: 42 Copynumber: 2.8 Consensus size: 42
50572 TTCTTCTCTC
* *
50582 CTCCTCCTGTCATCCCTCCTCTCTCTATTATCTCTCCTATCT
1 CTCCTCCTATCATCCCTCCTCTCTCTACTATCTCTCCTATCT
* * *
50624 CTCCTCCTATCATCCCTCCTATCTCTACTATCTCTCTTGTCT
1 CTCCTCCTATCATCCCTCCTCTCTCTACTATCTCTCCTATCT
* *
50666 CTCCTCCTATCATCCCTCCTCTCTCTTCTTTCTCT
1 CTCCTCCTATCATCCCTCCTCTCTCTACTATCTCT
50701 TTGAGGGCTA
Statistics
Matches: 69, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
42 69 1.00
ACGTcount: A:0.09, C:0.45, G:0.02, T:0.44
Consensus pattern (42 bp):
CTCCTCCTATCATCCCTCCTCTCTCTACTATCTCTCCTATCT
Found at i:50642 original size:24 final size:24
Alignment explanation
Indices: 50606--50691 Score: 76
Period size: 24 Copynumber: 3.8 Consensus size: 24
50596 CCTCCTCTCT
* *
50606 CTATTATCTCTCCTATCTCTCCTC
1 CTATCATCCCTCCTATCTCTCCTC
*
50630 CTATCATCCCTCCTA--TCT-CTA
1 CTATCATCCCTCCTATCTCTCCTC
* *
50651 CTATC-T--CTCTTGTCTCTCCTC
1 CTATCATCCCTCCTATCTCTCCTC
*
50672 CTATCATCCCTCCTCTCTCT
1 CTATCATCCCTCCTATCTCT
50692 TCTTTCTCTT
Statistics
Matches: 48, Mismatches: 8, Indels: 12
0.71 0.12 0.18
Matches are distributed among these distances:
18 4 0.08
20 4 0.08
21 14 0.29
22 4 0.08
24 22 0.46
ACGTcount: A:0.12, C:0.44, G:0.01, T:0.43
Consensus pattern (24 bp):
CTATCATCCCTCCTATCTCTCCTC
Found at i:54472 original size:477 final size:475
Alignment explanation
Indices: 52308--55371 Score: 3797
Period size: 477 Copynumber: 6.5 Consensus size: 475
52298 GGTTTTCATC
* * * * *
52308 AACAATCTCCATTCTTTTTCAAGATTTGGAACCAAAAACATATTCCCTTCATTA-GAGACAAGAC
1 AACAGTCTCCATTC-TTTTCAAGATTAGGAACCAAAAACACATTCCCTTCATTAGGATACATGAC
* * * * *
52372 ATTGATGCTTTGGTGACGTAAAAAAAGCATTTCTTACCACTGCTTTTT-ATAGAATCAAAATTTG
65 ATTGATGCTTTGGTGATGCAAAAAAAGCTTTTCTTACCACCG-TTTTTGATAGAATCAAAGTTT-
*
52436 A-CTCTTAAATAAGACAAACATGAAAAG---T-C--ATCCCTGTTCTTTTCATGATTAGGCACCA
128 ATCTCTTAAATAAGACAAACATGAAGAGTCATACTAATCCCTGTTCTTTTCATGATTAGGCACCA
* * *
52494 TAAACATAGTCTTATCATAAGGATACATGATATTGATGCTCTGGTTTCGCAAGAAAAGCATTTTC
193 TAAACATAGTCTTCTCATAAGGATACACGATATTGATGCTTTGGTTTCGCAAGAAAAGCATTTTC
* * * * *
52559 CCACCAATTTTTTTAAAGTCTGAC--CGTGCCTCAATTGAGGCAAACATGGATTTTTGTAATGCC
258 CCACCAATTTTTATAAAGTCTGACTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGCC
*
52622 CTTCATTCATTTTGTGGA-TAGGCATTATAAACACATTCTTCACATTAGGATAAAGGATAATGAT
323 CTTCATTCATTTTGT-GATTAGGCACTATAAACACATTCTTCACATTAGGATAAAGGATAATGAT
* * * *
52686 GATTTTCTTTTGTATGGAAATCTTTTCTTTGCCGTATTTACCTTATAATCAAAGTTCAACCCTTA
387 GATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTACCTTAAAATCAAAGTTCATCCCTTA
*
52751 AATAAGGCAAGCATCAATTCTCGT
452 AATAAGGCAAGCATCGATTCTCGT
* * * *
52775 AACAATCTCCATTCTTTTCAAGATTAGGAACCAAAAACATATTCCCTTCATTA-GAGACAAGACA
1 AACAGTCTCCATTCTTTTCAAGATTAGGAACCAAAAACACATTCCCTTCATTAGGATACATGACA
* * ** *
52839 TTGATGCTTTGGTGATGCAAAAAAAAAAAACATTTCTTACCATTGTCTTT-ATAGAATCAAAGTT
66 TTGATGCTTTGGTGATGC----AAAAAAAGCTTTTCTTACCACCGTTTTTGATAGAATCAAAGTT
*
52903 TGA-CTCTTAAATAAGACAAACATGAAGAG---T-C--ATCCCTATTCTTTTCATGATTAGGCAC
127 T-ATCTCTTAAATAAGACAAACATGAAGAGTCATACTAATCCCTGTTCTTTTCATGATTAGGCAC
* * * *
52961 CATAAGCATTGTCTTCTCATAAGGATACATGATATTGATGCTCTGGTTTCGCAAGAAAAGCATTT
191 CATAAACATAGTCTTCTCATAAGGATACACGATATTGATGCTTTGGTTTCGCAAGAAAAGCATTT
* * * * *
53026 TCCCACCAATTTTTTTAAAGTCTGGC--CGTGCCTCAATTGAGGCAAACATGGATTCTTGTAATG
256 TCCCACCAATTTTTATAAAGTCTGACTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATG
53089 CCCTTCATTCATTTTGTGGA-TAGGCACTATAAACACATTCTTCACATTAGGATAAAGGATAATG
321 CCCTTCATTCATTTTGT-GATTAGGCACTATAAACACATTCTTCACATTAGGATAAAGGATAATG
* * * *
53153 ATGATTTTCTTTTGTATGGAAATCTTTTCTTTGCCTTATTTACCTTATAATCAAAGTTCAACCCT
385 ATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTACCTTAAAATCAAAGTTCATCCCT
*
53218 TAAATAAGGCAAGCATTGATTCTCGT
450 TAAATAAGGCAAGCATCGATTCTCGT
* * * *
53244 AACAATCTCCATTC-TTTCAAGATTAGGAACCAAAAACATATTCCCTTCATTA-GAGACAAGACA
1 AACAGTCTCCATTCTTTTCAAGATTAGGAACCAAAAACACATTCCCTTCATTAGGATACATGACA
* ** *
53307 TTGATGCTTTGGTGACGCAAAAAAA-CTTTTCTTACCATTGTCTTT-ATAGAATCAAAGTTTGA-
66 TTGATGCTTTGGTGATGCAAAAAAAGCTTTTCTTACCACCGTTTTTGATAGAATCAAAGTTT-AT
*
53369 CTCTTAAATAAGACAAACATGAAGAG---T-C--ATCCCTATTCTTTTCATGATTAGGCACCATA
130 CTCTTAAATAAGACAAACATGAAGAGTCATACTAATCCCTGTTCTTTTCATGATTAGGCACCATA
* *
53428 AACATTGTCTTCTCATAAGGATACATGATATTGATGCTTTGGTTTCGCAAGAAAAGCATTTTCCC
195 AACATAGTCTTCTCATAAGGATACACGATATTGATGCTTTGGTTTCGCAAGAAAAGCATTTTCCC
* * * * *
53493 ACCAATTTTTGTAAAGTCTGACTACGTGCCTCAATTGAGGCAAACATGGATTCTTGTAATGCCCT
260 ACCAATTTTTATAAAGTCTGACTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGCCCT
*
53558 TCATTCATTTTGTGGTTAGGCACTATAAACACATTCTTCACATTAGGATAAAGGATAATGATGAT
325 TCATTCATTTTGTGATTAGGCACTATAAACACATTCTTCACATTAGGATAAAGGATAATGATGAT
* *
53623 TTTCTTTTGCATGGAAATC-TTTCATTTGCCTTATTTACCATAAAATCAAAGTTCATCCCTTAAA
390 TTTCTTTTGCATGGAAATCTTTTC-TTTGCCCTATTTACCTTAAAATCAAAGTTCATCCCTTAAA
53687 TAAGGCAAGCATCGATTCTCGT
454 TAAGGCAAGCATCGATTCTCGT
* *
53709 AACAGTCTCCATTCTTTTCAAGATTGGGAACTAAAAACACATTCCCTTTC-TTAGGATACATGAC
1 AACAGTCTCCATTCTTTTCAAGATTAGGAACCAAAAACACATTCCC-TTCATTAGGATACATGAC
* * *
53773 ATTGATGCTATGGTGACGCAAAAAAAGCTTTTCTTACCACCGTTTTTGATAGAATCAAAGTTTGT
65 ATTGATGCTTTGGTGATGCAAAAAAAGCTTTTCTTACCACCGTTTTTGATAGAATCAAAGTTTAT
* * * * * * *
53838 CTCGTAAATTAGACAAACATGAAGAGTCAAACTAATCCTTATTTTTTTCAAGATTAGGCACCATA
130 CTCTTAAATAAGACAAACATGAAGAGTCATACTAATCCCTGTTCTTTTCATGATTAGGCACCATA
* * * *
53903 AACATAGTCTTCTCATAAGGATACACGATATTTATGCTTTGGTTTTGCACGAAAAGCTTTTTTCC
195 AACATAGTCTTCTCATAAGGATACACGATATTGATGCTTTGGTTTCGCAAGAAAAGC-ATTTTCC
* * * * *
53968 CACCAATTTTTATAAAGTCTAACTTTGTGCCTCAAATAAGACAAACATGGATTCTAGTAAAGGCC
259 CACCAATTTTTATAAAGTCTGACTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGCCC
* * * * * * *
54033 TTCATTCATTTGGTGATTAAGCACTATAAACAAATTCTTCTCATTAGGATAAATGTTATTGATGA
324 TTCATTCATTTTGTGATTAGGCACTATAAACACATTCTTCACATTAGGATAAAGGATAATGATGA
* * *
54098 TTTTCTTTTGCATGGAAATCGTTTCTTTGCCCTATTTAACTTATAATCAAAGTTCATCCCTTAAA
389 TTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTACCTTAAAATCAAAGTTCATCCCTTAAA
*
54163 TAAGGTAAGCATCGATTCTCGT
454 TAAGGCAAGCATCGATTCTCGT
* * * *
54185 AACAGTTTCTATTCTTTTCAGGATTAGGAACCAAAAAACACATTCCCTTCATGAGGATACATGAC
1 AACAGTCTCCATTCTTTTCAAGATTAGGAACC-AAAAACACATTCCCTTCATTAGGATACATGAC
* * * *
54250 ATTGATACTTTGGTGATACAAAAAGAGCTTTTCTTGCCACCGTTTTTGATAGAATCAAAGTTTAT
65 ATTGATGCTTTGGTGATGCAAAAAAAGCTTTTCTTACCACCGTTTTTGATAGAATCAAAGTTTAT
* * * * *
54315 CTCTTAAATAAGAGAAAC-TAGAATAGTCATACTAATCCCTGTTCTTTTCCTGATTAGGCACTAG
130 CTCTTAAATAAGACAAACAT-GAAGAGTCATACTAATCCCTGTTCTTTTCATGATTAGGCACCAT
* * * * * *
54379 AAACGTAGTCTTCTCATAAGGATACACGACATTTATGCTTTGGTTTCGAAAGAAATGCTTTTTTC
194 AAACATAGTCTTCTCATAAGGATACACGATATTGATGCTTTGGTTTCGCAAGAAAAGC-ATTTTC
* * * * * *
54444 TCC-CCAATTTTTATAAGGTCTGACTTTGTGCCTCAAATGCGACAAATATTGATTCTAGTAATGT
258 -CCACCAATTTTTATAAAGTCTGACTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGC
* * * * * * * * * * *
54508 TCTTCACTCATTTTGTGATTAGGCATTATTAACACATTGTCCACATTAGTACAAATGTTATTGAT
322 CCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTTCACATTAGGATAAAGGATAATGAT
* * *
54573 GATTTTCTTTTGCGTTGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATC-AATTTCATCCCTT
387 GATTTTCTTTTGC-ATGGAAATCTTTTCTTTGCCCTATTTACCTTAAAATCAAAGTTCATCCCTT
*
54637 AATTAATGGCAAGCATCGATTCTCGT
451 AAATAA-GGCAAGCATCGATTCTCGT
* * * * * *
54663 AATAGTGTCCATTCTTTTTAAGATTGGGAACCAAAAACACATTCCCTTCACTAGGATATATGACA
1 AACAGTCTCCATTCTTTTCAAGATTAGGAACCAAAAACACATTCCCTTCATTAGGATACATGACA
* * * *
54728 TCGATGATTTGGTGATGCAAAAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGTC
66 TTGATGCTTTGGTGATGCAAAAAAAGCTTTTCTTACCACCGTTTTTGATAGAATCAAAGTTTATC
* * * * * *
54793 TATTAAATAAGAGAAAC-TAGAATAGTCAAACTAATCCCTGTTCTTTTCAAGATTAGGCACCACA
131 TCTTAAATAAGACAAACAT-GAAGAGTCATACTAATCCCTGTTCTTTTCATGATTAGGCACCATA
* * * * * * * *
54857 AGCGTAGTCTTCTCATAAGGATACACGACATTTATGCTTTGGTTTTGAAAGAAAGGCTTTTTTCC
195 AACATAGTCTTCTCATAAGGATACACGATATTGATGCTTTGGTTTCGCAAGAAAAGC-ATTTTCC
* * * **
54922 TC-CCAATTTTTATAATGTATGACTTCGTGCCTCAAATGAGACAAACATTGATTCTAGTAATGAT
259 -CACCAATTTTTATAAAGTCTGACTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGCC
* * * * * * *
54986 CTTCATTCATTTTGTGATTAGGCATTATTAACACATTCTTCTCATTAGTATAAATGTTATTGATG
323 CTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTTCACATTAGGATAAAGGATAATGATG
* *
55051 ATTTTCTTTTGCGTTGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATC--AGTTTCATCCCTT
388 ATTTTCTTTTGC-ATGGAAATCTTTTCTTTGCCCTATTTACCTTAAAATCAAAG-TTCATCCCTT
*
55114 AATTAATGGCAAGCATCGATTCTCGT
451 AAATAA-GGCAAGCATCGATTCTCGT
* * * * * *
55140 AATAGTGTCCATTCTTTTTAAGATTGGGAACCAAAAACACATTCCCTTCACTAGGATATATGACA
1 AACAGTCTCCATTCTTTTCAAGATTAGGAACCAAAAACACATTCCCTTCATTAGGATACATGACA
* * * *
55205 TCGATGATTTGGTGATGCAAAAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGTC
66 TTGATGCTTTGGTGATGCAAAAAAAGCTTTTCTTACCACCGTTTTTGATAGAATCAAAGTTTATC
* * * * * *
55270 TATTAAATAAGAGAAAC-TAGAATAGTCAAACTAATCCCTGTTCTTTTCAAGATTAGGCACCACA
131 TCTTAAATAAGACAAACAT-GAAGAGTCATACTAATCCCTGTTCTTTTCATGATTAGGCACCATA
* *
55334 AGCGTAGTCTTCTCATAAGGATACACGATATTGATGCT
195 AACATAGTCTTCTCATAAGGATACACGATATTGATGCT
55372 ATGTGTTAGG
Statistics
Matches: 2393, Mismatches: 174, Indels: 50
0.91 0.07 0.02
Matches are distributed among these distances:
463 178 0.07
464 12 0.01
465 192 0.08
466 96 0.04
467 50 0.02
468 83 0.03
469 400 0.17
470 21 0.01
473 1 0.00
475 80 0.03
476 228 0.10
477 974 0.41
478 78 0.03
ACGTcount: A:0.32, C:0.19, G:0.14, T:0.35
Consensus pattern (475 bp):
AACAGTCTCCATTCTTTTCAAGATTAGGAACCAAAAACACATTCCCTTCATTAGGATACATGACA
TTGATGCTTTGGTGATGCAAAAAAAGCTTTTCTTACCACCGTTTTTGATAGAATCAAAGTTTATC
TCTTAAATAAGACAAACATGAAGAGTCATACTAATCCCTGTTCTTTTCATGATTAGGCACCATAA
ACATAGTCTTCTCATAAGGATACACGATATTGATGCTTTGGTTTCGCAAGAAAAGCATTTTCCCA
CCAATTTTTATAAAGTCTGACTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGCCCTT
CATTCATTTTGTGATTAGGCACTATAAACACATTCTTCACATTAGGATAAAGGATAATGATGATT
TTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTACCTTAAAATCAAAGTTCATCCCTTAAATA
AGGCAAGCATCGATTCTCGT
Found at i:57570 original size:477 final size:478
Alignment explanation
Indices: 56568--58463 Score: 2546
Period size: 477 Copynumber: 4.0 Consensus size: 478
56558 GGTTTCACTA
* * * **
56568 TGGTTTTGAAAGAAATGCTTTCTTCCCCCCAATTTTTGCAAAGTCTGACTTCGTGCCTCAAATGA
1 TGGTTTCGAAAGAAAGGCTTTTTTCCCCCCAATTTTTATAAAGTCTGACTTCGTGCCTCAAATGA
* * * *
56633 GATAAACATTGATTCTATTAATGATCTTCCA-TAATTTTGTGATTAGGCACTACAAACACATTCT
66 GACAAACATTGATTCTAGTAATGATCTT-CATTCATTTTGTGATTAGGCACTATAAACACATTCT
* *
56697 CCTTATTAGGATAAATG-T-TTGATGATTTTCTTTTG-TATGGAAATCTTTTCTTTGCCC----T
130 CCTCATTAGGATAAATGTTATTGATGATTTTCTTTTGCGATGGAAATCTTTTCTTTGCCCTATTT
** *
56755 ACCTTAAAATCAAAGCTT-AT-CC-----TAA-GGCAAGCATCGATTCTCAAAATAGTCTCCATT
195 ACCTTAAAATC-AAGCTTCATCCCTTAATTAATGGCAAGCATCGATTCTCGTAATAGTGTCCATT
* * * * * * *
56812 CCTTTCAAGATTGGGAACCAAAAACAAATTCCCTTCATTAGGATATACGACATTGATGCTATGGT
259 CTTTTCAAGATTGGGAACCAAAAACACATTCCCTTCACTAGGATATATGACATCGATGATTTGGT
* * * * * ** *
56877 GACGCAAAAAAAGCTTTTCTTTCCACTGATTTTGATAGAATAAAAGTTTGCCTCCTAAATAAGAC
324 GATGCAAAAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGTCTATTAAATAAGAG
* * * * * ** * *
56942 AAA-TATGAAGAGTCATACTAATCCCTATTTTTTTTTTAAGATTAGGTGCCATAAACATAGTCTT
389 AAACTA-GAATAGTCAAACTAATCCC--TGTTCTTTTCAAGATTAGGCACCACAAACGTAGTCTT
*
57006 CTCATAAGGATACACGATATTGATGCTT
451 CTCATAAGGATACACGACATTGATGCTT
* * * * *
57034 TGG-TTCTGCAAGAAAGGCTTTTTTCCCACCAATTTTTATAAAGTCTAACTTTGTGCCTCAAATA
1 TGGTTTC-GAAAGAAAGGCTTTTTTCCCCCCAATTTTTATAAAGTCTGACTTCGTGCCTCAAATG
* * ** * * *
57098 AGACAAACATGGATTCTAGTAAAGGCCTTCATTCATTTGGTGATTAAGCACTATAAACAAATTCT
65 AGACAAACATTGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCT
* *
57163 TCTCATTAGGATAAATGTTATTGATGATTTTCTTTTGC-ATGGAAATCGTTTCTTTGCCCTATTT
130 CCTCATTAGGATAAATGTTATTGATGATTTTCTTTTGCGATGGAAATCTTTTCTTTGCCCTATTT
* * * * * * *
57227 AACTTATAATCAAAG-TTCATCCCTTAAATAA-GGTAAGCATCGATTCTCGTAACAGTTTCTATT
195 ACCTTAAAATC-AAGCTTCATCCCTTAATTAATGGCAAGCATCGATTCTCGTAATAGTGTCCATT
* * * * *
57290 CTTTTCAGGATTAGGAACCAAAAAACACATTCCCTCCA-TGAGGATACATGACATTGAT-ACTTT
259 CTTTTCAAGATTGGGAACC-AAAAACACATTCCCTTCACT-AGGATATATGACATCGATGA-TTT
* * * * *
57353 GGTGATACAAAAAGAGCTTTTCTTGCCACCGTTTTTGATAGAATCAAAGTTTATCTCTTAAATAA
321 GGTGATGCAAAAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGTCTATTAAATAA
* ** * *
57418 GAGAAACTAGAATAGTCATACTAATCCCTGTTCTTTTCCTGATTAGGCACTAGAAACGTAGTCTT
386 GAGAAACTAGAATAGTCAAACTAATCCCTGTTCTTTTCAAGATTAGGCACCACAAACGTAGTCTT
*
57483 CTCATAAGGATACACGACATTTATGCTT
451 CTCATAAGGATACACGACATTGATGCTT
* * * * *
57511 TGGTTTCGAAAGAAATGCTTTTTTCTCCCCAATTTTTATAAGGTCTGACTTTGTGCCTCAAATGC
1 TGGTTTCGAAAGAAAGGCTTTTTTCCCCCCAATTTTTATAAAGTCTGACTTCGTGCCTCAAATGA
* * * * * *
57576 GACAAATATTGATTCTAGTAATGTTCTTCACTCATTTTGTGATTAGGCATTATTAACACATTGTC
66 GACAAACATTGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTC
* * * * *
57641 CACATTAGTACAAATGTTATTGATGATTTTCTTTTGCGTTGGAAATCTTTTCTTTGCCCTATTTT
131 CTCATTAGGATAAATGTTATTGATGATTTTCTTTTGCGATGGAAATCTTTTCTTTGCCCTATTTA
*
57706 CCTTAAAATCAA-TTTCATCCCTTAATTAATGGCAAGCATCGATTCTCGTAATAGTGTCCATTCT
196 CCTTAAAATCAAGCTTCATCCCTTAATTAATGGCAAGCATCGATTCTCGTAATAGTGTCCATTCT
*
57770 TTTTAAGATTGGGAACCAAAAACACATTCCCTTCACTAGGATATATGACATCGATGATTTGGTGA
261 TTTCAAGATTGGGAACCAAAAACACATTCCCTTCACTAGGATATATGACATCGATGATTTGGTGA
57835 TGCAAAAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGTCTATTAAATAAGAGAA
326 TGCAAAAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGTCTATTAAATAAGAGAA
*
57900 ACTAGAATAGTCAAACTAATCCCTGTTCTTTTCAAGATTAGGCACCACAAGCGTAGTCTTCTCAT
391 ACTAGAATAGTCAAACTAATCCCTGTTCTTTTCAAGATTAGGCACCACAAACGTAGTCTTCTCAT
*
57965 AAGGATACACGACATTTATGCTT
456 AAGGATACACGACATTGATGCTT
* * *
57988 TGGTTTTGAAAGAAAGGCTTTTTTCCCCCCAATTTTTATAATGTATGACTTCGTGCCTCAAATGA
1 TGGTTTCGAAAGAAAGGCTTTTTTCCCCCCAATTTTTATAAAGTCTGACTTCGTGCCTCAAATGA
* * *
58053 GACAAACATTGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCATTATTAACACATTCTT
66 GACAAACATTGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTC
* * *
58118 CTCATTAGTATAAATGTTATTGATGATTTTCTTTTGCGTTGGAAATCTTTTCTTTGCCCTATTTT
131 CTCATTAGGATAAATGTTATTGATGATTTTCTTTTGCGATGGAAATCTTTTCTTTGCCCTATTTA
*
58183 CCTTAAAATC-AGTTTCATCCCTTAATTAATGGCAAGCATCGATTCTCGTAATAGTGTCCATTCT
196 CCTTAAAATCAAGCTTCATCCCTTAATTAATGGCAAGCATCGATTCTCGTAATAGTGTCCATTCT
*
58247 TTTTAAGATTGGGAACCAAAAACACATTCCCTTCACTAGGATATATGACATCGATGATTTGGTGA
261 TTTCAAGATTGGGAACCAAAAACACATTCCCTTCACTAGGATATATGACATCGATGATTTGGTGA
58312 TGCAAAAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGTCTATTAAATAAGAGAA
326 TGCAAAAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGTCTATTAAATAAGAGAA
*
58377 ACTAGAATAGTCAAACTAATCCCTGTTCTTTTCAAGATTAGGCACCACAAGCGTAGTCTTCTCAT
391 ACTAGAATAGTCAAACTAATCCCTGTTCTTTTCAAGATTAGGCACCACAAACGTAGTCTTCTCAT
*
58442 AAGGATACACGATATTGATGCT
456 AAGGATACACGACATTGATGCT
58464 ATGTGTTAGG
Statistics
Matches: 1271, Mismatches: 132, Indels: 43
0.88 0.09 0.03
Matches are distributed among these distances:
465 4 0.00
466 117 0.09
467 1 0.00
468 37 0.03
471 2 0.00
472 16 0.01
473 2 0.00
476 1 0.00
477 850 0.67
478 127 0.10
479 112 0.09
480 2 0.00
ACGTcount: A:0.31, C:0.18, G:0.15, T:0.36
Consensus pattern (478 bp):
TGGTTTCGAAAGAAAGGCTTTTTTCCCCCCAATTTTTATAAAGTCTGACTTCGTGCCTCAAATGA
GACAAACATTGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTC
CTCATTAGGATAAATGTTATTGATGATTTTCTTTTGCGATGGAAATCTTTTCTTTGCCCTATTTA
CCTTAAAATCAAGCTTCATCCCTTAATTAATGGCAAGCATCGATTCTCGTAATAGTGTCCATTCT
TTTCAAGATTGGGAACCAAAAACACATTCCCTTCACTAGGATATATGACATCGATGATTTGGTGA
TGCAAAAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGTCTATTAAATAAGAGAA
ACTAGAATAGTCAAACTAATCCCTGTTCTTTTCAAGATTAGGCACCACAAACGTAGTCTTCTCAT
AAGGATACACGACATTGATGCTT
Found at i:61124 original size:20 final size:20
Alignment explanation
Indices: 61087--61125 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
61077 GATGCTTTGG
*
61087 TTTTGAAAGAGATACTTTCA
1 TTTTGAAAGAAATACTTTCA
*
61107 TTTTGAAAGAAATGCTTTC
1 TTTTGAAAGAAATACTTTC
61126 TTCCCCCCAA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.33, C:0.10, G:0.15, T:0.41
Consensus pattern (20 bp):
TTTTGAAAGAAATACTTTCA
Found at i:62036 original size:477 final size:474
Alignment explanation
Indices: 59660--64906 Score: 5966
Period size: 458 Copynumber: 11.1 Consensus size: 474
59650 GGTTTCACTA
* * * *
59660 TGGTTTTGAAAGAAATGCTTTCTTCCCCCCAATTTTTGCAAAGTCTGACTTCGTGCCTCAAATGA
1 TGGTTTTGAAAGAAAGGCTTTCTTCCCACCAATTTTTGTAAAGTCTAACTTCGTGCCTCAAATGA
* * * * *
59725 GATAAACATTGATTCTATTAATGATCTTCCA-TAATTTTGTGATTAGGCACTACAAACACATTCT
66 GACAAACA-TGATTCTAGTAATGACCTT-CATTCATTTTGTGATTAGGCACTATAAACACATTCT
* * * *
59789 CCTTATTAGGATAAAT-GT-TTGATGATTTTCTTTTGTATGGAAATCTTTTCTTTGCC----CTA
129 CCTCATTAGGATAAATATTATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCTTATTTA
** * *
59848 CCTTAAAATCAAAGCTT-AT-CC-----TAAGGCAAGCATCGATTCTCAAAATAGTCTCCATTCC
194 CCTTAAAATCAAAG-TTCATCCCTTAAATAAGGCAAGCATCGATTCTCGTAACAGTCTCCATTCT
* * * * *
59906 TTTCAAGATTGGGAACCAAAAACAAATTCCCTTCATTAGGATATACGGCATTGATGCTATGGTGA
258 TTTCAAGATTGGGAACCAAAAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGA
* * * * * * *
59971 CGCAAAAAAAGCTTTTCTTTCCACTGATTTTGATAGAATAAAAGTTTGCCTCCTAAATAAGACAA
323 CGC-AAAAAAGCTTTTCTTACCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGAGAA
* * * ** *
60036 A-TATGAAGAGTCATACTAATCCCTATTTTTTTTTTAAGATTAGGTGCCATAAACATAGTCTTCT
387 ACTA-GAAGAGTCATACTAATCCCTA--TTCTTTTCAGGATTAGGCACCATAAACGTAGTCTTCT
60100 CATAAGGATACACGATATTGATGCTT
449 CATAAGGATACACGATATTGATGCTT
* * * *
60126 TGGTTCTGCAAGAAAGGCTTTTTTCCCACCAATTTTTGTAAAGTCTAACTTCGTGCCTCAAAAGA
1 TGGTTTTGAAAGAAAGGCTTTCTTCCCACCAATTTTTGTAAAGTCTAACTTCGTGCCTCAAATGA
* * *
60191 GACAAACATGGATTCTAGTAAGGGCCTTCATTCATTTTGTGATTAGGCACTATAAACACTTTCTC
66 GACAAACAT-GATTCTAGTAATGACCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTC
* * *
60256 CTCATTAGGATAAATGTTATTGATGATTTTCTTTTGCATTGGGAATCTTTTCTTTGCCCTATTCT
130 CTCATTAGGATAAATATTATTGATGATTTTCTTTTGCA-TGGAAATCTTTTCTTTGCCTTATT-T
* * * ** * *
60321 -TCTTAAAATC-AATTTCATCCCTTAATTAAGGCAAGCATCGATTCTCAAAATAGTCTCCATTGT
193 ACCTTAAAATCAAAGTTCATCCCTTAAATAAGGCAAGCATCGATTCTCGTAACAGTCTCCATTCT
* * ** * * *
60384 TTTGAAGATTAGGAACCAAAAACACAATT-GTTTCATTTGGATACAAGACATTAATGCTTTGGTG
258 TTTCAAGATTGGGAACCAAAAACAC-ATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTG
* * *
60448 ACGCCAAAAAAGCTTTTCTTACCACCGTTTTTGATAGAATTAAAGTTTGTCTCTTGAATAAGACA
322 ACG-CAAAAAAGCTTTTCTTACCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGAGA
* * * *
60513 AAC-ATGAAGAGTCAAACTAATCCCTATTCTTTTCAAGTTTAGGCACCATAAACATAGTCTTCTC
386 AACTA-GAAGAGTCATACTAATCCCTATTCTTTTCAGGATTAGGCACCATAAACGTAGTCTTCTC
*
60577 ATAAGGATACATGATATTGATGCTT
450 ATAAGGATACACGATATTGATGCTT
* * * * * *
60602 TGGTTTCGCAAAAAAAAAAAAAGCTTTCTTCTCACCAATTTTTGTAAAGTCTGACTTCATGCCTC
1 TGGTTTTG------AAAGAAAGGCTTTCTTCCCACCAATTTTTGTAAAGTCTAACTTCGTGCCTC
* * * *
60667 AAATGAGACAAACATTGACTCTAGTAATAATCTTCATTCATTTTGTGATTAGGCACTATAAACAT
60 AAATGAGACAAACA-TGATTCTAGTAATGACCTTCATTCATTTTGTGATTAGGCACTATAAACAC
* * * *
60732 ATTCTCCTCGTTAGGATAAATGTTATTGATGATTTTTTTTTGCATGGAAATCTTTTCGTTGCGC-
124 ATTCTCCTCATTAGGATAAATATTATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGC-CT
* * * *
60796 TATTTACCTTAAAATCAAAGTTCATCCCTTAAAAAAGGCAAGAATTGATTCTCGTAATAGTCTCC
188 TATTTACCTTAAAATCAAAGTTCATCCCTTAAATAAGGCAAGCATCGATTCTCGTAACAGTCTCC
* * *
60861 ATTCTTTCCAAGATTGGGAACCAAAAACACATTCCTTTCATTAGCATACATGACATTGATGCTTT
253 ATTCTTTTCAAGATTGGGAACCAAAAACACATTCCCTTCATTAGGATACATGACATTGATGCTTT
* * * * * *
60926 GGTTATGCAAAAAAAGCTTTTCTTTCCACCGATTTTGATAGAGTCAAAGTTTGTCTAC-CAAATA
318 GGTGACGC-AAAAAAGCTTTTCTTACCACCGTTTTTGATAGAATCAAAGTTTGTCT-CTTAAATA
* * * * *
60990 AGAGAAACTAGAATAGTCAAACTAATCCCTGTT-TCTCTCAGGATTAGGCACCATAAGCGTAGTC
381 AGAGAAACTAGAAGAGTCATACTAATCCCTATTCT-TTTCAGGATTAGGCACCATAAACGTAGTC
*
61054 TTCTCATAAAGATACACGATATTGATGCTT
445 TTCTCATAAGGATACACGATATTGATGCTT
*
61084 TGGTTTTGAAAGAGATACTTTCATTTTGAAAGAAATGCTTTCTTCCCCCCAATTTTTG-AAAGTC
1 TGGTTTT------GA-A-----A----GAAAG----GCTTTCTTCCCACCAATTTTTGTAAAGTC
* * * * *
61148 TGACTTCATGCCTCAAATGAGACAAAGATTGATTCTAGTAATGATCTTCATTCATTTTGTGACTA
46 TAACTTCGTGCCTCAAATGAGACAAACA-TGATTCTAGTAATGACCTTCATTCATTTTGTGATTA
* * ** * * * *
61213 GGCACCATAAACCCATTCTAGTCATTAGGATAATTGTTGTTGATGATTTCCTTTTGCATGGAAAT
110 GGCACTATAAACACATTCTCCTCATTAGGATAAATATTATTGATGATTTTCTTTTGCATGGAAAT
* * *
61278 CTTTTCTTTGCCCTATTTACCTTAAAATCAAAGTTCATCCCTTAAA-AAGGGCAGGCATTGATTC
175 CTTTTCTTTGCCTTATTTACCTTAAAATCAAAGTTCATCCCTTAAATAA-GGCAAGCATCGATTC
* * * * *
61342 TCGTAACAGTCTCTATTCTTTTCACA-ATTGGGAACCAAAAACACGTTTCTTTCATTAGCATACA
239 TCGTAACAGTCTCCATTCTTTTCA-AGATTGGGAACCAAAAACACATTCCCTTCATTAGGATACA
* * * *
61406 TGACATTGATGCCTTGGTGACGCAAAAAAGGCTTTTCTTTCTACCATTTTTGATAGAATCAAAGT
303 TGACATTGATGCTTTGGTGACGCAAAAAA-GCTTTTCTTACCACCGTTTTTGATAGAATCAAAGT
* * * *
61471 TTATCCCTTAAATAAGAGAAACTAGAATAGTCAAACTAATCCCTATTCCTTTT-AGGATTAGGCA
367 TTGTCTCTTAAATAAGAGAAACTAGAAGAGTCATACTAATCCCTATT-CTTTTCAGGATTAGGCA
* *
61535 CCATAAATGTAGTCTTCGCATAAGGATACACGATATTGATGCTT
431 CCATAAACGTAGTCTTCTCATAAGGATACACGATATTGATGCTT
* * * * * *
61579 TGTTTTTGAAAGAAATGCTTTCTTCCCCCCCAACTTTTGTAAAGTCTAACTTTGCGCCTCAAATG
1 TGGTTTTGAAAGAAAGGCTTTCTT-CCCACCAATTTTTGTAAAGTCTAACTTCGTGCCTCAAATG
** * * *
61644 AGTGAAACACTGACTCTAGTAATAATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCT
65 AGACAAACA-TGATTCTAGTAATGACCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCT
* *
61709 CCTCATTAGGATAAATATTGTTGATGATTTTCATTTGCATGGAAATCTTTTCTTTGCGC-TATTT
129 CCTCATTAGGATAAATATTATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGC-CTTATTT
* * * *
61773 ACCTTAAAATCAAAGTTCATCCCTTAAAAAAGGCAAGCATTGACTCTCGTAACAGTCTCCATTTT
193 ACCTTAAAATCAAAGTTCATCCCTTAAATAAGGCAAGCATCGATTCTCGTAACAGTCTCCATTCT
* * *
61838 TTTCAAGATTGGGAACCAAAAACACATTCCTTTCATTAGCATACAAGACATTGATGCTTTGGTGA
258 TTTCAAGATTGGGAACCAAAAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGA
* * **
61903 TGCAGAAAAAACTTTTCTTTGCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGAGAA
323 CGCA-AAAAAGCTTTTCTTACCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGAGAA
* * * * * *
61968 ACGAGAATAGTCAAACTAATCCCTAGTCTTTTTAGGATTAGGCACCATAAACGTAGTCTTTTCAT
387 ACTAGAAGAGTCATACTAATCCCTATTCTTTTCAGGATTAGGCACCATAAACGTAGTCTTCTCAT
** * *
62033 AAGGACGCACGATATTGAAGTTT
452 AAGGATACACGATATTGATGCTT
* * *
62056 TGGTTTTGCAAGAAAGGCTTTTTTCCC-CCTAATTTTTGTAAAGTCTGACTTCGTGCCTCAAATG
1 TGGTTTTGAAAGAAAGGCTTTCTTCCCACC-AATTTTTGTAAAGTCTAACTTCGTGCCTCAAATG
* * *
62120 AGACAAACATTGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGCCACCATAAAC-CATTCT
65 AGACAAACA-TGATTCTAGTAATGACCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCT
* * ** * * *
62184 CCTTATTAGGATAATTGCTCTTGATGATTTTCGTTTACATGGAAATCTTTTCTTTGCCTTATTTA
129 CCTCATTAGGATAAATATTATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCTTATTTA
* * *
62249 TCTT-AAATCAAAGTTCATCCCATAAATAAGGCAAGCATCGATTCTAGTAACAGTCTCCATTCTT
194 CCTTAAAATCAAAGTTCATCCCTTAAATAAGGCAAGCATCGATTCTCGTAACAGTCTCCATTCTT
* * * * *
62313 TTTAAGATTGGGAACCAAAAACACATTCCCTTCAATAGGATACACGACATTGATGCTATGGTGAT
259 TTCAAGATTGGGAACCAAAAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGAC
* * *
62378 GC-AAAAA---------A--A--G-CTTTGATAGAATGAAAGTTTGTCTCTTAAATAAGACAAAC
324 GCAAAAAAGCTTTTCTTACCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGAGAAAC
* * *
62428 -ATGAAGAGTCATACTAATCCCTATTCTTTTCAAGATTAGGCACCATAAACATGGTCTTCTCATA
389 TA-GAAGAGTCATACTAATCCCTATTCTTTTCAGGATTAGGCACCATAAACGTAGTCTTCTCATA
*
62492 AGGATACACGATATTGATACTT
453 AGGATACACGATATTGATGCTT
* * * *
62514 TAG-TTTCACAAGAAAAGCTTTTTTCCCACCAATTTTTGTAAAGTCTAACTTCGTGCCTCAAATG
1 TGGTTTTGA-AAGAAAGGCTTTCTTCCCACCAATTTTTGTAAAGTCTAACTTCGTGCCTCAAATG
* * * * *
62578 AGACAAACATGGATTCTAGTAGTGGCCTTCATTCATTTTGTGATTAGGCACTTTAAACAAAATCT
65 AGACAAACAT-GATTCTAGTAATGACCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCT
* ** * * * * *
62643 TCAGATTAGGATAAAGTA-CAATGATTATTTTCTTTTGTATGAAAATCTTTTCTTTGCTAACTTA
129 CCTCATTAGGATAAA-TATTATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGC---CTTA
* * * *
62707 TTTACCTTATAATCAAAGTTCAACCCTTAAATAAGGTAAGCATCGATTCTCGTAACAATCTCCAT
190 TTTACCTTAAAATCAAAGTTCATCCCTTAAATAAGGCAAGCATCGATTCTCGTAACAGTCTCCAT
* * * * *
62772 TCTTTTCAAGATTAGGAACCAAAAACATATTCCCTTCATTA-GACACAAGACATTGATGCTTTAG
255 TCTTTTCAAGATTGGGAACCAAAAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGG
* ** * * * *
62836 TGACGTAAAAAAGCAATTCTTACCACTGTTTTTTATAGAATCAAAGTTTGACTCTTAAATAAGAC
320 TGACGCAAAAAAGCTTTTCTTACCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGAG
* * *
62901 AAACCTA-AAGAG---T-C--ATCCCTATTCTTTTCATGATTAGGCACCATAAACATTGTCTTCT
385 AAA-CTAGAAGAGTCATACTAATCCCTATTCTTTTCAGGATTAGGCACCATAAACGTAGTCTTCT
*
62959 CATAAGGATACATGATATTGATGCTT
449 CATAAGGATACACGATATTGATGCTT
* * * * * * *
62985 TGGTTTCGCAAGAAAAGCATT-TT----CCAATTTTTGTAAAGTCTGACTTCGTGCCTCGATTGA
1 TGGTTTTGAAAGAAAGGCTTTCTTCCCACCAATTTTTGTAAAGTCTAACTTCGTGCCTCAAATGA
* * * * * *
63045 GGCAAACATGGATTCTTTGTAATGCCCTTCATTCACTTTGTGGTTAGGCACTATAAACACAATCT
66 GACAAACAT-GATTC-TAGTAATGACCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCT
* * * *
63110 TCTCATTAGGATAAAGA-TAATGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCTTTATTTA
129 CCTCATTAGGATAAATATTATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCTTATTTA
* * * * *
63174 CCATAATATCAAAGTTCATCCCCTAAATAAGGCAAGCATCGATTCTTGTAACAGTCACCATTCTT
194 CCTTAAAATCAAAGTTCATCCCTTAAATAAGGCAAGCATCGATTCTCGTAACAGTCTCCATTCTT
* *
63239 TTCAAGATTGGGAA-CAAAAACACATTCCCTTTATTAGGATACATGACATTGATGCTATGGTGAC
259 TTCAAGATTGGGAACCAAAAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGAC
* * * *
63303 GCAAAAAAGCTTTTCTTACCACTGTTTTTGATAAAACCAAAGTTTATCTCTTAAATAAG-GCAAA
324 GCAAAAAAGCTTTTCTTACCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGAG-AAA
* * * * *
63367 C-ATGAAGAGTCATACTAATCCCTATTTTTTTCAAGATTAGGCACCATAAACATAGTCTGCTCGT
388 CTA-GAAGAGTCATACTAATCCCTATTCTTTTCAGGATTAGGCACCATAAACGTAGTCTTCTCAT
* *
63431 AAGGATACACGATACTGATGATT
452 AAGGATACACGATATTGATGCTT
* * * *
63454 TGG-TTTCACAAGAAAAGCTTTCTTCCCACCAATTTTTGTAAAGTCTAACTTTGTGCCTCAAATA
1 TGGTTTTGA-AAGAAAGGCTTTCTTCCCACCAATTTTTGTAAAGTCTAACTTCGTGCCTCAAATG
* * * * * *
63518 AGACAAACATGGATTCTAGGAAAGGCCTCCATTCATTTTGGTGATTAGGCATTATAAACACAATC
65 AGACAAACAT-GATTCTAGTAATGACCTTCATTCATTTT-GTGATTAGGCACTATAAACACATTC
63583 TCCTCATTAGGATAAA-AGTTATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCTTATT
128 TCCTCATTAGGATAAATA-TTATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCTTATT
* *
63647 TAACTTAAAATCAAAGTTCATCCCTTAAATAAGGCAAGCATCGATTCTCATAACAGTC-CCTATT
192 TACCTTAAAATCAAAGTTCATCCCTTAAATAAGGCAAGCATCGATTCTCGTAACAGTCTCC-ATT
* *
63711 CTTTTCAAGATTGGGAACCAAAAACACATTCCCTTCATGA-GATACATGACATTGATACTTTGGT
256 CTTTTCAAGATTGGGAACCAAAAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGT
* *
63775 GACGCAAAAAGAGC-TTTCTTACCACCGTTTTAGATAGAATCAAAGTTTTTC-CTTAAATAAGAG
321 GACGCAAAAA-AGCTTTTCTTACCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGAG
* * * *
63838 AAACTGGAATAGTCATACTAATCCCTGTTCTTTTCAGGATTAGGCACCACAAACGTAGTCTTCTC
385 AAACTAGAAGAGTCATACTAATCCCTATTCTTTTCAGGATTAGGCACCATAAACGTAGTCTTCTC
*
63903 ATATGGATACACGATATTGATGCTT
450 ATAAGGATACACGATATTGATGCTT
* * * * * * *
63928 TGGTTTTGAAACAAAGGATTTCTTCCCTCCAATTTTTGTAATGTCTGACTTCATGCCTCAGATGA
1 TGGTTTTGAAAGAAAGGCTTTCTTCCCACCAATTTTTGTAAAGTCTAACTTCGTGCCTCAAATGA
* * * *
63993 GACAAACATTGATTCTAGTAATGATCTTCATCCATTTTGTGATTAGGCACTGTAAGCACATTCTC
66 GACAAACA-TGATTCTAGTAATGACCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTC
* * * * * *
64058 TTCATTAGGATTAATGTTATTGATGATTTTCTTTTGTATGAAAATCTTTTCTTTGCCCTATTTAC
130 CTCATTAGGATAAATATTATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCTTATTTAC
**
64123 CTTAAAATCAAAGTTCATCCCTTAAATAAGGCAAGCATCGATTCTCGTAATGGTCTCCATTCTTT
195 CTTAAAATCAAAGTTCATCCCTTAAATAAGGCAAGCATCGATTCTCGTAACAGTCTCCATTCTTT
*
64188 TCAAGATTTGGAACCAAAAACACATTCCCTTCATTAGGATACATGACATTGATG-TTATGGTGAC
260 TCAAGATTGGGAACCAAAAACACATTCCCTTCATTAGGATACATGACATTGATGCTT-TGGTGAC
* *
64252 TCAGAAAAAGCTTTTCTTACCACC-TTTATTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAA
324 GCA-AAAAAGCTTTTCTTACCACCGTTT-TTGATAGAATCAAAGTTTGTCTCTTAAATAAGAGAA
* * **
64316 ACAAGAAGAGTCATACTAATCCCTATTTTTTTTCAACATTAGG-----TAAA---A------T-A
387 ACTAGAAGAGTCATACTAATCCCTA-TTCTTTTCAGGATTAGGCACCATAAACGTAGTCTTCTCA
* **
64366 -AA-CATAGTC--TATTGATGCTT
451 TAAGGATACACGATATTGATGCTT
* * * *
64386 TGGTTTTGCAAGAAAGGCTTT-TTGCCTACCAATTTTTGTAAAGTCTAACTTCATGCCTTAAATG
1 TGGTTTTGAAAGAAAGGCTTTCTT-CCCACCAATTTTTGTAAAGTCTAACTTCGTGCCTCAAATG
* * *
64450 AGACAAACATGAATTCTAGTAAGGGCCTTCATTCATTTTGTGATTAGGCACTATAGACACATTCT
65 AGACAAACATG-ATTCTAGTAATGACCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCT
* *
64515 CCTCATTAGGATAAATGTTATTGATGATTTTCTTTTGCATGGTAATCTTTTCTTTGCCTTATTTA
129 CCTCATTAGGATAAATATTATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCTTATTTA
* * * * *
64580 CCCTAAAATCAAAGTTTATCCCTTAAATAAGGCAAGCATTGACTCTCGTAACAGTCGCCATTCTT
194 CCTTAAAATCAAAGTTCATCCCTTAAATAAGGCAAGCATCGATTCTCGTAACAGTCTCCATTCTT
* * * * *
64645 TTCAAGATTGTGAACCAAAAACACATTCCCTTCATGAGGATACATGACATTGATACTTTAGTGGC
259 TTCAAGATTGGGAACCAAAAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGAC
* *
64710 GCAAAAAGAGCTTTTCTTACCACTGTTTTTGATAGAACCAAAGTTTGTCTCTTAAATAAGAGAAA
324 GCAAAAA-AGCTTTTCTTACCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGAGAAA
* * * * *
64775 CTAGAATAGTCATTCTAATCCCTATTCTTTACAGGATTAGGCACTATAAACGTAGTCTTTTCTTA
388 CTAGAAGAGTCATACTAATCCCTATTCTTTTCAGGATTAGGCACCATAAACGTAGTC--TTCTCA
* * *
64840 TGAGGATACACGATTTTAATGCTT
451 TAAGGATACACGATATTGATGCTT
* *
64864 TGCTTTTGAAA-AAAGGCTTTCTTCCCTCCAATTTTTGTAAAGT
1 TGGTTTTGAAAGAAAGGCTTTCTTCCCACCAATTTTTGTAAAGT
64907 TTGACTTTAA
Statistics
Matches: 4110, Mismatches: 509, Indels: 313
0.83 0.10 0.06
Matches are distributed among these distances:
457 26 0.01
458 574 0.14
459 54 0.01
460 5 0.00
461 3 0.00
462 60 0.01
463 251 0.06
465 4 0.00
466 208 0.05
467 57 0.01
468 20 0.00
469 95 0.02
470 4 0.00
471 81 0.02
472 15 0.00
473 206 0.05
474 405 0.10
475 296 0.07
476 228 0.06
477 476 0.12
478 193 0.05
479 9 0.00
480 1 0.00
481 34 0.01
482 374 0.09
483 5 0.00
488 3 0.00
489 2 0.00
492 3 0.00
494 10 0.00
495 384 0.09
496 23 0.01
497 1 0.00
ACGTcount: A:0.32, C:0.19, G:0.15, T:0.35
Consensus pattern (474 bp):
TGGTTTTGAAAGAAAGGCTTTCTTCCCACCAATTTTTGTAAAGTCTAACTTCGTGCCTCAAATGA
GACAAACATGATTCTAGTAATGACCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCC
TCATTAGGATAAATATTATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCTTATTTACC
TTAAAATCAAAGTTCATCCCTTAAATAAGGCAAGCATCGATTCTCGTAACAGTCTCCATTCTTTT
CAAGATTGGGAACCAAAAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGACGC
AAAAAAGCTTTTCTTACCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGAGAAACTA
GAAGAGTCATACTAATCCCTATTCTTTTCAGGATTAGGCACCATAAACGTAGTCTTCTCATAAGG
ATACACGATATTGATGCTT
Found at i:64546 original size:458 final size:458
Alignment explanation
Indices: 63472--67635 Score: 2620
Period size: 477 Copynumber: 8.9 Consensus size: 458
63462 CAAGAAAAGC
* ** * *
63472 TTTCTTCCCACCAATTTTTGTAAAGTCTAACTTTGTGCCTCAAATAAGACAAACATGGATTCTAG
1 TTTCTTCCCTCCAATTTTTGTAAAGTCTAACTTCATGCCTCAAATGAGACAAACATTGATTCTA-
* * * * * * *
63537 GAAAGG-CCTCCATTCATTTTGGTGATTAGGCATTATAAACACAATCTCCTCATTAGGATAAAAG
65 GTAAGGACCTTCATCCATTTT-GTGATTAGGCACTATAAGCACATTCTCCTCATTAGGATAAATG
* * * *
63601 TTATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCTTATTTAACTTAAAATCAAAGTTC
129 TTATTGATGATTTTCTTTTGCATGAAAATCTTTTCTTTGCCCTATTTACCCTAAAATCAAAGTTC
* * *
63666 ATCCCTTAAATAAGGCAAGCATCGATTCTCATAACAGTC-CCTATTCTTTTCAAGATTGGGAACC
194 ATCCCTTAAATAAGGCAAGCATCGACTCTCGTAACAGTCGCC-ATTCTTTTCAAGATTGTGAACC
*
63730 AAAAACACATTCCCTTCATGA-GATACATGACATTGATACTTTGGTGACGCAAAAAGAGC-TTTC
258 AAAAACACATTCCCTTCATGAGGATACATGACATTGATACTTTAGTGACGCAAAAAGAGCTTTTC
* * * * ** *
63793 TTACCACCGTT-TTAGATAGAATCAAAGTTTTTC-CTTAAATAAGAGAAACTGGAATAGTCATAC
323 TTACCACTGTTATT-GATAGAACCAAAGTTTGTCTCTTAAATAAGACAAACAAGAAGAGTCATAC
* * ** * **
63856 TAATCCCT-GTTCTTTTCAGGATTAGGCACCACAAACGTAGTCTTCTCATATGGATACACGATAT
387 TAATCCCTATTTTTTTTCAACATTAGG---TA-AAA--TA-----AACATA--G-T---C--TAT
63920 TGATGCTTTGGTTTTGAAACAAAGGA
433 TGATGCTTTGGTTTTGAAACAAAGGA
* * *
63946 TTTCTTCCCTCCAATTTTTGTAATGTCTGACTTCATGCCTCAGATGAGACAAACATTGATTCTAG
1 TTTCTTCCCTCCAATTTTTGTAAAGTCTAACTTCATGCCTCAAATGAGACAAACATTGATTCTAG
* * * * *
64011 TAATGATCTTCATCCATTTTGTGATTAGGCACTGTAAGCACATTCTCTTCATTAGGATTAATGTT
66 TAAGGACCTTCATCCATTTTGTGATTAGGCACTATAAGCACATTCTCCTCATTAGGATAAATGTT
* *
64076 ATTGATGATTTTCTTTTGTATGAAAATCTTTTCTTTGCCCTATTTACCTTAAAATCAAAGTTCAT
131 ATTGATGATTTTCTTTTGCATGAAAATCTTTTCTTTGCCCTATTTACCCTAAAATCAAAGTTCAT
* ** *
64141 CCCTTAAATAAGGCAAGCATCGATTCTCGTAATGGTCTCCATTCTTTTCAAGATT-TGGAACCAA
196 CCCTTAAATAAGGCAAGCATCGACTCTCGTAACAGTCGCCATTCTTTTCAAGATTGT-GAACCAA
* * * *
64205 AAACACATTCCCTTCATTAGGATACATGACATTGAT-GTTATGGTGACTCAGAAAA-AGCTTTTC
260 AAACACATTCCCTTCATGAGGATACATGACATTGATACTT-TAGTGACGCA-AAAAGAGCTTTTC
*
64268 TTACCACCT-TTATTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACAAGAAGAGTCATAC
323 TTACCA-CTGTTATTGATAGAACCAAAGTTTGTCTCTTAAATAAGACAAACAAGAAGAGTCATAC
*
64332 TAATCCCTATTTTTTTTCAACATTAGGTAAAATAAACATAGTCTATTGATGCTTTGGTTTTGCAA
387 TAATCCCTATTTTTTTTCAACATTAGGTAAAATAAACATAGTCTATTGATGCTTTGGTTTTGAAA
* *
64397 GAAAGGC
452 CAAAGGA
* *
64404 TTT-TTGCCTACCAATTTTTGTAAAGTCTAACTTCATGCCTTAAATGAGACAAACA-TGAATTCT
1 TTTCTTCCCT-CCAATTTTTGTAAAGTCTAACTTCATGCCTCAAATGAGACAAACATTG-ATTCT
* *
64467 AGTAAGGGCCTTCATTCATTTTGTGATTAGGCACTAT-AGACACATTCTCCTCATTAGGATAAAT
64 AGTAAGGACCTTCATCCATTTTGTGATTAGGCACTATAAG-CACATTCTCCTCATTAGGATAAAT
** *
64531 GTTATTGATGATTTTCTTTTGCATGGTAATCTTTTCTTTGCCTTATTTACCCTAAAATCAAAGTT
128 GTTATTGATGATTTTCTTTTGCATGAAAATCTTTTCTTTGCCCTATTTACCCTAAAATCAAAGTT
* *
64596 TATCCCTTAAATAAGGCAAGCATTGACTCTCGTAACAGTCGCCATTCTTTTCAAGATTGTGAACC
193 CATCCCTTAAATAAGGCAAGCATCGACTCTCGTAACAGTCGCCATTCTTTTCAAGATTGTGAACC
*
64661 AAAAACACATTCCCTTCATGAGGATACATGACATTGATACTTTAGTGGCGCAAAAAGAGCTTTTC
258 AAAAACACATTCCCTTCATGAGGATACATGACATTGATACTTTAGTGACGCAAAAAGAGCTTTTC
* * * * *
64726 TTACCACTGTTTTTGATAGAACCAAAGTTTGTCTCTTAAATAAGAGAAACTAGAATAGTCATTCT
323 TTACCACTGTTATTGATAGAACCAAAGTTTGTCTCTTAAATAAGACAAACAAGAAGAGTCATACT
* * ** ** *
64791 AATCCCTA-TTCTTTACAGGATTAGGCACTATAAACGTAGTCTTTTCTTATGAGGATACACGATT
388 AATCCCTATTTTTTTTCAACATTAGG---TA-AAA--TA-----AAC--AT-A-G-T---C--TA
* * *
64855 TTAATGCTTTGCTTTTGAAA-AAAGGC
432 TTGATGCTTTGGTTTTGAAACAAAGGA
* * * * ** * * ***** ***
64881 TTTCTTCCCTCCAATTTTTGTAAAGTTTGACTTTAATGATCTTTATTTA-TTTTGCAATTAGGCA
1 TTTCTTCCCTCCAATTTTTGTAAAGTCTAAC-TTCATG-CCTCAAATGAGACAAAC-ATT-GATT
** * * * ***** * * *
64945 CTA-TAAACACATTC-T-CATCATTAG-GAATAAATGTTATTAATG---ATTCTCTTTTATAAGG
62 CTAGTAAGGACCTTCATCCAT--TTTGTGATTAGGCACTA-TAA-GCACATTCTC-CTCATTAGG
* *** * * * **** ** ** *
65003 --AAATCTT-TCT--T--TGGCCTATTTACCTTAAAATC-AAAGTTTATCC-A-TTA-AAT-AAG
122 ATAAATGTTAT-TGATGATTTTCT-TTTGCATGAAAATCTTTTCTTTGCCCTATTTACCCTAAAA
* ** * * * *
65056 GC-AAG--CATCGATT--CTTA---TA--AT--A-----GT--C--T--CCATTCTTTTTAAGAT
185 TCAAAGTTCATCCCTTAAATAAGGCAAGCATCGACTCTCGTAACAGTCGCCATTCTTTTCAAGAT
* * * * * * * *
65098 TGGGAGCCAAAAACACATTCCCTTCATTAGGGTACATGACATTGATGCTCTATTGACGCAAAAAA
250 TGTGAACCAAAAACACATTCCCTTCATGAGGATACATGACATTGATACTTTAGTGACGCAAAAAG
* * *
65163 AGCTTTTCTTACCACTGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAGACATA-AAG
315 AGCTTTTCTTACCACTGTTATTGATAGAACCAAAGTTTGTCTCTTAAATAAGACAAACA-AGAAG
* * **
65227 AGTCATACTAATCCCTA-TTCTTTTCAAGATTAGGCACCATAAACATAGTCTTCTCATAAGGATA
379 AGTCATACTAATCCCTATTTTTTTTCAACATTAGG-----TAAA-ATA-----AACAT-A-G-T-
* * * * *
65291 CACGATATTGATGATTTGG-TTTCACAAGAAAAGC
429 --C--TATTGATGCTTTGGTTTTGA-AACAAAGGA
* * * * * *
65325 TTTCTTCTCACCAATTTTTTTAAAGTCTTACTTCGTGCCTCAAATGAGACAAACACTGATTCTAG
1 TTTCTTCCCTCCAATTTTTGTAAAGTCTAACTTCATGCCTCAAATGAGACAAACATTGATTCTAG
* ** * * * **
65390 CAATAATCTTCATTCATTTTTTGATTAGGCACTATAAATACATTCT-CT--TTAGGATAAATGTT
66 TAAGGACCTTCATCCATTTTGTGATTAGGCACTATAAGCACATTCTCCTCATTAGGATAAATGTT
* * * ** * *
65452 AATGATGATTTTCTTTTGCATGGAAGTCTTTTCTTTGTGCGATTTACCTTAAAATCAAAGTTCAT
131 ATTGATGATTTTCTTTTGCATGAAAATCTTTTCTTTGCCCTATTTACCCTAAAATCAAAGTTCAT
* * * * *
65517 CCCTTAAAAAAGGCAAGCATTGA-TCCTCGTAACAGTCTCTATTCTTTTCAAGATTGGGAACC-A
196 CCCTTAAATAAGGCAAGCATCGACT-CTCGTAACAGTCGCCATTCTTTTCAAGATTGTGAACCAA
* * * ** * * * * *
65580 AAACACATTCCTTTCAAT-AGCATAGACAACATT-ATTGCTTTGGTGATGCAAAAAAAAACTTTT
260 AAACACATTCCCTTC-ATGAGGATACATGACATTGA-TACTTTAGTGACGC-AAAAAGAGCTTTT
* ** * * * * * * * * *
65643 CTTTCCACCAATT-TTGATAAAATCAAAGTTTATCTATTAAAGAAGAGAAACTAGAATAGTCAAA
322 CTTACCA-CTGTTATTGATAGAACCAAAGTTTGTCTCTTAAATAAGACAAACAAGAAGAGTCATA
* * * ** * **
65707 CTAATCCCT-GTTCTTCTCAGGA-TAGGCACCATAAGCATAGTCTTCTCATAAGGATACACGATA
386 CTAATCCCTATTTTTTTTCAACATTAGG-----TAA--A-A------T-A-AA-CATAGTC--TA
* * * * *
65770 CTGATGCTTTGCTTTTGAAAGAAATGC
432 TTGATGCTTTGGTTTTGAAACAAAGGA
* ** *
65797 TTTCTTCCC-CCAATTTTTGTAAAGTCTGACTTTGTGCCTCAAATGAGACAAAAATTGATTCTAG
1 TTTCTTCCCTCCAATTTTTGTAAAGTCTAACTTCATGCCTCAAATGAGACAAACATTGATTCTAG
* * * * * * * * ** *
65861 TAATGATCTTCATTCATTTTGAGATTAGCCACCATAAACCCATTCTAATCATTAGGATAACTGTT
66 TAAGGACCTTCATCCATTTTGTGATTAGGCACTATAAGCACATTCTCCTCATTAGGATAAATGTT
* * *
65926 ATTGATGATTTTCTTTCGCATGAAAATCTTTTCTTTGCCCTATTTACCTTAAAATCAAAATTCAT
131 ATTGATGATTTTCTTTTGCATGAAAATCTTTTCTTTGCCCTATTTACCCTAAAATCAAAGTTCAT
* * * * * * *
65991 CCCTTAAAAAAGGCAAGCATTGATTCTTGTAACAATCTCCATTCTTTTCAAGATTGGGAACCAAA
196 CCCTTAAATAAGGCAAGCATCGACTCTCGTAACAGTCGCCATTCTTTTCAAGATTGTGAACCAAA
* * * * * * *
66056 AACACATTCCTTTCATTAGCATACATGACATTGATGCTTTGGTGACGCAAAAAAAGCTTTTCTTT
261 AACACATTCCCTTCATGAGGATACATGACATTGATACTTTAGTGACGCAAAAAGAGCTTTTCTTA
* * * * * * * *
66121 TCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGAGAAACTAGAATAGTCAAACTAAT
326 CCACTGTTATTGATAGAACCAAAGTTTGTCTCTTAAATAAGACAAACAAGAAGAGTCATACTAAT
* * ** * * * *
66186 CCCTA-TTCTTCTCAGGATTAGGCACCATAAATGTAGTCTTCTCATAAGGATACATGATATTTAT
391 CCCTATTTTTTTTCAACATTAGG-----TAAA---A------T-A-AA-CATA-GT-CTATTGAT
* *
66250 GCTTTGGTTTTGAAATAAAGGC
437 GCTTTGGTTTTGAAACAAAGGA
* * * * * *
66272 TTTCTTCCCCCCAACTTTTGCAAAGTCTGACTTCAAGCCTCAAATAAGACAAACATTGATTCTAG
1 TTTCTTCCCTCCAATTTTTGTAAAGTCTAACTTCATGCCTCAAATGAGACAAACATTGATTCTAG
* * * *
66337 TAA-TAGTCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGT
66 TAAGGA-CCTTCATCCATTTTGTGATTAGGCACTATAAGCACATTCTCCTCATTAGGATAAATGT
* * * *
66401 TATTGATGATTTTCTTTTGCGTGGAAATCTTTTCTTTGCGCTATTTACCTTAAAATCAAAGTTCA
130 TATTGATGATTTTCTTTTGCATGAAAATCTTTTCTTTGCCCTATTTACCCTAAAATCAAAGTTCA
* * * * * *
66466 TCCCTTAAAAAAAGGCAAGCATTGATTCTTGTAACAGTCTCCATTCTTTTCAAGATTGGGAACCA
195 TCCCTT-AAATAAGGCAAGCATCGACTCTCGTAACAGTCGCCATTCTTTTCAAGATTGTGAACCA
* * * * * * * *
66531 AAAACACATTCCTTTCATTAGCATACATGACATTGATGCTTTGGTGATGGAAAAAAAGCTTTTCT
259 AAAACACATTCCCTTCATGAGGATACATGACATTGATACTTTAGTGACGCAAAAAGAGCTTTTCT
* ** * * * * * * * *
66596 TGCCACCATTTTTGATAGAATCAAAGTTTGTCTGTTAAATAAGAGAAACTAGAATAGTTAAACTA
324 TACCACTGTTATTGATAGAACCAAAGTTTGTCTCTTAAATAAGACAAACAAGAAGAGTCATACTA
* ** *
66661 ATCCCTA-TTCTTTTCAGGATTAGGCACCATAAAAGTAGTCTTCTCATCTGGACATACG-ATATT
389 ATCCCTATTTTTTTTCAACATTAGG-----TAAAA-TA--------A-----ACATA-GTCTATT
* * *
66724 GATGTTTTGGTTTTGAAAGAAAGGC
434 GATGCTTTGGTTTTGAAACAAAGGA
* * * * *
66749 TTTCTTCCC-CCTAATTTCTATGAAGTCTGACTTCGTGCCTCAAATGAGACAAACATTGATTCTA
1 TTTCTTCCCTCC-AATTTTTGTAAAGTCTAACTTCATGCCTCAAATGAGACAAACATTGATTCTA
** * * * * * * *
66813 GTAATAATCTTCATTCATTTTGAGATTAGGCACCATAAACCCATTCTCCTCATTAGGATAATTGC
65 GTAAGGACCTTCATCCATTTTGTGATTAGGCACTATAAGCACATTCTCCTCATTAGGATAAATG-
*
66878 TTATTGATGATTTTCTTTTGCATGAAAATCTTTTCTTTGCCCTATTTA-CCTTAAATCAAAGTTC
129 TTATTGATGATTTTCTTTTGCATGAAAATCTTTTCTTTGCCCTATTTACCCTAAAATCAAAGTTC
* * * * * *
66942 ATCCTTTAAATAAGGCAAGCATCGATTCTCGTAACAGTCTCTATTCTTTTCAAGATTGGGAACAA
194 ATCCCTTAAATAAGGCAAGCATCGACTCTCGTAACAGTCGCCATTCTTTTCAAGATTGTGAACCA
* * * * *
67007 AAAACACATTCCTTTCATTAGCATACATGACATTGATGACTTTGGTGACGCAAAAAAAGCTTTTC
259 AAAACACATTCCCTTCATGAGGATACATGACATTGAT-ACTTTAGTGACGCAAAAAGAGCTTTTC
* * * * * * *
67072 TTTA-CACCGTTTTTGATAGAATCAAAGTTTGTTTCTTAAATAAGAGAAACTAGAATAGTCA-AT
323 -TTACCACTGTTATTGATAGAACCAAAGTTTGTCTCTTAAATAAGACAAACAAGAAGAGTCATA-
* ** * *
67135 CTAATCCCTATTATTTTT-ATGATTAGGCACCATAAACATAGTCTTATCATAAGGACACACGATA
386 CTAATCCCTATTTTTTTTCAACATTAGG-----TAAA-ATA-----AACAT-A-G----TC--TA
* *
67199 TTGATG-TTTCGGTTTTGAAAGAAAGGC
432 TTGATGCTTT-GGTTTTGAAACAAAGGA
* * * ***
67226 TTTTTTCCC-CTTAATTTTTGTAAAGTCTGACTAGGTGCCTCAAATGAGACAAACATTGATTCTA
1 TTTCTTCCCTC-CAATTTTTGTAAAGTCTAACTTCATGCCTCAAATGAGACAAACATTGATTCTA
* * * * * *
67290 GTAATGATCTTCA-CTCATTTTATGATTAGGCACCATAAAC-CAATTCTCCTCATTAGGATAATT
65 GTAAGGACCTTCATC-CATTTTGTGATTAGGCACTATAAGCAC-ATTCTCCTCATTAGGATAAAT
* * * * * *
67353 GCTATTGATGATTTTCTTTTGCATGGAAATCTTTTCTCTACCCTATTTA-CCTTAAATCAAATTT
128 GTTATTGATGATTTTCTTTTGCATGAAAATCTTTTCTTTGCCCTATTTACCCTAAAATCAAAGTT
* * * * *
67417 CATCCCCTAAATAAGGCAAGCATCGATTCTCGTAACAGTCTCCATTCTTTTTAAGATTGGGAACC
193 CATCCCTTAAATAAGGCAAGCATCGACTCTCGTAACAGTCGCCATTCTTTTCAAGATTGTGAACC
** * * * * * *
67482 AAAAACACATTCCCTTCATTTGGATACATGACATTGATGCTATGGTGATGCAAAAATA-TTTTTC
258 AAAAACACATTCCCTTCATGAGGATACATGACATTGATACTTTAGTGACGCAAAAAGAGCTTTTC
* * * ** *
67546 TTATCACTATTTTTGATAGAATGAAAGTTTGTCTCTTAAATAAGACAAACATGAAGAGTCATACT
323 TTACCACTGTTATTGATAGAACCAAAGTTTGTCTCTTAAATAAGACAAACAAGAAGAGTCATACT
* *
67611 AATCCCTA-TTCTTTTCAAGATTAGG
388 AATCCCTATTTTTTTTCAACATTAGG
67636 CACCATAACT
Statistics
Matches: 3079, Mismatches: 440, Indels: 342
0.80 0.11 0.09
Matches are distributed among these distances:
440 4 0.00
441 4 0.00
442 30 0.01
443 37 0.01
444 40 0.01
445 177 0.06
446 11 0.00
447 6 0.00
448 3 0.00
449 2 0.00
450 3 0.00
451 5 0.00
453 6 0.00
455 1 0.00
456 1 0.00
457 28 0.01
458 365 0.12
459 3 0.00
460 6 0.00
461 3 0.00
462 1 0.00
463 5 0.00
464 1 0.00
465 5 0.00
466 4 0.00
467 5 0.00
468 5 0.00
469 6 0.00
470 7 0.00
471 94 0.03
472 87 0.03
473 308 0.10
474 396 0.13
475 160 0.05
476 464 0.15
477 666 0.22
478 98 0.03
479 22 0.01
480 7 0.00
481 3 0.00
ACGTcount: A:0.32, C:0.19, G:0.14, T:0.36
Consensus pattern (458 bp):
TTTCTTCCCTCCAATTTTTGTAAAGTCTAACTTCATGCCTCAAATGAGACAAACATTGATTCTAG
TAAGGACCTTCATCCATTTTGTGATTAGGCACTATAAGCACATTCTCCTCATTAGGATAAATGTT
ATTGATGATTTTCTTTTGCATGAAAATCTTTTCTTTGCCCTATTTACCCTAAAATCAAAGTTCAT
CCCTTAAATAAGGCAAGCATCGACTCTCGTAACAGTCGCCATTCTTTTCAAGATTGTGAACCAAA
AACACATTCCCTTCATGAGGATACATGACATTGATACTTTAGTGACGCAAAAAGAGCTTTTCTTA
CCACTGTTATTGATAGAACCAAAGTTTGTCTCTTAAATAAGACAAACAAGAAGAGTCATACTAAT
CCCTATTTTTTTTCAACATTAGGTAAAATAAACATAGTCTATTGATGCTTTGGTTTTGAAACAAA
GGA
Found at i:66636 original size:477 final size:476
Alignment explanation
Indices: 64937--67687 Score: 3762
Period size: 477 Copynumber: 5.8 Consensus size: 476
64927 TTATTTTGCA
* * * * ** *
64937 ATTAGGCACTATAAACACATTCTCATCATTAGGAATAAATGTTATTAATGATTCTCTTTTATAAG
1 ATTAGGCACCATAAACACATTCTCCTCATTAGG-ATAAATGTTATTGATGATTTTCTTTTGCATG
* * * *
65002 GAAATC-TTTCTTTGGCCTATTTACCTTAAAATCAAAGTTTATCCATTAAATAAGGCAAGCATCG
65 GAAATCTTTTCTTTGCCCTATTTACCTTAAAATCAAAGTTCATCCCTTAAAAAAGGCAAGCATCG
** * * * * **
65066 ATTCTTATAATAGTCTCCATTCTTTTTAAGATTGGGAGCCAAAAACACATTCCCTTCATTAGGGT
130 ATTCTCGTAACAGTCTCCATTCTTTTCAAGATTGGGAACCAAAAACACATTCCTTTCATTAGCAT
* ** * **
65131 ACATGACATTGATGCTCTATTGACGCAAAAAAAGCTTTTCTTACCACTGTTTTTGATAGAATCAA
195 ACATGACATTGATGCTTTGGTGACGCAAAAAAAGCTTTTCTTTCCACCATTTTTGATAGAATCAA
* * * * *
65196 AGTTTGTCTCTTAAATAAGACAGACATA-AAGAGTCATACTAATCCCTATTCTTTTCAAGATTAG
260 AGTTTGTCTCTTAAATAAGAGAAAC-TAGAATAGTCAAACTAATCCCTATTCTTTTCAGGATTAG
* * *
65260 GCACCATAAACATAGTCTTCTCATAAGGATACACGATATTGATGATTTGG-TTTCACAAGAAAAG
324 GCACCATAAACATAGTCTTCTCATAAGGATACACGATATTGATGCTTTGGTTTTGA-AAGAAAGG
* * * * *
65324 CTTTCTTCTCACCAATTTTTTTAAAGTCTTACTTCGTGCCTCAAATGAGACAAACACTGATTCTA
388 CTTTCTTCCCCCCAATTTTTGTAAAGTCTGACTTCGTGCCTCAAATGAGACAAACATTGATTCTA
* * *
65389 GCAATAATCTTCATTCATTTTTTG
453 GTAATAGTCTTCATTCATTTTGTG
* * *
65413 ATTAGGCACTATAAATACATTCT-CT--TTAGGATAAATGTTAATGATGATTTTCTTTTGCATGG
1 ATTAGGCACCATAAACACATTCTCCTCATTAGGATAAATGTTATTGATGATTTTCTTTTGCATGG
* ** * *
65475 AAGTCTTTTCTTTGTGCGATTTACCTTAAAATCAAAGTTCATCCCTTAAAAAAGGCAAGCATTGA
66 AAATCTTTTCTTTGCCCTATTTACCTTAAAATCAAAGTTCATCCCTTAAAAAAGGCAAGCATCGA
* * *
65540 TCCTCGTAACAGTCTCTATTCTTTTCAAGATTGGGAACC-AAAACACATTCCTTTCAATAGCATA
131 TTCTCGTAACAGTCTCCATTCTTTTCAAGATTGGGAACCAAAAACACATTCCTTTCATTAGCATA
* ** * * * *
65604 GACAACATT-ATTGCTTTGGTGATGCAAAAAAAAACTTTTCTTTCCACCAATTTTGATAAAATCA
196 CATGACATTGA-TGCTTTGGTGACGC-AAAAAAAGCTTTTCTTTCCACCATTTTTGATAGAATCA
* * * * *
65668 AAGTTTATCTATTAAAGAAGAGAAACTAGAATAGTCAAACTAATCCCTGTTCTTCTCAGGA-TAG
259 AAGTTTGTCTCTTAAATAAGAGAAACTAGAATAGTCAAACTAATCCCTATTCTTTTCAGGATTAG
* * * *
65732 GCACCATAAGCATAGTCTTCTCATAAGGATACACGATACTGATGCTTTGCTTTTGAAAGAAATGC
324 GCACCATAAACATAGTCTTCTCATAAGGATACACGATATTGATGCTTTGGTTTTGAAAGAAAGGC
* *
65797 TTTCTT-CCCCCAATTTTTGTAAAGTCTGACTTTGTGCCTCAAATGAGACAAAAATTGATTCTAG
389 TTTCTTCCCCCCAATTTTTGTAAAGTCTGACTTCGTGCCTCAAATGAGACAAACATTGATTCTAG
*
65861 TAAT-GATCTTCATTCATTTTGAG
454 TAATAG-TCTTCATTCATTTTGTG
* * ** * * *
65884 ATTAGCCACCATAAACCCATTCTAATCATTAGGATAACTGTTATTGATGATTTTCTTTCGCATGA
1 ATTAGGCACCATAAACACATTCTCCTCATTAGGATAAATGTTATTGATGATTTTCTTTTGCATGG
* *
65949 AAATCTTTTCTTTGCCCTATTTACCTTAAAATCAAAATTCATCCCTTAAAAAAGGCAAGCATTGA
66 AAATCTTTTCTTTGCCCTATTTACCTTAAAATCAAAGTTCATCCCTTAAAAAAGGCAAGCATCGA
* *
66014 TTCTTGTAACAATCTCCATTCTTTTCAAGATTGGGAACCAAAAACACATTCCTTTCATTAGCATA
131 TTCTCGTAACAGTCTCCATTCTTTTCAAGATTGGGAACCAAAAACACATTCCTTTCATTAGCATA
* *
66079 CATGACATTGATGCTTTGGTGACGCAAAAAAAGCTTTTCTTTTCACCGTTTTTGATAGAATCAAA
196 CATGACATTGATGCTTTGGTGACGCAAAAAAAGCTTTTCTTTCCACCATTTTTGATAGAATCAAA
*
66144 GTTTGTCTCTTAAATAAGAGAAACTAGAATAGTCAAACTAATCCCTATTCTTCTCAGGATTAGGC
261 GTTTGTCTCTTAAATAAGAGAAACTAGAATAGTCAAACTAATCCCTATTCTTTTCAGGATTAGGC
** * * *
66209 ACCATAAATGTAGTCTTCTCATAAGGATACATGATATTTATGCTTTGGTTTTGAAATAAAGGCTT
326 ACCATAAACATAGTCTTCTCATAAGGATACACGATATTGATGCTTTGGTTTTGAAAGAAAGGCTT
* * ** *
66274 TCTTCCCCCCAACTTTTGCAAAGTCTGACTTCAAGCCTCAAATAAGACAAACATTGATTCTAGTA
391 TCTTCCCCCCAATTTTTGTAAAGTCTGACTTCGTGCCTCAAATGAGACAAACATTGATTCTAGTA
66339 ATAGTCTTCATTCATTTTGTG
456 ATAGTCTTCATTCATTTTGTG
* *
66360 ATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGTTATTGATGATTTTCTTTTGCGTGG
1 ATTAGGCACCATAAACACATTCTCCTCATTAGGATAAATGTTATTGATGATTTTCTTTTGCATGG
* *
66425 AAATCTTTTCTTTGCGCTATTTACCTTAAAATCAAAGTTCATCCCTTAAAAAAAGGCAAGCATTG
66 AAATCTTTTCTTTGCCCTATTTACCTTAAAATCAAAGTTCATCCCTT-AAAAAAGGCAAGCATCG
*
66490 ATTCTTGTAACAGTCTCCATTCTTTTCAAGATTGGGAACCAAAAACACATTCCTTTCATTAGCAT
130 ATTCTCGTAACAGTCTCCATTCTTTTCAAGATTGGGAACCAAAAACACATTCCTTTCATTAGCAT
* * *
66555 ACATGACATTGATGCTTTGGTGATGGAAAAAAAGCTTTTCTTGCCACCATTTTTGATAGAATCAA
195 ACATGACATTGATGCTTTGGTGACGCAAAAAAAGCTTTTCTTTCCACCATTTTTGATAGAATCAA
* *
66620 AGTTTGTCTGTTAAATAAGAGAAACTAGAATAGTTAAACTAATCCCTATTCTTTTCAGGATTAGG
260 AGTTTGTCTCTTAAATAAGAGAAACTAGAATAGTCAAACTAATCCCTATTCTTTTCAGGATTAGG
** * * *
66685 CACCATAAA-AGTAGTCTTCTCATCTGGACATACGATATTGATGTTTTGGTTTTGAAAGAAAGGC
325 CACCATAAACA-TAGTCTTCTCATAAGGATACACGATATTGATGCTTTGGTTTTGAAAGAAAGGC
* * * *
66749 TTTCTTCCCCCTAATTTCTATGAAGTCTGACTTCGTGCCTCAAATGAGACAAACATTGATTCTAG
389 TTTCTTCCCCCCAATTTTTGTAAAGTCTGACTTCGTGCCTCAAATGAGACAAACATTGATTCTAG
* *
66814 TAATAATCTTCATTCATTTTGAG
454 TAATAGTCTTCATTCATTTTGTG
* *
66837 ATTAGGCACCATAAACCCATTCTCCTCATTAGGATAATTGCTTATTGATGATTTTCTTTTGCATG
1 ATTAGGCACCATAAACACATTCTCCTCATTAGGATAAATG-TTATTGATGATTTTCTTTTGCATG
* * *
66902 AAAATCTTTTCTTTGCCCTATTTACCTT-AAATCAAAGTTCATCCTTTAAATAAGGCAAGCATCG
65 GAAATCTTTTCTTTGCCCTATTTACCTTAAAATCAAAGTTCATCCCTTAAAAAAGGCAAGCATCG
* *
66966 ATTCTCGTAACAGTCTCTATTCTTTTCAAGATTGGGAACAAAAAACACATTCCTTTCATTAGCAT
130 ATTCTCGTAACAGTCTCCATTCTTTTCAAGATTGGGAACCAAAAACACATTCCTTTCATTAGCAT
* *
67031 ACATGACATTGATGACTTTGGTGACGCAAAAAAAGCTTTTCTTTACACCGTTTTTGATAGAATCA
195 ACATGACATTGATG-CTTTGGTGACGCAAAAAAAGCTTTTCTTTCCACCATTTTTGATAGAATCA
* * * * *
67096 AAGTTTGTTTCTTAAATAAGAGAAACTAGAATAGTCAATCTAATCCCTATTATTTTTATGATTAG
259 AAGTTTGTCTCTTAAATAAGAGAAACTAGAATAGTCAAACTAATCCCTATTCTTTTCAGGATTAG
* *
67161 GCACCATAAACATAGTCTTATCATAAGGACACACGATATTGATG-TTTCGGTTTTGAAAGAAAGG
324 GCACCATAAACATAGTCTTCTCATAAGGATACACGATATTGATGCTTT-GGTTTTGAAAGAAAGG
* ** **
67225 CTTTTTTCCCCTTAATTTTTGTAAAGTCTGACTAGGTGCCTCAAATGAGACAAACATTGATTCTA
388 CTTTCTTCCCCCCAATTTTTGTAAAGTCTGACTTCGTGCCTCAAATGAGACAAACATTGATTCTA
* *
67290 GTAAT-GATCTTCACTCATTTTATG
453 GTAATAG-TCTTCATTCATTTTGTG
* *
67314 ATTAGGCACCATAAAC-CAATTCTCCTCATTAGGATAATTGCTATTGATGATTTTCTTTTGCATG
1 ATTAGGCACCATAAACAC-ATTCTCCTCATTAGGATAAATGTTATTGATGATTTTCTTTTGCATG
* * * * *
67378 GAAATCTTTTCTCTACCCTATTTACCTT-AAATCAAATTTCATCCCCTAAATAAGGCAAGCATCG
65 GAAATCTTTTCTTTGCCCTATTTACCTTAAAATCAAAGTTCATCCCTTAAAAAAGGCAAGCATCG
* * * *
67442 ATTCTCGTAACAGTCTCCATTCTTTTTAAGATTGGGAACCAAAAACACATTCCCTTCATTTGGAT
130 ATTCTCGTAACAGTCTCCATTCTTTTCAAGATTGGGAACCAAAAACACATTCCTTTCATTAGCAT
* * * * * *
67507 ACATGACATTGATGCTATGGTGATGCAAAAATA-TTTTTCTTAT-CACTATTTTTGATAGAATGA
195 ACATGACATTGATGCTTTGGTGACGCAAAAAAAGCTTTTCTT-TCCACCATTTTTGATAGAATCA
* * * *
67570 AAGTTTGTCTCTTAAATAAGACAAAC-ATGAAGAGTCATACTAATCCCTATTCTTTTCAAGATTA
259 AAGTTTGTCTCTTAAATAAGAGAAACTA-GAATAGTCAAACTAATCCCTATTCTTTTCAGGATTA
*
67634 GGCACCAT-AACTATAGTCTTCTCATAAGGATACACGATATTGATACTTTGGTTT
323 GGCACCATAAAC-ATAGTCTTCTCATAAGGATACACGATATTGATGCTTTGGTTT
67688 CACAAGAAAA
Statistics
Matches: 2023, Mismatches: 226, Indels: 54
0.88 0.10 0.02
Matches are distributed among these distances:
471 89 0.04
472 133 0.07
473 177 0.09
474 339 0.17
475 129 0.06
476 444 0.22
477 662 0.33
478 50 0.02
ACGTcount: A:0.32, C:0.19, G:0.14, T:0.36
Consensus pattern (476 bp):
ATTAGGCACCATAAACACATTCTCCTCATTAGGATAAATGTTATTGATGATTTTCTTTTGCATGG
AAATCTTTTCTTTGCCCTATTTACCTTAAAATCAAAGTTCATCCCTTAAAAAAGGCAAGCATCGA
TTCTCGTAACAGTCTCCATTCTTTTCAAGATTGGGAACCAAAAACACATTCCTTTCATTAGCATA
CATGACATTGATGCTTTGGTGACGCAAAAAAAGCTTTTCTTTCCACCATTTTTGATAGAATCAAA
GTTTGTCTCTTAAATAAGAGAAACTAGAATAGTCAAACTAATCCCTATTCTTTTCAGGATTAGGC
ACCATAAACATAGTCTTCTCATAAGGATACACGATATTGATGCTTTGGTTTTGAAAGAAAGGCTT
TCTTCCCCCCAATTTTTGTAAAGTCTGACTTCGTGCCTCAAATGAGACAAACATTGATTCTAGTA
ATAGTCTTCATTCATTTTGTG
Found at i:68727 original size:477 final size:473
Alignment explanation
Indices: 67717--70721 Score: 3491
Period size: 477 Copynumber: 6.4 Consensus size: 473
67707 CATTAGGCAC
* * * * * ** * *
67717 TTTGTGATTAGGCACTTTAAACA-AATCTTCACATTAGGATAAAGGACAATGATTATTTTCTTTT
1 TTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGTTATTGATGATTTTCTTTT
*
67781 GCATGGAAATCTTTTCTTTGCCTTATTTACCTTATAATCAAAGTTCATCCCTTAAATAAGGCAAG
66 GCATGGAAATCTTTTCTTTGCCTTATTTACCTTAAAATCAAAGTTCATCCCTTAAATAAGGCAAG
* * *
67846 CATCGATTCTCGTAACAATCTCCATTCTTTTCAAGATT-AGGAACCAAAAACATATTCCCGTCAT
131 CATCGATTCTCGTAACAGTCTCCATTCTTTTCAAGATTGA-GAACCAAAAACACATTCCCTTCAT
* * * * * * ** *
67910 TA-GAGACAAGACATTGATTCTTTGGTGACGCAAAAAAGCATGTCTTACCATTGTTTTTTATAGA
195 TAGGATACATGACATTGATACTATGGTGACGCAAAAAAGCTTTTCTTACCACCGTTTTTGATAGA
* * *
67974 ATCAAAGTTTGACTCTTAAATAAGACAAACATGAAGAG---T-C--ATCCGTATTATTTTCATGA
260 ATCAAAGTTTGTCTCTTAAATAAGACAAACA-GAAGAGTCATACTAATCCCTATT-TTTTCAAGA
* * *
68033 TTAGGCACCATAAACATAGTCTTCTCATATGGATACAAGATATTGATGCTTTGGTTTCGCAAGAA
323 TTAGGCACCATAAACATAGTCTTCTCATAAGGATACACGATATTGATGCTTTGGTTTTGCAAGAA
* * * * *
68098 AAGC-ATTTTCCCACCAATTTTTGTAAAGCCTGACTTCGTGCCTCAATTGAGGCAAACATGGATT
388 AGGCTTTTTTCCCACCAATTTTTGTAAAGTCTAACTTCGTGCCTCAATTGAGACAAACATGGATT
* *
68162 CTTGTAATGCCCTTCATTCAT
453 CTAGTAATGGCCTTCATTCAT
** * * * * * * * *
68183 TTTACGGTTAGGCACTATAAACACATTGTTCACATTAGGATAAAGGATAATGATGAATTTCTTTT
1 TTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGTTATTGATGATTTTCTTTT
* *
68248 GCATGGAAATCTTTTCTTTGCCTTATTTACCATAAAATCAAAGTTCATCCCTGAAATAAGGCAAG
66 GCATGGAAATCTTTTCTTTGCCTTATTTACCTTAAAATCAAAGTTCATCCCTTAAATAAGGCAAG
* * * * *
68313 CATCGATTCTCATAACAGTCTTCATTCTTTCCAAGATTGAGAACTAAAAACACATTCCCTTTATT
131 CATCGATTCTCGTAACAGTCTCCATTCTTTTCAAGATTGAGAACCAAAAACACATTCCCTTCATT
* * * *
68378 AGGATACATGATATTGATGCTATGGTGATGCAAATAAAGCTTTTCTTACCACCGTTTTTGATTGA
196 AGGATACATGACATTGATACTATGGTGACGCAAA-AAAGCTTTTCTTACCACCGTTTTTGATAGA
68443 ATCAAAGTTTTTGTCTCTTAAATAAGACAAACAGAAAGAGTCATACTAATCCCTATTTTTTCAAG
260 ATCAAAG--TTTGTCTCTTAAATAAGACAAACAG-AAGAGTCATACTAATCCCTATTTTTTCAAG
*
68508 ATTAGGCACCATAAACATAGTCTTCTCATAAGGATAAACGATATTGATGCTTTGGTTTTGCAAGA
322 ATTAGGCACCATAAACATAGTCTTCTCATAAGGATACACGATATTGATGCTTTGGTTTTGCAAGA
* * *
68573 AAAGCTTTTTTCCCACCAATTTTTGTAAAGTCTAACTTTGTGCCTCAATTGAGAGAAACATGGAT
387 AAGGCTTTTTTCCCACCAATTTTTGTAAAGTCTAACTTCGTGCCTCAATTGAGACAAACATGGAT
* *
68638 TCTAGTAAAGGCCTACATTCAT
452 TCTAGTAATGGCCTTCATTCAT
* * *
68660 TTGGTGATTAGGCATTATAAACACATTCTCCTCATTAGGATAAATGTTATTGGTGATTTTCTTTT
1 TTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGTTATTGATGATTTTCTTTT
* * * *
68725 GCATAGAAATCTTTTCTTGGCCCTATTTAACTTAAAATCAAAGTTCATCCCTTAAATAAGGCAAG
66 GCATGGAAATCTTTTCTTTGCCTTATTTACCTTAAAATCAAAGTTCATCCCTTAAATAAGGCAAG
* * * * * *
68790 CATTGATTCTTGTAACAGTCCCCATTCTTTTCAAGATTGGGAACCAAAAACACATTTCCTTCATG
131 CATCGATTCTCGTAACAGTCTCCATTCTTTTCAAGATTGAGAACCAAAAACACATTCCCTTCATT
* * *
68855 AGGATACATGACATTGATATTGTGGTGACACAAAAAAAGC-TTTCTTACCACCGTTTTTGATAGA
196 AGGATACATGACATTGATACTATGGTGACGC-AAAAAAGCTTTTCTTACCACCGTTTTTGATAGA
* * * * * *
68919 ATCAAAGTTTGTCTCTTAAATAAGAGAAACTAAAATAGTCGTACTAATCCCTGTTTTTTTCAGGA
260 ATCAAAGTTTGTCTCTTAAATAAGACAAAC-AGAAGAGTCATACTAATCCCT-ATTTTTTCAAGA
* * *
68984 TTAGGCACCACAAACGTAGTCTTCTCATAAGGATACACGATATTGATGCTTTGGTTTTGAAAGAA
323 TTAGGCACCATAAACATAGTCTTCTCATAAGGATACACGATATTGATGCTTTGGTTTTGCAAGAA
* * * * * * * *
69049 AGGCTTTCTTCCCTCCAATTTTTGTAATGTCTGACTTCGTGGCTCGAA-TGGGACAATCATTGAT
388 AGGCTTTTTTCCCACCAATTTTTGTAAAGTCTAACTTCGTGCCTC-AATTGAGACAAACATGGAT
** *
69113 TCTAGTAATGTTCTTCATCCAT
452 TCTAGTAATGGCCTTCATTCAT
* * * * *
69135 TTTGTGATTAGGCACTGTAAGCACATTCTCTTCATTAGGATAAATATTATTGACGATTTTCTTTT
1 TTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGTTATTGATGATTTTCTTTT
* * *
69200 GTATGGAAATCTTTTCTTTGCCCTATTCACCTTAAAATCAAAGTTCATCCCTTAAATAAGGCAAG
66 GCATGGAAATCTTTTCTTTGCCTTATTTACCTTAAAATCAAAGTTCATCCCTTAAATAAGGCAAG
* * * *
69265 CATCGATTCTTGTAATAGTCTCCATTCTTTTCAAGATTGGGAACCAAAAACACAATCCCTTCATT
131 CATCGATTCTCGTAACAGTCTCCATTCTTTTCAAGATTGAGAACCAAAAACACATTCCCTTCATT
* ** * **
69330 AGGATACATGGCATTGATGTTATGGTGACTCAAAAAAAGCTTTTCTTACCACTATTTTTGATAGA
196 AGGATACATGACATTGATACTATGGTGACGC-AAAAAAGCTTTTCTTACCACCGTTTTTGATAGA
* *
69395 ATCAAAGTTTGTCTCTTAAATAAGACAAACATGAAGAGCCATACTAATCCAC-ATTTTTTTCAAC
260 ATCAAAGTTTGTCTCTTAAATAAGACAAACA-GAAGAGTCATACTAATCC-CTA-TTTTTTCAAG
* * * *
69459 ATTAGGCA-TATTAAGCATAGTCTTCTCATAAAGATACATGATATTGATGCTTTGGTTTTGCAAG
322 ATTAGGCACCA-TAAACATAGTCTTCTCATAAGGATACACGATATTGATGCTTTGGTTTTGCAAG
* ** * * *
69523 AAAGGCTTTTTTCCCACCAATTTTTATAAAAGTCTAACTTCGTATCTTAAATGAGACAAATATGG
386 AAAGGCTTTTTTCCCACCAATTTTTGT-AAAGTCTAACTTCGTGCCTCAATTGAGACAAACATGG
* *
69588 ATTCTGGTAAGGGCCTTCATTCAT
450 ATTCTAGTAATGGCCTTCATTCAT
* * * *
69612 GTTGTGATTAGGGACTATAAACACCTTCTCCTAATTAGGATAAATGTTATTGATGATTTTCTTTT
1 TTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGTTATTGATGATTTTCTTTT
* * *
69677 GAATGGAAATCTTTTGTTTGCCTTATTTACCTTTAAATCAAAGTTCATCCCTTGAAA-AAGGCAA
66 GCATGGAAATCTTTTCTTTGCCTTATTTACCTTAAAATCAAAGTTCATCCCTT-AAATAAGGCAA
* ***
69741 GCATCGATTCTCGTAACAGTCTCCATTCTTTTCAAGATT-AGGAACCAAAATCACATTCCAAGCA
130 GCATCGATTCTCGTAACAGTCTCCATTCTTTTCAAGATTGA-GAACCAAAAACACATTCCCTTCA
* * * *
69805 TGAGGATACATGACATT-AGTACTTTGGTGACGCAGAAAGAGCTTTTCTTACCACCATTTTTGAT
194 TTAGGATACATGACATTGA-TACTATGGTGACGCA-AAAAAGCTTTTCTTACCACCGTTTTTGAT
* * * *
69869 AGAATCAAAGTTTGTCTCTTAAATAAGAGAAACTATAATAGTCATACATTAA-CCCTATTCTTTA
257 AGAATCAAAGTTTGTCTCTTAAATAAGACAAAC-AGAAGAGTCATAC--TAATCCCTATT-TTTT
* * * * * * *
69933 CAGGATTAGGCACCAAAAACGTAGTTTTCTCATAAGGATACATGATTTTGATGCTTTGGTTTTGA
318 CAAGATTAGGCACCATAAACATAGTCTTCTCATAAGGATACACGATATTGATGCTTTGGTTTTGC
* * * * *
69998 AACAAAGGCTTTCTTCCCTCCAATTATTGTAAAG--T--C-T--TGACT--A-T-------A-AT
383 AAGAAAGGCTTTTTTCCCACCAATTTTTGTAAAGTCTAACTTCGTGCCTCAATTGAGACAAACAT
* * * * *
70045 -GA-TCT-TTACT--CATT-TTGTGA-
448 GGATTCTAGTAATGGCCTTCAT-TCAT
* * * * * ** * * ** *
70065 TTAG-GCACTA--TA-AACAAATTC-TCCTCAT--TAGGAATAAATGTTATTGATGATTTTCTTT
1 TTTGTG-ATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGTTATTGATGATTTTC-TT
* * * *
70123 TTGTAAGGAAATATTTTCTTTGCCCTATTTACCTTAAAATCAAAGTTCATCCCTTAAATAAGGCA
64 TTGCATGGAAATCTTTTCTTTGCCTTATTTACCTTAAAATCAAAGTTCATCCCTTAAATAAGGCA
* * * * *
70188 AGCATCGATTCTCATAACAGTCTTCATTCTTTCCAAGATTGAGAACTAAAAACACATTCCCTTTA
129 AGCATCGATTCTCGTAACAGTCTCCATTCTTTTCAAGATTGAGAACCAAAAACACATTCCCTTCA
* * * *
70253 TTAGGATACATGATATTGATGCTATGGTGATGCAAATAAAGCTTTTCTTACCACCGTTTTTGATT
194 TTAGGATACATGACATTGATACTATGGTGACGCAAA-AAAGCTTTTCTTACCACCGTTTTTGATA
* * *
70318 GAATCAAAGTTTGTCTCTTAAATAAGACAAACAGAAAAAGTCAAACTAATCCCTATATTTTCAAG
258 GAATCAAAGTTTGTCTCTTAAATAAGACAAACAG-AAGAGTCATACTAATCCCTATTTTTTCAAG
*
70383 ATTAGGCACCATAAACATAGTCTTCTCATAAGGATAAACGATATTGATGCTTTGGTTTTGCAAGA
322 ATTAGGCACCATAAACATAGTCTTCTCATAAGGATACACGATATTGATGCTTTGGTTTTGCAAGA
* * * *
70448 AAAGCTTTTTTCCCACCAATTTTTGTAAAGTCTAACTTTGTGCCTCAATTAAGAGAAACATGGAT
387 AAGGCTTTTTTCCCACCAATTTTTGTAAAGTCTAACTTCGTGCCTCAATTGAGACAAACATGGAT
* *
70513 TCTAGTAAAGGCCTACATTCAT
452 TCTAGTAATGGCCTTCATTCAT
* * *
70535 TTGGTGATTAGGCATTATAAACACATTCTCCTCATTAGGATAAATGTTATTGGTGATTTTCTTTT
1 TTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGTTATTGATGATTTTCTTTT
* * * *
70600 GCATAGAAATCTTTTCTTGGCCCTATTTAACTTAAAATCAAAGTTCATCCCTTAAATAAGGCAAG
66 GCATGGAAATCTTTTCTTTGCCTTATTTACCTTAAAATCAAAGTTCATCCCTTAAATAAGGCAAG
* *
70665 CATCGATTCTCGTAACAGTCCCCATTCTTTTCAAGATTGGGAACCAAAAACATCATT
131 CATCGATTCTCGTAACAGTCTCCATTCTTTTCAAGATTGAGAACCAAAAACA-CATT
70722 TTTGATAGAA
Statistics
Matches: 2147, Mismatches: 315, Indels: 144
0.82 0.12 0.06
Matches are distributed among these distances:
446 92 0.04
447 36 0.02
448 204 0.10
449 7 0.00
450 6 0.00
451 2 0.00
452 1 0.00
453 10 0.00
454 5 0.00
455 1 0.00
456 3 0.00
457 3 0.00
458 2 0.00
459 2 0.00
460 1 0.00
463 1 0.00
464 2 0.00
465 2 0.00
466 22 0.01
467 157 0.07
468 28 0.01
469 35 0.02
470 11 0.01
471 29 0.01
472 2 0.00
473 6 0.00
474 45 0.02
475 464 0.22
476 288 0.13
477 585 0.27
478 91 0.04
479 4 0.00
ACGTcount: A:0.32, C:0.18, G:0.15, T:0.35
Consensus pattern (473 bp):
TTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGTTATTGATGATTTTCTTTT
GCATGGAAATCTTTTCTTTGCCTTATTTACCTTAAAATCAAAGTTCATCCCTTAAATAAGGCAAG
CATCGATTCTCGTAACAGTCTCCATTCTTTTCAAGATTGAGAACCAAAAACACATTCCCTTCATT
AGGATACATGACATTGATACTATGGTGACGCAAAAAAGCTTTTCTTACCACCGTTTTTGATAGAA
TCAAAGTTTGTCTCTTAAATAAGACAAACAGAAGAGTCATACTAATCCCTATTTTTTCAAGATTA
GGCACCATAAACATAGTCTTCTCATAAGGATACACGATATTGATGCTTTGGTTTTGCAAGAAAGG
CTTTTTTCCCACCAATTTTTGTAAAGTCTAACTTCGTGCCTCAATTGAGACAAACATGGATTCTA
GTAATGGCCTTCATTCAT
Found at i:69590 original size:952 final size:945
Alignment explanation
Indices: 67771--70722 Score: 4029
Period size: 952 Copynumber: 3.1 Consensus size: 945
67761 GACAATGATT
* * * * *
67771 ATTTTCTTTTGCATGGAAATCTTTTCTTTGCCTTATTTACCTTATAATCAAAGTTCATCCCTTAA
1 ATTTTCTTTTGCATAGAAATCTTTTCTTGGCCCTATTTAACTTAAAATCAAAGTTCATCCCTTAA
* * *
67836 ATAAGGCAAGCATCGATTCTCGTAACAATCTCCATTCTTTTCAAGATTAGGAACCAAAAACATAT
66 ATAAGGCAAGCATCGATTCTCGTAACAGTCCCCATTCTTTTCAAGATTAGGAACCAAAAACACAT
* * * * * * * **
67901 TCCCGTCATTA-GAGACAAGACATTGATTCTTTGGTGACGC-AAAAAAGCATGTCTTACCATTGT
131 TTCCATCATGAGGATACATGACATTGA-TATTTGGTGACGCAAAAAAAGCATTTCTTACCACCGT
* * * * * *
67964 TTTTTATAGAATCAAAGTTTGACTCTTAAATAAGACAAAC-ATGA-AG-AGT-C--ATCCGTATT
195 TTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGAGAAACTATAATAGTCGTACTAATCCCTATT
* * * *
68023 ATTTTCATGATTAGGCACCATAAACATAGTCTTCTCATATGGATACAAGATATTGATGCTTTGGT
260 ATTTTCAGGATTAGGCACCAAAAACGTAGTCTTCTCATAAGGATACAAGATATTGATGCTTTGGT
* * * * *
68088 TTCGCAAGAAAAGCATT-TTCCCACCAATTTTTGTAAAGCCTGACTTCGTGCCTCAATTGAGG-C
325 TTTGAAAGAAAGGCTTTCTTCCCTCCAATTTTTGT-AAG-CTGACTTCGTG-CTCAA-TG-GGAC
* * * ** ** * * *
68151 AAACATGGATTCTTGTAATGCCCTTCATTCATTTTACGGTTAGGCACTATAAACACATTGT-TCA
385 AATCATTGATTCTAGTAATGTTCTTCA-TCATTTTGTGATTAGGCACTATAAACACATTCTCT-T
* * * * *
68215 CATTAGGATAAAGGA-TAATGATGAATTTCTTTTGCATGGAAATCTTTTCTTTGCCTTATTTACC
448 CATTAGGATAAA-TATTATTGATGATTTTCTTTTGTATGGAAATCTTTTCTTTGCCCTATTTACC
* *
68279 ATAAAATCAAAGTTCATCCCTGAAATAAGGCAAGCATCGATTCTCATAACAGTCTTCATTCTTTC
512 TTAAAATCAAAGTTCATCCCTTAAATAAGGCAAGCATCGATTCTCATAACAGTCTTCATTCTTTC
68344 CAAGATTGAGAACTAAAAACACATTCCCTTTATTAGGATACATGATATTGATGCTATGGTGATGC
577 CAAGATTGAGAACTAAAAACACATTCCCTTTATTAGGATACATGATATTGATGCTATGGTGATGC
68409 AAATAAAGCTTTTCTTACCACCGTTTTTGATTGAATCAAAGTTTTTGTCTCTTAAATAAGACAAA
642 AAATAAAGCTTTTCTTACCACCGTTTTTGATTGAATCAAAG--TTTGTCTCTTAAATAAGACAAA
68474 CAGAAAGAGTCATACTAATCCCTATTTTTTCAAGATTAGGCACCATAAACATAGTCTTCTCATAA
705 CAGAAAGAGTCATACTAATCCCTATTTTTTCAAGATTAGGCACCATAAACATAGTCTTCTCATAA
68539 GGATAAACGATATTGATGCTTTGGTTTTGCAAGAAAAGCTTTTTTCCCACCAATTTTTGTAAAGT
770 GGATAAACGATATTGATGCTTTGGTTTTGCAAGAAAAGCTTTTTTCCCACCAATTTTTGTAAAGT
68604 CTAACTTTGTGCCTCAATTGAGAGAAACATGGATTCTAGTAAAGGCCTACATTCATTTGGTGATT
835 CTAACTTTGTGCCTCAATTGAGAGAAACATGGATTCTAGTAAAGGCCTACATTCATTTGGTGATT
68669 AGGCATTATAAACACATTCTCCTCATTAGGATAAATGTTATTGGTG
900 AGGCATTATAAACACATTCTCCTCATTAGGATAAATGTTATTGGTG
68715 ATTTTCTTTTGCATAGAAATCTTTTCTTGGCCCTATTTAACTTAAAATCAAAGTTCATCCCTTAA
1 ATTTTCTTTTGCATAGAAATCTTTTCTTGGCCCTATTTAACTTAAAATCAAAGTTCATCCCTTAA
* * *
68780 ATAAGGCAAGCATTGATTCTTGTAACAGTCCCCATTCTTTTCAAGATTGGGAACCAAAAACACAT
66 ATAAGGCAAGCATCGATTCTCGTAACAGTCCCCATTCTTTTCAAGATTAGGAACCAAAAACACAT
* *
68845 TTCCTTCATGAGGATACATGACATTGATATTGTGGTGACACAAAAAAAGC-TTTCTTACCACCGT
131 TTCCATCATGAGGATACATGACATTGATATT-TGGTGACGCAAAAAAAGCATTTCTTACCACCGT
* *
68909 TTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGAGAAACTAAAATAGTCGTACTAATCCCTGTT
195 TTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGAGAAACTATAATAGTCGTACTAATCCCTATT
* * *
68974 TTTTTCAGGATTAGGCACCACAAACGTAGTCTTCTCATAAGGATACACGATATTGATGCTTTGGT
260 ATTTTCAGGATTAGGCACCAAAAACGTAGTCTTCTCATAAGGATACAAGATATTGATGCTTTGGT
69039 TTTGAAAGAAAGGCTTTCTTCCCTCCAATTTTTGTAATGTCTGACTTCGTGGCTCGAATGGGACA
325 TTTGAAAGAAAGGCTTTCTTCCCTCCAATTTTTGTAA-G-CTGACTTCGT-GCTC-AATGGGACA
* *
69104 ATCATTGATTCTAGTAATGTTCTTCATCCATTTTGTGATTAGGCACTGTAAGCACATTCTCTTCA
386 ATCATTGATTCTAGTAATGTTCTTCAT-CATTTTGTGATTAGGCACTATAAACACATTCTCTTCA
* *
69169 TTAGGATAAATATTATTGACGATTTTCTTTTGTATGGAAATCTTTTCTTTGCCCTATTCACCTTA
450 TTAGGATAAATATTATTGATGATTTTCTTTTGTATGGAAATCTTTTCTTTGCCCTATTTACCTTA
** * * *
69234 AAATCAAAGTTCATCCCTTAAATAAGGCAAGCATCGATTCTTGTAATAGTCTCCATTCTTTTCAA
515 AAATCAAAGTTCATCCCTTAAATAAGGCAAGCATCGATTCTCATAACAGTCTTCATTCTTTCCAA
* * * * ** *
69299 GATTGGGAACCAAAAACACAATCCCTTCATTAGGATACATGGCATTGATGTTATGGTGACT-CAA
580 GATTGAGAACTAAAAACACATTCCCTTTATTAGGATACATGATATTGATGCTATGGTGA-TGCAA
* ** *
69363 AAAAAGCTTTTCTTACCACTATTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATG
644 ATAAAGCTTTTCTTACCACCGTTTTTGATTGAATCAAAGTTTGTCTCTTAAATAAGACAAACA-G
* * * *
69428 -AAGAGCCATACTAATCCAC-ATTTTTTTCAACATTAGGCA-TATTAAGCATAGTCTTCTCATAA
708 AAAGAGTCATACTAATCC-CTA-TTTTTTCAAGATTAGGCACCA-TAAACATAGTCTTCTCATAA
* * * * *
69490 AGATACATGATATTGATGCTTTGGTTTTGCAAGAAAGGCTTTTTTCCCACCAATTTTTATAAAAG
770 GGATAAACGATATTGATGCTTTGGTTTTGCAAGAAAAGCTTTTTTCCCACCAATTTTTGT-AAAG
* ** * * * * * * *
69555 TCTAACTTCGTATCTTAAATGAGACAAATATGGATTCTGGTAAGGGCCTTCATTCATGTT-GTGA
834 TCTAACTTTGTGCCTCAATTGAGAGAAACATGGATTCTAGTAAAGGCCTACATTCAT-TTGGTGA
* * * * *
69619 TTAGGGACTATAAACACCTTCTCCTAATTAGGATAAATGTTATTGATG
898 TTAGGCATTATAAACACATTCTCCTCATTAGGATAAATGTTATTGGTG
* * * * * * *
69667 ATTTTCTTTTGAATGGAAATCTTTTGTTTGCCTTATTTACCTTTAAATCAAAGTTCATCCCTTGA
1 ATTTTCTTTTGCATAGAAATCTTTTCTTGGCCCTATTTAACTTAAAATCAAAGTTCATCCCTT-A
* *
69732 AA-AAGGCAAGCATCGATTCTCGTAACAGTCTCCATTCTTTTCAAGATTAGGAACCAAAATCACA
65 AATAAGGCAAGCATCGATTCTCGTAACAGTCCCCATTCTTTTCAAGATTAGGAACCAAAAACACA
* * * *
69796 -TTCCAAGCATGAGGATACATGACATT-AGTACTTTGGTGACGCAGAAAGAGCTTTTCTTACCAC
130 TTTCC-ATCATGAGGATACATGACATTGA-TA-TTTGGTGACGCAAAAAAAGCATTTCTTACCAC
* *
69859 CATTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGAGAAACTATAATAGTCATACATTAA-CC
192 CGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGAGAAACTATAATAGTCGTAC--TAATCC
* * * * *
69923 CTATTCTTTACAGGATTAGGCACCAAAAACGTAGTTTTCTCATAAGGATACATGATTTTGATGCT
255 CTATTATTTTCAGGATTAGGCACCAAAAACGTAGTCTTCTCATAAGGATACAAGATATTGATGCT
* *
69988 TTGGTTTTGAAACAAAGGCTTTCTTCCCTCCAATTATTGTAA----A----GT-CT---T--GAC
320 TTGGTTTTGAAAGAAAGGCTTTCTTCCCTCCAATTTTTGTAAGCTGACTTCGTGCTCAATGGGAC
* * * * *
70039 --T-A-T-A----A-TGATCTT-TAC-TCATTTTGTGATTAGGCACTATAAACAAATTCTCCTCA
385 AATCATTGATTCTAGTAATGTTCTTCATCATTTTGTGATTAGGCACTATAAACACATTCTCTTCA
* * *
70092 TTAGGAATAAATGTTATTGATGATTTTCTTTTTGTAAGGAAATATTTTCTTTGCCCTATTTACCT
450 TTAGG-ATAAATATTATTGATGATTTTC-TTTTGTATGGAAATCTTTTCTTTGCCCTATTTACCT
70157 TAAAATCAAAGTTCATCCCTTAAATAAGGCAAGCATCGATTCTCATAACAGTCTTCATTCTTTCC
513 TAAAATCAAAGTTCATCCCTTAAATAAGGCAAGCATCGATTCTCATAACAGTCTTCATTCTTTCC
70222 AAGATTGAGAACTAAAAACACATTCCCTTTATTAGGATACATGATATTGATGCTATGGTGATGCA
578 AAGATTGAGAACTAAAAACACATTCCCTTTATTAGGATACATGATATTGATGCTATGGTGATGCA
70287 AATAAAGCTTTTCTTACCACCGTTTTTGATTGAATCAAAGTTTGTCTCTTAAATAAGACAAACAG
643 AATAAAGCTTTTCTTACCACCGTTTTTGATTGAATCAAAGTTTGTCTCTTAAATAAGACAAACAG
* * *
70352 AAAAAGTCAAACTAATCCCTATATTTTCAAGATTAGGCACCATAAACATAGTCTTCTCATAAGGA
708 AAAGAGTCATACTAATCCCTATTTTTTCAAGATTAGGCACCATAAACATAGTCTTCTCATAAGGA
70417 TAAACGATATTGATGCTTTGGTTTTGCAAGAAAAGCTTTTTTCCCACCAATTTTTGTAAAGTCTA
773 TAAACGATATTGATGCTTTGGTTTTGCAAGAAAAGCTTTTTTCCCACCAATTTTTGTAAAGTCTA
*
70482 ACTTTGTGCCTCAATTAAGAGAAACATGGATTCTAGTAAAGGCCTACATTCATTTGGTGATTAGG
838 ACTTTGTGCCTCAATTGAGAGAAACATGGATTCTAGTAAAGGCCTACATTCATTTGGTGATTAGG
70547 CATTATAAACACATTCTCCTCATTAGGATAAATGTTATTGGTG
903 CATTATAAACACATTCTCCTCATTAGGATAAATGTTATTGGTG
70590 ATTTTCTTTTGCATAGAAATCTTTTCTTGGCCCTATTTAACTTAAAATCAAAGTTCATCCCTTAA
1 ATTTTCTTTTGCATAGAAATCTTTTCTTGGCCCTATTTAACTTAAAATCAAAGTTCATCCCTTAA
*
70655 ATAAGGCAAGCATCGATTCTCGTAACAGTCCCCATTCTTTTCAAGATTGGGAACCAAAAACATCA
66 ATAAGGCAAGCATCGATTCTCGTAACAGTCCCCATTCTTTTCAAGATTAGGAACCAAAAACA-CA
70720 TTT
130 TTT
70723 TTGATAGAAT
Statistics
Matches: 1770, Mismatches: 197, Indels: 101
0.86 0.10 0.05
Matches are distributed among these distances:
922 5 0.00
923 248 0.14
924 116 0.07
925 229 0.13
926 5 0.00
927 1 0.00
931 1 0.00
932 1 0.00
933 1 0.00
934 1 0.00
936 3 0.00
938 1 0.00
942 2 0.00
944 132 0.07
945 69 0.04
946 10 0.01
947 2 0.00
948 3 0.00
949 1 0.00
950 42 0.02
951 183 0.10
952 534 0.30
953 77 0.04
954 100 0.06
955 3 0.00
ACGTcount: A:0.32, C:0.18, G:0.15, T:0.35
Consensus pattern (945 bp):
ATTTTCTTTTGCATAGAAATCTTTTCTTGGCCCTATTTAACTTAAAATCAAAGTTCATCCCTTAA
ATAAGGCAAGCATCGATTCTCGTAACAGTCCCCATTCTTTTCAAGATTAGGAACCAAAAACACAT
TTCCATCATGAGGATACATGACATTGATATTTGGTGACGCAAAAAAAGCATTTCTTACCACCGTT
TTTGATAGAATCAAAGTTTGTCTCTTAAATAAGAGAAACTATAATAGTCGTACTAATCCCTATTA
TTTTCAGGATTAGGCACCAAAAACGTAGTCTTCTCATAAGGATACAAGATATTGATGCTTTGGTT
TTGAAAGAAAGGCTTTCTTCCCTCCAATTTTTGTAAGCTGACTTCGTGCTCAATGGGACAATCAT
TGATTCTAGTAATGTTCTTCATCATTTTGTGATTAGGCACTATAAACACATTCTCTTCATTAGGA
TAAATATTATTGATGATTTTCTTTTGTATGGAAATCTTTTCTTTGCCCTATTTACCTTAAAATCA
AAGTTCATCCCTTAAATAAGGCAAGCATCGATTCTCATAACAGTCTTCATTCTTTCCAAGATTGA
GAACTAAAAACACATTCCCTTTATTAGGATACATGATATTGATGCTATGGTGATGCAAATAAAGC
TTTTCTTACCACCGTTTTTGATTGAATCAAAGTTTGTCTCTTAAATAAGACAAACAGAAAGAGTC
ATACTAATCCCTATTTTTTCAAGATTAGGCACCATAAACATAGTCTTCTCATAAGGATAAACGAT
ATTGATGCTTTGGTTTTGCAAGAAAAGCTTTTTTCCCACCAATTTTTGTAAAGTCTAACTTTGTG
CCTCAATTGAGAGAAACATGGATTCTAGTAAAGGCCTACATTCATTTGGTGATTAGGCATTATAA
ACACATTCTCCTCATTAGGATAAATGTTATTGGTG
Found at i:72243 original size:473 final size:474
Alignment explanation
Indices: 70720--72504 Score: 2466
Period size: 473 Copynumber: 3.8 Consensus size: 474
70710 AAAAACATCA
*
70720 TTTTTGATAGAATCAAAATTTGTCTCTTAAATAAGCCAAACATGAAGAGTCATACTAATCCCTAT
1 TTTTTGATAGAATCAAAATTTGTCTCTTAAATAAGACAAACATGAAGAGTCATACTAATCCCTAT
* * *
70785 TCTTTTCAAGATTAGGCACCATAAACGTAGTCTTTTCATAAGGATACACGATATTGATACTTTGG
66 TCTTTTCAAGATTAGGCACCATAAACATAGTCTTCTCATAAGGATACACAATATTGATACTTTGG
*
70850 TTTCACAAGAAAAGCTTTCTTCCCACCAATTCTTT-TAAAGTCTGACCTCGTGCCTCAAATGAGA
131 TTTCGCAAGAAAAGCTTTCTTCCCACCAATT-TTTGTAAAGTCTGACCTCGTGCCTCAAATGAGA
* * * *
70914 CAAACATTGATTCTAGAAATAATCTTCATTCATTTCGTGATTATGCACTATAAACATATTCTCCT
195 CAAACATTGATTCTAGTAATAATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCT
* * * * * *
70979 CATTATGATAAATGTTATTGATGATTTTCTTTTACTTTGGAAATCTTTTCTCTGCCCTACTTT-C
260 CATTAGGATAAATGTTATTGATGATTTTCTTTTGC-ATGAAAATCTTTTCTTTGCGCTA-TTTAC
** * *
71043 CTTAAAATCAATTTCATCCCTTAAATAAGGCAAGCTTTGATTCTCATAATAGTCTCCATTCTTTT
323 CTTAAAATCAAAGT-ATCCCTTAAATAAGGCAAGCATTGATTCTCGTAATAGTCTCCATTCTTTT
* * *
71108 CAAGATTAGGAACCAAAAACACATT-TCCTTCAATTGG-ATACAAGACATTGATGCTTTGGTGAC
387 CAAGATTGGGAACCAAAAACACATTCT-TTTC-ATTGGCATACATGACATTGATGCTTTGGTGAC
* * * *
71171 GCAAAAAAAAAGCTTTTCATGCTACCA
450 GC--AAAAAAAGCTTTTCTTTCCACCG
* * *
71198 TTTTTTATAGAAAT-AAAGTTTGTCTCTTAAAT-AGTACAAACATGAAGAGTCATACTAGTCCCT
1 TTTTTGATAG-AATCAAAATTTGTCTCTTAAATAAG-ACAAACATGAAGAGTCATACTAATCCCT
* * *
71261 ATTCTTTTTAAGATTAGGCACCATAAACATGGTCTTCTCATAAGGATACA-AGATATTGATGCTT
64 ATTCTTTTCAAGATTAGGCACCATAAACATAGTCTTCTCATAAGGATACACA-ATATTGATACTT
*
71325 TGGTTTCGCAAGAAAAGCTTTCTTCCCA-CAATTTTTGTAAAGTCTGACATCGTGCCTCAAATGA
128 TGGTTTCGCAAGAAAAGCTTTCTTCCCACCAATTTTTGTAAAGTCTGACCTCGTGCCTCAAATGA
* * * *
71389 GACAAACACTGATTCTAGTAATAATCTTCATTCATTTTTTGATTAGGCACTGTAAATACATTCTC
193 GACAAACATTGATTCTAGTAATAATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTC
* * *
71454 CTCATTGGGATAAATGTTATTGATGATTTTCTTTTGCATGAAAATCTTTTCTTTGTGCGATTTAC
258 CTCATTAGGATAAATGTTATTGATGATTTTCTTTTGCATGAAAATCTTTTCTTTGCGCTATTTAC
* * *
71519 CTTAAAATCAAAGTTCATCCCCTAAATAAGACAAGCATCGATTCTCGTAATAGTCTCCATTCTTT
323 CTTAAAATCAAAG-T-ATCCCTTAAATAAGGCAAGCATTGATTCTCGTAATAGTCTCCATTCTTT
* * * * *
71584 T-AACATTGGGAACCAAAAACACATTCCTTTCATTAGCATACATGACATTGATGTTTTAGTGACG
386 TCAAGATTGGGAACCAAAAACACATTCTTTTCATTGGCATACATGACATTGATGCTTTGGTGACG
71648 CAAAAAAAGCTTTTCTTTCCACCG
451 CAAAAAAAGCTTTTCTTTCCACCG
71672 TTTTTGATAGAATCAAAATTTGTCTCTTAAATAAGACAAACATGAAGAGTCATACTAATCCCTAT
1 TTTTTGATAGAATCAAAATTTGTCTCTTAAATAAGACAAACATGAAGAGTCATACTAATCCCTAT
* *
71737 TCTTTTCAAGATTAGGCATCATAAACATAGTCTTCTCATGAGGATACACAATATTGATACTTTGG
66 TCTTTTCAAGATTAGGCACCATAAACATAGTCTTCTCATAAGGATACACAATATTGATACTTTGG
*
71802 TTTCGCAAGAAAAGCTTTCTTCCCACCAATTTTTGTAAAGTCTGACCTCATGCCTCAAATGAGAC
131 TTTCGCAAGAAAAGCTTTCTTCCCACCAATTTTTGTAAAGTCTGACCTCGTGCCTCAAATGAGAC
*
71867 AAACATTGATTCTAGTAATAATCTGT-ATTTATTTTGTGATTAGGCACTATAAACACATTCTCCT
196 AAACATTGATTCTAGTAATAATCT-TCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCT
* * * * *
71931 CATTAGGATAAATGTTTTTGATGATTTTCTTTTGTATGCAAATATTTTCTTTGCGCTATTTACAT
260 CATTAGGATAAATGTTATTGATGATTTTCTTTTGCATGAAAATCTTTTCTTTGCGCTATTTACCT
* *
71996 TAAAATCAAAGT-TCCCTTAAAAAAGGCAGGCATTGATTCTCGTAATAGTCTCCATTCTTTTCAA
325 TAAAATCAAAGTATCCCTTAAATAAGGCAAGCATTGATTCTCGTAATAGTCTCCATTCTTTTCAA
* *
72060 GATTGGGAACCAAAAACACATTCTTTTCATTGGCATACATGACATTGATGCTTTGGTGATGCAAC
390 GATTGGGAACCAAAAACACATTCTTTTCATTGGCATACATGACATTGATGCTTTGGTGACGCAAA
* *
72125 AAAAGCTTTTCTTTTCACTG
455 AAAAGCTTTTCTTTCCACCG
* * * ** *
72145 TTTTTGATAGAATCAAAGTTTATCTCTTAAATAAGAGAAAC-TAGAATTGTCAAACTAATCCCTA
1 TTTTTGATAGAATCAAAATTTGTCTCTTAAATAAGACAAACAT-GAAGAGTCATACTAATCCCTA
* * * * * *
72209 TTCTTTTCAGGATTAGGCACCATAAACGTAGTCTTCCCATAAAGATACACGATATTGATGCTTTG
65 TTCTTTTCAAGATTAGGCACCATAAACATAGTCTTCTCATAAGGATACACAATATTGATACTTTG
* * * * * * * *
72274 GTTTTGAAAGAAAGGCTTTCTTCCCCCCCATTTTTGTAATGTCTGACTTCGTACCTCAAATGAGA
130 GTTTCGCAAGAAAAGCTTTCTTCCCACCAATTTTTGTAAAGTCTGACCTCGTGCCTCAAATGAGA
* * *
72339 CAAACATTGATTCTAGTAATGAT-TATCATTCATTTTGTAATTAGGCAAC-ATAAACATATTCTC
195 CAAACATTGATTCTAGTAATAATCT-TCATTCATTTTGTGATTAGGC-ACTATAAACACATTCTC
* * * * *
72402 CTCATCAGGATAATTGTTATTCATGATTTTCTTTTGCATGAAAATCTTTTCTTTGC-CTTGTTTG
258 CTCATTAGGATAAATGTTATTGATGATTTTCTTTTGCATGAAAATCTTTTCTTTGCGC-TATTTA
72466 CCTTAAAATCAAAGTTCATCCCTTAAATAAGGCAAGCAT
322 CCTTAAAATCAAAG-T-ATCCCTTAAATAAGGCAAGCAT
72505 CGATCACAAA
Statistics
Matches: 1161, Mismatches: 125, Indels: 44
0.87 0.09 0.03
Matches are distributed among these distances:
472 48 0.04
473 368 0.32
474 161 0.14
475 172 0.15
476 102 0.09
477 171 0.15
478 136 0.12
479 3 0.00
ACGTcount: A:0.32, C:0.19, G:0.13, T:0.36
Consensus pattern (474 bp):
TTTTTGATAGAATCAAAATTTGTCTCTTAAATAAGACAAACATGAAGAGTCATACTAATCCCTAT
TCTTTTCAAGATTAGGCACCATAAACATAGTCTTCTCATAAGGATACACAATATTGATACTTTGG
TTTCGCAAGAAAAGCTTTCTTCCCACCAATTTTTGTAAAGTCTGACCTCGTGCCTCAAATGAGAC
AAACATTGATTCTAGTAATAATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTC
ATTAGGATAAATGTTATTGATGATTTTCTTTTGCATGAAAATCTTTTCTTTGCGCTATTTACCTT
AAAATCAAAGTATCCCTTAAATAAGGCAAGCATTGATTCTCGTAATAGTCTCCATTCTTTTCAAG
ATTGGGAACCAAAAACACATTCTTTTCATTGGCATACATGACATTGATGCTTTGGTGACGCAAAA
AAAGCTTTTCTTTCCACCG
Found at i:73401 original size:475 final size:473
Alignment explanation
Indices: 72510--73506 Score: 1292
Period size: 475 Copynumber: 2.1 Consensus size: 473
72500 AGCATCGATC
* * * *
72510 ACAAAAAAAGCTTTTCTTACCACCGTTTTTGAAAGAATCAAAGTTTGTCTCTTAAATAAGAGAAA
1 ACAAAAAAAGCTTTTCTTACCACCGTTTTTGATAGAATCAAAGTTTGACACTTAAATAAGACAAA
* * * *
72575 CTAGAATAGTCATACTAATCCTTGTTCTTTTCAGGATTAGGCACCATAAACGTTGTCTTCTATAA
66 CTAGAAGAGTCATACTAATCCTTGTTCTTTTCAAGATTAGGCACCATAAACATAGTCTTCTATAA
* * * * * * **
72640 GGATATATGATATTAATGCTTTTGTTTTGAAAGAAAGTCTTTCTTCCCCCCAATTTTTATAAAGT
131 GGATACACGATACTAATGCTTTTGGTTTCAAAGAAAGGCTTTCTTCCCAACAATTTTTATAAAGT
* * * * *
72705 CTGACTTCGTGCGTCAAATGAGACAAATATTGATTCTAGTAATGATCTTCATTCATTTTGTGATT
196 CTAACTTCGTGCCTCAAATGAGACAAATATGGATTCTAGTAATGACCTTCATTCATTTTGGGATT
* * * * *
72770 AGCCACTATAAACACATTCTCCTCATTAGGATAAATGTTATTAATGATTTTCTTTTGCATGGAAA
261 AGCCACTATAAACACATTCTCCACATCAGGATAAAAGATACTAATGATTTTCTTTTGCATGGAAA
* * **
72835 TCTTTTCTTTGCCTTATTTACCTTAAAATTAAAGTTCATCCCTTAAATAAGGCAAGCATTGATTC
326 TATTTTCTTTGCCTTATTTACCTTAAAATCAAAGTTCATCCCTTAAATAAGGCAAGCAACGATTC
* *
72900 TCATAAAAGTGTCCATTCTTTTCAAGATTGGGAACCAAAAACACAATACC-TTCATTAGGATACA
391 TCATAAAAGTCTCCATTCTTTTCAAGATTAGGAACCAAAAACAC-ATACCTTTCATTAGGATACA
* * *
72964 TGACATTGATGCTATGGTG
455 AGACATTAATGCTATAGTG
* * *
72983 ATGCAAAAAAAGCTTTTCTTACCACCATTTTTGATAGAGTCAAAGTTTGACACTTAAGTAAGACA
1 A--CAAAAAAAGCTTTTCTTACCACCGTTTTTGATAGAATCAAAGTTTGACACTTAAATAAGACA
* *
73048 AA-TATGAAGAGTTATACTAATTGCTAT-TT-TTTTCAAGATTAGGCACCATAAACATAGTCTTC
64 AACTA-GAAGAGTCATACTAA-TCCT-TGTTCTTTTCAAGATTAGGCACCATAAACATAGTCTTC
* * *
73110 TCATAAGGATACACGTTACTGATGC-TTTGGTTTCACAAGAAAGGCTTTTTTCCCAACAATTTTT
126 T-ATAAGGATACACGATACTAATGCTTTTGGTTTCA-AAGAAAGGCTTTCTTCCCAACAATTTTT
* *
73174 GTGAAGTCTAACTTCGTGCCTCAAATGAGACAACAT-TGGATTCTAGTAATGACCTTCATTCATT
189 ATAAAGTCTAACTTCGTGCCTCAAATGAGACAA-ATATGGATTCTAGTAATGACCTTCATTCATT
* *
73238 TTGGGATTAGGCC-CTATAAATACATT-TCCACATCAGGATAAAAGATACTGATGATTTTCTTTT
253 TTGGGATTA-GCCACTATAAACACATTCTCCACATCAGGATAAAAGATACTAATGATTTTCTTTT
* * * * *
73301 GCATGTAAATATTTTCTTTGCCTTATTTGCCTTAAAATCGATGTTTA-CCTCTTAAATAAGGCAA
317 GCATGGAAATATTTTCTTTGCCTTATTTACCTTAAAATCAAAGTTCATCC-CTTAAATAAGGCAA
* * *
73365 GCAACGATTCTCATAACAGTCTCCATTCTTTTCAAGATTAGGAACCAAAAACACATTCCTTTCTT
381 GCAACGATTCTCATAAAAGTCTCCATTCTTTTCAAGATTAGGAACCAAAAACACATACCTTTCAT
* *
73430 TAGGATACAAGGCATTAATGCTTTAGTG
446 TAGGATACAAGACATTAATGCTATAGTG
*
73458 ACAAAAACAATGCTTTTCTTACCACCGTTTTTTATAGAATCAAAGTTTG
1 ACAAAAA-AA-GCTTTTCTTACCACCGTTTTTGATAGAATCAAAGTTTG
73507 TCTCTTGTTA
Statistics
Matches: 451, Mismatches: 60, Indels: 24
0.84 0.11 0.04
Matches are distributed among these distances:
473 7 0.02
474 10 0.02
475 306 0.68
476 122 0.27
477 6 0.01
ACGTcount: A:0.32, C:0.18, G:0.14, T:0.36
Consensus pattern (473 bp):
ACAAAAAAAGCTTTTCTTACCACCGTTTTTGATAGAATCAAAGTTTGACACTTAAATAAGACAAA
CTAGAAGAGTCATACTAATCCTTGTTCTTTTCAAGATTAGGCACCATAAACATAGTCTTCTATAA
GGATACACGATACTAATGCTTTTGGTTTCAAAGAAAGGCTTTCTTCCCAACAATTTTTATAAAGT
CTAACTTCGTGCCTCAAATGAGACAAATATGGATTCTAGTAATGACCTTCATTCATTTTGGGATT
AGCCACTATAAACACATTCTCCACATCAGGATAAAAGATACTAATGATTTTCTTTTGCATGGAAA
TATTTTCTTTGCCTTATTTACCTTAAAATCAAAGTTCATCCCTTAAATAAGGCAAGCAACGATTC
TCATAAAAGTCTCCATTCTTTTCAAGATTAGGAACCAAAAACACATACCTTTCATTAGGATACAA
GACATTAATGCTATAGTG
Found at i:73877 original size:20 final size:20
Alignment explanation
Indices: 73830--73885 Score: 60
Period size: 20 Copynumber: 2.9 Consensus size: 20
73820 TGTATCGATA
* **
73830 AATTGTATCGATATAT-GTT
1 AATTGTATCGATACATGGAC
*
73849 AATTATATCGATACATGGAC
1 AATTGTATCGATACATGGAC
*
73869 AATTGTATCAATACATG
1 AATTGTATCGATACATG
73886 AAACTGACAA
Statistics
Matches: 30, Mismatches: 6, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
19 14 0.47
20 16 0.53
ACGTcount: A:0.38, C:0.11, G:0.14, T:0.38
Consensus pattern (20 bp):
AATTGTATCGATACATGGAC
Found at i:73944 original size:20 final size:20
Alignment explanation
Indices: 73915--73963 Score: 64
Period size: 20 Copynumber: 2.5 Consensus size: 20
73905 TACCACTGTA
* *
73915 TGTATTGATACATGGT-ACAT
1 TGTATCGATACATGATGA-AT
73935 TGTATCGATACATGATGAAT
1 TGTATCGATACATGATGAAT
73955 TGTATCGAT
1 TGTATCGAT
73964 TCAATGTATC
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
20 25 0.96
21 1 0.04
ACGTcount: A:0.31, C:0.10, G:0.20, T:0.39
Consensus pattern (20 bp):
TGTATCGATACATGATGAAT
Found at i:80176 original size:13 final size:13
Alignment explanation
Indices: 80158--80184 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
80148 ACAATATTCC
80158 TTGTATCGATACA
1 TTGTATCGATACA
80171 TTGTATCGATACA
1 TTGTATCGATACA
80184 T
1 T
80185 GGGTTACTAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.30, C:0.15, G:0.15, T:0.41
Consensus pattern (13 bp):
TTGTATCGATACA
Found at i:81675 original size:33 final size:33
Alignment explanation
Indices: 81638--81704 Score: 91
Period size: 33 Copynumber: 2.0 Consensus size: 33
81628 CGAGAGTTGA
* *
81638 TCACTTCACTTTCACAATACAT-GAGTGAGCACT
1 TCACTTCACTCTCACAACACATGGA-TGAGCACT
*
81671 TCACTTCACTCTCACAACATATGGATGAGCACT
1 TCACTTCACTCTCACAACACATGGATGAGCACT
81704 T
1 T
81705 TGGTGCACTT
Statistics
Matches: 30, Mismatches: 3, Indels: 2
0.86 0.09 0.06
Matches are distributed among these distances:
33 28 0.93
34 2 0.07
ACGTcount: A:0.30, C:0.28, G:0.12, T:0.30
Consensus pattern (33 bp):
TCACTTCACTCTCACAACACATGGATGAGCACT
Found at i:82098 original size:21 final size:22
Alignment explanation
Indices: 82060--82102 Score: 61
Period size: 21 Copynumber: 2.0 Consensus size: 22
82050 TTTTAACCGA
* *
82060 TTATCAAGGGGGAGAAATTTTT
1 TTATCAAGAGGGAAAAATTTTT
82082 TTATCAA-AGGGAAAAATTTTT
1 TTATCAAGAGGGAAAAATTTTT
82103 AACCAGAGCC
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
21 12 0.63
22 7 0.37
ACGTcount: A:0.37, C:0.05, G:0.21, T:0.37
Consensus pattern (22 bp):
TTATCAAGAGGGAAAAATTTTT
Found at i:82694 original size:13 final size:13
Alignment explanation
Indices: 82676--82700 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
82666 CATTATGCTT
82676 TGTATTGATACAA
1 TGTATTGATACAA
82689 TGTATTGATACA
1 TGTATTGATACA
82701 TGTTCATTGC
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.08, G:0.16, T:0.40
Consensus pattern (13 bp):
TGTATTGATACAA
Found at i:84983 original size:474 final size:476
Alignment explanation
Indices: 84054--86292 Score: 2909
Period size: 474 Copynumber: 4.7 Consensus size: 476
84044 GGTGACACTA
* * * * *
84054 TCTCTTAAATAAGATAGACTTGAAGAGTCATACTAATCCTTATTCTTTTCAAGATTAGGCACCAT
1 TCTCTTAAATAAGACAAACATGAAGAGTCAAACTAATCCCTATTCTTTTCAAGATTAGGCACCAT
* * * *
84119 AAACATAGTCTTTTCATAAGGATACACCATATTGATGGTTTGGTTTCGTAAGAAAAGCTTTCTTC
66 AAACATAGTCTTCTCATAAGGATACACGATATTGATGCTTTGGTTTCGCAAGAAAAGCTTTCTTC
* * * *
84184 CCACCAATATTTGAAAAGTCTGACTTCGTGCCTCAAATGAGAAAAACATTGATTCTAGTAATAAT
131 CCACCAATTTTTGTAAAGTCTGACTTCGTGCCTCAAATGAGACAAACATTGATTCTAGTAATGAT
* * * * *
84249 CTTCATTAATTTTGTGACTAGGCACTATAAATACATTCTCCTCATTAGGACAAATGCTATTGATA
196 CTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGATATTGATA
* *
84314 ATTTTCTTTTACATGGAAATCTTTTCTTCGCAC-TATTTACCTTAAAATCAAAGTTCATCCCTTA
261 ATTTTCTTTTGCATGGAAATCTTTTCTTTGC-CTTATTTACCTTAAAATCAAAGTTCATCCCTTA
* * * * *
84378 AATAAGGCAAGCATCGATTCTCATAACAGTCTCGATTCTTTTCAAGATTGCGAGCCAAAAACACA
325 AAAAAGGCAAGCATCGATTCTCGTAACAGTCTCCATTCTTTTCAAGATTGGGAACCAAAAACACA
* * * *
84443 TTCCTTTCATTGGCA--CTTGACATTGATGCTTTGGGGACGCAAAAAAAGCTTTTCTTTCCACCG
390 TTCCCTTCATTAGCATGCATGACATTGATGCTATGGGGACGCAAAAAAAGCTTTTCTTTCCACCG
*
84506 TTTTTGATAGAATCAAAATTTG
455 TTTTTGATAGAATCAAAGTTTG
* * *
84528 TCTCTTAAATAAGACAAACATGAAGAGTCAAACCAATCCCTGTTCTTTTCAAAATTAGGCACCAT
1 TCTCTTAAATAAGACAAACATGAAGAGTCAAACTAATCCCTATTCTTTTCAAGATTAGGCACCAT
*
84593 AAACATAGTCTTCTCATAAGGATACACGATATTGATACTTTGGTTTCGCAAGAAAAGCTTTCTTC
66 AAACATAGTCTTCTCATAAGGATACACGATATTGATGCTTTGGTTTCGCAAGAAAAGCTTTCTTC
* * *
84658 CCACCAATTTTTGTAAAGTCTAACTTCATGCCTCAAATGAGACAAACATTAATTCTAGTAATGAT
131 CCACCAATTTTTGTAAAGTCTGACTTCGTGCCTCAAATGAGACAAACATTGATTCTAGTAATGAT
* *
84723 CTTCATTCATTTTGTGATTAAGG-ACTATAAACACATTCTCCTCATTCGGATAAATGTTATTGAT
196 CTTCATTCATTTTGTGATT-AGGCACTATAAACACATTCTCCTCATTAGGATAAATGATATTGAT
* *
84787 GATTTTCTTTTGAATGGAAATCTTTTCTTTGCGC-TATTTACCTTAAAATCAAAGTTCATCCCTT
260 AATTTTCTTTTGCATGGAAATCTTTTCTTTGC-CTTATTTACCTTAAAATCAAAGTTCATCCCTT
* * *
84851 AAAAAAGGCAAGCATTGATTCTCGTAATAGTCTCCATTCTTTTCAAGATTGGGAACGAAAAACAC
324 AAAAAAGGCAAGCATCGATTCTCGTAACAGTCTCCATTCTTTTCAAGATTGGGAACCAAAAACAC
** * * *
84916 ATTCGTTTCATTAGCATGCATGACATTGATGCTTTGGTGACGCGAAAAAAGCTTTT-TTTCC-CC
389 ATTCCCTTCATTAGCATGCATGACATTGATGCTATGGGGACGCAAAAAAAGCTTTTCTTTCCACC
*
84979 GTTTTTGATAGAATCAAAGTTTA
454 GTTTTTGATAGAATCAAAGTTTG
* * * * *
85002 TCTCTTAAATAAAAGAAAC-TAGAATAGTCAAACTAATCCGTATT-TCTTTCAAGATTAGGCCCC
1 TCTCTTAAATAAGACAAACAT-GAAGAGTCAAACTAATCCCTATTCT-TTTCAAGATTAGGCACC
* * * * * *
85065 ATAAACGTAGTCTTCTCAGAAGGATACATGATATTGATGCTTTGGTTTTGAAAGAAAGGCTTTCT
64 ATAAACATAGTCTTCTCATAAGGATACACGATATTGATGCTTTGGTTTCGCAAGAAAAGCTTTCT
*
85130 TCCC-CCTGATTTTTGTAAAGTCTGACTTCGTGCCTCAAATGAGACAAACATTGATTCTAGTAAT
129 TCCCACC-AATTTTTGTAAAGTCTGACTTCGTGCCTCAAATGAGACAAACATTGATTCTAGTAAT
* * * * *
85194 GATCTTCATTCATTTTGTGATTAGGCGCCATAAACCCATTCTCCTCATTATGAT-AATTATTATT
193 GATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGA-TATT
* *
85258 GATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCTTATTTACCTTAAAATCAAAGTTCATTCC
257 GATAATTTTCTTTTGCATGGAAATCTTTTCTTTGCCTTATTTACCTTAAAATCAAAGTTCATCCC
* * * * * *
85323 TTAAAAAAGGCAAGTATCGATTCTCGTAATAGTCTCCATTGTTTTCAAGATTAGGAACTAAAAGC
322 TTAAAAAAGGCAAGCATCGATTCTCGTAACAGTCTCCATTCTTTTCAAGATTGGGAACCAAAAAC
* *
85388 ACATTCCCTTCATTAGGATGCATGACATTGATGCTATGGGGATGCAAAAAAAGCTTTTCTTAT-C
387 ACATTCCCTTCATTAGCATGCATGACATTGATGCTATGGGGACGCAAAAAAAGCTTTTCTT-TCC
* *
85452 ACTGTTTTTGATAGAATGAAAGTTTG
451 ACCGTTTTTGATAGAATCAAAGTTTG
* * *
85478 TCTCTTAAATAAGACAAACATGAAAAGTCATACTAATCCCTATTCTTTTCAAGATCAGGCACCAT
1 TCTCTTAAATAAGACAAACATGAAGAGTCAAACTAATCCCTATTCTTTTCAAGATTAGGCACCAT
* * * * *
85543 AAACATAGTCTTCTCATAAGGAAACACGATTTTGATGCTTTGGTTTTGTAAGAAAAGCTTT-TTT
66 AAACATAGTCTTCTCATAAGGATACACGATATTGATGCTTTGGTTTCGCAAGAAAAGCTTTCTTC
* * * *
85607 CCACCAATTTTTGTAAAGT-TAAACTTCATGCCTCAAATGAGACAAACATGGATTCTAGTAATGG
131 CCACCAATTTTTGTAAAGTCT-GACTTCGTGCCTCAAATGAGACAAACATTGATTCTAGTAATGA
* * * * * * * * * *
85671 CCTTCATTCATTTTGTGATTAGGCACTTTAAA-AAAATCTTCACATTAGGGTAAAGGACAATGAT
195 TCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGATATTGAT
* * * *
85735 TATTTTCTTTTGCATGGAAATATTTTCTTTACCTTATTTACCTTATAATCAAAGTTCATCCCTTA
260 AATTTTCTTTTGCATGGAAATCTTTTCTTTGCCTTATTTACCTTAAAATCAAAGTTCATCCCTTA
* * * * *
85800 AATAAGGCAATCATCGATTCTCGTGACAATCTCCATTCTTTTCAGGATTGGGAACCAAAAACACA
325 AAAAAGGCAAGCATCGATTCTCGTAACAGTCTCCATTCTTTTCAAGATTGGGAACCAAAAACACA
* * * * * * **
85865 TTACCTTCACTAGGATGCATGATATTGATGCTATGGTGATGCAAAAAAAGCTTTTCTGACCACCG
390 TTCCCTTCATTAGCATGCATGACATTGATGCTATGGGGACGCAAAAAAAGCTTTTCTTTCCACCG
* *
85930 TTTTTGATAGAATGAGAGTTTG
455 TTTTTGATAGAATCAAAGTTTG
* * * * *
85952 TCTCTTAAATAAGATAAACATGAAGAGTCACACTAAT-CTTGATTCTTTTCAAGATTAGGAACAA
1 TCTCTTAAATAAGACAAACATGAAGAGTCAAACTAATCCCT-ATTCTTTTCAAGATTAGGCACCA
* * * *
86016 TAAACATAGTTTTCTCATAAGGATACATGATATTGATGCTTTGGCTTCGCAAGAAAAGCTTTTTT
65 TAAACATAGTCTTCTCATAAGGATACACGATATTGATGCTTTGGTTTCGCAAGAAAAGCTTTCTT
* * * *
86081 CCAACCAATTTTTGTAAAGTCTGACTTCGTGCCTCAATTGAGACAAACATGGATTCTAGAAAT-A
130 CCCACCAATTTTTGTAAAGTCTGACTTCGTGCCTCAAATGAGACAAACATTGATTCTAGTAATGA
* * *
86145 CCCTTCATTCATTTTGTGGTTAGGCACTATAAACACA-T-TCCTCACTTTAGGAT-AATGGATAA
195 -TCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCA--TTAGGATAAAT-GATAT
* * * *
86207 TGATAATTTTTTTTTTTTGCATGGAAATCTTTT-TGATGCCTTATTCACCTTAAAATCATAGTTC
256 TGATAA---TTTTCTTTTGCATGGAAATCTTTTCT-TTGCCTTATTTACCTTAAAATCAAAGTTC
86271 ATCCCTTAAAAAAGGCAAGCAT
317 ATCCCTTAAAAAAGGCAAGCAT
86293 ATCCCCTTCA
Statistics
Matches: 1547, Mismatches: 188, Indels: 55
0.86 0.11 0.03
Matches are distributed among these distances:
473 13 0.01
474 1091 0.71
475 188 0.12
476 186 0.12
477 2 0.00
478 1 0.00
479 66 0.04
ACGTcount: A:0.32, C:0.18, G:0.14, T:0.35
Consensus pattern (476 bp):
TCTCTTAAATAAGACAAACATGAAGAGTCAAACTAATCCCTATTCTTTTCAAGATTAGGCACCAT
AAACATAGTCTTCTCATAAGGATACACGATATTGATGCTTTGGTTTCGCAAGAAAAGCTTTCTTC
CCACCAATTTTTGTAAAGTCTGACTTCGTGCCTCAAATGAGACAAACATTGATTCTAGTAATGAT
CTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGATATTGATA
ATTTTCTTTTGCATGGAAATCTTTTCTTTGCCTTATTTACCTTAAAATCAAAGTTCATCCCTTAA
AAAAGGCAAGCATCGATTCTCGTAACAGTCTCCATTCTTTTCAAGATTGGGAACCAAAAACACAT
TCCCTTCATTAGCATGCATGACATTGATGCTATGGGGACGCAAAAAAAGCTTTTCTTTCCACCGT
TTTTGATAGAATCAAAGTTTG
Found at i:87428 original size:476 final size:476
Alignment explanation
Indices: 86298--88480 Score: 2865
Period size: 476 Copynumber: 4.6 Consensus size: 476
86288 AGCATATCCC
* * ** * **
86298 CTTCATTAGGATACACGACATTGATGTTTTATTGACGCAAAAAGAGCTTTTCTTACCACCGTTTT
1 CTTCATTAGGATACAAGACATTGATGCTTTGGTGACGCAAAAAAAGCTTTTCTTACCACTATTTT
* * * * * * *
86363 TGTTAGAATTAAAGTTTATCTCTTAAATAAGAGAAAC-TAGAATAGTCTTACTAATCCCTATTCG
66 TGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACAT-GAAGAGTCATACTAATCCCTATTCT
* **
86427 TTTCAGGATTAGGCACCATAAAGGTAGTC-T-TCTTAAGGATACATGATATTGATGCTTTGGTTT
130 TTTCAAGATTAGGCACCATAAACATAGTCTTCTCTTAAGGATACATGATATTGATGCTTTGGTTT
* * * * * * * *
86490 TGAAA-AAAAGGCTTTCATCCCCCCAATTTTTGTAAAGTCTTACTTTGTGCGTCAAATTAGGCAA
195 TGAAAGAAAA-GCTTTCTTCCCACTAATTTTTGTAAAGTCTAACTTCGTGCCTCAAATGAGACAA
* *
86554 ACATTGATTCTAGTAATGATATTCATTCATTTTGTGATTTAGGCACTATAAACACATCCTCCACA
259 ACATTGATTCTAGTAATGATCTTCATTCATTTTGTGA-TTAGGCACTATAAACACATTCTCCACA
* * * * *
86619 ATAGGACAAAGGATAATGATGATTTCCTTTTGCATGAAAATCTTTCGTTTGCCTTATTTACCTTA
323 TTAGGATAAAGGATAATGATGATTTTCTTTTGAATGAAAATCTTTCCTTTGCCTTATTTACCTTA
* * * * *
86684 AAATCAAAGTTCATCCCTTAAATAACGTAAGCATTGATTCTCGTAATAGTCTCTATTCTTTTCAA
388 AAATCAAAGTTCATCCCTTAAATAAGGCAAGCATCGATTCTCATAATAGTCTCCATTCTTTTCAA
*
86749 GATTG-GGAACCAAAAACATATTC-
453 GA-TGAGGAACCAAAAACACATTCT
* *
86772 C--C-TTAGGATACATGACA-TGATGCTATT-GTGATGCAAAAAAAGCTTTTCTTACCACTATTT
1 CTTCATTAGGATACAAGACATTGATGCT-TTGGTGACGCAAAAAAAGCTTTTCTTACCACTATTT
* *
86832 TTGATAGAATCAAAGTTTGTCTTTTAAATAAGACAAACATGGAGAGTCATACTAATCCCTATTCT
65 TTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAAGAGTCATACTAATCCCTATTCT
* *
86897 TTTCAAGATTAGGCACCATAAACATAGTATTCTCTTAAGGGTACATGATATTGATGCTTTGGTTT
130 TTTCAAGATTAGGCACCATAAACATAGTCTTCTCTTAAGGATACATGATATTGATGCTTTGGTTT
* * *
86962 AGCAAGAAAAGCTTTCTTCCCACTAATTTTTGTAAAGTCTAACTTCGTCCCTCAAATGAGACAAA
195 TGAAAGAAAAGCTTTCTTCCCACTAATTTTTGTAAAGTCTAACTTCGTGCCTCAAATGAGACAAA
* * *
87027 CATTAATTCTAGTAATGATCTTCATTTATTTTGCGATTAGGCACTATAAACACATTCTCCACATT
260 CATTGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCACATT
* * * *
87092 AGGATAAAGGATAACGATGATTTTCTTTTGAATGAAAATCATTT-GTTTGCCTTATTTGCCCTAA
325 AGGATAAAGGATAATGATGATTTTCTTTTGAATGAAAATC-TTTCCTTTGCCTTATTTACCTTAA
* * * * *
87156 AATCAAAGTTCATCCCCTAAATAAAGCAAGCATCGAATCTCATAACAGTCACCATTCTTTTCAAG
389 AATCAAAGTTCATCCCTTAAATAAGGCAAGCATCGATTCTCATAATAGTCTCCATTCTTTTCAAG
*
87221 ATGAGGAACCAAAAACACATTTT
454 ATGAGGAACCAAAAACACATTCT
* * *
87244 CTTCATCTA-GATACAAGACATTGATGATTTGGTGACACAAAAAAAGCTTTTCTTACCACCATTT
1 CTTCAT-TAGGATACAAGACATTGATGCTTTGGTGACGCAAAAAAAGCTTTTCTTACCACTATTT
*
87308 TTGATAGAATTC-AAGTTTGTCTCTTAAATAAGATAAACATGAAGAGTCATACTAATCCCTATTC
65 TTGATAGAA-TCAAAGTTTGTCTCTTAAATAAGACAAACATGAAGAGTCATACTAATCCCTATTC
* * * * *
87372 TTTTCAGGATTAGGCACCATAAACGTAGTCTTTTCATAAGGATACACGATATTGATGCTTTGGTT
129 TTTTCAAGATTAGGCACCATAAACATAGTCTTCTCTTAAGGATACATGATATTGATGCTTTGGTT
* *
87437 TTGAAAGAAAGGCTTTCTTCCC-CTCAATTTTTGTAAAGTCTGACTTCGTGCCTCAAATGAGACA
194 TTGAAAGAAAAGCTTTCTTCCCACT-AATTTTTGTAAAGTCTAACTTCGTGCCTCAAATGAGACA
* * *
87501 AACATTGATTCTAGTAATGATCTTCATTCACTTTGTGATTAGGCACTATAAACTCATTCTCCTCA
258 AACATTGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCACA
* * * * * * *
87566 TTAGGATAAATGTTATTGATGATTTTCATTTCTG--TGGACATCTTTCCATTGCCCTATTTACCT
323 TTAGGATAAAGGATAATGATGATTTTC-TTT-TGAATGAAAATCTTTCCTTTGCCTTATTTACCT
* *
87629 TAAAATCAAAGTTCATCCCTTAAATAAGGCAAGCATCGATTCTTATAATAGTCTCTATTCTTTTC
386 TAAAATCAAAGTTCATCCCTTAAATAAGGCAAGCATCGATTCTCATAATAGTCTCCATTCTTTTC
* * *
87694 AGGATTAGGAACCAAAAGCACATTCT
451 AAGATGAGGAACCAAAAACACATTCT
* * * * * * *
87720 CTTCAGTAGGATATAAGACATTGATGCTATGGTGATGCAAAACAAGCTTCTCTTACCACTGTTTT
1 CTTCATTAGGATACAAGACATTGATGCTTTGGTGACGCAAAAAAAGCTTTTCTTACCACTATTTT
*
87785 TGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAAGAGTCATACTAAACCCTATTCTT
66 TGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAAGAGTCATACTAATCCCTATTCTT
* * * ** *
87850 TTCACA-ATTAGGGACCGTAAACATAGTCTTCTCGTAAGGATACCCGATATTAATGCTTTGGTTT
131 TTCA-AGATTAGGCACCATAAACATAGTCTTCTCTTAAGGATACATGATATTGATGCTTTGGTTT
* * *
87914 TGAAAGAAAGGCTTTCTTCCCCCTAATTTTTGTAAAGTCTTACTTCGTGCCTCAAATGAGACAAA
195 TGAAAGAAAAGCTTTCTTCCCACTAATTTTTGTAAAGTCTAACTTCGTGCCTCAAATGAGACAAA
* * * *
87979 TATTGATTCTAGTAACGATCTTCATTCATTTTGTGATTAGGCACTACAAACACATTCTCCTCATT
260 CATTGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCACATT
* * * * * * * *
88044 AGGATAAAAGTTATTGATGATTTTCTTTTGCATTG-GAATCTTTTCTGTGCCTTATTTAGCTTAA
325 AGGATAAAGGATAATGATGATTTTCTTTTG-AATGAAAATCTTTCCTTTGCCTTATTTACCTTAA
* * * *
88108 AATCAAAGTTCATCCCTTAAATAAGGCAAGCATCGATTCCCGTAGTAGTCTCCATTTTTTTCAAG
389 AATCAAAGTTCATCCCTTAAATAAGGCAAGCATCGATTCTCATAATAGTCTCCATTCTTTTCAAG
* *
88173 ATTAGGAACCAAAAACACATTCC
454 ATGAGGAACCAAAAACACATTCT
* * * * * *
88196 CTTCATTAGGATATATGACGTTGATGCTTAGGTGACGCAGAAAAAGCTTTTCTTACCGCTATTTT
1 CTTCATTAGGATACAAGACATTGATGCTTTGGTGACGCAAAAAAAGCTTTTCTTACCACTATTTT
* * ** *
88261 TGATAGAATCAAAGTTTGTCTTTTAAATAAGATAAACCCGCAGAGTCATACTAATCCCTATTCTT
66 TGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAAGAGTCATACTAATCCCTATTCTT
* * * *
88326 TTCAAGATTAGGCACCATAAACATAGTATTCTCTTAGGGGTACATGATATTGATGCTTTGGTTTA
131 TTCAAGATTAGGCACCATAAACATAGTCTTCTCTTAAGGATACATGATATTGATGCTTTGGTTTT
* * *
88391 GAAAGAAAAGCTTTCTTCTCACCAATTTTTGTAAAGTCTAACTTCGTCCCTCAAATGAGACAAAC
196 GAAAGAAAAGCTTTCTTCCCACTAATTTTTGTAAAGTCTAACTTCGTGCCTCAAATGAGACAAAC
88456 ATTGATTCTAGTAATGATCTTCATT
261 ATTGATTCTAGTAATGATCTTCATT
88481 GATGTTAGGA
Statistics
Matches: 1501, Mismatches: 181, Indels: 52
0.87 0.10 0.03
Matches are distributed among these distances:
470 115 0.08
471 172 0.11
472 118 0.08
473 4 0.00
474 4 0.00
475 26 0.02
476 1051 0.70
477 9 0.01
478 2 0.00
ACGTcount: A:0.32, C:0.18, G:0.14, T:0.35
Consensus pattern (476 bp):
CTTCATTAGGATACAAGACATTGATGCTTTGGTGACGCAAAAAAAGCTTTTCTTACCACTATTTT
TGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAAGAGTCATACTAATCCCTATTCTT
TTCAAGATTAGGCACCATAAACATAGTCTTCTCTTAAGGATACATGATATTGATGCTTTGGTTTT
GAAAGAAAAGCTTTCTTCCCACTAATTTTTGTAAAGTCTAACTTCGTGCCTCAAATGAGACAAAC
ATTGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCACATTA
GGATAAAGGATAATGATGATTTTCTTTTGAATGAAAATCTTTCCTTTGCCTTATTTACCTTAAAA
TCAAAGTTCATCCCTTAAATAAGGCAAGCATCGATTCTCATAATAGTCTCCATTCTTTTCAAGAT
GAGGAACCAAAAACACATTCT
Found at i:88885 original size:13 final size:13
Alignment explanation
Indices: 88867--88892 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
88857 TACAGTAAGT
88867 ATGTATCGATACA
1 ATGTATCGATACA
88880 ATGTATCGATACA
1 ATGTATCGATACA
88893 CGAAAAAGAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:88890 original size:86 final size:86
Alignment explanation
Indices: 88792--89000 Score: 341
Period size: 86 Copynumber: 2.4 Consensus size: 86
88782 ATACATGTTG
* * *
88792 CAATGTATCGATACATGAAAATGATGTATTAATACATTTCTTGGCAGTAGCCAAACTTGTATCGA
1 CAATGTATCGATACACGAAAAAGATGTATCAATACATTTCTTGGCAGTAGCCAAACTTGTATCGA
*
88857 TACAGTAAGTATGTATCGATA
66 TACAGCAAGTATGTATCGATA
*
88878 CAATGTATCGATACACGAAAAAGATGTATCGATACATTTCTTGGCAGTAGCCAAACTTGTATCGA
1 CAATGTATCGATACACGAAAAAGATGTATCAATACATTTCTTGGCAGTAGCCAAACTTGTATCGA
88943 TACAGCAAGTATGTATCGATA
66 TACAGCAAGTATGTATCGATA
*
88964 CAATGTATCGATACAC-AAAAA-ATTGTATCGATACATT
1 CAATGTATCGATACACGAAAAAGA-TGTATCAATACATT
89001 GGCTTGTAAC
Statistics
Matches: 117, Mismatches: 5, Indels: 3
0.94 0.04 0.02
Matches are distributed among these distances:
84 1 0.01
85 19 0.16
86 97 0.83
ACGTcount: A:0.37, C:0.16, G:0.17, T:0.30
Consensus pattern (86 bp):
CAATGTATCGATACACGAAAAAGATGTATCAATACATTTCTTGGCAGTAGCCAAACTTGTATCGA
TACAGCAAGTATGTATCGATA
Found at i:88971 original size:13 final size:13
Alignment explanation
Indices: 88953--88978 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
88943 TACAGCAAGT
88953 ATGTATCGATACA
1 ATGTATCGATACA
88966 ATGTATCGATACA
1 ATGTATCGATACA
88979 CAAAAAATTG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:91225 original size:21 final size:21
Alignment explanation
Indices: 91192--91236 Score: 56
Period size: 21 Copynumber: 2.1 Consensus size: 21
91182 TTGCAAGTTG
*
91192 AAATAAAGAAGTTGGCTAATGA
1 AAATAAAGAAGTTAGCTAA-GA
*
91214 AAATAATG-AGTTAGCTAAGA
1 AAATAAAGAAGTTAGCTAAGA
91234 AAA
1 AAA
91237 ATGAAAACTT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
20 5 0.24
21 9 0.43
22 7 0.33
ACGTcount: A:0.53, C:0.04, G:0.20, T:0.22
Consensus pattern (21 bp):
AAATAAAGAAGTTAGCTAAGA
Found at i:93059 original size:15 final size:15
Alignment explanation
Indices: 93039--93077 Score: 60
Period size: 15 Copynumber: 2.6 Consensus size: 15
93029 TAAAAATGTC
*
93039 CAAAATGAGGAAGCT
1 CAAAATGAAGAAGCT
93054 CAAAATGAAGAAGCT
1 CAAAATGAAGAAGCT
*
93069 CCAAATGAA
1 CAAAATGAA
93078 ATTGATGAAC
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
15 22 1.00
ACGTcount: A:0.51, C:0.15, G:0.21, T:0.13
Consensus pattern (15 bp):
CAAAATGAAGAAGCT
Found at i:95139 original size:13 final size:13
Alignment explanation
Indices: 95121--95153 Score: 57
Period size: 13 Copynumber: 2.5 Consensus size: 13
95111 ACATTTTTCT
*
95121 TTGTATCGATATA
1 TTGTATCGATACA
95134 TTGTATCGATACA
1 TTGTATCGATACA
95147 TTGTATC
1 TTGTATC
95154 AATTCAGGGC
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
13 19 1.00
ACGTcount: A:0.27, C:0.12, G:0.15, T:0.45
Consensus pattern (13 bp):
TTGTATCGATACA
Found at i:95323 original size:20 final size:20
Alignment explanation
Indices: 95280--95325 Score: 58
Period size: 21 Copynumber: 2.2 Consensus size: 20
95270 AAATCTTTTG
95280 CAAAATACTTGTTTTTCACTT
1 CAAAATACTTGTTTTTCAC-T
*
95301 CAAATTACTTCGTTTTTCA-T
1 CAAAATACTT-GTTTTTCACT
95321 CAAAA
1 CAAAA
95326 CCAGCATCAA
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
20 5 0.23
21 9 0.41
22 8 0.36
ACGTcount: A:0.33, C:0.20, G:0.04, T:0.43
Consensus pattern (20 bp):
CAAAATACTTGTTTTTCACT
Found at i:102361 original size:18 final size:18
Alignment explanation
Indices: 102331--102377 Score: 51
Period size: 18 Copynumber: 2.6 Consensus size: 18
102321 ATCTTCTTCT
102331 CTCCTCT-TCCTATCATCC
1 CTCCTCTCT-CTATCATCC
* *
102349 CTCCTCTCTCTATTATCT
1 CTCCTCTCTCTATCATCC
*
102367 CTCCTATCTCT
1 CTCCTCTCTCT
102378 CCTCTTATCA
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
18 24 0.96
19 1 0.04
ACGTcount: A:0.11, C:0.45, G:0.00, T:0.45
Consensus pattern (18 bp):
CTCCTCTCTCTATCATCC
Found at i:102374 original size:9 final size:9
Alignment explanation
Indices: 102362--102422 Score: 65
Period size: 9 Copynumber: 7.1 Consensus size: 9
102352 CTCTCTCTAT
102362 TATCTCTCC
1 TATCTCTCC
102371 TATCTCTCC
1 TATCTCTCC
* *
102380 TCT-TAT-C
1 TATCTCTCC
*
102387 -ATCCCTCC
1 TATCTCTCC
*
102395 TATCTCTAC
1 TATCTCTCC
102404 TATCTCTCC
1 TATCTCTCC
102413 TATCTCTCC
1 TATCTCTCC
102422 T
1 T
102423 CCTATCATCC
Statistics
Matches: 41, Mismatches: 8, Indels: 6
0.75 0.15 0.11
Matches are distributed among these distances:
6 1 0.02
7 2 0.05
8 3 0.07
9 35 0.85
ACGTcount: A:0.13, C:0.43, G:0.00, T:0.44
Consensus pattern (9 bp):
TATCTCTCC
Found at i:102386 original size:12 final size:12
Alignment explanation
Indices: 102367--102443 Score: 62
Period size: 12 Copynumber: 6.9 Consensus size: 12
102357 TCTATTATCT
102367 CTCCTATCTCTC
1 CTCCTATCTCTC
*
102379 CTCTTATCATC-C
1 CTCCTATC-TCTC
102391 CTCCTA--TCT-
1 CTCCTATCTCTC
*
102400 CTACTA--TCT-
1 CTCCTATCTCTC
102409 CTCCTATCTCTC
1 CTCCTATCTCTC
102421 CTCCTATCATC-C
1 CTCCTATC-TCTC
102433 CTCCTATCTCT
1 CTCCTATCTCT
102444 TCTTTCTCTC
Statistics
Matches: 54, Mismatches: 4, Indels: 14
0.75 0.06 0.19
Matches are distributed among these distances:
9 15 0.28
11 5 0.09
12 30 0.56
13 4 0.07
ACGTcount: A:0.13, C:0.45, G:0.00, T:0.42
Consensus pattern (12 bp):
CTCCTATCTCTC
Found at i:102393 original size:42 final size:42
Alignment explanation
Indices: 102338--102453 Score: 187
Period size: 42 Copynumber: 2.8 Consensus size: 42
102328 TCTCTCCTCT
* *
102338 TCCTATCATCCCTCCTCTCTCTATTATCTCTCCTATCTCTCC
1 TCCTATCATCCCTCCTATCTCTACTATCTCTCCTATCTCTCC
*
102380 TCTTATCATCCCTCCTATCTCTACTATCTCTCCTATCTCTCC
1 TCCTATCATCCCTCCTATCTCTACTATCTCTCCTATCTCTCC
* *
102422 TCCTATCATCCCTCCTATCTCTTCTTTCTCTC
1 TCCTATCATCCCTCCTATCTCTACTATCTCTC
102454 TGAGGGCTAC
Statistics
Matches: 68, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
42 68 1.00
ACGTcount: A:0.12, C:0.44, G:0.00, T:0.44
Consensus pattern (42 bp):
TCCTATCATCCCTCCTATCTCTACTATCTCTCCTATCTCTCC
Found at i:102397 original size:24 final size:23
Alignment explanation
Indices: 102341--102447 Score: 92
Period size: 24 Copynumber: 5.0 Consensus size: 23
102331 CTCCTCTTCC
*
102341 TATCATCCCTCC--TCTCTCTAT
1 TATCATCCCTCCTATCTCTCTCT
102362 TATC-T--CTCCTATCTCTCCTCT
1 TATCATCCCTCCTATCTCT-CTCT
*
102383 TATCATCCCTCCTATCTCT-AC-
1 TATCATCCCTCCTATCTCTCTCT
*
102404 TATC-T--CTCCTATCTCTCCTCC
1 TATCATCCCTCCTATCTCT-CTCT
102425 TATCATCCCTCCTATCTCT-TCT
1 TATCATCCCTCCTATCTCTCTCT
102447 T
1 T
102448 TCTCTCTGAG
Statistics
Matches: 70, Mismatches: 4, Indels: 23
0.72 0.04 0.24
Matches are distributed among these distances:
18 15 0.21
20 8 0.11
21 19 0.27
22 6 0.09
24 22 0.31
ACGTcount: A:0.13, C:0.43, G:0.00, T:0.44
Consensus pattern (23 bp):
TATCATCCCTCCTATCTCTCTCT
Found at i:104800 original size:20 final size:20
Alignment explanation
Indices: 104754--104810 Score: 82
Period size: 19 Copynumber: 3.0 Consensus size: 20
104744 TTGTATCGAC
*
104754 ACAA-TGTATCGATACATGT
1 ACAATTGTATCGATACATGG
*
104773 TC-ATTGTATCGATACATGG
1 ACAATTGTATCGATACATGG
104792 ACAATTGTATCGATACATG
1 ACAATTGTATCGATACATG
104811 AAACTGGCAG
Statistics
Matches: 33, Mismatches: 3, Indels: 3
0.85 0.08 0.08
Matches are distributed among these distances:
18 1 0.03
19 16 0.48
20 16 0.48
ACGTcount: A:0.33, C:0.16, G:0.18, T:0.33
Consensus pattern (20 bp):
ACAATTGTATCGATACATGG
Found at i:104800 original size:52 final size:52
Alignment explanation
Indices: 104744--104924 Score: 141
Period size: 52 Copynumber: 3.2 Consensus size: 52
104734 ACATTATGCT
*
104744 TTGTATCGACACAATGTATCGATACATGTTCATTGTATCGATACATGGACAA
1 TTGTATCGATACAATGTATCGATACATGTTCATTGTATCGATACATGGACAA
* * *** *
104796 TTGTATCGATAC-ATGAAACTGGCAGTAACTACCCTACCACTAGTTTGTATCAATACATGGTAC-
1 TTGTATCGATACAATG-TA-T--C-G--A-TA-CAT-GTTC-A--TTGTATCGATACATGG-ACA
104859 A
52 A
* *
104860 TTGTATCGATACATTGTATCAATACATGTTCATTGTATCGATACATGGACAA
1 TTGTATCGATACAATGTATCGATACATGTTCATTGTATCGATACATGGACAA
104912 TTGTATCGATACA
1 TTGTATCGATACA
104925 TTATGGTTGA
Statistics
Matches: 98, Mismatches: 15, Indels: 32
0.68 0.10 0.22
Matches are distributed among these distances:
51 5 0.05
52 41 0.42
53 1 0.01
54 1 0.01
55 2 0.02
56 3 0.03
57 2 0.02
58 2 0.02
59 2 0.02
60 2 0.02
61 2 0.02
62 1 0.01
63 1 0.01
64 29 0.30
65 4 0.04
ACGTcount: A:0.33, C:0.18, G:0.16, T:0.33
Consensus pattern (52 bp):
TTGTATCGATACAATGTATCGATACATGTTCATTGTATCGATACATGGACAA
Found at i:104865 original size:20 final size:18
Alignment explanation
Indices: 104840--104925 Score: 56
Period size: 20 Copynumber: 4.8 Consensus size: 18
104830 TACCACTAGT
104840 TTGTATCAATACATGGTACA
1 TTGTATCAATACAT-G-ACA
*
104860 TTGTATCGATAC-----A
1 TTGTATCAATACATGACA
*
104873 TTGTATCAATACATGTTCA
1 TTGTATCAATACATG-ACA
*
104892 TTGTATCGATACATGGACAA
1 TTGTATCAATACAT-GAC-A
*
104912 TTGTATCGATACAT
1 TTGTATCAATACAT
104926 TATGGTTGAC
Statistics
Matches: 54, Mismatches: 4, Indels: 16
0.73 0.05 0.22
Matches are distributed among these distances:
13 12 0.22
19 15 0.28
20 27 0.50
ACGTcount: A:0.33, C:0.15, G:0.15, T:0.37
Consensus pattern (18 bp):
TTGTATCAATACATGACA
Found at i:104874 original size:13 final size:13
Alignment explanation
Indices: 104856--104886 Score: 53
Period size: 13 Copynumber: 2.4 Consensus size: 13
104846 CAATACATGG
*
104856 TACATTGTATCGA
1 TACATTGTATCAA
104869 TACATTGTATCAA
1 TACATTGTATCAA
104882 TACAT
1 TACAT
104887 GTTCATTGTA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 17 1.00
ACGTcount: A:0.35, C:0.16, G:0.10, T:0.39
Consensus pattern (13 bp):
TACATTGTATCAA
Found at i:104895 original size:19 final size:19
Alignment explanation
Indices: 104870--104925 Score: 76
Period size: 19 Copynumber: 2.9 Consensus size: 19
104860 TTGTATCGAT
* *
104870 ACATTGTATCAATACATGT
1 ACATTGTATCGATACATGG
*
104889 TCATTGTATCGATACATGG
1 ACATTGTATCGATACATGG
104908 ACAATTGTATCGATACAT
1 AC-ATTGTATCGATACAT
104926 TATGGTTGAC
Statistics
Matches: 32, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
19 17 0.53
20 15 0.47
ACGTcount: A:0.34, C:0.16, G:0.14, T:0.36
Consensus pattern (19 bp):
ACATTGTATCGATACATGG
Found at i:104899 original size:32 final size:33
Alignment explanation
Indices: 104840--104905 Score: 116
Period size: 32 Copynumber: 2.0 Consensus size: 33
104830 TACCACTAGT
104840 TTGTATCAATACATGGTACATTGTATCGATACA
1 TTGTATCAATACATGGTACATTGTATCGATACA
*
104873 TTGTATCAATACAT-GTTCATTGTATCGATACA
1 TTGTATCAATACATGGTACATTGTATCGATACA
104905 T
1 T
104906 GGACAATTGT
Statistics
Matches: 32, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
32 18 0.56
33 14 0.44
ACGTcount: A:0.32, C:0.15, G:0.14, T:0.39
Consensus pattern (33 bp):
TTGTATCAATACATGGTACATTGTATCGATACA
Found at i:105059 original size:20 final size:19
Alignment explanation
Indices: 105013--105069 Score: 69
Period size: 19 Copynumber: 2.9 Consensus size: 19
105003 TTGTATCGAT
* *
105013 ACATTGTATCAATACATGT
1 ACATTGTATCGATACATGG
*
105032 TCATTGTATCGATACATGG
1 ACATTGTATCGATACATGG
*
105051 ACAATTGTATCGTTACATG
1 AC-ATTGTATCGATACATG
105070 AAACTGGTAG
Statistics
Matches: 32, Mismatches: 5, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
19 17 0.53
20 15 0.47
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.37
Consensus pattern (19 bp):
ACATTGTATCGATACATGG
Found at i:105123 original size:20 final size:20
Alignment explanation
Indices: 105098--105150 Score: 72
Period size: 20 Copynumber: 2.6 Consensus size: 20
105088 CTAACATTGT
*
105098 TTGTATCGATACACGAT-ACA
1 TTGTATCGATACAAGATGA-A
*
105118 TTGTATTGATACAAGATGAA
1 TTGTATCGATACAAGATGAA
105138 TTGTATCGATACA
1 TTGTATCGATACA
105151 TTGCTTGTAA
Statistics
Matches: 29, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
20 28 0.97
21 1 0.03
ACGTcount: A:0.36, C:0.13, G:0.17, T:0.34
Consensus pattern (20 bp):
TTGTATCGATACAAGATGAA
Found at i:110983 original size:20 final size:20
Alignment explanation
Indices: 110958--110997 Score: 80
Period size: 20 Copynumber: 2.0 Consensus size: 20
110948 CATTGAACAT
110958 GTATCAATACATCTGGAAAA
1 GTATCAATACATCTGGAAAA
110978 GTATCAATACATCTGGAAAA
1 GTATCAATACATCTGGAAAA
110998 CCCAGATGTA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.45, C:0.15, G:0.15, T:0.25
Consensus pattern (20 bp):
GTATCAATACATCTGGAAAA
Found at i:113626 original size:19 final size:19
Alignment explanation
Indices: 113598--113654 Score: 69
Period size: 19 Copynumber: 2.9 Consensus size: 19
113588 TTGTATCGAT
* * *
113598 ACATTATATCAATACATGT
1 ACATTGTATCGATACATGG
*
113617 TCATTGTATCGATACATGG
1 ACATTGTATCGATACATGG
113636 ACAATTGTATCGATACATG
1 AC-ATTGTATCGATACATG
113655 AAACTGGCAG
Statistics
Matches: 32, Mismatches: 5, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
19 16 0.50
20 16 0.50
ACGTcount: A:0.35, C:0.16, G:0.14, T:0.35
Consensus pattern (19 bp):
ACATTGTATCGATACATGG
Found at i:113717 original size:13 final size:13
Alignment explanation
Indices: 113699--113731 Score: 66
Period size: 13 Copynumber: 2.5 Consensus size: 13
113689 AGATACATGG
113699 TACATTGTATCGA
1 TACATTGTATCGA
113712 TACATTGTATCGA
1 TACATTGTATCGA
113725 TACATTG
1 TACATTG
113732 CTTGTAATGG
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 20 1.00
ACGTcount: A:0.30, C:0.15, G:0.15, T:0.39
Consensus pattern (13 bp):
TACATTGTATCGA
Found at i:115517 original size:476 final size:476
Alignment explanation
Indices: 114575--122456 Score: 9813
Period size: 476 Copynumber: 16.7 Consensus size: 476
114565 GAAATGTGCC
* *
114575 TTAGGATACATGACGTTGATGCTTTGGTGATGCAAAAAAAAAGCTTTT-TTACCATCGTTTTTGA
1 TTAGGATACATGACATTGATGCTTTGGTGATGC--AAAAAAAGCTTTTCTTACCACCGTTTTTGA
* * * *
114639 TACAATCAAAGTTTGTCTCTTAAGTAAGACAAACATGAAGAGTCATCCTAATCCCTATTCTTTTC
64 TAGAATCAAAGTTTGTCTCTTAAATAAGACAAACAAGAAGAGTCATACTAATCCCTATTCTTTTC
* * * *
114704 ACGATTAGGCACCATAAACATAGTTTTCTCTTAAGGATACACGATATTAATGCTTTGGTTTTGAA
129 AAGATTAGGCACCATAAACATAGTCTTCTCATAAGGATACACGATATTGATGCTTTGGTTTTGAA
* *
114769 AGAAAGGCTTTCTTCCCCCCAATTTTTGTAAAGTTTTACTTCGTGCCTCAAATGAGACAAACATT
194 AGAAAAGCTTTCTTCCCCCCAATTTTTGTAAAGTCTTACTTCGTGCCTCAAATGAGACAAACATT
* * *
114834 GATTCTAGTAATGATCCTCATTCATTTTGTGATTAGGCACTACAAACACATTCTCTTCATTAGGA
259 GATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGA
* * * *
114899 TAAATGTTATTGATGATTTTCTTTTGCATTGAAAAACTTTTCTTTGCCCTTTTTACCTTAAAATC
324 TAAATATTATTGATGATTTTCTTTTGCA-TGGAAATCTTTTCTTTGCCCTATTTACCTTAAAATC
* * *
114964 AAAGTTCATCTCTTAAA-AATGGCAAGCATCGATTCTCGTAACAGTCTCCATTCATTTCAAAATT
388 AAAGTTCATCCCTTAAATAA-GGCAAGCATCGATTCTCGTAACAGTCTCCATTCTTTTCAAGATT
* *
115028 TGGAACCAAAAACACATTCCCTTCC
452 GGGAACCAAAAACACATTCCCTTCA
* * *
115053 TTAGGATACAT-ATATTGATTCTATGGTGATGCAAAAAAAGCTTTTCTTACCACCGTTTTTGATA
1 TTAGGATACATGACATTGATGCTTTGGTGATGCAAAAAAAGCTTTTCTTACCACCGTTTTTGATA
* *
115117 GAATCAAAGTTTGTCTCTTAAATATGACAAACAAGAAGAGTCATACTAATCCCTATTCTTTTCAC
66 GAATCAAAGTTTGTCTCTTAAATAAGACAAACAAGAAGAGTCATACTAATCCCTATTCTTTTCAA
* * * * ** *
115182 GATTAGGCACTATAAACATAGTATTCTCATAAAGATACACGATATTAACACTTTGGTTTTAAAAG
131 GATTAGGCACCATAAACATAGTCTTCTCATAAGGATACACGATATTGATGCTTTGGTTTTGAAAG
* * *
115247 AAAAGCTTTCTTCCCCCCAATTTTTGTAAAGTCTTATTTTGTGCCTCAAATTAGACAAACATTGA
196 AAAAGCTTTCTTCCCCCCAATTTTTGTAAAGTCTTACTTCGTGCCTCAAATGAGACAAACATTGA
* * *
115312 TTCTAGTAATGATCTTCATTCCTTTTGTGACTAGGCACTACAAACACATTCTCCTCATTAGGATA
261 TTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATA
*
115377 AATATTATTGATGATTTTCTTTTGCATTGGAAATCTTCTCTTTGCCCTATTTACCTTAAAATCAA
326 AATATTATTGATGATTTTCTTTTGCA-TGGAAATCTTTTCTTTGCCCTATTTACCTTAAAATCAA
* * * * *
115442 AGTTCATCCCTGAAATAAGGCTAGCATCGATTCTCATAACAGTCTCTATTCTTTTCAAGATTAGG
390 AGTTCATCCCTTAAATAAGGCAAGCATCGATTCTCGTAACAGTCTCCATTCTTTTCAAGATTGGG
*
115507 AACTAAAAACACATTCCCTTCA
455 AACCAAAAACACATTCCCTTCA
* * * * * * *
115529 TTAGGATATACGACATTTATACTTTGGTGACGCAAATAAAGCCTTTCTTACCACCGTTTTTGATA
1 TTAGGATACATGACATTGATGCTTTGGTGATGCAAAAAAAGCTTTTCTTACCACCGTTTTTGATA
* * * * *
115594 GAATCAAAGTTTATGC-CTTAAATAAGAGAAACTAGAATAGTCATACTAATCCCTGTTCTTTTCA
66 GAATCAAAGTTTGT-CTCTTAAATAAGACAAACAAGAAGAGTCATACTAATCCCTATTCTTTTCA
**
115658 AGATTAGGCACCATAAAGGTAGTCTTCTCATAAGGATACACGATATTGATGCTTTGGTTTTGAAA
130 AGATTAGGCACCATAAACATAGTCTTCTCATAAGGATACACGATATTGATGCTTTGGTTTTGAAA
* * * *
115723 GAAAGGCTTTCTT-CCCCCAA-TTTTGTAAAGT-TTGCTTCATGCCTTAAATGAGACAAACATTG
195 GAAAAGCTTTCTTCCCCCCAATTTTTGTAAAGTCTTACTTCGTGCCTCAAATGAGACAAACATTG
* * *
115785 ATTCAAGTAAAGATCTTCATTCATTTTGGGATTAGGCACTATAAACACATTC-CCTCATTAGGAT
260 ATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGAT
**
115849 AAAGGTTA-T--TGA-TTT-TTTTGCATGGAAATCTTTTCTTTGCCCTATTTACCTTAAAATCAA
325 AAATATTATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTACCTTAAAATCAA
* *
115909 AGTTCAT-CCTCAAATAAGGTGAA-CATCGA-TCTCGTAACAGTCTCCATTCTTTTCAAGATTGG
390 AGTTCATCCCTTAAATAAGG-CAAGCATCGATTCTCGTAACAGTCTCCATTCTTTTCAAGATTGG
* *
115971 GAACCAAAAAACACAATCCCTTAA
454 GAACC-AAAAACACATTCCCTTCA
* * * * *
115995 TTATGATACATGACGTTGATGCTTTGGTGATG-TAAAAAAGCTTTTC-TGCCGCCGTTTTTGATA
1 TTAGGATACATGACATTGATGCTTTGGTGATGCAAAAAAAGCTTTTCTTACCACCGTTTTTGATA
* ** * * ** * *
116058 AAATCAAAGTTTGTCTCTTAAATAAGGGAAACTAGAATAGTCATACTAATCCCCGTTCTTTGCAG
66 GAATCAAAGTTTGTCTCTTAAATAAGACAAACAAGAAGAGTCATACTAATCCCTATTCTTTTCAA
** * * *
116123 GATTAGGCACCATAAATGTAGTTTTCTCATAAGGATACAAGATATTAATGCTTTGGTTTTGAAAG
131 GATTAGGCACCATAAACATAGTCTTCTCATAAGGATACACGATATTGATGCTTTGGTTTTGAAAG
* * * ** ** *
116188 AAAGGTTTTATTCCCCCCAATTTTTGTAAAGTCGGACTTTATGCTTCAAATGAGACAAACATTGA
196 AAAAGCTTTCTTCCCCCCAATTTTTGTAAAGTCTTACTTCGTGCCTCAAATGAGACAAACATTGA
* * * * * *
116253 TGCTAGTAATTATCTTAATTCATTTTGTGATTAGGCACTATAAACATAATCTCCTCATTAGGCTA
261 TTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATA
*
116318 AATGTTATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTACCTTAAAATCAAA
326 AATATTATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTACCTTAAAATCAAA
* *
116383 GTTCATCTCTTAAATAAGGCAAGCATCGAATCTCGTAACAGTCTCCATTCTTTTCAAGATTGGGA
391 GTTCATCCCTTAAATAAGGCAAGCATCGATTCTCGTAACAGTCTCCATTCTTTTCAAGATTGGGA
*
116448 ACCAAAAACACATCCCCTTCA
456 ACCAAAAACACATTCCCTTCA
* * * *
116469 ATAGGATACATGACATTGATGCTATGGTGATGCAAAAAAAAG-ATTTCCTACCACCGTTTTTGAT
1 TTAGGATACATGACATTGATGCTTTGGTGATGC-AAAAAAAGCTTTTCTTACCACCGTTTTTGAT
* * ** * *
116533 AGAATCAATGTTTG-CATCCTAAATAAGACAAACTTGAATAGTCATAATAATCCCTATTCTTTTC
65 AGAATCAAAGTTTGTC-TCTTAAATAAGACAAACAAGAAGAGTCATACTAATCCCTATTCTTTTC
* * * * * * *
116597 ATA-ATTAGGCCCCATAAACATACTCTCCTGATAAGGATACACGTTATTGATGCTTTGGTTTCGC
129 A-AGATTAGGCACCATAAACATAGTCTTCTCATAAGGATACACGATATTGATGCTTTGGTTTTGA
* * * *
116661 AAGAAAAGCTATT-TTTCCACCAACTTTTGTAAAGTC-TAGCTTC--G--T---A--AGACAAAA
193 AAGAAAAGCT-TTCTTCCCCCCAATTTTTGTAAAGTCTTA-CTTCGTGCCTCAAATGAGACAAAC
* ** * * *
116715 ATGGATTCTAGTAATGCCCTTCATTCATTTTGTGATTAGGCACTGTAAACATATTCTCCTCCTTA
256 ATTGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTA
* * * *
116780 GGATAAATGA-TATTGATGATTTTATTTTCCAAGGAAATCTTTTCTTTGCCTTATTTACCTTAAA
321 GGATAAAT-ATTATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTACCTTAAA
* * * * *
116844 ATCAAAGTTCATCCCTTAAA-AAGGGTAAGTATCGATTCTTGTAATAGTCTCCATTCCTTTCAAG
385 ATCAAAGTTCATCCCTTAAATAA-GGCAAGCATCGATTCTCGTAACAGTCTCCATTCTTTTCAAG
*
116908 ATTGGGAACC-ATAACACATTCCCTTCA
449 ATTGGGAACCAAAAACACATTCCCTTCA
* * **
116935 TTTGGATACATGACATTGATGCTTTGGCGATGCAAAAAAAGCTTTTCTTACCACTATTTTTGATA
1 TTAGGATACATGACATTGATGCTTTGGTGATGCAAAAAAAGCTTTTCTTACCACCGTTTTTGATA
* ** * * * * * *
117000 GAATCGAAGTTTACCTCCTAAATAAGACAAACTAGAATAGTCATACTAATCTCAATTCTTGTC-A
66 GAATCAAAGTTTGTCTCTTAAATAAGACAAACAAGAAGAGTCATACTAATCCCTATTCTTTTCAA
* ** * *
117064 GTATTACGCACCATAAATGTAGTCTTCTTATAAGGATACACGATATTGATGCTTTTGTTTTGAAA
131 G-ATTAGGCACCATAAACATAGTCTTCTCATAAGGATACACGATATTGATGCTTTGGTTTTGAAA
* * ** *
117129 CAAAGGCTTTCTT-CCCCCAATTTTTGTAAAGTCCGACTTCGTGCCTTAAATGAGACAAACATTG
195 GAAAAGCTTTCTTCCCCCCAATTTTTGTAAAGTCTTACTTCGTGCCTCAAATGAGACAAACATTG
* * * * * *
117193 ATTTTAGTAATAATCTTCATTCATTTTGTAATTTGGCACTATAAACAAATTCTCCTCGTTAGGAT
260 ATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGAT
* * * *
117258 AAATGTTATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTACCTTATTTACCTTGAAATCAA
325 AAATATTATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTACCTTAAAATCAA
* * *
117323 AGTTCATCTCTTAAATAAGGCAAGCATCGATTCTCGTAACAGTCTCCATTCTTCTCAAGATT-AG
390 AGTTCATCCCTTAAATAAGGCAAGCATCGATTCTCGTAACAGTCTCCATTCTTTTCAAGATTGGG
*
117387 AATCCAAAAACACATTCCCTTCG
455 AA-CCAAAAACACATTCCCTTCA
* * * * **
117410 TTAGGATACATGACATTGATGCTTTGGTGACGCAAAAAGAGCTTTTCCTACCACAGCATTTGATA
1 TTAGGATACATGACATTGATGCTTTGGTGATGCAAAAAAAGCTTTTCTTACCACCGTTTTTGATA
* * * * * *
117475 AAATCGAAGTTTATCTCTTAAATAAGACAAACATGAAGAGTCGTACTAATCCCTATTTTTTTCAA
66 GAATCAAAGTTTGTCTCTTAAATAAGACAAACAAGAAGAGTCATACTAATCCCTATTCTTTTCAA
* * * *
117540 GATTAGGTACCATAAAAATAGTCTTCTCATAAGGATACACGATATTGATGCTTTGGTTTCGCAAG
131 GATTAGGCACCATAAACATAGTCTTCTCATAAGGATACACGATATTGATGCTTTGGTTTTGAAAG
* * * * * ** *
117605 AAAAGCTTTTTTCCCACCAATTTTTGTAAAGTCTGACTTCGAGCCTCAATTGAGATGAACATGGA
196 AAAAGCTTTCTTCCCCCCAATTTTTGTAAAGTCTTACTTCGTGCCTCAAATGAGACAAACATTGA
* ** * * * *
117670 TCCTAGTAATGCCCTTCATTCATTTTGTGATTGGGCACTATAAACTCATTCTTCACATTAGGATA
261 TTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATA
* * * * *
117735 AAGGA-TAATCATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCTTATTGACCTTAAAATCAA
326 AA-TATTATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTACCTTAAAATCAA
* * * *
117799 AGTTCATCCCTTAAATAAGGCAAGCATCGATTCTTGTAACAATCTCTATTCTTCTT-AAGATTAG
390 AGTTCATCCCTTAAATAAGGCAAGCATCGATTCTCGTAACAGTCTCCATTCTT-TTCAAGATTGG
*
117863 GAGCCAAAAACACATTCCCTTCA
454 GAACCAAAAACACATTCCCTTCA
* * *
117886 TTACGTTACAAGACATTGATGCTTTGGTGATGCAAAAAAAGCTTTTCTTACCACCGTTTTTGATA
1 TTAGGATACATGACATTGATGCTTTGGTGATGCAAAAAAAGCTTTTCTTACCACCGTTTTTGATA
* * * * *
117951 GAATCAACGTTTGTCTCTTAAATAAGACAAACATGAAGAGTCATACTAATTCCTATTCTTTTTAG
66 GAATCAAAGTTTGTCTCTTAAATAAGACAAACAAGAAGAGTCATACTAATCCCTATTCTTTTCAA
* * * *
118016 GATTAGGCACCATAAACATAGTATTCTCATAGGGATACACGATATTAATGCTTTGG-TTTCACAA
131 GATTAGGCACCATAAACATAGTCTTCTCATAAGGATACACGATATTGATGCTTTGGTTTTGA-AA
* * * *
118080 GAAAAGCTTTTTTCCCACCAATTTTTGTAAAGT-TTGACTTCGTGCCTCAATTGAGACAAACATG
195 GAAAAGCTTTCTTCCCCCCAATTTTTGTAAAGTCTT-ACTTCGTGCCTCAAATGAGACAAACATT
* ** * * *
118144 GATTCTTGTAATGCCCTTCTTTCATTTTGTGATTAGGCACTATAAACACATTCTTCACATTAGGA
259 GATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGA
* * * * * * * * * *
118209 AAAAGGA-TAATAATAATTTTCTTTTCCATGAAAATCTTTTGTTCT-CCTTATTTACTTTAAAAT
324 TAAA-TATTATTGATGATTTTCTTTTGCATGGAAATCTTTTCTT-TGCCCTATTTACCTTAAAAT
* * * * * *
118272 TAAAGTTCATCCCTTAAATAAGGCAAGCGTTGAATCTCGTAATAGTCTCCATTCTTTTCAATATT
387 CAAAGTTCATCCCTTAAATAAGGCAAGCATCGATTCTCGTAACAGTCTCCATTCTTTTCAAGATT
* * *
118337 GGGAAACAAAAACACATTCCATTTA
452 GGGAACCAAAAACACATTCCCTTCA
* *
118362 TTAGGATACATGACATTGATGCTATGGTGGTGCAAAAAAAGCTTTTCTTACCACCGTTTTTGATA
1 TTAGGATACATGACATTGATGCTTTGGTGATGCAAAAAAAGCTTTTCTTACCACCGTTTTTGATA
* * * * *
118427 CAATCAAAGTTTATCTCTTAAATAAGACAAACAGGGAGAGTCATACTAATCCCTATTCTCTTCAA
66 GAATCAAAGTTTGTCTCTTAAATAAGACAAACAAGAAGAGTCATACTAATCCCTATTCTTTTCAA
* * *
118492 GATTAGGCCCCAT-AACATAGTCTTCTCATAAGGATACATGATATTGATGCTTTGG-TTTCACAA
131 GATTAGGCACCATAAACATAGTCTTCTCATAAGGATACACGATATTGATGCTTTGGTTTTGA-AA
* * * * * *
118555 GAAAAGCTTAT-TTCCCACCAATTTTTGCAAAGTCTGACTTCGAGCCTCAATTGAGACAAACATG
195 GAAAAGCTT-TCTTCCCCCCAATTTTTGTAAAGTCTTACTTCGTGCCTCAAATGAGACAAACATT
** * * * * * *
118619 GATTCTAGTAATGCCCTTCATTCATTTTATGCTTAGGCACTATAAACTCATTCTTCACATTACGA
259 GATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGA
* * * *
118684 TAAAGGA-TAATGATGATTTTCTTTTGCATGGAAATCTTTTTTTTGCCTTATTTACCTTAAAATC
324 TAAA-TATTATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTACCTTAAAATC
* *
118748 AAAGTTCATCCCTTAAATAAGGCAAGCATCGATTCTCGTAATAGTCTCCATTCTTTTCAAGATTA
388 AAAGTTCATCCCTTAAATAAGGCAAGCATCGATTCTCGTAACAGTCTCCATTCTTTTCAAGATTG
*
118813 GAAACCAAAAACACATTCCCTTCA
453 GGAACCAAAAACACATTCCCTTCA
* * *
118837 TTAGGATACAAGACATTGATGCTTTGGTGACGCAAAAAAAGCTTTTCTTACCACCGTTTTTCATA
1 TTAGGATACATGACATTGATGCTTTGGTGATGCAAAAAAAGCTTTTCTTACCACCGTTTTTGATA
* *
118902 GAATCAAAGTTTATCTCTTAAATAAGACAAACATGAAGAGTCATACTAATCCCTATTCTTTTCAA
66 GAATCAAAGTTTGTCTCTTAAATAAGACAAACAAGAAGAGTCATACTAATCCCTATTCTTTTCAA
* * *
118967 GATTAGGCACCATAAACATAGTCTTCTCATAAGGATATATGATATTGATGCTTTGG-TTTCACAA
131 GATTAGGCACCATAAACATAGTCTTCTCATAAGGATACACGATATTGATGCTTTGGTTTTGA-AA
* * * * * * *
119031 GAAAAGGTTTTTTCCCACCAATTTTTGTAATGT-TTAACTTCGTGTCTCAATTGAGACAAACATG
195 GAAAAGCTTTCTTCCCCCCAATTTTTGTAAAGTCTT-ACTTCGTGCCTCAAATGAGACAAACATT
* ** * * *
119095 GATTCCAGTAATGGCCCT-ACTTCATTTTGTGATTAGGCACTATAAACACATTCTTCACATTAGG
259 GATTCTAGTAATGATCTTCA-TTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGG
* * * * * *
119159 ATAAAGGA-TAATGATAATTTTCTTTTGCATGAAAATCTTTT-GTTGCCTTATTTACCTTAAAAT
323 ATAAA-TATTATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTACCTTAAAAT
* * *
119222 CAAAGTTCATCCCTTAAATAAGGCAAGCATTGATTCGCGTAACAGTCTCCATTCTTTTCAATATT
387 CAAAGTTCATCCCTTAAATAAGGCAAGCATCGATTCTCGTAACAGTCTCCATTCTTTTCAAGATT
119287 GGGAACCAAAAACACATTCCCTTCA
452 GGGAACCAAAAACACATTCCCTTCA
** * * *
119312 TTAGGATATGTGACATTGATGCTATGGTCATGCAAAAAAAAGCTTTT-TTACCATCGTTTTTGAT
1 TTAGGATACATGACATTGATGCTTTGGTGATGC-AAAAAAAGCTTTTCTTACCACCGTTTTTGAT
* * * *
119376 ACAATCAAAGTTTGTCTCTTAAGTAAGACAAACATGAAGAGTCATCCTAATCCCTATTCTTTTCA
65 AGAATCAAAGTTTGTCTCTTAAATAAGACAAACAAGAAGAGTCATACTAATCCCTATTCTTTTCA
* * * *
119441 CGATTAGGCACCATAAACATAGTTTTCTCTTAAGGATACACGATATTAATGCTTTGGTTTTGAAA
130 AGATTAGGCACCATAAACATAGTCTTCTCATAAGGATACACGATATTGATGCTTTGGTTTTGAAA
* *
119506 GAAAGGCTTTCTTCCCCCCAATTTTTGTAAAGTTTTACTTCGTGCCTCAAATGAGACAAACATTG
195 GAAAAGCTTTCTTCCCCCCAATTTTTGTAAAGTCTTACTTCGTGCCTCAAATGAGACAAACATTG
* * * *
119571 ATTCTAGTAATGATCCTCATTCATTCTGTGATTAGGCACTACAAACACATTCTCTTCATTAGGAT
260 ATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGAT
* * *
119636 AAATGTTATTGATGATTTTCTTTTGCATTGAAAAACTTTTCTTTG--C------CCTT----T--
325 AAATATTATTGATGATTTTCTTTTGCA-TGGAAATCTTTTCTTTGCCCTATTTACCTTAAAATCA
* * * * *
119687 ---TT-A--CCTTAAAAAAGGCAAGCATTGATTCTCGTAATAGTCTCCATTCATTTCAATATTGG
389 AAGTTCATCCCTTAAATAAGGCAAGCATCGATTCTCGTAACAGTCTCCATTCTTTTCAAGATTGG
*
119746 GAACCAAAAACACATTCCCTTCC
454 GAACCAAAAACACATTCCCTTCA
* *
119769 TTAGGATACAT-ATATTGATGCTATGGTGATGCAAAAAAAGCTTTTCTTACCACCGTTTTTGATA
1 TTAGGATACATGACATTGATGCTTTGGTGATGCAAAAAAAGCTTTTCTTACCACCGTTTTTGATA
* *
119833 GAATCAAAGTTTGTCTCTTAAATATGACAAACAAGAAGAGTCATACTAATCCCTATTCTTTTCAC
66 GAATCAAAGTTTGTCTCTTAAATAAGACAAACAAGAAGAGTCATACTAATCCCTATTCTTTTCAA
* * * * ** *
119898 GATTAGGCACTATAAACATAGTATTCTCATAAAGATACACGATATTAACACTTTGGTTTTAAAAG
131 GATTAGGCACCATAAACATAGTCTTCTCATAAGGATACACGATATTGATGCTTTGGTTTTGAAAG
* * *
119963 AAAAGCTTTCTTCCCCCCAATTTTTGTAAAGTCTTATTTTGTGCCTCAAATTAGACAAACATTGA
196 AAAAGCTTTCTTCCCCCCAATTTTTGTAAAGTCTTACTTCGTGCCTCAAATGAGACAAACATTGA
* * *
120028 TTCTAGTAATGATCTTCATTCCTTTTGTGACTAGGCACTACAAACACATTCTCCTCATTAGGATA
261 TTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATA
*
120093 AATATTATTGATGATTTTCTTTTGCATTGGAAATCTTCTCTTTGCCCTATTTACCTTAAAATCAA
326 AATATTATTGATGATTTTCTTTTGCA-TGGAAATCTTTTCTTTGCCCTATTTACCTTAAAATCAA
* * * * *
120158 AGTTCATCCCTAAAATAAGGCTAGCATCGATTCTCATAACAGTCTCTATTCTTTTCAAGATTAGG
390 AGTTCATCCCTTAAATAAGGCAAGCATCGATTCTCGTAACAGTCTCCATTCTTTTCAAGATTGGG
*
120223 AACTAAAAACACATTCCCTTCA
455 AACCAAAAACACATTCCCTTCA
* * * * * * *
120245 TTAGGATATACGACATTTATACTTTGGTGACGCAAATAAAGCCTTTCTTACCACCGTTTTTGATA
1 TTAGGATACATGACATTGATGCTTTGGTGATGCAAAAAAAGCTTTTCTTACCACCGTTTTTGATA
* * * * *
120310 GAATCAAAGTTTATGC-CTTAAATAAGAGAAACTAGAATAGTCATACTAATCCCTGTTCTTTTCA
66 GAATCAAAGTTTGT-CTCTTAAATAAGACAAACAAGAAGAGTCATACTAATCCCTATTCTTTTCA
**
120374 AGATTAGGCACCATAAAGGTAGTCTTCTCATAAGGATACACGATATTGATGCTTTGGTTTTGAAA
130 AGATTAGGCACCATAAACATAGTCTTCTCATAAGGATACACGATATTGATGCTTTGGTTTTGAAA
* * * *
120439 GAAAGGCTTTCTTCCCCCCAATTTTTGTAAAGT-TTGCTTCATGCCTTAAATGAGACAAACATTG
195 GAAAAGCTTTCTTCCCCCCAATTTTTGTAAAGTCTTACTTCGTGCCTCAAATGAGACAAACATTG
* * * *
120503 ATTCAAGTAAAGATCTTCATTCATTTTGGGATTAGGCACTATAAACACATTCCCCTCATTAGGAT
260 ATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGAT
**
120568 AAAGGTTA-T--TGATTTT-TTTTGCATGGAAATCTTTTCTTTGCCCTATTTACCTTAAAATCAA
325 AAATATTATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTACCTTAAAATCAA
* *
120629 AGTTCATCCCTCAAATAAGGTGAA-CATCGA-TCTCGTAACAGTCTCCATTCTTTTCAAGATTGG
390 AGTTCATCCCTTAAATAAGG-CAAGCATCGATTCTCGTAACAGTCTCCATTCTTTTCAAGATTGG
* *
120692 GAACCAAAAAACACAATCCCTTAA
454 GAACC-AAAAACACATTCCCTTCA
* * * *
120716 TTATGATACATGACGTTGATGCTTTGGTGATGTAAAAAAAGCTTTTCTTACCGCCGTTTTTGATA
1 TTAGGATACATGACATTGATGCTTTGGTGATGCAAAAAAAGCTTTTCTTACCACCGTTTTTGATA
* ** * * ** *
120781 AAATCAAAGTTTGTCTCTTAAATAAGGGAAACTAGAATAGTCATACTAATCCCCGTTCTTTTCAG
66 GAATCAAAGTTTGTCTCTTAAATAAGACAAACAAGAAGAGTCATACTAATCCCTATTCTTTTCAA
** * * *
120846 GATTAGGCACCATAAATGTAGTTTTCTCATAAGGATACAAGATATTAATGCTTTGGTTTTGAAAG
131 GATTAGGCACCATAAACATAGTCTTCTCATAAGGATACACGATATTGATGCTTTGGTTTTGAAAG
* * * * ** * *
120911 AAAGGTTTTATTCCCCCCAATTTTTGTAAAGT-TGGACTTTATGCTTTAAATGAGACAAACATTG
196 AAAAGCTTTCTTCCCCCCAATTTTTGTAAAGTCT-TACTTCGTGCCTCAAATGAGACAAACATTG
* * * * * *
120975 ATGCTAGTAATTATCTTAATTCATTTTGTGATTAGGCACTATAAACATAATCTCCTCATTAGGCT
260 ATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGAT
*
121040 AAATGTTATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTACCTTAAAATCAA
325 AAATATTATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTACCTTAAAATCAA
* * *
121105 AGTTCATCTCTTAAATAAGGCAAGCATCGAATCTCGTAACAGTCTCCATTCTTTTCAAGATTAGG
390 AGTTCATCCCTTAAATAAGGCAAGCATCGATTCTCGTAACAGTCTCCATTCTTTTCAAGATTGGG
*
121170 AACCAAAAACACATCCCCTTCA
455 AACCAAAAACACATTCCCTTCA
* * * * **
121192 ATAGGATACATGACATTGATGCTATGGTGATGCAAAAAAAAGATTTCCTTACCACTTTTTTTGAT
1 TTAGGATACATGACATTGATGCTTTGGTGATGC-AAAAAAAGCTTTTCTTACCACCGTTTTTGAT
* * ** * *
121257 AGAATCAATGTTTG-CATCCTAAATAAGACAAACTTGAATAGTCATAATAATCCCTATTCTTTTC
65 AGAATCAAAGTTTGTC-TCTTAAATAAGACAAACAAGAAGAGTCATACTAATCCCTATTCTTTTC
* * * * * *
121321 ATA-ATTAGGCCCCATAAACATACTCTTCTGATAAGGATACACGTTATTGATGCTTTGGTTTCGC
129 A-AGATTAGGCACCATAAACATAGTCTTCTCATAAGGATACACGATATTGATGCTTTGGTTTTGA
* * * * *
121385 AAGAAAAGCTATT-TTTCCACCAACTTTTGTAAAGTC-TAGCTTCATGCCTCAAATGAGACAAAA
193 AAGAAAAGCT-TTCTTCCCCCCAATTTTTGTAAAGTCTTA-CTTCGTGCCTCAAATGAGACAAAC
* ** * *
121448 ATGGATTCTAGTAACAATCCCTTCATTCA-TTTGTGATTAGGCACGATAAACACATTCTCCTCCT
256 ATTGATTCTAGTAATGAT--CTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCAT
*
121512 TAGGATAAATGA-TATTGATGATTTTATTTTGCATGGAAATCTTTTCTTTGCCCTATTTACCTTA
319 TAGGATAAAT-ATTATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTACCTTA
* * * * * * *
121576 AAATTAAAGTTCATCGCTTTAATAGGGCAAGCATCAATTCTCGTAATAGTCTCCATTCCTTTCAA
383 AAATCAAAGTTCATCCCTTAAATAAGGCAAGCATCGATTCTCGTAACAGTCTCCATTCTTTTCAA
*
121641 GTTTGGGAACCAAAAACACATTCCCTTCA
448 GATTGGGAACCAAAAACACATTCCCTTCA
* * * * * *
121670 TGAGGATACATGGCATTGATGCTTCGGGGATGCAAAAAAAGCTTTTCCTACCACTGTTTTTGATA
1 TTAGGATACATGACATTGATGCTTTGGTGATGCAAAAAAAGCTTTTCTTACCACCGTTTTTGATA
* * * * * * * *
121735 GAATCAAAGTTTGTCTCCTAAATAAGACGAACTAGAACAGTCGTACTAATCCCTGTTCTTCTCAG
66 GAATCAAAGTTTGTCTCTTAAATAAGACAAACAAGAAGAGTCATACTAATCCCTATTCTTTTCAA
* * *
121800 GATTAGGCACCATAAACACAATCTTCTCATAAGGATACACGATATTGATGCTTTTGTTTTGAAAG
131 GATTAGGCACCATAAACATAGTCTTCTCATAAGGATACACGATATTGATGCTTTGGTTTTGAAAG
* * *
121865 -AAAGTCTTTCTT-CCCCTAATTTTTGTAAAGCCTGACTTCGTGCCTCAAATGAGACAAACATTG
196 AAAAG-CTTTCTTCCCCCCAATTTTTGTAAAGTCTTACTTCGTGCCTCAAATGAGACAAACATTG
* * *
121928 ATTCTAGTAATAATCTTCATTCATTTTGTAATTAAGCACTATAAACACATTCTCCTCATTAGGAT
260 ATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGAT
* *
121993 AAATGTTATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCTTATTTACCTTAAAATCAA
325 AAATATTATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTACCTTAAAATCAA
* * ** *
122058 AGTTCATCCCTTAAATAAGACAAGCATTGATTCTCGTAACAGT-TTTATTCTTTTCAAAATTGGG
390 AGTTCATCCCTTAAATAAGGCAAGCATCGATTCTCGTAACAGTCTCCATTCTTTTCAAGATTGGG
122122 AACCAAAAACACATTCCCTTCA
455 AACCAAAAACACATTCCCTTCA
* * ** * ** *
122144 TTTGGATACAAGACATTGATGCTTTGGTGACACAAAAAGAGCTTTTCTTACCATAGCTTTTGATA
1 TTAGGATACATGACATTGATGCTTTGGTGATGCAAAAAAAGCTTTTCTTACCACCGTTTTTGATA
*
122209 GAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAAGAGTCATACTAAT-CCTATT-TTTTCAA
66 GAATCAAAGTTTGTCTCTTAAATAAGACAAACAAGAAGAGTCATACTAATCCCTATTCTTTTCAA
* *
122272 GATTAGGCACCATACACATAGTCTTCTCATAAGGATACACGATATTGATGCTTTGG-TTTCACAA
131 GATTAGGCACCATAAACATAGTCTTCTCATAAGGATACACGATATTGATGCTTTGGTTTTGA-AA
* * ** * * * * *
122336 GAAAGGCTTTTTTTTCACCAATTTTTGTAAATTC-TAGCTTCGTGCCTCAAATAAGACAAAAATG
195 GAAAAGCTTTCTTCCCCCCAATTTTTGTAAAGTCTTA-CTTCGTGCCTCAAATGAGACAAACATT
** * *
122400 GATTCTAGTAACAATCTTCATTCA-TTTGTCATTAGGCACTGTAAACACATTCTCCTC
259 GATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTC
122457 CTTATATTAA
Statistics
Matches: 6474, Mismatches: 807, Indels: 252
0.86 0.11 0.03
Matches are distributed among these distances:
455 13 0.00
456 314 0.05
457 83 0.01
458 1 0.00
459 1 0.00
460 2 0.00
463 1 0.00
464 148 0.02
465 85 0.01
466 248 0.04
467 300 0.05
468 26 0.00
469 10 0.00
470 38 0.01
471 289 0.04
472 199 0.03
473 155 0.02
474 454 0.07
475 1230 0.19
476 1895 0.29
477 757 0.12
478 217 0.03
479 8 0.00
ACGTcount: A:0.32, C:0.19, G:0.14, T:0.35
Consensus pattern (476 bp):
TTAGGATACATGACATTGATGCTTTGGTGATGCAAAAAAAGCTTTTCTTACCACCGTTTTTGATA
GAATCAAAGTTTGTCTCTTAAATAAGACAAACAAGAAGAGTCATACTAATCCCTATTCTTTTCAA
GATTAGGCACCATAAACATAGTCTTCTCATAAGGATACACGATATTGATGCTTTGGTTTTGAAAG
AAAAGCTTTCTTCCCCCCAATTTTTGTAAAGTCTTACTTCGTGCCTCAAATGAGACAAACATTGA
TTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATA
AATATTATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTACCTTAAAATCAAA
GTTCATCCCTTAAATAAGGCAAGCATCGATTCTCGTAACAGTCTCCATTCTTTTCAAGATTGGGA
ACCAAAAACACATTCCCTTCA
Found at i:122635 original size:157 final size:156
Alignment explanation
Indices: 121800--122660 Score: 399
Period size: 157 Copynumber: 5.5 Consensus size: 156
121790 TTCTTCTCAG
* * * * * *
121800 GATTAGGCACCATAAACACAATCTTCTCATAAGGATACACGATATTGATGCTTTTGTTTTGAAAG
1 GATTAGGCACTATAAACACATTCTTCTCATTAGGATA-AAGATATTGATGCTTTGGTTTTGCAAG
* * ** * * * *
121865 -AAAGTCTTTCTTCCC-CTAATTTTTGTAAAGCCTGACTTCGTGCCTCAAATGAGACAAACATTG
65 AAAAG-CTTTTTTCCCACCAATTTTTGTAAATTCTAACTTCGTGCCTCAAATAAGACAAAAATGG
* *
121928 ATTCTAGTAATAATCTTCATTCATTTTGT
129 ATTCTAGTAACAACCTTCATTCA-TTTGT
* * * * * ** *
121957 AATTAAGCACTATAAACACATTCTCCTCATTAGGATAAATGTTATTGATGATTTTCTTTTGCATG
1 GATTAGGCACTATAAACACATTCTTCTCATTAGGATAAA-GATATTGATGCTTTGGTTTTGCAAG
* * ** ** * * * * * * * **
122022 GAAATCTTTTCTTTGC-CTTATTTACCT-TAAAATCAAAGTTCATCCCTTAAATAAGACAAGCAT
65 AAAAGCTTTT-TTCCCACCAATTT--TTGTAAATTCTAACTTCGTGCCTCAAATAAGACAAAAAT
* * ** * * **
122085 TGATTCTCGTAAC-AGTTTTATTCTTTTCAA
127 GGATTCTAGTAACAACCTTCATTCATTT-GT
* * * * * * * * ****
122115 AATTGGGAACCAAAAACACATTC-CCTTCATTTGGATACAAGACATTGATGCTTTGGTGACACAA
1 GATTAGGCACTATAAACACATTCTTC-TCATTAGGATA-AAGATATTGATGCTTTGGTTTTGCAA
* * ** * * * *
122179 -AAAGAGCTTTTCTTACCA-TAGCTTTTGATAGAA-TCAAAGTTTGT-CTCTTAAATAAGACAAA
64 GAAA-AGCTTTT-TTCCCACCAATTTTTG-TA-AATTCTAACTTCGTGC-CTCAAATAAGACAAA
* * * **
122240 CATGAAGAGTC-A-T-ACTAATCC-T-ATT-TTTTCAA
124 AATG--GATTCTAGTAAC-AA-CCTTCATTCATTT-GT
* * * * * * **
122272 GATTAGGCACCATACACATAGTCTTCTCATAAGGATACACGATATTGATGCTTTGGTTTCACAAG
1 GATTAGGCACTATAAACACATTCTTCTCATTAGGATA-AAGATATTGATGCTTTGGTTTTGCAAG
* ** *
122337 AAAGGCTTTTTTTTCACCAATTTTTGTAAATTCTAGCTTCGTGCCTCAAATAAGACAAAAATGGA
65 AAAAGCTTTTTTCCCACCAATTTTTGTAAATTCTAACTTCGTGCCTCAAATAAGACAAAAATGGA
*
122402 TTCTAGTAACAATCTTCATTCATTTGT
130 TTCTAGTAACAACCTTCATTCATTTGT
* * * * *
122429 CATTAGGCACTGTAAACACATTCTCCTCCTTA-TATTAAAGGATATTGATGCTTTGGTTTTGCAA
1 GATTAGGCACTATAAACACATTCTTCTCATTAGGA-TAAA-GATATTGATGCTTTGGTTTTGCAA
* * * * * **
122493 GAAAAGCTTTTTTCCCTCCAATTTTTGTAAAGTT-TAACTTTGTTCCTCAATTGAGACAACCATG
64 GAAAAGCTTTTTTCCCACCAATTTTTGTAAA-TTCTAACTTCGTGCCTCAAATAAGACAAAAATG
*** *
122557 GATTCTAGTAATGCCCTTCTTTCATTTTGT
128 GATTCTAGTAACAACCTTCATTCA-TTTGT
* * * ** *
122587 GATTAGGCACTATAAACACATTCTTCACATTAGGATAAAGATAATGATGATTTTCTTTTGCATGA
1 GATTAGGCACTATAAACACATTCTTCTCATTAGGATAAAGATATTGATGCTTTGGTTTTGCAAGA
*
122652 AAATCTTTT
66 AAAGCTTTT
122661 GTTTGCCTTA
Statistics
Matches: 529, Mismatches: 140, Indels: 70
0.72 0.19 0.09
Matches are distributed among these distances:
154 4 0.01
155 4 0.01
156 38 0.07
157 283 0.53
158 151 0.29
159 44 0.08
160 5 0.01
ACGTcount: A:0.31, C:0.18, G:0.13, T:0.37
Consensus pattern (156 bp):
GATTAGGCACTATAAACACATTCTTCTCATTAGGATAAAGATATTGATGCTTTGGTTTTGCAAGA
AAAGCTTTTTTCCCACCAATTTTTGTAAATTCTAACTTCGTGCCTCAAATAAGACAAAAATGGAT
TCTAGTAACAACCTTCATTCATTTGT
Found at i:124556 original size:16 final size:15
Alignment explanation
Indices: 124530--124564 Score: 54
Period size: 16 Copynumber: 2.3 Consensus size: 15
124520 ATGAAAATGA
124530 ATTTTTTATTATTTT
1 ATTTTTTATTATTTT
124545 ATTTTGTTATTATTTT
1 ATTTT-TTATTATTTT
124561 -TTTT
1 ATTTT
124565 AATTTTAAAT
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
15 9 0.47
16 10 0.53
ACGTcount: A:0.17, C:0.00, G:0.03, T:0.80
Consensus pattern (15 bp):
ATTTTTTATTATTTT
Found at i:124933 original size:20 final size:20
Alignment explanation
Indices: 124910--124959 Score: 91
Period size: 20 Copynumber: 2.5 Consensus size: 20
124900 CATTTAAATA
124910 TATCGATACAGATTGCATTG
1 TATCGATACAGATTGCATTG
*
124930 TATCGATACAGATTGCATTT
1 TATCGATACAGATTGCATTG
124950 TATCGATACA
1 TATCGATACA
124960 TTGTATCGAT
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
20 29 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (20 bp):
TATCGATACAGATTGCATTG
Found at i:124986 original size:20 final size:20
Alignment explanation
Indices: 124961--125012 Score: 86
Period size: 20 Copynumber: 2.6 Consensus size: 20
124951 ATCGATACAT
**
124961 TGTATCGATACATGACCAAA
1 TGTATCGATACATGAAAAAA
124981 TGTATCGATACATGAAAAAA
1 TGTATCGATACATGAAAAAA
125001 TGTATCGATACA
1 TGTATCGATACA
125013 AGTCATTCGC
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 30 1.00
ACGTcount: A:0.42, C:0.15, G:0.15, T:0.27
Consensus pattern (20 bp):
TGTATCGATACATGAAAAAA
Found at i:125082 original size:13 final size:13
Alignment explanation
Indices: 125064--125088 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
125054 ACACACAGTA
125064 TGTATCGATACAT
1 TGTATCGATACAT
125077 TGTATCGATACA
1 TGTATCGATACA
125089 CCATAAAATG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:125085 original size:32 final size:33
Alignment explanation
Indices: 125044--125111 Score: 102
Period size: 33 Copynumber: 2.1 Consensus size: 33
125034 GTAGCCAAAC
**
125044 TTGTATCGATACA-CACAGTATGTATCGATACA
1 TTGTATCGATACACCACAAAATGTATCGATACA
*
125076 TTGTATCGATACACCATAAAATGTATCGATACA
1 TTGTATCGATACACCACAAAATGTATCGATACA
125109 TTG
1 TTG
125112 GCTTGTAACG
Statistics
Matches: 32, Mismatches: 3, Indels: 1
0.89 0.08 0.03
Matches are distributed among these distances:
32 13 0.41
33 19 0.59
ACGTcount: A:0.35, C:0.18, G:0.15, T:0.32
Consensus pattern (33 bp):
TTGTATCGATACACCACAAAATGTATCGATACA
Found at i:126064 original size:33 final size:32
Alignment explanation
Indices: 126001--126068 Score: 91
Period size: 33 Copynumber: 2.1 Consensus size: 32
125991 GTAGCTAAAC
** *
126001 TTGTATCGATACACACAGTATGTATTGATACA
1 TTGTATCGATACACACAAAATGTATCGATACA
*
126033 TTGTATCGATACACCATAAAATGTATCGATACA
1 TTGTATCGATACA-CACAAAATGTATCGATACA
126066 TTG
1 TTG
126069 GCTTGTAACT
Statistics
Matches: 31, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
32 13 0.42
33 18 0.58
ACGTcount: A:0.35, C:0.16, G:0.15, T:0.34
Consensus pattern (32 bp):
TTGTATCGATACACACAAAATGTATCGATACA
Found at i:134612 original size:20 final size:20
Alignment explanation
Indices: 134581--134637 Score: 69
Period size: 20 Copynumber: 2.9 Consensus size: 20
134571 GTCAAAACCC
*
134581 TGAAAAGTATCGATACACAT
1 TGAAATGTATCGATACACAT
* *
134601 TTAAATGTATCGATACAGAT
1 TGAAATGTATCGATACACAT
* *
134621 TGCATTGTATCGATACA
1 TGAAATGTATCGATACA
134638 TTGTATCGAT
Statistics
Matches: 31, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
20 31 1.00
ACGTcount: A:0.39, C:0.14, G:0.16, T:0.32
Consensus pattern (20 bp):
TGAAATGTATCGATACACAT
Found at i:134641 original size:13 final size:13
Alignment explanation
Indices: 134623--134648 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
134613 ATACAGATTG
134623 CATTGTATCGATA
1 CATTGTATCGATA
134636 CATTGTATCGATA
1 CATTGTATCGATA
134649 TATGAACAAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
CATTGTATCGATA
Found at i:134664 original size:20 final size:21
Alignment explanation
Indices: 134639--134691 Score: 81
Period size: 20 Copynumber: 2.6 Consensus size: 21
134629 ATCGATACAT
* *
134639 TGTATCGATATATGAACA-AA
1 TGTATCGATACATGAAAAGAA
134659 TGTATCGATACATGAAAAGAA
1 TGTATCGATACATGAAAAGAA
134680 TGTATCGATACA
1 TGTATCGATACA
134692 AGTCATTGGC
Statistics
Matches: 30, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
20 16 0.53
21 14 0.47
ACGTcount: A:0.43, C:0.11, G:0.17, T:0.28
Consensus pattern (21 bp):
TGTATCGATACATGAAAAGAA
Found at i:135505 original size:13 final size:13
Alignment explanation
Indices: 135487--135512 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
135477 CAATTTTTTG
135487 TGTATCGATACAT
1 TGTATCGATACAT
135500 TGTATCGATACAT
1 TGTATCGATACAT
135513 ACTTGCATGT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:136252 original size:21 final size:21
Alignment explanation
Indices: 136211--136254 Score: 54
Period size: 21 Copynumber: 2.1 Consensus size: 21
136201 CTCTCCTTTA
* *
136211 TCTCCCCCGTTTATTAATAAT
1 TCTCCCCCGTTAATCAATAAT
136232 TCTCCCCC-TTAATCAAGTAAT
1 TCTCCCCCGTTAATCAA-TAAT
136253 TC
1 TC
136255 ATATCAAAAA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
20 6 0.30
21 14 0.70
ACGTcount: A:0.25, C:0.32, G:0.05, T:0.39
Consensus pattern (21 bp):
TCTCCCCCGTTAATCAATAAT
Found at i:138080 original size:13 final size:13
Alignment explanation
Indices: 138062--138087 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
138052 ATAATCACCC
138062 TGTATCGATACAA
1 TGTATCGATACAA
138075 TGTATCGATACAA
1 TGTATCGATACAA
138088 AGAAAAATGT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:140185 original size:15 final size:15
Alignment explanation
Indices: 140165--140195 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
140155 ATTTCGTTTG
*
140165 GAGCTTCTTCATTTT
1 GAGCTTCCTCATTTT
140180 GAGCTTCCTCATTTT
1 GAGCTTCCTCATTTT
140195 G
1 G
140196 GACATTTTTA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.13, C:0.23, G:0.16, T:0.48
Consensus pattern (15 bp):
GAGCTTCCTCATTTT
Found at i:142028 original size:21 final size:21
Alignment explanation
Indices: 141999--142043 Score: 56
Period size: 21 Copynumber: 2.1 Consensus size: 21
141989 AAGTTTTCAT
*
141999 TTTTCTTAGCTAAC-TCATTA
1 TTTTCTTAGCCAACTTCATTA
*
142019 TTTTCATTAGCCAACTTCTTTA
1 TTTTC-TTAGCCAACTTCATTA
142041 TTT
1 TTT
142044 CAACTTGCAA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
20 5 0.24
21 8 0.38
22 8 0.38
ACGTcount: A:0.22, C:0.20, G:0.04, T:0.53
Consensus pattern (21 bp):
TTTTCTTAGCCAACTTCATTA
Found at i:144280 original size:13 final size:13
Alignment explanation
Indices: 144262--144287 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
144252 CAATTTTTTG
144262 TGTATCGATACAT
1 TGTATCGATACAT
144275 TGTATCGATACAT
1 TGTATCGATACAT
144288 ACTTGCTGTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:153818 original size:42 final size:42
Alignment explanation
Indices: 153772--153890 Score: 175
Period size: 42 Copynumber: 2.8 Consensus size: 42
153762 TTCTTCTCTC
* * * *
153772 CTCCTTCTGTCATCCCTCCTCTCTCTATTATCTTTCCTGTCT
1 CTCCTCCTATCATCCCTCCTCTCTCTACTATCTCTCCTGTCT
*
153814 CTCCTCCTATCATCCCTCCTATCTCTACTATCTCTCCTGTCT
1 CTCCTCCTATCATCCCTCCTCTCTCTACTATCTCTCCTGTCT
* *
153856 CTCCTCCTATCATCCCTCCTCTCTCTTCTTTCTCT
1 CTCCTCCTATCATCCCTCCTCTCTCTACTATCTCT
153891 TTGAGGGCTA
Statistics
Matches: 69, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
42 69 1.00
ACGTcount: A:0.08, C:0.45, G:0.03, T:0.45
Consensus pattern (42 bp):
CTCCTCCTATCATCCCTCCTCTCTCTACTATCTCTCCTGTCT
Found at i:153831 original size:12 final size:11
Alignment explanation
Indices: 153806--153880 Score: 50
Period size: 12 Copynumber: 6.8 Consensus size: 11
153796 CTATTATCTT
*
153806 TCCTGTCTCTCC
1 TCCTATCTC-CC
153818 TCCTATCATCCC
1 TCCTATC-TCCC
153830 TCCTATCT--C
1 TCCTATCTCCC
*
153839 TACTATCT--C
1 TCCTATCTCCC
*
153848 TCCTGTCTCTCC
1 TCCTATCTC-CC
153860 TCCTATCATCCC
1 TCCTATC-TCCC
*
153872 TCCTCTCTC
1 TCCTATCTC
153881 TTCTTTCTCT
Statistics
Matches: 52, Mismatches: 6, Indels: 11
0.75 0.09 0.16
Matches are distributed among these distances:
9 15 0.29
11 3 0.06
12 30 0.58
13 4 0.08
ACGTcount: A:0.09, C:0.48, G:0.03, T:0.40
Consensus pattern (11 bp):
TCCTATCTCCC
Found at i:157827 original size:13 final size:13
Alignment explanation
Indices: 157808--157846 Score: 69
Period size: 13 Copynumber: 3.0 Consensus size: 13
157798 ACAGCATTCC
157808 CTGTATCGATACA
1 CTGTATCGATACA
*
157821 TTGTATCGATACA
1 CTGTATCGATACA
157834 CTGTATCGATACA
1 CTGTATCGATACA
157847 AGGGGATTAT
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
13 24 1.00
ACGTcount: A:0.31, C:0.21, G:0.15, T:0.33
Consensus pattern (13 bp):
CTGTATCGATACA
Found at i:159692 original size:23 final size:19
Alignment explanation
Indices: 159650--159687 Score: 76
Period size: 19 Copynumber: 2.0 Consensus size: 19
159640 AAATAAATTT
159650 TATGATTAAGGGGGAGAAA
1 TATGATTAAGGGGGAGAAA
159669 TATGATTAAGGGGGAGAAA
1 TATGATTAAGGGGGAGAAA
159688 GAAATGGTTA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.42, C:0.00, G:0.37, T:0.21
Consensus pattern (19 bp):
TATGATTAAGGGGGAGAAA
Found at i:160298 original size:20 final size:20
Alignment explanation
Indices: 160267--160323 Score: 69
Period size: 20 Copynumber: 2.9 Consensus size: 20
160257 GTCAAAACCC
*
160267 TGAAAAGTATCGATACACAT
1 TGAAATGTATCGATACACAT
* *
160287 TTAAATGTATCGATACAGAT
1 TGAAATGTATCGATACACAT
* *
160307 TGCATTGTATCGATACA
1 TGAAATGTATCGATACA
160324 TTGTATCGAT
Statistics
Matches: 31, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
20 31 1.00
ACGTcount: A:0.39, C:0.14, G:0.16, T:0.32
Consensus pattern (20 bp):
TGAAATGTATCGATACACAT
Found at i:160327 original size:13 final size:13
Alignment explanation
Indices: 160309--160337 Score: 58
Period size: 13 Copynumber: 2.2 Consensus size: 13
160299 ATACAGATTG
160309 CATTGTATCGATA
1 CATTGTATCGATA
160322 CATTGTATCGATA
1 CATTGTATCGATA
160335 CAT
1 CAT
160338 GACCAAATGT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.31, C:0.17, G:0.14, T:0.38
Consensus pattern (13 bp):
CATTGTATCGATA
Found at i:160350 original size:20 final size:21
Alignment explanation
Indices: 160325--160377 Score: 81
Period size: 21 Copynumber: 2.6 Consensus size: 21
160315 ATCGATACAT
**
160325 TGTATCGATACATG-ACCAAA
1 TGTATCGATACATGAAAAAAA
160345 TGTATCGATACATGAAAAAAA
1 TGTATCGATACATGAAAAAAA
160366 TGTATCGATACA
1 TGTATCGATACA
160378 AGTTATTGGC
Statistics
Matches: 30, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
20 14 0.47
21 16 0.53
ACGTcount: A:0.43, C:0.15, G:0.15, T:0.26
Consensus pattern (21 bp):
TGTATCGATACATGAAAAAAA
Found at i:160447 original size:13 final size:13
Alignment explanation
Indices: 160429--160453 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
160419 ACACACAGTA
160429 TGTATCGATACAT
1 TGTATCGATACAT
160442 TGTATCGATACA
1 TGTATCGATACA
160454 CCATAAAATG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:160473 original size:33 final size:32
Alignment explanation
Indices: 160409--160476 Score: 91
Period size: 33 Copynumber: 2.1 Consensus size: 32
160399 GTAGCCAAAC
** *
160409 TTGTATCGATACACACAGTATGTATCGATACA
1 TTGTATCGATACACACAAAATGTATCAATACA
*
160441 TTGTATCGATACACCATAAAATGTATCAATACA
1 TTGTATCGATACA-CACAAAATGTATCAATACA
160474 TTG
1 TTG
160477 GCTTGTAACG
Statistics
Matches: 31, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
32 13 0.42
33 18 0.58
ACGTcount: A:0.37, C:0.18, G:0.13, T:0.32
Consensus pattern (32 bp):
TTGTATCGATACACACAAAATGTATCAATACA
Found at i:162483 original size:107 final size:107
Alignment explanation
Indices: 162284--162487 Score: 264
Period size: 107 Copynumber: 1.9 Consensus size: 107
162274 TTGCTATTCG
* * * * * * * * *
162284 TGCTTGTTGGAGGTGCTGTCATTGCTGCCGTGGAAGCTGCTGCTTGTTGGAGTTGTTGTTTTTGA
1 TGCTCGTTGGAGCTGCTATCATTGCTCCCATGGAAACTGCTGCTTGTTGGAGCTGCTGATTTTGA
* * * *
162349 GTGTTTTGTGGAGCTGTGGTTCGTGCTTGTTGTGGAAGCTGT
66 GTGCTCTGTGGAGCTATGGTTCATGCTTGTTGTGGAAGCTGT
* *
162391 TGCTCGTTGGAGCTGCTATCGTTGCTCCCATGGAAACTGCTGCTTGTTGGAGCTGCTGATTTTGG
1 TGCTCGTTGGAGCTGCTATCATTGCTCCCATGGAAACTGCTGCTTGTTGGAGCTGCTGATTTTGA
*
162456 GTGCTCTGTGGAGCTATTGTTCATGCTTGTTG
66 GTGCTCTGTGGAGCTATGGTTCATGCTTGTTG
162488 GAGCTTTCGA
Statistics
Matches: 81, Mismatches: 16, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
107 81 1.00
ACGTcount: A:0.10, C:0.16, G:0.34, T:0.40
Consensus pattern (107 bp):
TGCTCGTTGGAGCTGCTATCATTGCTCCCATGGAAACTGCTGCTTGTTGGAGCTGCTGATTTTGA
GTGCTCTGTGGAGCTATGGTTCATGCTTGTTGTGGAAGCTGT
Found at i:163236 original size:31 final size:31
Alignment explanation
Indices: 163198--163263 Score: 105
Period size: 31 Copynumber: 2.1 Consensus size: 31
163188 TTCTTTCCAT
163198 TTGCATGTGTCCCCCATGATTGCATGCTACA
1 TTGCATGTGTCCCCCATGATTGCATGCTACA
* * *
163229 TTGCATGTTTCTCGCATGATTGCATGCTACA
1 TTGCATGTGTCCCCCATGATTGCATGCTACA
163260 TTGC
1 TTGC
163264 CTTGCATGCA
Statistics
Matches: 32, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 32 1.00
ACGTcount: A:0.18, C:0.26, G:0.20, T:0.36
Consensus pattern (31 bp):
TTGCATGTGTCCCCCATGATTGCATGCTACA
Found at i:163921 original size:42 final size:42
Alignment explanation
Indices: 163875--164921 Score: 840
Period size: 42 Copynumber: 25.0 Consensus size: 42
163865 GGCAGTCTTA
* *
163875 AGGGTCAAAGCCAACAAGCAGACTAAGGGCAGGAAAGTCTCC
1 AGGGTCAAAGCCGACAAGCAGACTAAGGGAAGGAAAGTCTCC
* * *
163917 AGGGTCAAAGCCGACAAGTAGATTAAGGTAAGGAAAGTCTCC
1 AGGGTCAAAGCCGACAAGCAGACTAAGGGAAGGAAAGTCTCC
* * * *
163959 AAGGTCGAAGCTGACAAGCAGACTAAGGGAAAGAAAGTCTCC
1 AGGGTCAAAGCCGACAAGCAGACTAAGGGAAGGAAAGTCTCC
* * * * * *
164001 ACGATTAAAGCCAACAGGCAGACTAAGGAAAGGAAAGTCTCC
1 AGGGTCAAAGCCGACAAGCAGACTAAGGGAAGGAAAGTCTCC
* * * ** * **
164043 AGGGTTAGAGCTGACATCCAGACTAAGGGAAGGAAAGTTTTG
1 AGGGTCAAAGCCGACAAGCAGACTAAGGGAAGGAAAGTCTCC
* * * * *
164085 AGAGTCAAAGCCGGCAGGTAGACTAAGGGAATGAAAGTCTCC
1 AGGGTCAAAGCCGACAAGCAGACTAAGGGAAGGAAAGTCTCC
* ** * ** *
164127 AGGTTCAAAGCCGACTGGCAAACTTTGGGAATGAAAGTCTCC
1 AGGGTCAAAGCCGACAAGCAGACTAAGGGAAGGAAAGTCTCC
** * * * * * * **
164169 AAAGTTAAAGTCGATAGGCACACTAAGGAAAAAAAAGTC-CC
1 AGGGTCAAAGCCGACAAGCAGACTAAGGGAAGGAAAGTCTCC
* * * * *
164210 TCGGGTCAAAGTCAACAATCAGACTAAGGGAAGGAAAATCTCC
1 -AGGGTCAAAGCCGACAAGCAGACTAAGGGAAGGAAAGTCTCC
* * *
164253 AGGGTCAAAGCCGACAGGTAGACTAAGGGAAAGAAAGTCTCC
1 AGGGTCAAAGCCGACAAGCAGACTAAGGGAAGGAAAGTCTCC
** * * *
164295 A--GTCAAAGCTAACAAGCAGACTGAGGGTAGGAAAGTGTCC
1 AGGGTCAAAGCCGACAAGCAGACTAAGGGAAGGAAAGTCTCC
* * * *
164335 AGGATCAAAGCTGACAAGCAGACTGAGGGTAGGAAAGTCTCC
1 AGGGTCAAAGCCGACAAGCAGACTAAGGGAAGGAAAGTCTCC
* * *
164377 AGGATCAAAGCCGATATGCAGACTAAGGGAAGGAAAGTCTCC
1 AGGGTCAAAGCCGACAAGCAGACTAAGGGAAGGAAAGTCTCC
* * * *
164419 AAGGTCAAAGTCGACAGGCAGACTAA-GGAAGAAAAGTCTCC
1 AGGGTCAAAGCCGACAAGCAGACTAAGGGAAGGAAAGTCTCC
* * * * *
164460 AGGGTCAAAGTCGACAGGTAGACTAAGGGAAAGAAAGTCTTC
1 AGGGTCAAAGCCGACAAGCAGACTAAGGGAAGGAAAGTCTCC
* * * *
164502 ACGGTCAAAGCCGAC-AGACAAACTAAAGGAAGGAAAGTCTCT
1 AGGGTCAAAGCCGACAAG-CAGACTAAGGGAAGGAAAGTCTCC
* *
164544 AAGGTCAAAGCCGACAAGCAGACTAAGGGAAGGAAAGTCTCT
1 AGGGTCAAAGCCGACAAGCAGACTAAGGGAAGGAAAGTCTCC
* * * * ** *
164586 AAGGTCAAAGCTGA-AGGCAAACTTTGGGAAGGAAAGTCTCT
1 AGGGTCAAAGCCGACAAGCAGACTAAGGGAAGGAAAGTCTCC
* * * * *
164627 AGGGTCAAAGCTGATAGGCAGACTAAGGGAAAGAAAGTCTCT
1 AGGGTCAAAGCCGACAAGCAGACTAAGGGAAGGAAAGTCTCC
** * * * * * * *
164669 AAAGTCAAAGCCGATAGGCAAACCAAGAGAAAGAAAGTCTCTT
1 AGGGTCAAAGCCGACAAGCAGACTAAGGGAAGGAAAGTCTC-C
* * * **
164712 A-GGTCAAAGCTGAC-AGTCAGACTTAGGAAAAAAAAGT-TCC
1 AGGGTCAAAGCCGACAAG-CAGACTAAGGGAAGGAAAGTCTCC
* * * * *
164752 AAGGTTAAAGTCGAC-AGTCAGACTAAGGGAAGAAAAGTCTCT
1 AGGGTCAAAGCCGACAAG-CAGACTAAGGGAAGGAAAGTCTCC
* * *
164794 AGGGTCAAAGCC-AGTAAGCAGACTAAGGGAAAGAAAGTCTCT
1 AGGGTCAAAGCCGA-CAAGCAGACTAAGGGAAGGAAAGTCTCC
* * * *
164836 AAGGTCAAAGCTGACAGGCGGACTAAGGGAAGGAAAGTCTCC
1 AGGGTCAAAGCCGACAAGCAGACTAAGGGAAGGAAAGTCTCC
* * * * *
164878 AAGGTCAAAGCTGA-TAGACACATTAAGGGAAGGAAAGTCTCC
1 AGGGTCAAAGCCGACAAG-CAGACTAAGGGAAGGAAAGTCTCC
164920 AG
1 AG
164922 AAGTTTAATG
Statistics
Matches: 811, Mismatches: 178, Indels: 32
0.79 0.17 0.03
Matches are distributed among these distances:
40 33 0.04
41 112 0.14
42 657 0.81
43 9 0.01
ACGTcount: A:0.39, C:0.18, G:0.28, T:0.15
Consensus pattern (42 bp):
AGGGTCAAAGCCGACAAGCAGACTAAGGGAAGGAAAGTCTCC
Found at i:164764 original size:292 final size:292
Alignment explanation
Indices: 163894--164921 Score: 1006
Period size: 292 Copynumber: 3.5 Consensus size: 292
163884 GCCAACAAGC
* * * * *
163894 AGACTAAGGGCAGGAAAGTCTCCAGGGTCAAAGCCGACAAGTAGA-TTAAGGTAAGGAAAGTCTC
1 AGACTAAGGGAAAGAAAGTCTTCAGGGTCAAAGCCGACAAGCAGACTAAAGG-AAGGAAAGTCTC
* * * * * *
163958 CAAGGTCGAAGCTGACAAGCAGACTAAGGGAAAGAAAGTCTCCACGATTAAAGCCAACAGGCAGA
65 CAAGGTCAAAGCCGACAAGCAGACTAAGGGAAAGAAAGTCTCCAAGGTCAAAGCTAACAGGCAGA
* * * * ** * *
164023 CTAAGGAAAGGAAAGTCTCCAGGGTTAGAGCTGACATCCAGACTAAGGGAAGGAAAGT-TTTGAG
130 CTTAGGGAAGGAAAGTCTCCAGGGTCAAAGCTGACAAGCAGACTAAGGGAAGGAAAGTCTCT-AA
** * * * * * *
164087 AGTCAAAGCCGGCAGGTAGACTAAGGGAATGAAAGTCTCCAGGTTCAAAGCCGACTGGCAAACTT
194 AGTCAAAGCCGATAGGCAGACTAAGGGAAAGAAAGTCTCAAGG-TCAAAGCTGACAGGCAGAC-T
* ** * * *
164152 TGGGAATGAAAGTCTCCAAAGTTAAAGTCGATAGGC
257 TAGGAAAAAAAGTCTCCAAGGTTAAAGTCGACAGGT
* * * * * * * * *
164188 ACACTAAGGAAAAAAAAGTCCCTC-GGGTCAAAGTCAACAATCAGACTAAGGGAAGGAAAATCTC
1 AGACTAAGGGAAAGAAAGT-CTTCAGGGTCAAAGCCGACAAGCAGACTAAAGGAAGGAAAGTCTC
* * * *
164252 CAGGGTCAAAGCCGACAGGTAGACTAAGGGAAAGAAAGTCTCC-A-GTCAAAGCTAACAAGCAGA
65 CAAGGTCAAAGCCGACAAGCAGACTAAGGGAAAGAAAGTCTCCAAGGTCAAAGCTAACAGGCAGA
* * * * * * * *
164315 CTGAGGGTAGGAAAGTGTCCAGGATCAAAGCTGACAAGCAGACTGAGGGTAGGAAAGTCTC-CAG
130 CTTAGGGAAGGAAAGTCTCCAGGGTCAAAGCTGACAAGCAGACTAAGGGAAGGAAAGTCTCTAAA
* *
164379 GATCAAAGCCGATATGCAGACTAAGGGAAGGAAAGTCTCCAAGGTCAAAG-TCGACAGGCAGACT
195 G-TCAAAGCCGATAGGCAGACTAAGGGAAAGAAAGTCT-CAAGGTCAAAGCT-GACAGGCAGACT
* * * *
164443 AAGGAAGAAAAGTCTCCAGGGTCAAAGTCGACAGGT
257 TAGGAAAAAAAGTCTCCAAGGTTAAAGTCGACAGGT
* *
164479 AGACTAAGGGAAAGAAAGTCTTCACGGTCAAAGCCGAC-AGACAAACTAAAGGAAGGAAAGTCTC
1 AGACTAAGGGAAAGAAAGTCTTCAGGGTCAAAGCCGACAAG-CAGACTAAAGGAAGGAAAGTCTC
* * * * *
164543 TAAGGTCAAAGCCGACAAGCAGACTAAGGGAAGGAAAGTCTCTAAGGTCAAAGCTGA-AGGCAAA
65 CAAGGTCAAAGCCGACAAGCAGACTAAGGGAAAGAAAGTCTCCAAGGTCAAAGCTAACAGGCAGA
* * * * *
164607 CTTTGGGAAGGAAAGTCTCTAGGGTCAAAGCTGATAGGCAGACTAAGGGAAAGAAAGTCTCTAAA
130 CTTAGGGAAGGAAAGTCTCCAGGGTCAAAGCTGACAAGCAGACTAAGGGAAGGAAAGTCTCTAAA
* * * * *
164672 GTCAAAGCCGATAGGCAAACCAAGAGAAAGAAAGTCTCTTAGGTCAAAGCTGACAGTCAGACTTA
195 GTCAAAGCCGATAGGCAGACTAAGGGAAAGAAAGTCTC-AAGGTCAAAGCTGACAGGCAGACTTA
164737 GGAAAAAAAAGT-TCCAAGGTTAAAGTCGACA-GT
259 GG-AAAAAAAGTCTCCAAGGTTAAAGTCGACAGGT
* * *
164770 CAGACTAAGGG-AAGAAAAGTC-TCTAGGGTCAAAGCC-AGTAAGCAGACTAAGGGAAAGAAAGT
1 -AGACTAAGGGAAAG-AAAGTCTTC-AGGGTCAAAGCCGA-CAAGCAGACTAAAGGAAGGAAAGT
* * * * * * * *
164832 CTCTAAGGTCAAAGCTGACAGGCGGACTAAGGGAAGGAAAGTCTCCAAGGTCAAAGCTGATAGAC
62 CTCCAAGGTCAAAGCCGACAAGCAGACTAAGGGAAAGAAAGTCTCCAAGGTCAAAGCTAACAGGC
*
164897 ACA-TTAAGGGAAGGAAAGTCTCCAG
127 AGACTT-AGGGAAGGAAAGTCTCCAG
164922 AAGTTTAATG
Statistics
Matches: 599, Mismatches: 114, Indels: 43
0.79 0.15 0.06
Matches are distributed among these distances:
290 4 0.01
291 122 0.20
292 337 0.56
293 50 0.08
294 80 0.13
295 6 0.01
ACGTcount: A:0.39, C:0.18, G:0.28, T:0.15
Consensus pattern (292 bp):
AGACTAAGGGAAAGAAAGTCTTCAGGGTCAAAGCCGACAAGCAGACTAAAGGAAGGAAAGTCTCC
AAGGTCAAAGCCGACAAGCAGACTAAGGGAAAGAAAGTCTCCAAGGTCAAAGCTAACAGGCAGAC
TTAGGGAAGGAAAGTCTCCAGGGTCAAAGCTGACAAGCAGACTAAGGGAAGGAAAGTCTCTAAAG
TCAAAGCCGATAGGCAGACTAAGGGAAAGAAAGTCTCAAGGTCAAAGCTGACAGGCAGACTTAGG
AAAAAAAGTCTCCAAGGTTAAAGTCGACAGGT
Found at i:168330 original size:21 final size:22
Alignment explanation
Indices: 168283--168334 Score: 63
Period size: 21 Copynumber: 2.4 Consensus size: 22
168273 ATTTTTACTT
*
168283 AAAAACATTTGATTTAAAGTTC
1 AAAAACATTTGATTTAAAGCTC
168305 AAAAACATTTG-TTTATAA-CTC
1 AAAAACATTTGATTTA-AAGCTC
*
168326 TAAAACATT
1 AAAAACATT
168335 CGTTGATAGA
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
21 14 0.52
22 13 0.48
ACGTcount: A:0.46, C:0.12, G:0.06, T:0.37
Consensus pattern (22 bp):
AAAAACATTTGATTTAAAGCTC
Found at i:169759 original size:476 final size:476
Alignment explanation
Indices: 168464--178715 Score: 12708
Period size: 476 Copynumber: 21.6 Consensus size: 476
168454 GATCCTAATA
* * * *
168464 GTCTCTTAAATAAGAGAAACTAGAATAGTCATACTAATCCCTGTTCTTTTCAGGATTTGGCACCA
1 GTCTCTTAAATAAGACAAACTAGAAGAGTCATACTAATCCCTATTCTTTTCAGGATTAGGCACCA
** * *
168529 TAAATGTGGTCTTCTCATAAGGATACACGATATTCATGCTTTGGTTTTGAAAGAAAGGCTTTCTT
66 TAAACATAGTCTTCTCATAAGGATACACGATATTGATGCTTTGGTTTTGAAAGAAAGGCTTTCTT
* * * *
168594 CCCCCCAACTTTTGTAAAGTCTAACATCGTGCCTCAAACGAGACAAACATTGATTCTAGTAATGG
131 CCCCCCAATTTTTGTAAAGTCTAACTTCGTGCCTCAAATGAGACAAACATTGATTCTAGTAATGA
* * * * * * *
168659 CCTTCATTCATTTTTTAACTAGGCACTTTAAACACATTCTTCACATTAGGATAAAGGATAATGAT
196 CCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAAGGATATTGAT
* *
168724 GATTTTCTTTTGCATGGAAATCTTTTCTTTGCCTTATTTACATTAAAATCAAAGTTCATCCCTTA
261 GATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTACCTTAAAATCAAAGTTCATCCCTTA
* *
168789 AATAAGCCAAGCATCGATTCTCGTAACAGTCTCCATTCTTTTCAAGATTGGGAAACAAAAACACA
326 AATAAGGCAAGCATCGATTCTCGTAACAGTCTCCATTCTTTTCAAGATTGGGAACCAAAAACACA
* * * * * *
168854 TTCCTTTCATTAGTG-TACATGACATTGATGCTTTGGTGACGCAAAATACGCTTTTCCTACCACT
391 TTCCCTTCATTAG-GATACATGACATTGATGCTTTGGTGATGCAAAAAAAGCTTTTCTTACCACC
168918 GTTTTTGATAGAATCAAAGTTT
455 GTTTTTGATAGAATCAAAGTTT
* * * * * * * *
168940 GTTTCTTAAATAAGAGAAACTAGAATAATCAAACAAATCCCTATTCTTTTCAAGACTAGGCACCA
1 GTCTCTTAAATAAGACAAACTAGAAGAGTCATACTAATCCCTATTCTTTTCAGGATTAGGCACCA
* * *
169005 TAAACGTAGTCTTCTCATAAGAATACACGATATTCATGCTTTGG-TTTGAAAGAAAGGCTTTCTT
66 TAAACATAGTCTTCTCATAAGGATACACGATATTGATGCTTTGGTTTTGAAAGAAAGGCTTTCTT
* * * * *
169069 CCCCCCAATTTTTGTAGAGTCTAACATCATGCCTCAAACGAGACAAACATTGATTCTAGTAATGG
131 CCCCCCAATTTTTGTAAAGTCTAACTTCGTGCCTCAAATGAGACAAACATTGATTCTAGTAATGA
* * * * * * *
169134 CATTCATTCATTTTGTAATTAGGCACTATAAAAACATTCTTCACATTCGGATAAAGGATAATGAT
196 CCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAAGGATATTGAT
* * * * *
169199 GATTTTCTTCTGCATGGAAATATTTTCTTTGCCTTATTTACCTTAAAATTAAAGTTTATCCCTTA
261 GATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTACCTTAAAATCAAAGTTCATCCCTTA
* * * *
169264 AATAAGGCAAGCATCGATTCTTGTAACAGTTTCCATTCTTTTCAAGATTGGGAACTAAAAGCACA
326 AATAAGGCAAGCATCGATTCTCGTAACAGTCTCCATTCTTTTCAAGATTGGGAACCAAAAACACA
* * * *
169329 TTCCCTTCATTAAGATACATGACATTGATGCTTTGGAGATGCAAAAAGAGCATTTCTTACCACCG
391 TTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGATGCAAAAAAAGCTTTTCTTACCACCG
169394 TTTTTGATAGAATCAAAGTTT
456 TTTTTGATAGAATCAAAGTTT
* * * * *
169415 ATCTCTTAAATAAAAGAAACTAGAATAGTCATACTAATCCCTATTCTTTTCTGGATTAGGCACCA
1 GTCTCTTAAATAAGACAAACTAGAAGAGTCATACTAATCCCTATTCTTTTCAGGATTAGGCACCA
* * * * *
169480 TAAACGTAGTCTTCTCATAAAGATACACGATATTCATGTTTTGGTTTTGAATGAAAGGCTTTCTT
66 TAAACATAGTCTTCTCATAAGGATACACGATATTGATGCTTTGGTTTTGAAAGAAAGGCTTTCTT
*
169545 CCCCCCAATTTTTGTAAAGTCTAACTTCGTGCCTCAAATGAGACAAACATTGATTCTAGTAATGG
131 CCCCCCAATTTTTGTAAAGTCTAACTTCGTGCCTCAAATGAGACAAACATTGATTCTAGTAATGA
* * * * * *
169610 CCTTCATTCATTTTGTAATTAGGCACTATGAACACATTTTTCACATTAGGATAAAGGATAATGAT
196 CCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAAGGATATTGAT
* * * *
169675 GATTTTCTTTTGCATGAAAATCTTTTCTTTGCCTTATTTACGTTAAAATCAAAGTTCATCCCCTA
261 GATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTACCTTAAAATCAAAGTTCATCCCTTA
* * * * * *
169740 AATAAGGCAAGCATCGATTCTCGTAATAGTCTCTATTTTTTTCAAGATTGCGAAACACAAACACA
326 AATAAGGCAAGCATCGATTCTCGTAACAGTCTCCATTCTTTTCAAGATTGGGAACCAAAAACACA
** * *
169805 TTCTTTTCATTAGCG-TACATGACATTGATGCTTTGGTGATGCAAAATACA-CTTTTCCTACCAC
391 TTCCCTTCATTAG-GATACATGACATTGATGCTTTGGTGATGCAAAA-AAAGCTTTTCTTACCAC
* * * *
169868 CATTTTTTATGGAATCATAGTTT
454 CGTTTTTGATAGAATCAAAGTTT
* * * * *
169891 GTCT-TTCAAATAAGATAAACTAGAATAGTCATACTAATCCCTGTTCTTTTCTGGGTTAGGCACC
1 GTCTCTT-AAATAAGACAAACTAGAAGAGTCATACTAATCCCTATTCTTTTCAGGATTAGGCACC
* * * *
169955 ATAAACGTAGTCTTCTCATAAGGATACATGATATTCG-TGTTTTGGTTTTCAAAGAAAGGCTTTC
65 ATAAACATAGTCTTCTCATAAGGATACACGATATT-GATGCTTTGGTTTTGAAAGAAAGGCTTTC
* * * *
170019 TTCCCCACAATTTTTGCAAAGTCTAACTCCGTGCCTCAAACGAGACAAACATTGATTCTAGTAAT
129 TTCCCCCCAATTTTTGTAAAGTCTAACTTCGTGCCTCAAATGAGACAAACATTGATTCTAGTAAT
* * * * * * * * *
170084 GGCCTTCATTCATTTTTTAATTAGGCACTACAAACA-ATTCTACACATTAGGGTTAAGGATAATG
194 GACCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAAGGATATTG
* * *
170148 ATGATTTTCTTTTGCATGAAAATCTTTTCTTTGCACTATTTACCTTAAAATCAAAGTGCATCCCT
259 ATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTACCTTAAAATCAAAGTTCATCCCT
* ** * *
170213 TAAATAAGGTAAGCATCGATTCTCGTAACAGTCTCTGTTCTTTTCAAGATTAGGAACCAAAAATA
324 TAAATAAGGCAAGCATCGATTCTCGTAACAGTCTCCATTCTTTTCAAGATTGGGAACCAAAAACA
* * ***
170278 CATTCCCTTCATTAGGATACATGACGTTGATGCTTTGGTGATTCAAAAAAAGCTTTTCTTATTGC
389 CATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGATGCAAAAAAAGCTTTTCTTACCAC
*
170343 CATTTTTGATAGAATCAAAGTTT
454 CGTTTTTGATAGAATCAAAGTTT
** * * * *
170366 GTCTCTTAAATAAGGGAAAGTAGAATAGTCATACTAATCCCTGTTCTTTTCAGGATTGGGCACCA
1 GTCTCTTAAATAAGACAAACTAGAAGAGTCATACTAATCCCTATTCTTTTCAGGATTAGGCACCA
* * * *
170431 TAAACGTAGTCTTCTCATAAGGATACAAGATATTGATGTTTTGGTTTTGAAAGAAAGGCTTTTTT
66 TAAACATAGTCTTCTCATAAGGATACACGATATTGATGCTTTGGTTTTGAAAGAAAGGCTTTCTT
** * * **
170496 CCCCCCAATTTTTGTAAAGTCGGACTTTGTGCTTCAAATGAGACAAATTTTGATTCTAGTAACT-
131 CCCCCCAATTTTTGTAAAGTCTAACTTCGTGCCTCAAATGAGACAAACATTGATTCTAGTAA-TG
* * * * * *
170560 ATCTTAATTCATTTTGTGATTAGGCACTATAAACACAATCTCCTCATTAGGCTAAATGTTATTGA
195 ACCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAAGGATATTGA
*
170625 TGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTAACTTAAAATCAAAGTTCATCCCTT
260 TGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTACCTTAAAATCAAAGTTCATCCCTT
*
170690 AAATAAGGCAAGCATCGAATCTCGTAACAGTCTCCATTCTTTTCAAGATTGGGAACCAAAAACAC
325 AAATAAGGCAAGCATCGATTCTCGTAACAGTCTCCATTCTTTTCAAGATTGGGAACCAAAAACAC
* * * * *
170755 ATTCCCTTCAATAGGAAACATGACATTGATGCTATGGTGATGCAAAAAAAGATTTCCTTACCACC
390 ATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGATGCAAAAAAAGCTTTTCTTACCACC
*
170820 AGTTTTTGATGGAATCAAAGTTT
455 -GTTTTTGATAGAATCAAAGTTT
* * * ** *
170843 GTATCCTAAATAAGACAAAC-ATGAAGAGTCATAATAATCCCTATTCTTTTCATAATTAGGCCCC
1 GTCTCTTAAATAAGACAAACTA-GAAGAGTCATACTAATCCCTATTCTTTTCAGGATTAGGCACC
* * * * *
170907 ATAAACATACTATTCTCATAAGGATACACGATATTGATGCTTTGGTTTCGCAAGAAAGGCTTTTT
65 ATAAACATAGTCTTCTCATAAGGATACACGATATTGATGCTTTGGTTTTGAAAGAAAGGCTTTCT
** * * * * * *
170972 TTTCACCAATGTTTGTAAAGTCTCACTTCGAGCCTCAATTGAGACAAACATGGATTCTAGTAATG
130 TCCCCCCAATTTTTGTAAAGTCTAACTTCGTGCCTCAAATGAGACAAACATTGATTCTAGTAATG
* * *
171037 CCCTTCATTCATTTTGTGATTAGGCACTGTAAACACATTCTCCTTC-TTAGGATAAATGATATTG
195 ACCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCC-TCATTAGGATAAAGGATATTG
* * * * *
171101 ATGATTTTATTTTCCAAGGAAATATTTTCTTCGCCCTATTTACCTTAAAATCAAAGTTCATCCCT
259 ATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTACCTTAAAATCAAAGTTCATCCCT
* * * * *
171166 TAAA-AAGGGTAAGCATCGATTCTCGTAATAGTCTCCATTCCTATCAAGATTGGGAACC-ATAAC
324 TAAATAA-GGCAAGCATCGATTCTCGTAACAGTCTCCATTCTTTTCAAGATTGGGAACCAAAAAC
* * ** **
171229 ACATTCCCTTTATTTGGATACATGACATTGATGCTTTGGCAACACAAAAAAAGCTTTTCTTACCA
388 ACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGATGCAAAAAAAGCTTTTCTTACCA
** * *
171294 CTATTTTTGGTAGAATCGAAGTTT
453 CCGTTTTTGATAGAATCAAAGTTT
* * * * * * *
171318 GTCTCCTAAATAAGACAAACCAGAATAGTCATACTAATCCTTGTTCTTCTT-AGTATTATGCACC
1 GTCTCTTAAATAAGACAAACTAGAAGAGTCATACTAATCCCTATTCTT-TTCAGGATTAGGCACC
* * *
171382 ATAAACGTAGTCTTCTCACAAGGATACACGATATTGATGCTTTTGTTTTGAAAGAAAGGCTTTCT
65 ATAAACATAGTCTTCTCATAAGGATACACGATATTGATGCTTTGGTTTTGAAAGAAAGGCTTTCT
** * * * *
171447 T-CCCCCAATTTTTGTAAAGTCCGACTTCATGCCTTAAATGAGACAAACATTGATTTTAGTAATA
130 TCCCCCCAATTTTTGTAAAGTCTAACTTCGTGCCTCAAATGAGACAAACATTGATTCTAGTAATG
* * * * * * *
171511 ATCTTCACTCATTTTGTAATTTGGCACTATAAACAGATTCTCCTCATTAGGATAAATGTTATTGA
195 ACCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAAGGATATTGA
* * * *
171576 TGATTTTCCTTTGCAAGGAAATATTTTCTTTGCCTTATTTACCTTAAAATCAAAGTTCATCTCC-
260 TGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTACCTTAAAATCAAAGTTCATC-CCT
* * * *
171640 TAAACAAGGCAAGCATCGATTCTAGTAACAATCTCCATTCTTCTCAAGATT-GGAATCCAAAAAC
324 TAAATAAGGCAAGCATCGATTCTCGTAACAGTCTCCATTCTTTTCAAGATTGGGAA-CCAAAAAC
* * * * *
171704 ACATTCCCTTCATTAGGATACATGACATTGACGCTTTGGGGACGCAAAAAGAGCTTTTCCTACCA
388 ACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGATGCAAAAAAAGCTTTTCTTACCA
* **
171769 CAGCATTTGATAGAATCAAAGTTT
453 CCGTTTTTGATAGAATCAAAGTTT
* **
171793 GTCTCTTAAATAAGACAAAC-ATGAAGAGTCATACTAATCCCTATTCTTTTCAAGATTAGGTGCC
1 GTCTCTTAAATAAGACAAACTA-GAAGAGTCATACTAATCCCTATTCTTTTCAGGATTAGGCACC
* * * *
171857 ATAAACATAGTCTTCTCATAAAGATACACGATATTGATGCTTTGGTTTCGCAAA-AAAAGCTTTT
65 ATAAACATAGTCTTCTCATAAGGATACACGATATTGATGCTTTGGTTTTG-AAAGAAAGGCTTTC
* * * * * *
171921 TTCCCACAAATTTTTGTAAAGTCTGACTTCGAGCCTCAATTGAGACAAACATGGATTCTAGTAAT
129 TTCCCCCCAATTTTTGTAAAGTCTAACTTCGTGCCTCAAATGAGACAAACATTGATTCTAGTAAT
* * * * * *
171986 GCCCTTTCATTCATTTTGTGATTAGGCACTATAAACTCATTCTTCACATTAGGATAGAGGATAAT
194 GACC-TTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAAGGATATT
* *
172051 GATGATTTTCTTTTGCATGAAAATCTTTTCTTTGCCTTATTTACCTTAAAATCAAAGTTCATCCC
258 GATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTACCTTAAAATCAAAGTTCATCCC
* * * * * *
172116 TTAAATAAAGCAAGCATCAATTCTCGTAACAATCTCTATTCTTCTCAA-ATTTGGAACCAAAAAC
323 TTAAATAAGGCAAGCATCGATTCTCGTAACAGTCTCCATTCTTTTCAAGATTGGGAACCAAAAAC
* * * * * *
172180 ATATTCCCATCGTTACGTTACAAGACATTGATGCTTTGGTGATGCAAAAAAAGCTTTTCTTACCA
388 ACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGATGCAAAAAAAGCTTTTCTTACCA
*
172245 CTGTTTTTGATAGAATCAAAGTTT
453 CCGTTTTTGATAGAATCAAAGTTT
* * *
172269 GTCTCTTAAATGAGACAAA-TATGAAGAGTCATACTAATCCCAATTCTTTTCAGAATTAGGCACC
1 GTCTCTTAAATAAGACAAACTA-GAAGAGTCATACTAATCCCTATTCTTTTCAGGATTAGGCACC
* * * * * * *
172333 ATAAACATAGTATTCTCATAGGGATACATGATATTGATGCTTTGGTTTCGCAAGAAAAGCTTTTT
65 ATAAACATAGTCTTCTCATAAGGATACACGATATTGATGCTTTGGTTTTGAAAGAAAGGCTTTCT
** * * * *
172398 TCCCAACAATTTTTGTAAAGTTTTACTTCGTGCCTCAATTGAGACAAACATTGATTCTTGTAATG
130 TCCCCCCAATTTTTGTAAAGTCTAACTTCGTGCCTCAAATGAGACAAACATTGATTCTAGTAATG
* * * * *
172463 CCCTT-ATTTCATTTTGTAATTAGGCACTATAAACACATTCTTCACATTAGGATAAAGGATAATG
195 ACCTTCA-TTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAAGGATATTG
* * *
172527 ATGATTTTCTTTTGCATTGGAAAACTTTTCTTTGCCCTATTTACCTTAGAATCAAAGTTCATCTC
259 ATGATTTTCTTTTGCA-TGGAAATCTTTTCTTTGCCCTATTTACCTTAAAATCAAAGTTCATCCC
* * * * * *
172592 TTAAAAAAGGTAAGCATCGACTCTCGTAATAGTCTCCATTCATTTCAAGATTGGGAACC-AAAGC
323 TTAAATAAGGCAAGCATCGATTCTCGTAACAGTCTCCATTCTTTTCAAGATTGGGAACCAAAAAC
* * *
172656 ACATTCCCTTCCTTAGGATACAAGACATTGATGCTATGGTGATGCAAAAAAAGCTTTTCTTACCA
388 ACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGATGCAAAAAAAGCTTTTCTTACCA
* *
172721 CCGTTTTTTATGGAATCAAAGTTT
453 CCGTTTTTGATAGAATCAAAGTTT
172745 GTCTCTTAAATAAGACAAAC-ATGAAGAGTCATACTAATCCCTATTCTTTTCACGG-TTAGGCAC
1 GTCTCTTAAATAAGACAAACTA-GAAGAGTCATACTAATCCCTATTCTTTTCA-GGATTAGGCAC
* ** *
172808 CATAAACATAGTCTTCTCATAAAAGGATACACGATATTAACACTTTGGTTTTGAAAGAAAAGCTT
64 CATAAACATAGTCTTCTCAT--AAGGATACACGATATTGATGCTTTGGTTTTGAAAGAAAGGCTT
* * * *
172873 TCTTCCCCCTAATTTTTGTAAAGTCTTATTTCGTGCCTTAAATGAGACAAACATTGATTCTAGTA
127 TCTTCCCCCCAATTTTTGTAAAGTCTAACTTCGTGCCTCAAATGAGACAAACATTGATTCTAGTA
* * * * * *
172938 ATGATCTTCATTCCTTTTGTGATTAGGCGCTACAAACACATTCTCCTCATTAGGATAAATGTTAT
192 ATGACCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAAGGATAT
*
173003 TGATGATTTTCTTTTGCATTGGAAATCTTCTCTTTGCCCTATTTACCTTAAAATCAAAGTTCATC
257 TGATGATTTTCTTTTGCA-TGGAAATCTTTTCTTTGCCCTATTTACCTTAAAATCAAAGTTCATC
* ** * * *
173068 CCTTAAATAAGGCTAGCATCGATTCTCAAAATAGTCTCCATTCCTTTCAAGATTAGGAACCAAAA
321 CCTTAAATAAGGCAAGCATCGATTCTCGTAACAGTCTCCATTCTTTTCAAGATTGGGAACCAAAA
* * * * * *
173133 ACACATTCCCTTCATTAGGATATACGACATTTATACTTTGGTGACGCAAAAAAAGCAGTTTCTTA
386 ACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGATGCAAAAAAAGC-TTTTCTTA
173198 CCACCGTTTTTGATAGAATCAAAGTTT
450 CCACCGTTTTTGATAGAATCAAAGTTT
* * * * * *
173225 ATGTCTTAAATAAGAGAAACTAGAATAGTCATACTAATCCCTGTTCTTTTCAAGATTAGGCACCA
1 GTCTCTTAAATAAGACAAACTAGAAGAGTCATACTAATCCCTATTCTTTTCAGGATTAGGCACCA
** * * *
173290 TAAAGGTAGTCTTTTCATAAGGATACACGATATTAATGCTTTGGTTTTGAAAGAAAGGCTTTCCT
66 TAAACATAGTCTTCTCATAAGGATACACGATATTGATGCTTTGGTTTTGAAAGAAAGGCTTTCTT
** ** * * * *
173355 CCCCTTAATTTTTGTAAAGT-TTGCTTCATGCCTTAAATGAGACAAACATTGATTCAAGTAAAGA
131 CCCCCCAATTTTTGTAAAGTCTAACTTCGTGCCTCAAATGAGACAAACATTGATTCTAGTAATGA
* * * * *
173419 ACTTCATTCATTTTGGGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGTTATTAAT
196 CCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAAGGATATTGAT
*
173484 GATTTTTTTTTTTTTGCATGGAAATCTTTTCTTTGCCCTATTTACCTTAAAATCAAAGTTCATCC
261 GA----TTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTACCTTAAAATCAAAGTTCATCC
* ** *
173549 CTCAAATAAGGTGAGCATCGA-TCTCGTAACAGTCTCCATTCTTTTCAAGATTGGGAATCAAAAA
322 CTTAAATAAGGCAAGCATCGATTCTCGTAACAGTCTCCATTCTTTTCAAGATTGGGAACCAAAAA
* * * * * * *
173613 CACAATCCCTTAATTAGGATACGTGACGTTGATGCTTTGGTGACGCAAAAAAAAACGTTTCTTAC
387 CACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGATGC-AAAAAAAGCTTTTCTTAC
* *
173678 CGCCATTTTTGATAGAATCAAAGTTT
451 CACCGTTTTTGATAGAATCAAAGTTT
* * *
173704 GTCTCTTAAATAA-AGGAAACTAGAATAGTCATAGTAATCCCTATTCTTTTCAGGATTAGGCACC
1 GTCTCTTAAATAAGA-CAAACTAGAAGAGTCATACTAATCCCTATTCTTTTCAGGATTAGGCACC
*
173768 ATAAACATAGTCTTCTCATAAGGATACACGATATTGATGCTTTGGTTTTGAAAGAAAGGCTTTTT
65 ATAAACATAGTCTTCTCATAAGGATACACGATATTGATGCTTTGGTTTTGAAAGAAAGGCTTTCT
* * * ** * *
173833 TCCTCCTAATTTTTGTAAAGTCTGACTTTATGCCTTAAATGAGATAAACTATTGATTCTAGTAAT
130 TCCCCCCAATTTTTGTAAAGTCTAACTTCGTGCCTCAAATGAGACAAAC-ATTGATTCTAGTAAT
* * * * *
173898 TATCTTCATTCATTTTGTGATTA-GCTACTACAAACACAATCTCCTCATTAGGATAAA-TATTAT
194 GACCTTCATTCATTTTGTGATTAGGC-ACTATAAACACATTCTCCTCATTAGGATAAAGGA-TAT
* * *
173961 TGATAATTTTCTTTTGCATGGAAATATTTTCTTTGCCCTATTTACCTTAAAACCAAAGTTCATCC
257 TGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTACCTTAAAATCAAAGTTCATCC
* * * *
174026 CTTAAATAAGGGAAGCATCGATTCTCGTAACAATCTCTATTCTTCTCAAGATTAGGG-ACCAAAA
322 CTTAAATAAGGCAAGCATCGATTCTCGTAACAGTCTCCATTCTTTTCAAGATT-GGGAACCAAAA
* * * *
174090 ACACATT-CCTTCATTACGTTACAAGACATTGATGCTTTGGTGATGCGAAAAAAGCTTTTCTTAC
386 ACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGATGCAAAAAAAGCTTTTCTTAC
** *
174154 CATTGTTTTTTATAGAATCAAAGTTT
451 CACCGTTTTTGATAGAATCAAAGTTT
* * * *
174180 GTCTCTTAAATAAGACAAAC-ATGAAGAGTCATAATAATCCCTCTTCTTTTCATGATTAGGCAGC
1 GTCTCTTAAATAAGACAAACTA-GAAGAGTCATACTAATCCCTATTCTTTTCAGGATTAGGCACC
* * * * * *
174244 ATAAACATAGTCCTCTCTTAAGGATACACAACATTGATGCTTTGGTTTTGCAAA-AAAAGCTTTT
65 ATAAACATAGTCTTCTCATAAGGATACACGATATTGATGCTTTGGTTTTG-AAAGAAAGGCTTTC
** * * * * *
174308 TTCCCAGCAATTTTTGTAAAGTTTGACTTCGTGCCTCAATTGAGACAAACATGGATTCTTGTAAT
129 TTCCCCCCAATTTTTGTAAAGTCTAACTTCGTGCCTCAAATGAGACAAACATTGATTCTAGTAAT
* * * * * *
174373 GCCCTTCTTTCATTTTGTGATTAGGTACTATAAACACATTCTTCACATTAGGATAAAGGATAATG
194 GACCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAAGGATATTG
* * * * * *
174438 ATGACTTTCTTTTGCTTGAAAATCTTTTGTTTGCCTTATTTACCTTAAAATTAAAGTTCATCCCT
259 ATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTACCTTAAAATCAAAGTTCATCCCT
* * * * * * *
174503 TAAATAAGGCAAGCGTTGAATCTCGTAATAGTCTCCATTCTTCTCAATATTAGGAACCAAAAACA
324 TAAATAAGGCAAGCATCGATTCTCGTAACAGTCTCCATTCTTTTCAAGATTGGGAACCAAAAACA
** * * * *
174568 CATTCTTTTTATTAGGATACATGACATTGATGCTATGGTGATGGAAAAAAAGCTTTTCTTACCAT
389 CATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGATGCAAAAAAAGCTTTTCTTACCAC
*
174633 CGTTTTTGATACAATCAAAGTTT
454 CGTTTTTGATAGAATCAAAGTTT
* * * * *
174656 GCCTCTTTAATAAGACAAAC-ATGAAGAGTCATACT-ATTCCTATTCTTTTCAAGATTAGGCCCC
1 GTCTCTTAAATAAGACAAACTA-GAAGAGTCATACTAATCCCTATTCTTTTCAGGATTAGGCACC
* * * * *
174719 ATAAACATAGCCTTCTCATAAGGATACACGATATTGATGCTTTAGTTTCGCAAGAAAAGCTTAT-
65 ATAAACATAGTCTTCTCATAAGGATACACGATATTGATGCTTTGGTTTTGAAAGAAAGGCTT-TC
* * * * *
174783 TTCCCACCAATTTTTGTAAAGTCTGACTTCGAGCCTCAATTGAGACAAACATGGATTCTAGTAAT
129 TTCCCCCCAATTTTTGTAAAGTCTAACTTCGTGCCTCAAATGAGACAAACATTGATTCTAGTAAT
* * * * * * * * *
174848 GCCCTTAATTCATTTTGTGCTTAGGCAATATAAACTCATTCTTCACATTACGATAAAGGATAATG
194 GACCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAAGGATATTG
* * *
174913 ATGATTTTTTTTTGCATGGAAATCTTTTCTTTGTCTTATTTACCTTAAAATCAAAGTTCATCCCT
259 ATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTACCTTAAAATCAAAGTTCATCCCT
* * *
174978 TAAATAAGGCAAGCATCGATTCTC-TAAACAGTCTCCATTCTTTTCAAGATTAGAAACTAAAAAC
324 TAAATAAGGCAAGCATCGATTCTCGT-AACAGTCTCCATTCTTTTCAAGATTGGGAACCAAAAAC
* * * **
175042 ACGTTCCCTTCATTAGGATACAAGGCATTGATGCTTTGGTGACACAAAAAAAGCTTTTCTTACCA
388 ACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGATGCAAAAAAAGCTTTTCTTACCA
* *
175107 CCG-TTTTCATAAAATCAAAGTTT
453 CCGTTTTTGATAGAATCAAAGTTT
*
175130 GTCTCTTAAATAAGACAAAC-ATGAAGAGTCATACTAATCCCTATTCTTTTCAAGATTAGGCACC
1 GTCTCTTAAATAAGACAAACTA-GAAGAGTCATACTAATCCCTATTCTTTTCAGGATTAGGCACC
** * * * *
175194 ATAAACATAGTCTTCTCATAAGGATACTTGATATTGATGCTTTGGTTTCGCAAGAAAAGCTTTTT
65 ATAAACATAGTCTTCTCATAAGGATACACGATATTGATGCTTTGGTTTTGAAAGAAAGGCTTTCT
* * * * * * *
175259 TCCCACCAATTTTTGTAAAGTTTGACTTCGTGTCTCAATTGAGACAAACATGGGTTCTAGTAATG
130 TCCCCCCAATTTTTGTAAAGTCTAACTTCGTGCCTCAAATGAGACAAACATTGATTCTAGTAATG
* * * * *
175324 CCCTT-ATTTCATTTTGTGATTAGGCACTATAAACACAATCTTCACATTAGGATAAAGGATAATG
195 ACCTTCA-TTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAAGGATATTG
* * * *
175388 ATGATTTTCTTTTGCATGAAAATATTTTGTTTGCCTTATTTACCTTAAAATCAAAGCTT-ATCCC
259 ATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTACCTTAAAATCAAAG-TTCATCCC
* *
175452 TTAAATAAGGCAAGCATTGATTCTCGTAACAGTCTCCATTCTTTTCAATATTGGGAACCAAAAAC
323 TTAAATAAGGCAAGCATCGATTCTCGTAACAGTCTCCATTCTTTTCAAGATTGGGAACCAAAAAC
* * ** * * *
175517 ACATTCCCTTCATTAGGATACAGGACATTAACACTATGGTCATGCAAAAAAGGCTTTTCTTACCA
388 ACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGATGCAAAAAAAGCTTTTCTTACCA
* * *
175582 CCATTTTTGATAAAATCGAAGTTT
453 CCGTTTTTGATAGAATCAAAGTTT
* *
175606 GTCTCTTAAATAAGACAAAC-ATGAAGAGTCATCCTAATCCCTATTCTTTTCACGATTAGGCACC
1 GTCTCTTAAATAAGACAAACTA-GAAGAGTCATACTAATCCCTATTCTTTTCAGGATTAGGCACC
* * * *
175670 ATAAACATAGTCTTCTCTTAAGGATGCACGATATTAATGCCTTGGTTTTGAAAGAAAGGCTTTCT
65 ATAAACATAGTCTTCTCATAAGGATACACGATATTGATGCTTTGGTTTTGAAAGAAAGGCTTTCT
*
175735 TCCCCCCAATTTTTGTAAAGTCTTACTTCGTGCCTCAAATGAGACAAACATTGATTCTAGTAATG
130 TCCCCCCAATTTTTGTAAAGTCTAACTTCGTGCCTCAAATGAGACAAACATTGATTCTAGTAATG
* * * * *
175800 ATCTTCAATCATTTTGTGATTAGGCACTACAAACACATTCT-CTCGATTAGGATAAATGTTATTG
195 ACCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTC-ATTAGGATAAAGGATATTG
* * *
175864 ATGATTTTCTTTTGCATTGGAAAACTTTTCTTTGCCCTATTTACCTTAGAATCAAAGTTCATCTC
259 ATGATTTTCTTTTGCA-TGGAAATCTTTTCTTTGCCCTATTTACCTTAAAATCAAAGTTCATCCC
* * * * *
175929 TGAAAAAAGGCAAGCATTGATTCTCGTAACAGTCACCATTCATTTCAAGATTGGGAACCAAAAAC
323 TTAAATAAGGCAAGCATCGATTCTCGTAACAGTCTCCATTCTTTTCAAGATTGGGAACCAAAAAC
* * * *
175994 ACATTCCCTTCCTTAGGATACAAGACATTGATGCTATGGTGATGCAAAAAAAGTTTTTCTTACCA
388 ACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGATGCAAAAAAAGCTTTTCTTACCA
*
176059 CCATTTTTGATAGAATCAAAGTTT
453 CCGTTTTTGATAGAATCAAAGTTT
* * * *
176083 ATCTCTTAAATAAGACAAAAT-GAAGAGTCATACTAGTGCCTATTCTTTTCACGG-TTAGGCACC
1 GTCTCTTAAATAAGACAAACTAGAAGAGTCATACTAATCCCTATTCTTTTCA-GGATTAGGCACC
* * ***
176146 ATAAACATAGTCTTCTCATAAAAGAATACACGATATTAACAATTTGGTTTTGAAAGAACA-GCTT
65 ATAAACATAGTCTTCTCAT--AAGGATACACGATATTGATGCTTTGGTTTTGAAAGAA-AGGCTT
* * *
176210 TCTTCCCCCCAATTTTTGTAAAGTCTTATTTCATGCCTCAAATGAGACAAACATTGATTCTAGTA
127 TCTTCCCCCCAATTTTTGTAAAGTCTAACTTCGTGCCTCAAATGAGACAAACATTGATTCTAGTA
* * * * *
176275 ATGATCTTCATTCCTTTTGTGATTAGGCACTACAAACACATTCTCCTCATTAGGATAAATGTTAT
192 ATGACCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAAGGATAT
*
176340 TGATGATTTTCTTTTGCACTGGAAATCTTCTCTTTGCCCTATTTACCTTAAAATCAAAGTTCATC
257 TGATGATTTTCTTTTGCA-TGGAAATCTTTTCTTTGCCCTATTTACCTTAAAATCAAAGTTCATC
* * * *
176405 CCTTAAATAAGGCTAGCATC-ATTCTCATAATAGTCTCCATTCTTTTCAAGATTAGGAACCAAAA
321 CCTTAAATAAGGCAAGCATCGATTCTCGTAACAGTCTCCATTCTTTTCAAGATTGGGAACCAAAA
* * * * * * * *
176469 ACACATTTCCTTTATTCGGATATACGACATTTATACTTTGGTGATGC-AAAAAAGCTTTGCTTAC
386 ACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGATGCAAAAAAAGCTTTTCTTAC
*
176533 TACCGTTTTTGATAGAATCAAAGTTT
451 CACCGTTTTTGATAGAATCAAAGTTT
* * * * * *
176559 ATGTCTTAAATAAGAGAAACTAGAATAGTCATACTAATCCCTGTTCTTTTCAAGATTAGGCACCA
1 GTCTCTTAAATAAGACAAACTAGAAGAGTCATACTAATCCCTATTCTTTTCAGGATTAGGCACCA
** * * *
176624 TAAAGGTTGTCTTCTCATAA-GATACACGATATTAATGTTTTGGTTTTGAAAGAAAGGCTTTCTT
66 TAAACATAGTCTTCTCATAAGGATACACGATATTGATGCTTTGGTTTTGAAAGAAAGGCTTTCTT
* * ** * * * * *
176688 CGCCCAAATTTTTGTAAAGT-TTGCTTCATGCCTTAAATGAGACAAACATTTATTCAAGTAAAGA
131 CCCCCCAATTTTTGTAAAGTCTAACTTCGTGCCTCAAATGAGACAAACATTGATTCTAGTAATGA
* * * * * *
176752 ACTTCATTCATTTTGGGATTATGCACTATAAACACATTCTCCTTATTAGGATAAATGTTATTGAT
196 CCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAAGGATATTGAT
* * *
176817 GATTTTTTTTTGCATGGAAATTTTTTCTTTGCCCTATTTACCTTAAAATCAAAGTTCATCCCTCA
261 GATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTACCTTAAAATCAAAGTTCATCCCTTA
* * *
176882 AATAAGGCGAGCATCGA-TCTCGTAACAGTCTCCATTCTTTTCAAAATTGGGAATCAAAAACACA
326 AATAAGGCAAGCATCGATTCTCGTAACAGTCTCCATTCTTTTCAAGATTGGGAACCAAAAACACA
* * * * * * * *
176946 ATCCCTTAATTAGGATACATGACATTGATTCTTTGGTGACGCAAAAAAAACGTTTCTTACCGCCA
391 TTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGATGCAAAAAAAGCTTTTCTTACCACCG
*
177011 TTTTTGATAGAATTAAAGTTT
456 TTTTTGATAGAATCAAAGTTT
* ** * * *
177032 GTCTCTTAAGTAAGGGAAACTAGAATAGTCATAGTAATCCCTGTTCTTTTCAGGATTAGGCACCA
1 GTCTCTTAAATAAGACAAACTAGAAGAGTCATACTAATCCCTATTCTTTTCAGGATTAGGCACCA
*
177097 TAAACATAGTCTTCTCATAAGGATACACGATATTGATGCTTTGGTTTTGAAAGAAAGGCTTTTTT
66 TAAACATAGTCTTCTCATAAGGATACACGATATTGATGCTTTGGTTTTGAAAGAAAGGCTTTCTT
* * * * *
177162 CCCCCTAATTTTTGTAAAGTCTAACTTTGTGCCTTAAATAAGACAAACATTGATTCTAGTAATTA
131 CCCCCCAATTTTTGTAAAGTCTAACTTCGTGCCTCAAATGAGACAAACATTGATTCTAGTAATGA
* * * *
177227 TCTTCATTCATTTTGTGATTAGGTACTATAAACACAATCTCCTCATTAGGATAAA-TATTATTGA
196 CCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAAGGA-TATTGA
* * *
177291 TAATTTTCTTTTGCATGGAAATATTTTCTTTGCCCTATTTACCTTAAAACCAAAGTTCATCCCTT
260 TGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTACCTTAAAATCAAAGTTCATCCCTT
* * * * *
177356 AAATAAGGTAAGCATCGATTCTCGTAACAATCTCTATTCTTCTCAAGATTAGGAACCAAAAACAC
325 AAATAAGGCAAGCATCGATTCTCGTAACAGTCTCCATTCTTTTCAAGATTGGGAACCAAAAACAC
* * * * * *
177421 ATTCCCTTCATTACGTTACAAGACATTGATGCTTTGGTGATGCAAAAAAAGCTTTTCTTTCCGCT
390 ATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGATGCAAAAAAAGCTTTTCTTACCACC
*
177486 GTTTTTTATAGAATCAAAGTTT
455 GTTTTTGATAGAATCAAAGTTT
* * * * *
177508 GTCTCTTAAATAAGACAAA-GATGAAGCGTCATAATAATCCCTATTCTTTTCATGATTAGGCAGC
1 GTCTCTTAAATAAGACAAACTA-GAAGAGTCATACTAATCCCTATTCTTTTCAGGATTAGGCACC
* * * * **
177572 ATAAACATAGTCTTCTCTTAAGGATACACGACATTGATGCTTTGGTTTCGCAAGAAAAACTATT-
65 ATAAACATAGTCTTCTCATAAGGATACACGATATTGATGCTTTGGTTTTGAAAGAAAGGCT-TTC
* * * * *
177636 TTTCCACCAATTTTTGTAAAGTCTAGCTTCGTGCCTCAAATGAGACAAA-ATGGATTCTAGTAAC
129 TTCCCCCCAATTTTTGTAAAGTCTAACTTCGTGCCTCAAATGAGACAAACATTGATTCTAGTAAT
* * * * *
177700 AATCTTCATTCA-TTTGTGATTAGGCACTGTAAACACATTCTCCTCCTTAGGATAAATGATATTG
194 GACCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAAGGATATTG
* * * *
177764 ATGATTTTATTTTGCATGAAAATATTTTCTTTGCCCTATTTACCTTAAAATCAAAGTTCATCGCT
259 ATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTACCTTAAAATCAAAGTTCATCCCT
* * * *
177829 TAAAT-AGAGCAAGCATCGATTCTCATAATAGTCACCATTCTTTTCAAGATTCGGAACCAAAAAC
324 TAAATAAG-GCAAGCATCGATTCTCGTAACAGTCTCCATTCTTTTCAAGATTGGGAACCAAAAAC
* * * *
177893 ACATTCCCTTCATGAGGATACATGGCATTGATGCTTTGGGGATGCAAAAAAAGCTTTGCTTACCA
388 ACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGATGCAAAAAAAGCTTTTCTTACCA
** *
177958 CTATTTTTGATAGAATCAATGTTT
453 CCGTTTTTGATAGAATCAAAGTTT
* ** ** ** *
177982 GTCTCCTAAATAAGATGAACCGGATTAGTCATACTAATCCCTGTTCTTTTCAGGATTAGGCACCA
1 GTCTCTTAAATAAGACAAACTAGAAGAGTCATACTAATCCCTATTCTTTTCAGGATTAGGCACCA
** * *
178047 TAAACGCAATCTTCTCATAAGGATACACAATATTGATGCCTTT-GTTTT----GAAA----TTCT
66 TAAACATAGTCTTCTCATAAGGATACACGATATTGATG-CTTTGGTTTTGAAAGAAAGGCTTTCT
* * * * *
178103 T-CCCCTAATTTTTGTAAAGACTCACTTCGTGCCTCAAATGAGACAAACATTGATTCGAGTAATA
130 TCCCCCCAATTTTTGTAAAGTCTAACTTCGTGCCTCAAATGAGACAAACATTGATTCTAGTAATG
* * * *
178167 ATCTTCATTCATTTTGTAATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGTTATTGA
195 ACCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAAGGATATTGA
* * *
178232 TGATTTTCTTTTGCATGGAAATATTTTATTTGCCTTATTTACCTTAAAATCAAAGTTCATCCCTT
260 TGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTACCTTAAAATCAAAGTTCATCCCTT
* * *
178297 AAATAAGGCAAGCATCGATTCTCGTAACAGTTTCTATTCTTTTCAAAATTGGGAACCAAAAACAC
325 AAATAAGGCAAGCATCGATTCTCGTAACAGTCTCCATTCTTTTCAAGATTGGGAACCAAAAACAC
* * * * * * * **
178362 ATTACTTTCATTTGGATACATGACGTTGATACTTTGGAGATGCAAAAAGAGCTTTTCTTACCATA
390 ATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGATGCAAAAAAAGCTTTTCTTACCACC
* *
178427 GCTTTTGATAGAATCATAGTTT
455 GTTTTTGATAGAATCAAAGTTT
* *
178449 GTCTCTTAAATAAGACAAAC-ATGAAGAGTCATACTAATCCCTATTCTTTTCAAGATTAGGCATC
1 GTCTCTTAAATAAGACAAACTA-GAAGAGTCATACTAATCCCTATTCTTTTCAGGATTAGGCACC
* * * * * * *
178513 GTAAACATAGTCTTATCATAAGGATACATGATATTGATGC--TGGTTTCGTAAGAAAGGTTTTTT
65 ATAAACATAGTCTTCTCATAAGGATACACGATATTGATGCTTTGGTTTTGAAAGAAAGGCTTTCT
** * * * * * * **
178576 TTTCACCAATTTTTGTAAAGTCCAACTTCATGCCTTAAATGAGACAAAAATGGATTCTAGTAACA
130 TCCCCCCAATTTTTGTAAAGTCTAACTTCGTGCCTCAAATGAGACAAACATTGATTCTAGTAATG
* * * * *
178641 ATCTTCATTCA-TTTGTGATTAGGCACTGTAAACACATTTTCCTCCTTAGGATAAATGATATTGA
195 ACCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAAGGATATTGA
* *
178705 TGCTTTGCTTT
260 TGATTTTCTTT
178716 CACAAGAAAA
Statistics
Matches: 8557, Mismatches: 1106, Indels: 229
0.87 0.11 0.02
Matches are distributed among these distances:
464 1 0.00
465 47 0.01
466 27 0.00
467 321 0.04
468 2 0.00
469 4 0.00
470 4 0.00
472 137 0.02
473 293 0.03
474 772 0.09
475 2341 0.27
476 2384 0.28
477 1045 0.12
478 596 0.07
479 303 0.04
480 199 0.02
481 81 0.01
ACGTcount: A:0.32, C:0.19, G:0.14, T:0.35
Consensus pattern (476 bp):
GTCTCTTAAATAAGACAAACTAGAAGAGTCATACTAATCCCTATTCTTTTCAGGATTAGGCACCA
TAAACATAGTCTTCTCATAAGGATACACGATATTGATGCTTTGGTTTTGAAAGAAAGGCTTTCTT
CCCCCCAATTTTTGTAAAGTCTAACTTCGTGCCTCAAATGAGACAAACATTGATTCTAGTAATGA
CCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAAGGATATTGAT
GATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTACCTTAAAATCAAAGTTCATCCCTTA
AATAAGGCAAGCATCGATTCTCGTAACAGTCTCCATTCTTTTCAAGATTGGGAACCAAAAACACA
TTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGATGCAAAAAAAGCTTTTCTTACCACCG
TTTTTGATAGAATCAAAGTTT
Found at i:170144 original size:951 final size:951
Alignment explanation
Indices: 168464--178715 Score: 12705
Period size: 951 Copynumber: 10.8 Consensus size: 951
168454 GATCCTAATA
*
168464 GTCTCTTAAATAAGAGAAACTAGAATAGTCATACTAATCCCTGTTCTTTTCAGGATTTGGCACCA
1 GTCTCTTAAATAAGAGAAACTAGAATAGTCATACTAATCCCTGTTCTTTTCAGGATTAGGCACCA
* * *
168529 TAAATGTGGTCTTCTCATAAGGATACACGATATTCATGCTTTGGTTTTGAAAGAAAGGCTTTCTT
66 TAAACGTAGTCTTCTCATAAGGATACACGATATTGATGCTTTGGTTTTGAAAGAAAGGCTTTCTT
* * * * *
168594 CCCCCCAACTTTTGTAAAGTCTAACATCGTGCCTCAAACGAGACAAACATTGATTCTAGTAATGG
131 CCCCCCAATTTTTGTAAAGTCTGACTTCGTGCCTCAAATGAGACAAACATTGATTCTAGTAATGA
* * * * * *
168659 CCTTCATTCATTTTTTAACTAGGCACTTTAAACACATTCTTCACATTAGGATAAAGGATAATGAT
196 CCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAAGGATAATGAT
*
168724 GATTTTCTTTTGCATGGAAATCTTTTCTTTGCCTTATTTACATTAAAATCAAAGTTCATCCCTTA
261 GATTTTCTTTTGCATGGAAATCTTTTCTTTGCCTTATTTACCTTAAAATCAAAGTTCATCCCTTA
* *
168789 AATAAGCCAAGCATCGATTCTCGTAACAGTCTCCATTCTTTTCAAGATTGGGAAACAAAAACACA
326 AATAAGGCAAGCATCGATTCTCGTAACAGTCTCCATTCTTTTCAAGATT-GGAACCAAAAACACA
* * * * * *
168854 TTCCTTTCATTAGTG-TACATGACATTGATGCTTTGGTGACGCAAAATACGCTTTTCCTACCACT
390 TTCCCTTCATTAG-GATACATGACATTGATGCTTTGGTGATGCAAAAAAAGCTTTTCTTACCACC
* * * * * * *
168918 GTTTTTGATAGAATCAAAGTTTGTTTCTTAAATAAGAGAAAC-TAGAATAATCAAACAAATCCCT
454 ATTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACAT-GAAGAGTCATACTAATCCCT
* * * *
168982 ATTCTTTTCAAGACTAGGCACCATAAACGTAGTCTTCTCATAAGAATACACGATATTCATGCTTT
518 ATTCTTTTCAAGATTAGGCACCATAAACATAGTCTTCTCATAAGGATACACGATATTGATGCTTT
* * * * * *
169047 GG-TTTGAAAGAAAGGCTTTCTTCCCCCCAATTTTTGTAGAGTCTAACATCATGCCTCAAACGAG
583 GGTTTTCAAAGAAAGGCTTTCTTCCCCACAATTTTTGTAAAGTCTAACTTCGTGCCTCAAATGAG
* * * * *
169111 ACAAACATTGATTCTAGTAATGGCATTCATTCATTTTGTAATTAGGCACTATAAAAACATTCTTC
648 ACAAACATTGATTCTAGTAATGACCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCC
* * * * * *
169176 ACATTCGGATAAAGGATAATGATGATTTTCTTCTGCATGGAAATATTTTCTTTGCCTTATTTACC
713 TCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGGAAATATTTTCTTTGCCCTATTTACC
* * * *
169241 TTAAAATTAAAGTTTATCCCTTAAATAAGGCAAGCATCGATTCTTGTAACAGTTTCCATTCTTTT
778 TTAAAATCAAAGTTCATCCCTTAAATAAGGCAAGCATCGATTCTCGTAACAGTCTCCATTCTTTT
* * * *
169306 CAAGATTGGGAACTAAAAGCACATTCCCTTCATTAAGATACATGACATTGATGCTTTGGAGATGC
843 CAAGATTGGGAACCAAAAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGATGC
* * *
169371 AAAAAGAGCATTTCTTACCACCGTTTTTGATAGAATCAAAGTTT
908 AAAAAAAGCTTTTCTTACCACCATTTTTGATAGAATCAAAGTTT
* * * *
169415 ATCTCTTAAATAAAAGAAACTAGAATAGTCATACTAATCCCTATTCTTTTCTGGATTAGGCACCA
1 GTCTCTTAAATAAGAGAAACTAGAATAGTCATACTAATCCCTGTTCTTTTCAGGATTAGGCACCA
* * * *
169480 TAAACGTAGTCTTCTCATAAAGATACACGATATTCATGTTTTGGTTTTGAATGAAAGGCTTTCTT
66 TAAACGTAGTCTTCTCATAAGGATACACGATATTGATGCTTTGGTTTTGAAAGAAAGGCTTTCTT
* *
169545 CCCCCCAATTTTTGTAAAGTCTAACTTCGTGCCTCAAATGAGACAAACATTGATTCTAGTAATGG
131 CCCCCCAATTTTTGTAAAGTCTGACTTCGTGCCTCAAATGAGACAAACATTGATTCTAGTAATGA
* * * * *
169610 CCTTCATTCATTTTGTAATTAGGCACTATGAACACATTTTTCACATTAGGATAAAGGATAATGAT
196 CCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAAGGATAATGAT
* * *
169675 GATTTTCTTTTGCATGAAAATCTTTTCTTTGCCTTATTTACGTTAAAATCAAAGTTCATCCCCTA
261 GATTTTCTTTTGCATGGAAATCTTTTCTTTGCCTTATTTACCTTAAAATCAAAGTTCATCCCTTA
* * * * *
169740 AATAAGGCAAGCATCGATTCTCGTAATAGTCTCTATTTTTTTCAAGATTGCGAAACACAAACACA
326 AATAAGGCAAGCATCGATTCTCGTAACAGTCTCCATTCTTTTCAAGATTG-GAACCAAAAACACA
** * *
169805 TTCTTTTCATTAGCG-TACATGACATTGATGCTTTGGTGATGCAAAATACA-CTTTTCCTACCAC
390 TTCCCTTCATTAG-GATACATGACATTGATGCTTTGGTGATGCAAAA-AAAGCTTTTCTTACCAC
* * * * *
169868 CATTTTTTATGGAATCATAGTTTGTCT-TTCAAATAAGATAAAC-TAGAATAGTCATACTAATCC
453 CATTTTTGATAGAATCAAAGTTTGTCTCTT-AAATAAGACAAACAT-GAAGAGTCATACTAATCC
* ** * * * *
169931 CTGTTCTTTTCTGGGTTAGGCACCATAAACGTAGTCTTCTCATAAGGATACATGATATTCG-TGT
516 CTATTCTTTTCAAGATTAGGCACCATAAACATAGTCTTCTCATAAGGATACACGATATT-GATGC
* * *
169995 TTTGGTTTTCAAAGAAAGGCTTTCTTCCCCACAATTTTTGCAAAGTCTAACTCCGTGCCTCAAAC
580 TTTGGTTTTCAAAGAAAGGCTTTCTTCCCCACAATTTTTGTAAAGTCTAACTTCGTGCCTCAAAT
* * * *
170060 GAGACAAACATTGATTCTAGTAATGGCCTTCATTCATTTTTTAATTAGGCACTACAAACA-ATTC
645 GAGACAAACATTGATTCTAGTAATGACCTTCATTCATTTTGTGATTAGGCACTATAAACACATTC
* * * * * * * * *
170124 TACACATTAGGGTTAAGGATAATGATGATTTTCTTTTGCATGAAAATCTTTTCTTTGCACTATTT
710 TCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGGAAATATTTTCTTTGCCCTATTT
* * **
170189 ACCTTAAAATCAAAGTGCATCCCTTAAATAAGGTAAGCATCGATTCTCGTAACAGTCTCTGTTCT
775 ACCTTAAAATCAAAGTTCATCCCTTAAATAAGGCAAGCATCGATTCTCGTAACAGTCTCCATTCT
* * *
170254 TTTCAAGATTAGGAACCAAAAATACATTCCCTTCATTAGGATACATGACGTTGATGCTTTGGTGA
840 TTTCAAGATTGGGAACCAAAAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGA
* ***
170319 TTCAAAAAAAGCTTTTCTTATTGCCATTTTTGATAGAATCAAAGTTT
905 TGCAAAAAAAGCTTTTCTTACCACCATTTTTGATAGAATCAAAGTTT
* * *
170366 GTCTCTTAAATAAGGGAAAGTAGAATAGTCATACTAATCCCTGTTCTTTTCAGGATTGGGCACCA
1 GTCTCTTAAATAAGAGAAACTAGAATAGTCATACTAATCCCTGTTCTTTTCAGGATTAGGCACCA
* * *
170431 TAAACGTAGTCTTCTCATAAGGATACAAGATATTGATGTTTTGGTTTTGAAAGAAAGGCTTTTTT
66 TAAACGTAGTCTTCTCATAAGGATACACGATATTGATGCTTTGGTTTTGAAAGAAAGGCTTTCTT
* * * **
170496 CCCCCCAATTTTTGTAAAGTCGGACTTTGTGCTTCAAATGAGACAAATTTTGATTCTAGTAACT-
131 CCCCCCAATTTTTGTAAAGTCTGACTTCGTGCCTCAAATGAGACAAACATTGATTCTAGTAA-TG
* * * * * * *
170560 ATCTTAATTCATTTTGTGATTAGGCACTATAAACACAATCTCCTCATTAGGCTAAATGTTATTGA
195 ACCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAAGGATAATGA
* *
170625 TGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTAACTTAAAATCAAAGTTCATCCCTT
260 TGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCTTATTTACCTTAAAATCAAAGTTCATCCCTT
*
170690 AAATAAGGCAAGCATCGAATCTCGTAACAGTCTCCATTCTTTTCAAGATTGGGAACCAAAAACAC
325 AAATAAGGCAAGCATCGATTCTCGTAACAGTCTCCATTCTTTTCAAGATT-GGAACCAAAAACAC
* * * * *
170755 ATTCCCTTCAATAGGAAACATGACATTGATGCTATGGTGATGCAAAAAAAGATTTCCTTACCACC
389 ATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGATGCAAAAAAAGCTTTTCTTACCACC
* * * *
170820 AGTTTTTGATGGAATCAAAGTTTGTATCCTAAATAAGACAAACATGAAGAGTCATAATAATCCCT
454 A-TTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAAGAGTCATACTAATCCCT
* * *
170885 ATTCTTTTCATA-ATTAGGCCCCATAAACATACTATTCTCATAAGGATACACGATATTGATGCTT
518 ATTCTTTTCA-AGATTAGGCACCATAAACATAGTCTTCTCATAAGGATACACGATATTGATGCTT
* *** * * * *
170949 TGG-TTTCGCAAGAAAGGCTTT-TTTTTCACCAATGTTTGTAAAGTCTCACTTCGAGCCTCAATT
582 TGGTTTTC-AAAGAAAGGCTTTCTTCCCCA-CAATTTTTGTAAAGTCTAACTTCGTGCCTCAAAT
* * *
171012 GAGACAAACATGGATTCTAGTAATGCCCTTCATTCATTTTGTGATTAGGCACTGTAAACACATTC
645 GAGACAAACATTGATTCTAGTAATGACCTTCATTCATTTTGTGATTAGGCACTATAAACACATTC
* * * *
171077 TCCTTC-TTAGGATAAATGATATTGATGATTTTATTTTCCAAGGAAATATTTTCTTCGCCCTATT
710 TCC-TCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGGAAATATTTTCTTTGCCCTATT
* *
171141 TACCTTAAAATCAAAGTTCATCCCTTAAA-AAGGGTAAGCATCGATTCTCGTAATAGTCTCCATT
774 TACCTTAAAATCAAAGTTCATCCCTTAAATAA-GGCAAGCATCGATTCTCGTAACAGTCTCCATT
* * * * * *
171205 CCTATCAAGATTGGGAACC-ATAACACATTCCCTTTATTTGGATACATGACATTGATGCTTTGGC
838 CTTTTCAAGATTGGGAACCAAAAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGT
* ** * * *
171269 AACACAAAAAAAGCTTTTCTTACCACTATTTTTGGTAGAATCGAAGTTT
903 GATGCAAAAAAAGCTTTTCTTACCACCATTTTTGATAGAATCAAAGTTT
* * * * * *
171318 GTCTCCTAAATAAGACAAACCAGAATAGTCATACTAATCCTTGTTCTTCTT-AGTATTATGCACC
1 GTCTCTTAAATAAGAGAAACTAGAATAGTCATACTAATCCCTGTTCTT-TTCAGGATTAGGCACC
* *
171382 ATAAACGTAGTCTTCTCACAAGGATACACGATATTGATGCTTTTGTTTTGAAAGAAAGGCTTTCT
65 ATAAACGTAGTCTTCTCATAAGGATACACGATATTGATGCTTTGGTTTTGAAAGAAAGGCTTTCT
* * * * *
171447 T-CCCCCAATTTTTGTAAAGTCCGACTTCATGCCTTAAATGAGACAAACATTGATTTTAGTAATA
130 TCCCCCCAATTTTTGTAAAGTCTGACTTCGTGCCTCAAATGAGACAAACATTGATTCTAGTAATG
* * * * * * * *
171511 ATCTTCACTCATTTTGTAATTTGGCACTATAAACAGATTCTCCTCATTAGGATAAATGTTATTGA
195 ACCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAAGGATAATGA
* * *
171576 TGATTTTCCTTTGCAAGGAAATATTTTCTTTGCCTTATTTACCTTAAAATCAAAGTTCATCTCC-
260 TGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCTTATTTACCTTAAAATCAAAGTTCATC-CCT
* * * *
171640 TAAACAAGGCAAGCATCGATTCTAGTAACAATCTCCATTCTTCTCAAGATTGGAATCCAAAAACA
324 TAAATAAGGCAAGCATCGATTCTCGTAACAGTCTCCATTCTTTTCAAGATTGGAA-CCAAAAACA
* * * * *
171705 CATTCCCTTCATTAGGATACATGACATTGACGCTTTGGGGACGCAAAAAGAGCTTTTCCTACCAC
388 CATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGATGCAAAAAAAGCTTTTCTTACCAC
171770 AGCA--TTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAAGAGTCATACTAATCC
453 --CATTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAAGAGTCATACTAATCC
** *
171833 CTATTCTTTTCAAGATTAGGTGCCATAAACATAGTCTTCTCATAAAGATACACGATATTGATGCT
516 CTATTCTTTTCAAGATTAGGCACCATAAACATAGTCTTCTCATAAGGATACACGATATTGATGCT
* * * * * *
171898 TTGGTTTCGCAAA-AAAAGCTTT-TTTCCCACAAATTTTTGTAAAGTCTGACTTCGAGCCTCAAT
581 TTGGTTT-TCAAAGAAAGGCTTTCTTCCCCAC-AATTTTTGTAAAGTCTAACTTCGTGCCTCAAA
* * *
171961 TGAGACAAACATGGATTCTAGTAATGCCCTTTCATTCATTTTGTGATTAGGCACTATAAACTCAT
644 TGAGACAAACATTGATTCTAGTAATGACC-TTCATTCATTTTGTGATTAGGCACTATAAACACAT
* * * * * * * *
172026 TCTTCACATTAGGATAGAGGATAATGATGATTTTCTTTTGCATGAAAATCTTTTCTTTGCCTTAT
708 TCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGGAAATATTTTCTTTGCCCTAT
* * * *
172091 TTACCTTAAAATCAAAGTTCATCCCTTAAATAAAGCAAGCATCAATTCTCGTAACAATCTCTATT
773 TTACCTTAAAATCAAAGTTCATCCCTTAAATAAGGCAAGCATCGATTCTCGTAACAGTCTCCATT
* * * * * * * *
172156 CTTCTCAA-ATTTGGAACCAAAAACATATTCCCATCGTTACGTTACAAGACATTGATGCTTTGGT
838 CTTTTCAAGATTGGGAACCAAAAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGT
**
172220 GATGCAAAAAAAGCTTTTCTTACCACTGTTTTTGATAGAATCAAAGTTT
903 GATGCAAAAAAAGCTTTTCTTACCACCATTTTTGATAGAATCAAAGTTT
* * * ** *
172269 GTCTCTTAAATGAGACAAA-TATGAAGAGTCATACTAATCCCAATTCTTTTCAGAATTAGGCACC
1 GTCTCTTAAATAAGAGAAACTA-GAATAGTCATACTAATCCCTGTTCTTTTCAGGATTAGGCACC
* * * * * * * *
172333 ATAAACATAGTATTCTCATAGGGATACATGATATTGATGCTTTGGTTTCGCAAGAAAAGCTTTTT
65 ATAAACGTAGTCTTCTCATAAGGATACACGATATTGATGCTTTGGTTTTGAAAGAAAGGCTTTCT
** * * * *
172398 TCCCAACAATTTTTGTAAAGTTTTACTTCGTGCCTCAATTGAGACAAACATTGATTCTTGTAATG
130 TCCCCCCAATTTTTGTAAAGTCTGACTTCGTGCCTCAAATGAGACAAACATTGATTCTAGTAATG
* * * *
172463 CCCTT-ATTTCATTTTGTAATTAGGCACTATAAACACATTCTTCACATTAGGATAAAGGATAATG
195 ACCTTCA-TTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAAGGATAATG
* * * *
172527 ATGATTTTCTTTTGCATTGGAAAACTTTTCTTTGCCCTATTTACCTTAGAATCAAAGTTCATCTC
259 ATGATTTTCTTTTGCA-TGGAAATCTTTTCTTTGCCTTATTTACCTTAAAATCAAAGTTCATCCC
* * * * * *
172592 TTAAAAAAGGTAAGCATCGACTCTCGTAATAGTCTCCATTCATTTCAAGATTGGGAACC-AAAGC
323 TTAAATAAGGCAAGCATCGATTCTCGTAACAGTCTCCATTCTTTTCAAGATT-GGAACCAAAAAC
* * *
172656 ACATTCCCTTCCTTAGGATACAAGACATTGATGCTATGGTGATGCAAAAAAAGCTTTTCTTACCA
387 ACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGATGCAAAAAAAGCTTTTCTTACCA
* * *
172721 CCGTTTTTTATGGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAAGAGTCATACTAATCCC
452 CCATTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAAGAGTCATACTAATCCC
* * * **
172786 TATTCTTTTCACGGTTAGGCACCATAAACATAGTCTTCTCATAAAAGGATACACGATATTAACAC
517 TATTCTTTTCAAGATTAGGCACCATAAACATAGTCTTCTCAT--AAGGATACACGATATTGATGC
* * * * *
172851 TTTGGTTTTGAAAGAAAAGCTTTCTTCCCC-CTAATTTTTGTAAAGTCTTATTTCGTGCCTTAAA
580 TTTGGTTTTCAAAGAAAGGCTTTCTTCCCCAC-AATTTTTGTAAAGTCTAACTTCGTGCCTCAAA
* * * *
172915 TGAGACAAACATTGATTCTAGTAATGATCTTCATTCCTTTTGTGATTAGGCGCTACAAACACATT
644 TGAGACAAACATTGATTCTAGTAATGACCTTCATTCATTTTGTGATTAGGCACTATAAACACATT
* * *
172980 CTCCTCATTAGGATAAATGTTATTGATGATTTTCTTTTGCATTGGAAATCTTCTCTTTGCCCTAT
709 CTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCA-TGGAAATATTTTCTTTGCCCTAT
* ** *
173045 TTACCTTAAAATCAAAGTTCATCCCTTAAATAAGGCTAGCATCGATTCTCAAAATAGTCTCCATT
773 TTACCTTAAAATCAAAGTTCATCCCTTAAATAAGGCAAGCATCGATTCTCGTAACAGTCTCCATT
* * * * * *
173110 CCTTTCAAGATTAGGAACCAAAAACACATTCCCTTCATTAGGATATACGACATTTATACTTTGGT
838 CTTTTCAAGATTGGGAACCAAAAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGT
* * *
173175 GACGCAAAAAAAGCAGTTTCTTACCACCGTTTTTGATAGAATCAAAGTTT
903 GATGCAAAAAAAGC-TTTTCTTACCACCATTTTTGATAGAATCAAAGTTT
* * *
173225 ATGTCTTAAATAAGAGAAACTAGAATAGTCATACTAATCCCTGTTCTTTTCAAGATTAGGCACCA
1 GTCTCTTAAATAAGAGAAACTAGAATAGTCATACTAATCCCTGTTCTTTTCAGGATTAGGCACCA
* * * *
173290 TAAAGGTAGTCTTTTCATAAGGATACACGATATTAATGCTTTGGTTTTGAAAGAAAGGCTTTCCT
66 TAAACGTAGTCTTCTCATAAGGATACACGATATTGATGCTTTGGTTTTGAAAGAAAGGCTTTCTT
** * * * * *
173355 CCCCTTAATTTTTGTAAAGTTTG-CTTCATGCCTTAAATGAGACAAACATTGATTCAAGTAAAGA
131 CCCCCCAATTTTTGTAAAGTCTGACTTCGTGCCTCAAATGAGACAAACATTGATTCTAGTAATGA
* * *
173419 ACTTCATTCATTTTGGGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGTTATTAAT
196 CCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAA-G-GA-TAAT
** * *
173484 GATTTTTTTTTTTTTGCATGGAAATCTTTTCTTTGCCCTATTTACCTTAAAATCAAAGTTCATCC
258 GA-TGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCTTATTTACCTTAAAATCAAAGTTCATCC
* ** *
173549 CTCAAATAAGGTGAGCATCGA-TCTCGTAACAGTCTCCATTCTTTTCAAGATTGGGAATCAAAAA
322 CTTAAATAAGGCAAGCATCGATTCTCGTAACAGTCTCCATTCTTTTCAAGATT-GGAACCAAAAA
* * * * * * *
173613 CACAATCCCTTAATTAGGATACGTGACGTTGATGCTTTGGTGACGCAAAAAAAAACGTTTCTTAC
386 CACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGATGC-AAAAAAAGCTTTTCTTAC
* * * *
173678 CGCCATTTTTGATAGAATCAAAGTTTGTCTCTTAAATAA-AGGAAAC-TAGAATAGTCATAGTAA
450 CACCATTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGA-CAAACAT-GAAGAGTCATACTAA
*
173741 TCCCTATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATAAGGATACACGATATTGAT
513 TCCCTATTCTTTTCAAGATTAGGCACCATAAACATAGTCTTCTCATAAGGATACACGATATTGAT
* * * * ** *
173806 GCTTTGGTTTTGAAAGAAAGGCTTTTTTCCTCC-TAATTTTTGTAAAGTCTGACTTTATGCCTTA
578 GCTTTGGTTTTCAAAGAAAGGCTTTCTTCC-CCACAATTTTTGTAAAGTCTAACTTCGTGCCTCA
* * * *
173870 AATGAGATAAACTATTGATTCTAGTAATTATCTTCATTCATTTTGTGATTA-GCTACTACAAACA
642 AATGAGACAAAC-ATTGATTCTAGTAATGACCTTCATTCATTTTGTGATTAGGC-ACTATAAACA
* *
173934 CAATCTCCTCATTAGGATAAAT-ATTATTGATAATTTTCTTTTGCATGGAAATATTTTCTTTGCC
705 CATTCTCCTCATTAGGATAAATGA-TATTGATGATTTTCTTTTGCATGGAAATATTTTCTTTGCC
* * *
173998 CTATTTACCTTAAAACCAAAGTTCATCCCTTAAATAAGGGAAGCATCGATTCTCGTAACAATCTC
769 CTATTTACCTTAAAATCAAAGTTCATCCCTTAAATAAGGCAAGCATCGATTCTCGTAACAGTCTC
* * * * *
174063 TATTCTTCTCAAGATTAGGG-ACCAAAAACACATT-CCTTCATTACGTTACAAGACATTGATGCT
834 CATTCTTTTCAAGATT-GGGAACCAAAAACACATTCCCTTCATTAGGATACATGACATTGATGCT
* *** *
174126 TTGGTGATGCGAAAAAAGCTTTTCTTACCATTGTTTTTTATAGAATCAAAGTTT
898 TTGGTGATGCAAAAAAAGCTTTTCTTACCACCATTTTTGATAGAATCAAAGTTT
* * * * * *
174180 GTCTCTTAAATAAGACAAAC-ATGAAGAGTCATAATAATCCCTCTTCTTTTCATGATTAGGCAGC
1 GTCTCTTAAATAAGAGAAACTA-GAATAGTCATACTAATCCCTGTTCTTTTCAGGATTAGGCACC
* * * * * * *
174244 ATAAACATAGTCCTCTCTTAAGGATACACAACATTGATGCTTTGGTTTTGCAAA-AAAAGCTTTT
65 ATAAACGTAGTCTTCTCATAAGGATACACGATATTGATGCTTTGGTTTTG-AAAGAAAGGCTTTC
** * * * *
174308 TTCCCAGCAATTTTTGTAAAGTTTGACTTCGTGCCTCAATTGAGACAAACATGGATTCTTGTAAT
129 TTCCCCCCAATTTTTGTAAAGTCTGACTTCGTGCCTCAAATGAGACAAACATTGATTCTAGTAAT
* * * * *
174373 GCCCTTCTTTCATTTTGTGATTAGGTACTATAAACACATTCTTCACATTAGGATAAAGGATAATG
194 GACCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAAGGATAATG
* * * * *
174438 ATGACTTTCTTTTGCTTGAAAATCTTTTGTTTGCCTTATTTACCTTAAAATTAAAGTTCATCCCT
259 ATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCTTATTTACCTTAAAATCAAAGTTCATCCCT
* * * * * *
174503 TAAATAAGGCAAGCGTTGAATCTCGTAATAGTCTCCATTCTTCTCAATATTAGGAACCAAAAACA
324 TAAATAAGGCAAGCATCGATTCTCGTAACAGTCTCCATTCTTTTCAAGATT-GGAACCAAAAACA
** * * * *
174568 CATTCTTTTTATTAGGATACATGACATTGATGCTATGGTGATGGAAAAAAAGCTTTTCTTACCAT
388 CATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGATGCAAAAAAAGCTTTTCTTACCAC
* * * * *
174633 CGTTTTTGATACAATCAAAGTTTGCCTCTTTAATAAGACAAACATGAAGAGTCATACT-ATTCCT
453 CATTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAAGAGTCATACTAATCCCT
* *
174697 ATTCTTTTCAAGATTAGGCCCCATAAACATAGCCTTCTCATAAGGATACACGATATTGATGCTTT
518 ATTCTTTTCAAGATTAGGCACCATAAACATAGTCTTCTCATAAGGATACACGATATTGATGCTTT
* * * * * *
174762 AG-TTTCGCAAGAAAAGCTTAT-TT-CCCACCAATTTTTGTAAAGTCTGACTTCGAGCCTCAATT
583 GGTTTTC-AAAGAAAGGCTT-TCTTCCCCA-CAATTTTTGTAAAGTCTAACTTCGTGCCTCAAAT
* * * * * *
174824 GAGACAAACATGGATTCTAGTAATGCCCTTAATTCATTTTGTGCTTAGGCAATATAAACTCATTC
645 GAGACAAACATTGATTCTAGTAATGACCTTCATTCATTTTGTGATTAGGCACTATAAACACATTC
* * * * * * * * *
174889 TTCACATTACGATAAAGGATAATGATGATTTTTTTTTGCATGGAAATCTTTTCTTTGTCTTATTT
710 TCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGGAAATATTTTCTTTGCCCTATTT
174954 ACCTTAAAATCAAAGTTCATCCCTTAAATAAGGCAAGCATCGATTCTC-TAAACAGTCTCCATTC
775 ACCTTAAAATCAAAGTTCATCCCTTAAATAAGGCAAGCATCGATTCTCGT-AACAGTCTCCATTC
* * * * * *
175018 TTTTCAAGATTAGAAACTAAAAACACGTTCCCTTCATTAGGATACAAGGCATTGATGCTTTGGTG
839 TTTTCAAGATTGGGAACCAAAAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTG
** * * *
175083 ACACAAAAAAAGCTTTTCTTACCACC-GTTTTCATAAAATCAAAGTTT
904 ATGCAAAAAAAGCTTTTCTTACCACCATTTTTGATAGAATCAAAGTTT
* * * *
175130 GTCTCTTAAATAAGACAAAC-ATGAAGAGTCATACTAATCCCTATTCTTTTCAAGATTAGGCACC
1 GTCTCTTAAATAAGAGAAACTA-GAATAGTCATACTAATCCCTGTTCTTTTCAGGATTAGGCACC
* ** * * * *
175194 ATAAACATAGTCTTCTCATAAGGATACTTGATATTGATGCTTTGGTTTCGCAAGAAAAGCTTTTT
65 ATAAACGTAGTCTTCTCATAAGGATACACGATATTGATGCTTTGGTTTTGAAAGAAAGGCTTTCT
* * * * * *
175259 TCCCACCAATTTTTGTAAAGTTTGACTTCGTGTCTCAATTGAGACAAACATGGGTTCTAGTAATG
130 TCCCCCCAATTTTTGTAAAGTCTGACTTCGTGCCTCAAATGAGACAAACATTGATTCTAGTAATG
* * * *
175324 CCCTT-ATTTCATTTTGTGATTAGGCACTATAAACACAATCTTCACATTAGGATAAAGGATAATG
195 ACCTTCA-TTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAAGGATAATG
* * *
175388 ATGATTTTCTTTTGCATGAAAATATTTTGTTTGCCTTATTTACCTTAAAATCAAAGCTT-ATCCC
259 ATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCTTATTTACCTTAAAATCAAAG-TTCATCCC
* *
175452 TTAAATAAGGCAAGCATTGATTCTCGTAACAGTCTCCATTCTTTTCAATATTGGGAACCAAAAAC
323 TTAAATAAGGCAAGCATCGATTCTCGTAACAGTCTCCATTCTTTTCAAGATT-GGAACCAAAAAC
* * ** * * *
175517 ACATTCCCTTCATTAGGATACAGGACATTAACACTATGGTCATGCAAAAAAGGCTTTTCTTACCA
387 ACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGATGCAAAAAAAGCTTTTCTTACCA
* * *
175582 CCATTTTTGATAAAATCGAAGTTTGTCTCTTAAATAAGACAAACATGAAGAGTCATCCTAATCCC
452 CCATTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAAGAGTCATACTAATCCC
* * * * *
175647 TATTCTTTTCACGATTAGGCACCATAAACATAGTCTTCTCTTAAGGATGCACGATATTAATGCCT
517 TATTCTTTTCAAGATTAGGCACCATAAACATAGTCTTCTCATAAGGATACACGATATTGATGCTT
* * *
175712 TGGTTTTGAAAGAAAGGCTTTCTTCCCCCCAATTTTTGTAAAGTCTTACTTCGTGCCTCAAATGA
582 TGGTTTTCAAAGAAAGGCTTTCTTCCCCACAATTTTTGTAAAGTCTAACTTCGTGCCTCAAATGA
* * *
175777 GACAAACATTGATTCTAGTAATGATCTTCAATCATTTTGTGATTAGGCACTACAAACACATTCT-
647 GACAAACATTGATTCTAGTAATGACCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTC
*
175841 CTCGATTAGGATAAATGTTATTGATGATTTTCTTTTGCATTGGAAA-ACTTTTCTTTGCCCTATT
712 CTC-ATTAGGATAAATGATATTGATGATTTTCTTTTGCA-TGGAAATA-TTTTCTTTGCCCTATT
* * * * * *
175905 TACCTTAGAATCAAAGTTCATCTCTGAAAAAAGGCAAGCATTGATTCTCGTAACAGTCACCATTC
774 TACCTTAAAATCAAAGTTCATCCCTTAAATAAGGCAAGCATCGATTCTCGTAACAGTCTCCATTC
* * * *
175970 ATTTCAAGATTGGGAACCAAAAACACATTCCCTTCCTTAGGATACAAGACATTGATGCTATGGTG
839 TTTTCAAGATTGGGAACCAAAAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTG
*
176035 ATGCAAAAAAAGTTTTTCTTACCACCATTTTTGATAGAATCAAAGTTT
904 ATGCAAAAAAAGCTTTTCTTACCACCATTTTTGATAGAATCAAAGTTT
* * * * * * *
176083 ATCTCTTAAATAAGACAAAAT-GAAGAGTCATACTAGTGCCTATTCTTTTCACGG-TTAGGCACC
1 GTCTCTTAAATAAGAGAAACTAGAATAGTCATACTAATCCCTGTTCTTTTCA-GGATTAGGCACC
* * * ***
176146 ATAAACATAGTCTTCTCATAAAAGAATACACGATATTAACAATTTGGTTTTGAAAGAACA-GCTT
65 ATAAACGTAGTCTTCTCAT--AAGGATACACGATATTGATGCTTTGGTTTTGAAAGAA-AGGCTT
* * *
176210 TCTTCCCCCCAATTTTTGTAAAGTCTTATTTCATGCCTCAAATGAGACAAACATTGATTCTAGTA
127 TCTTCCCCCCAATTTTTGTAAAGTCTGACTTCGTGCCTCAAATGAGACAAACATTGATTCTAGTA
* * * * * *
176275 ATGATCTTCATTCCTTTTGTGATTAGGCACTACAAACACATTCTCCTCATTAGGATAAATGTTAT
192 ATGACCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAAGGATAA
* *
176340 TGATGATTTTCTTTTGCACTGGAAATCTTCTCTTTGCCCTATTTACCTTAAAATCAAAGTTCATC
257 TGATGATTTTCTTTTGCA-TGGAAATCTTTTCTTTGCCTTATTTACCTTAAAATCAAAGTTCATC
* * *
176405 CCTTAAATAAGGCTAGCATC-ATTCTCATAATAGTCTCCATTCTTTTCAAGATTAGGAACCAAAA
321 CCTTAAATAAGGCAAGCATCGATTCTCGTAACAGTCTCCATTCTTTTCAAGATT-GGAACCAAAA
* * * * * * * *
176469 ACACATTTCCTTTATTCGGATATACGACATTTATACTTTGGTGATGC-AAAAAAGCTTTGCTTAC
385 ACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGATGCAAAAAAAGCTTTTCTTAC
* * * * * *
176533 TACCGTTTTTGATAGAATCAAAGTTTATGTCTTAAATAAGAGAAAC-TAGAATAGTCATACTAAT
450 CACCATTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACAT-GAAGAGTCATACTAAT
* ** * *
176597 CCCTGTTCTTTTCAAGATTAGGCACCATAAAGGTTGTCTTCTCATAA-GATACACGATATTAATG
514 CCCTATTCTTTTCAAGATTAGGCACCATAAACATAGTCTTCTCATAAGGATACACGATATTGATG
* * ** * *
176661 TTTTGGTTTTGAAAGAAAGGCTTTCTTCGCCCA-AATTTTTGTAAAGT-TTGCTTCATGCCTTAA
579 CTTTGGTTTTCAAAGAAAGGCTTTCTTC-CCCACAATTTTTGTAAAGTCTAACTTCGTGCCTCAA
* * * * * *
176724 ATGAGACAAACATTTATTCAAGTAAAGAACTTCATTCATTTTGGGATTATGCACTATAAACACAT
643 ATGAGACAAACATTGATTCTAGTAATGACCTTCATTCATTTTGTGATTAGGCACTATAAACACAT
* * * *
176789 TCTCCTTATTAGGATAAATGTTATTGATGATTTTTTTTTGCATGGAAATTTTTTCTTTGCCCTAT
708 TCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGGAAATATTTTCTTTGCCCTAT
* *
176854 TTACCTTAAAATCAAAGTTCATCCCTCAAATAAGGCGAGCATCGA-TCTCGTAACAGTCTCCATT
773 TTACCTTAAAATCAAAGTTCATCCCTTAAATAAGGCAAGCATCGATTCTCGTAACAGTCTCCATT
* * * * *
176918 CTTTTCAAAATTGGGAATCAAAAACACAATCCCTTAATTAGGATACATGACATTGATTCTTTGGT
838 CTTTTCAAGATTGGGAACCAAAAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGT
* * * * *
176983 GACGCAAAAAAAACGTTTCTTACCGCCATTTTTGATAGAATTAAAGTTT
903 GATGCAAAAAAAGCTTTTCTTACCACCATTTTTGATAGAATCAAAGTTT
* * *
177032 GTCTCTTAAGTAAGGGAAACTAGAATAGTCATAGTAATCCCTGTTCTTTTCAGGATTAGGCACCA
1 GTCTCTTAAATAAGAGAAACTAGAATAGTCATACTAATCCCTGTTCTTTTCAGGATTAGGCACCA
* *
177097 TAAACATAGTCTTCTCATAAGGATACACGATATTGATGCTTTGGTTTTGAAAGAAAGGCTTTTTT
66 TAAACGTAGTCTTCTCATAAGGATACACGATATTGATGCTTTGGTTTTGAAAGAAAGGCTTTCTT
* * * * * *
177162 CCCCCTAATTTTTGTAAAGTCTAACTTTGTGCCTTAAATAAGACAAACATTGATTCTAGTAATTA
131 CCCCCCAATTTTTGTAAAGTCTGACTTCGTGCCTCAAATGAGACAAACATTGATTCTAGTAATGA
* * * * *
177227 TCTTCATTCATTTTGTGATTAGGTACTATAAACACAATCTCCTCATTAGGATAAA-TATTATTGA
196 CCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAAGGA-TAATGA
* * * *
177291 TAATTTTCTTTTGCATGGAAATATTTTCTTTGCCCTATTTACCTTAAAACCAAAGTTCATCCCTT
260 TGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCTTATTTACCTTAAAATCAAAGTTCATCCCTT
* * * *
177356 AAATAAGGTAAGCATCGATTCTCGTAACAATCTCTATTCTTCTCAAGATTAGGAACCAAAAACAC
325 AAATAAGGCAAGCATCGATTCTCGTAACAGTCTCCATTCTTTTCAAGATT-GGAACCAAAAACAC
* * * * * *
177421 ATTCCCTTCATTACGTTACAAGACATTGATGCTTTGGTGATGCAAAAAAAGCTTTTCTTTCCGCT
389 ATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGATGCAAAAAAAGCTTTTCTTACCACC
* * * * *
177486 GTTTTTTATAGAATCAAAGTTTGTCTCTTAAATAAGACAAAGATGAAGCGTCATAATAATCCCTA
454 ATTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAAGAGTCATACTAATCCCTA
* * * *
177551 TTCTTTTCATGATTAGGCAGCATAAACATAGTCTTCTCTTAAGGATACACGACATTGATGCTTTG
519 TTCTTTTCAAGATTAGGCACCATAAACATAGTCTTCTCATAAGGATACACGATATTGATGCTTTG
* ** * * *
177616 G-TTTCGCAAGAAAAACTATTTTTCCAC-CAATTTTTGTAAAGTCTAGCTTCGTGCCTCAAATGA
584 GTTTTC-AAAGAAAGGCT-TTCTTCCCCACAATTTTTGTAAAGTCTAACTTCGTGCCTCAAATGA
* ** * *
177679 GACAAA-ATGGATTCTAGTAACAATCTTCATTCA-TTTGTGATTAGGCACTGTAAACACATTCTC
647 GACAAACATTGATTCTAGTAATGACCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTC
* * *
177742 CTCCTTAGGATAAATGATATTGATGATTTTATTTTGCATGAAAATATTTTCTTTGCCCTATTTAC
712 CTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGGAAATATTTTCTTTGCCCTATTTAC
* * * *
177807 CTTAAAATCAAAGTTCATCGCTTAAAT-AGAGCAAGCATCGATTCTCATAATAGTCACCATTCTT
777 CTTAAAATCAAAGTTCATCCCTTAAATAAG-GCAAGCATCGATTCTCGTAACAGTCTCCATTCTT
* * * *
177871 TTCAAGATTCGGAACCAAAAACACATTCCCTTCATGAGGATACATGGCATTGATGCTTTGGGGAT
841 TTCAAGATTGGGAACCAAAAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGAT
* * *
177936 GCAAAAAAAGCTTTGCTTACCACTATTTTTGATAGAATCAATGTTT
906 GCAAAAAAAGCTTTTCTTACCACCATTTTTGATAGAATCAAAGTTT
* ** *
177982 GTCTCCTAAATAAGATG-AACCGGATTAGTCATACTAATCCCTGTTCTTTTCAGGATTAGGCACC
1 GTCTCTTAAATAAGA-GAAACTAGAATAGTCATACTAATCCCTGTTCTTTTCAGGATTAGGCACC
* * *
178046 ATAAACGCAATCTTCTCATAAGGATACACAATATTGATGCCTTT-GTTTT----GAAA----TTC
65 ATAAACGTAGTCTTCTCATAAGGATACACGATATTGATG-CTTTGGTTTTGAAAGAAAGGCTTTC
* * * *
178102 TT-CCCCTAATTTTTGTAAAGACTCACTTCGTGCCTCAAATGAGACAAACATTGATTCGAGTAAT
129 TTCCCCCCAATTTTTGTAAAGTCTGACTTCGTGCCTCAAATGAGACAAACATTGATTCTAGTAAT
* * * * * *
178166 AATCTTCATTCATTTTGTAATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGTTATTG
194 GACCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAAGGATAATG
* *
178231 ATGATTTTCTTTTGCATGGAAATATTTTATTTGCCTTATTTACCTTAAAATCAAAGTTCATCCCT
259 ATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCTTATTTACCTTAAAATCAAAGTTCATCCCT
* * *
178296 TAAATAAGGCAAGCATCGATTCTCGTAACAGTTTCTATTCTTTTCAAAATTGGGAACCAAAAACA
324 TAAATAAGGCAAGCATCGATTCTCGTAACAGTCTCCATTCTTTTCAAGATT-GGAACCAAAAACA
* * * * * * *
178361 CATTACTTTCATTTGGATACATGACGTTGATACTTTGGAGATGCAAAAAGAGCTTTTCTTACCA-
388 CATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGATGCAAAAAAAGCTTTTCTTACCAC
* * *
178425 TAGCTTTTGATAGAATCATAGTTTGTCTCTTAAATAAGACAAACATGAAGAGTCATACTAATCCC
453 CA-TTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAAGAGTCATACTAATCCC
* * * *
178490 TATTCTTTTCAAGATTAGGCATCGTAAACATAGTCTTATCATAAGGATACATGATATTGATGC--
517 TATTCTTTTCAAGATTAGGCACCATAAACATAGTCTTCTCATAAGGATACACGATATTGATGCTT
* * *** * * *
178553 TGG-TTTCGTAAGAAAGG-TTTTTTTTTCACCAATTTTTGTAAAGTCCAACTTCATGCCTTAAAT
582 TGGTTTTC-AAAGAAAGGCTTTCTTCCCCA-CAATTTTTGTAAAGTCTAACTTCGTGCCTCAAAT
* * ** * * *
178616 GAGACAAAAATGGATTCTAGTAACAATCTTCATTCA-TTTGTGATTAGGCACTGTAAACACATTT
645 GAGACAAACATTGATTCTAGTAATGACCTTCATTCATTTTGTGATTAGGCACTATAAACACATTC
* * *
178680 TCCTCCTTAGGATAAATGATATTGATGCTTTGCTTT
710 TCCTCATTAGGATAAATGATATTGATGATTTTCTTT
178716 CACAAGAAAA
Statistics
Matches: 8090, Mismatches: 1087, Indels: 259
0.86 0.12 0.03
Matches are distributed among these distances:
937 6 0.00
938 1 0.00
939 52 0.01
940 88 0.01
941 398 0.05
942 4 0.00
946 4 0.00
947 62 0.01
948 246 0.03
949 373 0.05
950 1261 0.16
951 2266 0.28
952 1198 0.15
953 521 0.06
954 416 0.05
955 361 0.04
956 285 0.04
957 223 0.03
958 201 0.02
959 124 0.02
ACGTcount: A:0.32, C:0.19, G:0.14, T:0.35
Consensus pattern (951 bp):
GTCTCTTAAATAAGAGAAACTAGAATAGTCATACTAATCCCTGTTCTTTTCAGGATTAGGCACCA
TAAACGTAGTCTTCTCATAAGGATACACGATATTGATGCTTTGGTTTTGAAAGAAAGGCTTTCTT
CCCCCCAATTTTTGTAAAGTCTGACTTCGTGCCTCAAATGAGACAAACATTGATTCTAGTAATGA
CCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAAGGATAATGAT
GATTTTCTTTTGCATGGAAATCTTTTCTTTGCCTTATTTACCTTAAAATCAAAGTTCATCCCTTA
AATAAGGCAAGCATCGATTCTCGTAACAGTCTCCATTCTTTTCAAGATTGGAACCAAAAACACAT
TCCCTTCATTAGGATACATGACATTGATGCTTTGGTGATGCAAAAAAAGCTTTTCTTACCACCAT
TTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAAGAGTCATACTAATCCCTATT
CTTTTCAAGATTAGGCACCATAAACATAGTCTTCTCATAAGGATACACGATATTGATGCTTTGGT
TTTCAAAGAAAGGCTTTCTTCCCCACAATTTTTGTAAAGTCTAACTTCGTGCCTCAAATGAGACA
AACATTGATTCTAGTAATGACCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCA
TTAGGATAAATGATATTGATGATTTTCTTTTGCATGGAAATATTTTCTTTGCCCTATTTACCTTA
AAATCAAAGTTCATCCCTTAAATAAGGCAAGCATCGATTCTCGTAACAGTCTCCATTCTTTTCAA
GATTGGGAACCAAAAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGATGCAAA
AAAAGCTTTTCTTACCACCATTTTTGATAGAATCAAAGTTT
Found at i:175252 original size:158 final size:157
Alignment explanation
Indices: 171713--175732 Score: 687
Period size: 158 Copynumber: 25.3 Consensus size: 157
171703 CACATTCCCT
* * * *** * *
171713 TCATTAGGATACATGACATTGACGCTTTGGGGACGCAA-AAAGAGCTTTTCCTACCACAGC-ATT
1 TCATTAGGATACAGGATATTGATGCTTTGGTTTCGCAAGAAA-AGCTTTTCTTACCAC--CTTTT
* *
171776 TGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAAGAGTCATACTAATCCCTATTCTT
63 TCATAAAATCAAAGTTTGTCTCTTAAATAAGACAAACATG-AGAGTCATACTAATCCCTATTCTT
**
171841 TTCAAGATTAGGTGCCATAAACATAGTCTTC
127 TTCAAGATTAGGCACCATAAACATAGTCTTC
* * * * * *
171872 TCATAAAGATACACGATATTGATGCTTTGGTTTCGCAAAAAAAGCTTTT-TTCCCACAAATTTTT
1 TCATTAGGATACAGGATATTGATGCTTTGGTTTCGCAAGAAAAGCTTTTCTTACCAC--CTTTTT
* * ** * * * * * * * *
171936 -GTAAAGTCTGACTTCGAGC-CTCAATTGAGACAAACATG-GATTC-TAGTAATGCCCTTTCATT
64 CATAAAATCAAAGTTTG-TCTCTTAAATAAGACAAACATGAGAGTCATACTAAT-CCC--T-ATT
** * *
171997 CATTTT-GTGATTAGGCACTATAAAC-TCATTCTTC
124 C-TTTTCAAGATTAGGCACCATAAACAT-AGTCTTC
* * * * ** * * * **
172031 ACATTAGGATAGAGGATAATGATGATTTTCTTTTGCATGAAAATCTTTTCTT--TGCCTTATTTA
1 TCATTAGGATACAGGATATTGATGCTTTGGTTTCGCAAGAAAAGCTTTTCTTACCACCTT-TTT-
* ** * * * * * *
172094 CCTTAAAATCAAAGTTCATCCCTTAAATAA-AGCAAGCATCA-ATTCTCGTAAC-AATCTCTATT
64 -CATAAAATCAAAGTTTGTCTCTTAAATAAGA-CAAACATGAGA--GTCAT-ACTAATCCCTATT
* * * * * *
172156 CTTCTCAA-ATTTGGAACCAAAAACATATTC-CC
124 CTTTTCAAGATTAGGCACCATAAACATAGTCTTC
* * * * * * * *
172188 ATCGTTACGTTACAAGACATTGATGCTTTGGTGAT-GCAAAAAAAGCTTTTCTTACCACTGTTTT
1 -TCATTAGGATACAGGATATTGATGCTTTGGT-TTCGCAAGAAAAGCTTTTCTTACCAC-CTTTT
* * * * *
172252 TGATAGAATCAAAGTTTGTCTCTTAAATGAGACAAATATGAAGAGTCATACTAATCCCAATTCTT
63 TCATAAAATCAAAGTTTGTCTCTTAAATAAGACAAACATG-AGAGTCATACTAATCCCTATTCTT
*
172317 TTC-AGAATTAGGCACCATAAACATAGTATTC
127 TTCAAG-ATTAGGCACCATAAACATAGTCTTC
* * *
172348 TCA-TAGGGATACATGATATTGATGCTTTGGTTTCGCAAGAAAAGCTTTT-TTCCCAACAATTTT
1 TCATTA-GGATACAGGATATTGATGCTTTGGTTTCGCAAGAAAAGCTTTTCTTACC-AC-CTTTT
* * *** * * * * * * * **
172411 T-GTAAAGTTTTACTTCGTGC-CTCAATTGAGACAAACAT-TGATTC-TTGTAATGCCCTTATTT
63 TCATAAAATCAAAGTTTGT-CTCTTAAATAAGACAAACATGAGAGTCATACTAAT-CCC-TA-TT
** * * *
172472 CATTTTGTA-ATTAGGCACTATAAACACATTCTTC
124 C-TTTTCAAGATTAGGCACCATAAACATAGTCTTC
* * * * ** * * **
172506 ACATTAGGATAAAGGATAATGATGATTTTCTTTTGCATTGGAAAA-CTTTTCTTTGC-CCTATTT
1 TCATTAGGATACAGGATATTGATGCTTTGGTTTCGCA--AGAAAAGCTTTTCTTACCACCT-TTT
* * * ** * ** * *** * * *
172569 ACCTTAGAATCAAAGTTCATCTCTTAAAAAAGGTAAGCATCGACTCTCGTAATAGTCTCC-ATTC
63 -TCATAAAATCAAAGTTTGTCTCTTAAATAAGACAAACAT-GAGAGTCATACTAATC-CCTATTC
* * * ***
172633 ATTTCAAGATTGGGAACCA-AAGCACATTCCCTTC
125 TTTTCAAGATTAGGCACCATAA--ACATAGTCTTC
* * * * *
172667 -C-TTAGGATACAAGACATTGATGCTATGGTGAT-GCAAAAAAAGCTTTTCTTACCACCGTTTTT
1 TCATTAGGATACAGGATATTGATGCTTTGGT-TTCGCAAGAAAAGCTTTTCTTACCACC-TTTTT
* **
172729 TATGGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAAGAGTCATACTAATCCCTATTCTTT
64 CATAAAATCAAAGTTTGTCTCTTAAATAAGACAAACATG-AGAGTCATACTAATCCCTATTCTTT
* *
172794 TCACGGTTAGGCACCATAAACATAGTCTTC
128 TCAAGATTAGGCACCATAAACATAGTCTTC
* * * ** * * *
172824 TCATAAAAGGATACACGATATTAACACTTTGGTTTTGAAAGAAAAGC-TTTCTT-CCCCCTAATT
1 TCAT--TAGGATACAGGATATTGATGCTTTGGTTTCGCAAGAAAAGCTTTTCTTACCACCT--TT
** * ** * * * * * *
172887 TTTGTAAAGTCTTA-TTTCGTGC-CTTAAATGAGACAAACAT-TGATTC-TAGTAATGATCTTCA
62 TTCATAAAATCAAAGTTT-GT-CTCTTAAATAAGACAAACATGAGAGTCATACTAAT--CCCT-A
** * * * * * *
172948 TTCCTTTT-GTGATTAGGCGCTACAAACACATTCTCC
122 TT-CTTTTCAAGATTAGGCACCATAAACATAGTCTTC
* * * * ** * * * * * **
172984 TCATTAGGATAAATGTTATTGATGATTTTCTTTTGCATTGGAAATCTTCTCTTTGC-CCTATTTA
1 TCATTAGGATACAGGATATTGATGCTTTGGTTTCGCA-AGAAAAGCTTTTCTTACCACCT-TTT-
* * ** * * * * *** * * * *
173048 CCTTAAAATCAAAGTTCATCCCTTAAATAAGGCTAGCATCGATTCTCAAAATAGTCTCC-ATTCC
63 TCATAAAATCAAAGTTTGTCTCTTAAATAAGACAAACAT-GAGAGTCATACTAATC-CCTATTCT
* * * * *
173112 TTTCAAGATTAGGAACCAAAAACACATTC-CC
126 TTTCAAGATTAGGCACCATAAACATAGTCTTC
* * * * * ** * *
173143 TTCATTAGGATATACGACATTTATACTTTGGTGACGCAAAAAAAGCAGTTTCTTACCACCGTTTT
1 -TCATTAGGATACAGGATATTGATGCTTTGGTTTCGCAAGAAAAGC-TTTTCTTACCACC-TTTT
* * * * * * *
173208 TGATAGAATCAAAGTTTATGTCTTAAATAAGAGAAAC-TAGAATAGTCATACTAATCCCTGTTCT
63 TCATAAAATCAAAGTTTGTCTCTTAAATAAGACAAACAT-G-AGAGTCATACTAATCCCTATTCT
** *
173272 TTTCAAGATTAGGCACCATAAAGGTAGTCTTT
126 TTTCAAGATTAGGCACCATAAACATAGTCTTC
* * * * * * *
173304 TCATAAGGATACACGATATTAATGCTTTGGTTTTGAAAGAAAGGC-TTTCCT-CC-CCTTAATTT
1 TCATTAGGATACAGGATATTGATGCTTTGGTTTCGCAAGAAAAGCTTTTCTTACCACCTT--TTT
** * * * * ** *
173366 --T--TGT-AAAGTTTGCTTCATGCCTTAAATGAGACAAACAT-TGATTCA-AGTAAAGAACTTC
64 CATAAAATCAAAGTTTG--TC-T--CTTAAATAAGACAAACATGAGAGTCATACT-AA-TCCCT-
** * * * *
173424 ATTCATTTT-GGGATTAGGCACTATAAACACATTCTCC
121 ATTC-TTTTCAAGATTAGGCACCATAAACATAGTCTTC
* * * ** ** * * * * **
173461 TCATTAGGATAAATGTTATTAATGATTTTTTTTTTTTTGCATGGAAATCTTTTCTTTGC-CCTAT
1 TCATTAGGATACA-G-GA-TATTGA-TGCTTTGGTTTCGCAAGAAAAGCTTTTCTTACCACCT-T
* * ** * * *** * ** * *
173525 TTACCTTAAAATCAAAGTTCATCCCTCAAATAAGGTGAGCATCGA-TCTCGTAAC-AGTCTCC-A
61 TT-TCATAAAATCAAAGTTTGTCTCTTAAATAAGACAAACAT-GAGAGTCAT-ACTAATC-CCTA
* * * * * * *
173587 TTCTTTTCAAGATTGGGAATCAAAAACACAATC-CC
122 TTCTTTTCAAGATTAGGCACCATAAACATAGTCTTC
* ** ** * * * *
173622 TTAATTAGGATAC-GTGACGTTGATGCTTTGGTGACGCAAAAAAAAACGTTTCTTACCGCCATTT
1 -TCATTAGGATACAG-GATATTGATGCTTTGGTTTCGC-AAGAAAAGCTTTTCTTACCACC-TTT
* * * * *
173686 TTGATAGAATCAAAGTTTGTCTCTTAAATAA-AGGAAAC-TAGAATAGTCATAGTAATCCCTATT
62 TTCATAAAATCAAAGTTTGTCTCTTAAATAAGA-CAAACAT-G-AGAGTCATACTAATCCCTATT
*
173749 CTTTTCAGGATTAGGCACCATAAACATAGTCTTC
124 CTTTTCAAGATTAGGCACCATAAACATAGTCTTC
* * * * * *
173783 TCATAAGGATACACGATATTGATGCTTTGGTTTTGAAAGAAAGGCTTTT-TT-CCTCCTAATTTT
1 TCATTAGGATACAGGATATTGATGCTTTGGTTTCGCAAGAAAAGCTTTTCTTACCACCT--TTTT
** * ** * * * * * * * * *
173846 TGTAAAGTCTGACTTTATGC-CTTAAATGAGATAAACTAT-TGATTC-TAGTAATTATCTTCATT
64 CATAAAATCAAAGTTTGT-CTCTTAAATAAGACAAAC-ATGAGAGTCATACTAA-T-CCCT-ATT
** * * * * *
173908 CATTTT-GTGATTA-GCTACTACAAACACAATCTCC
124 C-TTTTCAAGATTAGGC-ACCATAAACATAGTCTTC
** ** ** * * * ** **
173942 TCATTAGGATA-AATATTATTGATAATTTTCTTTTGCATGGAAATATTTTCTTTGC-CCTATTTA
1 TCATTAGGATACAGGA-TATTGATGCTTTGGTTTCGCAAGAAAAGCTTTTCTTACCACCT-TTT-
* * * ** * ** * *** * *
174005 CCTTAAAACCAAAGTTCATCCCTTAAATAAGGGAAGCATCGATTCTCGTAAC-AATCTCTATTCT
63 TCATAAAATCAAAGTTTGTCTCTTAAATAAGACAAACAT-GAGAGTCAT-ACTAATCCCTATTCT
* * * * * *
174069 TCTCAAGATTAGGGACCAAAAACACATTCCT-
126 TTTCAAGATTAGGCACCATAAACATAGTCTTC
* * * * * **
174100 TCATTACGTTACAAGACATTGATGCTTTGGTGAT-GCGAA-AAAAGCTTTTCTTACCATTGTTTT
1 TCATTAGGATACAGGATATTGATGCTTTGGT-TTCGC-AAGAAAAGCTTTTCTTACCA-CCTTTT
* * * *
174163 TTATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAAGAGTCATAATAATCCCTCTTCTT
63 TCATAAAATCAAAGTTTGTCTCTTAAATAAGACAAACATG-AGAGTCATACTAATCCCTATTCTT
* * *
174228 TTCATGATTAGGCAGCATAAACATAGTCCTC
127 TTCAAGATTAGGCACCATAAACATAGTCTTC
** * * * * *
174259 TC-TTAAGGATACACAACATTGATGCTTTGGTTTTGCAAAAAAAGCTTTT-TTCCCAGCAATTTT
1 TCATT-AGGATACAGGATATTGATGCTTTGGTTTCGCAAGAAAAGCTTTTCTTACCA-C-CTTTT
* * *** * * * * * * ** *
174322 T-GTAAAGTTTGACTTCGTGC-CTCAATTGAGACAAACATG-GATTC-TTGTAATGCCCTTCTTT
63 TCATAAAATCAAAGTTTGT-CTCTTAAATAAGACAAACATGAGAGTCATACTAAT-CCC-T-ATT
** * * * *
174383 CATTTT-GTGATTAGGTACTATAAACACATTCTTC
124 C-TTTTCAAGATTAGGCACCATAAACATAGTCTTC
* * * * * ** * * **
174417 ACATTAGGATAAAGGATAATGATGACTTT-CTTTTGCTTGAAAATCTTTTGTT--TGCCTTATTT
1 TCATTAGGATACAGGATATTGATG-CTTTGGTTTCGCAAGAAAAGCTTTTCTTACCACCTT-TTT
* * ** * * * * * * * *
174479 ACCTTAAAATTAAAGTTCATCCCTTAAATAAGGCAAGCGTTGA-ATCTCGTAATAGTCTCC-ATT
64 --CATAAAATCAAAGTTTGTCTCTTAAATAAGACAAAC-ATGAGA-GTCATACTAATC-CCTATT
* * * * * * *
174542 CTTCTCAATATTAGGAACCAAAAACACATTCTTT
124 CTTTTCAAGATTAGGCACCATAAACATAGTCTTC
* * * * * * * *
174576 TTATTAGGATACATGACATTGATGCTATGGTGAT-GGAAAAAAAGCTTTTCTTACCATCGTTTTT
1 TCATTAGGATACAGGATATTGATGCTTTGGT-TTCGCAAGAAAAGCTTTTCTTACCA-CCTTTTT
* * * * *
174640 GATACAATCAAAGTTTGCCTCTTTAATAAGACAAACATGAAGAGTCATACT-ATTCCTATTCTTT
64 CATAAAATCAAAGTTTGTCTCTTAAATAAGACAAACATG-AGAGTCATACTAATCCCTATTCTTT
* *
174704 TCAAGATTAGGCCCCATAAACATAGCCTTC
128 TCAAGATTAGGCACCATAAACATAGTCTTC
* * * * *
174734 TCATAAGGATACACGATATTGATGCTTTAGTTTCGCAAGAAAAGCTTAT-TTCCCACCAATTTTT
1 TCATTAGGATACAGGATATTGATGCTTTGGTTTCGCAAGAAAAGCTTTTCTTACCACC--TTTTT
* * ** * * * * * * * *
174798 -GTAAAGTCTGACTTCGAGC-CTCAATTGAGACAAACATG-GATTC-TAGTAATGCCCTTAATTC
64 CATAAAATCAAAGTTTG-TCTCTTAAATAAGACAAACATGAGAGTCATACTAAT-CCC-T-ATTC
** * ** *
174859 ATTTT-GTGCTTAGGCAATATAAAC-TCATTCTTC
125 -TTTTCAAGATTAGGCACCATAAACAT-AGTCTTC
* * * * * ** * * * * ***
174892 ACATTACGATAAAGGATAATGATGATTTTTTTTTGCATGGAAATCTTTTCTT--TGTCTTATTTA
1 TCATTAGGATACAGGATATTGATGCTTTGGTTTCGCAAGAAAAGCTTTTCTTACCACCTT-TTT-
* ** * * * *** * *
174955 CCTTAAAATCAAAGTTCATCCCTTAAATAAGGCAAGCATCGATTCTCTAAAC-AGTCTCC-ATTC
64 -CATAAAATCAAAGTTTGTCTCTTAAATAAGACAAACAT-GAGAGTC-ATACTAATC-CCTATTC
** * * * *
175018 TTTTCAAGATTAGAAACTAAAAACA-CGT-TCCC
125 TTTTCAAGATTAGGCACCATAAACATAGTCT-TC
* ** * * *
175050 TTCATTAGGATACAAGG-CATTGATGCTTTGGTGACACAAAAAAAGCTTTTCTTACCACCGTTTT
1 -TCATTAGGATAC-AGGATATTGATGCTTTGGTTTCGCAAGAAAAGCTTTTCTTACCACCTTTTT
175114 CATAAAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAAGAGTCATACTAATCCCTATTCTTT
64 CATAAAATCAAAGTTTGTCTCTTAAATAAGACAAACATG-AGAGTCATACTAATCCCTATTCTTT
175179 TCAAGATTAGGCACCATAAACATAGTCTTC
128 TCAAGATTAGGCACCATAAACATAGTCTTC
* ** *
175209 TCATAAGGATACTTGATATTGATGCTTTGGTTTCGCAAGAAAAGCTTTT-TTCCCACCAATTTTT
1 TCATTAGGATACAGGATATTGATGCTTTGGTTTCGCAAGAAAAGCTTTTCTTACCACC--TTTTT
* * *** * * * * * * *
175273 -GTAAAGTTTGACTTCGTGTCTCAATTGAGACAAACATG-G-GTTC-TAGTAATGCCCTTATTTC
64 CATAAAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAGAG-TCATACTAAT-CCC-TA-TTC
** * * *
175334 ATTTT-GTGATTAGGCACTATAAACACAATCTTC
125 -TTTTCAAGATTAGGCACCATAAACATAGTCTTC
* * * * ** * * ** * **
175367 ACATTAGGATAAAGGATAATGATGATTTTCTTTTGCATGAAAATATTTTGTT--TGCCTTATTTA
1 TCATTAGGATACAGGATATTGATGCTTTGGTTTCGCAAGAAAAGCTTTTCTTACCACCTT-TTT-
* * * * * * *** * *
175430 CCTTAAAATCAAAGCTTATCCCTTAAATAAGGCAAGCATTGATTCTCGTAAC-AGTCTCC-ATTC
64 -CATAAAATCAAAGTTTGTCTCTTAAATAAGACAAACA-TGAGAGTCAT-ACTAATC-CCTATTC
* * * * * * *
175493 TTTTCAATATTGGGAACCAAAAACACATTC-CC
125 TTTTCAAGATTAGGCACCATAAACATAGTCTTC
* * ** * *
175525 TTCATTAGGATACAGGACATTAACACTATGGTCAT-GCAA-AAAAGGCTTTTCTTACCACCATTT
1 -TCATTAGGATACAGGATATTGATGCTTTGGT-TTCGCAAGAAAA-GCTTTTCTTACCACC-TTT
* * *
175588 TTGATAAAATCGAAGTTTGTCTCTTAAATAAGACAAACATGAAGAGTCATCCTAATCCCTATTCT
62 TTCATAAAATCAAAGTTTGTCTCTTAAATAAGACAAACATG-AGAGTCATACTAATCCCTATTCT
*
175653 TTTCACGATTAGGCACCATAAACATAGTCTTC
126 TTTCAAGATTAGGCACCATAAACATAGTCTTC
* * * * * * *
175685 TC-TTAAGGATGCACGATATTAATGCCTTGGTTTTGAAAGAAAGGCTTT
1 TCATT-AGGATACAGGATATTGATGCTTTGGTTTCGCAAGAAAAGCTTT
175733 CTTCCCCCCA
Statistics
Matches: 2648, Mismatches: 947, Indels: 532
0.64 0.23 0.13
Matches are distributed among these distances:
152 7 0.00
153 1 0.00
154 6 0.00
155 45 0.02
156 53 0.02
157 147 0.06
158 905 0.34
159 814 0.31
160 450 0.17
161 98 0.04
162 72 0.03
163 33 0.01
164 6 0.00
165 1 0.00
166 3 0.00
167 1 0.00
168 6 0.00
ACGTcount: A:0.32, C:0.19, G:0.14, T:0.35
Consensus pattern (157 bp):
TCATTAGGATACAGGATATTGATGCTTTGGTTTCGCAAGAAAAGCTTTTCTTACCACCTTTTTCA
TAAAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAGAGTCATACTAATCCCTATTCTTTTCA
AGATTAGGCACCATAAACATAGTCTTC
Found at i:178733 original size:155 final size:155
Alignment explanation
Indices: 178588--178870 Score: 345
Period size: 155 Copynumber: 1.8 Consensus size: 155
178578 TCACCAATTT
* *
178588 TTGTAAAGTCCAACTTCATGCCTTAAATGAGACAAAAATGGATTCTAGTAACAATCTTCATTCAT
1 TTGTAAAGTCCAACTTCATGCCTCAAATGAGACAAAAATGGATTCTAGTAACAACCTTCATTCAT
* * * * * *
178653 -TTGTGATTAGGCACTGTAAACACATT-TTCCTCCTTAGGATAAATGATATTGATGCTTTGCTTT
66 ATTGTGATTAGGCACTATAAACACATTCTT-CACATTAGGATAAAGGATAATGATGATTTGCTTT
*
178716 CACAAGAAAAGCTTTTTTCCCTCAAA
130 CACAAGAAAAGCTTTTTTCACTCAAA
*** ** * ** *** *
178742 TTGTAAAGTTTGACTTTGTGCCTCAATTGAGACAATCATGGATTCTAGTAATGCCCTTCTTTCAT
1 TTGTAAAGTCCAACTTCATGCCTCAAATGAGACAAAAATGGATTCTAGTAACAACCTTCATTCAT
*
178807 ATTGTGATTAGGCACTATAAACACATTCTTCACATTAGGATAAAGGATAATGATGATTTTCTTT
66 ATTGTGATTAGGCACTATAAACACATTCTTCACATTAGGATAAAGGATAATGATGATTTGCTTT
178871 TGTATGAAAA
Statistics
Matches: 106, Mismatches: 21, Indels: 3
0.82 0.16 0.02
Matches are distributed among these distances:
154 51 0.48
155 53 0.50
156 2 0.02
ACGTcount: A:0.31, C:0.17, G:0.15, T:0.37
Consensus pattern (155 bp):
TTGTAAAGTCCAACTTCATGCCTCAAATGAGACAAAAATGGATTCTAGTAACAACCTTCATTCAT
ATTGTGATTAGGCACTATAAACACATTCTTCACATTAGGATAAAGGATAATGATGATTTGCTTTC
ACAAGAAAAGCTTTTTTCACTCAAA
Found at i:178966 original size:628 final size:630
Alignment explanation
Indices: 178126--179355 Score: 1707
Period size: 628 Copynumber: 2.0 Consensus size: 630
178116 GTAAAGACTC
* * *
178126 ACTTCGTGCCTCAAATGAGACAAACATTGATTCGAGTAATAATCTTCATTCATTTTGTAATTAGG
1 ACTTCGTGCCTCAAATGAGACAAACATGGATTCGAGTAATAACCTTCATTCATATTGTAATTAGG
* * * * *
178191 CACTATAAACACATTCTCCTCATTAGGATAAATGTTATTGATGATTTTCTTTTGCATGGAAATAT
66 CACTATAAACACATTCTCCACATTAGGATAAAGGATAATGATGATTTTCTTTTGCATGAAAATAT
178256 TTTATTTGCCTTATTTACCTTAAAATCAAAGTTCATCCCTTAAATAAGGCAAGCATCGATTCTCG
131 TTTATTTGCCTTATTTACCTTAAAATCAAAGTTCATCCCTTAAATAAGGCAAGCATCGATTCTCG
* * * *
178321 TAACAGTTTCTATTCTTTTCAAAATTGGGAACCAAAAACACATTACTTTCATTTGGATACATGAC
196 TAACAGTCTCCATTCTTTTCAAAATTGGGAACCAAAAACACA-TACCTTCATTAGGATACATGAC
* * * * *
178386 GTTGATACTTTGGAGATGCAAAAAGAG-CTTTTCTTACCATAGCTTTTGATAGAATCATAGTTTG
260 ATTGATACTATGGAGATGCAAAAAAAGCCTTTTCTTACCACAGCTTTTGATAGAATCAAAGTTTG
* * *
178450 TCTCTTAAATAAGACAAACATGAAGAGTCATACTAATCCCTATTCTTTTCAAGATTAGGCATCGT
325 TCTCATAAATAAGACAAACATGAAGAGTCATACTAATCCCTATTCTTTTCAAGATTAGGCACCAT
* * * * * **
178515 AAACATAGTCTTATCATAAGGATACATGATATTGATGC-TGGTTTCGTAAGAAAGGTTTTTTTTT
390 AAACATAGTCTTATCATAAGGATACATGATACTGATGCTTGGTTTCGCAAGAAAAGCTTATTTCC
* * *
178579 CACCAATTTTTGTAAAGTCCAACTTC-ATGCCTTAAATGAGACAAAAATGGATTCTAGTAACAAT
455 CACCAATTTTTGTAAAGTCCAACTTCGA-GCCTCAAATAAGACAAAAATGGATTCTAGTAACAAC
* * * * *
178643 CTTCATTCA-TTTGTGATTAGGCACTGTAAACACATT-TTCCTCCTTAGGATAAATGATATTGAT
519 CTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTT-CACATTAGGATAAAGGATAATGAT
*
178706 GCTTTGCTTTCACA-AGAAAAGCTTTTTTCCCTCAAATTGTAAAGTTTG
583 GATTTGCTTT-ACATAGAAAAGCTTTTTTCCCTCAAATTGTAAAGTTTG
* * * * ** * *
178754 ACTTTGTGCCTCAATTGAGACAATCATGGATTCTAGTAATGCCCTTCTTTCATATTGTGATTAGG
1 ACTTCGTGCCTCAAATGAGACAAACATGGATTCGAGTAATAACCTTCATTCATATTGTAATTAGG
* * *
178819 CACTATAAACACATTCTTCACATTAGGATAAAGGATAATGATGATTTTCTTTTGTATGAAAATCT
66 CACTATAAACACATTCTCCACATTAGGATAAAGGATAATGATGATTTTCTTTTGCATGAAAATAT
* * ** *
178884 TTTGTTTGCCTTATTTACCTTAAAATCAAAGTTCATCCCTTAAATAAGGTAAGTGTTGATTCTCG
131 TTTATTTGCCTTATTTACCTTAAAATCAAAGTTCATCCCTTAAATAAGGCAAGCATCGATTCTCG
* *
178949 TAACAGTCTCCATTCTTTTCAATATTGGGAACCAAAAACACATCCCTTCATTAGGATACATGACA
196 TAACAGTCTCCATTCTTTTCAAAATTGGGAACCAAAAACACATACCTTCATTAGGATACATGACA
* * * * * * *
179014 TTGATGCTATGGTGATGCAAAAAAAGCCTTTTTTTACCACCGTTTTTGATATAATGAAAGTTTGT
261 TTGATACTATGGAGATGCAAAAAAAGCCTTTTCTTACCACAGCTTTTGATAGAATCAAAGTTTGT
**
179079 CTCATAAATAAGACAAACATGAAGAGTCATACTAATCCCTATTCTTTTCAAGATTAGGTGCCATA
326 CTCATAAATAAGACAAACATGAAGAGTCATACTAATCCCTATTCTTTTCAAGATTAGGCACCATA
*
179144 AACATAGTCTTCTCATAAGGATACATGATACTGATGCTTTGGTTTCGCAAGAAAAGCTTATTTCC
391 AACATAGTCTTATCATAAGGATACATGATACTGATGC-TTGGTTTCGCAAGAAAAGCTTATTTCC
** * * ***
179209 CACCAATTTTTGTAAAGTCTGACTTCGAGCCTCAATTAAGACAAACATGGATTCTAGTAATGCCC
455 CACCAATTTTTGTAAAGTCCAACTTCGAGCCTCAAATAAGACAAAAATGGATTCTAGTAACAACC
* *
179274 TTCATTCATTTTGTGATTAGGCATTATAAACTCATTCTTCACATTAGGATAAAGGATAATGATGA
520 TTCATTCATTTTGTGATTAGGCACTATAAACACATTCTTCACATTAGGATAAAGGATAATGATGA
*
179339 TTTTCTTTACATAGAAA
585 TTTGCTTTACATAGAAA
179356 TCTTTTCTTT
Statistics
Matches: 521, Mismatches: 74, Indels: 11
0.86 0.12 0.02
Matches are distributed among these distances:
627 41 0.08
628 336 0.64
630 84 0.16
631 58 0.11
632 2 0.00
ACGTcount: A:0.32, C:0.17, G:0.14, T:0.36
Consensus pattern (630 bp):
ACTTCGTGCCTCAAATGAGACAAACATGGATTCGAGTAATAACCTTCATTCATATTGTAATTAGG
CACTATAAACACATTCTCCACATTAGGATAAAGGATAATGATGATTTTCTTTTGCATGAAAATAT
TTTATTTGCCTTATTTACCTTAAAATCAAAGTTCATCCCTTAAATAAGGCAAGCATCGATTCTCG
TAACAGTCTCCATTCTTTTCAAAATTGGGAACCAAAAACACATACCTTCATTAGGATACATGACA
TTGATACTATGGAGATGCAAAAAAAGCCTTTTCTTACCACAGCTTTTGATAGAATCAAAGTTTGT
CTCATAAATAAGACAAACATGAAGAGTCATACTAATCCCTATTCTTTTCAAGATTAGGCACCATA
AACATAGTCTTATCATAAGGATACATGATACTGATGCTTGGTTTCGCAAGAAAAGCTTATTTCCC
ACCAATTTTTGTAAAGTCCAACTTCGAGCCTCAAATAAGACAAAAATGGATTCTAGTAACAACCT
TCATTCATTTTGTGATTAGGCACTATAAACACATTCTTCACATTAGGATAAAGGATAATGATGAT
TTGCTTTACATAGAAAAGCTTTTTTCCCTCAAATTGTAAAGTTTG
Found at i:180819 original size:16 final size:15
Alignment explanation
Indices: 180793--180823 Score: 53
Period size: 16 Copynumber: 2.0 Consensus size: 15
180783 ATGAAAAAGG
180793 ATTTTTTATTATTTT
1 ATTTTTTATTATTTT
180808 ATTTTGTTATTATTTT
1 ATTTT-TTATTATTTT
180824 TTTAATTTTA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 5 0.33
16 10 0.67
ACGTcount: A:0.19, C:0.00, G:0.03, T:0.77
Consensus pattern (15 bp):
ATTTTTTATTATTTT
Found at i:182062 original size:107 final size:107
Alignment explanation
Indices: 181932--182133 Score: 323
Period size: 107 Copynumber: 1.9 Consensus size: 107
181922 TTGCTATTCG
* * *
181932 TGCTTGTTGGAGCTACTGTCATTGCTGCCGTGGAAGCTGCTGCTTGTTGGAGTTGCTGGTTTTGA
1 TGCTCGTTGGAGCTACTGTCATTGCTGCCGTGGAAGCTGCTGCTTGTTGGAGCTGCTGGTTTCGA
* * *
181997 GTGTTTTATGGAGCTGTGGTTCGTGCTTGTGGTGGAAGTTGC
66 GTGCTTTATGGACCTGTGGCTCGTGCTTGTGGTGGAAGTTGC
*
182039 TGCTCGTTGGAGCTACTGTCATTGCTGTCGTGGAAGCTGCTGCTTGTTGGAGCTGCTGGTTTCGA
1 TGCTCGTTGGAGCTACTGTCATTGCTGCCGTGGAAGCTGCTGCTTGTTGGAGCTGCTGGTTTCGA
* *
182104 GTGCTTTGTGGACCTGTTGCTCGTGCTTGT
66 GTGCTTTATGGACCTGTGGCTCGTGCTTGT
182134 TGGAACTTTC
Statistics
Matches: 86, Mismatches: 9, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
107 86 1.00
ACGTcount: A:0.09, C:0.17, G:0.35, T:0.39
Consensus pattern (107 bp):
TGCTCGTTGGAGCTACTGTCATTGCTGCCGTGGAAGCTGCTGCTTGTTGGAGCTGCTGGTTTCGA
GTGCTTTATGGACCTGTGGCTCGTGCTTGTGGTGGAAGTTGC
Found at i:182869 original size:30 final size:31
Alignment explanation
Indices: 182833--182895 Score: 110
Period size: 30 Copynumber: 2.1 Consensus size: 31
182823 TTCTTTCCAT
182833 TTGCATGTGTCCCCCATGATTGCAT-CTACA
1 TTGCATGTGTCCCCCATGATTGCATGCTACA
*
182863 TTGCATGTGTCTCCCATGATTGCATGCTACA
1 TTGCATGTGTCCCCCATGATTGCATGCTACA
182894 TT
1 TT
182896 ACCTTGCATG
Statistics
Matches: 31, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
30 24 0.77
31 7 0.23
ACGTcount: A:0.19, C:0.27, G:0.17, T:0.37
Consensus pattern (31 bp):
TTGCATGTGTCCCCCATGATTGCATGCTACA
Found at i:183725 original size:125 final size:125
Alignment explanation
Indices: 183509--184346 Score: 852
Period size: 125 Copynumber: 6.7 Consensus size: 125
183499 GGTAGTCTTA
* * * * * *
183509 AGGGTCAAAGCCAACAAGCAGACTAAGGGTAGGAAAGTCTCCAAGGTCAAAGCTAACAAGTAGAT
1 AGGGTCAAAGCCGACAGGCAGACTAAGGGAAGGAAAGTCTCCAGGGTCAAAGCTAACAAGCAGAC
* *
183574 TAAGGGAAGGAAAGTCTCTAGGGTCAAAGCTGACAGGCAGACTAAGGGAA-AAAAGTCTCC
66 TAAGGGAAGGAAAGTCTCCA-GGTCAAAGCCGACAGGCAGACTAAGGGAAGAAAAGTCTCC
* * * **
183634 ACGGTCAAAGCCGATAGGCAGACTAAGGGAAGGAAAGTCTCCAGGGTTAAAGCTAACATCCAGAC
1 AGGGTCAAAGCCGACAGGCAGACTAAGGGAAGGAAAGTCTCCAGGGTCAAAGCTAACAAGCAGAC
** * * *
183699 TAAGGGAAGGAAAGTCTTTAGAGTCAAAGCCAATAGGCAGACTAAGGAAAGAAAAGTCTCC
66 TAAGGGAAGGAAAGTCTCCAG-GTCAAAGCCGACAGGCAGACTAAGGGAAGAAAAGTCTCC
* * * * * * ** *
183760 AGGTTCAAAGCCGACTA-GCAAACTTTCA-GGAATGAAAGTCTTCAGGGTTAAAGCCGACAGGCA
1 AGGGTCAAAGCCGAC-AGGCAGAC--TAAGGGAAGGAAAGTCTCCAGGGTCAAAGCTAACAAGCA
* * ** ** * ** * *
183823 TACTAAGGAAAAAAAAGTCTCTTGGGTCAAAGTCGACAACCAGACTAAGGGAAGGAAAGTCTCT
63 GACTAAGGGAAGGAAAGTCTC-CAGGTCAAAGCCGACAGGCAGACTAAGGGAAGAAAAGTCTCC
* *
183887 AGGGTCAAAGCCGACAGGCAGACTAAGGGAAGGAAAGTATCCA--GTCAAAGCTAACAAGCAGAT
1 AGGGTCAAAGCCGACAGGCAGACTAAGGGAAGGAAAGTCTCCAGGGTCAAAGCTAACAAGCAGAC
* * * * *
183950 TGAGGGTAGGAAAGTCTCCAGGATCAAAGCCGACAGGCAGACTGAGGGTAGGAAAGTCTCC
66 TAAGGGAAGGAAAGTCTCCAGG-TCAAAGCCGACAGGCAGACTAAGGGAAGAAAAGTCTCC
* * * * *
184011 AAGATCAAAGCCGACAGGCAGACTAAGGGAAGGAAAGTCTCCAAGGTCAAAG-TCGACAGGCAGA
1 AGGGTCAAAGCCGACAGGCAGACTAAGGGAAGGAAAGTCTCCAGGGTCAAAGCT-AACAAGCAGA
* * * *
184075 CTAA-GGAAAGAAAATCTCCACGGTCAAAGCCGATAGGCAGACTAAGGGAA-AGAAAGTCTCT
65 CTAAGGGAAGGAAAGTCTCCA-GGTCAAAGCCGACAGGCAGACTAAGGGAAGA-AAAGTCTCC
* * ** * *
184136 ATGGTCAAAGCCGATAGATAGACTAAGGGAAGGAAAGTCTCTAGGGTCAAAGCTGACAAGCAGAC
1 AGGGTCAAAGCCGACAGGCAGACTAAGGGAAGGAAAGTCTCCAGGGTCAAAGCTAACAAGCAGAC
* * * * * *
184201 TAAGGGAAGAAAAGTCTCCAAGGTCAAAGCTGA-AGGCAAACTTTA-GGAAGGAAAGTCTCT
66 TAAGGGAAGGAAAGTCTCC-AGGTCAAAGCCGACAGGCAGAC-TAAGGGAAGAAAAGTCTCC
* * * *
184261 AGGGTCAAAGTCGACAGGCAGACTAAGGGAAAGAAAGTCTCCAGGGTCAAAGCTAA-TAGACACA
1 AGGGTCAAAGCCGACAGGCAGACTAAGGGAAGGAAAGTCTCCAGGGTCAAAGCTAACAAG-CAGA
184325 CTAAGGGAAGGAAAGTCTCCAG
65 CTAAGGGAAGGAAAGTCTCCAG
184347 AAGTTTAAAG
Statistics
Matches: 586, Mismatches: 107, Indels: 41
0.80 0.15 0.06
Matches are distributed among these distances:
123 2 0.00
124 104 0.18
125 293 0.50
126 86 0.15
127 97 0.17
128 4 0.01
ACGTcount: A:0.39, C:0.18, G:0.28, T:0.15
Consensus pattern (125 bp):
AGGGTCAAAGCCGACAGGCAGACTAAGGGAAGGAAAGTCTCCAGGGTCAAAGCTAACAAGCAGAC
TAAGGGAAGGAAAGTCTCCAGGTCAAAGCCGACAGGCAGACTAAGGGAAGAAAAGTCTCC
Found at i:184201 original size:167 final size:165
Alignment explanation
Indices: 183509--184346 Score: 862
Period size: 167 Copynumber: 5.0 Consensus size: 165
183499 GGTAGTCTTA
** * * * * *
183509 AGGGTCAAAGCCAACAAGCAGACTAAGGGTAGGAAAGTCTCCAAGGTCAAAGCTAACAAGTAGAT
1 AGGGTCAAAGCTGACAAGCAGACTAAGGGAAGGAAAGTCTCCAAGGTCAAAGC-GACAGGCAGAC
* * *
183574 TAAGGGAAGGAAAGTCTCTAGGGTCAAAGCTGACAGGCAGACTAAGGGAAA-AAAGTCTCCACGG
65 TAA-GGAAGGAAAGTCTCCA-GGTCAAAGCCGACAGGCAGACTAAGGGAAAGAAAGTCTCCAGGG
183638 TCAAAGCCGATAGGCAGACTAAGGGAAGGAAAGTCTCC
128 TCAAAGCCGATAGGCAGACTAAGGGAAGGAAAGTCTCC
* * ** ** * *
183676 AGGGTTAAAGCTAACATCCAGACTAAGGGAAGGAAAGTCT-TTAGAGTCAAAGCCAATAGGCAGA
1 AGGGTCAAAGCTGACAAGCAGACTAAGGGAAGGAAAGTCTCCAAG-GTCAAAG-CGACAGGCAGA
* * * * *
183740 CTAAGGAAAGAAAAGTCTCCAGGTTCAAAGCCGACTA-GCAAACTTTCA-GGAATGAAAGTCTTC
64 CTAAGG-AAGGAAAGTCTCCAGG-TCAAAGCCGAC-AGGCAGAC--TAAGGGAAAGAAAGTCTCC
* * * * ** *
183803 AGGGTTAAAGCCGACAGGCATACTAAGGAAAAAAAAGTCTCT
124 AGGGTCAAAGCCGATAGGCAGACTAAGGGAAGGAAAGTCTCC
* * * *
183845 TGGGTCAAAG-TCGACAACCAGACTAAGGGAAGGAAAGTCTCTAGGGTCAAAGCCGACAGGCAGA
1 AGGGTCAAAGCT-GACAAGCAGACTAAGGGAAGGAAAGTCTCCAAGGTCAAAG-CGACAGGCAGA
* ** * * * * * *
183909 CTAAGGGAAGGAAAGTATCCA-GTCAAAGCTAACAAGCAGATTGAGGGTAGGAAAGTCTCCAGGA
64 CTAA-GGAAGGAAAGTCTCCAGGTCAAAGCCGACAGGCAGACTAAGGGAAAGAAAGTCTCCAGGG
* * *
183973 TCAAAGCCGACAGGCAGACTGAGGGTAGGAAAGTCTCC
128 TCAAAGCCGATAGGCAGACTAAGGGAAGGAAAGTCTCC
* * * *
184011 AAGATCAAAGCCGACAGGCAGACTAAGGGAAGGAAAGTCTCCAAGGTCAAAGTCGACAGGCAGAC
1 AGGGTCAAAGCTGACAAGCAGACTAAGGGAAGGAAAGTCTCCAAGGTCAAAG-CGACAGGCAGAC
* * * * *
184076 TAAGGAAAGAAAATCTCCACGGTCAAAGCCGATAGGCAGACTAAGGGAAAGAAAGTCTCTATGGT
65 TAAGGAAGGAAAGTCTCCA-GGTCAAAGCCGACAGGCAGACTAAGGGAAAGAAAGTCTCCAGGGT
** *
184141 CAAAGCCGATAGATAGACTAAGGGAAGGAAAGTCTCT
129 CAAAGCCGATAGGCAGACTAAGGGAAGGAAAGTCTCC
* *
184178 AGGGTCAAAGCTGACAAGCAGACTAAGGGAAGAAAAGTCTCCAAGGTCAAAGCTGA-AGGCAAAC
1 AGGGTCAAAGCTGACAAGCAGACTAAGGGAAGGAAAGTCTCCAAGGTCAAAGC-GACAGGCAGAC
* * *
184242 TTTAGGAAGGAAAGTCTCTAGGGTCAAAGTCGACAGGCAGACTAAGGGAAAGAAAGTCTCCAGGG
65 -TAAGGAAGGAAAGTCTCCA-GGTCAAAGCCGACAGGCAGACTAAGGGAAAGAAAGTCTCCAGGG
** * *
184307 TCAAAGCTAATAGACACACTAAGGGAAGGAAAGTCTCC
128 TCAAAGCCGATAGGCAGACTAAGGGAAGGAAAGTCTCC
184345 AG
1 AG
184347 AAGTTTAAAG
Statistics
Matches: 551, Mismatches: 102, Indels: 36
0.80 0.15 0.05
Matches are distributed among these distances:
165 15 0.03
166 118 0.21
167 295 0.54
168 8 0.01
169 111 0.20
170 4 0.01
ACGTcount: A:0.39, C:0.18, G:0.28, T:0.15
Consensus pattern (165 bp):
AGGGTCAAAGCTGACAAGCAGACTAAGGGAAGGAAAGTCTCCAAGGTCAAAGCGACAGGCAGACT
AAGGAAGGAAAGTCTCCAGGTCAAAGCCGACAGGCAGACTAAGGGAAAGAAAGTCTCCAGGGTCA
AAGCCGATAGGCAGACTAAGGGAAGGAAAGTCTCC
Found at i:184346 original size:42 final size:42
Alignment explanation
Indices: 183509--184346 Score: 798
Period size: 42 Copynumber: 20.0 Consensus size: 42
183499 GGTAGTCTTA
** * *
183509 AGGGTCAAAGCCAACAAGCAGACTAAGGGTAGGAAAGTCTCC
1 AGGGTCAAAGCTGACAGGCAGACTAAGGGAAGGAAAGTCTCC
* * * * * *
183551 AAGGTCAAAGCTAACAAGTAGATTAAGGGAAGGAAAGTCTCT
1 AGGGTCAAAGCTGACAGGCAGACTAAGGGAAGGAAAGTCTCC
*
183593 AGGGTCAAAGCTGACAGGCAGACTAAGGGAA-AAAAGTCTCC
1 AGGGTCAAAGCTGACAGGCAGACTAAGGGAAGGAAAGTCTCC
* * *
183634 ACGGTCAAAGCCGATAGGCAGACTAAGGGAAGGAAAGTCTCC
1 AGGGTCAAAGCTGACAGGCAGACTAAGGGAAGGAAAGTCTCC
* * ** **
183676 AGGGTTAAAGCTAACATCCAGACTAAGGGAAGGAAAGTCTTT
1 AGGGTCAAAGCTGACAGGCAGACTAAGGGAAGGAAAGTCTCC
* ** * * *
183718 AGAGTCAAAGCCAATAGGCAGACTAAGGAAAGAAAAGTCTCC
1 AGGGTCAAAGCTGACAGGCAGACTAAGGGAAGGAAAGTCTCC
* * * * * *
183760 AGGTTCAAAGCCGACTA-GCAAACTTTCA-GGAATGAAAGTCTTC
1 AGGGTCAAAGCTGAC-AGGCAGAC--TAAGGGAAGGAAAGTCTCC
* * * * ** *
183803 AGGGTTAAAGCCGACAGGCATACTAAGGAAAAAAAAGTCTCT
1 AGGGTCAAAGCTGACAGGCAGACTAAGGGAAGGAAAGTCTCC
* ** *
183845 TGGGTCAAAG-TCGACAACCAGACTAAGGGAAGGAAAGTCTCT
1 AGGGTCAAAGCT-GACAGGCAGACTAAGGGAAGGAAAGTCTCC
* *
183887 AGGGTCAAAGCCGACAGGCAGACTAAGGGAAGGAAAGTATCC
1 AGGGTCAAAGCTGACAGGCAGACTAAGGGAAGGAAAGTCTCC
* * * * *
183929 A--GTCAAAGCTAACAAGCAGATTGAGGGTAGGAAAGTCTCC
1 AGGGTCAAAGCTGACAGGCAGACTAAGGGAAGGAAAGTCTCC
* * * *
183969 AGGATCAAAGCCGACAGGCAGACTGAGGGTAGGAAAGTCTCC
1 AGGGTCAAAGCTGACAGGCAGACTAAGGGAAGGAAAGTCTCC
* * *
184011 AAGATCAAAGCCGACAGGCAGACTAAGGGAAGGAAAGTCTCC
1 AGGGTCAAAGCTGACAGGCAGACTAAGGGAAGGAAAGTCTCC
* * *
184053 AAGGTCAAAG-TCGACAGGCAGACTAA-GGAAAGAAAATCTCC
1 AGGGTCAAAGCT-GACAGGCAGACTAAGGGAAGGAAAGTCTCC
* * * * *
184094 ACGGTCAAAGCCGATAGGCAGACTAAGGGAAAGAAAGTCTCT
1 AGGGTCAAAGCTGACAGGCAGACTAAGGGAAGGAAAGTCTCC
* * * ** *
184136 ATGGTCAAAGCCGATAGATAGACTAAGGGAAGGAAAGTCTCT
1 AGGGTCAAAGCTGACAGGCAGACTAAGGGAAGGAAAGTCTCC
* *
184178 AGGGTCAAAGCTGACAAGCAGACTAAGGGAAGAAAAGTCTCC
1 AGGGTCAAAGCTGACAGGCAGACTAAGGGAAGGAAAGTCTCC
* * * *
184220 AAGGTCAAAGCTGA-AGGCAAACTTTA-GGAAGGAAAGTCTCT
1 AGGGTCAAAGCTGACAGGCAGAC-TAAGGGAAGGAAAGTCTCC
*
184261 AGGGTCAAAG-TCGACAGGCAGACTAAGGGAAAGAAAGTCTCC
1 AGGGTCAAAGCT-GACAGGCAGACTAAGGGAAGGAAAGTCTCC
* * * *
184303 AGGGTCAAAGCTAATAGACACACTAAGGGAAGGAAAGTCTCC
1 AGGGTCAAAGCTGACAGGCAGACTAAGGGAAGGAAAGTCTCC
184345 AG
1 AG
184347 AAGTTTAAAG
Statistics
Matches: 656, Mismatches: 122, Indels: 36
0.81 0.15 0.04
Matches are distributed among these distances:
40 34 0.05
41 105 0.16
42 484 0.74
43 31 0.05
44 2 0.00
ACGTcount: A:0.39, C:0.18, G:0.28, T:0.15
Consensus pattern (42 bp):
AGGGTCAAAGCTGACAGGCAGACTAAGGGAAGGAAAGTCTCC
Found at i:187242 original size:13 final size:13
Alignment explanation
Indices: 187224--187249 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
187214 CAATTTTTTG
187224 TGTATCGATACAT
1 TGTATCGATACAT
187237 TGTATCGATACAT
1 TGTATCGATACAT
187250 ACTTGCTGTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:187953 original size:38 final size:40
Alignment explanation
Indices: 187869--187953 Score: 95
Period size: 38 Copynumber: 2.2 Consensus size: 40
187859 TTTTCTTTTA
* *
187869 TTTCTCCCTTAATCAAAATAAATTTAACAAATTTGTACAT
1 TTTCCCCCTTAATCAAAATAAATTTAACAAATTTATACAT
* * *
187909 TCTCCCCCTTAAT-AAAAT-AATTGTAGC-AATTTATGCAT
1 TTTCCCCCTTAATCAAAATAAATT-TAACAAATTTATACAT
187947 TTTCCCC
1 TTTCCCC
187954 TTTATCTCCC
Statistics
Matches: 38, Mismatches: 6, Indels: 4
0.79 0.12 0.08
Matches are distributed among these distances:
38 19 0.50
39 8 0.21
40 11 0.29
ACGTcount: A:0.34, C:0.22, G:0.05, T:0.39
Consensus pattern (40 bp):
TTTCCCCCTTAATCAAAATAAATTTAACAAATTTATACAT
Found at i:189815 original size:13 final size:13
Alignment explanation
Indices: 189797--189822 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
189787 ATAATTACCC
189797 TGTATCGATACAA
1 TGTATCGATACAA
189810 TGTATCGATACAA
1 TGTATCGATACAA
189823 AGAAAAATGT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:191920 original size:15 final size:15
Alignment explanation
Indices: 191900--191930 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
191890 ATTTCGTTTG
*
191900 GAGCTTCTTCATTTT
1 GAGCTTCCTCATTTT
191915 GAGCTTCCTCATTTT
1 GAGCTTCCTCATTTT
191930 G
1 G
191931 GACATTTTTA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.13, C:0.23, G:0.16, T:0.48
Consensus pattern (15 bp):
GAGCTTCCTCATTTT
Found at i:193763 original size:21 final size:21
Alignment explanation
Indices: 193734--193778 Score: 56
Period size: 21 Copynumber: 2.1 Consensus size: 21
193724 AAGTTTTCGT
*
193734 TTTTCTTAGCTAAC-TCATTA
1 TTTTCTTAGCCAACTTCATTA
*
193754 TTTTCATTAGCCAACTTCTTTA
1 TTTTC-TTAGCCAACTTCATTA
193776 TTT
1 TTT
193779 CAACTTGCAA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
20 5 0.24
21 8 0.38
22 8 0.38
ACGTcount: A:0.22, C:0.20, G:0.04, T:0.53
Consensus pattern (21 bp):
TTTTCTTAGCCAACTTCATTA
Found at i:196015 original size:13 final size:13
Alignment explanation
Indices: 195997--196022 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
195987 CAATTTTTTG
195997 TGTATCGATACAT
1 TGTATCGATACAT
196010 TGTATCGATACAT
1 TGTATCGATACAT
196023 ACTTGCTGTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:202311 original size:476 final size:475
Alignment explanation
Indices: 201275--215797 Score: 17324
Period size: 476 Copynumber: 31.0 Consensus size: 475
201265 CACGTTGCGA
* * * * * *
201275 TAGCATACATGACATTGATGCTTTAGTGGCACAAAATACGCTTTTCCTACCACCGTTTTTGATAA
1 TAGCGTACATGACATTGATGCTTTGGTGACGCAAAATACGCTTTTCCTACCACTGTTTTTGATAG
* * * *
201340 AATCAAAGTTTGTCTCTCAAATAAGATAAACTAGAATAGTCATACTAAT-CTTGTTCTTTTCTGG
66 AATCAAAGTTTGTCTCTTAAATAAGAGAAACTAGAATAGTCAAACTAATCCCTGTTCTTTTCTGG
* * * * * *
201404 GTTAGGCACCATGAACAGTAGTCTCCTCATAAGGACACACGACATTCATGTTTTGGTTTTGAAAG
131 ATTAGGCACCATAAAC-GTAGTCTTCTCATAAGGATACACGATATTCATGCTTTGGTTTTGAAAG
* *
201469 AAAGGTTTTCTTCCCCCAATTTTTGTAAAGTCTGACTTTGTGCCTCAAACGAGACAAACATTGAT
195 AAAGGCTTTCTTCCCCCAATTTTTGTAAAGTCTGACTTCGTGCCTCAAACGAGACAAACATTGAT
* **
201534 TCTAGTAATGGCCTTCATTCATTTTGTAATTAGGCACTATAAACACATTCTACACATTAGTTTAA
260 TCTAGTAATGGCCTTCATTCATTTTGTAATTAGGCACTATAAACACATTCTTCACATTAGGATAA
* * * * *
201599 AGGGTAATGATGATTTTCTTTTGCATGGAAATATTTTCTTTGGCTTATTTACTTTAAAATCAAAG
325 AGGATAATGATGATTTTCTTTTGCATGAAAATCTTTTCTTTGCCTTATTTACATTAAAATCAAAG
* * * * *
201664 TTTATCCCTTAAATAAGGCAAGCATCGATTCTCGTAACAGTTTCCATTCTTTTTAAGATTGAG-A
390 TTCATCCCTTAAATAAGGCAAGCATCGATTCTCGTAATAGTCTCCATTCTTTTCAAGATTGGGAA
* * *
201728 GCAAAAGCACATTCCCTTCAT
455 ACAAAAACACATTCCTTTCAT
* * * * * * *
201749 TAG-GATACATGACATTGAGGCTTTGGAGACACAAAA-AGAGCATTTCTTACCACCGTTTTTGAT
1 TAGCG-TACATGACATTGATGCTTTGGTGACGCAAAATA-CGCTTTTCCTACCACTGTTTTTGAT
* *
201812 AGAATCAAAGTTTGTCATCTTAAATAAAAGAAACTAGAATAGTCATACTAATCCCTGTTCTTTTC
64 AGAATCAAAGTTTGTC-TCTTAAATAAGAGAAACTAGAATAGTCAAACTAATCCCTGTTCTTTTC
*
201877 TGGATTAGGCACCATAAACGTAGTCTTCTCATAAGGATACACGATATACATGCTTTGGTTTTGAA
128 TGGATTAGGCACCATAAACGTAGTCTTCTCATAAGGATACACGATATTCATGCTTTGGTTTTGAA
* *
201942 TGAAAGGCTTTCTTCCCCCTAATTTTTGTAAAGTCTGACTTCGTGCCTCAAATGAGACAAACATT
193 AGAAAGGCTTTCTTCCCCC-AATTTTTGTAAAGTCTGACTTCGTGCCTCAAACGAGACAAACATT
* * *
202007 GATTCTAGTAATGGCCTTCATTCATTTTGCAATTAAGCACTATAAACACATTTTTCACATTAGGA
257 GATTCTAGTAATGGCCTTCATTCATTTTGTAATTAGGCACTATAAACACATTCTTCACATTAGGA
* * * *
202072 TAAAGGATAAGGATGATTTTCTTTTGCATGGAAATCATTTCTTTGCCTTTTTTACATTAAAATCA
322 TAAAGGATAATGATGATTTTCTTTTGCATGAAAATCTTTTCTTTGCCTTATTTACATTAAAATCA
* * *
202137 AAGTTCATCCCTTAAATAAGGCAAGCATTGATTCTCATAATAGTCTCCATTTTTTTCAAGATTGG
387 AAGTTCATCCCTTAAATAAGGCAAGCATCGATTCTCGTAATAGTCTCCATTCTTTTCAAGATTGG
**
202202 GAAACAAAAACACATTATTTTCAT
452 GAAACAAAAACACATTCCTTTCAT
* * * * *
202226 TAGCATCCATGACATTGATGCCTTGGTGACGCAAAATACACTTTTCCTATCACTGTTTTTGATAG
1 TAGCGTACATGACATTGATGCTTTGGTGACGCAAAATACGCTTTTCCTACCACTGTTTTTGATAG
* * *
202291 AATCAAAGTTTGTCTCTTAAATAAGATAAACTACAATAGTCACACTAATCCCTGTTCTTTTCTGG
66 AATCAAAGTTTGTCTCTTAAATAAGAGAAACTAGAATAGTCAAACTAATCCCTGTTCTTTTCTGG
* * *
202356 GTTAGGCACCATAAACATAGTCTTCTCATAAGGATACGA-GATATTCATGTTTTGGTTTTGAAAG
131 ATTAGGCACCATAAACGTAGTCTTCTCATAAGGATAC-ACGATATTCATGCTTTGGTTTTGAAAG
* * * * * *
202420 AAAGGCTTTCTTCCACCTAATTTTTGTAGAGTCAGACATCATGCCTCAAACGAGATAAACATTGA
195 AAAGGCTTTCTTCC-CCCAATTTTTGTAAAGTCTGACTTCGTGCCTCAAACGAGACAAACATTGA
* * * *
202485 TTCCAGTAATGGCCTTCATTCATTTTGTAATTAGGCGCTATAAAAACATTCTTCATATTAGGATA
259 TTCTAGTAATGGCCTTCATTCATTTTGTAATTAGGCACTATAAACACATTCTTCACATTAGGATA
* * *
202550 ACGGATAATGATGATTTTCTTTTGCATGAAAGTATTTTCTTTGCCTTATTTACATTAAAATCAAA
324 AAGGATAATGATGATTTTCTTTTGCATGAAAATCTTTTCTTTGCCTTATTTACATTAAAATCAAA
* * * **
202615 GTTCATCTCTTAAAAAAGGCATGCATCGATTCTCACAATAGTCTCCATTCTTTTCAAGATTGGGA
389 GTTCATCCCTTAAATAAGGCAAGCATCGATTCTCGTAATAGTCTCCATTCTTTTCAAGATTGGGA
202680 AACAAAAACACATTCCTTTCAT
454 AACAAAAACACATTCCTTTCAT
* *
202702 TAGCGTACATGACATTGATGCTTTGGTGACACAAAATACGCTTTTCCTACCA-TCGTTTTTGATT
1 TAGCGTACATGACATTGATGCTTTGGTGACGCAAAATACGCTTTTCCTACCACT-GTTTTTGATA
* * * *
202766 GAATCAAAGTTTGTCTTTTAAATAAGATAAAGTAGAATAGTCATACTAATCCCTGTTCTTTTCTG
65 GAATCAAAGTTTGTCTCTTAAATAAGAGAAACTAGAATAGTCAAACTAATCCCTGTTCTTTTCTG
* * *
202831 GGTTAGGCACCATAAACGTAGTCTT-TCATAAGGATACACGATATTCATGTTTTGCTTTT----G
130 GATTAGGCACCATAAACGTAGTCTTCTCATAAGGATACACGATATTCATGCTTTGGTTTTGAAAG
* * * * *
202891 AAAGGTTTTTTTCCCCCCAATTTTTGTAAAGTTTGACTTCTTGCCTCAAACCAGACAAACATTGA
195 AAAGGCTTTCTT-CCCCCAATTTTTGTAAAGTCTGACTTCGTGCCTCAAACGAGACAAACATTGA
* *
202956 TTCTAGTAATGGCCTTCATTCATTTTGTAATTAGGCACTATAAACACATTCTACACATTAGGGTA
259 TTCTAGTAATGGCCTTCATTCATTTTGTAATTAGGCACTATAAACACATTCTTCACATTAGGATA
* * *
203021 AAGGATAATGATGATTTTCTTTTGCATAAAAATCTTTTCTTTGCCTTATTTACCTTGAAATCAAA
324 AAGGATAATGATGATTTTCTTTTGCATGAAAATCTTTTCTTTGCCTTATTTACATTAAAATCAAA
* * * * *
203086 GTTCATCCCCTAAATTAGGCATA-CATCGATTCTCATAAAAGTCTCCATTCTTTTCAAGATTAGG
389 GTTCATCCCTTAAATAAGGCA-AGCATCGATTCTCGTAATAGTCTCCATTCTTTTCAAGATTGGG
* *
203150 AAACAAAAAAATATTCCTTTCAT
453 AAACAAAAACACATTCCTTTCAT
**
203173 TAGCGTACATGACATTGATGCTTTGGTGACGCAAAATACGCTTTTCCTACCACCATTTTTGATAG
1 TAGCGTACATGACATTGATGCTTTGGTGACGCAAAATACGCTTTTCCTACCACTGTTTTTGATAG
* * * * * *
203238 AATCAAAGTTTGTCTGTTAAATAAGATAAACTAGAATAGTCATACTAATCCCTATTTTTTTTTCG
66 AATCAAAGTTTGTCTCTTAAATAAGAGAAACTAGAATAGTCAAACTAATCCCTGTTCTTTTCT-G
* * *
203303 GATTAGGCACTATAAACGTAGTCTTCTCATAAGGATACACGATATTCAAGCTTTGGTTTAGAAAG
130 GATTAGGCACCATAAACGTAGTCTTCTCATAAGGATACACGATATTCATGCTTTGGTTTTGAAAG
* * *
203368 AAAGGCTTTCTTCCCCTTAATTTTTGTGAAGTCTGACATCGTGCCTCAAACGAGACAAACATTGA
195 AAAGGCTTTCTTCCCC-CAATTTTTGTAAAGTCTGACTTCGTGCCTCAAACGAGACAAACATTGA
* * * *
203433 TTCCAATAAAGGCCTTCATTCA--TT-T--TT------T-T----ACA---TT---A-T-GG-CA
259 TTCTAGTAATGGCCTTCATTCATTTTGTAATTAGGCACTATAAACACATTCTTCACATTAGGATA
* * ** *
203473 AAGGATAATAACGATTTTCTTCGGCATGAAAATCTTTTCTTTGCCATATTTACATTAAAATCAAA
324 AAGGATAATGATGATTTTCTTTTGCATGAAAATCTTTTCTTTGCCTTATTTACATTAAAATCAAA
* * *
203538 GTTCATCCCTTAAATATGGCATGCATCGATTCTTGTAATAGTCTCCATTCTTTTCAAGATTGGGA
389 GTTCATCCCTTAAATAAGGCAAGCATCGATTCTCGTAATAGTCTCCATTCTTTTCAAGATTGGGA
203603 AACAAAAACACATTCCTTTCAT
454 AACAAAAACACATTCCTTTCAT
** * *
203625 TAGCGTACATGTTATTGATGCTTTGGTGATGCAAAATACGCTTTTCCTACCACTATTTTTGATAG
1 TAGCGTACATGACATTGATGCTTTGGTGACGCAAAATACGCTTTTCCTACCACTGTTTTTGATAG
* * * * * * **
203690 AATCAAAGTTTGTCTCTTAAATACGAGAAACAAGAATTGTTACACTAATACCTGTTCTTTTCAAG
66 AATCAAAGTTTGTCTCTTAAATAAGAGAAACTAGAATAGTCAAACTAATCCCTGTTCTTTTCTGG
* * *
203755 ATTAGGCACCATAAATGTAGTCTTCTCATAAGGATAAATGATATTCATGCTTTGGTTTTGAAAGA
131 ATTAGGCACCATAAACGTAGTCTTCTCATAAGGATACACGATATTCATGCTTTGGTTTTGAAAGA
* * *
203820 AAGGTTTTCTTTGCCCCAATGTTTGTAAAGTCTGACTTCGTGCCTCAAACGAGAC--A-A---A-
196 AAGGCTTTC-TTCCCCCAATTTTTGTAAAGTCTGACTTCGTGCCTCAAACGAGACAAACATTGAT
* *
203878 --TA-T--T-G-----ATTC---TTGTAATTAGGCACTATAAACACATTCTTCATATTAGGGTAA
260 TCTAGTAATGGCCTTCATTCATTTTGTAATTAGGCACTATAAACACATTCTTCACATTAGGATAA
* * * *
203929 AGGATAACGATGATTTTCTTTTGCATGAAAATCTTTTTTTTGGCTTATTTACATTAAAATTAAAG
325 AGGATAATGATGATTTTCTTTTGCATGAAAATCTTTTCTTTGCCTTATTTACATTAAAATCAAAG
* * * * *
203994 TTCATCCCTTAAATAAGGCATGCATCAATTTTTGTAACAGTCTCCATTCTTTTCAAGATTGGGAA
390 TTCATCCCTTAAATAAGGCAAGCATCGATTCTCGTAATAGTCTCCATTCTTTTCAAGATTGGGAA
* *
204059 AC-AAAACACATTCTTTTCGT
455 ACAAAAACACATTCCTTTCAT
* * ** * * * *
204079 TAGCATACCT-AGCATTGATGCTTTGGTGAAACAAAATACGTTTTTCCAACCACCGTTTTTAATA
1 TAGCGTACATGA-CATTGATGCTTTGGTGACGCAAAATACGCTTTTCCTACCACTGTTTTTGATA
* * * * * *
204143 GAATCAAAGTATATCTCTTAAATGAGAGAAAGTAGAATAGTTAAACTAATCCC-GATTCTTTTCG
65 GAATCAAAGTTTGTCTCTTAAATAAGAGAAACTAGAATAGTCAAACTAATCCCTG-TTCTTTTCT
* * * *
204207 GGATTAGGCACCGTCAACGTAGTCTTCTCATAAAGG-TACATGATATTGATGCTTTGGTTTTGAA
129 GGATTAGGCACCATAAACGTAGTCTTCTCAT-AAGGATACACGATATTCATGCTTTGGTTTTGAA
* * *
204271 AGAAAGGCTTTCTTCCCCCTAATTTTTGTAAACTCTGTCTTCATGCCTCAAACGAGACAAAC---
193 AGAAAGGCTTTCTTCCCCC-AATTTTTGTAAAGTCTGACTTCGTGCCTCAAACGAGACAAACATT
* * *
204333 -A---T--TAA-GGCCTTCATTCATTTTGTAATTAGGCACCACAAACGCATTCTTCACATTAGGA
257 GATTCTAGTAATGGCCTTCATTCATTTTGTAATTAGGCACTATAAACACATTCTTCACATTAGGA
*
204391 TAAAGGATAATCATGATTTTCTTTTGCATGAAAATCTTTTCTTTGCCTTATTTACATTAAAATCA
322 TAAAGGATAATGATGATTTTCTTTTGCATGAAAATCTTTTCTTTGCCTTATTTACATTAAAATCA
* * *
204456 AAGTTCATCCCCTAAATAAGCCAAGCATCGATTCTCGTAATAGTCTCCACTT-TTTTCAAGACTG
387 AAGTTCATCCCTTAAATAAGGCAAGCATCGATTCTCGTAATAGTCTCCA-TTCTTTTCAAGATTG
*
204520 GGAAACAAAAACACATTCCTTTCGT
451 GGAAACAAAAACACATTCCTTTCAT
* * * * * *
204545 TAGCGTACCT-AGCATTGATGCTTTGGAGATGCAAAATACTCTTTTCCAACCACCGTTTTTGATA
1 TAGCGTACATGA-CATTGATGCTTTGGTGACGCAAAATACGCTTTTCCTACCACTGTTTTTGATA
* * * * ** *
204609 GAATCAAAGTCTATCCCTTAAATAAGAGAAACTAGAATAGTCAAACAAATCCGGGTTCTTTTCGG
65 GAATCAAAGTTTGTCTCTTAAATAAGAGAAACTAGAATAGTCAAACTAATCCCTGTTCTTTTCTG
* * * *
204674 GATTAAGCACCATAAACGTAGTCTTTTCATAAGGATACATGATATTGATGCTTTGGTTTTGAAAG
130 GATTAGGCACCATAAACGTAGTCTTCTCATAAGGATACACGATATTCATGCTTTGGTTTTGAAAG
* * **
204739 AAAGGCTTTCTTCCCCCTAATTTTTGTAAACTCTGTCTTTATGCCTCAAACGAGACAAAC----A
195 AAAGGCTTTCTTCCCCC-AATTTTTGTAAAGTCTGACTTCGTGCCTCAAACGAGACAAACATTGA
* * *
204800 -T-T-G--A-GGCCTTCATTCATTTTGTAATTAGGCACCACAAACACATTCTTCAGATTAGGATA
259 TTCTAGTAATGGCCTTCATTCATTTTGTAATTAGGCACTATAAACACATTCTTCACATTAGGATA
* *
204859 AAGGACAATGATGATTTTCTTTTGCATGAAAATCTTTTCTTTACCTTATTTACATTAAAATCAAA
324 AAGGATAATGATGATTTTCTTTTGCATGAAAATCTTTTCTTTGCCTTATTTACATTAAAATCAAA
* * *
204924 GTTCATCCCCTAAATAAGGCAAGCATCGATTCTCGTAATAGACTCCACTCTTTTCAAGATTGGGA
389 GTTCATCCCTTAAATAAGGCAAGCATCGATTCTCGTAATAGTCTCCATTCTTTTCAAGATTGGGA
* *
204989 AAGAAAAACATATTCCTTTCAT
454 AACAAAAACACATTCCTTTCAT
* *
205011 TAGCGTACATGACATTGATGCTTTGGTGACGCAAAATTCG-TTGTTCCTACTACTGTTTTTGATA
1 TAGCGTACATGACATTGATGCTTTGGTGACGCAAAATACGCTT-TTCCTACCACTGTTTTTGATA
* * * * * **
205075 AAATCAAAGTTTGTCTCTTAAATAAGATAAACTAGAATAGTCATACTAATCCCTATTTTTTTCCA
65 GAATCAAAGTTTGTCTCTTAAATAAGAGAAACTAGAATAGTCAAACTAATCCCTGTTCTTTTCTG
* * *
205140 GATTAGGCACTATAAACGTAGTCTTCTCATAAGGATACACGATATTCAAGCTTTGGTTTAGAAAG
130 GATTAGGCACCATAAACGTAGTCTTCTCATAAGGATACACGATATTCATGCTTTGGTTTTGAAAG
* * * * *
205205 AAAGGCTTTCTTCCCCCCAATTTTTGTGAAGTCTAACATCGTGCCTTAAATGAGACAAACATTGA
195 AAAGGCTTTCTT-CCCCCAATTTTTGTAAAGTCTGACTTCGTGCCTCAAACGAGACAAACATTGA
* * * **
205270 TTCCAATAAAGGCCTTCATTC--------A-T------T-T-------TT-TT-ACATTAGGGCA
259 TTCTAGTAATGGCCTTCATTCATTTTGTAATTAGGCACTATAAACACATTCTTCACATTAGGATA
* * **
205310 AAGGATAATAACGATTTTCTTCGGCATGAAAATCTTTTCTTTGCCTTATTTACATTAAAATCAAA
324 AAGGATAATGATGATTTTCTTTTGCATGAAAATCTTTTCTTTGCCTTATTTACATTAAAATCAAA
* * * *
205375 GTTCATCCCTTAAATATGGCATGCATCAATTCTTGTAATAGTCTCCATTCTTTTCAAGATTGGGA
389 GTTCATCCCTTAAATAAGGCAAGCATCGATTCTCGTAATAGTCTCCATTCTTTTCAAGATTGGGA
*
205440 AACAAAAACACAATCCTTTCAT
454 AACAAAAACACATTCCTTTCAT
** * *
205462 TAGCGTACATGTTATTGATGCTTTGGTGATGCAAAATACGCTTTTCCTACCACTATTTTTGATAG
1 TAGCGTACATGACATTGATGCTTTGGTGACGCAAAATACGCTTTTCCTACCACTGTTTTTGATAG
* * * * * * **
205527 AATCAAAGTTTGTCTCTTAAATACGAGAAACAAGAATTGTTACACTAATACCTGTTCTTTTCAAG
66 AATCAAAGTTTGTCTCTTAAATAAGAGAAACTAGAATAGTCAAACTAATCCCTGTTCTTTTCTGG
* * *
205592 ATTAGGCACCATAAATGTAGTCTTCTCATAAGGATAAATGATATTCATGCTTTGGTTTTGAAAGA
131 ATTAGGCACCATAAACGTAGTCTTCTCATAAGGATACACGATATTCATGCTTTGGTTTTGAAAGA
* * *
205657 AAGGTTTTCTTTGCCCCAATGTTTGTAAAGTCTGACTTCGTGCCTCAAACGAGAC--A-A---A-
196 AAGGCTTTC-TTCCCCCAATTTTTGTAAAGTCTGACTTCGTGCCTCAAACGAGACAAACATTGAT
* *
205715 --TA-T--T-G-----ATTC---TTGTAATTAGGCACTATAAACACATTCTTCATATTAGGGTAA
260 TCTAGTAATGGCCTTCATTCATTTTGTAATTAGGCACTATAAACACATTCTTCACATTAGGATAA
* * *
205766 AGGATAACGATGATTTTCTTTTGCATGAAAATCTTTT-TTTGGCTTATTTACATTAAAATTAAAG
325 AGGATAATGATGATTTTCTTTTGCATGAAAATCTTTTCTTTGCCTTATTTACATTAAAATCAAAG
* * * *
205830 TTCATCCCTTAAATAAGGCATGCATCAATTTTCGTAACAGTCTCCATTCTTTTCAAGATTGGGAA
390 TTCATCCCTTAAATAAGGCAAGCATCGATTCTCGTAATAGTCTCCATTCTTTTCAAGATTGGGAA
* *
205895 AC-AAAACACATTCATTTCGT
455 ACAAAAACACATTCCTTTCAT
* * * * * ** *
205915 TAGCATACCT-AGCATTGATGCTTTGGTGAAGCAAAATACGTTTTTCCAACCACCATTTTTAATA
1 TAGCGTACATGA-CATTGATGCTTTGGTGACGCAAAATACGCTTTTCCTACCACTGTTTTTGATA
* * * * * * * *
205979 TAATCAAAGTCTATCTCTTAAATGAGAGAAAGTAGAATAGTTAAAGTAATCCC-GATTCTTTTCG
65 GAATCAAAGTTTGTCTCTTAAATAAGAGAAACTAGAATAGTCAAACTAATCCCTG-TTCTTTTCT
* * * ** * *
206043 GGATTAGGCGCCATCAATGTAGTCTTCTCATAAGGGCACATGATATTGATGCTTTGGTTTTGAAA
129 GGATTAGGCACCATAAACGTAGTCTTCTCATAAGGATACACGATATTCATGCTTTGGTTTTGAAA
* *
206108 GAAAGGCTTTCTTCCCCCTAATTTTTGTAAACTCTGTCTTCGTGCCTCAAACGAGACAAAC----
194 GAAAGGCTTTCTTCCCCC-AATTTTTGTAAAGTCTGACTTCGTGCCTCAAACGAGACAAACATTG
* *
206169 A---T--TAA-GGCCTTCATTCATTTTGTAATTAGGCACCACAAACACATTCTTCACATTAGGAT
258 ATTCTAGTAATGGCCTTCATTCATTTTGTAATTAGGCACTATAAACACATTCTTCACATTAGGAT
206228 AAAGGATAATGATGATTTTCTTTTGCATGAAAATCTTTTCTTTGCCTTATTTACATTAAAATCAA
323 AAAGGATAATGATGATTTTCTTTTGCATGAAAATCTTTTCTTTGCCTTATTTACATTAAAATCAA
* * * *
206293 AGTTCATCCCCTAAATAAGCCAAGCATCGATTCTCGTAATAGTCTCCATTTTTTTCAAGATTAGG
388 AGTTCATCCCTTAAATAAGGCAAGCATCGATTCTCGTAATAGTCTCCATTCTTTTCAAGATTGGG
*
206358 AAACAAAAACACATTTCTTTCAT
453 AAACAAAAACACATTCCTTTCAT
* * * * * *
206381 TAGCGTACCT-AGCATTAATGCTTTGGTGATGCAAAATACTCTTTTCCAACCACCGTTTTTGATA
1 TAGCGTACATGA-CATTGATGCTTTGGTGACGCAAAATACGCTTTTCCTACCACTGTTTTTGATA
* * * * * * ** *
206445 GAATCAAAGTCTATCCCTTAAATTAGAGAAACTAGAATAGTCAAACAAATTCGGGTTCTTTTCGG
65 GAATCAAAGTTTGTCTCTTAAATAAGAGAAACTAGAATAGTCAAACTAATCCCTGTTCTTTTCTG
* * * *
206510 GATTAAGCACCATAAACGTAGTCTTTTTATAAGGATACACGATATTGATGCTTTGGTTTTGAAAG
130 GATTAGGCACCATAAACGTAGTCTTCTCATAAGGATACACGATATTCATGCTTTGGTTTTGAAAG
* * * * *
206575 AAAAGCTTTCTTCCCCCTAATTTTTGTAAACTCTGTCTTTGTGCCTCAAATGAGACAAACATTG-
195 AAAGGCTTTCTTCCCCC-AATTTTTGTAAAGTCTGACTTCGTGCCTCAAACGAGACAAACATTGA
* * * *
206639 -----G----GGCCTTTATTCATTTTGTAATTAGGCACCACAAACACATTCTTCAGATTAGGATA
259 TTCTAGTAATGGCCTTCATTCATTTTGTAATTAGGCACTATAAACACATTCTTCACATTAGGATA
* *
206695 AAGGAGAATGATGATTTTCTTTTGCATGAAAATCTTTTCTTTACCTTATTTACATTAAAATCAAA
324 AAGGATAATGATGATTTTCTTTTGCATGAAAATCTTTTCTTTGCCTTATTTACATTAAAATCAAA
* * * * *
206760 GTTCATCCCCTAAATAAGGCAAGCATCGATTCTCATAATAGACTCCACTCTTTTCAAGATTGGAA
389 GTTCATCCCTTAAATAAGGCAAGCATCGATTCTCGTAATAGTCTCCATTCTTTTCAAGATTGGGA
* * *
206825 AAGAAAAACATATTCCTTTAAT
454 AACAAAAACACATTCCTTTCAT
* * * * * * *
206847 TAGCGTACATGACATTAATGCTTTGGTGATGCAAAATTCGCTGTTCCTACTACCGTTTTTGATAA
1 TAGCGTACATGACATTGATGCTTTGGTGACGCAAAATACGCTTTTCCTACCACTGTTTTTGATAG
* * * *
206912 AATCAAAGTTTGTCTCTTAAATAAGATAAACTAGAATAGTCATACTAATACCTATTCCTTTT-TG
66 AATCAAAGTTTGTCTCTTAAATAAGAGAAACTAGAATAGTCAAACTAATCCCTGTT-CTTTTCTG
* * * * *
206976 GATTAGACTCCGTAAATGTAGTCTTCTCATAAGGATACACGAT-TTGATGCTTTGGTTTTG-AAG
130 GATTAGGCACCATAAACGTAGTCTTCTCATAAGGATACACGATATTCATGCTTTGGTTTTGAAAG
* * * * *
207039 CAAAGGCTTTTTTCCCCCTAATTTTTGTAAAGTCTGACTTCATACCTTAAACAAGACAAACATTG
195 -AAAGGCTTTCTTCCCCC-AATTTTTGTAAAGTCTGACTTCGTGCCTCAAACGAGACAAACATTG
* * * * *
207104 ATTCTAGCAATGGCCTTCATTCATTTTGAAAATCGGCACTATAAACACAATCTTCACATTAGGAT
258 ATTCTAGTAATGGCCTTCATTCATTTTGTAATTAGGCACTATAAACACATTCTTCACATTAGGAT
* *
207169 AAAGGATAATGTTGATTTTCTTTTGCATGAAAATCTTTTCTTTACCTTATTTACCA-TAAAATCA
323 AAAGGATAATGATGATTTTCTTTTGCATGAAAATCTTTTCTTTGCCTTATTTA-CATTAAAATCA
* * * * * *
207233 AAGTTTATCCCTTAAATAAGGCAAGTATCGATTCTAGTAACAGTCTCCATTCTTTCCAAGATT-T
387 AAGTTCATCCCTTAAATAAGGCAAGCATCGATTCTCGTAATAGTCTCCATTCTTTTCAAGATTGG
* ** *
207297 GAACCAAAGGCACATTCCCTTCAT
452 GAAACAAAAACACATTCCTTTCAT
* * * *
207321 TAG-GATACATGACATTGATGCTTTGGTGATGTAAAA-AGAGCTTTTCTTACCACTGTTTTTGAT
1 TAGCG-TACATGACATTGATGCTTTGGTGACGCAAAATA-CGCTTTTCCTACCACTGTTTTTGAT
* *
207384 AGAATCAAAGTTTGTCTCTTAAATAAGAGAAACTAGAATAGTCATACAAATCCCTGTTCTTTTCT
64 AGAATCAAAGTTTGTCTCTTAAATAAGAGAAACTAGAATAGTCAAACTAATCCCTGTTCTTTTCT
* * *
207449 GAATTAGGCACCATAAACTTAGTATTCTCATAAGGATACACGATATTCATGCTTTGGTTTTGAAA
129 GGATTAGGCACCATAAACGTAGTCTTCTCATAAGGATACACGATATTCATGCTTTGGTTTTGAAA
* * * * *
207514 GAAAGTCTTTTTTCCCCCAATTTTTGTAAAGTCTGACATCATGCCTCAAAAGAGACAAACATTGA
194 GAAAGGCTTTCTTCCCCCAATTTTTGTAAAGTCTGACTTCGTGCCTCAAACGAGACAAACATTGA
* * * * * *
207579 TTCTAGTAACGGCCGTCATTCATTTTGTAAGTT-GGCACTTTAATCACATTCTTCAAACTAGGAT
259 TTCTAGTAATGGCCTTCATTCATTTTGTAA-TTAGGCACTATAAACACATTCTTCACATTAGGAT
* * *
207643 AAAGGATAATAATGATTTTCTTTTGCATGAAAATCTTTTCTTTGCCTTGTTTAAATTAAAATCAA
323 AAAGGATAATGATGATTTTCTTTTGCATGAAAATCTTTTCTTTGCCTTATTTACATTAAAATCAA
** * * *
207708 AGTTCATCTGTTAAATCAA-GCAAGCATCGATTCTCGTAACAATCTCTATTCTTTTCAAGATTGG
388 AGTTCATCCCTTAAAT-AAGGCAAGCATCGATTCTCGTAATAGTCTCCATTCTTTTCAAGATTGG
* *
207772 GAAAAAAAAACACATTCTTTTCAT
452 GAAACAAAAACACATTCCTTTCAT
* * * * *
207796 TAGCTTACATGACATTGATGCTTTGGTGACGTAAAATACACTTTTCCTACCACTATTTTTGGTAG
1 TAGCGTACATGACATTGATGCTTTGGTGACGCAAAATACGCTTTTCCTACCACTGTTTTTGATAG
* * * * * *
207861 AGTCAAAGTTTGTTTCTTAAATAAGAGAAGCTAGAATTGTTAAACTAATACCTGTTCTTTT-TAG
66 AATCAAAGTTTGTCTCTTAAATAAGAGAAACTAGAATAGTCAAACTAATCCCTGTTCTTTTCT-G
* * *
207925 GATTAGGCACCATAAACGTAGTCTTCTCATAAGGATACATGATATTCATGCTTTAGTATTGAAAG
130 GATTAGGCACCATAAACGTAGTCTTCTCATAAGGATACACGATATTCATGCTTTGGTTTTGAAAG
*
207990 AATAGG-TTTCTTCCTCCCAATTTTTGTAAAATCTGACTTCGTGCCTCAAACGAGACAAACATTG
195 AA-AGGCTTTCTTCC-CCCAATTTTTGTAAAGTCTGACTTCGTGCCTCAAACGAGACAAACATTG
* *
208054 ATTCTAGTAATGGCCTTTATTCATTTTGTAATTAGGCACTATAAACACATTTTTCACATTAGGAT
258 ATTCTAGTAATGGCCTTCATTCATTTTGTAATTAGGCACTATAAACACATTCTTCACATTAGGAT
* * * * *
208119 AAAGGATAATGATGATTTTCCTTTGCATGGAAATCTTTTCTTTGCGTAATTTACCTTAAAATCAA
323 AAAGGATAATGATGATTTTCTTTTGCATGAAAATCTTTTCTTTGCCTTATTTACATTAAAATCAA
* * * *
208184 AATTTAT-CTTTAAAATAAGGCAAACATCGATTCTCGTAATAGTCTCCATTCTTTTCAAGATTGG
388 AGTTCATCCCTT-AAATAAGGCAAGCATCGATTCTCGTAATAGTCTCCATTCTTTTCAAGATTGG
* * *
208248 GAACCAAAATCACATTCCCTTCAT
452 GAAACAAAAACACATTCCTTTCAT
* * * * * *
208272 TAG-GATACATGACATTGATGCGTTGGTGACGTAAAA-AGAGCTTTTCTTGCCACTGTTATTGAT
1 TAGCG-TACATGACATTGATGCTTTGGTGACGCAAAATA-CGCTTTTCCTACCACTGTTTTTGAT
* * * * * *
208335 AGATTCAATGTTTGTCTCTTAAATAAGTGAAACTAGAATAGCCACACTAAT-CCTTTTCTTTTCT
64 AGAATCAAAGTTTGTCTCTTAAATAAGAGAAACTAGAATAGTCAAACTAATCCCTGTTCTTTTCT
* * * * *
208399 GGATTAGGAACCATAAACGTAGTCTTCTTACAAGAAGACACGATATTCATGCTTTGGTTTTGAAA
129 GGATTAGGCACCATAAACGTAGTCTTCTCATAAGGATACACGATATTCATGCTTTGGTTTTGAAA
* * *
208464 GAAAGGTTTTCTTCCTGCCAATTTTTGTAAAGTCTGACTTTGTGCCTCAAACGAGACAAACATTG
194 GAAAGGCTTTCTTCC-CCCAATTTTTGTAAAGTCTGACTTCGTGCCTCAAACGAGACAAACATTG
* *
208529 ATTCTTGTATTGGCCTTCATTCATTTTGTAATTAGGCACTATAAACACATTCTTCACATTAGGAT
258 ATTCTAGTAATGGCCTTCATTCATTTTGTAATTAGGCACTATAAACACATTCTTCACATTAGGAT
* * * *
208594 AAAGGATAATGATGATTTTCTTTCGCGTAAAAATCTTTTCTTTGCCTTTTTTACATTAAAATCAA
323 AAAGGATAATGATGATTTTCTTTTGCATGAAAATCTTTTCTTTGCCTTATTTACATTAAAATCAA
* * * *
208659 AGTTCATCCCCTAAATAAGGCAAACATCGATTCTCGTAATAGTTTCTATTCTTTTCAAGATTGGG
388 AGTTCATCCCTTAAATAAGGCAAGCATCGATTCTCGTAATAGTCTCCATTCTTTTCAAGATTGGG
*
208724 AAACAAAAACGCATTCCTTTCAT
453 AAACAAAAACACATTCCTTTCAT
* * *
208747 TAGCGTACATGATATTGATGCTTTGGTGACGCAAAATACGTTTTTCCAACCA-TCGTTTTTGATA
1 TAGCGTACATGACATTGATGCTTTGGTGACGCAAAATACGCTTTTCCTACCACT-GTTTTTGATA
* ** * * * * *
208811 GAATGAAAGTGCGCCTCTTAAATAAGATAAACTAGAATAGTCAAACTAGTCCCTATTCTTTTTTG
65 GAATCAAAGTTTGTCTCTTAAATAAGAGAAACTAGAATAGTCAAACTAATCCCTGTTCTTTTCTG
* *
208876 GATTAGGCACCATAAACGTAGCCTTCTCATAAGGATACACGATATTCCTGCTTTGGTTTTGAAAG
130 GATTAGGCACCATAAACGTAGTCTTCTCATAAGGATACACGATATTCATGCTTTGGTTTTGAAAG
** *
208941 AAAGGCTTTCTTCGCCCCAACATTTGTAAAGTCTGACTTCGTGCCTCAAACGTGACAAAC----A
195 AAAGGCTTTCTTC-CCCCAATTTTTGTAAAGTCTGACTTCGTGCCTCAAACGAGACAAACATTGA
*
209002 -T-T-G--A-----TTC-TT-A-----TAATTAGGCACTATAAACACATTCTTCACATTAGGATC
259 TTCTAGTAATGGCCTTCATTCATTTTGTAATTAGGCACTATAAACACATTCTTCACATTAGGATA
* * *
209050 AAGGATAACGGTGATTTTCTTTTGCACGAAAATCTTTT-TTTGCCTTATTTACATTAAAATCAAA
324 AAGGATAATGATGATTTTCTTTTGCATGAAAATCTTTTCTTTGCCTTATTTACATTAAAATCAAA
* * *
209114 GTTCATCCC-TAAATAAGGCAAGCATCGATTCCCATAATAGTCTCTATTCTTTTCAAGATTGGGA
389 GTTCATCCCTTAAATAAGGCAAGCATCGATTCTCGTAATAGTCTCCATTCTTTTCAAGATTGGGA
*
209178 AACAAAAACATATTCCTTTCAT
454 AACAAAAACACATTCCTTTCAT
* * *
209200 TAGCGTACCTGGCATTGATGCTTTGGTGACACAAAATACGCTTTTCCTACCA-TCGTTTTTGATA
1 TAGCGTACATGACATTGATGCTTTGGTGACGCAAAATACGCTTTTCCTACCACT-GTTTTTGATA
* * **
209264 GAATCAAAGTTTGTCTCTTAAATGAGGGAAACTAGAATAGTCAAACTAATCCCTGTTCTTTTCAA
65 GAATCAAAGTTTGTCTCTTAAATAAGAGAAACTAGAATAGTCAAACTAATCCCTGTTCTTTTCTG
* *
209329 GATTAGGCACCATAAACGTAGTATTCTCATAAGGATACACGATATTGATGCTTTGGTTTTGAAAG
130 GATTAGGCACCATAAACGTAGTCTTCTCATAAGGATACACGATATTCATGCTTTGGTTTTGAAAG
* * * *
209394 AAAGGCTTCCTTCCCCCCAATTTTTGTAAAGTCTGTCTTCGTGCCTCAAACAAGACAAAAATTGA
195 AAAGGCTTTCTT-CCCCCAATTTTTGTAAAGTCTGACTTCGTGCCTCAAACGAGACAAACATTGA
** *
209459 TTCTAGTAATGGCCTTCATTCATTTTGTAATTAGGCACTATAAACACATTCTTCATTTTAGAATA
259 TTCTAGTAATGGCCTTCATTCATTTTGTAATTAGGCACTATAAACACATTCTTCACATTAGGATA
** * * *
209524 AAGGATAGCGACGATTTTCTTTTGCATGAAAATATTTTCTTTGCCTTATTTACATTAAAATGAAA
324 AAGGATAATGATGATTTTCTTTTGCATGAAAATCTTTTCTTTGCCTTATTTACATTAAAATCAAA
* * * * * *
209589 GTTCATCCCCTAAATAAGGGATGCATCAATTCTCGTAACAGTCTCCACTCTTTTCAAGATTGGGA
389 GTTCATCCCTTAAATAAGGCAAGCATCGATTCTCGTAATAGTCTCCATTCTTTTCAAGATTGGGA
*** *
209654 AATGGAAACACATTCTTTTCAT
454 AACAAAAACACATTCCTTTCAT
* * * * * **
209676 TAGCATACCT-AGCA-TGATGCTTTGGTGACACAAAATATGCTTTTCCAACCACCATTTTTGATA
1 TAGCGTACATGA-CATTGATGCTTTGGTGACGCAAAATACGCTTTTCCTACCACTGTTTTTGATA
* * * * **
209739 GAATCAAAGTCTATCTCTTAAATGAGAGAAAGTAGAATAGTCAAACTAAT-CCTAGTTCTTTTAG
65 GAATCAAAGTTTGTCTCTTAAATAAGAGAAACTAGAATAGTCAAACTAATCCCT-GTTCTTTTCT
* *
209803 GGATTAGGCACCATAAACGTAGTCTTCTCATAAGGATACACCGATATTCACGCTTTAGTTTTGAA
129 GGATTAGGCACCATAAACGTAGTCTTCTCATAAGGATACA-CGATATTCATGCTTTGGTTTTGAA
* * * *
209868 AGAATGGCTTTCTCCCTCCCAATTTTTTTAAAGTCTTACTTCGTGCCTCAAACGAGACAAACATT
193 AGAAAGGCTTTCTTCC-CCCAATTTTTGTAAAGTCTGACTTCGTGCCTCAAACGAGACAAACATT
* * *
209933 GATTCTAGTAATGGCCTTTATTCATTTTGTAATTAGGCACTATAAACACATTTTTGACATTAGGA
257 GATTCTAGTAATGGCCTTCATTCATTTTGTAATTAGGCACTATAAACACATTCTTCACATTAGGA
* * * *
209998 TAAAGGATAATGATGATTTTCCTTTGCATGGAAATCTTTTCTTTGCCTTATTTACCTTAAAGTCA
322 TAAAGGATAATGATGATTTTCTTTTGCATGAAAATCTTTTCTTTGCCTTATTTACATTAAAATCA
* * * * * *
210063 AAATTTAT-CCTTAAAATAAGGCAAACATCGATTCTCATAACAGTCTCTATTCTTTTCAAGATTG
387 AAGTTCATCCCTT-AAATAAGGCAAGCATCGATTCTCGTAATAGTCTCCATTCTTTTCAAGATTG
* * *
210127 CGAACCAAAAGCACATTTCC-TTCAT
451 GGAAACAAAAACACA-TTCCTTTCAT
**** * * * * * * * *
210152 TAATACACATGGCATTTATGCATTGGTGACGCAAAA-AGAGCTATTCCTGCCACCGTTGTTGATA
1 TAGCGTACATGACATTGATGCTTTGGTGACGCAAAATA-CGCTTTTCCTACCACTGTTTTTGATA
* * * * * * *
210216 GATTCAATGTTTGTCACTTAAATAAGTGAAACTAGAATAGCCACACTAATCCCTGTT-TTTTTTG
65 GAATCAAAGTTTGTCTCTTAAATAAGAGAAACTAGAATAGTCAAACTAATCCCTGTTCTTTTCTG
* * * * * * * *
210280 GATTAGGCGCCATAAATGTAGTCTTCTTACAAGGAGACACGATATTCATACGTTGGTTTTCAAAG
130 GATTAGGCACCATAAACGTAGTCTTCTCATAAGGATACACGATATTCATGCTTTGGTTTTGAAAG
* * * *
210345 AAAGGTTTTCTTCCTACCAATTTTTGTAAAGTTTGACTTTGTGCCTCAAACGAGACAAACATTGA
195 AAAGGCTTTCTTCC-CCCAATTTTTGTAAAGTCTGACTTCGTGCCTCAAACGAGACAAACATTGA
* * * *
210410 TTCTTGTAGTGGCCTTCATTCATTTTGTAATTAGG--C-----ACACGTTC-TCACTTTAGGATA
259 TTCTAGTAATGGCCTTCATTCATTTTGTAATTAGGCACTATAAACACATTCTTCACATTAGGATA
* * ** * * *
210467 AAGGATAACGATTATTTTCTTTCACGTAAAAATCTTTTCTTTGCCTTTTTTACATTAAAATCAAA
324 AAGGATAATGATGATTTTCTTTTGCATGAAAATCTTTTCTTTGCCTTATTTACATTAAAATCAAA
* * * * * *
210532 GTTCATCCCCTAAATAAGGCAAACATCGATTCTCATAATATTCTCCATTCCTTTGAAGATTGGGA
389 GTTCATCCCTTAAATAAGGCAAGCATCGATTCTCGTAATAGTCTCCATTCTTTTCAAGATTGGGA
210597 AACAAAAACACATTCCTTTCAT
454 AACAAAAACACATTCCTTTCAT
* * * * *
210619 TAGCGTACATGAAATTGATGCTTTGGTGACTGCAAAATAGGCTTTTCCAATC-GTCGTTTTTGAT
1 TAGCGTACATGACATTGATGCTTTGGTGAC-GCAAAATACGCTTTTCCTACCACT-GTTTTTGAT
* * * * * *
210683 AGAATGAAAGTGTT-CCTCTTAAATAAGATAAACTAGAATAGTCAAACTAGTCCTTATTCTTTTC
64 AGAATCAAAGT-TTGTCTCTTAAATAAGAGAAACTAGAATAGTCAAACTAATCCCTGTTCTTTTC
* * *
210747 TGGATTAGGCACCATAAATGTAGCCTTCTCATAAGGATACACGATATTCGTGCTTTGGTTTTGAA
128 TGGATTAGGCACCATAAACGTAGTCTTCTCATAAGGATACACGATATTCATGCTTTGGTTTTGAA
* * **
210812 AGAAAGGCTTTCTTCACCCCAATGTTTGTAAAGACTGACTTCGTGCCTCAAACTTGACAAACATT
193 AGAAAGGCTTTCTTC-CCCCAATTTTTGTAAAGTCTGACTTCGTGCCTCAAACGAGACAAACATT
*
210877 GATTC-----A------T-A-T-A----G---TTAGGCGCTATAAACACATTCTTCACATTAGGA
257 GATTCTAGTAATGGCCTTCATTCATTTTGTAATTAGGCACTATAAACACATTCTTCACATTAGGA
* * * * *
210921 TCAAGGATAACGGTGATTTTCTTTTGCATGAAAATCTTTTCTTTACCTTATTTACATTAAACTCA
322 TAAAGGATAATGATGATTTTCTTTTGCATGAAAATCTTTTCTTTGCCTTATTTACATTAAAATCA
* * *
210986 AAGTTCATCCCTTAAATAAGTCAAGCATCGATTCTCGTAACAGTCTCCATTCTTTTCAAGATTTG
387 AAGTTCATCCCTTAAATAAGGCAAGCATCGATTCTCGTAATAGTCTCCATTCTTTTCAAGATTGG
211051 GAAACAAAAACACATTCCTTTCAT
452 GAAACAAAAACACATTCCTTTCAT
* * * * *
211075 TAGCGTACCTGACATTGATGCCTTGGTGACACAAAATATGCTTTTCCTACCACTATTTTTGATAG
1 TAGCGTACATGACATTGATGCTTTGGTGACGCAAAATACGCTTTTCCTACCACTGTTTTTGATAG
* * *
211140 AATCAAAGTTTGTCTCTTAAATAAGAGAAACTAGAATAGTCATACTAATCACTGTTCTTTTCTAG
66 AATCAAAGTTTGTCTCTTAAATAAGAGAAACTAGAATAGTCAAACTAATCCCTGTTCTTTTCTGG
* *
211205 ATTAGGCACCATAAACGTCGTCTTCTCATATGGATACACGATATTCATGCTTTGGTTTTGAAAGA
131 ATTAGGCACCATAAACGTAGTCTTCTCATAAGGATACACGATATTCATGCTTTGGTTTTGAAAGA
* * * **
211270 AAGGCTTTCTTCCCCCTAATTTTTGCAAACTTTGACTTCGTGCCTCAAATAAGACAAACATTGAT
196 AAGGCTTTCTTCCCCC-AATTTTTGTAAAGTCTGACTTCGTGCCTCAAACGAGACAAACATTGAT
*
211335 TCTAGTAATGGCCTTCATTCATTTTGTAATTAGGCACTATAAACACATTCTTGACATTAGGATAA
260 TCTAGTAATGGCCTTCATTCATTTTGTAATTAGGCACTATAAACACATTCTTCACATTAGGATAA
* * * * **
211400 AGTATAATGTTGATTTTCTTTTGCGTGAAAATATTTTCTTTGCCACATTTACATTAAAATCAAAG
325 AGGATAATGATGATTTTCTTTTGCATGAAAATCTTTTCTTTGCCTTATTTACATTAAAATCAAAG
* * * * *
211465 TTCATCCCCTAAATAAGGTAAGCATCGATTC-CTGTAACAGTCTCTATTCTTTTCAAGATTGTGA
390 TTCATCCCTTAAATAAGGCAAGCATCGATTCTC-GTAATAGTCTCCATTCTTTTCAAGATTGGGA
* *
211529 AACAAAAACATATTCCTTTCGT
454 AACAAAAACACATTCCTTTCAT
* * **
211551 TAGCGTACCTCG-CATTGATGCTCTT-GTGACGCAAATTACGCTTTTCCTACCACCCTTTTTGAT
1 TAGCGTACAT-GACATTGATGCT-TTGGTGACGCAAAATACGCTTTTCCTACCACTGTTTTTGAT
* * *
211614 AGAATCAAAGTTTGTCTCTTAAATGAGGGAAACTAGAATAGTCAAACTAATCCCTGTTCTTTTCA
64 AGAATCAAAGTTTGTCTCTTAAATAAGAGAAACTAGAATAGTCAAACTAATCCCTGTTCTTTTCT
* * * * * *
211679 AGATTAGGCACCATAAATGTAGTATTCTCATAAGGATACCCGCTATTGATGCTTTGGTTTTGAAA
129 GGATTAGGCACCATAAACGTAGTCTTCTCATAAGGATACACGATATTCATGCTTTGGTTTTGAAA
* * * * * *
211744 GAAAGGCTTCCTTCCCCCCAATTTTTGTAAAGTTTGTCTTTGTGCCTCAAACGAGAGAAAAATTG
194 GAAAGGCTTTCTT-CCCCCAATTTTTGTAAAGTCTGACTTCGTGCCTCAAACGAGACAAACATTG
*** * *
211809 ATTCTAGTAATTTTCTTCTTTCATTTTGTAATTCGGCACTATAAACACATTCTTCACATTAGGAT
258 ATTCTAGTAATGGCCTTCATTCATTTTGTAATTAGGCACTATAAACACATTCTTCACATTAGGAT
* * * * *
211874 AAAGGATAATGTTGATTTTCTTTTGCGTGGAAATCTTTTCTTTGCCTTATTTACCTTAAAATAAA
323 AAAGGATAATGATGATTTTCTTTTGCATGAAAATCTTTTCTTTGCCTTATTTACATTAAAATCAA
* * * * ** *
211939 AGTTTATCCCTTAAATAGGGCAAGGATTGATTCTAATAACAGTCTCCATTCTTTTCAAGATTGGG
388 AGTTCATCCCTTAAATAAGGCAAGCATCGATTCTCGTAATAGTCTCCATTCTTTTCAAGATTGGG
*
212004 AAACAATAACACATTCCTTTCAT
453 AAACAAAAACACATTCCTTTCAT
** ** * * * ** *
212027 TAG-GATACCGGATGTTGATGCTTTGGTGATGCAAAATATGCTTTTCCTACCTCCATTTTCGATA
1 TAGCG-TACATGACATTGATGCTTTGGTGACGCAAAATACGCTTTTCCTACCACTGTTTTTGATA
* * *
212091 GAATCAAAGTTTGTCTCTTAAATAAGATAAACTAGAATAGTCATACTAATCCCTATTCTTTTCTG
65 GAATCAAAGTTTGTCTCTTAAATAAGAGAAACTAGAATAGTCAAACTAATCCCTGTTCTTTTCTG
* * * * *
212156 GATTAGG-ATCTATAAACATAGTCTTCT-TTCAAGGATACACAATATTCATGCTTTGGTTTCGAA
130 GATTAGGCA-CCATAAACGTAGTCTTCTCAT-AAGGATACACGATATTCATGCTTTGGTTTTGAA
* ** * **
212219 AGAAAGGTTTTCTTTCTGCCAATTTTTGTAAAGTTTGACTTTATGCCTCAAACGAGACAAACATT
193 AGAAAGGCTTTC-TTCCCCCAATTTTTGTAAAGTCTGACTTCGTGCCTCAAACGAGACAAACATT
* * *
212284 GATTCTATTATTGGCCTTCATTCATTTTGTAAATAGGCACTATAAAACACATTCTTCACATTAGG
257 GATTCTAGTAATGGCCTTCATTCATTTTGTAATTAGGCACTAT-AAACACATTCTTCACATTAGG
* * * *
212349 ATAAATGATAATAATGATTTTCTTTTGGATGAAAATCTTTTCTTTGCCTTATTTACAATAAAATC
321 ATAAAGGATAATGATGATTTTCTTTTGCATGAAAATCTTTTCTTTGCCTTATTTACATTAAAATC
* * * * * *
212414 GAACTTCATCCCCTAAATAAGGCAAGCATTGATACTCGTAATAGTCTCCATTCTTTTCAAGATCG
386 AAAGTTCATCCCTTAAATAAGGCAAGCATCGATTCTCGTAATAGTCTCCATTCTTTTCAAGATTG
*
212479 GGAAATAAAAACACATTCCTTTCAT
451 GGAAACAAAAACACATTCCTTTCAT
* * * *
212504 TAGCGTACATGACATTGATGCTTTGGTGATGCAAAATATGCTTTTCCTACCA-TCATTTTTAATA
1 TAGCGTACATGACATTGATGCTTTGGTGACGCAAAATACGCTTTTCCTACCACT-GTTTTTGATA
* * * *
212568 GAATCAAAGTGTGTCTCTTAAATAAGATAAACTAGAATAGTCATACTAATCCCTATTCTTTTCTG
65 GAATCAAAGTTTGTCTCTTAAATAAGAGAAACTAGAATAGTCAAACTAATCCCTGTTCTTTTCTG
* * * * * *
212633 GATTAGGCACCAAAAACATAGTCTTCCCCTAAAGATACAC-AGTATTGATGCTTTGGTTTTGAAA
130 GATTAGGCACCATAAACGTAGTCTTCTCATAAGGATACACGA-TATTCATGCTTTGGTTTTG-AA
* * * * * *
212697 AAAAAGGCTTTTTTCCCCCCAATTTTTGTAAAGTCTGACATCATGCCTCGAACGAGACAAATATT
193 AGAAAGGCTTTCTT-CCCCCAATTTTTGTAAAGTCTGACTTCGTGCCTCAAACGAGACAAACATT
* *
212762 GATTCTAGAAATGGCCTTCATTCATTTTGTAATTAGGCACCATAAACACATTCTTCACATTAGGA
257 GATTCTAGTAATGGCCTTCATTCATTTTGTAATTAGGCACTATAAACACATTCTTCACATTAGGA
* * *
212827 TAAAGGATAATAATGATTTTCTTTTGCAT-AGAAATCTTTTCTTTGCCTTATTTACCTTAAATTC
322 TAAAGGATAATGATGATTTTCTTTTGCATGA-AAATCTTTTCTTTGCCTTATTTACATTAAAATC
* * ** * *
212891 AAAGTTTATCCCTTAAATAAGGCAAACATCGATTCTCAAAACAATCTCCATTCTTTTC-AGATTG
386 AAAGTTCATCCCTTAAATAAGGCAAGCATCGATTCTCGTAATAGTCTCCATTCTTTTCAAGATTG
*
212955 GGAAACAAAAACACATTCCTTTCAC
451 GGAAACAAAAACACATTCCTTTCAT
* * * * *
212980 TAGCGCACATGACATTGATGCTTTGGTGATGCAAAATATGCTTTTCCAACCA-TCATTTTTGATA
1 TAGCGTACATGACATTGATGCTTTGGTGACGCAAAATACGCTTTTCCTACCACT-GTTTTTGATA
* * * * * * * * * *
213044 TAATCAAAGTGTGCCTCTTATATAAGATAAACTAGAATAGTCAAAATAGTCCCTATTATTTTCTA
65 GAATCAAAGTTTGTCTCTTAAATAAGAGAAACTAGAATAGTCAAACTAATCCCTGTTCTTTTCTG
* * * *
213109 GATTAGGCACCATAAACGTACTCTTCTCATAAGGATACATGAGATTCATGCTTCGGTTTTGAAAG
130 GATTAGGCACCATAAACGTAGTCTTCTCATAAGGATACACGATATTCATGCTTTGGTTTTGAAAG
*
213174 AAAGGCTTTCTTCGCCCCAATATTTGTAAAGTCTGACTTCGTGCCTCAAACGAGACAAAC----A
195 AAAGGCTTTCTTC-CCCCAATTTTTGTAAAGTCTGACTTCGTGCCTCAAACGAGACAAACATTGA
*
213235 --C-AG--A-----TTC-TT-A-----TAATTAGGCACTATAAACACATTCTTCACATTAGGAAA
259 TTCTAGTAATGGCCTTCATTCATTTTGTAATTAGGCACTATAAACACATTCTTCACATTAGGATA
* * * *
213283 AAGGATAATGATGATTTTCTTTTACATGAAAATTTTTTCTTTACCTTACTTACATTAAAATCAAA
324 AAGGATAATGATGATTTTCTTTTGCATGAAAATCTTTTCTTTGCCTTATTTACATTAAAATCAAA
* *
213348 GTTCATCCCTTAAATAAGGCAAGCATCGATTCTCGTAACAGTCTCCATTCTTTTCAAGATTTGGA
389 GTTCATCCCTTAAATAAGGCAAGCATCGATTCTCGTAATAGTCTCCATTCTTTTCAAGATTGGGA
213413 AACAAAAACACATTCCTTTCAT
454 AACAAAAACACATTCCTTTCAT
* * * * *
213435 TAGCGTACCTGGCATTGATGCTTTGGTGATGCAAAATACACTTTTCCTACCACCGTTTTTGATAG
1 TAGCGTACATGACATTGATGCTTTGGTGACGCAAAATACGCTTTTCCTACCACTGTTTTTGATAG
* * * * ***
213500 AATCAAAGTTTGTCTCTTAAATGAGAGAAACTAGAATAGTCAAACTAATCTCTATTTTTTTAAAG
66 AATCAAAGTTTGTCTCTTAAATAAGAGAAACTAGAATAGTCAAACTAATCCCTGTTCTTTTCTGG
* * *
213565 ATTAGGCACTATAAACGTAGTATTCTCATAAGGATACACGATATTTATGCTTTGGTTTTGAAAGA
131 ATTAGGCACCATAAACGTAGTCTTCTCATAAGGATACACGATATTCATGCTTTGGTTTTGAAAGA
* * * * * *
213630 AAGGCTTTCTTCCCCCAATTTTTCTAAAGTCTGTCATCATGCCTCAAATGAGACAAACATTGGTT
196 AAGGCTTTCTTCCCCCAATTTTTGTAAAGTCTGACTTCGTGCCTCAAACGAGACAAACATTGATT
* * *
213695 CTAGTAATGGCCTTCATTCTTTTTGTAATTAGGCACTATGAACAGATTCTTCACATTAGGATAAA
261 CTAGTAATGGCCTTCATTCATTTTGTAATTAGGCACTATAAACACATTCTTCACATTAGGATAAA
* * *
213760 GGATAATGATGATTTTCTTTTGCATGAAAACCTTTTCTTTGCCTTATTTGCATTAAAATCAATGT
326 GGATAATGATGATTTTCTTTTGCATGAAAATCTTTTCTTTGCCTTATTTACATTAAAATCAAAGT
* * * * *
213825 TCATCCCCTAAATAAGGCAAGCATCGATTCTCGTAATAATCTGCATTATTTTCAAGATTGGAAAA
391 TCATCCCTTAAATAAGGCAAGCATCGATTCTCGTAATAGTCTCCATTCTTTTCAAGATTGGGAAA
*
213890 CAAAAACATATTCCTTTCAT
456 CAAAAACACATTCCTTTCAT
* * * *
213910 TAGCGTACATGACATTGATGCTTTGGTGAAGCAGAATATGCTTTTCCTACCACTGATTTTGATAG
1 TAGCGTACATGACATTGATGCTTTGGTGACGCAAAATACGCTTTTCCTACCACTGTTTTTGATAG
* * * *
213975 AATCAAAGTTTGTCTCTTAAATACGATAAACTAGAATAGTCATACTAATCCCTATTCTTTTCTGG
66 AATCAAAGTTTGTCTCTTAAATAAGAGAAACTAGAATAGTCAAACTAATCCCTGTTCTTTTCTGG
* *
214040 ATTAGGCACCATAAACGTAGTCTTCTCATAAGGATACACGATATTCACGCTTTAGTTTTGAAAGA
131 ATTAGGCACCATAAACGTAGTCTTCTCATAAGGATACACGATATTCATGCTTTGGTTTTGAAAGA
* * * *
214105 ATGGCTTTCGTCCTCCCAATTTTTGTAAAGTCTGACTTCGTGCCTCAAACGAGACAAATAATGAT
196 AAGGCTTTCTTCC-CCCAATTTTTGTAAAGTCTGACTTCGTGCCTCAAACGAGACAAACATTGAT
* * *
214170 TCTAGTAATGGCATTTATTCATTTTGTAATTAGGCACTATAAACACATTTTTCACATTAGGATAA
260 TCTAGTAATGGCCTTCATTCATTTTGTAATTAGGCACTATAAACACATTCTTCACATTAGGATAA
* *
214235 AGGATAATGATGATTTTGC-TTTGCATGGAAATCTTTTCTTTGCCTTATTTACCTTAAAATCAAA
325 AGGATAATGATGATTTT-CTTTTGCATGAAAATCTTTTCTTTGCCTTATTTACATTAAAATCAAA
* * * * *
214299 ATTTAT-CCTTAAAATAATGCAAGCATCTATTCTCGTAACAGT-TGCCATTCTTTTCAAGATTGG
389 GTTCATCCCTT-AAATAAGGCAAGCATCGATTCTCGTAATAGTCT-CCATTCTTTTCAAGATTGG
214362 GAAACAAAAACACATTCCTTTCAT
452 GAAACAAAAACACATTCCTTTCAT
* * * * * * *
214386 TACCGTACCTGACGTTGATGCTTTGGTGATGCAAAATATGCTTTTCCTCCCACTATTTTTGATAG
1 TAGCGTACATGACATTGATGCTTTGGTGACGCAAAATACGCTTTTCCTACCACTGTTTTTGATAG
* * *
214451 AATCAAAGTTTGTCTCTTAAATAAGAGAAACTAGAATAGTCATACTAATCACTGTTCTTTTCTAG
66 AATCAAAGTTTGTCTCTTAAATAAGAGAAACTAGAATAGTCAAACTAATCCCTGTTCTTTTCTGG
* *
214516 ATTAGGCACCATAAACGTAGTCTTCTCATATGGATACACGATATTCAAGCTTTGGTTTTGAAAGA
131 ATTAGGCACCATAAACGTAGTCTTCTCATAAGGATACACGATATTCATGCTTTGGTTTTGAAAGA
* * * * **
214581 AAGGCTTTCTTCCCCCCAATTTTTGCAAACTCTGACTTCATGCCCCAAATAAGACAAACATTGAT
196 AAGGCTTTCTT-CCCCCAATTTTTGTAAAGTCTGACTTCGTGCCTCAAACGAGACAAACATTGAT
* * *
214646 TCTAGTAATGGCCTTCATTCATTTTGTAATTAGGCACTGTAAATACATTCTTGACATTAGGATAA
260 TCTAGTAATGGCCTTCATTCATTTTGTAATTAGGCACTATAAACACATTCTTCACATTAGGATAA
* *
214711 AGGATAATGATGATTTTCTTTTGCGTGAAAATCTTTTCTTTGCCTCATTTACATTAAAATCAAA-
325 AGGATAATGATGATTTTCTTTTGCATGAAAATCTTTTCTTTGCCTTATTTACATTAAAATCAAAG
* * * * * *
214775 -ACATATCCTTAAAATAAGGCAAACATTGATTCTCGTAACAGTCTCCGTTCTTTTCAAGATTGGG
390 TTCAT-CCCTT-AAATAAGGCAAGCATCGATTCTCGTAATAGTCTCCATTCTTTTCAAGATTGGG
214839 AAACAAAAACACATTCCTTTCAT
453 AAACAAAAACACATTCCTTTCAT
* *
214862 TAGCGTACCTGACATTGATGCTTTGGTGACACAAAATACGCTTTTCCTACCA-TCGTTTTTGATA
1 TAGCGTACATGACATTGATGCTTTGGTGACGCAAAATACGCTTTTCCTACCACT-GTTTTTGATA
* *
214926 GAATCAAAGTTTCTCTCTTAAATAAGAGAAACTAGAATAGTCAAACTAATCCCTATTCTTTT-TA
65 GAATCAAAGTTTGTCTCTTAAATAAGAGAAACTAGAATAGTCAAACTAATCCCTGTTCTTTTCT-
* * *
214990 GGATTAGGCACCGTAAACGGAGTCTTCTCATAAAGATACACGATATTCATGCTTTGGTTTTGAAA
129 GGATTAGGCACCATAAACGTAGTCTTCTCATAAGGATACACGATATTCATGCTTTGGTTTTGAAA
* * *
215055 GAAAGGCTTTCTTCCCTCCAATTTTTATAAAGTTTGACATCGTGCCTCAAACGAGAC-AACATTG
194 GAAAGGCTTTCTTCCC-CCAATTTTTGTAAAGTCTGACTTCGTGCCTCAAACGAGACAAACATTG
* * * * * ** *
215119 ATTCCCA-TAATGGCTTTCGTTTATTTTGTAATTAGGCGCTATAAACATTTTCTTGACATTAGGA
258 ATT-CTAGTAATGGCCTTCATTCATTTTGTAATTAGGCACTATAAACACATTCTTCACATTAGGA
* *
215183 TAAAGGATACTGATGATTTTCTTTTGCATGAAAATCTTTTCTTTGCCTCATTTACATTAAAATCA
322 TAAAGGATAATGATGATTTTCTTTTGCATGAAAATCTTTTCTTTGCCTTATTTACATTAAAATCA
* * * ** * * * *
215248 AAATTTAT-CCTTAAAAGAAGGCAAAAATTGATTCTCGTAATAGTCTCCGTTCTTTTCAGGATTA
387 AAGTTCATCCCTT-AAATAAGGCAAGCATCGATTCTCGTAATAGTCTCCATTCTTTTCAAGATTG
* * *
215312 GGAGACAAAAACACCTTCCCTTCAT
451 GGAAACAAAAACACATTCCTTTCAT
* * * * * * *
215337 TAG-GATACAAGATATTGATGCTATGGTGATGCAAAAAAAGCTTTTCTTA-CA-TCGTTTTTGAT
1 TAGCG-TACATGACATTGATGCTTTGGTGACGCAAAATACGCTTTTCCTACCACT-GTTTTTGAT
* * * * * ** **
215399 AGAATTAACGTTTGTCTCTTAAATAACACAAAC-ATGAAGAGTCATTCTAATCCCTAATCTTTTC
64 AGAATCAAAGTTTGTCTCTTAAATAAGAGAAACTA-GAATAGTCAAACTAATCCCTGTTCTTTTC
** * ** * *
215463 AAGTTTAGGCACCATAAACAAAGTCTTCTCATACA-GATACACGATATTGATGCTTTGGTTTTGC
128 TGGATTAGGCACCATAAACGTAGTCTTCTCATA-AGGATACACGATATTCATGCTTTGGTTTTGA
* * * * ** *
215527 AAGAAAAGCTTTTTTCCCACCAATTTTTTGTAAAGTCTAACTTTCGTGCCCCAATTGAGACAAAT
192 AAGAAAGGCTTTCTTCCC-CCAA-TTTTTGTAAAGTCTGAC-TTCGTGCCTCAAACGAGACAAAC
* * * *
215592 ATGGATTCTCGTAATGGCTTTCATTCATTTTGTAATTAGGCACTATAAACACAATCTTCAC----
254 ATTGATTCTAGTAATGGCCTTCATTCATTTTGTAATTAGGCACTATAAACACATTCTTCACATTA
* * *
215653 --AT--A--AT--T-ATGATTTCCTTTTGCTTGAAAATCTTTTCTTTGCCTTATTTACCTTAAAA
319 GGATAAAGGATAATGATGATTTTCTTTTGCATGAAAATCTTTTCTTTGCCTTATTTACATTAAAA
* * * *
215709 TCAAAG-ACTATCCTTTAAATAAGGCAAGCATCGATTATCGTAATAGTCTCCACTCTTTTCAAGA
384 TCAAAGTTC-ATCCCTTAAATAAGGCAAGCATCGATTCTCGTAATAGTCTCCATTCTTTTCAAGA
* *
215773 TTAGGAAACAAAAACACCTTCCTTT
448 TTGGGAAACAAAAACACATTCCTTT
215798 TTGTTAGGAT
Statistics
Matches: 12150, Mismatches: 1578, Indels: 652
0.84 0.11 0.05
Matches are distributed among these distances:
432 2 0.00
433 9 0.00
435 2 0.00
438 3 0.00
439 1 0.00
441 3 0.00
442 3 0.00
445 3 0.00
446 4 0.00
448 7 0.00
449 4 0.00
450 1 0.00
451 461 0.04
452 265 0.02
453 530 0.04
454 535 0.04
455 652 0.05
456 178 0.01
457 3 0.00
458 3 0.00
459 2 0.00
460 6 0.00
461 14 0.00
462 8 0.00
463 1 0.00
464 193 0.02
465 320 0.03
466 1224 0.10
467 176 0.01
468 83 0.01
469 130 0.01
470 3 0.00
471 371 0.03
472 29 0.00
473 41 0.00
474 649 0.05
475 1889 0.16
476 3487 0.29
477 756 0.06
478 99 0.01
ACGTcount: A:0.32, C:0.19, G:0.14, T:0.35
Consensus pattern (475 bp):
TAGCGTACATGACATTGATGCTTTGGTGACGCAAAATACGCTTTTCCTACCACTGTTTTTGATAG
AATCAAAGTTTGTCTCTTAAATAAGAGAAACTAGAATAGTCAAACTAATCCCTGTTCTTTTCTGG
ATTAGGCACCATAAACGTAGTCTTCTCATAAGGATACACGATATTCATGCTTTGGTTTTGAAAGA
AAGGCTTTCTTCCCCCAATTTTTGTAAAGTCTGACTTCGTGCCTCAAACGAGACAAACATTGATT
CTAGTAATGGCCTTCATTCATTTTGTAATTAGGCACTATAAACACATTCTTCACATTAGGATAAA
GGATAATGATGATTTTCTTTTGCATGAAAATCTTTTCTTTGCCTTATTTACATTAAAATCAAAGT
TCATCCCTTAAATAAGGCAAGCATCGATTCTCGTAATAGTCTCCATTCTTTTCAAGATTGGGAAA
CAAAAACACATTCCTTTCAT
Found at i:216199 original size:13 final size:13
Alignment explanation
Indices: 216181--216206 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
216171 TACAGCAAGT
216181 ATGTATCGATACA
1 ATGTATCGATACA
216194 ATGTATCGATACA
1 ATGTATCGATACA
216207 CAAAAAATTG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:218465 original size:21 final size:21
Alignment explanation
Indices: 218432--218476 Score: 56
Period size: 21 Copynumber: 2.1 Consensus size: 21
218422 TTGCAAGTTG
*
218432 AAATAAAGAAGTTGGCTAATGA
1 AAATAAAGAAGTTAGCTAA-GA
*
218454 AAATAATG-AGTTAGCTAAGA
1 AAATAAAGAAGTTAGCTAAGA
218474 AAA
1 AAA
218477 ATGAAAACTT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
20 5 0.24
21 9 0.43
22 7 0.33
ACGTcount: A:0.53, C:0.04, G:0.20, T:0.22
Consensus pattern (21 bp):
AAATAAAGAAGTTAGCTAAGA
Found at i:220300 original size:15 final size:15
Alignment explanation
Indices: 220280--220310 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
220270 TAAAAATGTC
*
220280 CAAAATGAGGAAGCT
1 CAAAATGAAGAAGCT
220295 CAAAATGAAGAAGCT
1 CAAAATGAAGAAGCT
220310 C
1 C
220311 CAAACGAAAT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.48, C:0.16, G:0.23, T:0.13
Consensus pattern (15 bp):
CAAAATGAAGAAGCT
Found at i:222409 original size:13 final size:13
Alignment explanation
Indices: 222391--222427 Score: 65
Period size: 13 Copynumber: 2.8 Consensus size: 13
222381 ATTTTTCTTG
*
222391 GTATCGATACATT
1 GTATCGATACAAT
222404 GTATCGATACAAT
1 GTATCGATACAAT
222417 GTATCGATACA
1 GTATCGATACA
222428 GGGTGATTAT
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
13 23 1.00
ACGTcount: A:0.35, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
GTATCGATACAAT
Done.