Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold2224
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 651981
ACGTcount: A:0.32, C:0.18, G:0.16, T:0.33
File 2 of 3
Found at i:222591 original size:20 final size:20
Alignment explanation
Indices: 222548--222594 Score: 60
Period size: 21 Copynumber: 2.3 Consensus size: 20
222538 AAATCTTTTG
222548 CAAAATACTTGTTTTTCACTT
1 CAAAATACTTGTTTTTCAC-T
*
222569 CAAATTACTTCGTTTTTCA-T
1 CAAAATACTT-GTTTTTCACT
222589 CAAAAT
1 CAAAAT
222595 CAGCATCAAA
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
20 6 0.26
21 9 0.39
22 8 0.35
ACGTcount: A:0.32, C:0.19, G:0.04, T:0.45
Consensus pattern (20 bp):
CAAAATACTTGTTTTTCACT
Found at i:224993 original size:13 final size:13
Alignment explanation
Indices: 224975--225000 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
224965 TACAGCAAGT
224975 ATGTATCGATACA
1 ATGTATCGATACA
224988 ATGTATCGATACA
1 ATGTATCGATACA
225001 CAAAAAATTG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:229276 original size:477 final size:477
Alignment explanation
Indices: 227493--241229 Score: 17124
Period size: 476 Copynumber: 28.9 Consensus size: 477
227483 ATTAGGCACT
* ** * * *
227493 ATAAACGATAATGACCATTTTCTTTTCCATGAAAATCTTTTCTTT-CTCTTATTTACATTAAAAT
1 ATAAAGGATAATGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGC-CTTATTTACCTTAAAAT
* * * * *
227557 CAAAGTTCATCCCTTAAATAAGGCAGGTATCGATTCTCCTAATAATCTCCATTCTTTTCAAGATT
65 CAAAGTTTATCCCTTAAATAAGGCAAGCATCGATTCTCGTAATAGTCTCCATTCTTTTCAAGATT
* *
227622 AGGAAACAAAAACACATTCCTTTCATTAGCGTACATGACATTGATGCTTTGGTGACGCAAAA-AG
130 GGGAAACAAAAACACATTCCTTTCATTAGCGTACATGACATTGATGCTTTGGTGACGCAAAATAC
* * * * * * *
227686 AGCTTTTCTTACAATCGTTTTTTATAGAATCACAGTTTGTCTCTCAAATTAGAGAAACTAGAATA
195 AGCTTTTCCTACCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGAGAAACTAGAATA
* **
227751 GTCAAACTAATCTCC-GTTCTTTTTAGGATTAGGCACCATAAACACAGTCTTCTCATAAGGATAC
260 GTCAAACTAATC-CCTGTTCTTTTCAGGATTAGGCACCATAAACGTAGTCTTCTCATAAGGATAC
* * * *
227815 AAGATATTGATGCC-TTGGTTTTGAAAGAAAGGCTTTCTTCCACCT-AATTTTTGTAGAGTCAGA
324 ACGATATTGAT-CCTTTGGTTTTGAAAGAAAGGCTTTCTTCC-CCTCAATTTTTATAAAGTCTGA
* * * *
227878 CATCATGCCTCAAATGAGATAAACATTGATTCCAGTAATGGCCTTCATTCATTTTGTAATTAGGC
387 CATCGTGCCTCAAACGAGACAAACATTGATTCTAGTAATGGCCTTCATTCATTTTGTAATTAGGC
* * *
227943 ACCATAAACACATTCTTCTCATTTGG
452 ACTATAAACACATTCTTCACATTAGG
* * * *
227969 AAAAAGGATAATGATGATTTTATTTTGCATGAAAATCTTTTCTTTGCCTTATTTACCTTGAAATC
1 ATAAAGGATAATGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCTTATTTACCTTAAAATC
* * ** *
228034 AAAGTTTATCCCTTAATTAAGGCAAGAATCGATTCTTATAATAGTCTCCACTCTTTTCAAGATTG
66 AAAGTTTATCCCTTAAATAAGGCAAGCATCGATTCTCGTAATAGTCTCCATTCTTTTCAAGATTG
* * * * *
228099 GAAAACAAAAACTCTTTACCTTT-ATTAGCGTACATGACATTGATACTTTGGGGACGCAAAATAC
131 GGAAACAAAAACACATT-CCTTTCATTAGCGTACATGACATTGATGCTTTGGTGACGCAAAATAC
* * * * *
228163 -GCTTTTCCTACTACAGTTTTTGATAGAATCAAAGTTTGTTTCTTAAATAAGATAAATTAGAATA
195 AGCTTTTCCTACCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGAGAAACTAGAATA
228227 GTCAAACTAATCCCTGTTCTGTTT-AGGATTAGGCACCATAAACGTAGTCTTCTCATAAGGATAC
260 GTCAAACTAATCCCTGTTCT-TTTCAGGATTAGGCACCATAAACGTAGTCTTCTCATAAGGATAC
* * *
228291 ACGATATTGATCCTTTGGTTTGGAAAGAAAGGCTTTCTTCCTCC-CAATTTTTGTAAAGTTTGAC
324 ACGATATTGATCCTTTGGTTTTGAAAGAAAGGCTTTCTTCC-CCTCAATTTTTATAAAGTCTGAC
* * * *
228355 ATCATGCCCCAAACGAGACAACCATTGATTCCA-TAAATGGCCTTCATTCATTTTGTAATTAGGC
388 ATCGTGCCTCAAACGAGACAAACATTGATTCTAGT-AATGGCCTTCATTCATTTTGTAATTAGGC
* *
228419 ACTATAAACACATTGTTCACATT-GCA
452 ACTATAAACACATTCTTCACATTAG-G
*
228445 ATAAAGGATAATGATGATTTTCTTTTGCATGGAAATCGTTTCTTTGCCTTATTTACCTTAAAATG
1 ATAAAGGATAATGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCTTATTTACCTTAAAA--
* * * * * *
228510 CCTCAAAGTTTATCCCTGAAATAAGGTAAGCATCGATTCTCATAATAGTCCCCAATCTTTTTAAG
64 --TCAAAGTTTATCCCTTAAATAAGGCAAGCATCGATTCTCGTAATAGTCTCCATTCTTTTCAAG
* * * *
228575 ATTGGGAAACAAAAACATATTCCTTTCATTAGCATACCTAACATTGATGCTTTGGTGACGCAAAA
127 ATTGGGAAACAAAAACACATTCCTTTCATTAGCGTACATGACATTGATGCTTTGGTGACGCAAAA
* * * * * * *
228640 TAC-GTTTTTCCTACCATCATTTTTGATAGAATCAAAGCTTGTGTCTTAAATAAGATAAATTAGA
192 TACAGCTTTTCCTACCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGAGAAACTAGA
* *
228704 ATAGTCAAACTAATCCTTATTCTATTT-AGGATTAGGCACCATAAACGTAGTCTTCTCATAAGGA
257 ATAGTCAAACTAATCCCTGTTCT-TTTCAGGATTAGGCACCATAAACGTAGTCTTCTCATAAGGA
* *
228768 TACACAATATTGATCCTTTGGTTTTG-AAGCAAAGGCTTTCTTCCCCTCAATTTTTATCAAGTCT
321 TACACGATATTGATCCTTTGGTTTTGAAAG-AAAGGCTTTCTTCCCCTCAATTTTTATAAAGTCT
* * * * * * * * *
228832 AACATCATGCCTCAAATGAGACAAACATTGATTCTGGAAACGACCTTCATTAAATTTGTAATTAG
385 GACATCGTGCCTCAAACGAGACAAACATTGATTCTAGTAATGGCCTTCATTCATTTTGTAATTAG
228897 GCACTATAAACACATTCTTCACATTAGG
450 GCACTATAAACACATTCTTCACATTAGG
* * * *
228925 ATAAAGGATAATGATGGTTTTCTTTTGCATGGAAATCTTTTCTATGCCTTATTTACTTTAAAGTC
1 ATAAAGGATAATGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCTTATTTACCTTAAAATC
* *** *
228990 AAAGCTTATCCCTTAAATAAAATAAGCATCGATTCTCATAATAGTCTCCATTCTTTTCAAGATTG
66 AAAGTTTATCCCTTAAATAAGGCAAGCATCGATTCTCGTAATAGTCTCCATTCTTTTCAAGATTG
* * * *
229055 GGAAACAAAAACACATTCTTTTCGTTAGCGTACCTGACATTAATGCTTTGGTGACGCAAAATACA
131 GGAAACAAAAACACATTCCTTTCATTAGCGTACATGACATTGATGCTTTGGTGACGCAAAATACA
* * * * *
229120 GTTTTTCCTACCATCATTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGATAAATTAGAATAG
196 GCTTTTCCTACCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGAGAAACTAGAATAG
* *
229185 TCAAACTAATCCCTATTCTGTTCAGGATTAGGCACCATAAACGTAGTCTTCTCATAAGGATACAC
261 TCAAACTAATCCCTGTTCTTTTCAGGATTAGGCACCATAAACGTAGTCTTCTCATAAGGATACAC
* *
229250 GATATTGATCCTTTGGTTTTG-AAGCAAAGGCTTTCTTCCCCTCAATTTTTATCAAGTCTAACAT
326 GATATTGATCCTTTGGTTTTGAAAG-AAAGGCTTTCTTCCCCTCAATTTTTATAAAGTCTGACAT
* * * * * * *
229314 CATGCCTCAAATGAGACAAACATTGATTCTGGAAACGGCCTTCATTAAATTTGTAATTAGGCACT
390 CGTGCCTCAAACGAGACAAACATTGATTCTAGTAATGGCCTTCATTCATTTTGTAATTAGGCACT
229379 ATAAACACATTCTTCACATTAGG
455 ATAAACACATTCTTCACATTAGG
* * * * *
229402 ATAAGGGATAATGAAGGTTTTCTTTTGCATGGAAATCTTTTCTATGCCTTATTTACTTTAAAATC
1 ATAAAGGATAATGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCTTATTTACCTTAAAATC
* * ** *
229467 AAAGCTTATCCCTTTAATAAGATAAGCATCGATTCTCATAATAGTCTCCATTCTTTTCAAGATTG
66 AAAGTTTATCCCTTAAATAAGGCAAGCATCGATTCTCGTAATAGTCTCCATTCTTTTCAAGATTG
* * * * *
229532 GGAAACAAAAACACATTCTTTTCGTTAGCGTACCTGACATTAATGCTTTGGTGACGTAAAATAC-
131 GGAAACAAAAACACATTCCTTTCATTAGCGTACATGACATTGATGCTTTGGTGACGCAAAATACA
* * * *
229596 GTTTTTCCTACCATCATTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGAGAAACTAAAATAG
196 GCTTTTCCTACCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGAGAAACTAGAATAG
* * * * *
229661 TCAAACTAATCCTTGTTCTTTTCAGGATTAGGCACCATAAACATAGGCTTCTCATAACGATACAT
261 TCAAACTAATCCCTGTTCTTTTCAGGATTAGGCACCATAAACGTAGTCTTCTCATAAGGATACAC
* * * *
229726 GATATTGATGCTTTGGTTTTTGAAAGAAAGGCTTTCTTCTCGC-CAATTTTTCTAAAGTCTAAC-
326 GATATTGATCCTTTGG-TTTTGAAAGAAAGGCTTTCTTC-CCCTCAATTTTTATAAAGTCTGACA
** *
229789 TTTTGCCTCAAATGAGACAAACATTGATTCTAGTAATGGCCTTCATTCATTTTGTAATTAGGCAC
389 TCGTGCCTCAAACGAGACAAACATTGATTCTAGTAATGGCCTTCATTCATTTTGTAATTAGGCAC
229854 TATAAACACATTCTTCACATTAGG
454 TATAAACACATTCTTCACATTAGG
* * *
229878 ATAAAAGATAATGATGATTTTTTTTTGCATGAAAATCTTTTCTTTGCCTTATTTACCTTAAAATC
1 ATAAAGGATAATGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCTTATTTACCTTAAAATC
* * * *
229943 AAAGTTTATCCCTTAATTAAGGCAAGAATCGATTCTTGTAATAATCTCCATTCTTTTCAAGATTG
66 AAAGTTTATCCCTTAAATAAGGCAAGCATCGATTCTCGTAATAGTCTCCATTCTTTTCAAGATTG
* * * *
230008 GGAAACAAAAACACATTCCTTTTATTAGCATACATGACGTTGATCCTTTGGTGACGCAAAATACA
131 GGAAACAAAAACACATTCCTTTCATTAGCGTACATGACATTGATGCTTTGGTGACGCAAAATACA
* * *
230073 -CTTTTCCTACCACCGTTTTTGATAGAATCAAAGTTTGTCACTTAAATAAGATAAATTAGAATAG
196 GCTTTTCCTACCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGAGAAACTAGAATAG
*
230137 TCAAACTAATCCCTATTCTGTTT-AGGATTAGGCACCATAAACGTAGTCTTCTCATAAGGATACA
261 TCAAACTAATCCCTGTTCT-TTTCAGGATTAGGCACCATAAACGTAGTCTTCTCATAAGGATACA
* * *
230201 CGATATTGATCCTTTGGTTTTTGAAAGAAAGGCTTTCTTCCACTTAATTTTTGTAAAGTCTGACA
325 CGATATTGATCCTTTGG-TTTTGAAAGAAAGGCTTTCTTCCCCTCAATTTTTATAAAGTCTGACA
* *
230266 TCGTGCCTCAAACGAGACAAACATTGATTCCAGTAATGGCCTTCATTCAATTTGTAATTAGGCAC
389 TCGTGCCTCAAACGAGACAAACATTGATTCTAGTAATGGCCTTCATTCATTTTGTAATTAGGCAC
*
230331 TATGAACACATTCTTCACATTAGG
454 TATAAACACATTCTTCACATTAGG
*
230355 ATAAAGGATAATGATGATTTTCTTTTGCATGAAAATCTTTTCTTTGCCTTATTTACCTTAAAATC
1 ATAAAGGATAATGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCTTATTTACCTTAAAATC
* * *
230420 AAAGTTTATCCCTTAATTAAGGCAAGAATCGATTCTTGTAATAGTCTCCATTCTTTTCAAGATTG
66 AAAGTTTATCCCTTAAATAAGGCAAGCATCGATTCTCGTAATAGTCTCCATTCTTTTCAAGATTG
* * * * *
230485 GGAAACAAAAACACATTCCTTTTATTAGCATACAAGACATTGATGCTTTGGTGACACAATATACA
131 GGAAACAAAAACACATTCCTTTCATTAGCGTACATGACATTGATGCTTTGGTGACGCAAAATACA
* * *
230550 -ATTTTCCTACCACCGTTTTTGATAGAATCAAAGTTTGTCACTTAAAT-A-AGAAATTAGAATAG
196 GCTTTTCCTACCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGAGAAACTAGAATAG
* * * *
230612 TCAAACTAATTCCC-GTTCTTTTTAGGATTAGGCACCATAAACATAGGCTTCTCATAACGATACA
261 TCAAACTAA-TCCCTGTTCTTTTCAGGATTAGGCACCATAAACGTAGTCTTCTCATAAGGATACA
* * * * * *
230676 TGATATTGATGCTTTGGTTTTTGAAAGAAAGGTTTTCTTCTCGC-CAA-TTTTCTAAAGTCTAAC
325 CGATATTGATCCTTTGG-TTTTGAAAGAAAGGCTTTCTTC-CCCTCAATTTTTATAAAGTCTGAC
** *
230739 -TTTTGCCTCAAACGAGACAAACATTGATTCTAGTAATGGCCTTCATTCATTGTGTAATTAGGCA
388 ATCGTGCCTCAAACGAGACAAACATTGATTCTAGTAATGGCCTTCATTCATTTTGTAATTAGGCA
230803 CTATAAACACATTCTTCACATTAGG
453 CTATAAACACATTCTTCACATTAGG
* * * *
230828 ATAAAAGATAATGATGCTTTTCTTTTCCATCGAAATCTTTTCTTTGCCTTATTTACCTTAAAATC
1 ATAAAGGATAATGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCTTATTTACCTTAAAATC
** * * * *
230893 AATTTTTATCCCTTAAATAAAGCAAGCATCGA--CTCATAACT-GTCTCAATTTTTTTCAAGATT
66 AAAGTTTATCCCTTAAATAAGGCAAGCATCGATTCTCGTAA-TAGTCTCCATTCTTTTCAAGATT
* ** * *
230955 --TAAATCCAAAAGTAGATTCCCTTCATTAG-GATACATGACATTGATGCTTTGGTGACGCAAAA
130 GGGAAA--CAAAAACACATTCCTTTCATTAGCG-TACATGACATTGATGCTTTGGTGACGCAAAA
* * * * * * * * * *
231017 -AGAGGTTTTCCTACCATCATTTTTGATAGAATGAAAGTTTGTCTCTAAAATTAGAAAAATTGGA
192 TACAGCTTTTCCTACCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGAGAAACTAGA
* * * * * * *
231081 ATAGTTAAACTAATCACTATTCTTTTCAGGATTAAGCACTATAAACGCAGTCTTTTCATAAGGAT
257 ATAGTCAAACTAATCCCTGTTCTTTTCAGGATTAGGCACCATAAACGTAGTCTTCTCATAAGGAT
* * * * *
231146 ATACGATATTGA-CGCTTTGGTTTTGAAAGATAGGCTTTCTTCCACTTAATTTTTGTAAAGTCTG
322 ACACGATATTGATC-CTTTGGTTTTGAAAGAAAGGCTTTCTTCCCCTCAATTTTTATAAAGTCTG
* * * * *
231210 AGATCGTTCCTTAAACGAGACAAACATTGATTCCAGTAATGGCCTTCATTCAATTTGTAATTAGG
386 ACATCGTGCCTCAAACGAGACAAACATTGATTCTAGTAATGGCCTTCATTCATTTTGTAATTAGG
*
231275 CACTATGAACACATTCTTCACATTAGG
451 CACTATAAACACATTCTTCACATTAGG
*
231302 ATAAAGGATAATGATGATTTTCTTTTGCATGAAAATCTTTTCTTTGCCTTATTTACCTTAAAATC
1 ATAAAGGATAATGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCTTATTTACCTTAAAATC
* ** * *
231367 AAAGTTTTTCCCTTAGTTAAGGCAAGAATCGATTCTTGTAATAGTCTCCATTCTTTTCAAGATTG
66 AAAGTTTATCCCTTAAATAAGGCAAGCATCGATTCTCGTAATAGTCTCCATTCTTTTCAAGATTG
* *
231432 GGAAACAAAAACACATTCCTTTTATTAGCGTACATGACATTGATGCTTTGGTGACGCAATATACA
131 GGAAACAAAAACACATTCCTTTCATTAGCGTACATGACATTGATGCTTTGGTGACGCAAAATACA
* * * * * * *
231497 -ATTTTCCTACGACCGTTTTTGATAGAATCAAAGTTTTTCACTTAAATAAAATAAATTAGAATAG
196 GCTTTTCCTACCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGAGAAACTAGAATAG
* * * * *
231561 TCAAACTAATCCCCGTTCTTTTTAGGAATAGGCACCATTAACGTAGTCTTCTTATAAGGATACAC
261 TCAAACTAATCCCTGTTCTTTTCAGGATTAGGCACCATAAACGTAGTCTTCTCATAAGGATACAC
* * * *
231626 GATATTGATGCTTTAGTTTTGAAAGAAAGGCTTTCTTCCCCCCAATTTTTGTAAAGTCTGACATC
326 GATATTGATCCTTTGGTTTTGAAAGAAAGGCTTTCTTCCCCTCAATTTTTATAAAGTCTGACATC
* * * * *
231691 ATGCCTCAAGCGAGACAAACTTTGATTCTGGAAATGGCCTTCATTCATTTTGTAA-TAGGCACTA
391 GTGCCTCAAACGAGACAAACATTGATTCTAGTAATGGCCTTCATTCATTTTGTAATTAGGCACTA
* * *
231755 TAAACACTTTTTTCACGTTAGG
456 TAAACACATTCTTCACATTAGG
** * * * *
231777 ATAAACAATAATGATGATTTTCGTCTGTAAGGAAATCTTTTCTTTGCCTTATTTACCTTAAAATC
1 ATAAAGGATAATGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCTTATTTACCTTAAAATC
* * *
231842 AAAGTTTATCCCTTAAATAAGGCAAGCATCGATTCTCGTAACAATCTCCATTCTTTTCAAGATTC
66 AAAGTTTATCCCTTAAATAAGGCAAGCATCGATTCTCGTAATAGTCTCCATTCTTTTCAAGATTG
* * * * * * *** * *
231907 AGAACCAAGAGCAGATTCCCTTCATTAGAAAACATGACATTGTTGCTTTGGTGACGCAAAA-AGA
131 GGAAACAAAAACACATTCCTTTCATTAGCGTACATGACATTGATGCTTTGGTGACGCAAAATACA
* * * * * * *
231971 GCTTTTCATACCACCGTTTTTCATGGATTTAAAGTTTGTCTTTTAAATTAGAGAAACTAGAATAG
196 GCTTTTCCTACCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGAGAAACTAGAATAG
* * *
232036 TCAAACTAATCCCTGCTCTTTTTAGGATTAGGCACCATAAACATAGTCTTCTCATAAGGATACAC
261 TCAAACTAATCCCTGTTCTTTTCAGGATTAGGCACCATAAACGTAGTCTTCTCATAAGGATACAC
* *
232101 GATATTGA-CGCTTTTGTTTTGAAAGAAAGGC-TTCTTTCCACC-CAATTTTTGTAAAGTCTGAC
326 GATATTGATC-CTTTGGTTTTGAAAGAAAGGCTTTC-TTCC-CCTCAATTTTTATAAAGTCTGAC
* * * * * * * * *
232163 TTCGTGTCTCTAACGAGACATACGTTGATTCTAGCAATAGCCTTCATTTATTTCGTAATTAGGCA
388 ATCGTGCCTCAAACGAGACAAACATTGATTCTAGTAATGGCCTTCATTCATTTTGTAATTAGGCA
* * * *
232228 TTATAAACACATTATTCACAATAAG
453 CTATAAACACATTCTTCACATTAGG
* * * * * *
232253 ATAATGGATAATGATGATTTCCTTTTCCATGAAAATCTTTTCTTTGTCTTATTTACTTTAAAATC
1 ATAAAGGATAATGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCTTATTTACCTTAAAATC
* * * * * *
232318 AATGTTCATCCCTTAAATAAAGCAAGCATCGATTCTCCTAATAATCTCCATTCTTTTCAAGATTA
66 AAAGTTTATCCCTTAAATAAGGCAAGCATCGATTCTCGTAATAGTCTCCATTCTTTTCAAGATTG
* * * *
232383 GGAAACAAAAACACATTCCTTTCTTTAGTGTACACGACATTGATGCTTTGGTGACGCAAAA-AGA
131 GGAAACAAAAACACATTCCTTTCATTAGCGTACATGACATTGATGCTTTGGTGACGCAAAATACA
* * *
232447 GCTTCTCTTACCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATTAGAGAAACTAGAATAG
196 GCTTTTCCTACCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGAGAAACTAGAATAG
* * *
232512 TCAAACTAATCCCTGTTCTTTTCAAGATTAGGCACCATAAACGTAGTATTCTCATAAGGATACAT
261 TCAAACTAATCCCTGTTCTTTTCAGGATTAGGCACCATAAACGTAGTCTTCTCATAAGGATACAC
* *
232577 GATATTGA-CGCTTTGGTTTTGAAAGAAAGGCTTTCTTCCACCT-AATTTTTGTAAAGTCAGACA
326 GATATTGATC-CTTTGGTTTTGAAAGAAAGGCTTTCTTCC-CCTCAATTTTTATAAAGTCTGACA
* * * *
232640 TCGTGCCTCAAACGAGACAAACATTGGTTCCAGTGATGGCCTTCATTCATTTTTTAATTAGGCAC
389 TCGTGCCTCAAACGAGACAAACATTGATTCTAGTAATGGCCTTCATTCATTTTGTAATTAGGCAC
* *
232705 CATAAACACATTCTACACATTAGG
454 TATAAACACATTCTTCACATTAGG
*
232729 ATAAAGGATAATGATGATTTTCTTTTGCATGAAAATCTTTTCTTTGCCTTATTTACCTTAAAATC
1 ATAAAGGATAATGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCTTATTTACCTTAAAATC
* * *
232794 AAAGTTTATCCCTTAATTAAGGCAAGAATCGATTCTCGTAATAGTCTCCACTCTTTTCAAGATTG
66 AAAGTTTATCCCTTAAATAAGGCAAGCATCGATTCTCGTAATAGTCTCCATTCTTTTCAAGATTG
* * * * * *
232859 GAAAACAAAAACACAATCCTTTTATTAGCGTACCTGACATTGTTGCTTTGGGGACGCAAAATAC-
131 GGAAACAAAAACACATTCCTTTCATTAGCGTACATGACATTGATGCTTTGGTGACGCAAAATACA
* * *
232923 GCTTTTCCTACTACCAGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGATAAATTAGAATA
196 GCTTTTCCTACCACC-GTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGAGAAACTAGAATA
* * * *
232988 GTCAAACTAATCCCTGTTCTTTTCAGGATTGGGCACCATGAACATAGTCTTTTCATAAGGATACA
260 GTCAAACTAATCCCTGTTCTTTTCAGGATTAGGCACCATAAACGTAGTCTTCTCATAAGGATACA
* * * * *
233053 CGATATTTGATGCTTTGGTTTTGAAATAAAGGCTTTCTTCTCGC-CAATTTTTCTAATA-TTTGA
325 CGATA-TTGATCCTTTGGTTTTGAAAGAAAGGCTTTCTTC-CCCTCAATTTTTATAA-AGTCTGA
* ** * * * * *
233116 CTTC-TGCCTCAAACGAGATGAACATTGATTCTCGAAAAGGCCTTCACTCAATTTGTAATTAGGC
387 CATCGTGCCTCAAACGAGACAAACATTGATTCTAGTAATGGCCTTCATTCATTTTGTAATTAGGC
* *
233180 ACTATAAACATATTCTTCACATTGGG
452 ACTATAAACACATTCTTCACATTAGG
* ** *
233206 ATAAAGGATAATGATGATTTTCTTTTGCATGGAAGTCTTTTCACTGCCTTATTTACTTTAAAATC
1 ATAAAGGATAATGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCTTATTTACCTTAAAATC
* * * * *
233271 AAAGTGTATCCCATAAACAAGACAAGCATCGATTCTCATAATAGTCTCCATTCTTTTCAAGATTG
66 AAAGTTTATCCCTTAAATAAGGCAAGCATCGATTCTCGTAATAGTCTCCATTCTTTTCAAGATTG
* * * * *
233336 GGAAACAAAAACACAGTCTTTTCATTAGCGTACCTAACATTGATGCTTTGGGGACGCAAAATAC-
131 GGAAACAAAAACACATTCCTTTCATTAGCGTACATGACATTGATGCTTTGGTGACGCAAAATACA
** * * * *
233400 GCTTTTCCTACCTTCATTTTTGATAGAATCAAAGTTTATCGT-TTAAATAAAAGAAACTAAAATA
196 GCTTTTCCTACCACCGTTTTTGATAGAATCAAAGTTTGTC-TCTTAAATAAGAGAAACTAGAATA
* * * *
233464 GTCAAACTAATCCTTGTTCTTTTCAAGATTAGGCACCATAAACATAGGCTTCTCATAAGGATACA
260 GTCAAACTAATCCCTGTTCTTTTCAGGATTAGGCACCATAAACGTAGTCTTCTCATAAGGATACA
* *
233529 CGATATTAATGCTTTGGTCTTTGAAAGAAAGGCTTTCTTCCCAC-CAATTTTTATAAAGT-TAGA
325 CGATATTGATCCTTTGGT-TTTGAAAGAAAGGCTTTCTTCCC-CTCAATTTTTATAAAGTCT-GA
*
233592 CATTGTGCCTCAAACGAGACAAACATTGATTCTAGTAATGGCCTTCATTCATTTTGTAATTAGGC
387 CATCGTGCCTCAAACGAGACAAACATTGATTCTAGTAATGGCCTTCATTCATTTTGTAATTAGGC
*
233657 ACTATAAACACATTTTTCACATTAGG
452 ACTATAAACACATTCTTCACATTAGG
* *
233683 ATAAAGGATAATGATGATTTTCTTTTGTATGGAAATCTTTTCTTTGCCTTATTTACCTTATAATC
1 ATAAAGGATAATGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCTTATTTACCTTAAAATC
* * * * * * * *
233748 AAGGTTTATCCCTTAAATAAAGTAAGCATCGA--CTCGTAACAGTCTCCATTCTTTTTAGGCTTC
66 AAAGTTTATCCCTTAAATAAGGCAAGCATCGATTCTCGTAATAGTCTCCATTCTTTTCAAGATTG
* * * * *
233811 AGAACCAAAAGCACATTCCCTTCATTAG-GATACATGACATTGATGCTTTGGTGACGCAAAA-AG
131 GGAAACAAAAACACATTCCTTTCATTAGCG-TACATGACATTGATGCTTTGGTGACGCAAAATAC
* ** ** * * *
233874 AGCTTTTCTTGTCATTGTTTTTGATAAAATCAAAGTTTGTCGCTTAAATTAGAGAAACTAGAATA
195 AGCTTTTCCTACCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGAGAAACTAGAATA
* * * * *
233939 GTCAAACTAATCACTGTTCTTCTCAGGATTAGGCACCATAAATGCAGTCTTCTCATAAGGATATA
260 GTCAAACTAATCCCTGTTCTTTTCAGGATTAGGCACCATAAACGTAGTCTTCTCATAAGGATACA
* * * * * * * *
234004 CAATATTGATGCTTTGGCTTTGAAAGAAAGGCTTTTTTCCACCT-AAATTTTGTAAACTTTGACA
325 CGATATTGATCCTTTGGTTTTGAAAGAAAGGCTTTCTTCC-CCTCAATTTTTATAAAGTCTGACA
* * *
234068 TCGTGCCTCAAACGAGACAAACACTGATTCCAGTAATGGCCTTCATTCATTTTGTAAATAGGCAC
389 TCGTGCCTCAAACGAGACAAACATTGATTCTAGTAATGGCCTTCATTCATTTTGTAATTAGGCAC
*
234133 TATAAACACATTCTTCACATTGGG
454 TATAAACACATTCTTCACATTAGG
* * *
234157 ATAAAGGATAATGATGATTTTTTTTTGCATGGAAATCTTTTCTATGCCTTTATTTACTTTAAAAT
1 ATAAAGGATAATGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCC-TTATTTACCTTAAAAT
* * * * * *
234222 CAAAGCTTATCTCTTAAATAAGACAGGCATCGATTCTCATAATAGTCTCCATTCTTTTCATGATT
65 CAAAGTTTATCCCTTAAATAAGGCAAGCATCGATTCTCGTAATAGTCTCCATTCTTTTCAAGATT
* * * * *
234287 GGGAAACAAAAACATATTCCTTTCATTAGCATACCTAACATTGATGCTTTGGTGACGTAAAATAC
130 GGGAAACAAAAACACATTCCTTTCATTAGCGTACATGACATTGATGCTTTGGTGACGCAAAATAC
* * * * * * * *
234352 -GTTTTTCCAACCATCATTTTTGATAGAATCAAAGTTTATCTTTTAAATAAGAAAAACTAAAATA
195 AGCTTTTCCTACCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGAGAAACTAGAATA
* *
234416 GTCAAACTAATCCCTGTTCTTTTCAAGATTAGGCACCATAAACGTAGGCTTC-CAATAAGGATAC
260 GTCAAACTAATCCCTGTTCTTTTCAGGATTAGGCACCATAAACGTAGTCTTCTC-ATAAGGATAC
* *
234480 ACGATACT-ATTGCTTTGGTTTTTGAAAGAAAGGCTTTCTTCCCGC-CAATTTTTATAAAGTCTG
324 ACGATATTGA-TCCTTTGG-TTTTGAAAGAAAGGCTTTCTTCCC-CTCAATTTTTATAAAGTCTG
* *
234543 ACTTC-TGCCTCAAACGAGACAAACATTGACTCTAGTAATGGCCTT-ATTCATTTTGTAATTAGG
386 ACATCGTGCCTCAAACGAGACAAACATTGATTCTAGTAATGGCCTTCATTCATTTTGTAATTAGG
* *
234606 CACTATAAACATATTCCTCACATTAGG
451 CACTATAAACACATTCTTCACATTAGG
* * *
234633 ATAAAGGATAATGATGATTTTCTTCTGTATGGAAATCTTTTCTTTGCCTTATTTACCTTATAATC
1 ATAAAGGATAATGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCTTATTTACCTTAAAATC
* * * * *
234698 AAGGTTTATCCCTTAAATAAGGCAAGCATCGA--CTCGTAACAGTCTCCATTCTTTTTAGGATTC
66 AAAGTTTATCCCTTAAATAAGGCAAGCATCGATTCTCGTAATAGTCTCCATTCTTTTCAAGATTG
* * * * * ** * *
234761 AGAACCAAAAGCACATTCCCTTCGTTAG-GATACATGACATTGATAATTTGGTGATGCAAAA-AG
131 GGAAACAAAAACACATTCCTTTCATTAGCG-TACATGACATTGATGCTTTGGTGACGCAAAATAC
** * * * * *
234824 AGCTTTTTTTACCACCATTTTTCATAGAATCAAAGTTTGTGTCTTAAATTAGAAAAACTAGAATA
195 AGCTTTTCCTACCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGAGAAACTAGAATA
* * * * **
234889 GTTAAACTAATCACTGTTCTTTTGAGGATTAGGCACCATAAACGCAGTCTTCTCATAAGGATGTA
260 GTCAAACTAATCCCTGTTCTTTTCAGGATTAGGCACCATAAACGTAGTCTTCTCATAAGGATACA
* * * * *
234954 CGGTATTGA-CACTTTGGTTTTGAAAGAAAGGCTTTCTTCCACTTAAATTTTGTAAAGTCTGACA
325 CGATATTGATC-CTTTGGTTTTGAAAGAAAGGCTTTCTTCCCCTCAATTTTTATAAAGTCTGACA
* * * * *
235018 TCGGGCCTCAAACGAGATAAACATTGATACCAGCAATGGCCTTCATTCATTTTGTAATTAGGCAC
389 TCGTGCCTCAAACGAGACAAACATTGATTCTAGTAATGGCCTTCATTCATTTTGTAATTAGGCAC
* *
235083 TATGAACACATTCTTCACATTAGC
454 TATAAACACATTCTTCACATTAGG
* * *
235107 ATAAAGGATAACGATGATTTTATTTTGCATGAAAATCTTTTCTTTGCCTTATTTACCTTAAAATC
1 ATAAAGGATAATGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCTTATTTACCTTAAAATC
* * *
235172 AAAGTTTATCCCTTAATTAAGGCAAGAATCGATTCTCGTAATAGTCTCCACTCTTTTCAAGATTG
66 AAAGTTTATCCCTTAAATAAGGCAAGCATCGATTCTCGTAATAGTCTCCATTCTTTTCAAGATTG
* * * * * * * * *
235237 GAAAACAAAAACAGAGTCCTTTTATTAGTGTATACGACATTGATGCTTTCGAGAACGCAAAATAC
131 GGAAACAAAAACACATTCCTTTCATTAGCGTACATGACATTGATGCTTTGGTG-ACGCAAAATAC
* * *
235302 -GCTTTCCCTACTACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATTAGAGAAACTAGAATA
195 AGCTTTTCCTACCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGAGAAACTAGAATA
* *
235366 GTCAAACTAATCCTTGTTCTTTTCAGGATTAGGCACCATAAACGTAGTCTTCCCATAAGGATACA
260 GTCAAACTAATCCCTGTTCTTTTCAGGATTAGGCACCATAAACGTAGTCTTCTCATAAGGATACA
* * * * * *
235431 CAATATTGA-CGCTTTGGTTTTGAAAGAAAGGCTTCCTTCCACCT-AATTTCTGTAATGTCAGAC
325 CGATATTGATC-CTTTGGTTTTGAAAGAAAGGCTTTCTTCC-CCTCAATTTTTATAAAGTCTGAC
* *
235494 ATCGTGCCTCAAACGAGACAAACATTGATTCCAGTAATGGCGTTCATTCATTTTGTAATTAGGCA
388 ATCGTGCCTCAAACGAGACAAACATTGATTCTAGTAATGGCCTTCATTCATTTTGTAATTAGGCA
* *
235559 CCATAAACACATTCTTCTCATTAGG
453 CTATAAACACATTCTTCACATTAGG
* * *
235584 ATAAAGGATAATGATGATTTTCCTTTGCATGAAAATCTTTTCTTTGCCTTATTTAGCTTAAAATC
1 ATAAAGGATAATGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCTTATTTACCTTAAAATC
* * * *
235649 AAAGTTTATCCCTTAATTAAGGCAAGAATCGATTCTCGTAATAGTCTCCACTCATTTCAAGATTG
66 AAAGTTTATCCCTTAAATAAGGCAAGCATCGATTCTCGTAATAGTCTCCATTCTTTTCAAGATTG
* * * * * * * *
235714 GAAAATAAAAATAGATTCCTTTTATTAGCGTATATGACATTGATGCTATCAGG-AACGCAAAATA
131 GGAAACAAAAACACATTCCTTTCATTAGCGTACATGACATTGATGCT-T-TGGTGACGCAAAATA
* * * * *
235778 CA--TTTTCCCACTACCATTTTTGATAGAATCAAAGTTTGTCTCTTAAATTAGAAAAACTAGAAT
194 CAGCTTTTCCTACCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGAGAAACTAGAAT
* * * *
235841 AGTCAAACTAATCACTGTTCTTTTTAGGATTAGGCACCATAAATGCAGTCTTCTCATAAGGATAC
259 AGTCAAACTAATCCCTGTTCTTTTCAGGATTAGGCACCATAAACGTAGTCTTCTCATAAGGATAC
* * * * * *
235906 ACGATATTGATACTTTGATTTTGAAAGAAAGTCTTTCTCCCCCCCAATTTTTATAAAGTCTAACA
324 ACGATATTGATCCTTTGGTTTTGAAAGAAAGGCTTTCTTCCCCTCAATTTTTATAAAGTCTGACA
* * * * * *
235971 TCGTGCCTCAAATGAGACAAACATTGATTCTGGCAATGGCCTCCAATCAATTTGTAATTAGGCAC
389 TCGTGCCTCAAACGAGACAAACATTGATTCTAGTAATGGCCTTCATTCATTTTGTAATTAGGCAC
*
236036 TATAAACACATTCCTCACATTAGG
454 TATAAACACATTCTTCACATTAGG
* * * *
236060 ATAAAGGATAATGATGATTTTCTTTTACATGGAAATCTTTTCTATGCCTTATTTACTTTAAAAAC
1 ATAAAGGATAATGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCTTATTTACCTTAAAATC
* * *
236125 AAAGCTTATCCCTTAAATAAGACAAGCATCGATTCTCATAATAGTCTCCATTCTTTTCAAGATTG
66 AAAGTTTATCCCTTAAATAAGGCAAGCATCGATTCTCGTAATAGTCTCCATTCTTTTCAAGATTG
* * * *
236190 GGAAACAAAAACACATTCCTTTCATTAGTGTCCCTGACATTGATGCTTTGGTGACACAAAATAC-
131 GGAAACAAAAACACATTCCTTTCATTAGCGTACATGACATTGATGCTTTGGTGACGCAAAATACA
* * * * *
236254 GTTTTTCCTACCATCATTTTTGATAGAATCAAAGTTTATCTCTTAAATAAGAGAAACGA-AAGTA
196 GCTTTTCCTACCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGAGAAACTAGAA-TA
* * * *
236318 GTCAAACTAATCCTTGTTCTTTTCAGGATTAGGCACCATGAACATAGTCTTGTCATAAGGATACA
260 GTCAAACTAATCCCTGTTCTTTTCAGGATTAGGCACCATAAACGTAGTCTTCTCATAAGGATACA
* *
236383 CGATATTGATGCTTTGGTTTTTGAAAGAAAGGCTTTCTTCTCGC-CAATTTTTATAAAGTCTGAC
325 CGATATTGATCCTTTGG-TTTTGAAAGAAAGGCTTTCTTC-CCCTCAATTTTTATAAAGTCTGAC
** * * *
236447 -TTTTGCCTCAAATGAGGCAAATATTGATTCTAGTAATGGCCTTCATTCATTTTGTAATTAGGCA
388 ATCGTGCCTCAAACGAGACAAACATTGATTCTAGTAATGGCCTTCATTCATTTTGTAATTAGGCA
236511 CTATAAACACATTCTTCACATTAGG
453 CTATAAACACATTCTTCACATTAGG
* * *
236536 ATAAAGGATAATGATGATTTTCTTTTACATGGAAATCTTTTCTATGCCTTATTTACTTTAAAATC
1 ATAAAGGATAATGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCTTATTTACCTTAAAATC
* * * ** *
236601 AAAGCTTATCCCCTAAATAAGACAAGCATCGATTCTAATAATAGTCTCCATTCTTTTTAAGATTG
66 AAAGTTTATCCCTTAAATAAGGCAAGCATCGATTCTCGTAATAGTCTCCATTCTTTTCAAGATTG
* * * *
236666 GGAAACAAAAACACAATCCTTTCAATAGCGTCCCTGACATTGATGCTTTGGTGACGCAAAATAC-
131 GGAAACAAAAACACATTCCTTTCATTAGCGTACATGACATTGATGCTTTGGTGACGCAAAATACA
* * * *
236730 GCTTTTCCTACCATCATTTTTGATAGAATCAAAGTTTATCTCTTAAATAAGAGAAACTAAAATAG
196 GCTTTTCCTACCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGAGAAACTAGAATAG
* * * *
236795 TCAAACTAATCCCTGTTCTTTTCAAGATTAGGCACCATAGACGTAGGCTTCTCATAAAGATACAC
261 TCAAACTAATCCCTGTTCTTTTCAGGATTAGGCACCATAAACGTAGTCTTCTCATAAGGATACAC
* *
236860 GATATTGATGCTTTGGTTTTTGAAAGAAAGGCTTTATTCCCGC-CAATTTTTATAAAGTCTGAC-
326 GATATTGATCCTTTGG-TTTTGAAAGAAAGGCTTTCTTCCC-CTCAATTTTTATAAAGTCTGACA
** * * *
236923 TTTTGCCTCAAACGAGACAAATATTGATTATAGTAATGGCCTTCATTCATTTTGTAATTAGGGAC
389 TCGTGCCTCAAACGAGACAAACATTGATTCTAGTAATGGCCTTCATTCATTTTGTAATTAGGCAC
236988 TATAAACACATTCTTCACATTAGG
454 TATAAACACATTCTTCACATTAGG
* * * * *
237012 ATAAAGGATAATGATGCTTTTCTTTTGCA-GGAAAATCTTTTCTTTGCCTTTTTTGCATTAACAT
1 ATAAAGGATAATGATGATTTTCTTTTGCATGG-AAATCTTTTCTTTGCCTTATTTACCTTAAAAT
* * *
237076 TAAAGTTTATCCTTTAAATAAGGCAAGCATCGA--CTCGTAACAGTCTCCATTCTTTTCAAGATT
65 CAAAGTTTATCCCTTAAATAAGGCAAGCATCGATTCTCGTAATAGTCTCCATTCTTTTCAAGATT
** * * * * * *
237139 CAGAACCAAAAGCACATTCCCTTCATTAG-GATACGTGACATTGATGCTTTGGTGTCACAAAA-A
130 GGGAAACAAAAACACATTCCTTTCATTAGCG-TACATGACATTGATGCTTTGGTGACGCAAAATA
* * * * * *
237202 GAGCTTTTCTTGCCACTGTTTTTGATAGAATCAAAGTTTATCTCTTAAATTAGAGAAACTAGAAT
194 CAGCTTTTCCTACCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGAGAAACTAGAAT
* * * * * *
237267 AGTCAAACTAATCACTGTTCTTTTCAGGATTAGGCACCGTAAATGCAGTCTTCTTATAAGGATAT
259 AGTCAAACTAATCCCTGTTCTTTTCAGGATTAGGCACCATAAACGTAGTCTTCTCATAAGGATAC
* * * *
237332 ACTGATATTGA-CGCTTTGGTTTTGAAAGAAAGGCTTT-TCTCAACCT-AAATTTTGTAAAGTTT
324 AC-GATATTGATC-CTTTGGTTTTGAAAGAAAGGCTTTCT-TC-CCCTCAATTTTTATAAAGTCT
* * * *
237394 GACATCGTGCCTCAAACGAGACAAACATTAATTCCAGTAATGGCTTTCATTCAGTTTGTAATTAG
385 GACATCGTGCCTCAAACGAGACAAACATTGATTCTAGTAATGGCCTTCATTCATTTTGTAATTAG
* *
237459 GCACAATAAACACATTCTTCGCATT-GG
450 GCACTATAAACACATTCTTCACATTAGG
*
237486 AATAAAGGATAATGATGATTTTCTTTTGCAAGGAAATCTTTTCTTTGCCTTATTTACCTTAAAAT
1 -ATAAAGGATAATGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCTTATTTACCTTAAAAT
** * * * *
237551 CAAAGTTTATCATTTAAATAAGGCAAGCATTGATTCTCGTAACAGTCTCCATTCATTTCATGATT
65 CAAAGTTTATCCCTTAAATAAGGCAAGCATCGATTCTCGTAATAGTCTCCATTCTTTTCAAGATT
* * * * * *
237616 CGGAACCAAAAGCACATTCCCTTCATTAG-GATACATGACATTGATGCTTTGGTGATG-TAAATA
130 GGGAAACAAAAACACATTCCTTTCATTAGCG-TACATGACATTGATGCTTTGGTGACGCAAAATA
* * * * * * * *
237679 GAGCTTTTCTTACCACCGTTTTTCA-ATGAGTCAAAGTTTGCCTTTTAAATTAGAAAAACTAGAA
194 CAGCTTTTCCTACCACCGTTTTTGATA-GAATCAAAGTTTGTCTCTTAAATAAGAGAAACTAGAA
* * * *
237743 TAGTCAAACTAATCACTGTTCTTTTCA-GATTAGGCACCATAAAATGCAGTCTTCTCATATGGAT
258 TAGTCAAACTAATCCCTGTTCTTTTCAGGATTAGGCACCAT-AAACGTAGTCTTCTCATAAGGAT
* * * * *
237807 ATACGATATTGA-CGCTTTGGTTTTGAAAGAAAGGCTTTTTTCCACCT-AAATTTTGTAAAGTTT
322 ACACGATATTGATC-CTTTGGTTTTGAAAGAAAGGCTTTCTTCC-CCTCAATTTTTATAAAGTCT
* * *
237870 GACATCGTGCCTCAAATGACACAAACATTGATTCCAGTAATGGCCTTCATTCATTTTGTAATTAG
385 GACATCGTGCCTCAAACGAGACAAACATTGATTCTAGTAATGGCCTTCATTCATTTTGTAATTAG
* *
237935 GCACTATGAACACATTCGTCACATTAGG
450 GCACTATAAACACATTCTTCACATTAGG
* *
237963 ATAAAGGATAATGATGATTTTCTTTTGCATGAAAATCTTTTTTTTGCCTTATTTACCTTAAAATC
1 ATAAAGGATAATGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCTTATTTACCTTAAAATC
* * * *
238028 AAAGTTTATCCCTTAATTAAGGCAAGAACCGATTCTCGTAACAGTCTCCACTT-TTTTCAAGATT
66 AAAGTTTATCCCTTAAATAAGGCAAGCATCGATTCTCGTAATAGTCTCCA-TTCTTTTCAAGATT
* * * *
238092 GGAAAACAAAAAGACATTCCTTTTATTAGCTTACATGACATTGATGCTTTCGG-GAACGCAAAAT
130 GGGAAACAAAAACACATTCCTTTCATTAGCGTACATGACATTGATGCTTT-GGTG-ACGCAAAAT
* * * * *
238156 A-TGCTTTTCCTACTATCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATTAGAAAAACTAGAA
193 ACAGCTTTTCCTACCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGAGAAACTAGAA
* *
238220 TAGTCAAACTAATCCCTGTTCTTTTTAGGATTAGGCCCCATAAACGTAGTCTTCTCATAAGGATA
258 TAGTCAAACTAATCCCTGTTCTTTTCAGGATTAGGCACCATAAACGTAGTCTTCTCATAAGGATA
* * *
238285 CACGGTATTGA-CACTTTGGTTTTGAAAGAAAGGCTTTCTTCAACCT-AATTTTTGTAAAGT-TA
323 CACGATATTGATC-CTTTGGTTTTGAAAGAAAGGCTTTCTTC-CCCTCAATTTTTATAAAGTCT-
* *
238347 GACATTGTGCCTCAAACAAGACAAACATTGATTCCT-GTAATGGCCTTCATTCATTTTGTAATTA
385 GACATCGTGCCTCAAACGAGACAAACATTGATT-CTAGTAATGGCCTTCATTCATTTTGTAATTA
238411 GGCACTATAAACACATTCTTCACATTAGG
449 GGCACTATAAACACATTCTTCACATTAGG
* * * * * ** * * *
238440 ATAAAGGATAACGATGATTTTCTTTTACAAGAAAATCTTTTCCTCCCCATATTTTCCTTAAGATC
1 ATAAAGGATAATGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCTTATTTACCTTAAAATC
* * * *
238505 AAAGTTTATCCTTTAAATAAGGCAAGCATCGATTCTCGTAACAGTCTCCATTCATTTCAAGATTC
66 AAAGTTTATCCCTTAAATAAGGCAAGCATCGATTCTCGTAATAGTCTCCATTCTTTTCAAGATTG
* * * * * * * *
238570 GGAACCAAAAGCACATTCCCTTCATTAAG-ATACATGACGTTGCA-GCTTCGGTGACAC-AAACA
131 GGAAACAAAAACACATTCCTTTCATT-AGCGTACATGACATTG-ATGCTTTGGTGACGCAAAATA
* * * * * * *
238632 GAGCTTTTCTTACCACCGTTTTTCATTGAATCGAAGTTTGTCTCTTAAATTAGAAAAACTAGAAT
194 CAGCTTTTCCTACCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGAGAAACTAGAAT
* * * *
238697 AGTCAAACTAATCACTGTTCTTTTCAGGATTAGCCACCATAAATGTAGTCTTCTCATAAGGATAT
259 AGTCAAACTAATCCCTGTTCTTTTCAGGATTAGGCACCATAAACGTAGTCTTCTCATAAGGATAC
* * * * * * *
238762 ACGATATTGATGCTTTGGTTTTGAAAAAAAAGCTTTTTTCCACCT-AAATTTTGTAAAGTTTGAC
324 ACGATATTGATCCTTTGGTTTTGAAAGAAAGGCTTTCTTCC-CCTCAATTTTTATAAAGTCTGAC
* * *
238826 ATCGTGCCTCAAACAAGACAAACATTGATTCCT-GTAATCGCCGTCATTCATTTTGTAATTAGGC
388 ATCGTGCCTCAAACGAGACAAACATTGATT-CTAGTAATGGCCTTCATTCATTTTGTAATTAGGC
*
238890 ACCATAAACACATTCTTCACATTAGG
452 ACTATAAACACATTCTTCACATTAGG
*
238916 ATAAAGGATAATGATGATTTTCGTTTGCAT-GAAAGTCTTTTCTTTGCCTTATTTACCTTAAAAT
1 ATAAAGGATAATGATGATTTTCTTTTGCATGGAAA-TCTTTTCTTTGCCTTATTTACCTTAAAAT
* * * *
238980 CAAAGTTTATCCCTTAATTAAGGTAAGAATCGATTCTCGTAATAGTCTCCACTCTTTTCAAGATT
65 CAAAGTTTATCCCTTAAATAAGGCAAGCATCGATTCTCGTAATAGTCTCCATTCTTTTCAAGATT
* * *
239045 GGAAAACAAAAACACATTCCTTTTATTAGCGTACATGACATTGATGCTTTGG-GACGCAAACTA-
130 GGGAAACAAAAACACATTCCTTTCATTAGCGTACATGACATTGATGCTTTGGTGACGCAAAATAC
* * * * * * **
239108 GGTTTTTCCTACTACCGTTTTTGATAGAAGCAAAGTTTATCTCTTAAATAAGACAAGTTAGAATA
195 AGCTTTTCCTACCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGAGAAACTAGAATA
* * * *
239173 GTCAAACTAATCCATGTT-TTGTTCAGG--TAGGCACTATAAACATCGTCTTCTCATAAGGATAC
260 GTCAAACTAATCCCTGTTCTT-TTCAGGATTAGGCACCATAAACGTAGTCTTCTCATAAGGATAC
* * * * * *
239235 ACGATACTGATGCTTTGATTTTGAAAGAAAGGCTTTCTTCCCCCCAATTCTTATAAAGTCTAACA
324 ACGATATTGATCCTTTGGTTTTGAAAGAAAGGCTTTCTTCCCCTCAATTTTTATAAAGTCTGACA
* * * * * *
239300 TCGTGCCTCAAATGAGACAAACATTAATTCTGGAAATGGCTTTCATTCAATTTGTAATTAGGCAC
389 TCGTGCCTCAAACGAGACAAACATTGATTCTAGTAATGGCCTTCATTCATTTTGTAATTAGGCAC
*
239365 TATAAACACATTCTTCATATTAGG
454 TATAAACACATTCTTCACATTAGG
** * * *
239389 ATAAAGGATAATGATGATTTTCTTTTATATGGAAATCTTTTCTATGCCTTATTTACTTTGAAATC
1 ATAAAGGATAATGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCTTATTTACCTTAAAATC
* ** ** *
239454 AAAGCTTATCCCTTAAATAAGATAAGCATCGATTCTTATAATAGTCTCCATTCTTTTCAAGATTA
66 AAAGTTTATCCCTTAAATAAGGCAAGCATCGATTCTCGTAATAGTCTCCATTCTTTTCAAGATTG
* * * * * *
239519 GGAAACAAAAACACATTCCTTTCATTAGCGTCCCTGACATAGAAGCTTTGGCGATGCAAAATACA
131 GGAAACAAAAACACATTCCTTTCATTAGCGTACATGACATTGATGCTTTGGTGACGCAAAATACA
* *** * * *
239584 -CTTTTCCAACCATTATTTTTGATAGAATCAAAGTTTATCTCTTAAATAAGAGAAACTAAAACAG
196 GCTTTTCCTACCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGAGAAACTAGAATAG
*
239648 TCAAACTAATCCCTGTTCTTTTCAGGATTAGGCA-CATAAACGTAGGCTTCTCATAAGGATACAC
261 TCAAACTAATCCCTGTTCTTTTCAGGATTAGGCACCATAAACGTAGTCTTCTCATAAGGATACAC
* *
239712 GATATTGATGCTTTGGTTTTTGAAAGAAAGGCTTTC-TCCCCAGCAATTTTTATAAAGTCTGACA
326 GATATTGATCCTTTGG-TTTTGAAAGAAAGGCTTTCTTCCCC-TCAATTTTTATAAAGTCTGACA
* ** *
239776 T-TTGTATCAAACGAGACAAATATTGATTCTAGTAATGGCCTTCATTCATTTTGTAATTAGGCAC
389 TCGTGCCTCAAACGAGACAAACATTGATTCTAGTAATGGCCTTCATTCATTTTGTAATTAGGCAC
239840 TATAAACACATTCTTCACATTAGG
454 TATAAACACATTCTTCACATTAGG
* * * * *
239864 ATAAAGGATAACGATGATTTTCTTTTGCACGAAAATCTTTTCTTTGCCTTTTTTACATTAAAATC
1 ATAAAGGATAATGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCTTATTTACCTTAAAATC
* * * * *
239929 AAAGTTTTTCCCTTAAATAAGGCAAGCATCG-GT-TCGTAACAGTCTCCATTCCTTTCAAGATTC
66 AAAGTTTATCCCTTAAATAAGGCAAGCATCGATTCTCGTAATAGTCTCCATTCTTTTCAAGATTG
* * * * * * *
239992 AGAACCAAAAGCACATTCCCTTCATTAGAAG-ACATGACATTGATGCTTTGGTAACGCAAAA-AG
131 GGAAACAAAAACACATTCCTTTCATTAG-CGTACATGACATTGATGCTTTGGTGACGCAAAATAC
* * * * * *
240055 AGCTTTTCTTGCCACTGTTTTTGATAAAATCAAAGTTTATCTCTTAAATTAGAGAAACTAGAATA
195 AGCTTTTCCTACCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGAGAAACTAGAATA
* * ** * * * * *
240120 GTCATACTAAGCATTGTTCTTTTCAAGATTAGGCACCATAAATGCAGTCTTCACATAAGGATATA
260 GTCAAACTAATCCCTGTTCTTTTCAGGATTAGGCACCATAAACGTAGTCTTCTCATAAGGATACA
* * * *
240185 CGATATTGA-CACTTTGGTTTTGAAAGAAAGGCTTTTTTCCACCT-AAATTTTGTAAAGTTTGAC
325 CGATATTGATC-CTTTGGTTTTGAAAGAAAGGCTTTCTTCC-CCTCAATTTTTATAAAGTCTGAC
* *
240248 ATCGTGCCTCAAACTAGACAAACATTGATTCCAGTAATGGCCTTCATTCATTTTGTAATTAGGCA
388 ATCGTGCCTCAAACGAGACAAACATTGATTCTAGTAATGGCCTTCATTCATTTTGTAATTAGGCA
* *
240313 CAATAAACACATTCTTCACATTAAG
453 CTATAAACACATTCTTCACATTAGG
* * *
240338 ATAAAGGATAATGATGATTTTCTTTTGCATGAAAATCTTTTCTTTACCTTATTTAGCTTAAAATC
1 ATAAAGGATAATGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCTTATTTACCTTAAAATC
* * * * * *
240403 AAAGTTTATCCCTTAATTAAGGTAAGAATCGATTCTCATAACAGTCTCTATTCTTTTCAAGATTG
66 AAAGTTTATCCCTTAAATAAGGCAAGCATCGATTCTCGTAATAGTCTCCATTCTTTTCAAGATTG
* * *
240468 GGAAACAAAAACACAGTCCTTTTATTAGCGTACATGACATTGATGCATTGGTGACGCAAAATACA
131 GGAAACAAAAACACATTCCTTTCATTAGCGTACATGACATTGATGCTTTGGTGACGCAAAATACA
* * * *
240533 -CTCTTCTTACCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGATAAATTAGAATAG
196 GCTTTTCCTACCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGAGAAACTAGAATAG
* * * * *
240597 TCAAACTAATCCCTGTTCTGTTGAGGACTAGGCACTATAAACATAGTC-T-TC-T-A--ATA-A-
261 TCAAACTAATCCCTGTTCTTTTCAGGATTAGGCACCATAAACGTAGTCTTCTCATAAGGATACAC
* * * * *
240654 GA-A-T-A---TATGATATTGAAAGAAAGGCTTTCTTCCCCCCAATTTTTATAAAGTCTAACATC
326 GATATTGATCCTTTGGTTTTGAAAGAAAGGCTTTCTTCCCCTCAATTTTTATAAAGTCTGACATC
* * * * * * * *
240713 GTGACTCGAATGAGGCAAACATTGATTCTAGGAAATGGCCTTCGTTCAATTGGTAATTAGGCACT
391 GTGCCTCAAACGAGACAAACATTGATTCTA-GTAATGGCCTTCATTCATTTTGTAATTAGGCACT
* * *
240778 ATAAACACTTTCCTCACATCAGG
455 ATAAACACATTCTTCACATTAGG
* * * *
240801 ATAAAGGACAATGATGA-TTT-TTTTACATGGAAATCTTTTCTATGCCTTATTTACGTTAAAATC
1 ATAAAGGATAATGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCTTATTTACCTTAAAATC
* * *
240864 AAAGCTTATCCCTTAAATAAGACAAGCATCGATTCTCATAATAGTCTCCATTCTTTTCAAGATTG
66 AAAGTTTATCCCTTAAATAAGGCAAGCATCGATTCTCGTAATAGTCTCCATTCTTTTCAAGATTG
* * *
240929 GGAAACAAAAACACATTCCTTTCATTAGCGTCCCTGACATTGATGCTTTGGTGACACAAAATAC-
131 GGAAACAAAAACACATTCCTTTCATTAGCGTACATGACATTGATGCTTTGGTGACGCAAAATACA
* * * *
240993 GCTTTTCCTACCATCATTTTTGATAGAATCAAAGTTTATCTCTTAAATAAGAGAAACTAAAATAG
196 GCTTTTCCTACCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGAGAAACTAGAATAG
* * *
241058 TCAAACTAATCCCTGTTCTTTTCAGGATTAGGCACCATGAACATAGTCTTGTCATAAGGATACAC
261 TCAAACTAATCCCTGTTCTTTTCAGGATTAGGCACCATAAACGTAGTCTTCTCATAAGGATACAC
*
241123 GATATTGATGCTTTGGTTTTTGAAAGAAAGGCTTTCTTCCCGC-CAATTTTTATAAAGTCTGACA
326 GATATTGATCCTTTGG-TTTTGAAAGAAAGGCTTTCTTCCC-CTCAATTTTTATAAAGTCTGACA
* * *
241187 T-TTGCCTCAAACTGAGATAAATATTGATTCTAGTAATGGCCTT
389 TCGTGCCTCAAAC-GAGACAAACATTGATTCTAGTAATGGCCTT
241230 TCTTTTGCAG
Statistics
Matches: 11573, Mismatches: 1492, Indels: 393
0.86 0.11 0.03
Matches are distributed among these distances:
461 254 0.02
462 70 0.01
463 66 0.01
464 1 0.00
465 2 0.00
466 1 0.00
467 4 0.00
468 3 0.00
469 6 0.00
470 6 0.00
471 115 0.01
472 78 0.01
473 991 0.09
474 1014 0.09
475 1319 0.11
476 4446 0.38
477 2649 0.23
478 124 0.01
479 13 0.00
480 410 0.04
481 1 0.00
ACGTcount: A:0.32, C:0.18, G:0.14, T:0.35
Consensus pattern (477 bp):
ATAAAGGATAATGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCTTATTTACCTTAAAATC
AAAGTTTATCCCTTAAATAAGGCAAGCATCGATTCTCGTAATAGTCTCCATTCTTTTCAAGATTG
GGAAACAAAAACACATTCCTTTCATTAGCGTACATGACATTGATGCTTTGGTGACGCAAAATACA
GCTTTTCCTACCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGAGAAACTAGAATAG
TCAAACTAATCCCTGTTCTTTTCAGGATTAGGCACCATAAACGTAGTCTTCTCATAAGGATACAC
GATATTGATCCTTTGGTTTTGAAAGAAAGGCTTTCTTCCCCTCAATTTTTATAAAGTCTGACATC
GTGCCTCAAACGAGACAAACATTGATTCTAGTAATGGCCTTCATTCATTTTGTAATTAGGCACTA
TAAACACATTCTTCACATTAGG
Found at i:242236 original size:478 final size:476
Alignment explanation
Indices: 241228--242724 Score: 2408
Period size: 478 Copynumber: 3.1 Consensus size: 476
241218 AGTAATGGCC
* * * * * * *
241228 TTTCTTTTGCAGGAAAATCTTTTCTTTGCCATATTTGCATTAAAACCAAAGTATATCCTTTAAAT
1 TTTCTTATGCAGGAAAATCTTTTCTTTGCCTTATTTACCTTAAAATCAAAGTTTATCCGTTAAAT
* *
241293 AAGGCAAGCATCGA--CTCGTAACAGTCTCCATTGTTTTCAAGATTCAGAACCAAAAGCACATTC
66 AAGGCAAGCATCGATTCTCGTAACAGTCTCCATTCTTTTCAAGATTCAAAACCAAAAGCACATTC
* * * * *
241356 CTTTCATTAAGATACATGACATTGATGCTTTGGTGACGCAAAAAGAGGTTTTCCTACCATCGTTT
131 CTTTCATTAGGATACATGACATTGATGCTTTGGTGACGCAAATAGAGCTTTTCTTACCACCGTTT
* * * * * * *
241421 TTGATAGAATGAAAGTTTGTCTCTAAAATTAGAAAAATTGGAATAGTCAAACTAATCACTATTCT
196 TTCATTGAGTCAAAGTTTGTCTCTTAAATTAGAAAAACTAGAATAGTCAAACTAATCACTATTCT
* * * *
241486 TTTCAGGATTAAGCACCATAAACGCAGTCTTCTCATAAGGATATACGATATTAACGCTTTGGTTT
261 TTTCAGGATTAGGCACCAAAAACGCAGTCTTCTCATATGGATATACGATATTGACGCTTTGGTTT
* * * *
241551 AGAAAGAAAAGCTTTTTTCCACCTAAATTTTGTAAAGTTTGACATCGTGCCTCAAACGAGACAAA
326 TGAAAGAAAGGCGTTTTTCCACCTAAATTTTGTAAAGTTTGACATCGTGCCTCAAACAAGACAAA
* * *
241616 CATTGATTCCAGTAATGGCCTTCATTCATTTTGTAATTAGGAACAATAAACACATTCTTCACATT
391 CATTGATTCCAGTAATGGCCTTCATTCATTTTGTAATTAGGCACTATGAACACATTCTTCACATT
241681 AGGATAAAGGATAATGATGAT
456 AGGATAAAGGATAATGATGAT
* *
241702 TTTCTTTTGCAGGGAAATCTTTTCTTTGCCTTATTTACCTTAAAATCAAAGTTTATCTC-TTAAA
1 TTTCTTATGCAGGAAAATCTTTTCTTTGCCTTATTTACCTTAAAATCAAAGTTTATC-CGTTAAA
* *
241766 TAAGGTAAGCATCGATTCTCGTAACAGTCTCCATTCTTTTCAAGATTCAAAATCAAAAGCACATT
65 TAAGGCAAGCATCGATTCTCGTAACAGTCTCCATTCTTTTCAAGATTCAAAACCAAAAGCACATT
* *
241831 CCCTTCATTAGGATACATGACATTGATGCTTTGGTGACGCAAATAGAGCTTTTCTTACCACCATT
130 CCTTTCATTAGGATACATGACATTGATGCTTTGGTGACGCAAATAGAGCTTTTCTTACCACCGTT
241896 TTTCATTGAGTCAAAGTTTGTCTCTTAAATTAGAAAAACTAGAATAGTCAAACTAATCACTATTC
195 TTTCATTGAGTCAAAGTTTGTCTCTTAAATTAGAAAAACTAGAATAGTCAAACTAATCACTATTC
* *
241961 TTTTTAGGATTAGGCACCAGAAAACGCAGTCTTCTCATATGGATATACGATATTGATGCTTTGGT
260 TTTTCAGGATTAGGCACCA-AAAACGCAGTCTTCTCATATGGATATACGATATTGACGCTTTGGT
242026 TTTGAAAGAAAGGCGTTTTTCCACCTAAATTTTGTAAAGTTTGACATCCGTGCCTCAAACAAGAC
324 TTTGAAAGAAAGGCGTTTTTCCACCTAAATTTTGTAAAGTTTGACAT-CGTGCCTCAAACAAGAC
*
242091 AAACATTGATTCCAGTAATGGCCTTCATTCATTTTGTAATTAGGCACTATGAACACATTCTTTAC
388 AAACATTGATTCCAGTAATGGCCTTCATTCATTTTGTAATTAGGCACTATGAACACATTCTTCAC
242156 ATTAGGATAAAGGATAATGATGAT
453 ATTAGGATAAAGGATAATGATGAT
* * * * *
242180 TTTCTTATGCATGAAAATCTTTTTTTTGCCTTATTTACCTTAAAATTAAAGTTTATCCCTTAATT
1 TTTCTTATGCAGGAAAATCTTTTCTTTGCCTTATTTACCTTAAAATCAAAGTTTATCCGTTAAAT
* *
242245 AAGGCAAGAATCGATTCTCGTAACAGTCTCCATTCTTTTCAAGATTCGAAACCAAAAGCACATTC
66 AAGGCAAGCATCGATTCTCGTAACAGTCTCCATTCTTTTCAAGATTCAAAACCAAAAGCACATTC
*
242310 CTTTCATTAGGATACATGACATTGATGCTTTGGGGACGCAAATAGAGCTTTTCTTACCACCGTTT
131 CTTTCATTAGGATACATGACATTGATGCTTTGGTGACGCAAATAGAGCTTTTCTTACCACCGTTT
242375 TTCATTGAGTCAAAGTTTGTCTCTTAAATTAGAAAAACTAGAATAGTCAAACTAATCACTATTCT
196 TTCATTGAGTCAAAGTTTGTCTCTTAAATTAGAAAAACTAGAATAGTCAAACTAATCACTATTCT
* * *
242440 TTTCAGGATTAGGCACTATAAAACGCAGTCTTTTCATATGGATATACGATATTGACGCTTTGGTG
261 TTTCAGGATTAGGCACCA-AAAACGCAGTCTTCTCATATGGATATACGATATTGACGCTTTGGTT
242505 TTGAAAGAAAGGCGTTTTTCCACCTAAATTTTGTAAAGTTTGACATCGTGCCTCAAACAAGACAA
325 TTGAAAGAAAGGCGTTTTTCCACCTAAATTTTGTAAAGTTTGACATCGTGCCTCAAACAAGACAA
242570 ACATTGATTCCAGTAATGGCCTTCATTCA-TTTGTAATTAGGCACTATGAACACATTCTTCACAT
390 ACATTGATTCCAGTAATGGCCTTCATTCATTTTGTAATTAGGCACTATGAACACATTCTTCACAT
*
242634 TAGGATAGAGGATAATGATGAT
455 TAGGATAAAGGATAATGATGAT
* * *
242656 TTTCTTATGCATGAAAATCTTTTTTTTTTGCCTTATTTACCTTAAAATTAAAGTTTATCCGTTAA
1 TTTCTTATGCAGGAAAATC--TTTTCTTTGCCTTATTTACCTTAAAATCAAAGTTTATCCGTTAA
242721 ATAA
64 ATAA
242725 AAACACGTTC
Statistics
Matches: 954, Mismatches: 61, Indels: 12
0.93 0.06 0.01
Matches are distributed among these distances:
474 70 0.07
475 1 0.00
476 252 0.26
477 134 0.14
478 497 0.52
ACGTcount: A:0.33, C:0.18, G:0.15, T:0.35
Consensus pattern (476 bp):
TTTCTTATGCAGGAAAATCTTTTCTTTGCCTTATTTACCTTAAAATCAAAGTTTATCCGTTAAAT
AAGGCAAGCATCGATTCTCGTAACAGTCTCCATTCTTTTCAAGATTCAAAACCAAAAGCACATTC
CTTTCATTAGGATACATGACATTGATGCTTTGGTGACGCAAATAGAGCTTTTCTTACCACCGTTT
TTCATTGAGTCAAAGTTTGTCTCTTAAATTAGAAAAACTAGAATAGTCAAACTAATCACTATTCT
TTTCAGGATTAGGCACCAAAAACGCAGTCTTCTCATATGGATATACGATATTGACGCTTTGGTTT
TGAAAGAAAGGCGTTTTTCCACCTAAATTTTGTAAAGTTTGACATCGTGCCTCAAACAAGACAAA
CATTGATTCCAGTAATGGCCTTCATTCATTTTGTAATTAGGCACTATGAACACATTCTTCACATT
AGGATAAAGGATAATGATGAT
Found at i:245340 original size:476 final size:476
Alignment explanation
Indices: 242723--258611 Score: 18748
Period size: 476 Copynumber: 33.5 Consensus size: 476
242713 TCCGTTAAAT
* ** **
242723 AAAAACACGTTCCTTTTTTTAG-GATACATGACATTGATGCTTTTGG-GAATACAAAATACGCTT
1 AAAAACACATTCCTTTCATTAGCG-TACATGACATTGATGC-TTTGGTG-ACGCAAAATACGCTT
* ** * *
242786 TTGCTATTACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATTAGAGAAACGAGAATAGTCAA
63 TTCCTACCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGAGAAACTAGAATAGTCAA
* * *
242851 ACTAATCCCTGTTCTTTTCAGGATTGGGCACCATAAACGTAGTCTTCTCATAAGGATACATGATA
128 ACTAATCCCTGTTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATAAGGATACACGATA
* * * * *
242916 TTGACGCTTTAGTTTTGAAAGAAAGGCTTTCTTCCACCTAATTTTTTTAAAGT-TAGACATCGTG
193 TTGATGCTTTGGTTTTGAAAGAAAGGCTTTCTTCCCCCCAATTTTTGTAAAGTCT-GACATCGTG
* *
242980 CCTCAAACGAGACAAAAATTGATTCCAGTAATGGCCTTCATTCATTTTCTAATTAGGCACTATAA
257 CCTCAAACGAGACAAACATTGATTCCAGTAATGGCCTTCATTCATTTTGTAATTAGGCACTATAA
* * * *
243045 ACACATTCTTCACATTAGGATAAAGGACAACGATGATTTTCTCTTGCAAGAAAATCTTTTCTTTG
322 ACACATTCTTCACATTAGGATAAAGGATAATGATGATTTTCTTTTGCATGAAAATCTTTTCTTTG
* *
243110 CCATATTTAGCTTAAAATCAAAGTTTATCCCTTAAATAAGGCAAGCATCGATTCTCGTAACAGTC
387 CCTTATTTACCTTAAAATCAAAGTTTATCCCTTAAATAAGGCAAGCATCGATTCTCGTAACAGTC
*
243175 TCCATTCTTTTCAAGATTCGG-AACC
452 TCCATTCTTTTCAAGATT-GGAAAAC
* * * * * *
243200 AAAAGCACATTCCCTTCATTAAG-ATACATGACGTTGCA-GCTTCGGTGACGCAAACAGA-GCTT
1 AAAAACACATTCCTTTCATT-AGCGTACATGACATTG-ATGCTTTGGTGACGCAAA-ATACGCTT
* * * * * *
243262 TTCTTACCACCGTTTTTCATTGAATCAAAGTTTTTCTCTTAAATTAGAAAAACTAGAATAGTCAA
63 TTCCTACCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGAGAAACTAGAATAGTCAA
* *** * *
243327 ACTAATCACTGTTCTTTTCAGGATTAGGCACCATAAATGCAGTCTTCTCATAAGGATATATGATA
128 ACTAATCCCTGTTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATAAGGATACACGATA
* * * * *
243392 TTGA--CATTTGGTTTTGAAAGAAAGGCTTTTTTCCACCTAAATTTTGTAAAGTTTGACATCGTG
193 TTGATGC-TTTGGTTTTGAAAGAAAGGCTTTCTTCCCCCCAATTTTTGTAAAGTCTGACATCGTG
* * *
243455 CCTCAAACGAGACAAACATTGATTCCAGTAACGGCCTTCATTCATTTTGTAATTTGGCACCATAA
257 CCTCAAACGAGACAAACATTGATTCCAGTAATGGCCTTCATTCATTTTGTAATTAGGCACTATAA
* * *
243520 ACATATTCTTCACATTATGATAAAGGATAATGATGATTTTCGTTTGCATGAAAATCTTTTCTTTG
322 ACACATTCTTCACATTAGGATAAAGGATAATGATGATTTTCTTTTGCATGAAAATCTTTTCTTTG
* * *
243585 CCTTATTTACCTTAAAATCAAAGTTTATCCCTT-AATAAAGGTAAGAATCGATTCTCGTAACAGA
387 CCTTATTTACCTTAAAATCAAAGTTTATCCCTTAAAT-AAGGCAAGCATCGATTCTCGTAACAGT
* *
243649 CTCCACTCTTTTCAAGATTGCAAAAC
451 CTCCATTCTTTTCAAGATTGGAAAAC
* * * *
243675 -AAAACACATTCCTTTTATTAGCGTACATGACATTGATGCTTTGGGGACGCAAAATATGTTTTTC
1 AAAAACACATTCCTTTCATTAGCGTACATGACATTGATGCTTTGGTGACGCAAAATACGCTTTTC
* * *
243739 CTACTACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGATAAATTAGAATAGTCAAACT
66 CTACCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGAGAAACTAGAATAGTCAAACT
* * * * * * *
243804 AATCCCTGTTCTGTTGAGGACTAGGCACTATAAACATAGTCTTCTAATAAGAATACATGATATTG
131 AATCCCTGTTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATAAGGATACACGATATTG
* * * ** *
243869 AAGCTTTGATTTTGAAAGAAAGGCTTCCTTCCCCCCAATTTTCATAAAGTCTAACATCGTGCCTC
196 ATGCTTTGGTTTTGAAAGAAAGGCTTTCTTCCCCCCAATTTTTGTAAAGTCTGACATCGTGCCTC
* * * ** * * * * *
243934 GAATGAGGCAAACATTGATTCTGGAAATGACCTTCGTTCAATTGGTAATTAGGCACTATAAACAC
261 AAACGAGACAAACATTGATTCCAGTAATGGCCTTCATTCATTTTGTAATTAGGCACTATAAACAC
* * * * * *
243999 TTTCTTCACATCAGGATAAAGGACAATGATGATTTTCTTTTACATGGAAATCTTTTCTATGCCTT
326 ATTCTTCACATTAGGATAAAGGATAATGATGATTTTCTTTTGCATGAAAATCTTTTCTTTGCCTT
* * * * *
244064 ATTTACGTTAAAATCAAAGCTTATCCCTTAAATAAGACAAGCATCGATTCTCATAATAGTCTCCA
391 ATTTACCTTAAAATCAAAGTTTATCCCTTAAATAAGGCAAGCATCGATTCTCGTAACAGTCTCCA
*
244129 TTCTTTTCAAGATTGGGAAAC
456 TTCTTTTCAAGATTGGAAAAC
* * *
244150 AAAAACACATTCCTTTCATTAGCGTCCCTGACATTGATGCTTTGGTGACACAAAATACGCTTTTC
1 AAAAACACATTCCTTTCATTAGCGTACATGACATTGATGCTTTGGTGACGCAAAATACGCTTTTC
* * * *
244215 CTACCATCATTTTTGATAGAATCAAAGTTTATCTCTTAAATAAGAGAAACTAAAATAGTCAAACT
66 CTACCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGAGAAACTAGAATAGTCAAACT
*
244280 AATCTCTGTTCTTTTCAGGATTAGG---------C--A-----C-CATAAGGATACACGATATTG
131 AATCCCTGTTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATAAGGATACACGATATTG
* * ** * **
244328 ATGCTTTGGTTTTTGAAAGAAA-GCTTTTTTTCGGCCAATTTTTATAAAGTCTGAC-TTTTGCCT
196 ATGCTTTGG-TTTTGAAAGAAAGGCTTTCTTCCCCCCAATTTTTGTAAAGTCTGACATCGTGCCT
* *
244391 CAAACGAGACAAATATTGATTCCAGTAATGGCCTTCATTCATTTTGTAATTAGGCACAATAAACA
260 CAAACGAGACAAACATTGATTCCAGTAATGGCCTTCATTCATTTTGTAATTAGGCACTATAAACA
* **
244456 TATTCTTCACATTAGGATAAAGGATAACAATGATTTTCTTTTGCATGAAAATCTTTTCTTTGCCT
325 CATTCTTCACATTAGGATAAAGGATAATGATGATTTTCTTTTGCATGAAAATCTTTTCTTTGCCT
* *
244521 TATTTACATTAAAATCAAAGTTTATCCCTTAAATAAGGCAAGCATCGA--CTCGTAACAATCTCC
390 TATTTACCTTAAAATCAAAGTTTATCCCTTAAATAAGGCAAGCATCGATTCTCGTAACAGTCTCC
* **
244584 ATTCTTTTCAAGATT-CAGACCC
455 ATTCTTTTCAAGATTGGA-AAAC
* * * * * *
244606 AAAAGCACATTCCCTTCATTAG-GAGACATGACAATGATGCTTTGGTAACGCAAAA-AGTGCTTT
1 AAAAACACATTCCTTTCATTAGCG-TACATGACATTGATGCTTTGGTGACGCAAAATA-CGCTTT
* * *
244669 TCTTACCACTGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATTAGAGAAACTAGAATAGTCAAA
64 TCCTACCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGAGAAACTAGAATAGTCAAA
* * * * * * *
244734 CTAATCACTATTCTTTTCCA-GATTAGGCACTATAAACGCT-GCCTTCTCATAAGGATATACAAT
129 CTAATCCCTGTTCTTTT-CAGGATTAGGCACCATAAAC-ATAGTCTTCTCATAAGGATACACGAT
* * * * * * *
244797 ATTGACGCTTTGGTTTTGAAAGAAAAGCTTTTTTCCACCTAAATTTTGTAAAGTTTGACATCGTG
192 ATTGATGCTTTGGTTTTGAAAGAAAGGCTTTCTTCCCCCCAATTTTTGTAAAGTCTGACATCGTG
* * * * *
244862 CCTCAAACGAGACAAACATTGATTCTAGTAATAGCCTTCATTCATTATGTAGTTAGGCACCATAA
257 CCTCAAACGAGACAAACATTGATTCCAGTAATGGCCTTCATTCATTTTGTAATTAGGCACTATAA
* * *
244927 ACACATTCTTCACATTAGGATAAAGGACAATGATGATTTTCGTTTGCATGAAAATCTTATCTTTG
322 ACACATTCTTCACATTAGGATAAAGGATAATGATGATTTTCTTTTGCATGAAAATCTTTTCTTTG
* * * *
244992 CCTTATTTACCTTAAAATCAAAGTTTATCCCTTCATTAAGGCAAG-ACCCGATTCTCGTAATAGT
387 CCTTATTTACCTTAAAATCAAAGTTTATCCCTTAAATAAGGCAAGCA-TCGATTCTCGTAACAGT
* *
245056 CTCAACTCTTTTCAAGATTGGAAAAC
451 CTCCATTCTTTTCAAGATTGGAAAAC
* * * *
245082 AAAAACACATTCCTTTTATTAGCGTACATGACATTGATGCTGTGGGGACGCAAAATACGTTTTTC
1 AAAAACACATTCCTTTCATTAGCGTACATGACATTGATGCTTTGGTGACGCAAAATACGCTTTTC
** * * *
245147 CTATAACCGTTTTTGATAAAATCAAAGTTTGTCTCTTAAATAAGATAAATTAGAATAGTCAAACT
66 CTACCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGAGAAACTAGAATAGTCAAACT
* * * * *
245212 AATCCCTGTTCTCTTCAGGACTAGGTACTATAAACATAGTCTTCTCATGAGGATACACGATATTG
131 AATCCCTGTTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATAAGGATACACGATATTG
* * * *
245277 AAGCTTTGATTTTGAAAGAAAGGCTTTCTTCCCCCCAATTTTTATAAAGTCTAACATCGTGCCTC
196 ATGCTTTGGTTTTGAAAGAAAGGCTTTCTTCCCCCCAATTTTTGTAAAGTCTGACATCGTGCCTC
* * * ** * * * *
245342 GAATGAGGCAAACATTGATTCTGGAAATGGCCTTCGTTCAATTGGTAATTAGGCACTATAAACAC
261 AAACGAGACAAACATTGATTCCAGTAATGGCCTTCATTCATTTTGTAATTAGGCACTATAAACAC
* *
245407 ATTCTTCACATTAGGATAAAGGATAACGATGATTTTCTTTTGCACGAAAATCTTTTCTTTGCCTT
326 ATTCTTCACATTAGGATAAAGGATAATGATGATTTTCTTTTGCATGAAAATCTTTTCTTTGCCTT
* * *
245472 TTTTACATTAAAATCAAAGTTTATCCCTTAAATAAGGCAAGCATCG--GCTCGTAACAGTCTCCA
391 ATTTACCTTAAAATCAAAGTTTATCCCTTAAATAAGGCAAGCATCGATTCTCGTAACAGTCTCCA
* *
245535 TTCTTTTCAAGATT-CAGAACC
456 TTCTTTTCAAGATTGGA-AAAC
* * * * *
245556 AAAAGA-ACATTCCCTTCATTA-CGAGACATGACATTGAGGCTTTGGTAACGCAAAA-AGAGCTT
1 AAAA-ACACATTCCTTTCATTAGCG-TACATGACATTGATGCTTTGGTGACGCAAAATA-CGCTT
* * * * * *
245618 TTCTTGCCACTGTTTTTGATAGAATTAAAGTTTATCTCTTAAATTAGAGAAACTAGAATAGTCAA
63 TTCCTACCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGAGAAACTAGAATAGTCAA
* * * * * *
245683 AGTAATCACTGTTCTTTTTAGGATTAGGCACCGTAAACGTAGTCTTCTCATAAGGATATACGATA
128 ACTAATCCCTGTTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATAAGGATACACGATA
* * * * * * ** * * *
245748 TTGACGCTTTGGTTTCGAAAGGAAGGCTTTTTTCCACCTAAAATTGGTAAAGTTTCACATCGTGC
193 TTGATGCTTTGGTTTTGAAAGAAAGGCTTTCTTCCCCCCAATTTTTGTAAAGTCTGACATCGTGC
*
245813 CTCAAACGAGACAAACATTGATTCCAGTAATGGCCTTCATTCATTTTGTAATTAGGCACAATAAA
258 CTCAAACGAGACAAACATTGATTCCAGTAATGGCCTTCATTCATTTTGTAATTAGGCACTATAAA
* * *
245878 CACGTTCTTCACATTAGGATAAAGGATAATGATGATTTTCTTTTGCAAGGAAATCTTTTCTTTGC
323 CACATTCTTCACATTAGGATAAAGGATAATGATGATTTTCTTTTGCATGAAAATCTTTTCTTTGC
* *
245943 CTTATTTACCTTAAAATCAAAGTTTATCCCTTAAATAAGGTAAGCATCGATTCTCCTAACAGTCT
388 CTTATTTACCTTAAAATCAAAGTTTATCCCTTAAATAAGGCAAGCATCGATTCTCGTAACAGTCT
* *
246008 CCATTCTTTTCAAGATTTGAAACC
453 CCATTCTTTTCAAGATTGGAAAAC
* * * * * *
246032 AAAAGCACATTCCCTACATTAG-GATACATGACATTGACGCTTTGGTTACGC-AAATAGAGCTTT
1 AAAAACACATTCCTTTCATTAGCG-TACATGACATTGATGCTTTGGTGACGCAAAATA-CGCTTT
* * * * * *
246095 TCTTACCACCGTTTTTTATTGAGTCAAAG-TT-TCTCTTAAATTAGAAAAACTAGAATAGTCAAA
64 TCCTACCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGAGAAACTAGAATAGTCAAA
* * ** * ** *
246158 CTAATCACTGTTCTTTTTAGGATTAGGCACCATAAACGCAGTCCTCTCGGAAGGATATACGATAT
129 CTAATCCCTGTTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATAAGGATACACGATAT
** * * * * * *
246223 TGACACTTTGGTTTCGAAAGAAAGGCTTTTTTCCACCTAAATTTTGTAAAGTTTGACATCGTGCC
194 TGATGCTTTGGTTTTGAAAGAAAGGCTTTCTTCCCCCCAATTTTTGTAAAGTCTGACATCGTGCC
* * * * *
246288 TCAAACGAGGCAAGCATTGATTCCAGTAATGGCCTTCATTCATTTTGTAATTAGGCACAAGAAGC
259 TCAAACGAGACAAACATTGATTCCAGTAATGGCCTTCATTCATTTTGTAATTAGGCACTATAAAC
* * *
246353 ACATTCTTCACGTTAGGATAAAGGATAATGATGATTTTCTTTTGCAAGGAAATCTTTTCTTTGCC
324 ACATTCTTCACATTAGGATAAAGGATAATGATGATTTTCTTTTGCATGAAAATCTTTTCTTTGCC
* *
246418 TTATTTACCTTAAAATCAAAGTTTATCCCTTAAATAAGGTAAGCATCGATTCTTGTAACAGTCTC
389 TTATTTACCTTAAAATCAAAGTTTATCCCTTAAATAAGGCAAGCATCGATTCTCGTAACAGTCTC
*
246483 CATTCTTTTCAAGATTCGG-AACC
454 CATTCTTTTCAAGATT-GGAAAAC
* * * *
246506 AAAAGCACATTCCCTTCATTAG-GATACATGACATTGATGCTTTGGTGACAC-AAATAGAGCTTT
1 AAAAACACATTCCTTTCATTAGCG-TACATGACATTGATGCTTTGGTGACGCAAAATA-CGCTTT
* * * * * *
246569 TCTTACCA-TGATTTTTCATTGAGTCAAAGTTTGTCTCTTAAATTAA-AAAAACTAGAATAGTCA
64 TCCTACCACCG-TTTTTGATAGAATCAAAGTTTGTCTCTTAAA-TAAGAGAAACTAGAATAGTCA
* * * * * * *
246632 AACTAATCACTATTGTTTTTAGGATTAGGGACCATAAAACACAGTCTTCTCATATGGATACACGA
127 AACTAATCCCTGTTCTTTTCAGGATTAGGCACCAT-AAACATAGTCTTCTCATAAGGATACACGA
* * * * * *
246697 TATTGACGATTTGGTTTTGAAAGAAAGGCTTT-TCTCCACCTAAATTTTGTAAAGTTTGACATCG
191 TATTGATGCTTTGGTTTTGAAAGAAAGGCTTTCT-TCCCCCCAATTTTTGTAAAGTCTGACATCG
* *
246761 TGCCTCAAACGAGACAAACTTTGATTCCAGTAATGGCCTTTATTCATTTTGTAATTAGGCACTAT
255 TGCCTCAAACGAGACAAACATTGATTCCAGTAATGGCCTTCATTCATTTTGTAATTAGGCACTAT
*
246826 GAACACATTCTTCACATTAGGATAAAGGATAATGATGATTTTCTTTTGCATGAAAATCTTTTTTT
320 AAACACATTCTTCACATTAGGATAAAGGATAATGATGATTTTCTTTTGCATGAAAATC----TTT
* * * * * * *
246891 TTTTTACCTTATTTACCTTAATATCAAAGTTTATCGCTTAATTAAGGCAAGAATCGATTCTCGTC
381 TCTTTGCCTTATTTACCTTAAAATCAAAGTTTATCCCTTAAATAAGGCAAGCATCGATTCTCGTA
* * *
246956 ACTGTCTCCACTATTTTCAAGATTGGAAAAC
446 ACAGTCTCCATTCTTTTCAAGATTGGAAAAC
* * * * * *
246987 AAAAACACATTCCTTTTATTGGTGTACATGACATTGATGCTTTCGAGAACGCAAAATACACTTTT
1 AAAAACACATTCCTTTCATTAGCGTACATGACATTGATGCTTTGGTG-ACGCAAAATACGCTTTT
* * * * *
247052 CCTACTACCGTTTTTGATAGAATCAAAGTTTGTCTCCTAAATTAGAGAAACTAAAACAGTCAAAC
65 CCTACCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGAGAAACTAGAATAGTCAAAC
* * * *
247117 TAATCCCTATTCTTTTTAGGATTAGGCACCATAAACGTAGTCTTCTCATAAGGATACGCGATATT
130 TAATCCCTGTTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATAAGGATACACGATATT
* * *
247182 GACGCTTTGGTTTTGAAAGAAAGG-TCTTCTTCCACCTAATTTTTGTAAAGT-TAGACATCGTGC
195 GATGCTTTGGTTTTGAAAGAAAGGCT-TTCTTCCCCCCAATTTTTGTAAAGTCT-GACATCGTGC
*
247245 CTCAAACGAGACAAACATTGATTCCAGTAATGGCCTTCATTCATTTTCTAATTAGGCACTATAAA
258 CTCAAACGAGACAAACATTGATTCCAGTAATGGCCTTCATTCATTTTGTAATTAGGCACTATAAA
* * *
247310 CAAATTCTTCACATTAGGATAAAGGATAACGATGATTTTCTTTTGCAAT-AAAATCTTTTCCTTG
323 CACATTCTTCACATTAGGATAAAGGATAATGATGATTTTCTTTTGC-ATGAAAATCTTTTCTTTG
* * *
247374 CCGTATTTACCTTAAAATCAAAGTTTATCCCTTAAATAAGGCAAGCACCGATTCTCGTAATAGTC
387 CCTTATTTACCTTAAAATCAAAGTTTATCCCTTAAATAAGGCAAGCATCGATTCTCGTAACAGTC
* * *
247439 TCCATTCTTTTCATGATT-CAGAACC
452 TCCATTCTTTTCAAGATTGGA-AAAC
* * * * * * *
247464 AAAAGCACATTGCC-TTCATTAAG-ATACATAACGTTGCA-ACTTCGGTGACGCAAACAGA-GCT
1 AAAAACACATT-CCTTTCATT-AGCGTACATGACATTG-ATGCTTTGGTGACGCAAA-ATACGCT
* * * *
247525 TTTCTTACCACCGTTTTTCATTA-AATCAAAGTTTGTCTCTTAAATTAGAAAAACTAGAATAGTC
62 TTTCCTACCACCGTTTTTGA-TAGAATCAAAGTTTGTCTCTTAAATAAGAGAAACTAGAATAGTC
* * * *** * * * *
247589 AAACTAATCACTGTTCTTTTCAAGATTAGGCATCATAAATGCACTCTTCTCAAAAGGATATACAA
126 AAACTAATCCCTGTTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATAAGGATACACGA
* * * * * * * * * *
247654 TATTGACGCTTTGGTTTTTAAAGAAAAGCTTTTTTCCACCTAAATTTTGTAAAGTTTGACAGCAT
191 TATTGATGCTTTGGTTTTGAAAGAAAGGCTTTCTTCCCCCCAATTTTTGTAAAGTCTGACATCGT
*
247719 GCCTCAAACGAGACAAACATTGATTCCAGTAATGGCCTTCATTCATTTTGTAATTAGGCACCATA
256 GCCTCAAACGAGACAAACATTGATTCCAGTAATGGCCTTCATTCATTTTGTAATTAGGCACTATA
* * *
247784 AACACATTCTTCACATTAGGATAAAGGATAACGATGATTTTCTTTTCCATGAAAATCTTTTCATT
321 AACACATTCTTCACATTAGGATAAAGGATAATGATGATTTTCTTTTGCATGAAAATCTTTTCTTT
* * * * *
247849 GCCTTATTTACCTTAAAATCAAACTTTATCCCTTAATTAAGGTAAGAATCGATTCTCGTAATAGT
386 GCCTTATTTACCTTAAAATCAAAGTTTATCCCTTAAATAAGGCAAGCATCGATTCTCGTAACAGT
* *
247914 CTCCACTCTTGTCAAGATTGGAAAAC
451 CTCCATTCTTTTCAAGATTGGAAAAC
* * * * *
247940 AAATACACAATCCTTTTATTAGCGTACATGACATTGATGCTTTGGGGACGCAAAATACGTTTTTC
1 AAAAACACATTCCTTTCATTAGCGTACATGACATTGATGCTTTGGTGACGCAAAATACGCTTTTC
* * * *
248005 CTACTACCGCTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGATAAATTAGAATAGTCAAACT
66 CTACCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGAGAAACTAGAATAGTCAAACT
* * * * *
248070 AACCCCTGTTCTGTTCAGGACTAGGCACTATAAACATAGTCTTCTTATAAGGATACACGATATTG
131 AATCCCTGTTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATAAGGATACACGATATTG
* * *
248135 ATGCTTTGATTTTGAAAGAAAGGCTTTCTTCCCCCCAATTTTTATAAACGTCTAACATCGTGCCT
196 ATGCTTTGGTTTTGAAAGAAAGGCTTTCTTCCCCCCAATTTTTGTAAA-GTCTGACATCGTGCCT
* ** ** * * * * *
248200 CGAATAAGACAAACATTGATTCTGGAAATGGCCTTCGTTCAATTGGTAATAAGGCACTATAAACA
260 CAAACGAGACAAACATTGATTCCAGTAATGGCCTTCATTCATTTTGTAATTAGGCACTATAAACA
* * * * * *
248265 CATTCTTCACATCAGGATAAAGGACAATGATGATTTTCTTTTACTTGGAAATCTTTTCTATGCCT
325 CATTCTTCACATTAGGATAAAGGATAATGATGATTTTCTTTTGCATGAAAATCTTTTCTTTGCCT
* * * * ** * *
248330 TATTTACGTTAAAGTCAAAGCTTATCCCATAAATAAGATAAGCATCGATTCTCATAATAGTCTCC
390 TATTTACCTTAAAATCAAAGTTTATCCCTTAAATAAGGCAAGCATCGATTCTCGTAACAGTCTCC
*
248395 ATTCTTTTCAAGATTGGGAAAC
455 ATTCTTTTCAAGATTGGAAAAC
* * * * * * * *
248417 AAAAACACATTTCTTCCTTTAGCATCCCTAACATTGATGCTTTGGTGACGCAAAATATGCTTTTC
1 AAAAACACATTCCTTTCATTAGCGTACATGACATTGATGCTTTGGTGACGCAAAATACGCTTTTC
* * * *
248482 CTACCATCATTTTTGATAGAATCAAAGTTTATCTCTTAAATAAGAGAAACTAAAATAGTCAAACT
66 CTACCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGAGAAACTAGAATAGTCAAACT
* * *
248547 AATCTCTCTTCTTTTCAGGATTAGGCACCATAAACATAGGCTTCTCATAAGGATACACGATATTG
131 AATCCCTGTTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATAAGGATACACGATATTG
* * * * * **
248612 ATGCTTTGGTTTTTGAAA-AAAGGCTTTTTTCTCGCCAATTTTTATAAAGTCAGAC-TTTTGCCT
196 ATGCTTTGG-TTTTGAAAGAAAGGCTTTCTTCCCCCCAATTTTTGTAAAGTCTGACATCGTGCCT
* * * *
248675 CAGACAAGACAAATATTGATTCTAGTAATGGCCTTCATTCATTTTGTAATTAGGCACTATAAACA
260 CAAACGAGACAAACATTGATTCCAGTAATGGCCTTCATTCATTTTGTAATTAGGCACTATAAACA
* * * *
248740 CATTCTTCACATTAGGATAAAGGATAATGATGATTTTTTTTTACATGAAAATCTTTTCTATGCCA
325 CATTCTTCACATTAGGATAAAGGATAATGATGATTTTCTTTTGCATGAAAATCTTTTCTTTGCCT
* * * * * *
248805 TATTTACTTTAAAATCAAAGCTTATCCCTTAAATACGACAAGCATCGATTCTCATAATAGTCTCC
390 TATTTACCTTAAAATCAAAGTTTATCCCTTAAATAAGGCAAGCATCGATTCTCGTAACAGTCTCC
*
248870 ATTCTTTTCAAGATTGGGAAAC
455 ATTCTTTTCAAGATTGGAAAAC
** * *
248892 AAAAACACATTCCTTTCATTAGCG-GGA-GACATTGATGCTTTGGTGGCGCAAAATACGCTTTCC
1 AAAAACACATTCCTTTCATTAGCGTACATGACATTGATGCTTTGGTGACGCAAAATACGCTTTTC
* ** * * * *
248955 CTACCATCAATTTTGATAGAATAAAAGTCTATCTCTTAAATAAGAGAAACTAAAATAGTCAAACT
66 CTACCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGAGAAACTAGAATAGTCAAACT
* * * *
249020 AATCCCTATTTTTTTCAGGATTAGGCACCATAAACGTAGGCTTCTCATAAGGATACACGATATTG
131 AATCCCTGTTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATAAGGATACACGATATTG
* * ** *
249085 ATGCTTTGGTTTTTGAAAGAAAGGCTTTCTTCTCGCCAA-TTTTGTTAAAGTCCTGAC-TTTTAC
196 ATGCTTTGG-TTTTGAAAGAAAGGCTTTCTTCCCCCCAATTTTTG-TAAAGT-CTGACATCGTGC
* *
249148 CTCAAACGAGACAAATATTGATTCTAGTAATGGCCTTCATTCATTTTGTAATTAGGCACTATAAA
258 CTCAAACGAGACAAACATTGATTCCAGTAATGGCCTTCATTCATTTTGTAATTAGGCACTATAAA
*
249213 CACATTCTTCACATTAGGATAAAGGATAACGATGATTTTCTTTTGCATGAAAATCTTTTCTTTGC
323 CACATTCTTCACATTAGGATAAAGGATAATGATGATTTTCTTTTGCATGAAAATCTTTTCTTTGC
*
249278 CTTATTTACATTAAAATCAAAGTTTATCCCTTAAATAAGGCAAGCATCGA--CTCGTAACAGTCT
388 CTTATTTACCTTAAAATCAAAGTTTATCCCTTAAATAAGGCAAGCATCGATTCTCGTAACAGTCT
* * *
249341 CCATACTTTTCAAGATT-CAGAACC
453 CCATTCTTTTCAAGATTGGA-AAAC
* * * * * *
249365 AAAAGCACATTCCCTTCATTAG-GAGACATGACATTGATGCTTTGGTAATGCAAAA-AGAGCTTT
1 AAAAACACATTCCTTTCATTAGCG-TACATGACATTGATGCTTTGGTGACGCAAAATA-CGCTTT
* * * * *
249428 TCTTGCCACAGTTTTTGATAGAATCAAAGTTTGTCTATTAAATTAGAGAAACTAGAATAGTCAAA
64 TCCTACCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGAGAAACTAGAATAGTCAAA
* * * * *
249493 CTAATCACTGTTCTTTTTCAGGATTAGGCACTATAAACGCT-GTCTTCTCATAAGGATATACAAT
129 CTAATCCCTGTTC-TTTTCAGGATTAGGCACCATAAAC-ATAGTCTTCTCATAAGGATACACGAT
* * * * * * *
249557 ATTGACGC-TTGGTTTTGAAAGAAAAGCTTTTTTCCACCTAAATTTTGTAAAGTTTGACATCGTG
192 ATTGATGCTTTGGTTTTGAAAGAAAGGCTTTCTTCCCCCCAATTTTTGTAAAGTCTGACATCGTG
* * * *
249621 CCTCAAACGAGACAAATATTGATTCCAGTAATAGCCTTCATTCACTTTGTAACTAGGCAAC-ATA
257 CCTCAAACGAGACAAACATTGATTCCAGTAATGGCCTTCATTCATTTTGTAATTAGGC-ACTATA
* * * *
249685 AACATATTCTTCACATTAGGGATAAAGGATAATGAAGATTTTCGTTTGTATGAAAATCTTTTCTT
321 AACACATTCTTCACATTA-GGATAAAGGATAATGATGATTTTCTTTTGCATGAAAATCTTTTCTT
* * * * * *
249750 TGCCTTATTTACGTTAAAATCAAAGTCTATCCCTTAATTAAGGCAAGAATCGATTCTCTTAATAG
385 TGCCTTATTTACCTTAAAATCAAAGTTTATCCCTTAAATAAGGCAAGCATCGATTCTCGTAACAG
* *
249815 TCTCGACTCTTTTCAAGATTGGAAAAC
450 TCTCCATTCTTTTCAAGATTGGAAAAC
* * * * * * *
249842 AAAAACACATTACTTTTATTAGCATATATGACATTGATGCTTTGGGGACGTAAAATACGTTTTTC
1 AAAAACACATTCCTTTCATTAGCGTACATGACATTGATGCTTTGGTGACGCAAAATACGCTTTTC
* * * * *
249907 CTACAACCAGTTTTTGATAGAATCAAAGTTTGTGTATTAAATAAGATAAATTAGAATAGTCAAAC
66 CTACCACC-GTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGAGAAACTAGAATAGTCAAAC
* * * * *
249972 TAATCCTTATTCTGTTCAGGACTAGGCACTATAAACATAGTCTTCTCATAAGGATACACGATATT
130 TAATCCCTGTTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATAAGGATACACGATATT
* * * *
250037 GACGCTTTGATTTTGAAAGAAAGGCTTTCTT-CCCCCAATTTTTATAAAGTCTAACATCGTGCCT
195 GATGCTTTGGTTTTGAAAGAAAGGCTTTCTTCCCCCCAATTTTTGTAAAGTCTGACATCGTGCCT
* * * * *
250101 CAAATGAGACAAACATTAATT-CAGGAAACGGCCTTCATTCAATTTGTAATTAGGCACTATAAAC
260 CAAACGAGACAAACATTGATTCCA-GTAATGGCCTTCATTCATTTTGTAATTAGGCACTATAAAC
* * * * * **
250165 ACATTCTTCACATCAGGATAAAGGATACTGATGATTTTCTTTTACAAGGAAATCTTTTCTACGCC
324 ACATTCTTCACATTAGGATAAAGGATAATGATGATTTTCTTTTGCATGAAAATCTTTTCTTTGCC
* * * * *
250230 TTATTTACTTTAAAATCAAAGCTTATCCCTTAAATAAGACAAGCATCGATTCTCATAATAGTCTC
389 TTATTTACCTTAAAATCAAAGTTTATCCCTTAAATAAGGCAAGCATCGATTCTCGTAACAGTCTC
*
250295 CATTCTTTTCAAGATTGGGAAAC
454 CATTCTTTTCAAGATTGGAAAAC
* * * *
250318 AAACACACATTCCTTTCATTAGCGTCCCTGACATTGAAGCTTTGGTGACGCAAAATACGCTTTTC
1 AAAAACACATTCCTTTCATTAGCGTACATGACATTGATGCTTTGGTGACGCAAAATACGCTTTTC
* * * * * * *
250383 CTTCCATCATTTTTTATAGAATTAAAGTTTATCTCTTAAATAAGAGAAACTAAAATAGTCAAACT
66 CTACCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGAGAAACTAGAATAGTCAAACT
*
250448 AATCCCTGTTCTTTTCAGGATTAGGCACCATAAACATAGGCTTCTCATAAGGATACACGATATTG
131 AATCCCTGTTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATAAGGATACACGATATTG
* *** * ** *
250513 ATGCTTTGGTTTTTGAAAGAAAGGCTTTCTTTCCGGGAATTTTTATAAAGTCTGAC-TTTTGCAT
196 ATGCTTTGG-TTTTGAAAGAAAGGCTTTCTTCCCCCCAATTTTTGTAAAGTCTGACATCGTGCCT
* *
250577 CAAACGAGACAAATATTGATTCTAGTAATGGCCTTCATTCATTTTGTAATTAGGCACTAT--A-A
260 CAAACGAGACAAACATTGATTCCAGTAATGGCCTTCATTCATTTTGTAATTAGGCACTATAAACA
* **
250639 -A-----CACATTAGGATAAAGGATAACGATGATTTTCTTTTGCACAAAAATCTTTTCTTTGCCT
325 CATTCTTCACATTAGGATAAAGGATAATGATGATTTTCTTTTGCATGAAAATCTTTTCTTTGCCT
* *
250698 T-TTCTACATTAAAATCAAAGTTTATCCCTTAAATAAGGCAAGCATCG--GCTCGTAACAGTCTC
390 TATT-TACCTTAAAATCAAAGTTTATCCCTTAAATAAGGCAAGCATCGATTCTCGTAACAGTCTC
* *
250760 CATTCTTTTCAAGATT-CAGAACC
454 CATTCTTTTCAAGATTGGA-AAAC
* * ** * * * * *
250783 AAAAGCTCATTCCCCTCACTAG-GAGACATGACATTAATGCTTTGGTAACGCAAAACGA-GCTTT
1 AAAAACACATTCCTTTCATTAGCG-TACATGACATTGATGCTTTGGTGACGCAAAA-TACGCTTT
* ** * * *
250846 T-CTGGCCACTATTTTTGATAGAATCACAGTTTGTCTCTTAAGTTAGAGAAACTAGAATAGTCAA
64 TCCT-ACCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGAGAAACTAGAATAGTCAA
* * * ** * *
250910 ACTAATCACTGTTCTTTTCAGGATTAGGAACTATAAACGCAGTCTTCTCGTAAGGATATACGATA
128 ACTAATCCCTGTTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATAAGGATACACGATA
* * * * * *
250975 TTGATGCTTTGGTTTTGAAAGAAAGGCTTTTTTCCACCTAAATTTTGTAAACTTTGACATCGTGC
193 TTGATGCTTTGGTTTTGAAAGAAAGGCTTTCTTCCCCCCAATTTTTGTAAAGTCTGACATCGTGC
* * * * * *
251040 CTCAAACAAGACAAATATTGATTCCAGTAATAGCCTTCATTCACTTTGTAACTAGGCACCATAAA
258 CTCAAACGAGACAAACATTGATTCCAGTAATGGCCTTCATTCATTTTGTAATTAGGCACTATAAA
* *
251105 CATATTCTTCACATTAGGATAAAGGATAATGATGATTTTCTTTTGCATGAAAAAACTTTTCTTTG
323 CACATTCTTCACATTAGGATAAAGGATAATGATGATTTTCTTTTGCATG-AAAATCTTTTCTTTG
* * * * *
251170 CGTTATTTACCTTAAAATCAAAGTTTATCCCTTAATTAAGGTAAGAATCGATTCTTGTAACAGTC
387 CCTTATTTACCTTAAAATCAAAGTTTATCCCTTAAATAAGGCAAGCATCGATTCTCGTAACAGTC
* *
251235 TCCATTCTTTTTAAGATTGGGAAAC
452 TCCATTCTTTTCAAGATTGGAAAAC
* * * *
251260 AAAAACACAGT-CTTTTATTAGCGTACATGACATTGATGCTTTCGTGACGCAAAATACACTTTTC
1 AAAAACACATTCCTTTCATTAGCGTACATGACATTGATGCTTTGGTGACGCAAAATACGCTTTTC
* * ** * * * *
251324 CTACCACCATTTTTAATAGAAAGAAAGTTTGTCACTTAAATAAGATAAATTAGGATAGTCAAACT
66 CTACCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGAGAAACTAGAATAGTCAAACT
* * * * * *
251389 AATCCATGTTCTTTTCAGGATTAGGCACCATGAACACATTCTTGTCATAAGGAAACACGATATTG
131 AATCCCTGTTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATAAGGATACACGATATTG
* * * * * * * * *
251454 ATGCTTTGGTTTTTAAAGAAATGCTTTCTTCTCGCCAATCTTCGTAATGTCTGACTTC-TGCCAC
196 ATGCTTTGGTTTTGAAAGAAAGGCTTTCTTCCCCCCAATTTTTGTAAAGTCTGACATCGTGCCTC
* * * *
251518 AAACGAGACAAACATTGATTCTAGTAATGGCCTTCATTCATGTTGTAATTTGGTACTATAAACAC
261 AAACGAGACAAACATTGATTCCAGTAATGGCCTTCATTCATTTTGTAATTAGGCACTATAAACAC
* * * *
251583 ATTCTTCAAATCAGGATAAAGGATAATGATGATTTTCTTTTGCAAGAAAATCTTTTCTTTGCCAT
326 ATTCTTCACATTAGGATAAAGGATAATGATGATTTTCTTTTGCATGAAAATCTTTTCTTTGCCTT
* * *
251648 ATTTTCCTTAAAAGCAAAGTTTATCCCTCAAATAAGGCAAGCATCGATTCTCGTAACAGTCTCCA
391 ATTTACCTTAAAATCAAAGTTTATCCCTTAAATAAGGCAAGCATCGATTCTCGTAACAGTCTCCA
* * *
251713 TTCTTGTCAAGATT-CAGAACC
456 TTCTTTTCAAGATTGGA-AAAC
* * ** * * * * *
251734 AAAAGCACATTCCTTTCAATAAG-AAACATAACATTGCA-GCATTGGTGATG-AAAACAGAGCTT
1 AAAAACACATTCCTTTC-ATTAGCGTACATGACATTG-ATGCTTTGGTGACGCAAAATA-CGCTT
* * * * *
251796 TTCTTACCACCGTTTTTCATTGAATCAAAGTTTGTCTCTTAAATTAGAAAAACTAGAATAGTCAA
63 TTCCTACCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGAGAAACTAGAATAGTCAA
* * * ** * * *
251861 ACTAATCACTGTTCTTTCCATGATTAGGCACCATAAACGCAGTCTTCGCATGAGGATATACGATA
128 ACTAATCCCTGTTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATAAGGATACACGATA
* * * * * * * * *
251926 TTAACGCTTTGGTTTTGAAAGAAAAGCTTTTTTCCTCCTAAATTTTGCAAAGTTTGACATCGTGC
193 TTGATGCTTTGGTTTTGAAAGAAAGGCTTTCTTCCCCCCAATTTTTGTAAAGTCTGACATCGTGC
*
251991 CT---------CAAACATTGATTCCAGTAATGGCCTTCATTCATTTTGTAATTAGGCACCATAAA
258 CTCAAACGAGACAAACATTGATTCCAGTAATGGCCTTCATTCATTTTGTAATTAGGCACTATAAA
*
252047 CACATTCTTCACATTAGGATAAAGGATAATGATGATTTTCGTTTGCATGAAAATCTTTTCTTTGC
323 CACATTCTTCACATTAGGATAAAGGATAATGATGATTTTCTTTTGCATGAAAATCTTTTCTTTGC
* * *
252112 CTTATTTACCTTAAAATCAAAGTTTATCCCTTAATTAAGGCAAGAATCGATTCTCGTAATAGTCT
388 CTTATTTACCTTAAAATCAAAGTTTATCCCTTAAATAAGGCAAGCATCGATTCTCGTAACAGTCT
* *
252177 CCACTCTTTTCAGGATTGGAAAAC
453 CCATTCTTTTCAAGATTGGAAAAC
* * * * **
252201 AAAAACACAATCCTTTTATTAGCGTACATGACATTGACGCTTTGGGGACGCAAAATACATTTTTC
1 AAAAACACATTCCTTTCATTAGCGTACATGACATTGATGCTTTGGTGACGCAAAATACGCTTTTC
* * * *
252266 CTACTACTGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGATAAATTAGAATAGTCAAACT
66 CTACCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGAGAAACTAGAATAGTCAAACT
* * *
252331 AATCCCTGTT-TTCTTCAGGACTAAGCACCATAAACATAATCTTCTCAT-AGAGATACACGATAT
131 AATCCCTGTTCTT-TTCAGGATTAGGCACCATAAACATAGTCTTCTCATAAG-GATACACGATAT
* * * *
252394 TGATACTTTGATTTTGAAAGAAAGGCTTTCTTCCCCCCAATTTTTATAAAGTCTAACATCGTGCC
194 TGATGCTTTGGTTTTGAAAGAAAGGCTTTCTTCCCCCCAATTTTTGTAAAGTCTGACATCGTGCC
* * ** * *
252459 TCAAATGAGACAAACACTGATTCTGGAAATGGCCTTCATTCAATTTGTAATTAGGCACTATAAAC
259 TCAAACGAGACAAACATTGATTCCAGTAATGGCCTTCATTCATTTTGTAATTAGGCACTATAAAC
* ** *
252524 ACATTCTTCACATTAGGATAAAGGATAACGATGATTTTCTTTTGCATGAAAATCGCTTCTTTCCC
324 ACATTCTTCACATTAGGATAAAGGATAATGATGATTTTCTTTTGCATGAAAATCTTTTCTTTGCC
* * * *
252589 TTGTTTACATTAAAATCAAAGTTTATCCCTTAAATAAGGCAAGCATCG--GCTCATAACAGTCTC
389 TTATTTACCTTAAAATCAAAGTTTATCCCTTAAATAAGGCAAGCATCGATTCTCGTAACAGTCTC
* * *
252652 TATTCTTTTCAAGATT-TAGAACC
454 CATTCTTTTCAAGATTGGA-AAAC
* * * * *
252675 AAAAGCACATTCCCTTCATTAG-GATACATGACACTGATGCTTTGGTAACGCAAAA-AGAGCTTT
1 AAAAACACATTCCTTTCATTAGCG-TACATGACATTGATGCTTTGGTGACGCAAAATA-CGCTTT
* * * * * *
252738 TCTTCCCACTGTTTTTGATAGAATCAACA-TTTATCTCTTAAATTAGAGAAACTAGAATAGTTAA
64 TCCTACCACCGTTTTTGATAGAATCAA-AGTTTGTCTCTTAAATAAGAGAAACTAGAATAGTCAA
* * *
252802 ACTAATCACTGTTCTTTTCAAGATTAGGCACCATAAACATAGGCTTCTCATAAGGATACACGATA
128 ACTAATCCCTGTTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATAAGGATACACGATA
* * * * * **
252867 TTGATGCTTTGGTTTTTGAAA-AAAGGCTTTTTTCTCGCCAATTTTTATAAAGTCAGAC-TTTTG
193 TTGATGCTTTGG-TTTTGAAAGAAAGGCTTTCTTCCCCCCAATTTTTGTAAAGTCTGACATCGTG
* * * *
252930 CCTCAGACGAGACAAATATTGATTCTAGTAATGGCTTTCATTCATTTTGTAATTAGGCACTATAA
257 CCTCAAACGAGACAAACATTGATTCCAGTAATGGCCTTCATTCATTTTGTAATTAGGCACTATAA
* * *
252995 ACACATTCTTCACATTAGGATAAAGGATAATGATGATTTTTTTTTACATGAAAATCTTTTCTATG
322 ACACATTCTTCACATTAGGATAAAGGATAATGATGATTTTCTTTTGCATGAAAATCTTTTCTTTG
* * * * * * *
253060 CCATATTTACTTTAAAATCAAAGCTTATCCCTTAAATACGACAAGCATCGATTCTCATAATAGTC
387 CCTTATTTACCTTAAAATCAAAGTTTATCCCTTAAATAAGGCAAGCATCGATTCTCGTAACAGTC
*
253125 TCCATTCTTTTCAAGATTGGGAAAC
452 TCCATTCTTTTCAAGATTGGAAAAC
* * * *
253150 AAAAACACATTCCTTTCATTAGCGTCCCTGACATTGATGCTTTGGTGATGCAAAATACGCTTTCC
1 AAAAACACATTCCTTTCATTAGCGTACATGACATTGATGCTTTGGTGACGCAAAATACGCTTTTC
* ** * * * *
253215 CTACCATCAATTTTGATAGAATAAAAGTCTATCTCTTAAATAAGAGAAACTAAAATAGTCAAACT
66 CTACCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGAGAAACTAGAATAGTCAAACT
* * * *
253280 AATCCCTATTTTTTTCAGGATTAGGCACCATAAACGTAGGCTTCTCATAAGGATACACGATATTG
131 AATCCCTGTTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATAAGGATACACGATATTG
* * * ** *
253345 ATGCTTTGGTTTTTGAAAGAAAGGCTTTCTTCTCGCCAA-TTTTGTTAAAGTCCGAC-TTTTACC
196 ATGCTTTGG-TTTTGAAAGAAAGGCTTTCTTCCCCCCAATTTTTG-TAAAGTCTGACATCGTGCC
* *
253408 TCAAACGAGACAAATATTGATTCTAGTAATGGCCTTCATTCATTTTGTAATTAGGCACTATAAAC
259 TCAAACGAGACAAACATTGATTCCAGTAATGGCCTTCATTCATTTTGTAATTAGGCACTATAAAC
*
253473 ACATTCTTCACATTAGGATAAAGGATAACGATGATTTTCTTTTGCATGAAAATCTTTTCTTTGCC
324 ACATTCTTCACATTAGGATAAAGGATAATGATGATTTTCTTTTGCATGAAAATCTTTTCTTTGCC
*
253538 TTATTTACATTAAAATCAAAGTTTATCCCTTAAATAAGGCAAGCATCGA--CTCGTAACAGTCTC
389 TTATTTACCTTAAAATCAAAGTTTATCCCTTAAATAAGGCAAGCATCGATTCTCGTAACAGTCTC
* * *
253601 CATACTTTTCAAGATT-CAGAACC
454 CATTCTTTTCAAGATTGGA-AAAC
* * * * * *
253624 AAAAGCACATTCCCTTCATTAG-GAGACATGACATTGATGCTTTGGTAATGCAAAA-AGAGCTTT
1 AAAAACACATTCCTTTCATTAGCG-TACATGACATTGATGCTTTGGTGACGCAAAATA-CGCTTT
* * * * * *
253687 TCTTGCCACAGTTTTTGATAGAAACAAAGTTTGTCTATTAAATTAGAGAAACTAGAATAGTCAAA
64 TCCTACCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGAGAAACTAGAATAGTCAAA
* * * *
253752 CTAATCACTGTTCTTTTTC-GGATTAGGCACTATAAACGCT-GTCTTCTCATAAGGATATACGAT
129 CTAATCCCTGTTC-TTTTCAGGATTAGGCACCATAAAC-ATAGTCTTCTCATAAGGATACACGAT
* * * * * * *
253815 ATTGACGC-TTGGTTTTGAAAGAAAAGCTTTTTTCCACCTAAATTTTGTAAAGTTTGACATCGTG
192 ATTGATGCTTTGGTTTTGAAAGAAAGGCTTTCTTCCCCCCAATTTTTGTAAAGTCTGACATCGTG
* * * *
253879 CCTCAAACGAGACAAATATTGATTCCAGTAATAGCCTTCATTCACTTTGTAACTAGGCAAC-ATA
257 CCTCAAACGAGACAAACATTGATTCCAGTAATGGCCTTCATTCATTTTGTAATTAGGC-ACTATA
* * * * *
253943 AACATATTCTTCACATTAGGGTAAAGGATAATGAAGATTTTCGTTTGTATGAAAATCTTTTCTTT
321 AACACATTCTTCACATTAGGATAAAGGATAATGATGATTTTCTTTTGCATGAAAATCTTTTCTTT
* * * * * *
254008 GCCTTATTTACGTTAAAATCAAAGTCTATCCCTTAATTAAGGCAAGAATCGATTCTCTTAATAGT
386 GCCTTATTTACCTTAAAATCAAAGTTTATCCCTTAAATAAGGCAAGCATCGATTCTCGTAACAGT
* *
254073 CTCGACTCTTTTCAAGATTGGAAAAC
451 CTCCATTCTTTTCAAGATTGGAAAAC
* * * * * * *
254099 AAAAACACATTACTTTTATTAGCATATATGACATTGATGCTTTGGGGACGTAAAATACGTTTTTC
1 AAAAACACATTCCTTTCATTAGCGTACATGACATTGATGCTTTGGTGACGCAAAATACGCTTTTC
* * * * *
254164 CTACAACCGTTTTTGATAGAATCAAAGTTTGTGTATTAAATAAGATAAATTAGAATAGTCAAACT
66 CTACCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGAGAAACTAGAATAGTCAAACT
* * * *
254229 AATCCCTATTCTGTTCAGGACTAGGCACTATAAACATAGTCTTCTCATAAGGATACACGATATTG
131 AATCCCTGTTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATAAGGATACACGATATTG
* * * *
254294 ACGCTTTGATTTTGAAAGAAAGGCTTTCTT-CCCCCAATTTTTATAAAGTCTAACATCGTGCCTC
196 ATGCTTTGGTTTTGAAAGAAAGGCTTTCTTCCCCCCAATTTTTGTAAAGTCTGACATCGTGCCTC
* * ** * *
254358 AAATGAGACAAACATTAATTCTGGAAATGGCCTTCATTCAATTTGTAATTAGGCACTATAAACAC
261 AAACGAGACAAACATTGATTCCAGTAATGGCCTTCATTCATTTTGTAATTAGGCACTATAAACAC
* * * * * **
254423 ATTCTTCACATCAGGATAAAGGATACTGATGATTTTCTTTTACAAGGAAATCTTTTCTACGCCTT
326 ATTCTTCACATTAGGATAAAGGATAATGATGATTTTCTTTTGCATGAAAATCTTTTCTTTGCCTT
* * * * *
254488 ATTTACTTTAAAATCAAAGCTTATCCCTTAAATAAGACAAGCATCGATTCTCATAATAGTCTCCA
391 ATTTACCTTAAAATCAAAGTTTATCCCTTAAATAAGGCAAGCATCGATTCTCGTAACAGTCTCCA
*
254553 TTCTTTTCAAGATTGGGAAAC
456 TTCTTTTCAAGATTGGAAAAC
* * * *
254574 AAACACACATTCCTTTCATTAGCGTCCCTGACATTGAAGCTTTGGTGACGCAAAATACGCTTTTC
1 AAAAACACATTCCTTTCATTAGCGTACATGACATTGATGCTTTGGTGACGCAAAATACGCTTTTC
* * * * * * *
254639 CTTCCATCATTTTTTATAGAATTAAAGTTTATCTCTTAAATAAGAGAAACTAAAATAGTCAAACT
66 CTACCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGAGAAACTAGAATAGTCAAACT
*
254704 AATCCCTGTTCTTTTCAGGATTAGGCACCATAAACATAGGCTTCTCATAAGGATACACGATATTG
131 AATCCCTGTTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATAAGGATACACGATATTG
* *** * ** *
254769 ATGCTTTGGTTTTTGAAAGAAAGGCTTTCTTTCCGGGAATTTTTATAAAGTCTGAC-TTTTGCAT
196 ATGCTTTGG-TTTTGAAAGAAAGGCTTTCTTCCCCCCAATTTTTGTAAAGTCTGACATCGTGCCT
* *
254833 CAAACGAGACAAATATTGATTCTAGTAATGGCCTTCATTCATTTTGTAATTAGGCACTAT--A-A
260 CAAACGAGACAAACATTGATTCCAGTAATGGCCTTCATTCATTTTGTAATTAGGCACTATAAACA
* **
254895 -A-----CACATTAGGATAAAGGATAACGATGATTTTCTTTTGCACAAAAATCTTTTCTTTGCCT
325 CATTCTTCACATTAGGATAAAGGATAATGATGATTTTCTTTTGCATGAAAATCTTTTCTTTGCCT
* *
254954 T-TTCTACATTAAAATCAAAGTTTATCCCTTAAATAAGGCAAGCATCG--GCTCGTAACAGTCTC
390 TATT-TACCTTAAAATCAAAGTTTATCCCTTAAATAAGGCAAGCATCGATTCTCGTAACAGTCTC
* *
255016 CATTCTTTTCAAGATT-CAGAACC
454 CATTCTTTTCAAGATTGGA-AAAC
* * ** * * * *
255039 AAAAGCTCATTCCCCTCACTAG-GAGACATGACATTGATGCTTTGGTAACGCAAAACGA-GCTTT
1 AAAAACACATTCCTTTCATTAGCG-TACATGACATTGATGCTTTGGTGACGCAAAA-TACGCTTT
* ** * * *
255102 T-CTGGCCACTATTTTTGATAGAATCACAGTTTGTCTCTTAAGTTAGAGAAACTAGAATAGTCAA
64 TCCT-ACCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGAGAAACTAGAATAGTCAA
* * * ** * *
255166 ACTAATCACTGTTCTTTTCAGGATTAGGAACTATAAACGCAGTCTTCTCGTAAGGATATACGATA
128 ACTAATCCCTGTTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATAAGGATACACGATA
* * * * * *
255231 TTGATGCTTTGGTTTTGAAAGAAAGGCTTTTTTCCACCTAAATTTTGTAAACTTTGACATCGTGC
193 TTGATGCTTTGGTTTTGAAAGAAAGGCTTTCTTCCCCCCAATTTTTGTAAAGTCTGACATCGTGC
* * * * * *
255296 CTCAAACAAGACAAATATTGATTCCAGTAATAGCCTTCATTCACTTTGTAACTAGGCACCATAAA
258 CTCAAACGAGACAAACATTGATTCCAGTAATGGCCTTCATTCATTTTGTAATTAGGCACTATAAA
* *
255361 CATATTCTTCACATTAGGATAAAGGATAATGATGATTTTCTTTTGCATGAAAAAACTTTTCTTTG
323 CACATTCTTCACATTAGGATAAAGGATAATGATGATTTTCTTTTGCATG-AAAATCTTTTCTTTG
* * * * *
255426 CGTTATTTACCTTAAAATCAAAGTTTATCCCTTAATTAAGGTAAGAATCGATTCTTGTAACAGTC
387 CCTTATTTACCTTAAAATCAAAGTTTATCCCTTAAATAAGGCAAGCATCGATTCTCGTAACAGTC
* *
255491 TCCATTCTTTTTAAGATTGGGAAAC
452 TCCATTCTTTTCAAGATTGGAAAAC
* * * * *
255516 AAAAACACAGTCTTTTTATTAGCGTACATGACATTGATGCTTTCGTGACGCAAAATACACTTTTC
1 AAAAACACATTCCTTTCATTAGCGTACATGACATTGATGCTTTGGTGACGCAAAATACGCTTTTC
* * ** * * * *
255581 CTACCACCATTTTTAATAGAAAGAAAGTTTGTCACTTAAATAAGATAAATTAGGATAGTCAAACT
66 CTACCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGAGAAACTAGAATAGTCAAACT
* * * * * *
255646 AATCCATGTTCTTTTCAGGATTAGGCACCATGAACACATTCTTGTCATAAGGAAACACGATATTG
131 AATCCCTGTTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATAAGGATACACGATATTG
* * * * * * * *
255711 ATGCTTTGGTTTTTAAAGAAAGGCTTTCTTCTCGCCAATCTTCGTAATGTCTGACTTC-TGCCAC
196 ATGCTTTGGTTTTGAAAGAAAGGCTTTCTTCCCCCCAATTTTTGTAAAGTCTGACATCGTGCCTC
* * * *
255775 AAACGAGACAAACATTGATTCTAGTAATGGCCTTCATTCATGTTGTAATTTGGTACTATAAACAC
261 AAACGAGACAAACATTGATTCCAGTAATGGCCTTCATTCATTTTGTAATTAGGCACTATAAACAC
* * * *
255840 ATTCTTCAAATCAGGATAAAGGATAATGATGATTTTCTTTTGCAAGAAAATCTTTTCTTTGCCAT
326 ATTCTTCACATTAGGATAAAGGATAATGATGATTTTCTTTTGCATGAAAATCTTTTCTTTGCCTT
* * * *
255905 ATTTTCCTTAAAAGCAAAGTTTATCCCTCAAATAAGGCAAGCATCGATTCTCGTAACAGTTTCCA
391 ATTTACCTTAAAATCAAAGTTTATCCCTTAAATAAGGCAAGCATCGATTCTCGTAACAGTCTCCA
* * *
255970 TTCTTGTCAAGATT-CAGAACC
456 TTCTTTTCAAGATTGGA-AAAC
** * ** * * * *
255991 AAACGCACATTCCTTTCAATAAG-AAACATAACATTGCA-GCTTTGGTGATG-AAAACAGAGCTT
1 AAAAACACATTCCTTTC-ATTAGCGTACATGACATTG-ATGCTTTGGTGACGCAAAATA-CGCTT
* * * * *
256053 TTCTTACCACCGTTTTTCATTGAATCAAAGTTTGTCTCTTAAATTAGAAAAACTAGAATAGTCAA
63 TTCCTACCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGAGAAACTAGAATAGTCAA
* * * ** * * *
256118 ACTAATCACTGTTCTTTCCATGATTAGGCACCATAAACGCAGTCTTCGCATGAGGATATACGATA
128 ACTAATCCCTGTTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATAAGGATACACGATA
* * * * * * * *
256183 TTAACGCTTTGGTTTTGAAAGAAAAGCTTTTTTCCTCCTAAATTTTGTAAAGTTTGACATCGTGC
193 TTGATGCTTTGGTTTTGAAAGAAAGGCTTTCTTCCCCCCAATTTTTGTAAAGTCTGACATCGTGC
* *
256248 CTCAAATGAGACAAACATTGATTCCAGTAATGGCCTTCATTCATTTTGTAATTAGGCACCATAAA
258 CTCAAACGAGACAAACATTGATTCCAGTAATGGCCTTCATTCATTTTGTAATTAGGCACTATAAA
*
256313 CACATTCTTCACATTAGGATAAAGGATAATGATGATTTTCGTTTGCATGAAAATCTTTTCTTTGC
323 CACATTCTTCACATTAGGATAAAGGATAATGATGATTTTCTTTTGCATGAAAATCTTTTCTTTGC
* * *
256378 CTTATTTACCTTAAAATCAAAGTTTATCCCTTAATTAAGGCAAGAATCGATTCTCGTAATAGTCT
388 CTTATTTACCTTAAAATCAAAGTTTATCCCTTAAATAAGGCAAGCATCGATTCTCGTAACAGTCT
* *
256443 CCACTCTTTTCAGGATTGGAAAAC
453 CCATTCTTTTCAAGATTGGAAAAC
* * * * * **
256467 AAAAACACAATCCTTTTATTAGCGTACCTGACATTGACGCTTTGGGGACGCAAAATACATTTTTC
1 AAAAACACATTCCTTTCATTAGCGTACATGACATTGATGCTTTGGTGACGCAAAATACGCTTTTC
* * * *
256532 CTACTACTGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGATAAATTAGAATAGTCAAACT
66 CTACCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGAGAAACTAGAATAGTCAAACT
* * *
256597 AATCCCTGTT-TTCTTCAGGACTAAGCACCATAAACATAATCTTCTCAT-AGAGATACACGATAT
131 AATCCCTGTTCTT-TTCAGGATTAGGCACCATAAACATAGTCTTCTCATAAG-GATACACGATAT
* * * *
256660 TGATACTTTGATTTTGAAAGAAAGGCTTTCTTCCCCCCAATTTTTATAAAGTCTAACATCGTGCC
194 TGATGCTTTGGTTTTGAAAGAAAGGCTTTCTTCCCCCCAATTTTTGTAAAGTCTGACATCGTGCC
* * ** * *
256725 TCAAATGAGACAAACACTGATTCTGGAAATGGCCTTCATTCAATTTGTAATTAGGCACTATAAAC
259 TCAAACGAGACAAACATTGATTCCAGTAATGGCCTTCATTCATTTTGTAATTAGGCACTATAAAC
* ** *
256790 ACATTCTTCACATTAGGATAAAGGATAACGATGATTTTCTTTTGCATGAAAATCGCTTCTTTCCC
324 ACATTCTTCACATTAGGATAAAGGATAATGATGATTTTCTTTTGCATGAAAATCTTTTCTTTGCC
* * * *
256855 TTGTTTACATTAAAATCAAAGTTTATCCCTTAAATAAGGCAAGCATCG--GCTCATAACAGTCTC
389 TTATTTACCTTAAAATCAAAGTTTATCCCTTAAATAAGGCAAGCATCGATTCTCGTAACAGTCTC
* * *
256918 TATTCTTTTCAAGATT-TAGAACC
454 CATTCTTTTCAAGATTGGA-AAAC
* * * * *
256941 AAAAGCACATTCCCTTCATTAG-GATACATGACACTGATGCTTTGGTAACGCAAAA-AGAGCTTT
1 AAAAACACATTCCTTTCATTAGCG-TACATGACATTGATGCTTTGGTGACGCAAAATA-CGCTTT
* * ** * * * *
257004 TCTTGCCACTATTTTTGATAGAATCAACGTTTATCTCTTAAATTAGAGAAACTAGAATAGTTAAA
64 TCCTACCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGAGAAACTAGAATAGTCAAA
* * ** *
257069 CTAATCACTGTTCTTTTCAAGATTAGGCACCATAAACGCAGTCTTCTCATAAGGATATACGATAT
129 CTAATCCCTGTTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATAAGGATACACGATAT
* * * * * * * * * *
257134 TGACGCTTTAGTTTTGGAAGAAAGGCTTTTTTTCACCTAAATTTTGTAAAGTGTGACATCGGGCC
194 TGATGCTTTGGTTTTGAAAGAAAGGCTTTCTTCCCCCCAATTTTTGTAAAGTCTGACATCGTGCC
* * * *
257199 TCAAACGAGACAAATATTGATTCCAGTAATAGCCTTCATTCACTTTGTAATTAGGCACCATAAAC
259 TCAAACGAGACAAACATTGATTCCAGTAATGGCCTTCATTCATTTTGTAATTAGGCACTATAAAC
* * *
257264 ACTTTCTTCACATTAAGATAAAGGATAATGATGATTTTCTTTTGCACGAAAATCTTTTCTTTGCC
324 ACATTCTTCACATTAGGATAAAGGATAATGATGATTTTCTTTTGCATGAAAATCTTTTCTTTGCC
* * * * * *
257329 TTATTTACCGTAAAATCAAAGTTTATCCCTCAATTAAGGTAAGAATCGATTCTCGTAACAGTTTC
389 TTATTTACCTTAAAATCAAAGTTTATCCCTTAAATAAGGCAAGCATCGATTCTCGTAACAGTCTC
* *
257394 CATTCTTTTGAAGATTGGGAAAC
454 CATTCTTTTCAAGATTGGAAAAC
* * * *
257417 AAAAACACAGTCCTTTTATTAGCATACATGACATTGATGCTTTGGTGACGCAAAATACACTTTTC
1 AAAAACACATTCCTTTCATTAGCGTACATGACATTGATGCTTTGGTGACGCAAAATACGCTTTTC
* * *
257482 CTACCACCGTGTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGATAAATTAGAATAGTCAAACT
66 CTACCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGAGAAACTAGAATAGTCAAACT
* * * * *
257547 AATCCTTGTTCTTTTCAGGATTAGGCACCATGAATATAGTCTTGTCATAAGGATACCCGATATTG
131 AATCCCTGTTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATAAGGATACACGATATTG
* * * * *
257612 ATGCTTTGGTTTTGAAAGAAAGGCTTTCTTCTCACCAATCTTTGTAATGTCTGACTTC-TGCCTC
196 ATGCTTTGGTTTTGAAAGAAAGGCTTTCTTCCCCCCAATTTTTGTAAAGTCTGACATCGTGCCTC
* * * *
257676 AAACGAGACAAACATTGATTCTAGTAATGGCTTTCATTCATTCTGTAATTAGGCACTTTAAACAC
261 AAACGAGACAAACATTGATTCCAGTAATGGCCTTCATTCATTTTGTAATTAGGCACTATAAACAC
* * * * *
257741 ATTCTTCACATTAGGATAATGGATAACGATGATTTTCTTTTGCAAGAAAATCTTTTCCTTGCCAT
326 ATTCTTCACATTAGGATAAAGGATAATGATGATTTTCTTTTGCATGAAAATCTTTTCTTTGCCTT
* * *
257806 ATTTACCTTAAAATCAAAGTTTATCCCTTAAATAAGGCAAGCATTGATTCTCGCAACAATCTCCA
391 ATTTACCTTAAAATCAAAGTTTATCCCTTAAATAAGGCAAGCATCGATTCTCGTAACAGTCTCCA
* **
257871 TTCTTTTCAAGATT-CAGAGCC
456 TTCTTTTCAAGATTGGA-AAAC
* * * * * * * *
257892 AAAAGCACATTCCCTTCATTATG-ATGCATGGCATTGCTGCTTCGGTGACGCAAACAGA-GCTTT
1 AAAAACACATTCCTTTCATTA-GCGTACATGACATTGATGCTTTGGTGACGCAAA-ATACGCTTT
* * * ** * * *
257955 TCTTGCCATCGTTTTTCTTTGAATCAAAGTTTGTCTCTTAAATTAGAAAAACTAGAATAGTCAAA
64 TCCTACCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGAGAAACTAGAATAGTCAAA
* * * * *
258020 CTAATCACTGTTCTTTTCAAGATTAGGCACTATAAACATAGTCTTCTCATATGGATATACGATAT
129 CTAATCCCTGTTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATAAGGATACACGATAT
* * * * * *
258085 TGACGCTTTGGTTTTGAAAGCAAA-GCTTTTTTCCACCTACA-TTTTGTAAAGTTTGACTTCGTG
194 TGATGCTTTGGTTTTGAAAG-AAAGGCTTTCTTCCCCCCA-ATTTTTGTAAAGTCTGACATCGTG
* * ** *
258148 CCTCAAACGTGACAAACATTGATTCCAGCAATGGCCTTCATTCATTTTGTTGTTAGGCACCATAA
257 CCTCAAACGAGACAAACATTGATTCCAGTAATGGCCTTCATTCATTTTGTAATTAGGCACTATAA
* *
258213 ACACATTCTTCACGTTAGGATAAAGGATAATGATGATTTTCGTTTGCATGAAAATCTTTTCTTTG
322 ACACATTCTTCACATTAGGATAAAGGATAATGATGATTTTCTTTTGCATGAAAATCTTTTCTTTG
* * * * * * *
258278 CCTTATTTACCTTAAAATCAAAGATTATCCCTTAATTAAGGCAAGAATCAATTCTCATAATATTC
387 CCTTATTTACCTTAAAATCAAAGTTTATCCCTTAAATAAGGCAAGCATCGATTCTCGTAACAGTC
* *
258343 CCCACTCTTTTCAAGATTGGAAAAC
452 TCCATTCTTTTCAAGATTGGAAAAC
* * * * *
258368 AAAAACACATTCCTTTTATTAGCGTGCATGACA-TAATGCTTTGGGGACGCAAAATACGTTTTTC
1 AAAAACACATTCCTTTCATTAGCGTACATGACATTGATGCTTTGGTGACGCAAAATACGCTTTTC
* * *
258432 CTACTACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGATAAATTAGAATAGTCAAACT
66 CTACCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGAGAAACTAGAATAGTCAAACT
* *
258497 AATCCCTGTT-TTGTTAAGGATTAGGCA-C-TATACATAGTCTTCTCATAAGGATACACGATATT
131 AATCCCTGTTCTT-TTCAGGATTAGGCACCATAAACATAGTCTTCTCATAAGGATACACGATATT
* *
258559 GATGCTTTGATTTTGAAAGAAAGGCTTTCTTCCCCCCAATTTTTATAAAGTCT
195 GATGCTTTGGTTTTGAAAGAAAGGCTTTCTTCCCCCCAATTTTTGTAAAGTCT
258612 AATGATGACA
Statistics
Matches: 13118, Mismatches: 2036, Indels: 520
0.84 0.13 0.03
Matches are distributed among these distances:
455 2 0.00
456 159 0.01
457 2 0.00
458 160 0.01
459 50 0.00
460 13 0.00
464 78 0.01
465 515 0.04
466 15 0.00
467 563 0.04
468 8 0.00
469 2 0.00
472 52 0.00
473 712 0.05
474 2299 0.18
475 3188 0.24
476 3488 0.27
477 1290 0.10
478 103 0.01
480 4 0.00
481 319 0.02
482 90 0.01
483 6 0.00
ACGTcount: A:0.33, C:0.19, G:0.14, T:0.34
Consensus pattern (476 bp):
AAAAACACATTCCTTTCATTAGCGTACATGACATTGATGCTTTGGTGACGCAAAATACGCTTTTC
CTACCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGAGAAACTAGAATAGTCAAACT
AATCCCTGTTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATAAGGATACACGATATTG
ATGCTTTGGTTTTGAAAGAAAGGCTTTCTTCCCCCCAATTTTTGTAAAGTCTGACATCGTGCCTC
AAACGAGACAAACATTGATTCCAGTAATGGCCTTCATTCATTTTGTAATTAGGCACTATAAACAC
ATTCTTCACATTAGGATAAAGGATAATGATGATTTTCTTTTGCATGAAAATCTTTTCTTTGCCTT
ATTTACCTTAAAATCAAAGTTTATCCCTTAAATAAGGCAAGCATCGATTCTCGTAACAGTCTCCA
TTCTTTTCAAGATTGGAAAAC
Found at i:245692 original size:950 final size:953
Alignment explanation
Indices: 242745--258611 Score: 19039
Period size: 950 Copynumber: 16.7 Consensus size: 953
242735 CTTTTTTTAG
** * ** *
242745 GATACATGACATTGATGCTTTTGG-GAATACAAAATA-CGCTTTTGC-TATTACCGTTTTTGATA
1 GATACATGACATTGATGC-TTTGGTG-ACGCAAAATAGAGCTTTT-CTTACCACTGTTTTTGATA
* *
242807 GAATCAAAGTTTGTCTCTTAAATTAGAGAAACGAGAATAGTCAAACTAATCCCTGTTCTTTTCAG
63 GAATCAAAGTTTGTCTCTTAAATTAGAGAAACTAGAATAGTCAAACTAATCACTGTTCTTTTCAG
* * * *
242872 GATTGGGCACCATAAACG-TAGTCTTCTCATAAGGATACATGATATTGACGCTTTAGTTTTGAAA
128 GATTAGGCACCATAAACGCTAGTCTTCTCATAAGGATATACGATATTGACGCTTTGGTTTTGAAA
* * * * *
242936 GAAAGGCTTTCTTCCACCTAATTTTTTTAAAGTTAGACATCGTGCCTCAAACGAGACAAAAATTG
193 GAAAGGCTTTTTTCCACCTAAATTTTGTAAAGTTTGACATCGTGCCTCAAACGAGACAAACATTG
* *
243001 ATTCCAGTAATGGCCTTCATTCATTTTCTAATTAGGCACTATAAACACATTCTTCACATTAGGAT
258 ATTCCAGTAATGGCCTTCATTCATTTTGTAATTAGGCACCATAAACACATTCTTCACATTAGGAT
* * * * * *
243066 AAAGGACAACGATGATTTTCTCTTGCAAGAAAATCTTTTCTTTGCCATATTTAGCTTAAAATCAA
323 AAAGGATAATGATGATTTTCTTTTGCATGAAAATCTTTTCTTTGCCTTATTTACCTTAAAATCAA
*
243131 AGTTTATCCCTTAAATAAGGCAAGCATCGATTCTCGTAACAGTCTCCATTCTTTTCAAGATTCGG
388 AGTTTATCCCTTAAATAAGGCAAGCATCGATTCTCGTAATAGTCTCCATTCTTTTCAAGATT-GG
* * * * * * *
243196 -AACCAAAAGCACATTCCCTTCATTAAG-ATACATGACGTTGCA-GCTTCGGTGACGCAAACAGA
452 AAAACAAAAACACATTCCTTTCATT-AGCGTACATGACATTG-ATGCTTTGGTGACGCAAA-ATA
* * * * * *
243258 -GCTTTTCTTACCACCGTTTTTCATTGAATCAAAGTTTTTCTCTTAAATTAGAAAAACTAGAATA
514 CGCTTTTCCTACCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGAGAAACTAGAATA
* *** *
243322 GTCAAACTAATCACTGTTCTTTTCAGGATTAGGCACCATAAATGCAGTCTTCTCATAAGGATATA
579 GTCAAACTAATCCCTGTTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATAAGGATACA
* * * * * * *
243387 TGATATTGA--CATTTGGTTTTGAAAGAAAGGCTTTTTTCCACCTAAATTTTGTAAAGTTTGACA
644 CGATATTGATGC-TTTGGTTTTGAAAGAAAGGCTTTCTTCCCCCCAATTTTTATAAAGTCTGACA
* * *
243450 TCGTGCCTCAAACGAGACAAACATTGATTCCAGTAACGGCCTTCATTCATTTTGTAATTTGGCAC
708 TCGTGCCTCAAACGAGACAAACATTGATTCTAGTAATGGCCTTCATTCATTTTGTAATTAGGCAC
* * * * *
243515 CATAAACATATTCTTCACATTATGATAAAGGATAATGATGATTTTCGTTTGCATGAAAATCTTTT
773 TATAAACACATTCTTCACATTAGGATAAAGGATAACGATGATTTTCTTTTGCATGAAAATCTTTT
* *
243580 CTTTGCCTTATTTACCTTAAAATCAAAGTTTATCCCTT-AATAAAGGTAAGAATCGATTCTCGTA
838 CTTTGCCTTATTTACCTTAAAATCAAAGTTTATCCCTTAAAT-AAGGCAAGCATCGA-TCTCGTA
* * * * *
243644 ACAGACTCCACTCTTTTCAAGATTGCA-AAACAAAA-CACATTCCTTTTATTAGC
901 ACAGTCTCCATTCTTTTCAAGATT-CAGAACCAAAAGCACATTCCCTTCATTA-C
* * * * * *
243697 G-TACATGACATTGATGCTTTGGGGACGCAAAATA-TGTTTTTCCTACTACCGTTTTTGATAGAA
1 GATACATGACATTGATGCTTTGGTGACGCAAAATAGAGCTTTTCTTACCACTGTTTTTGATAGAA
* * * * * * *
243760 TCAAAGTTTGTCTCTTAAATAAGATAAATTAGAATAGTCAAACTAATCCCTGTTCTGTTGAGGAC
66 TCAAAGTTTGTCTCTTAAATTAGAGAAACTAGAATAGTCAAACTAATCACTGTTCTTTTCAGGAT
* * * * * * * *
243825 TAGGCACTATAAAC-ATAGTCTTCTAATAAGAATACATGATATTGAAGCTTTGATTTTGAAAGAA
131 TAGGCACCATAAACGCTAGTCTTCTCATAAGGATATACGATATTGACGCTTTGGTTTTGAAAGAA
** ** * * * * * *
243889 AGGCTTCCTTCC-CCCCAATTTTCATAAAGTCTAACATCGTGCCTCGAATGAGGCAAACATTGAT
196 AGGCTTTTTTCCACCTAAATTTT-GTAAAGTTTGACATCGTGCCTCAAACGAGACAAACATTGAT
** * * * * * * * *
243953 TCTGGAAATGACCTTCGTTCAATTGGTAATTAGGCACTATAAACACTTTCTTCACATCAGGATAA
260 TCCAGTAATGGCCTTCATTCATTTTGTAATTAGGCACCATAAACACATTCTTCACATTAGGATAA
* * * * *
244018 AGGACAATGATGATTTTCTTTTACATGGAAATCTTTTCTATGCCTTATTTACGTTAAAATCAAAG
325 AGGATAATGATGATTTTCTTTTGCATGAAAATCTTTTCTTTGCCTTATTTACCTTAAAATCAAAG
* * * *
244083 CTTATCCCTTAAATAAGACAAGCATCGATTCTCATAATAGTCTCCATTCTTTTCAAGATTGGGAA
390 TTTATCCCTTAAATAAGGCAAGCATCGATTCTCGTAATAGTCTCCATTCTTTTCAAGATTGGAAA
* * *
244148 ACAAAAACACATTCCTTTCATTAGCGTCCCTGACATTGATGCTTTGGTGACACAAAATACGCTTT
455 ACAAAAACACATTCCTTTCATTAGCGTACATGACATTGATGCTTTGGTGACGCAAAATACGCTTT
* * * *
244213 TCCTACCATCATTTTTGATAGAATCAAAGTTTATCTCTTAAATAAGAGAAACTAAAATAGTCAAA
520 TCCTACCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGAGAAACTAGAATAGTCAAA
*
244278 CTAATCTCTGTTCTTTTCAGGATTAGG---------C--A-----C-CATAAGGATACACGATAT
585 CTAATCCCTGTTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATAAGGATACACGATAT
* * ** **
244326 TGATGCTTTGGTTTTTGAAAGAAA-GCTTTTTTTCGGCCAATTTTTATAAAGTCTGAC-TTTTGC
650 TGATGCTTTGG-TTTTGAAAGAAAGGCTTTCTTCCCCCCAATTTTTATAAAGTCTGACATCGTGC
* * *
244389 CTCAAACGAGACAAATATTGATTCCAGTAATGGCCTTCATTCATTTTGTAATTAGGCACAATAAA
714 CTCAAACGAGACAAACATTGATTCTAGTAATGGCCTTCATTCATTTTGTAATTAGGCACTATAAA
* *
244454 CATATTCTTCACATTAGGATAAAGGATAACAATGATTTTCTTTTGCATGAAAATCTTTTCTTTGC
779 CACATTCTTCACATTAGGATAAAGGATAACGATGATTTTCTTTTGCATGAAAATCTTTTCTTTGC
* *
244519 CTTATTTACATTAAAATCAAAGTTTATCCCTTAAATAAGGCAAGCATCGA-CTCGTAACAATCTC
844 CTTATTTACCTTAAAATCAAAGTTTATCCCTTAAATAAGGCAAGCATCGATCTCGTAACAGTCTC
* *
244583 CATTCTTTTCAAGATTCAGACCCAAAAGCACATTCCCTTCATTAG
909 CATTCTTTTCAAGATTCAGAACCAAAAGCACATTCCCTTCATTAC
* * * *
244628 GAGACATGACAATGATGCTTTGGTAACGCAAAA-AGTGCTTTTCTTACCACTGTTTTTGATAGAA
1 GATACATGACATTGATGCTTTGGTGACGCAAAATAGAGCTTTTCTTACCACTGTTTTTGATAGAA
*
244692 TCAAAGTTTGTCTCTTAAATTAGAGAAACTAGAATAGTCAAACTAATCACTATTCTTTTCCA-GA
66 TCAAAGTTTGTCTCTTAAATTAGAGAAACTAGAATAGTCAAACTAATCACTGTTCTTTT-CAGGA
* * *
244756 TTAGGCACTATAAACGCT-GCCTTCTCATAAGGATATACAATATTGACGCTTTGGTTTTGAAAGA
130 TTAGGCACCATAAACGCTAGTCTTCTCATAAGGATATACGATATTGACGCTTTGGTTTTGAAAGA
*
244820 AAAGCTTTTTTCCACCTAAATTTTGTAAAGTTTGACATCGTGCCTCAAACGAGACAAACATTGAT
195 AAGGCTTTTTTCCACCTAAATTTTGTAAAGTTTGACATCGTGCCTCAAACGAGACAAACATTGAT
* * * *
244885 TCTAGTAATAGCCTTCATTCATTATGTAGTTAGGCACCATAAACACATTCTTCACATTAGGATAA
260 TCCAGTAATGGCCTTCATTCATTTTGTAATTAGGCACCATAAACACATTCTTCACATTAGGATAA
* * *
244950 AGGACAATGATGATTTTCGTTTGCATGAAAATCTTATCTTTGCCTTATTTACCTTAAAATCAAAG
325 AGGATAATGATGATTTTCTTTTGCATGAAAATCTTTTCTTTGCCTTATTTACCTTAAAATCAAAG
* * * * *
245015 TTTATCCCTTCATTAAGGCAAG-ACCCGATTCTCGTAATAGTCTCAACTCTTTTCAAGATTGGAA
390 TTTATCCCTTAAATAAGGCAAGCA-TCGATTCTCGTAATAGTCTCCATTCTTTTCAAGATTGGAA
* * * *
245079 AACAAAAACACATTCCTTTTATTAGCGTACATGACATTGATGCTGTGGGGACGCAAAATACGTTT
454 AACAAAAACACATTCCTTTCATTAGCGTACATGACATTGATGCTTTGGTGACGCAAAATACGCTT
** * * *
245144 TTCCTATAACCGTTTTTGATAAAATCAAAGTTTGTCTCTTAAATAAGATAAATTAGAATAGTCAA
519 TTCCTACCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGAGAAACTAGAATAGTCAA
* * * * *
245209 ACTAATCCCTGTTCTCTTCAGGACTAGGTACTATAAACATAGTCTTCTCATGAGGATACACGATA
584 ACTAATCCCTGTTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATAAGGATACACGATA
* * *
245274 TTGAAGCTTTGATTTTGAAAGAAAGGCTTTCTTCCCCCCAATTTTTATAAAGTCTAACATCGTGC
649 TTGATGCTTTGGTTTTGAAAGAAAGGCTTTCTTCCCCCCAATTTTTATAAAGTCTGACATCGTGC
* * * * * * * *
245339 CTCGAATGAGGCAAACATTGATTCTGGAAATGGCCTTCGTTCAATTGGTAATTAGGCACTATAAA
714 CTCAAACGAGACAAACATTGATTCTAGTAATGGCCTTCATTCATTTTGTAATTAGGCACTATAAA
*
245404 CACATTCTTCACATTAGGATAAAGGATAACGATGATTTTCTTTTGCACGAAAATCTTTTCTTTGC
779 CACATTCTTCACATTAGGATAAAGGATAACGATGATTTTCTTTTGCATGAAAATCTTTTCTTTGC
* * *
245469 CTTTTTTACATTAAAATCAAAGTTTATCCCTTAAATAAGGCAAGCATCG-GCTCGTAACAGTCTC
844 CTTATTTACCTTAAAATCAAAGTTTATCCCTTAAATAAGGCAAGCATCGATCTCGTAACAGTCTC
*
245533 CATTCTTTTCAAGATTCAGAACCAAAAGAACATTCCCTTCATTAC
909 CATTCTTTTCAAGATTCAGAACCAAAAGCACATTCCCTTCATTAC
* * * *
245578 GAGACATGACATTGAGGCTTTGGTAACGCAAAA-AGAGCTTTTCTTGCCACTGTTTTTGATAGAA
1 GATACATGACATTGATGCTTTGGTGACGCAAAATAGAGCTTTTCTTACCACTGTTTTTGATAGAA
* * * *
245642 TTAAAGTTTATCTCTTAAATTAGAGAAACTAGAATAGTCAAAGTAATCACTGTTCTTTTTAGGAT
66 TCAAAGTTTGTCTCTTAAATTAGAGAAACTAGAATAGTCAAACTAATCACTGTTCTTTTCAGGAT
* * *
245707 TAGGCACCGTAAACG-TAGTCTTCTCATAAGGATATACGATATTGACGCTTTGGTTTCGAAAGGA
131 TAGGCACCATAAACGCTAGTCTTCTCATAAGGATATACGATATTGACGCTTTGGTTTTGAAAGAA
* * *
245771 AGGCTTTTTTCCACCTAAAATTGGTAAAGTTTCACATCGTGCCTCAAACGAGACAAACATTGATT
196 AGGCTTTTTTCCACCTAAATTTTGTAAAGTTTGACATCGTGCCTCAAACGAGACAAACATTGATT
* *
245836 CCAGTAATGGCCTTCATTCATTTTGTAATTAGGCACAATAAACACGTTCTTCACATTAGGATAAA
261 CCAGTAATGGCCTTCATTCATTTTGTAATTAGGCACCATAAACACATTCTTCACATTAGGATAAA
* *
245901 GGATAATGATGATTTTCTTTTGCAAGGAAATCTTTTCTTTGCCTTATTTACCTTAAAATCAAAGT
326 GGATAATGATGATTTTCTTTTGCATGAAAATCTTTTCTTTGCCTTATTTACCTTAAAATCAAAGT
* * * * *
245966 TTATCCCTTAAATAAGGTAAGCATCGATTCTCCTAACAGTCTCCATTCTTTTCAAGATTTGAAAC
391 TTATCCCTTAAATAAGGCAAGCATCGATTCTCGTAATAGTCTCCATTCTTTTCAAGATTGGAAAA
* * * * * *
246031 CAAAAGCACATTCCCTACATTAG-GATACATGACATTGACGCTTTGGTTACGC-AAATAGAGCTT
456 CAAAAACACATTCCTTTCATTAGCG-TACATGACATTGATGCTTTGGTGACGCAAAATA-CGCTT
* * * * * *
246094 TTCTTACCACCGTTTTTTATTGAGTCAAAG-TT-TCTCTTAAATTAGAAAAACTAGAATAGTCAA
519 TTCCTACCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGAGAAACTAGAATAGTCAA
* * ** * ** *
246157 ACTAATCACTGTTCTTTTTAGGATTAGGCACCATAAACGCAGTCCTCTCGGAAGGATATACGATA
584 ACTAATCCCTGTTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATAAGGATACACGATA
** * * * * * * *
246222 TTGACACTTTGGTTTCGAAAGAAAGGCTTTTTTCCACCTAAATTTTGTAAAGTTTGACATCGTGC
649 TTGATGCTTTGGTTTTGAAAGAAAGGCTTTCTTCCCCCCAATTTTTATAAAGTCTGACATCGTGC
* * * * * *
246287 CTCAAACGAGGCAAGCATTGATTCCAGTAATGGCCTTCATTCATTTTGTAATTAGGCACAAGAAG
714 CTCAAACGAGACAAACATTGATTCTAGTAATGGCCTTCATTCATTTTGTAATTAGGCACTATAAA
* * * *
246352 CACATTCTTCACGTTAGGATAAAGGATAATGATGATTTTCTTTTGCAAGGAAATCTTTTCTTTGC
779 CACATTCTTCACATTAGGATAAAGGATAACGATGATTTTCTTTTGCATGAAAATCTTTTCTTTGC
* *
246417 CTTATTTACCTTAAAATCAAAGTTTATCCCTTAAATAAGGTAAGCATCGATTCTTGTAACAGTCT
844 CTTATTTACCTTAAAATCAAAGTTTATCCCTTAAATAAGGCAAGCATCGA-TCTCGTAACAGTCT
* *
246482 CCATTCTTTTCAAGATTCGGAACCAAAAGCACATTCCCTTCATTAG
908 CCATTCTTTTCAAGATTCAGAACCAAAAGCACATTCCCTTCATTAC
* * *
246528 GATACATGACATTGATGCTTTGGTGACAC-AAATAGAGCTTTTCTTACCA-TGATTTTTCATTGA
1 GATACATGACATTGATGCTTTGGTGACGCAAAATAGAGCTTTTCTTACCACTG-TTTTTGATAGA
* * * * * *
246591 GTCAAAGTTTGTCTCTTAAATTAAAAAAACTAGAATAGTCAAACTAATCACTATTGTTTTTAGGA
65 ATCAAAGTTTGTCTCTTAAATTAGAGAAACTAGAATAGTCAAACTAATCACTGTTCTTTTCAGGA
* * * * *
246656 TTAGGGACCATAAAACAC-AGTCTTCTCATATGGATACACGATATTGACGATTTGGTTTTGAAAG
130 TTAGGCACCAT-AAACGCTAGTCTTCTCATAAGGATATACGATATTGACGCTTTGGTTTTGAAAG
* *
246720 AAAGGCTTTTCTCCACCTAAATTTTGTAAAGTTTGACATCGTGCCTCAAACGAGACAAACTTTGA
194 AAAGGCTTTTTTCCACCTAAATTTTGTAAAGTTTGACATCGTGCCTCAAACGAGACAAACATTGA
* * *
246785 TTCCAGTAATGGCCTTTATTCATTTTGTAATTAGGCACTATGAACACATTCTTCACATTAGGATA
259 TTCCAGTAATGGCCTTCATTCATTTTGTAATTAGGCACCATAAACACATTCTTCACATTAGGATA
* * *
246850 AAGGATAATGATGATTTTCTTTTGCATGAAAATCTTTTTTTTTTTTACCTTATTTACCTTAATAT
324 AAGGATAATGATGATTTTCTTTTGCATGAAAATC----TTTTCTTTGCCTTATTTACCTTAAAAT
* * * * * *
246915 CAAAGTTTATCGCTTAATTAAGGCAAGAATCGATTCTCGTCACT-GTCTCCACTATTTTCAAGAT
385 CAAAGTTTATCCCTTAAATAAGGCAAGCATCGATTCTCGT-AATAGTCTCCATTCTTTTCAAGAT
* * * * *
246979 TGGAAAACAAAAACACATTCCTTTTATTGGTGTACATGACATTGATGCTTTCGAGAACGCAAAAT
449 TGGAAAACAAAAACACATTCCTTTCATTAGCGTACATGACATTGATGCTTTGGTG-ACGCAAAAT
* * * * * *
247044 ACACTTTTCCTACTACCGTTTTTGATAGAATCAAAGTTTGTCTCCTAAATTAGAGAAACTAAAAC
513 ACGCTTTTCCTACCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGAGAAACTAGAAT
* * *
247109 AGTCAAACTAATCCCTATTCTTTTTAGGATTAGGCACCATAAACGTAGTCTTCTCATAAGGATAC
578 AGTCAAACTAATCCCTGTTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATAAGGATAC
* * * * *
247174 GCGATATTGACGCTTTGGTTTTGAAAGAAAGG-TCTTCTTCCACCTAATTTTTGTAAAGT-TAGA
643 ACGATATTGATGCTTTGGTTTTGAAAGAAAGGCT-TTCTTCCCCCCAATTTTTATAAAGTCT-GA
* *
247237 CATCGTGCCTCAAACGAGACAAACATTGATTCCAGTAATGGCCTTCATTCATTTTCTAATTAGGC
706 CATCGTGCCTCAAACGAGACAAACATTGATTCTAGTAATGGCCTTCATTCATTTTGTAATTAGGC
*
247302 ACTATAAACAAATTCTTCACATTAGGATAAAGGATAACGATGATTTTCTTTTGCAAT-AAAATCT
771 ACTATAAACACATTCTTCACATTAGGATAAAGGATAACGATGATTTTCTTTTGC-ATGAAAATCT
* * *
247366 TTTCCTTGCCGTATTTACCTTAAAATCAAAGTTTATCCCTTAAATAAGGCAAGCACCGATTCTCG
835 TTTCTTTGCCTTATTTACCTTAAAATCAAAGTTTATCCCTTAAATAAGGCAAGCATCGA-TCTCG
* * * *
247431 TAATAGTCTCCATTCTTTTCATGATTCAGAACCAAAAGCACATTGCCTTCATTAA
899 TAACAGTCTCCATTCTTTTCAAGATTCAGAACCAAAAGCACATTCCCTTCATTAC
* * * * * * *
247486 GATACATAACGTTGCA-ACTTCGGTGACGC-AAACAGAGCTTTTCTTACCACCGTTTTTCATTA-
1 GATACATGACATTG-ATGCTTTGGTGACGCAAAATAGAGCTTTTCTTACCACTGTTTTTGA-TAG
* *
247548 AATCAAAGTTTGTCTCTTAAATTAGAAAAACTAGAATAGTCAAACTAATCACTGTTCTTTTCAAG
64 AATCAAAGTTTGTCTCTTAAATTAGAGAAACTAGAATAGTCAAACTAATCACTGTTCTTTTCAGG
* * * * * *
247613 ATTAGGCATCATAAATGC-ACTCTTCTCAAAAGGATATACAATATTGACGCTTTGGTTTTTAAAG
129 ATTAGGCACCATAAACGCTAGTCTTCTCATAAGGATATACGATATTGACGCTTTGGTTTTGAAAG
* * *
247677 AAAAGCTTTTTTCCACCTAAATTTTGTAAAGTTTGACAGCATGCCTCAAACGAGACAAACATTGA
194 AAAGGCTTTTTTCCACCTAAATTTTGTAAAGTTTGACATCGTGCCTCAAACGAGACAAACATTGA
247742 TTCCAGTAATGGCCTTCATTCATTTTGTAATTAGGCACCATAAACACATTCTTCACATTAGGATA
259 TTCCAGTAATGGCCTTCATTCATTTTGTAATTAGGCACCATAAACACATTCTTCACATTAGGATA
* * *
247807 AAGGATAACGATGATTTTCTTTTCCATGAAAATCTTTTCATTGCCTTATTTACCTTAAAATCAAA
324 AAGGATAATGATGATTTTCTTTTGCATGAAAATCTTTTCTTTGCCTTATTTACCTTAAAATCAAA
* * * * * *
247872 CTTTATCCCTTAATTAAGGTAAGAATCGATTCTCGTAATAGTCTCCACTCTTGTCAAGATTGGAA
389 GTTTATCCCTTAAATAAGGCAAGCATCGATTCTCGTAATAGTCTCCATTCTTTTCAAGATTGGAA
* * * * *
247937 AACAAATACACAATCCTTTTATTAGCGTACATGACATTGATGCTTTGGGGACGCAAAATACGTTT
454 AACAAAAACACATTCCTTTCATTAGCGTACATGACATTGATGCTTTGGTGACGCAAAATACGCTT
* * * *
248002 TTCCTACTACCGCTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGATAAATTAGAATAGTCAA
519 TTCCTACCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGAGAAACTAGAATAGTCAA
* * * * *
248067 ACTAACCCCTGTTCTGTTCAGGACTAGGCACTATAAACATAGTCTTCTTATAAGGATACACGATA
584 ACTAATCCCTGTTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATAAGGATACACGATA
* *
248132 TTGATGCTTTGATTTTGAAAGAAAGGCTTTCTTCCCCCCAATTTTTATAAACGTCTAACATCGTG
649 TTGATGCTTTGGTTTTGAAAGAAAGGCTTTCTTCCCCCCAATTTTTATAAA-GTCTGACATCGTG
* ** * * * * * *
248197 CCTCGAATAAGACAAACATTGATTCTGGAAATGGCCTTCGTTCAATTGGTAATAAGGCACTATAA
713 CCTCAAACGAGACAAACATTGATTCTAGTAATGGCCTTCATTCATTTTGTAATTAGGCACTATAA
* * * * * * *
248262 ACACATTCTTCACATCAGGATAAAGGACAATGATGATTTTCTTTTACTTGGAAATCTTTTCTATG
778 ACACATTCTTCACATTAGGATAAAGGATAACGATGATTTTCTTTTGCATGAAAATCTTTTCTTTG
* * * * ** * *
248327 CCTTATTTACGTTAAAGTCAAAGCTTATCCCATAAATAAGATAAGCATCGATTCTCATAATAGTC
843 CCTTATTTACCTTAAAATCAAAGTTTATCCCTTAAATAAGGCAAGCATCGA-TCTCGTAACAGTC
** * * * *
248392 TCCATTCTTTTCAAGATTGGGAAACAAAAACACATT-TCTTCCTTTA-
907 TCCATTCTTTTCAAGATTCAGAACCAAAAGCACATTCCCTT-CATTAC
* * * * * *
248438 GCATCCCTAACATTGATGCTTTGGTGACGCAAAATA-TGCTTTTCCTACCA-TCATTTTTGATAG
1 G-ATACATGACATTGATGCTTTGGTGACGCAAAATAGAGCTTTTCTTACCACT-GTTTTTGATAG
* * * * *
248501 AATCAAAGTTTATCTCTTAAATAAGAGAAACTAAAATAGTCAAACTAATCTCTCTTCTTTTCAGG
64 AATCAAAGTTTGTCTCTTAAATTAGAGAAACTAGAATAGTCAAACTAATCACTGTTCTTTTCAGG
* * * *
248566 ATTAGGCACCATAAAC-ATAGGCTTCTCATAAGGATACACGATATTGATGCTTTGGTTTTTGAAA
129 ATTAGGCACCATAAACGCTAGTCTTCTCATAAGGATATACGATATTGACGCTTTGG-TTTTGAAA
* * * ** ** * * *
248630 -AAAGGCTTTTTTCTCGCC-AATTTTTATAAAGTCAGAC-TTTTGCCTCAGACAAGACAAATATT
193 GAAAGGCTTTTTTC-CACCTAAATTTTGTAAAGTTTGACATCGTGCCTCAAACGAGACAAACATT
* *
248692 GATTCTAGTAATGGCCTTCATTCATTTTGTAATTAGGCACTATAAACACATTCTTCACATTAGGA
257 GATTCCAGTAATGGCCTTCATTCATTTTGTAATTAGGCACCATAAACACATTCTTCACATTAGGA
* * * * *
248757 TAAAGGATAATGATGATTTTTTTTTACATGAAAATCTTTTCTATGCCATATTTACTTTAAAATCA
322 TAAAGGATAATGATGATTTTCTTTTGCATGAAAATCTTTTCTTTGCCTTATTTACCTTAAAATCA
* * * *
248822 AAGCTTATCCCTTAAATACGACAAGCATCGATTCTCATAATAGTCTCCATTCTTTTCAAGATTGG
387 AAGTTTATCCCTTAAATAAGGCAAGCATCGATTCTCGTAATAGTCTCCATTCTTTTCAAGATTGG
* ** *
248887 GAAACAAAAACACATTCCTTTCATTAGCG-GGA-GACATTGATGCTTTGGTGGCGCAAAATACGC
452 AAAACAAAAACACATTCCTTTCATTAGCGTACATGACATTGATGCTTTGGTGACGCAAAATACGC
* * ** * * * *
248950 TTTCCCTACCATCAATTTTGATAGAATAAAAGTCTATCTCTTAAATAAGAGAAACTAAAATAGTC
517 TTTTCCTACCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGAGAAACTAGAATAGTC
* * * *
249015 AAACTAATCCCTATTTTTTTCAGGATTAGGCACCATAAACGTAGGCTTCTCATAAGGATACACGA
582 AAACTAATCCCTGTTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATAAGGATACACGA
* *
249080 TATTGATGCTTTGGTTTTTGAAAGAAAGGCTTTCTTCTCGCCAATTTTGT-TAAAGTCCTGAC-T
647 TATTGATGCTTTGG-TTTTGAAAGAAAGGCTTTCTTCCCCCCAATTTT-TATAAAGT-CTGACAT
** * *
249143 TTTACCTCAAACGAGACAAATATTGATTCTAGTAATGGCCTTCATTCATTTTGTAATTAGGCACT
709 CGTGCCTCAAACGAGACAAACATTGATTCTAGTAATGGCCTTCATTCATTTTGTAATTAGGCACT
249208 ATAAACACATTCTTCACATTAGGATAAAGGATAACGATGATTTTCTTTTGCATGAAAATCTTTTC
774 ATAAACACATTCTTCACATTAGGATAAAGGATAACGATGATTTTCTTTTGCATGAAAATCTTTTC
*
249273 TTTGCCTTATTTACATTAAAATCAAAGTTTATCCCTTAAATAAGGCAAGCATCGA-CTCGTAACA
839 TTTGCCTTATTTACCTTAAAATCAAAGTTTATCCCTTAAATAAGGCAAGCATCGATCTCGTAACA
* *
249337 GTCTCCATACTTTTCAAGATTCAGAACCAAAAGCACATTCCCTTCATTAG
904 GTCTCCATTCTTTTCAAGATTCAGAACCAAAAGCACATTCCCTTCATTAC
* * * * *
249387 GAGACATGACATTGATGCTTTGGTAATGCAAAA-AGAGCTTTTCTTGCCACAGTTTTTGATAGAA
1 GATACATGACATTGATGCTTTGGTGACGCAAAATAGAGCTTTTCTTACCACTGTTTTTGATAGAA
*
249451 TCAAAGTTTGTCTATTAAATTAGAGAAACTAGAATAGTCAAACTAATCACTGTTCTTTTTCAGGA
66 TCAAAGTTTGTCTCTTAAATTAGAGAAACTAGAATAGTCAAACTAATCACTGTTC-TTTTCAGGA
* *
249516 TTAGGCACTATAAACGCT-GTCTTCTCATAAGGATATACAATATTGACGC-TTGGTTTTGAAAGA
130 TTAGGCACCATAAACGCTAGTCTTCTCATAAGGATATACGATATTGACGCTTTGGTTTTGAAAGA
* *
249579 AAAGCTTTTTTCCACCTAAATTTTGTAAAGTTTGACATCGTGCCTCAAACGAGACAAATATTGAT
195 AAGGCTTTTTTCCACCTAAATTTTGTAAAGTTTGACATCGTGCCTCAAACGAGACAAACATTGAT
* * * * *
249644 TCCAGTAATAGCCTTCATTCACTTTGTAACTAGGCAACATAAACATATTCTTCACATTAGGGATA
260 TCCAGTAATGGCCTTCATTCATTTTGTAATTAGGCACCATAAACACATTCTTCACATTA-GGATA
* * * *
249709 AAGGATAATGAAGATTTTCGTTTGTATGAAAATCTTTTCTTTGCCTTATTTACGTTAAAATCAAA
324 AAGGATAATGATGATTTTCTTTTGCATGAAAATCTTTTCTTTGCCTTATTTACCTTAAAATCAAA
* * * * * *
249774 GTCTATCCCTTAATTAAGGCAAGAATCGATTCTCTTAATAGTCTCGACTCTTTTCAAGATTGGAA
389 GTTTATCCCTTAAATAAGGCAAGCATCGATTCTCGTAATAGTCTCCATTCTTTTCAAGATTGGAA
* * * * * * *
249839 AACAAAAACACATTACTTTTATTAGCATATATGACATTGATGCTTTGGGGACGTAAAATACGTTT
454 AACAAAAACACATTCCTTTCATTAGCGTACATGACATTGATGCTTTGGTGACGCAAAATACGCTT
* * * * *
249904 TTCCTACAACCAGTTTTTGATAGAATCAAAGTTTGTGTATTAAATAAGATAAATTAGAATAGTCA
519 TTCCTACCACC-GTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGAGAAACTAGAATAGTCA
* * * * *
249969 AACTAATCCTTATTCTGTTCAGGACTAGGCACTATAAACATAGTCTTCTCATAAGGATACACGAT
583 AACTAATCCCTGTTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATAAGGATACACGAT
* * *
250034 ATTGACGCTTTGATTTTGAAAGAAAGGCTTTCTT-CCCCCAATTTTTATAAAGTCTAACATCGTG
648 ATTGATGCTTTGGTTTTGAAAGAAAGGCTTTCTTCCCCCCAATTTTTATAAAGTCTGACATCGTG
* * * * *
250098 CCTCAAATGAGACAAACATTAATTC-AGGAAACGGCCTTCATTCAATTTGTAATTAGGCACTATA
713 CCTCAAACGAGACAAACATTGATTCTA-GTAATGGCCTTCATTCATTTTGTAATTAGGCACTATA
* * * * *
250162 AACACATTCTTCACATCAGGATAAAGGAT-ACTGATGATTTTCTTTTACAAGGAAATCTTTTCTA
777 AACACATTCTTCACATTAGGATAAAGGATAAC-GATGATTTTCTTTTGCATGAAAATCTTTTCTT
* * * * * *
250226 CGCCTTATTTACTTTAAAATCAAAGCTTATCCCTTAAATAAGACAAGCATCGATTCTCATAATAG
841 TGCCTTATTTACCTTAAAATCAAAGTTTATCCCTTAAATAAGGCAAGCATCGA-TCTCGTAACAG
** * *
250291 TCTCCATTCTTTTCAAGATTGGGAAACAAACA-CACATTCCTTTCATTAGC
905 TCTCCATTCTTTTCAAGATTCAGAACCAAA-AGCACATTCCCTTCATTA-C
* * * *
250341 G-TCCCTGACATTGAAGCTTTGGTGACGCAAAATA-CGCTTTTCCTT-CCATCAT-TTTTT-ATA
1 GATACATGACATTGATGCTTTGGTGACGCAAAATAGAGCTTTT-CTTACCA-C-TGTTTTTGATA
* * * * *
250401 GAATTAAAGTTTATCTCTTAAATAAGAGAAACTAAAATAGTCAAACTAATCCCTGTTCTTTTCAG
63 GAATCAAAGTTTGTCTCTTAAATTAGAGAAACTAGAATAGTCAAACTAATCACTGTTCTTTTCAG
* * * *
250466 GATTAGGCACCATAAAC-ATAGGCTTCTCATAAGGATACACGATATTGATGCTTTGGTTTTTGAA
128 GATTAGGCACCATAAACGCTAGTCTTCTCATAAGGATATACGATATTGACGCTTTGG-TTTTGAA
*** * * * ** * *
250530 AGAAAGGCTTTCTTTCC-GGGAATTTTTATAAAGTCTGAC-TTTTGCATCAAACGAGACAAATAT
192 AGAAAGGCTTT-TTTCCACCTAAATTTTGTAAAGTTTGACATCGTGCCTCAAACGAGACAAACAT
* *
250593 TGATTCTAGTAATGGCCTTCATTCATTTTGTAATTAGGCA-C-TATA-A-A-----CACATTAGG
256 TGATTCCAGTAATGGCCTTCATTCATTTTGTAATTAGGCACCATAAACACATTCTTCACATTAGG
* ** *
250649 ATAAAGGATAACGATGATTTTCTTTTGCACAAAAATCTTTTCTTTGCCTT-TTCTACATTAAAAT
321 ATAAAGGATAATGATGATTTTCTTTTGCATGAAAATCTTTTCTTTGCCTTATT-TACCTTAAAAT
* *
250713 CAAAGTTTATCCCTTAAATAAGGCAAGCATCG--GCTCGTAACAGTCTCCATTCTTTTCAAGATT
385 CAAAGTTTATCCCTTAAATAAGGCAAGCATCGATTCTCGTAATAGTCTCCATTCTTTTCAAGATT
* * * * ** * * * *
250776 -CAGAACCAAAAGCTCATTCCCCTCACTAG-GAGACATGACATTAATGCTTTGGTAACGCAAAAC
450 GGA-AAACAAAAACACATTCCTTTCATTAGCG-TACATGACATTGATGCTTTGGTGACGCAAAA-
* * ** * * *
250839 GA-GCTTTT-CTGGCCACTATTTTTGATAGAATCACAGTTTGTCTCTTAAGTTAGAGAAACTAGA
512 TACGCTTTTCCT-ACCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGAGAAACTAGA
* * * ** *
250902 ATAGTCAAACTAATCACTGTTCTTTTCAGGATTAGGAACTATAAACGCAGTCTTCTCGTAAGGAT
576 ATAGTCAAACTAATCCCTGTTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATAAGGAT
* * * * * * * *
250967 ATACGATATTGATGCTTTGGTTTTGAAAGAAAGGCTTTTTTCCACCTAAATTTTGTAAACTTTGA
641 ACACGATATTGATGCTTTGGTTTTGAAAGAAAGGCTTTCTTCCCCCCAATTTTTATAAAGTCTGA
* * * * * *
251032 CATCGTGCCTCAAACAAGACAAATATTGATTCCAGTAATAGCCTTCATTCACTTTGTAACTAGGC
706 CATCGTGCCTCAAACGAGACAAACATTGATTCTAGTAATGGCCTTCATTCATTTTGTAATTAGGC
* * * *
251097 ACCATAAACATATTCTTCACATTAGGATAAAGGATAATGATGATTTTCTTTTGCATGAAAAAACT
771 ACTATAAACACATTCTTCACATTAGGATAAAGGATAACGATGATTTTCTTTTGCATG-AAAATCT
* * * * *
251162 TTTCTTTGCGTTATTTACCTTAAAATCAAAGTTTATCCCTTAATTAAGGTAAGAATCGATTCTTG
835 TTTCTTTGCCTTATTTACCTTAAAATCAAAGTTTATCCCTTAAATAAGGCAAGCATCGA-TCTCG
* ** * * * * *
251227 TAACAGTCTCCATTCTTTTTAAGATTGGGAAACAAAAACACAGT-CTTTTATTAGC
899 TAACAGTCTCCATTCTTTTCAAGATTCAGAACCAAAAGCACATTCCCTTCATTA-C
* * * ** *
251282 G-TACATGACATTGATGCTTTCGTGACGCAAAATACA-CTTTTCCTACCACCATTTTTAATAGAA
1 GATACATGACATTGATGCTTTGGTGACGCAAAATAGAGCTTTTCTTACCACTGTTTTTGATAGAA
** * * * * *
251345 AGAAAGTTTGTCACTTAAATAAGATAAATTAGGATAGTCAAACTAATC-CATGTTCTTTTCAGGA
66 TCAAAGTTTGTCTCTTAAATTAGAGAAACTAGAATAGTCAAACTAATCAC-TGTTCTTTTCAGGA
* * * * * * * *
251409 TTAGGCACCATGAACAC-ATTCTTGTCATAAGGAAACACGATATTGATGCTTTGGTTTTTAAAGA
130 TTAGGCACCATAAACGCTAGTCTTCTCATAAGGATATACGATATTGACGCTTTGGTTTTGAAAGA
* * * * * * * *
251473 AATGCTTTCTTCTCGCC--AATCTTCGTAATGTCTGACTTC-TGCCACAAACGAGACAAACATTG
195 AAGGCTTTTTTC-CACCTAAAT-TTTGTAAAGTTTGACATCGTGCCTCAAACGAGACAAACATTG
* * * * * * *
251535 ATTCTAGTAATGGCCTTCATTCATGTTGTAATTTGGTACTATAAACACATTCTTCAAATCAGGAT
258 ATTCCAGTAATGGCCTTCATTCATTTTGTAATTAGGCACCATAAACACATTCTTCACATTAGGAT
* * * *
251600 AAAGGATAATGATGATTTTCTTTTGCAAGAAAATCTTTTCTTTGCCATATTTTCCTTAAAAGCAA
323 AAAGGATAATGATGATTTTCTTTTGCATGAAAATCTTTTCTTTGCCTTATTTACCTTAAAATCAA
* * * *
251665 AGTTTATCCCTCAAATAAGGCAAGCATCGATTCTCGTAACAGTCTCCATTCTTGTCAAGATT-CA
388 AGTTTATCCCTTAAATAAGGCAAGCATCGATTCTCGTAATAGTCTCCATTCTTTTCAAGATTGGA
* * * ** * * * *
251729 GAACCAAAAGCACATTCCTTTCAATAAG-AAACATAACATTGCA-GCATTGGTGATG-AAAACAG
453 -AAACAAAAACACATTCCTTTC-ATTAGCGTACATGACATTG-ATGCTTTGGTGACGCAAAATA-
* * * * * *
251791 AGCTTTTCTTACCACCGTTTTTCATTGAATCAAAGTTTGTCTCTTAAATTAGAAAAACTAGAATA
514 CGCTTTTCCTACCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGAGAAACTAGAATA
* * * ** * * *
251856 GTCAAACTAATCACTGTTCTTTCCATGATTAGGCACCATAAACGCAGTCTTCGCATGAGGATATA
579 GTCAAACTAATCCCTGTTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATAAGGATACA
* * * * * * * ** *
251921 CGATATTAACGCTTTGGTTTTGAAAGAAAAGCTTTTTTCCTCCTAAATTTTGCAAAGTTTGACAT
644 CGATATTGATGCTTTGGTTTTGAAAGAAAGGCTTTCTTCCCCCCAATTTTTATAAAGTCTGACAT
* *
251986 CGTGCCT---------CAAACATTGATTCCAGTAATGGCCTTCATTCATTTTGTAATTAGGCACC
709 CGTGCCTCAAACGAGACAAACATTGATTCTAGTAATGGCCTTCATTCATTTTGTAATTAGGCACT
* *
252042 ATAAACACATTCTTCACATTAGGATAAAGGATAATGATGATTTTCGTTTGCATGAAAATCTTTTC
774 ATAAACACATTCTTCACATTAGGATAAAGGATAACGATGATTTTCTTTTGCATGAAAATCTTTTC
* * *
252107 TTTGCCTTATTTACCTTAAAATCAAAGTTTATCCCTTAATTAAGGCAAGAATCGATTCTCGTAAT
839 TTTGCCTTATTTACCTTAAAATCAAAGTTTATCCCTTAAATAAGGCAAGCATCGA-TCTCGTAAC
* * * * * * * *
252172 AGTCTCCACTCTTTTCAGGATT-GGAAAACAAAAACACAATCCTTTTATTAGC
903 AGTCTCCATTCTTTTCAAGATTCAG-AACCAAAAGCACATTCCCTTCATTA-C
* * * * * *
252224 G-TACATGACATTGACGCTTTGGGGACGCAAAATACA-TTTTTCCTACTACTGTTTTTGATAGAA
1 GATACATGACATTGATGCTTTGGTGACGCAAAATAGAGCTTTTCTTACCACTGTTTTTGATAGAA
* * * *
252287 TCAAAGTTTGTCTCTTAAATAAGATAAATTAGAATAGTCAAACTAATCCCTGTT-TTCTTCAGGA
66 TCAAAGTTTGTCTCTTAAATTAGAGAAACTAGAATAGTCAAACTAATCACTGTTCTT-TTCAGGA
* * * * * ** *
252351 CTAAGCACCATAAAC-ATAATCTTCTCAT-AGAGATACACGATATTGATACTTTGATTTTGAAAG
130 TTAGGCACCATAAACGCTAGTCTTCTCATAAG-GATATACGATATTGACGCTTTGGTTTTGAAAG
* * * * * * * * *
252414 AAAGGCTTTCTTCCCCCCAATTTTTATAAAGTCTAACATCGTGCCTCAAATGAGACAAACACTGA
194 AAAGGCTTTTTTCCACCTAAATTTTGTAAAGTTTGACATCGTGCCTCAAACGAGACAAACATTGA
** * * *
252479 TTCTGGAAATGGCCTTCATTCAATTTGTAATTAGGCACTATAAACACATTCTTCACATTAGGATA
259 TTCCAGTAATGGCCTTCATTCATTTTGTAATTAGGCACCATAAACACATTCTTCACATTAGGATA
* ** * * *
252544 AAGGATAACGATGATTTTCTTTTGCATGAAAATCGCTTCTTTCCCTTGTTTACATTAAAATCAAA
324 AAGGATAATGATGATTTTCTTTTGCATGAAAATCTTTTCTTTGCCTTATTTACCTTAAAATCAAA
* * * * *
252609 GTTTATCCCTTAAATAAGGCAAGCATCG--GCTCATAACAGTCTCTATTCTTTTCAAGATT-TAG
389 GTTTATCCCTTAAATAAGGCAAGCATCGATTCTCGTAATAGTCTCCATTCTTTTCAAGATTGGA-
* * * * * *
252671 AACCAAAAGCACATTCCCTTCATTAG-GATACATGACACTGATGCTTTGGTAACGCAAAA-AGAG
453 AAACAAAAACACATTCCTTTCATTAGCG-TACATGACATTGATGCTTTGGTGACGCAAAATA-CG
* * * * *
252734 CTTTTCTTCCCACTGTTTTTGATAGAATCAACA-TTTATCTCTTAAATTAGAGAAACTAGAATAG
516 CTTTTCCTACCACCGTTTTTGATAGAATCAA-AGTTTGTCTCTTAAATAAGAGAAACTAGAATAG
* * * *
252798 TTAAACTAATCACTGTTCTTTTCAAGATTAGGCACCATAAACATAGGCTTCTCATAAGGATACAC
580 TCAAACTAATCCCTGTTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATAAGGATACAC
* * * *
252863 GATATTGATGCTTTGGTTTTTGAAA-AAAGGCTTTTTTCTCGCCAATTTTTATAAAGTCAGAC-T
645 GATATTGATGCTTTGG-TTTTGAAAGAAAGGCTTTCTTCCCCCCAATTTTTATAAAGTCTGACAT
** * * *
252926 TTTGCCTCAGACGAGACAAATATTGATTCTAGTAATGGCTTTCATTCATTTTGTAATTAGGCACT
709 CGTGCCTCAAACGAGACAAACATTGATTCTAGTAATGGCCTTCATTCATTTTGTAATTAGGCACT
* * *
252991 ATAAACACATTCTTCACATTAGGATAAAGGATAATGATGATTTTTTTTTACATGAAAATCTTTTC
774 ATAAACACATTCTTCACATTAGGATAAAGGATAACGATGATTTTCTTTTGCATGAAAATCTTTTC
* * * * * * * *
253056 TATGCCATATTTACTTTAAAATCAAAGCTTATCCCTTAAATACGACAAGCATCGATTCTCATAAT
839 TTTGCCTTATTTACCTTAAAATCAAAGTTTATCCCTTAAATAAGGCAAGCATCGA-TCTCGTAAC
** * * *
253121 AGTCTCCATTCTTTTCAAGATTGGGAAACAAAAACACATTCCTTTCATTAGC
903 AGTCTCCATTCTTTTCAAGATTCAGAACCAAAAGCACATTCCCTTCATTA-C
* * * * * * **
253173 G-TCCCTGACATTGATGCTTTGGTGATGCAAAATA-CGCTTTCCCTACCA-TCAATTTTGATAGA
1 GATACATGACATTGATGCTTTGGTGACGCAAAATAGAGCTTTTCTTACCACT-GTTTTTGATAGA
* * * * * * * *
253235 ATAAAAGTCTATCTCTTAAATAAGAGAAACTAAAATAGTCAAACTAATCCCTATTTTTTTCAGGA
65 ATCAAAGTTTGTCTCTTAAATTAGAGAAACTAGAATAGTCAAACTAATCACTGTTCTTTTCAGGA
* * *
253300 TTAGGCACCATAAACG-TAGGCTTCTCATAAGGATACACGATATTGATGCTTTGGTTTTTGAAAG
130 TTAGGCACCATAAACGCTAGTCTTCTCATAAGGATATACGATATTGACGCTTTGG-TTTTGAAAG
* * ** ** * *
253364 AAAGGCTTTCTTCTCGCC--AATTTTGTTAAAGTCCGAC-TTTTACCTCAAACGAGACAAATATT
194 AAAGGCTTTTTTC-CACCTAAATTTTG-TAAAGTTTGACATCGTGCCTCAAACGAGACAAACATT
* *
253426 GATTCTAGTAATGGCCTTCATTCATTTTGTAATTAGGCACTATAAACACATTCTTCACATTAGGA
257 GATTCCAGTAATGGCCTTCATTCATTTTGTAATTAGGCACCATAAACACATTCTTCACATTAGGA
* *
253491 TAAAGGATAACGATGATTTTCTTTTGCATGAAAATCTTTTCTTTGCCTTATTTACATTAAAATCA
322 TAAAGGATAATGATGATTTTCTTTTGCATGAAAATCTTTTCTTTGCCTTATTTACCTTAAAATCA
* * *
253556 AAGTTTATCCCTTAAATAAGGCAAGCATCGA--CTCGTAACAGTCTCCATACTTTTCAAGATT-C
387 AAGTTTATCCCTTAAATAAGGCAAGCATCGATTCTCGTAATAGTCTCCATTCTTTTCAAGATTGG
* * * * * *
253618 AGAACCAAAAGCACATTCCCTTCATTAG-GAGACATGACATTGATGCTTTGGTAATGCAAAA-AG
452 A-AAACAAAAACACATTCCTTTCATTAGCG-TACATGACATTGATGCTTTGGTGACGCAAAATA-
* * * * * * *
253681 AGCTTTTCTTGCCACAGTTTTTGATAGAAACAAAGTTTGTCTATTAAATTAGAGAAACTAGAATA
514 CGCTTTTCCTACCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGAGAAACTAGAATA
* * *
253746 GTCAAACTAATCACTGTTCTTTTTC-GGATTAGGCACTATAAACGCT-GTCTTCTCATAAGGATA
579 GTCAAACTAATCCCTGTTC-TTTTCAGGATTAGGCACCATAAAC-ATAGTCTTCTCATAAGGATA
* * * * * * * * *
253809 TACGATATTGACGC-TTGGTTTTGAAAGAAAAGCTTTTTTCCACCTAAATTTTGTAAAGTTTGAC
642 CACGATATTGATGCTTTGGTTTTGAAAGAAAGGCTTTCTTCCCCCCAATTTTTATAAAGTCTGAC
* * * * *
253873 ATCGTGCCTCAAACGAGACAAATATTGATTCCAGTAATAGCCTTCATTCACTTTGTAACTAGGCA
707 ATCGTGCCTCAAACGAGACAAACATTGATTCTAGTAATGGCCTTCATTCATTTTGTAATTAGGC-
* * * * * *
253938 AC-ATAAACATATTCTTCACATTAGGGTAAAGGATAATGAAGATTTTCGTTTGTATGAAAATCTT
771 ACTATAAACACATTCTTCACATTAGGATAAAGGATAACGATGATTTTCTTTTGCATGAAAATCTT
* * * * *
254002 TTCTTTGCCTTATTTACGTTAAAATCAAAGTCTATCCCTTAATTAAGGCAAGAATCGATTCTCTT
836 TTCTTTGCCTTATTTACCTTAAAATCAAAGTTTATCCCTTAAATAAGGCAAGCATCGA-TCTCGT
* * * * * * * * *
254067 AATAGTCTCGACTCTTTTCAAGATT-GGAAAACAAAAACACATTACTTTTATTA-
900 AACAGTCTCCATTCTTTTCAAGATTCAG-AACCAAAAGCACATTCCCTTCATTAC
* * * * * * * *
254120 GCATATATGACATTGATGCTTTGGGGACGTAAAATA-CGTTTTTCCTACAACCGTTTTTGATAGA
1 G-ATACATGACATTGATGCTTTGGTGACGCAAAATAGAGCTTTTCTTACCACTGTTTTTGATAGA
* * * * * * * *
254184 ATCAAAGTTTGTGTATTAAATAAGATAAATTAGAATAGTCAAACTAATCCCTATTCTGTTCAGGA
65 ATCAAAGTTTGTCTCTTAAATTAGAGAAACTAGAATAGTCAAACTAATCACTGTTCTTTTCAGGA
* * * * *
254249 CTAGGCACTATAAAC-ATAGTCTTCTCATAAGGATACACGATATTGACGCTTTGATTTTGAAAGA
130 TTAGGCACCATAAACGCTAGTCTTCTCATAAGGATATACGATATTGACGCTTTGGTTTTGAAAGA
* * * * * * * *
254313 AAGGCTTTCTTCC-CCCAATTTTTATAAAGTCTAACATCGTGCCTCAAATGAGACAAACATTAAT
195 AAGGCTTTTTTCCACCTAAATTTTGTAAAGTTTGACATCGTGCCTCAAACGAGACAAACATTGAT
** * * * *
254377 TCTGGAAATGGCCTTCATTCAATTTGTAATTAGGCACTATAAACACATTCTTCACATCAGGATAA
260 TCCAGTAATGGCCTTCATTCATTTTGTAATTAGGCACCATAAACACATTCTTCACATTAGGATAA
* * * * ** *
254442 AGGATACTGATGATTTTCTTTTACAAGGAAATCTTTTCTACGCCTTATTTACTTTAAAATCAAAG
325 AGGATAATGATGATTTTCTTTTGCATGAAAATCTTTTCTTTGCCTTATTTACCTTAAAATCAAAG
* * * *
254507 CTTATCCCTTAAATAAGACAAGCATCGATTCTCATAATAGTCTCCATTCTTTTCAAGATTGGGAA
390 TTTATCCCTTAAATAAGGCAAGCATCGATTCTCGTAATAGTCTCCATTCTTTTCAAGATTGGAAA
* * * *
254572 ACAAACACACATTCCTTTCATTAGCGTCCCTGACATTGAAGCTTTGGTGACGCAAAATACGCTTT
455 ACAAAAACACATTCCTTTCATTAGCGTACATGACATTGATGCTTTGGTGACGCAAAATACGCTTT
* * * * * * *
254637 TCCTTCCATCATTTTTTATAGAATTAAAGTTTATCTCTTAAATAAGAGAAACTAAAATAGTCAAA
520 TCCTACCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGAGAAACTAGAATAGTCAAA
*
254702 CTAATCCCTGTTCTTTTCAGGATTAGGCACCATAAACATAGGCTTCTCATAAGGATACACGATAT
585 CTAATCCCTGTTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATAAGGATACACGATAT
* *** **
254767 TGATGCTTTGGTTTTTGAAAGAAAGGCTTTCTTTCCGGGAATTTTTATAAAGTCTGAC-TTTTGC
650 TGATGCTTTGG-TTTTGAAAGAAAGGCTTTCTTCCCCCCAATTTTTATAAAGTCTGACATCGTGC
* *
254831 ATCAAACGAGACAAATATTGATTCTAGTAATGGCCTTCATTCATTTTGTAATTAGGCACTAT--A
714 CTCAAACGAGACAAACATTGATTCTAGTAATGGCCTTCATTCATTTTGTAATTAGGCACTATAAA
**
254894 -A-A-----CACATTAGGATAAAGGATAACGATGATTTTCTTTTGCACAAAAATCTTTTCTTTGC
779 CACATTCTTCACATTAGGATAAAGGATAACGATGATTTTCTTTTGCATGAAAATCTTTTCTTTGC
* *
254952 CTT-TTCTACATTAAAATCAAAGTTTATCCCTTAAATAAGGCAAGCATCG-GCTCGTAACAGTCT
844 CTTATT-TACCTTAAAATCAAAGTTTATCCCTTAAATAAGGCAAGCATCGATCTCGTAACAGTCT
* * * *
255015 CCATTCTTTTCAAGATTCAGAACCAAAAGCTCATTCCCCTCACTAG
908 CCATTCTTTTCAAGATTCAGAACCAAAAGCACATTCCCTTCATTAC
* * * ** *
255061 GAGACATGACATTGATGCTTTGGTAACGCAAAA-CGAGCTTTTCTGGCCACTATTTTTGATAGAA
1 GATACATGACATTGATGCTTTGGTGACGCAAAATAGAGCTTTTCTTACCACTGTTTTTGATAGAA
* *
255125 TCACAGTTTGTCTCTTAAGTTAGAGAAACTAGAATAGTCAAACTAATCACTGTTCTTTTCAGGAT
66 TCAAAGTTTGTCTCTTAAATTAGAGAAACTAGAATAGTCAAACTAATCACTGTTCTTTTCAGGAT
* * * *
255190 TAGGAACTATAAACGC-AGTCTTCTCGTAAGGATATACGATATTGATGCTTTGGTTTTGAAAGAA
131 TAGGCACCATAAACGCTAGTCTTCTCATAAGGATATACGATATTGACGCTTTGGTTTTGAAAGAA
* * *
255254 AGGCTTTTTTCCACCTAAATTTTGTAAACTTTGACATCGTGCCTCAAACAAGACAAATATTGATT
196 AGGCTTTTTTCCACCTAAATTTTGTAAAGTTTGACATCGTGCCTCAAACGAGACAAACATTGATT
* * * *
255319 CCAGTAATAGCCTTCATTCACTTTGTAACTAGGCACCATAAACATATTCTTCACATTAGGATAAA
261 CCAGTAATGGCCTTCATTCATTTTGTAATTAGGCACCATAAACACATTCTTCACATTAGGATAAA
* *
255384 GGATAATGATGATTTTCTTTTGCATGAAAAAACTTTTCTTTGCGTTATTTACCTTAAAATCAAAG
326 GGATAATGATGATTTTCTTTTGCATG-AAAATCTTTTCTTTGCCTTATTTACCTTAAAATCAAAG
* * * * * * *
255449 TTTATCCCTTAATTAAGGTAAGAATCGATTCTTGTAACAGTCTCCATTCTTTTTAAGATTGGGAA
390 TTTATCCCTTAAATAAGGCAAGCATCGATTCTCGTAATAGTCTCCATTCTTTTCAAGATTGGAAA
* * * * *
255514 ACAAAAACACAGTCTTTTTATTAGCGTACATGACATTGATGCTTTCGTGACGCAAAATACACTTT
455 ACAAAAACACATTCCTTTCATTAGCGTACATGACATTGATGCTTTGGTGACGCAAAATACGCTTT
* * ** * * * *
255579 TCCTACCACCATTTTTAATAGAAAGAAAGTTTGTCACTTAAATAAGATAAATTAGGATAGTCAAA
520 TCCTACCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGAGAAACTAGAATAGTCAAA
* * * * * *
255644 CTAATCCATGTTCTTTTCAGGATTAGGCACCATGAACACATTCTTGTCATAAGGAAACACGATAT
585 CTAATCCCTGTTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATAAGGATACACGATAT
* * * * ** * *
255709 TGATGCTTTGGTTTTTAAAGAAAGGCTTTCTTCTCGCCAATCTTCGTAATGTCTGACTTC-TGCC
650 TGATGCTTTGGTTTTGAAAGAAAGGCTTTCTTCCCCCCAATTTTTATAAAGTCTGACATCGTGCC
* * * *
255773 ACAAACGAGACAAACATTGATTCTAGTAATGGCCTTCATTCATGTTGTAATTTGGTACTATAAAC
715 TCAAACGAGACAAACATTGATTCTAGTAATGGCCTTCATTCATTTTGTAATTAGGCACTATAAAC
* * * *
255838 ACATTCTTCAAATCAGGATAAAGGATAATGATGATTTTCTTTTGCAAGAAAATCTTTTCTTTGCC
780 ACATTCTTCACATTAGGATAAAGGATAACGATGATTTTCTTTTGCATGAAAATCTTTTCTTTGCC
* * * * *
255903 ATATTTTCCTTAAAAGCAAAGTTTATCCCTCAAATAAGGCAAGCATCGATTCTCGTAACAGTTTC
845 TTATTTACCTTAAAATCAAAGTTTATCCCTTAAATAAGGCAAGCATCGA-TCTCGTAACAGTCTC
* * * * *
255968 CATTCTTGTCAAGATTCAGAACCAAACGCACATTCCTTTCAATAA
909 CATTCTTTTCAAGATTCAGAACCAAAAGCACATTCCCTTCATTAC
* * * * * * *
256013 GAAACATAACATTGCA-GCTTTGGTGATG-AAAACAGAGCTTTTCTTACCACCGTTTTTCATTGA
1 GATACATGACATTG-ATGCTTTGGTGACGCAAAATAGAGCTTTTCTTACCACTGTTTTTGATAGA
* * *
256076 ATCAAAGTTTGTCTCTTAAATTAGAAAAACTAGAATAGTCAAACTAATCACTGTTCTTTCCATGA
65 ATCAAAGTTTGTCTCTTAAATTAGAGAAACTAGAATAGTCAAACTAATCACTGTTCTTTTCAGGA
* * *
256141 TTAGGCACCATAAACGC-AGTCTTCGCATGAGGATATACGATATTAACGCTTTGGTTTTGAAAGA
130 TTAGGCACCATAAACGCTAGTCTTCTCATAAGGATATACGATATTGACGCTTTGGTTTTGAAAGA
* * *
256205 AAAGCTTTTTTCCTCCTAAATTTTGTAAAGTTTGACATCGTGCCTCAAATGAGACAAACATTGAT
195 AAGGCTTTTTTCCACCTAAATTTTGTAAAGTTTGACATCGTGCCTCAAACGAGACAAACATTGAT
256270 TCCAGTAATGGCCTTCATTCATTTTGTAATTAGGCACCATAAACACATTCTTCACATTAGGATAA
260 TCCAGTAATGGCCTTCATTCATTTTGTAATTAGGCACCATAAACACATTCTTCACATTAGGATAA
*
256335 AGGATAATGATGATTTTCGTTTGCATGAAAATCTTTTCTTTGCCTTATTTACCTTAAAATCAAAG
325 AGGATAATGATGATTTTCTTTTGCATGAAAATCTTTTCTTTGCCTTATTTACCTTAAAATCAAAG
* * * *
256400 TTTATCCCTTAATTAAGGCAAGAATCGATTCTCGTAATAGTCTCCACTCTTTTCAGGATTGGAAA
390 TTTATCCCTTAAATAAGGCAAGCATCGATTCTCGTAATAGTCTCCATTCTTTTCAAGATTGGAAA
* * * * * **
256465 ACAAAAACACAATCCTTTTATTAGCGTACCTGACATTGACGCTTTGGGGACGCAAAATACATTTT
455 ACAAAAACACATTCCTTTCATTAGCGTACATGACATTGATGCTTTGGTGACGCAAAATACGCTTT
* * * *
256530 TCCTACTACTGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGATAAATTAGAATAGTCAAA
520 TCCTACCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGAGAAACTAGAATAGTCAAA
* * *
256595 CTAATCCCTGTT-TTCTTCAGGACTAAGCACCATAAACATAATCTTCTCAT-AGAGATACACGAT
585 CTAATCCCTGTTCTT-TTCAGGATTAGGCACCATAAACATAGTCTTCTCATAAG-GATACACGAT
* * *
256658 ATTGATACTTTGATTTTGAAAGAAAGGCTTTCTTCCCCCCAATTTTTATAAAGTCTAACATCGTG
648 ATTGATGCTTTGGTTTTGAAAGAAAGGCTTTCTTCCCCCCAATTTTTATAAAGTCTGACATCGTG
* * * * *
256723 CCTCAAATGAGACAAACACTGATTCTGGAAATGGCCTTCATTCAATTTGTAATTAGGCACTATAA
713 CCTCAAACGAGACAAACATTGATTCTAGTAATGGCCTTCATTCATTTTGTAATTAGGCACTATAA
** *
256788 ACACATTCTTCACATTAGGATAAAGGATAACGATGATTTTCTTTTGCATGAAAATCGCTTCTTTC
778 ACACATTCTTCACATTAGGATAAAGGATAACGATGATTTTCTTTTGCATGAAAATCTTTTCTTTG
* * * *
256853 CCTTGTTTACATTAAAATCAAAGTTTATCCCTTAAATAAGGCAAGCATCG-GCTCATAACAGTCT
843 CCTTATTTACCTTAAAATCAAAGTTTATCCCTTAAATAAGGCAAGCATCGATCTCGTAACAGTCT
* * *
256917 CTATTCTTTTCAAGATTTAGAACCAAAAGCACATTCCCTTCATTAG
908 CCATTCTTTTCAAGATTCAGAACCAAAAGCACATTCCCTTCATTAC
* * * *
256963 GATACATGACACTGATGCTTTGGTAACGCAAAA-AGAGCTTTTCTTGCCACTATTTTTGATAGAA
1 GATACATGACATTGATGCTTTGGTGACGCAAAATAGAGCTTTTCTTACCACTGTTTTTGATAGAA
* * * *
257027 TCAACGTTTATCTCTTAAATTAGAGAAACTAGAATAGTTAAACTAATCACTGTTCTTTTCAAGAT
66 TCAAAGTTTGTCTCTTAAATTAGAGAAACTAGAATAGTCAAACTAATCACTGTTCTTTTCAGGAT
* *
257092 TAGGCACCATAAACGC-AGTCTTCTCATAAGGATATACGATATTGACGCTTTAGTTTTGGAAGAA
131 TAGGCACCATAAACGCTAGTCTTCTCATAAGGATATACGATATTGACGCTTTGGTTTTGAAAGAA
* * * *
257156 AGGCTTTTTTTCACCTAAATTTTGTAAAGTGTGACATCGGGCCTCAAACGAGACAAATATTGATT
196 AGGCTTTTTTCCACCTAAATTTTGTAAAGTTTGACATCGTGCCTCAAACGAGACAAACATTGATT
* * * *
257221 CCAGTAATAGCCTTCATTCACTTTGTAATTAGGCACCATAAACACTTTCTTCACATTAAGATAAA
261 CCAGTAATGGCCTTCATTCATTTTGTAATTAGGCACCATAAACACATTCTTCACATTAGGATAAA
* *
257286 GGATAATGATGATTTTCTTTTGCACGAAAATCTTTTCTTTGCCTTATTTACCGTAAAATCAAAGT
326 GGATAATGATGATTTTCTTTTGCATGAAAATCTTTTCTTTGCCTTATTTACCTTAAAATCAAAGT
* * * * * * * *
257351 TTATCCCTCAATTAAGGTAAGAATCGATTCTCGTAACAGTTTCCATTCTTTTGAAGATTGGGAAA
391 TTATCCCTTAAATAAGGCAAGCATCGATTCTCGTAATAGTCTCCATTCTTTTCAAGATTGGAAAA
* * * *
257416 CAAAAACACAGTCCTTTTATTAGCATACATGACATTGATGCTTTGGTGACGCAAAATACACTTTT
456 CAAAAACACATTCCTTTCATTAGCGTACATGACATTGATGCTTTGGTGACGCAAAATACGCTTTT
* * *
257481 CCTACCACCGTGTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGATAAATTAGAATAGTCAAAC
521 CCTACCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGAGAAACTAGAATAGTCAAAC
* * * * *
257546 TAATCCTTGTTCTTTTCAGGATTAGGCACCATGAATATAGTCTTGTCATAAGGATACCCGATATT
586 TAATCCCTGTTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATAAGGATACACGATATT
* * * * * *
257611 GATGCTTTGGTTTTGAAAGAAAGGCTTTCTTCTCACCAATCTTTGTAATGTCTGACTTC-TGCCT
651 GATGCTTTGGTTTTGAAAGAAAGGCTTTCTTCCCCCCAATTTTTATAAAGTCTGACATCGTGCCT
* * *
257675 CAAACGAGACAAACATTGATTCTAGTAATGGCTTTCATTCATTCTGTAATTAGGCACTTTAAACA
716 CAAACGAGACAAACATTGATTCTAGTAATGGCCTTCATTCATTTTGTAATTAGGCACTATAAACA
* * * *
257740 CATTCTTCACATTAGGATAATGGATAACGATGATTTTCTTTTGCAAGAAAATCTTTTCCTTGCCA
781 CATTCTTCACATTAGGATAAAGGATAACGATGATTTTCTTTTGCATGAAAATCTTTTCTTTGCCT
* * *
257805 TATTTACCTTAAAATCAAAGTTTATCCCTTAAATAAGGCAAGCATTGATTCTCGCAACAATCTCC
846 TATTTACCTTAAAATCAAAGTTTATCCCTTAAATAAGGCAAGCATCGA-TCTCGTAACAGTCTCC
* *
257870 ATTCTTTTCAAGATTCAGAGCCAAAAGCACATTCCCTTCATTAT
910 ATTCTTTTCAAGATTCAGAACCAAAAGCACATTCCCTTCATTAC
* * * * * * ** *
257914 GATGCATGGCATTGCTGCTTCGGTGACGC-AAACAGAGCTTTTCTTGCCA-TCGTTTTTCTTTGA
1 GATACATGACATTGATGCTTTGGTGACGCAAAATAGAGCTTTTCTTACCACT-GTTTTTGATAGA
* *
257977 ATCAAAGTTTGTCTCTTAAATTAGAAAAACTAGAATAGTCAAACTAATCACTGTTCTTTTCAAGA
65 ATCAAAGTTTGTCTCTTAAATTAGAGAAACTAGAATAGTCAAACTAATCACTGTTCTTTTCAGGA
* * *
258042 TTAGGCACTATAAAC-ATAGTCTTCTCATATGGATATACGATATTGACGCTTTGGTTTTGAAAGC
130 TTAGGCACCATAAACGCTAGTCTTCTCATAAGGATATACGATATTGACGCTTTGGTTTTGAAAG-
* * *
258106 AAA-GCTTTTTTCCACCTACATTTTGTAAAGTTTGACTTCGTGCCTCAAACGTGACAAACATTGA
194 AAAGGCTTTTTTCCACCTAAATTTTGTAAAGTTTGACATCGTGCCTCAAACGAGACAAACATTGA
* ** *
258170 TTCCAGCAATGGCCTTCATTCATTTTGTTGTTAGGCACCATAAACACATTCTTCACGTTAGGATA
259 TTCCAGTAATGGCCTTCATTCATTTTGTAATTAGGCACCATAAACACATTCTTCACATTAGGATA
*
258235 AAGGATAATGATGATTTTCGTTTGCATGAAAATCTTTTCTTTGCCTTATTTACCTTAAAATCAAA
324 AAGGATAATGATGATTTTCTTTTGCATGAAAATCTTTTCTTTGCCTTATTTACCTTAAAATCAAA
* * * * * * * *
258300 GATTATCCCTTAATTAAGGCAAGAATCAATTCTCATAATATTCCCCACTCTTTTCAAGATTGGAA
389 GTTTATCCCTTAAATAAGGCAAGCATCGATTCTCGTAATAGTCTCCATTCTTTTCAAGATTGGAA
* * * * *
258365 AACAAAAACACATTCCTTTTATTAGCGTGCATGACA-TAATGCTTTGGGGACGCAAAATACGTTT
454 AACAAAAACACATTCCTTTCATTAGCGTACATGACATTGATGCTTTGGTGACGCAAAATACGCTT
* * *
258429 TTCCTACTACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGATAAATTAGAATAGTCAA
519 TTCCTACCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGAGAAACTAGAATAGTCAA
* *
258494 ACTAATCCCTGTT-TTGTTAAGGATTAGGCA-C-TATACATAGTCTTCTCATAAGGATACACGAT
584 ACTAATCCCTGTTCTT-TTCAGGATTAGGCACCATAAACATAGTCTTCTCATAAGGATACACGAT
*
258556 ATTGATGCTTTGATTTTGAAAGAAAGGCTTTCTTCCCCCCAATTTTTATAAAGTCT
648 ATTGATGCTTTGGTTTTGAAAGAAAGGCTTTCTTCCCCCCAATTTTTATAAAGTCT
258612 AATGATGACA
Statistics
Matches: 12912, Mismatches: 1760, Indels: 490
0.85 0.12 0.03
Matches are distributed among these distances:
930 2 0.00
931 36 0.00
932 522 0.04
933 198 0.02
934 35 0.00
935 13 0.00
939 6 0.00
940 453 0.04
941 910 0.07
942 770 0.06
943 251 0.02
944 9 0.00
945 1 0.00
946 2 0.00
947 32 0.00
948 787 0.06
949 1584 0.12
950 2954 0.23
951 1550 0.12
952 1075 0.08
953 818 0.06
954 60 0.00
955 124 0.01
956 34 0.00
957 206 0.02
958 476 0.04
959 4 0.00
ACGTcount: A:0.33, C:0.19, G:0.14, T:0.34
Consensus pattern (953 bp):
GATACATGACATTGATGCTTTGGTGACGCAAAATAGAGCTTTTCTTACCACTGTTTTTGATAGAA
TCAAAGTTTGTCTCTTAAATTAGAGAAACTAGAATAGTCAAACTAATCACTGTTCTTTTCAGGAT
TAGGCACCATAAACGCTAGTCTTCTCATAAGGATATACGATATTGACGCTTTGGTTTTGAAAGAA
AGGCTTTTTTCCACCTAAATTTTGTAAAGTTTGACATCGTGCCTCAAACGAGACAAACATTGATT
CCAGTAATGGCCTTCATTCATTTTGTAATTAGGCACCATAAACACATTCTTCACATTAGGATAAA
GGATAATGATGATTTTCTTTTGCATGAAAATCTTTTCTTTGCCTTATTTACCTTAAAATCAAAGT
TTATCCCTTAAATAAGGCAAGCATCGATTCTCGTAATAGTCTCCATTCTTTTCAAGATTGGAAAA
CAAAAACACATTCCTTTCATTAGCGTACATGACATTGATGCTTTGGTGACGCAAAATACGCTTTT
CCTACCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGAGAAACTAGAATAGTCAAAC
TAATCCCTGTTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATAAGGATACACGATATT
GATGCTTTGGTTTTGAAAGAAAGGCTTTCTTCCCCCCAATTTTTATAAAGTCTGACATCGTGCCT
CAAACGAGACAAACATTGATTCTAGTAATGGCCTTCATTCATTTTGTAATTAGGCACTATAAACA
CATTCTTCACATTAGGATAAAGGATAACGATGATTTTCTTTTGCATGAAAATCTTTTCTTTGCCT
TATTTACCTTAAAATCAAAGTTTATCCCTTAAATAAGGCAAGCATCGATCTCGTAACAGTCTCCA
TTCTTTTCAAGATTCAGAACCAAAAGCACATTCCCTTCATTAC
Found at i:263112 original size:15 final size:15
Alignment explanation
Indices: 263094--263147 Score: 54
Period size: 15 Copynumber: 3.4 Consensus size: 15
263084 CTTCTTCTCT
*
263094 CCTCCTCCTGTCATC
1 CCTCCTCCTATCATC
*
263109 CCTCCTCTCTCTATTATC
1 CCT-C-CTC-CTATCATC
*
263127 TCTCCTCCTATCATC
1 CCTCCTCCTATCATC
263142 CCTCCT
1 CCTCCT
263148 ATCTCTACTA
Statistics
Matches: 31, Mismatches: 5, Indels: 6
0.74 0.12 0.14
Matches are distributed among these distances:
15 15 0.48
16 4 0.13
17 4 0.13
18 8 0.26
ACGTcount: A:0.09, C:0.50, G:0.02, T:0.39
Consensus pattern (15 bp):
CCTCCTCCTATCATC
Found at i:263131 original size:18 final size:18
Alignment explanation
Indices: 263110--263171 Score: 58
Period size: 18 Copynumber: 3.6 Consensus size: 18
263100 CCTGTCATCC
263110 CTCCTCTCTCTATTATCT
1 CTCCTCTCTCTATTATCT
* *
263128 CT-C-CTC-CTATCATCC
1 CTCCTCTCTCTATTATCT
* *
263143 CTCCTATCTCTACTATCT
1 CTCCTCTCTCTATTATCT
*
263161 CTCCTGTCTCT
1 CTCCTCTCTCT
263172 CCTCCTATCA
Statistics
Matches: 34, Mismatches: 7, Indels: 6
0.72 0.15 0.13
Matches are distributed among these distances:
15 9 0.26
16 4 0.12
17 3 0.09
18 18 0.53
ACGTcount: A:0.11, C:0.44, G:0.02, T:0.44
Consensus pattern (18 bp):
CTCCTCTCTCTATTATCT
Found at i:263141 original size:33 final size:33
Alignment explanation
Indices: 263095--263165 Score: 115
Period size: 33 Copynumber: 2.2 Consensus size: 33
263085 TTCTTCTCTC
* * *
263095 CTCCTCCTGTCATCCCTCCTCTCTCTATTATCT
1 CTCCTCCTATCATCCCTCCTATCTCTACTATCT
263128 CTCCTCCTATCATCCCTCCTATCTCTACTATCT
1 CTCCTCCTATCATCCCTCCTATCTCTACTATCT
263161 CTCCT
1 CTCCT
263166 GTCTCTCCTC
Statistics
Matches: 35, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
33 35 1.00
ACGTcount: A:0.11, C:0.46, G:0.01, T:0.41
Consensus pattern (33 bp):
CTCCTCCTATCATCCCTCCTATCTCTACTATCT
Found at i:263145 original size:12 final size:11
Alignment explanation
Indices: 263123--263194 Score: 53
Period size: 12 Copynumber: 6.5 Consensus size: 11
263113 CTCTCTCTAT
263123 TATCTCTCCTCC
1 TATCTC-CCTCC
263135 TATCATCCCTCC
1 TATC-TCCCTCC
*
263147 TATCT--CTAC
1 TATCTCCCTCC
263156 TATCT--CTCC
1 TATCTCCCTCC
*
263165 TGTCTCTCCTCC
1 TATCTC-CCTCC
263177 TATCATCCCTCC
1 TATC-TCCCTCC
*
263189 TCTCTC
1 TATCTC
263195 TTCTTTCTCT
Statistics
Matches: 50, Mismatches: 5, Indels: 11
0.76 0.08 0.17
Matches are distributed among these distances:
9 15 0.30
11 3 0.06
12 28 0.56
13 4 0.08
ACGTcount: A:0.11, C:0.47, G:0.01, T:0.40
Consensus pattern (11 bp):
TATCTCCCTCC
Found at i:263171 original size:42 final size:42
Alignment explanation
Indices: 263125--263204 Score: 133
Period size: 42 Copynumber: 1.9 Consensus size: 42
263115 CTCTCTATTA
263125 TCTCTCCTCCTATCATCCCTCCTATCTCTACTATCTCTCCTG
1 TCTCTCCTCCTATCATCCCTCCTATCTCTACTATCTCTCCTG
* * *
263167 TCTCTCCTCCTATCATCCCTCCTCTCTCTTCTTTCTCT
1 TCTCTCCTCCTATCATCCCTCCTATCTCTACTATCTCT
263205 TTGAGGGCTA
Statistics
Matches: 35, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
42 35 1.00
ACGTcount: A:0.09, C:0.46, G:0.01, T:0.44
Consensus pattern (42 bp):
TCTCTCCTCCTATCATCCCTCCTATCTCTACTATCTCTCCTG
Found at i:266870 original size:476 final size:475
Alignment explanation
Indices: 265844--267929 Score: 2639
Period size: 476 Copynumber: 4.4 Consensus size: 475
265834 AAGGATGTAC
* * *
265844 GATAATGATGACTTTCTTTTGCATGAAAATCTTTTCATTGCAATATTTACCTTAAAATCAAAGTT
1 GATAATGATGATTTTCTTTTGCATGAAAATCTTTTCCTTGCCATATTTACCTTAAAATCAAAGTT
* * * * * * * * *
265909 TATCCCTTAATTAAGGTAAGAATCGATTATCGTAATAGTTTCCATTCTTTTCAAGATTGGGTAAC
66 TATCCCTTAAATAAGGCAAGCATCGATTCTTGCAATAGTCTCCATTCTTTTCAAGATTCGGAAAC
* * * * * * *
265974 AAAAACATAGTCCTTTTATTAGCGTACATGACATTGATGCTTTGGTGACGCAAA-ATACACTTTT
131 AAAAACACATTCCTTCTATTAGCATACATGACATTGATGCTTTGGTGATGCAAACAGA-GCTTTT
* * * * *
266038 CCTACCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGATAAATTAGAATAGTCAAAC
195 CTTACCACCGTTTTTCATAGAATCAAAGTTTGTCTCTTAAATTAGAAAAACTAGAATAGTCAAAC
* * *
266103 TAA-TCCATGTTCTTTTCAAGATTAGGCACCATGAACGTAGTCTTATCATAAGGATACACGATAT
260 TAATTAC-TGTTCTTTTCAAGATTAGGCACCATAAACGTAGTCTTCTCATAAGGATACACGATAT
** * *
266167 TGATTCTTTGGTTTTGAAAGAAAGGCTTTCTTCTCGCC--AATCTTTGTAATGTCTGACTTC-TG
324 TGACGCTTTGGTTTTGAAAGAAAGGCTTT-TTC-CACCTAAAT-TTTGTAAAGTCTGACTTCGTG
* * *
266229 CCTCAAAAGAGAAAAACATTGATTCTAGTAATGGCCTTCATTCATTTTGTAATTAGGCACTATAA
386 CCTCAAACGAGACAAACATTGATTCCAGTAATGGCCTTCATTCATTTTGTAATTAGGCACTATAA
*
266294 ACAAATTCTTCACATTAGGATAATG
451 ACAAATTCTTCACATTAGGATAAAG
*
266319 GATAACGATGATTTTCTTTTGCATGAAAATCTTTTCCTTGCCATATTTACCTTAAAATCAAAGTT
1 GATAATGATGATTTTCTTTTGCATGAAAATCTTTTCCTTGCCATATTTACCTTAAAATCAAAGTT
* * *
266384 TATCTCTTAAATAAGGCAAGCATCGATTCTTGCAACAGTCTCCTTTCTTTTCAAGATTCGG-AAC
66 TATCCCTTAAATAAGGCAAGCATCGATTCTTGCAATAGTCTCCATTCTTTTCAAGATTCGGAAAC
* * *
266448 GAGAAACACATTCCCTCTATTAAG-ATACATGACATTGCTGCTTTGGTGATGCAAACAGAGCTTT
131 -AAAAACACATTCCTTCTATT-AGCATACATGACATTGATGCTTTGGTGATGCAAACAGAGCTTT
* * *
266512 TCTTACCACCATTTTTCTTTGAATCAAAGTTTGTCTCTTAAATTAGAAAAACTAGAATAGTCAAA
194 TCTTACCACCGTTTTTCATAGAATCAAAGTTTGTCTCTTAAATTAGAAAAACTAGAATAGTCAAA
* * * * * * *
266577 CAAATTACTGTTCTTTTTAGGATTAGGCACCATAAACATAGTCTTCTCATAAGGAAATACGATAA
259 CTAATTACTGTTCTTTTCAAGATTAGGCACCATAAACGTAGTCTTCTCATAAGGATACACGATAT
* * * * *
266642 TGACCCTTTGGTTTTGAAAGAAAAGCTGTTTTCCACCTAAAGTTTGTAAAGTTTGACTTCATGCC
324 TGACGCTTTGGTTTTGAAAGAAAGGCT-TTTTCCACCTAAATTTTGTAAAGTCTGACTTCGTGCC
* *
266707 TCAACCGTGACAAACATTGATTCCAGTAATGGCCTTCATTCATTTTGTAATTAGGCACTATAAAC
388 TCAAACGAGACAAACATTGATTCCAGTAATGGCCTTCATTCATTTTGTAATTAGGCACTATAAAC
266772 AAATTCTTCACATTAGGATAAAG
453 AAATTCTTCACATTAGGATAAAG
* *
266795 GATAACGATGATTTTCTTTTGCAAGAAAATCTTTTCCTTGCCATATTTACCTTAAAATCAAAGTT
1 GATAATGATGATTTTCTTTTGCATGAAAATCTTTTCCTTGCCATATTTACCTTAAAATCAAAGTT
* * * * * *
266860 TATCTCTTAAATAAGGCAAGCATCGATTCTTGCAACAGTCTCCTTTATTTTCAAGATTCAGAACC
66 TATCCCTTAAATAAGGCAAGCATCGATTCTTGCAATAGTCTCCATTCTTTTCAAGATTCGGAAAC
* * * * * *
266925 AAAAGCACATTCCAAT-GATTAAG-ATACATTG-CATTGCTACTTTGGTGATGCAAACAAAGCTT
131 AAAAACACATTCC-TTCTATT-AGCATACA-TGACATTGATGCTTTGGTGATGCAAACAGAGCTT
* * * *
266987 CTCTTACCACCGTTTTTCTTTGAATCAAAGTTTGTCTCTTAAATTAGAAAAACTGGAATAGTCAA
193 TTCTTACCACCGTTTTTCATAGAATCAAAGTTTGTCTCTTAAATTAGAAAAACTAGAATAGTCAA
* * * *
267052 ACTAATTACTGTTCTTTTCAGGATTAGGCACCCTAAACGTGGTCTTCTCATAAGGATACAAGATA
258 ACTAATTACTGTTCTTTTCAAGATTAGGCACCATAAACGTAGTCTTCTCATAAGGATACACGATA
* * *
267117 TTGACGCTTTTGTTTTGAAAGAAAGGCTTCCTTCCACCCAAATTTTGTAAAGTCTGACTTCGTGC
323 TTGACGCTTTGGTTTTGAAAGAAAGGCTT-TTTCCACCTAAATTTTGTAAAGTCTGACTTCGTGC
* ** * * * *
267182 CTCAAACGAGACATATGTTGATTCTAGTAATAGCCTTTATTCATTTCGTAATTAGGCACTATAAA
387 CTCAAACGAGACAAACATTGATTCCAGTAATGGCCTTCATTCATTTTGTAATTAGGCACTATAAA
* * *
267247 CATATTTTTCACATTAGGATAAAC
452 CAAATTCTTCACATTAGGATAAAG
* * ** * * ***
267271 AATAATGATGATTTTCTTTTACATGAAAATCTTTTGTTTGTCTTATTTTTATTAAAATCAAAGTT
1 GATAATGATGATTTTCTTTTGCATGAAAATCTTTTCCTTGCCATATTTACCTTAAAATCAAAGTT
* * * * * *
267336 CATCCCTTAAATAAAGCAGGCATCGATTC-TCCTAATAATCTCCATTCTTTTCAAGATTAGGAAA
66 TATCCCTTAAATAAGGCAAGCATCGATTCTTGC-AATAGTCTCCATTCTTTTCAAGATTCGGAAA
* * * * *
267400 CAAAAACACATTCCTTCCATTAGCGTACATAACATTGATGCTTTGGTGATGCAAAAAGAGGTTTT
130 CAAAAACACATTCCTTCTATTAGCATACATGACATTGATGCTTTGGTGATGCAAACAGAGCTTTT
* * * * *
267465 CTTACCATCGTTTTTGATAGAATCAAAGTTTGTCTCTCAAATTAGACAAACTAGAATAGTTAAAC
195 CTTACCACCGTTTTTCATAGAATCAAAGTTTGTCTCTTAAATTAGAAAAACTAGAATAGTCAAAC
* * * *
267530 TAATCACTGTTCTTTTCAAGATTAGGCACCATAAATGCAGTCTTCTCATAAGGATATACGATATT
260 TAATTACTGTTCTTTTCAAGATTAGGCACCATAAACGTAGTCTTCTCATAAGGATACACGATATT
* * *
267595 GATGCTTTGGTTTTGAAAGAAAGGCTTTTTTCCACCTAAATTTTGTAAAGTTTGACATCGTGCCT
325 GACGCTTTGGTTTTGAAAGAAAGGC-TTTTTCCACCTAAATTTTGTAAAGTCTGACTTCGTGCCT
*
267660 CAAACGAGACAAACATTGATT-CAGTAATGGCCTTCATTCATTTTGTAATTAGGCACCATAAACA
389 CAAACGAGACAAACATTGATTCCAGTAATGGCCTTCATTCATTTTGTAATTAGGCACTATAAACA
* **
267724 CATTCTTTTCATTAGGATAAAG
454 AATTCTTCACATTAGGATAAAG
* ** * *
267746 GATAATGATGATTTTCTTTTGCAAGAAAATCTTTTATTTACCTTATTTACCTTAAAATCAAAGTT
1 GATAATGATGATTTTCTTTTGCATGAAAATCTTTTCCTTGCCATATTTACCTTAAAATCAAAGTT
* * ** * * * *
267811 TATCCCTTAATTAAGGAAAAAATTGATTCTCGTAATAGTCTCCATTCTTTTCAAGATTGGGAAAC
66 TATCCCTTAAATAAGGCAAGCATCGATTCTTGCAATAGTCTCCATTCTTTTCAAGATTCGGAAAC
* * * *
267876 AAAAACATAGTCCTTTTATTAGCCTACATGACATTGATGCTTTGGTGATGCAAA
131 AAAAACACATTCCTTCTATTAGCATACATGACATTGATGCTTTGGTGATGCAAA
267930 ATACACTTTT
Statistics
Matches: 1398, Mismatches: 195, Indels: 36
0.86 0.12 0.02
Matches are distributed among these distances:
474 6 0.00
475 527 0.38
476 858 0.61
477 7 0.01
ACGTcount: A:0.33, C:0.18, G:0.14, T:0.36
Consensus pattern (475 bp):
GATAATGATGATTTTCTTTTGCATGAAAATCTTTTCCTTGCCATATTTACCTTAAAATCAAAGTT
TATCCCTTAAATAAGGCAAGCATCGATTCTTGCAATAGTCTCCATTCTTTTCAAGATTCGGAAAC
AAAAACACATTCCTTCTATTAGCATACATGACATTGATGCTTTGGTGATGCAAACAGAGCTTTTC
TTACCACCGTTTTTCATAGAATCAAAGTTTGTCTCTTAAATTAGAAAAACTAGAATAGTCAAACT
AATTACTGTTCTTTTCAAGATTAGGCACCATAAACGTAGTCTTCTCATAAGGATACACGATATTG
ACGCTTTGGTTTTGAAAGAAAGGCTTTTTCCACCTAAATTTTGTAAAGTCTGACTTCGTGCCTCA
AACGAGACAAACATTGATTCCAGTAATGGCCTTCATTCATTTTGTAATTAGGCACTATAAACAAA
TTCTTCACATTAGGATAAAG
Found at i:272268 original size:16 final size:16
Alignment explanation
Indices: 272247--272280 Score: 52
Period size: 16 Copynumber: 2.1 Consensus size: 16
272237 TTCCGATGGC
272247 CCCTCTCATGAAAC-TA
1 CCCTCTCAT-AAACATA
272263 CCCTCTCATAAACATA
1 CCCTCTCATAAACATA
272279 CC
1 CC
272281 TGAGGTGCAT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 4 0.24
16 13 0.76
ACGTcount: A:0.32, C:0.41, G:0.03, T:0.24
Consensus pattern (16 bp):
CCCTCTCATAAACATA
Found at i:274297 original size:33 final size:32
Alignment explanation
Indices: 274239--274302 Score: 101
Period size: 33 Copynumber: 2.0 Consensus size: 32
274229 TAACTGTTTG
* *
274239 TATCGATACATACGAGATGTATCGATACATTA
1 TATCGATACATACCAAATGTATCGATACATTA
274271 TATCGATACATGACCAAATGTATCGATACATT
1 TATCGATACAT-ACCAAATGTATCGATACATT
274303 GGCTTGTAAC
Statistics
Matches: 29, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
32 11 0.38
33 18 0.62
ACGTcount: A:0.38, C:0.17, G:0.14, T:0.31
Consensus pattern (32 bp):
TATCGATACATACCAAATGTATCGATACATTA
Found at i:276170 original size:475 final size:474
Alignment explanation
Indices: 275027--280097 Score: 6829
Period size: 475 Copynumber: 10.7 Consensus size: 474
275017 TTGAGCTTTC
* *
275027 AGGCACCATAAACGCAGTCTTCT-ATTAAGGATATACGATATTGATGCTTTGGTTTTGAAAGAAA
1 AGGCACCATAAACGTAGTCTTCTCA-TAAGGATACACGATATTGATGCTTTGGTTTTGAAAGAAA
* * * *
275091 GTCTTTCTTCCACCTAATTTTTGTAAAGTCTGACATTGCGCCTCAAACGAGGCAAACATTGATTC
65 GGCTTTCTTCC-CCTAATTTTTGTAAAGTCTGACATCGTGCCTCAAACGAGACAAACATTGATTC
* * **
275156 CAGTAATGGCCTTCATTCATTTTGTAATTGGGCACTACGAACACATTCTTCACATTAGGATAAAG
129 TAGTAATGGCCTTCATTCATTTTGTAATTAGGCACTATAAACACATTCTTCACATTAGGATAAAG
*
275221 GATAATGATGATTTTCTTTTGCATGAAAATCTTTTCTTTGCCTTATTTACCTTAAAATCAAAGTT
194 GATAATGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCTTATTTACCTTAAAATCAAAGTT
* * **
275286 TATCCCTTAATTAAGGCAAGAATCGATTCTCGTAACGGTCTCCATTCTTTTCAAGATTGGGAAAC
259 TATCCCTTAAATAAGGCAAGCATCGATTCTCGTAATAGTCTCCATTCTTTTCAAGATTGGGAAAC
* * * * *
275351 AAAAACACAGTCCTTTTATTAGCGTACATGACATTGATGCTTTGGTGACGCAAAATTCACTCTAC
324 AAAAACACATTCCTTTCATTAGCGTACATGACATTGATGCTTTGGTGACGCAAAA-TAACTTTTC
* * *
275416 CTACCACCGTTTTTGATAG-ATCAAAGTTGGTCTCTTAAATAAGAAAAATTGGAATAGTCAAACT
388 CTACCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGAAAAACTAGAATAGTCAAACT
*
275480 AATCCCTATTCTTTTCAGGATT
453 AATCCCTGTTCTTTTCAGGATT
* * * *
275502 AGGCACCATGAACGTAGTCTTGTCATAAGGATACACGATATTAAAGCTTTGGTTTTGAAAGAAAG
1 AGGCACCATAAACGTAGTCTTCTCATAAGGATACACGATATTGATGCTTTGGTTTTGAAAGAAAG
* * *
275567 GCTTTCTTCTGGCC-AATTTTTGTAATGTCTGACTTC-TGCCTCAAACGAGACAAACATTGATTC
66 GCTTTCTTC--CCCTAATTTTTGTAAAGTCTGACATCGTGCCTCAAACGAGACAAACATTGATTC
275630 TAGTAATGGCCTTCATTCATTTTGTAATTAGGCACTATAAACACATTCTTCACATTAGGATAAAG
129 TAGTAATGGCCTTCATTCATTTTGTAATTAGGCACTATAAACACATTCTTCACATTAGGATAAAG
* * * *
275695 GATAACGATGATTTTCTTTTGCAAGGAAATCTTTTCTTTGACTTATTTACCTTAAAATCAAAATT
194 GATAATGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCTTATTTACCTTAAAATCAAAGTT
* * * * *
275760 TATCCCTTAAATAAGGCAAGTATCGATTCTCATAACAGTCTCCATTCTTTTCAAGATTCGGAACC
259 TATCCCTTAAATAAGGCAAGCATCGATTCTCGTAATAGTCTCCATTCTTTTCAAGATTGGGAAAC
* ** * * *
275825 AAAAGCACATTCCTTTCATTAGTATACATGACATTGATGCTTTGGTGACGCAAACAGAGCTGTTC
324 AAAAACACATTCCTTTCATTAGCGTACATGACATTGATGCTTTGGTGACGCAAA-ATAACTTTTC
* * * *
275890 TTACCACCGTTTTTCATTGAATCAAAGTTTGTCTCTTAAATTAGAAAAACTAGAATAGTCAAACT
388 CTACCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGAAAAACTAGAATAGTCAAACT
*
275955 AATCACTGTTCTTTTCAGGATT
453 AATCCCTGTTCTTTTCAGGATT
* * * * *
275977 AGGCACCGTAAATGCAGTCTTCTCATAAGGATATACGATATTGACGCTTTGGTTTTGAAAGAAAG
1 AGGCACCATAAACGTAGTCTTCTCATAAGGATACACGATATTGATGCTTTGGTTTTGAAAGAAAG
* * *
276042 GCTTTTTTCCACCTAAATTTTGTAAAGTTTGACATCGTGCCTCAAACGAGACAAACATTGATTC-
66 GCTTTCTTCC-CCTAATTTTTGTAAAGTCTGACATCGTGCCTCAAACGAGACAAACATTGATTCT
* * **
276106 AGTAATGGCCTTCATTTATTTTGTAATTAGGCACCATAAACACATTCTTTTCATTAGGATAAAGG
130 AGTAATGGCCTTCATTCATTTTGTAATTAGGCACTATAAACACATTCTTCACATTAGGATAAAGG
* * * *
276171 ATAATGATGATTTTCTTTTGCAAGAAAATCTTTTATTTACCTTATTTACCTTAAAATCAAAGTTT
195 ATAATGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCTTATTTACCTTAAAATCAAAGTTT
* * * * *
276236 ATCCCTTAATTAAGGAAAGAATCGATTCTTGTAACAGTCTCCATTCTTTTCAAGATTGGGAAACA
260 ATCCCTTAAATAAGGCAAGCATCGATTCTCGTAATAGTCTCCATTCTTTTCAAGATTGGGAAACA
** * * * * *
276301 AAAACGTAGTCCTTTTATTAGCCTGCATGACATTGATGCTTTGGTGATGCAAAATACACTTTTCC
325 AAAACACATTCCTTTCATTAGCGTACATGACATTGATGCTTTGGTGACGCAAAATA-ACTTTTCC
* * * *
276366 TACCACCGTTTTAGATAGAATCAAAGTTTGTCTCTTAAACAAGAAAAATTAGAATAATCAAACTA
389 TACCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGAAAAACTAGAATAGTCAAACTA
276431 ATCCCTGTTCTTTTCAGGATT
454 ATCCCTGTTCTTTTCAGGATT
* * * * * *
276452 TGGCACTATGAACATAGTCTTTTCATAAGGATACACGATATTAATGCTTTGGTTTTGAAAGAAAG
1 AGGCACCATAAACGTAGTCTTCTCATAAGGATACACGATATTGATGCTTTGGTTTTGAAAGAAAG
** * * * *
276517 GCTTTCTTTTGGCC-AATTTTTGTAATGTCTGACTTC-TACCTCAAACAAGACAAACATTGATTC
66 GCTTTC--TTCCCCTAATTTTTGTAAAGTCTGACATCGTGCCTCAAACGAGACAAACATTGATTC
*
276580 TAGTAATGGCCTTCATTCATTTTGTAATTAGGCATTATAAACACATTCTTCACATTAGGATAAAG
129 TAGTAATGGCCTTCATTCATTTTGTAATTAGGCACTATAAACACATTCTTCACATTAGGATAAAG
* * * *
276645 GATAATGATGATTTTCTTTTACAAGGAAATCTTTTTTTTGCCTTATTTACCTAAAAATCAAAGTT
194 GATAATGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCTTATTTACCTTAAAATCAAAGTT
* ** *
276710 TATCCCTTAAATAAGGCAAGCATCGATTCTCGTAACAGTCTCCATTCTTTTCAAGATTCAGAACC
259 TATCCCTTAAATAAGGCAAGCATCGATTCTCGTAATAGTCTCCATTCTTTTCAAGATTGGGAAAC
* * * * * * *
276775 AAAAGCACATTCCCTTT-ATTAG-GATACATGGCATTGATACTTTGGTGATGCAAACAGAGCCTT
324 AAAAACACATT-CCTTTCATTAGCG-TACATGACATTGATGCTTTGGTGACGCAAA-ATAACTTT
* * * * *
276838 TCTTACCACCGTTTTTCATTGAATCAAAGTTTGTCTCTTAAATAAGAAAAATTAGAATAATCAAA
386 TCCTACCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGAAAAACTAGAATAGTCAAA
276903 CTAATCCCTGTTCTTTTCAGGATT
451 CTAATCCCTGTTCTTTTCAGGATT
* *
276927 AGGCACCATGAACGTAGTCTTCTCATAAGGAAACACGATATTGATGCTTT-GTTTTGAAAGAAAG
1 AGGCACCATAAACGTAGTCTTCTCATAAGGATACACGATATTGATGCTTTGGTTTTGAAAGAAAG
* * * *
276991 GCTTTCTTCCTGCC-AATTTTTATAAAGTCTAACACCGTGCCTCAAATGAGACAAACATTGATTC
66 GCTTTCTTCC--CCTAATTTTTGTAAAGTCTGACATCGTGCCTCAAACGAGACAAACATTGATTC
* * * *
277055 TGGAAATGGCCTTCATTCAATTTGTAATTAGGCACTATAAACACATTCTTCACATTCGGATAAAG
129 TAGTAATGGCCTTCATTCATTTTGTAATTAGGCACTATAAACACATTCTTCACATTAGGATAAAG
* * * *
277120 GATAATGATGATTTTCTTTTACATGGAAATCTTTTCTATGCCTTATTTACTTTAAAATCAAAGCT
194 GATAATGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCTTATTTACCTTAAAATCAAAGTT
* *
277185 TATCCCTTAAATAAGACAAGCATCGATTCTCATAATAGTCTCCATTCTTTTCAAGATTGGGAAAC
259 TATCCCTTAAATAAGGCAAGCATCGATTCTCGTAATAGTCTCCATTCTTTTCAAGATTGGGAAAC
* * * * ** *
277250 AAAAACACATTCCTTTCATTAGTGTCCCTAACAGCGATGCTTTGGTGACGCAAAATACATTTTTC
324 AAAAACACATTCCTTTCATTAGCGTACATGACATTGATGCTTTGGTGACGCAAAATA-ACTTTTC
*** * * *
277315 CTACCATTATTTTTGATAGAATCAAAGTTTATCTCTTAAATAAGAGAAACTAAAATAGTCAAACT
388 CTACCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGAAAAACTAGAATAGTCAAACT
277380 AATCCCTGTTCTTTTCAGGATT
453 AATCCCTGTTCTTTTCAGGATT
* * *
277402 AGGCACCATAAATGTAGGCTTCTCATAAGGATACACGATATTGATGCTTTGGTTTTTGAAAAAAA
1 AGGCACCATAAACGTAGTCTTCTCATAAGGATACACGATATTGATGCTTTGG-TTTTGAAAGAAA
* * *
277467 GGCTTTCTTCCCGCCAATTTTTATGAAGTCTGACATC-TGCCTCAAACGAGACAAACATTGATTC
65 GGCTTTCTTCCC-CTAATTTTTGTAAAGTCTGACATCGTGCCTCAAACGAGACAAACATTGATTC
* * * *
277531 TAGTAATTGCCTTCATTCATTTTTTAATTAGGCACTACAAACACATTCCTCACATTAGGATAAAG
129 TAGTAATGGCCTTCATTCATTTTGTAATTAGGCACTATAAACACATTCTTCACATTAGGATAAAG
* *
277596 GATAATGATGATTTTCTTTTCCATGAAAATCTTTTCTTTGCCTTATTTACCTTAAAATCAAAGTT
194 GATAATGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCTTATTTACCTTAAAATCAAAGTT
* * * * * *
277661 TATCCCTTAATTAAGGCAAGAATCGATTCTCATAATAGTCTCCACTCTTTTCAAGATTAGAAAAC
259 TATCCCTTAAATAAGGCAAGCATCGATTCTCGTAATAGTCTCCATTCTTTTCAAGATTGGGAAAC
* * * * * *
277726 AAAAACACATTCCTTTTACTAGCGTACATGACATTGGTGCTTTGGTGATGCTAAAAGAGCTTTTC
324 AAAAACACATTCCTTTCATTAGCGTACATGACATTGATGCTTTGGTGACGC-AAAATAACTTTTC
* * * * * * *
277791 TTGCCACTGTTCTTGATAGAGTCAAAGTTTGTCTCTTAAATTAGAGAAACTAGAATAGTCAAACT
388 CTACCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGAAAAACTAGAATAGTCAAACT
*
277856 AATCACTGTTCTTTTCAGGATT
453 AATCCCTGTTCTTTTCAGGATT
* * * *
277878 AGGCACCATAAATGCAGTCTTCTCATAAGGATATACGATATTGACGCTTTGGTTTTGAAAGAAAG
1 AGGCACCATAAACGTAGTCTTCTCATAAGGATACACGATATTGATGCTTTGGTTTTGAAAGAAAG
* * * * *
277943 GCTTTTTTCCACCTAAATTTTGTAAAGTTTGACATTGTGCCTCAAACGAGACAAACATTGATTCC
66 GCTTTCTTCC-CCTAATTTTTGTAAAGTCTGACATCGTGCCTCAAACGAGACAAACATTGATTCT
* * *
278008 AATAATGGCCTTCATTCATTTTGTAATTAGGCACCATAAACACATTCTTCACATTAGAATAAAGG
130 AGTAATGGCCTTCATTCATTTTGTAATTAGGCACTATAAACACATTCTTCACATTAGGATAAAGG
*
278073 ATAATGATGATTTTCTTTTGCATGAAAATCTTTTCTTTGCCTTATTTACCTTAAAATCAAAGTTT
195 ATAATGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCTTATTTACCTTAAAATCAAAGTTT
* * * *
278138 ATCCCTTAATTAAGGTAAGAATCGATTCTCGTAATAGTCTCCATTCTTTTCAAGATTGGGAAATA
260 ATCCCTTAAATAAGGCAAGCATCGATTCTCGTAATAGTCTCCATTCTTTTCAAGATTGGGAAACA
* * * * * * *
278203 AAAGCACAGTCCTTTTATTAGCGTACATGATATTGATGCTTTGGTGACACAAAATACACATTTCT
325 AAAACACATTCCTTTCATTAGCGTACATGACATTGATGCTTTGGTGACGCAAAATA-ACTTTTCC
* * * *
278268 TACCCCCGTTTTTGATAGAATTAAAGTTTGTCTCTTAAATAAGATAAATTAGAATAGTCAAACTA
389 TACCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGAAAAACTAGAATAGTCAAACTA
*
278333 ATCCCTGTTCTTTTCAAGATT
454 ATCCCTGTTCTTTTCAGGATT
* *
278354 AGGCACCATGAACGTAGTCTTCTCATAAGGATACACGATATTCATGCTTTGGTTTTGAAAGAAAG
1 AGGCACCATAAACGTAGTCTTCTCATAAGGATACACGATATTGATGCTTTGGTTTTGAAAGAAAG
* *
278419 GCTTTCTTCCCCCTAATATTTGTAAAGTCTGACATCGTGCCTCAATCGAGACAAACATTGATTCT
66 GCTTTCTT-CCCCTAATTTTTGTAAAGTCTGACATCGTGCCTCAAACGAGACAAACATTGATTCT
* *
278484 AGAAATGGCCTTCATTCATTTTGTAATTAGGCACTATAAACACATTCTTTACATTAGGATAAAGG
130 AGTAATGGCCTTCATTCATTTTGTAATTAGGCACTATAAACACATTCTTCACATTAGGATAAAGG
* * * * *
278549 ATAATGATAATTTTCTTTTGCATAGAAATCTTTTCTTTGCCTTCTTTACCATAAAATCAATGTTT
195 ATAATGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCTTATTTACCTTAAAATCAAAGTTT
* ** *
278614 ATCCCTTAAGTAAGGCAAGTGTCGATTCTCATAATAGTCTCCATTCTTTTCAAGATTGGGAAACA
260 ATCCCTTAAATAAGGCAAGCATCGATTCTCGTAATAGTCTCCATTCTTTTCAAGATTGGGAAACA
* *
278679 AAAACACATTTCTTTCATTAGCGTACA-CAGCATTGATGCTTTGGTGACGCAAAATACACTTTTC
325 AAAACACATTCCTTTCATTAGCGTACATGA-CATTGATGCTTTGGTGACGCAAAATA-ACTTTTC
* * *
278743 CTACCACCATATTTGATAGAATCAAAGTTTGTCTCTTAAATAAGATAAACTAGAATAGTCAAACT
388 CTACCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGAAAAACTAGAATAGTCAAACT
* *
278808 AATCCCTATTCTTTTTAGGATT
453 AATCCCTGTTCTTTTCAGGATT
* * *
278830 AGGGACCATAAATGTAGTCTTCTCATAAGGATACACGATATTCATGCTTTGGTTTTGAAAGAAAG
1 AGGCACCATAAACGTAGTCTTCTCATAAGGATACACGATATTGATGCTTTGGTTTTGAAAGAAAG
* * * *
278895 GCTTTTTTTCCCCTAATTGTTGTAAAGTCTGACATCGTGCCTCAAATGAGACAAACATTGATTCC
66 GC-TTTCTTCCCCTAATTTTTGTAAAGTCTGACATCGTGCCTCAAACGAGACAAACATTGATTCT
* *
278960 CGTAATGGCCTTCATTCATTTTGTAATTAGGCACTATAAACACATTCTTCACATTAGGATAAAGA
130 AGTAATGGCCTTCATTCATTTTGTAATTAGGCACTATAAACACATTCTTCACATTAGGATAAAGG
* * * * *
279025 ATAGTGATGATTTTCTTTTGCATGGAAATCTTTCCTGTGCCTTATTTACCTTGAAATCAAAATTT
195 ATAATGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCTTATTTACCTTAAAATCAAAGTTT
* *
279090 AT-CCTTAAGATAAGGTAAGCATCGATTCTCGTAATAGTCTCCATTCTTTTCAAGATTGGGAACC
260 ATCCCTTAA-ATAAGGCAAGCATCGATTCTCGTAATAGTCTCCATTCTTTTCAAGATTGGGAAAC
* * * * * *
279154 AAAAGCATATTCCCTTCATTAG-GATACATGACGTGGACGCTTTGGTGACGCAAAA-AGAGCTTT
324 AAAAACACATTCCTTTCATTAGCG-TACATGACATTGATGCTTTGGTGACGCAAAATA-A-CTTT
* * * * * **
279217 TCTTACCAACATTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAG-AGAACTAGAATAGCCGTA
386 TCCTACCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGAAAAACTAGAATAGTCAAA
* * * * *
279281 CTTATCCTTATTCTGTTCTGGATT
451 CTAATCCCTGTTCTTTTCAGGATT
* * * * * * *
279305 AGGCATCATAAGCGTATTCTTCTCAGAAAGATACATGATATTCATGCTTTGGTTTTGAAAGAAAG
1 AGGCACCATAAACGTAGTCTTCTCATAAGGATACACGATATTGATGCTTTGGTTTTGAAAGAAAG
* * * * *
279370 GCTTTCTTCCCGCCAATTTTTGTACAGTCTGACTTTGTGCCTCAAATGAGACAAACATTGATTCT
66 GCTTTCTTCCC-CTAATTTTTGTAAAGTCTGACATCGTGCCTCAAACGAGACAAACATTGATTCT
* * **
279435 AGAAATGCCCTTCATTCATTTTGTAATTAGGCACTATAAACACATTCTAGACATTAGGATAAAGG
130 AGTAATGGCCTTCATTCATTTTGTAATTAGGCACTATAAACACATTCTTCACATTAGGATAAAGG
* *
279500 ATAATGATAATTTTCTTTTGCATAGAAATCTTTTCTTTGCCTTATTTACCTTAAAATCAATA-TT
195 ATAATGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCTTATTTACCTTAAAATCAA-AGTT
* *
279564 TATCCCTTAAATAAGGCAAGCATCGATTCTCGTAATAGTCTCCTTTATTTTCAAGATTGGGAAAC
259 TATCCCTTAAATAAGGCAAGCATCGATTCTCGTAATAGTCTCCATTCTTTTCAAGATTGGGAAAC
* * * * *
279629 AAAAACACATTTCTTCCATTAGCGTACATGGCTTTGATGCTTTGGTGATGCAAAATACACTTTTC
324 AAAAACACATTCCTTTCATTAGCGTACATGACATTGATGCTTTGGTGACGCAAAATA-ACTTTTC
* * * * * *
279694 CTACCATCGTTTTTGATAGAATCTAAG-TT-TATCTTAAATAAGATAAACTAGAGTCA-TCAAGC
388 CTACCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGAAAAACTAGAAT-AGTCAAAC
*
279756 TAATCCCTGTTCTTTTTAGGATT
452 TAATCCCTGTTCTTTTCAGGATT
* * * * *
279779 AGGCACCATAAACATAGTCTTCTCATAAGGATACACGATTTTCATGCTTTGGTTTCGAAAGAAAA
1 AGGCACCATAAACGTAGTCTTCTCATAAGGATACACGATATTGATGCTTTGGTTTTGAAAGAAAG
* * * * * * * *
279844 GCTTTCTTCCCCCTAATTTTTGTAATGTCTGGCATCATGCCTCGAATGAGACAAATAATGATTCC
66 GCTTTCTT-CCCCTAATTTTTGTAAAGTCTGACATCGTGCCTCAAACGAGACAAACATTGATTCT
* *
279909 GGTAATGGCCTTCATTCATTTTGTAATTAGGCACTATAAACACATTCTTTACATTAGGATAAAGG
130 AGTAATGGCCTTCATTCATTTTGTAATTAGGCACTATAAACACATTCTTCACATTAGGATAAAGG
* * * * *
279974 ATAATGCTGATTTTCTTTTGCATGGAAATATTTTCTGTGCCTTATTTGCCTTAAAATCAAAATTT
195 ATAATGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCTTATTTACCTTAAAATCAAAGTTT
* *
280039 AT-CCTTAAAATAAGGCAAGCATTGATTCTCGTAATAGTCTCCATTCATTTCAAGATTGG
260 ATCCCTT-AAATAAGGCAAGCATCGATTCTCGTAATAGTCTCCATTCTTTTCAAGATTGG
280098 TGTCGCAACG
Statistics
Matches: 4048, Mismatches: 502, Indels: 93
0.87 0.11 0.02
Matches are distributed among these distances:
472 2 0.00
473 17 0.00
474 658 0.16
475 1761 0.44
476 1554 0.38
477 56 0.01
ACGTcount: A:0.32, C:0.18, G:0.15, T:0.35
Consensus pattern (474 bp):
AGGCACCATAAACGTAGTCTTCTCATAAGGATACACGATATTGATGCTTTGGTTTTGAAAGAAAG
GCTTTCTTCCCCTAATTTTTGTAAAGTCTGACATCGTGCCTCAAACGAGACAAACATTGATTCTA
GTAATGGCCTTCATTCATTTTGTAATTAGGCACTATAAACACATTCTTCACATTAGGATAAAGGA
TAATGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCTTATTTACCTTAAAATCAAAGTTTA
TCCCTTAAATAAGGCAAGCATCGATTCTCGTAATAGTCTCCATTCTTTTCAAGATTGGGAAACAA
AAACACATTCCTTTCATTAGCGTACATGACATTGATGCTTTGGTGACGCAAAATAACTTTTCCTA
CCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGAAAAACTAGAATAGTCAAACTAAT
CCCTGTTCTTTTCAGGATT
Found at i:278403 original size:952 final size:949
Alignment explanation
Indices: 275027--280097 Score: 7022
Period size: 952 Copynumber: 5.3 Consensus size: 949
275017 TTGAGCTTTC
*
275027 AGGCACCATAAACGCAGTCTTCT-ATTAAGGATATACGATATTGATGCTTTGGTTTTGAAAGAAA
1 AGGCACCATAAACGCAGTCTTCTCA-TAAGGATACACGATATTGATGCTTTGGTTTTGAAAGAAA
* * * * *
275091 GTCTTTCTTCCACCTAATTTTTGTAAAGTCTGACATTGCGCCTCAAACGAGGCAAACATTGATTC
65 GGCTTTCTTCCACCTAAATTTTGTAAAGTCTGACATCGTGCCTCAAACGAGACAAACATTGATTC
* **
275156 CAGTAATGGCCTTCATTCATTTTGTAATTGGGCACTACGAACACATTCTTCACATTAGGATAAAG
130 CAGTAATGGCCTTCATTCATTTTGTAATTAGGCACTATAAACACATTCTTCACATTAGGATAAAG
275221 GATAATGATGATTTTCTTTTGCATGAAAATCTTTTCTTTGCCTTATTTACCTTAAAATCAAAGTT
195 GATAATGATGATTTTCTTTTGCATGAAAATCTTTTCTTTGCCTTATTTACCTTAAAATCAAAGTT
* **
275286 TATCCCTTAATTAAGGCAAGAATCGATTCTCGTAACGGTCTCCATTCTTTTCAAGATTGGGAAAC
260 TATCCCTTAAATAAGGCAAGAATCGATTCTCGTAATAGTCTCCATTCTTTTCAAGATTGGGAAAC
* * *
275351 AAAAACACAGTCCTTTTATTAGCGTACATGACATTGATGCTTTGGTGACGCAAAATTCACTCTAC
325 AAAAACACAGTCCTTTTATTAGCGTACATGACATTGATGCTTTGGTGACGCAAAATACACTTTTC
* *
275416 CTACCACCGTTTTTGATAG-ATCAAAGTTGGTCTCTTAAATAAGAAAAATTGGAATAGTCAAACT
390 CTACCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGAAAAATTAGAATAGTCAAACT
* *
275480 AATCCCTATTCTTTTCAGGATTAGGCACCATGAACGTAGTCTTGTCATAAGGATACACGATATTA
455 AATCCCTGTTCTTTTCAGGATTAGGCACCATGAACGTAGTCTTCTCATAAGGATACACGATATTA
* **
275545 AAGCTTTGGTTTTGAAAGAAAGGCTTTCTTCTGGCCAATTTTTGTAATGTCTGACTTCTGCCTCA
520 ATGCTTTGGTTTTGAAAGAAAGGCTTTCTTCCCGCCAATTTTTGTAA-GTCTGACTTCTGCCTCA
275610 AACGAGACAAACATTGATTCTAGTAATGGCCTTCATTCATTTTGTAATTAGGCACTATAAACACA
584 AACGAGACAAACATTGATTCTAGTAATGGCCTTCATTCATTTTGTAATTAGGCACTATAAACACA
* * * *
275675 TTCTTCACATTAGGATAAAGGATAACGATGATTTTCTTTTGCAAGGAAATCTTTTCTTTGACTTA
649 TTCTTCACATTAGGATAAAGGATAATGATGATTTTCTTTTGCATGAAAATCTTTTCTTTGCCTTA
* * *
275740 TTTACCTTAAAATCAAAATTTATCCCTTAAATAAGGCAAGTATCGATTCTCATAACAGTCTCCAT
714 TTTACCTTAAAATCAAAGTTTATCCCTTAAATAAGGCAAGCATCGATTCTCATAATAGTCTCCAT
* * * **
275805 TCTTTTCAAGATTCGGAACCAAAAGCACATTCCTTTCATTAGTATACATGACATTGATGCTTTGG
779 TCTTTTCAAGATTAGGAAACAAAAACACATTCCTTTCATTAGCGTACATGACATTGATGCTTTGG
* * * * *
275870 TGACGCAAACAGAGCTGTTCTTACCACCGTTTTTCATTGAATCAAAGTTTGTCTCTTAAATTAGA
844 TGATGCAAA-AGAGCTTTTCTTACCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGA
*
275935 AAAACTAGAATAGTCAAACTAATCACTGTTCTTTTCAGGATT
908 AAAACTAGAATAGTCAAACTAATCCCTGTTCTTTTCAGGATT
* * * *
275977 AGGCACCGTAAATGCAGTCTTCTCATAAGGATATACGATATTGACGCTTTGGTTTTGAAAGAAAG
1 AGGCACCATAAACGCAGTCTTCTCATAAGGATACACGATATTGATGCTTTGGTTTTGAAAGAAAG
* *
276042 GCTTTTTTCCACCTAAATTTTGTAAAGTTTGACATCGTGCCTCAAACGAGACAAACATTGATT-C
66 GCTTTCTTCCACCTAAATTTTGTAAAGTCTGACATCGTGCCTCAAACGAGACAAACATTGATTCC
* * **
276106 AGTAATGGCCTTCATTTATTTTGTAATTAGGCACCATAAACACATTCTTTTCATTAGGATAAAGG
131 AGTAATGGCCTTCATTCATTTTGTAATTAGGCACTATAAACACATTCTTCACATTAGGATAAAGG
* * *
276171 ATAATGATGATTTTCTTTTGCAAGAAAATCTTTTATTTACCTTATTTACCTTAAAATCAAAGTTT
196 ATAATGATGATTTTCTTTTGCATGAAAATCTTTTCTTTGCCTTATTTACCTTAAAATCAAAGTTT
* * * *
276236 ATCCCTTAATTAAGGAAAGAATCGATTCTTGTAACAGTCTCCATTCTTTTCAAGATTGGGAAACA
261 ATCCCTTAAATAAGGCAAGAATCGATTCTCGTAATAGTCTCCATTCTTTTCAAGATTGGGAAACA
** * * *
276301 AAAACGTAGTCCTTTTATTAGCCTGCATGACATTGATGCTTTGGTGATGCAAAATACACTTTTCC
326 AAAACACAGTCCTTTTATTAGCGTACATGACATTGATGCTTTGGTGACGCAAAATACACTTTTCC
* * *
276366 TACCACCGTTTTAGATAGAATCAAAGTTTGTCTCTTAAACAAGAAAAATTAGAATAATCAAACTA
391 TACCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGAAAAATTAGAATAGTCAAACTA
* * * *
276431 ATCCCTGTTCTTTTCAGGATTTGGCACTATGAACATAGTCTTTTCATAAGGATACACGATATTAA
456 ATCCCTGTTCTTTTCAGGATTAGGCACCATGAACGTAGTCTTCTCATAAGGATACACGATATTAA
*** *
276496 TGCTTTGGTTTTGAAAGAAAGGCTTTCTTTTGGCCAATTTTTGTAATGTCTGACTTCTACCTCAA
521 TGCTTTGGTTTTGAAAGAAAGGCTTTCTTCCCGCCAATTTTTGTAA-GTCTGACTTCTGCCTCAA
* *
276561 ACAAGACAAACATTGATTCTAGTAATGGCCTTCATTCATTTTGTAATTAGGCATTATAAACACAT
585 ACGAGACAAACATTGATTCTAGTAATGGCCTTCATTCATTTTGTAATTAGGCACTATAAACACAT
* * * *
276626 TCTTCACATTAGGATAAAGGATAATGATGATTTTCTTTTACAAGGAAATCTTTTTTTTGCCTTAT
650 TCTTCACATTAGGATAAAGGATAATGATGATTTTCTTTTGCATGAAAATCTTTTCTTTGCCTTAT
* * *
276691 TTACCTAAAAATCAAAGTTTATCCCTTAAATAAGGCAAGCATCGATTCTCGTAACAGTCTCCATT
715 TTACCTTAAAATCAAAGTTTATCCCTTAAATAAGGCAAGCATCGATTCTCATAATAGTCTCCATT
* * * *
276756 CTTTTCAAGATTCA-GAACCAAAAGCACATTCCCTTT-ATTAG-GATACATGGCATTGATACTTT
780 CTTTTCAAGATT-AGGAAACAAAAACACATT-CCTTTCATTAGCG-TACATGACATTGATGCTTT
* * *
276818 GGTGATGCAAACAGAGCCTTTCTTACCACCGTTTTTCATTGAATCAAAGTTTGTCTCTTAAATAA
842 GGTGATGCAAA-AGAGCTTTTCTTACCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAA
* *
276883 GAAAAATTAGAATAATCAAACTAATCCCTGTTCTTTTCAGGATT
906 GAAAAACTAGAATAGTCAAACTAATCCCTGTTCTTTTCAGGATT
* * *
276927 AGGCACCATGAACGTAGTCTTCTCATAAGGAAACACGATATTGATGCTTT-GTTTTGAAAGAAAG
1 AGGCACCATAAACGCAGTCTTCTCATAAGGATACACGATATTGATGCTTTGGTTTTGAAAGAAAG
* * * * * *
276991 GCTTTCTTCCTGCC-AATTTTTATAAAGTCTAACACCGTGCCTCAAATGAGACAAACATTGATTC
66 GCTTTCTTCC-ACCTAAATTTTGTAAAGTCTGACATCGTGCCTCAAACGAGACAAACATTGATTC
** * * *
277055 TGGAAATGGCCTTCATTCAATTTGTAATTAGGCACTATAAACACATTCTTCACATTCGGATAAAG
130 CAGTAATGGCCTTCATTCATTTTGTAATTAGGCACTATAAACACATTCTTCACATTAGGATAAAG
* * * * *
277120 GATAATGATGATTTTCTTTTACATGGAAATCTTTTCTATGCCTTATTTACTTTAAAATCAAAGCT
195 GATAATGATGATTTTCTTTTGCATGAAAATCTTTTCTTTGCCTTATTTACCTTAAAATCAAAGTT
* * *
277185 TATCCCTTAAATAAGACAAGCATCGATTCTCATAATAGTCTCCATTCTTTTCAAGATTGGGAAAC
260 TATCCCTTAAATAAGGCAAGAATCGATTCTCGTAATAGTCTCCATTCTTTTCAAGATTGGGAAAC
* * * * * * ** *
277250 AAAAACACATTCCTTTCATTAGTGTCCCTAACAGCGATGCTTTGGTGACGCAAAATACATTTTTC
325 AAAAACACAGTCCTTTTATTAGCGTACATGACATTGATGCTTTGGTGACGCAAAATACACTTTTC
*** * * * *
277315 CTACCATTATTTTTGATAGAATCAAAGTTTATCTCTTAAATAAGAGAAACTAAAATAGTCAAACT
390 CTACCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGAAAAATTAGAATAGTCAAACT
* * * *
277380 AATCCCTGTTCTTTTCAGGATTAGGCACCATAAATGTAGGCTTCTCATAAGGATACACGATATTG
455 AATCCCTGTTCTTTTCAGGATTAGGCACCATGAACGTAGTCTTCTCATAAGGATACACGATATTA
* * *
277445 ATGCTTTGGTTTTTGAAAAAAAGGCTTTCTTCCCGCCAATTTTTATGAAGTCTGACATCTGCCTC
520 ATGCTTTGG-TTTTGAAAGAAAGGCTTTCTTCCCGCCAATTTTTGT-AAGTCTGACTTCTGCCTC
* * *
277510 AAACGAGACAAACATTGATTCTAGTAATTGCCTTCATTCATTTTTTAATTAGGCACTACAAACAC
583 AAACGAGACAAACATTGATTCTAGTAATGGCCTTCATTCATTTTGTAATTAGGCACTATAAACAC
* *
277575 ATTCCTCACATTAGGATAAAGGATAATGATGATTTTCTTTTCCATGAAAATCTTTTCTTTGCCTT
648 ATTCTTCACATTAGGATAAAGGATAATGATGATTTTCTTTTGCATGAAAATCTTTTCTTTGCCTT
* *
277640 ATTTACCTTAAAATCAAAGTTTATCCCTTAATTAAGGCAAGAATCGATTCTCATAATAGTCTCCA
713 ATTTACCTTAAAATCAAAGTTTATCCCTTAAATAAGGCAAGCATCGATTCTCATAATAGTCTCCA
* * * * *
277705 CTCTTTTCAAGATTAGAAAACAAAAACACATTCCTTTTACTAGCGTACATGACATTGGTGCTTTG
778 TTCTTTTCAAGATTAGGAAACAAAAACACATTCCTTTCATTAGCGTACATGACATTGATGCTTTG
* * * * *
277770 GTGATGCTAAAAGAGCTTTTCTTGCCACTGTTCTTGATAGAGTCAAAGTTTGTCTCTTAAATTAG
843 GTGATGC-AAAAGAGCTTTTCTTACCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAG
* *
277835 AGAAACTAGAATAGTCAAACTAATCACTGTTCTTTTCAGGATT
907 AAAAACTAGAATAGTCAAACTAATCCCTGTTCTTTTCAGGATT
* * *
277878 AGGCACCATAAATGCAGTCTTCTCATAAGGATATACGATATTGACGCTTTGGTTTTGAAAGAAAG
1 AGGCACCATAAACGCAGTCTTCTCATAAGGATACACGATATTGATGCTTTGGTTTTGAAAGAAAG
* * *
277943 GCTTTTTTCCACCTAAATTTTGTAAAGTTTGACATTGTGCCTCAAACGAGACAAACATTGATTCC
66 GCTTTCTTCCACCTAAATTTTGTAAAGTCTGACATCGTGCCTCAAACGAGACAAACATTGATTCC
* * *
278008 AATAATGGCCTTCATTCATTTTGTAATTAGGCACCATAAACACATTCTTCACATTAGAATAAAGG
131 AGTAATGGCCTTCATTCATTTTGTAATTAGGCACTATAAACACATTCTTCACATTAGGATAAAGG
278073 ATAATGATGATTTTCTTTTGCATGAAAATCTTTTCTTTGCCTTATTTACCTTAAAATCAAAGTTT
196 ATAATGATGATTTTCTTTTGCATGAAAATCTTTTCTTTGCCTTATTTACCTTAAAATCAAAGTTT
* * *
278138 ATCCCTTAATTAAGGTAAGAATCGATTCTCGTAATAGTCTCCATTCTTTTCAAGATTGGGAAATA
261 ATCCCTTAAATAAGGCAAGAATCGATTCTCGTAATAGTCTCCATTCTTTTCAAGATTGGGAAACA
* * * * *
278203 AAAGCACAGTCCTTTTATTAGCGTACATGATATTGATGCTTTGGTGACACAAAATACACATTTCT
326 AAAACACAGTCCTTTTATTAGCGTACATGACATTGATGCTTTGGTGACGCAAAATACACTTTTCC
* * *
278268 TACCCCCGTTTTTGATAGAATTAAAGTTTGTCTCTTAAATAAGATAAATTAGAATAGTCAAACTA
391 TACCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGAAAAATTAGAATAGTCAAACTA
* *
278333 ATCCCTGTTCTTTTCAAGATTAGGCACCATGAACGTAGTCTTCTCATAAGGATACACGATATTCA
456 ATCCCTGTTCTTTTCAGGATTAGGCACCATGAACGTAGTCTTCTCATAAGGATACACGATATTAA
* *
278398 TGCTTTGGTTTTGAAAGAAAGGCTTTCTTCCC-CCTAATATTTGTAAAGTCTGACATCGTGCCTC
521 TGCTTTGGTTTTGAAAGAAAGGCTTTCTTCCCGCC-AATTTTTGT-AAGTCTGACTTC-TGCCTC
* *
278462 AATCGAGACAAACATTGATTCTAGAAATGGCCTTCATTCATTTTGTAATTAGGCACTATAAACAC
583 AAACGAGACAAACATTGATTCTAGTAATGGCCTTCATTCATTTTGTAATTAGGCACTATAAACAC
* *
278527 ATTCTTTACATTAGGATAAAGGATAATGATAATTTTCTTTTGCAT-AGAAATCTTTTCTTTGCCT
648 ATTCTTCACATTAGGATAAAGGATAATGATGATTTTCTTTTGCATGA-AAATCTTTTCTTTGCCT
* * * * **
278591 TCTTTACCATAAAATCAATGTTTATCCCTTAAGTAAGGCAAGTGTCGATTCTCATAATAGTCTCC
712 TATTTACCTTAAAATCAAAGTTTATCCCTTAAATAAGGCAAGCATCGATTCTCATAATAGTCTCC
* * *
278656 ATTCTTTTCAAGATTGGGAAACAAAAACACATTTCTTTCATTAGCGTACA-CAGCATTGATGCTT
777 ATTCTTTTCAAGATTAGGAAACAAAAACACATTCCTTTCATTAGCGTACATGA-CATTGATGCTT
* * * * * *
278720 TGGTGACGCAAAATACACTTTTCCTACCACCATATTTGATAGAATCAAAGTTTGTCTCTTAAATA
841 TGGTGATGCAAAAGA-GCTTTTCTTACCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATA
* * *
278785 AGATAAACTAGAATAGTCAAACTAATCCCTATTCTTTTTAGGATT
905 AGAAAAACTAGAATAGTCAAACTAATCCCTGTTCTTTTCAGGATT
* * * *
278830 AGGGACCATAAATGTAGTCTTCTCATAAGGATACACGATATTCATGCTTTGGTTTTGAAAGAAAG
1 AGGCACCATAAACGCAGTCTTCTCATAAGGATACACGATATTGATGCTTTGGTTTTGAAAGAAAG
* *
278895 GCTTTTTTTCC-CCT-AATTGTTGTAAAGTCTGACATCGTGCCTCAAATGAGACAAACATTGATT
66 GC-TTTCTTCCACCTAAATT-TTGTAAAGTCTGACATCGTGCCTCAAACGAGACAAACATTGATT
*
278958 CCCGTAATGGCCTTCATTCATTTTGTAATTAGGCACTATAAACACATTCTTCACATTAGGATAAA
129 CCAGTAATGGCCTTCATTCATTTTGTAATTAGGCACTATAAACACATTCTTCACATTAGGATAAA
* * * * * * *
279023 GAATAGTGATGATTTTCTTTTGCATGGAAATCTTTCCTGTGCCTTATTTACCTTGAAATCAAAAT
194 GGATAATGATGATTTTCTTTTGCATGAAAATCTTTTCTTTGCCTTATTTACCTTAAAATCAAAGT
* *
279088 TTAT-CCTTAAGATAAGGTAAGCATCGATTCTCGTAATAGTCTCCATTCTTTTCAAGATTGGGAA
259 TTATCCCTTAA-ATAAGGCAAGAATCGATTCTCGTAATAGTCTCCATTCTTTTCAAGATTGGGAA
* * * * * * * * * *
279152 CCAAAAGCATATTCCCTTCATTAG-GATACATGACGTGGACGCTTTGGTGACGCAAAA-AGAGCT
323 ACAAAAACACAGTCCTTTTATTAGCG-TACATGACATTGATGCTTTGGTGACGCAAAATACA-CT
* * * * * * *
279215 TTTCTTACCAACATTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAG-AGAACTAGAATAGCCG
386 TTTCCTACCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGAAAAATTAGAATAGTCA
* * * * * * * * * * *
279279 TACTTATCCTTATTCTGTTCTGGATTAGGCATCAT-AAGCGTATTCTTCTCAGAAAGATACATGA
451 AACTAATCCCTGTTCTTTTCAGGATTAGGCACCATGAA-CGTAGTCTTCTCATAAGGATACACGA
* *
279343 TATTCATGCTTTGGTTTTGAAAGAAAGGCTTTCTTCCCGCCAATTTTTGTACAGTCTGACTTTGT
515 TATTAATGCTTTGGTTTTGAAAGAAAGGCTTTCTTCCCGCCAATTTTTGTA-AGTCTGAC-TTCT
* * *
279408 GCCTCAAATGAGACAAACATTGATTCTAGAAATGCCCTTCATTCATTTTGTAATTAGGCACTATA
578 GCCTCAAACGAGACAAACATTGATTCTAGTAATGGCCTTCATTCATTTTGTAATTAGGCACTATA
** *
279473 AACACATTCTAGACATTAGGATAAAGGATAATGATAATTTTCTTTTGCAT-AGAAATCTTTTCTT
643 AACACATTCTTCACATTAGGATAAAGGATAATGATGATTTTCTTTTGCATGA-AAATCTTTTCTT
*
279537 TGCCTTATTTACCTTAAAATCAATA-TTTATCCCTTAAATAAGGCAAGCATCGATTCTCGTAATA
707 TGCCTTATTTACCTTAAAATCAA-AGTTTATCCCTTAAATAAGGCAAGCATCGATTCTCATAATA
* * * * * * *
279601 GTCTCCTTTATTTTCAAGATTGGGAAACAAAAACACATTTCTTCCATTAGCGTACATGGCTTTGA
771 GTCTCCATTCTTTTCAAGATTAGGAAACAAAAACACATTCCTTTCATTAGCGTACATGACATTGA
* * * * * *
279666 TGCTTTGGTGATGCAAAATACACTTTTCCTACCATCGTTTTTGATAGAATCTAAG-TT-TATCTT
836 TGCTTTGGTGATGCAAAAGA-GCTTTTCTTACCACCGTTTTTGATAGAATCAAAGTTTGTCTCTT
* * * *
279729 AAATAAGATAAACTAGAGTCA-TCAAGCTAATCCCTGTTCTTTTTAGGATT
900 AAATAAGAAAAACTAGAAT-AGTCAAACTAATCCCTGTTCTTTTCAGGATT
** * * * *
279779 AGGCACCATAAACATAGTCTTCTCATAAGGATACACGATTTTCATGCTTTGGTTTCGAAAGAAAA
1 AGGCACCATAAACGCAGTCTTCTCATAAGGATACACGATATTGATGCTTTGGTTTTGAAAGAAAG
* * * * * * * * *
279844 GCTTTCTTCCCCCTAATTTTTGTAATGTCTGGCATCATGCCTCGAATGAGACAAATAATGATTCC
66 GCTTTCTTCCACCTAAATTTTGTAAAGTCTGACATCGTGCCTCAAACGAGACAAACATTGATTCC
* *
279909 GGTAATGGCCTTCATTCATTTTGTAATTAGGCACTATAAACACATTCTTTACATTAGGATAAAGG
131 AGTAATGGCCTTCATTCATTTTGTAATTAGGCACTATAAACACATTCTTCACATTAGGATAAAGG
* * * * * *
279974 ATAATGCTGATTTTCTTTTGCATGGAAATATTTTCTGTGCCTTATTTGCCTTAAAATCAAAATTT
196 ATAATGATGATTTTCTTTTGCATGAAAATCTTTTCTTTGCCTTATTTACCTTAAAATCAAAGTTT
* * *
280039 AT-CCTTAAAATAAGGCAAGCATTGATTCTCGTAATAGTCTCCATTCATTTCAAGATTGG
261 ATCCCTT-AAATAAGGCAAGAATCGATTCTCGTAATAGTCTCCATTCTTTTCAAGATTGG
280098 TGTCGCAACG
Statistics
Matches: 3694, Mismatches: 392, Indels: 71
0.89 0.09 0.02
Matches are distributed among these distances:
948 7 0.00
949 651 0.18
950 1025 0.28
951 881 0.24
952 1122 0.30
953 8 0.00
ACGTcount: A:0.32, C:0.18, G:0.15, T:0.35
Consensus pattern (949 bp):
AGGCACCATAAACGCAGTCTTCTCATAAGGATACACGATATTGATGCTTTGGTTTTGAAAGAAAG
GCTTTCTTCCACCTAAATTTTGTAAAGTCTGACATCGTGCCTCAAACGAGACAAACATTGATTCC
AGTAATGGCCTTCATTCATTTTGTAATTAGGCACTATAAACACATTCTTCACATTAGGATAAAGG
ATAATGATGATTTTCTTTTGCATGAAAATCTTTTCTTTGCCTTATTTACCTTAAAATCAAAGTTT
ATCCCTTAAATAAGGCAAGAATCGATTCTCGTAATAGTCTCCATTCTTTTCAAGATTGGGAAACA
AAAACACAGTCCTTTTATTAGCGTACATGACATTGATGCTTTGGTGACGCAAAATACACTTTTCC
TACCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGAAAAATTAGAATAGTCAAACTA
ATCCCTGTTCTTTTCAGGATTAGGCACCATGAACGTAGTCTTCTCATAAGGATACACGATATTAA
TGCTTTGGTTTTGAAAGAAAGGCTTTCTTCCCGCCAATTTTTGTAAGTCTGACTTCTGCCTCAAA
CGAGACAAACATTGATTCTAGTAATGGCCTTCATTCATTTTGTAATTAGGCACTATAAACACATT
CTTCACATTAGGATAAAGGATAATGATGATTTTCTTTTGCATGAAAATCTTTTCTTTGCCTTATT
TACCTTAAAATCAAAGTTTATCCCTTAAATAAGGCAAGCATCGATTCTCATAATAGTCTCCATTC
TTTTCAAGATTAGGAAACAAAAACACATTCCTTTCATTAGCGTACATGACATTGATGCTTTGGTG
ATGCAAAAGAGCTTTTCTTACCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGAAAA
ACTAGAATAGTCAAACTAATCCCTGTTCTTTTCAGGATT
Found at i:281595 original size:13 final size:13
Alignment explanation
Indices: 281577--281602 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
281567 CATTTTGGGA
281577 TGTATCGATACAT
1 TGTATCGATACAT
281590 TGTATCGATACAT
1 TGTATCGATACAT
281603 CTTGTGTGTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:281599 original size:33 final size:32
Alignment explanation
Indices: 281557--281620 Score: 92
Period size: 33 Copynumber: 2.0 Consensus size: 32
281547 TACAAGCCAA
*
281557 TGTATCGATACATTTTGGGATGTATCGATACAT
1 TGTATCGATACATCTTGGG-TGTATCGATACAT
* *
281590 TGTATCGATACATCTTGTGTGTATTGATACA
1 TGTATCGATACATCTTGGGTGTATCGATACA
281621 AACAGTTAAG
Statistics
Matches: 28, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
32 11 0.39
33 17 0.61
ACGTcount: A:0.27, C:0.12, G:0.20, T:0.41
Consensus pattern (32 bp):
TGTATCGATACATCTTGGGTGTATCGATACAT
Found at i:284234 original size:47 final size:50
Alignment explanation
Indices: 284179--284274 Score: 128
Period size: 47 Copynumber: 2.0 Consensus size: 50
284169 AAACCCTTTG
*
284179 TATCGATACA-GAGAATACTGTATCGATACA-TCT-GAA-TTTTCCAGATA
1 TATCGATACATGAGAACA-TGTATCGATACATTCTGGAATTTTTCCAGATA
**
284226 TATCGATACATTTGAACATGTATCGATACATTCTGGAATTTTTCCAGAT
1 TATCGATACATGAGAACATGTATCGATACATTCTGGAATTTTTCCAGAT
284275 TTGGACCCTA
Statistics
Matches: 42, Mismatches: 3, Indels: 5
0.84 0.06 0.10
Matches are distributed among these distances:
47 22 0.52
48 7 0.17
49 3 0.07
50 10 0.24
ACGTcount: A:0.33, C:0.17, G:0.15, T:0.35
Consensus pattern (50 bp):
TATCGATACATGAGAACATGTATCGATACATTCTGGAATTTTTCCAGATA
Found at i:284441 original size:25 final size:23
Alignment explanation
Indices: 284390--284441 Score: 63
Period size: 25 Copynumber: 2.2 Consensus size: 23
284380 CAACATCATT
284390 CATCACAAAATAACAAATAACAA
1 CATCACAAAATAACAAATAACAA
284413 -ATCACAAAATTTAATCAAATAA-AA
1 CATCACAAAA--TAA-CAAATAACAA
284437 CATCA
1 CATCA
284442 AAAGTGCACT
Statistics
Matches: 25, Mismatches: 0, Indels: 6
0.81 0.00 0.19
Matches are distributed among these distances:
22 9 0.36
24 5 0.20
25 11 0.44
ACGTcount: A:0.62, C:0.19, G:0.00, T:0.19
Consensus pattern (23 bp):
CATCACAAAATAACAAATAACAA
Found at i:289576 original size:20 final size:21
Alignment explanation
Indices: 289551--289603 Score: 69
Period size: 20 Copynumber: 2.7 Consensus size: 21
289541 TTACAAGCCA
289551 ATGTATCGATACAAT-TTCG-G
1 ATGTATCGATACAATCTT-GTG
289571 ATGTATCGATAC-ATCTTGTG
1 ATGTATCGATACAATCTTGTG
289591 -TGTATCGATACAA
1 ATGTATCGATACAA
289604 ACAGTTAAGG
Statistics
Matches: 30, Mismatches: 0, Indels: 6
0.83 0.00 0.17
Matches are distributed among these distances:
19 14 0.47
20 16 0.53
ACGTcount: A:0.30, C:0.15, G:0.19, T:0.36
Consensus pattern (21 bp):
ATGTATCGATACAATCTTGTG
Found at i:289741 original size:20 final size:19
Alignment explanation
Indices: 289718--289756 Score: 60
Period size: 20 Copynumber: 2.0 Consensus size: 19
289708 CTATGCATTA
289718 TGTATCGATACATTTGAAGG
1 TGTATCGATACATTT-AAGG
*
289738 TGTATTGATACATTTAAGG
1 TGTATCGATACATTTAAGG
289757 GTTTTGACCT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
19 4 0.22
20 14 0.78
ACGTcount: A:0.31, C:0.08, G:0.23, T:0.38
Consensus pattern (19 bp):
TGTATCGATACATTTAAGG
Found at i:296655 original size:3 final size:3
Alignment explanation
Indices: 296647--296677 Score: 53
Period size: 3 Copynumber: 10.3 Consensus size: 3
296637 TTTGAGTCAC
*
296647 CAT CAT CAT CAT CAT CAT CAT CTT CAT CAT C
1 CAT CAT CAT CAT CAT CAT CAT CAT CAT CAT C
296678 CTTGATGGTT
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
3 26 1.00
ACGTcount: A:0.29, C:0.35, G:0.00, T:0.35
Consensus pattern (3 bp):
CAT
Found at i:298297 original size:73 final size:73
Alignment explanation
Indices: 298178--298358 Score: 344
Period size: 73 Copynumber: 2.5 Consensus size: 73
298168 ATCCCGTGTT
* *
298178 AATGTATCGATACAATTTGGGATGTATCGATACATGCATTTGAAAATATAGCCGTTGCTAGCCGT
1 AATGTATCGATACAATTTCGGATGTATCGATACATGCATTTGAAAATATAGCCGTTACTAGCCGT
298243 TACAAGCC
66 TACAAGCC
298251 AATGTATCGATACAATTTCGGATGTATCGATACATGCATTTGAAAATATAGCCGTTACTAGCCGT
1 AATGTATCGATACAATTTCGGATGTATCGATACATGCATTTGAAAATATAGCCGTTACTAGCCGT
298316 TACAAGCC
66 TACAAGCC
298324 AATGTATCGATACAATTTCGGATGTATCGATACAT
1 AATGTATCGATACAATTTCGGATGTATCGATACAT
298359 CTTGTGTGTA
Statistics
Matches: 106, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
73 106 1.00
ACGTcount: A:0.33, C:0.18, G:0.19, T:0.31
Consensus pattern (73 bp):
AATGTATCGATACAATTTCGGATGTATCGATACATGCATTTGAAAATATAGCCGTTACTAGCCGT
TACAAGCC
Found at i:298350 original size:20 final size:21
Alignment explanation
Indices: 298325--298377 Score: 69
Period size: 20 Copynumber: 2.7 Consensus size: 21
298315 TTACAAGCCA
298325 ATGTATCGATACAAT-TTCG-G
1 ATGTATCGATACAATCTT-GTG
298345 ATGTATCGATAC-ATCTTGTG
1 ATGTATCGATACAATCTTGTG
298365 -TGTATCGATACAA
1 ATGTATCGATACAA
298378 ACGGTTAAGG
Statistics
Matches: 30, Mismatches: 0, Indels: 6
0.83 0.00 0.17
Matches are distributed among these distances:
19 14 0.47
20 16 0.53
ACGTcount: A:0.30, C:0.15, G:0.19, T:0.36
Consensus pattern (21 bp):
ATGTATCGATACAATCTTGTG
Found at i:298505 original size:20 final size:19
Alignment explanation
Indices: 298480--298518 Score: 69
Period size: 20 Copynumber: 2.0 Consensus size: 19
298470 ATTCTGCATA
298480 TGTATCGATACATTTGAAGG
1 TGTATCGATACATTT-AAGG
298500 TGTATCGATACATTTAAGG
1 TGTATCGATACATTTAAGG
298519 GTTTTGACCT
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
19 4 0.21
20 15 0.79
ACGTcount: A:0.31, C:0.10, G:0.23, T:0.36
Consensus pattern (19 bp):
TGTATCGATACATTTAAGG
Found at i:302492 original size:33 final size:33
Alignment explanation
Indices: 302448--302510 Score: 92
Period size: 33 Copynumber: 1.9 Consensus size: 33
302438 GTTACAAGCC
*
302448 ATGTATCGATACATT-TCATCATGTATCGATTCA
1 ATGTATCGATACATTGT-ACCATGTATCGATTCA
*
302481 ATGTATTGATACATTGTACCATGTATCGAT
1 ATGTATCGATACATTGTACCATGTATCGAT
302511 ACAAATAGTG
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
33 26 0.96
34 1 0.04
ACGTcount: A:0.30, C:0.16, G:0.14, T:0.40
Consensus pattern (33 bp):
ATGTATCGATACATTGTACCATGTATCGATTCA
Found at i:302568 original size:20 final size:20
Alignment explanation
Indices: 302543--302602 Score: 86
Period size: 20 Copynumber: 3.0 Consensus size: 20
302533 CTGTCAGTTT
302543 CATGTATCGATACAATTATC
1 CATGTATCGATACAATTATC
* *
302563 CATGTATCGATACAATGA-G
1 CATGTATCGATACAATTATC
302582 CATGTATCGATACAATATATC
1 CATGTATCGATACAAT-TATC
302603 GATACAAAGC
Statistics
Matches: 34, Mismatches: 4, Indels: 3
0.83 0.10 0.07
Matches are distributed among these distances:
19 16 0.47
20 18 0.53
ACGTcount: A:0.37, C:0.18, G:0.13, T:0.32
Consensus pattern (20 bp):
CATGTATCGATACAATTATC
Found at i:304085 original size:13 final size:13
Alignment explanation
Indices: 304067--304092 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
304057 CAATTTTTTG
304067 TGTATCGATACAT
1 TGTATCGATACAT
304080 TGTATCGATACAT
1 TGTATCGATACAT
304093 ACTTGCTGTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:306658 original size:13 final size:13
Alignment explanation
Indices: 306640--306665 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
306630 ATAATCACCC
306640 TGTATCGATACAA
1 TGTATCGATACAA
306653 TGTATCGATACAA
1 TGTATCGATACAA
306666 AGAAAAATGT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:308756 original size:15 final size:15
Alignment explanation
Indices: 308736--308766 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
308726 ATTTCGTTTG
*
308736 GAGCTTCTTCATTTT
1 GAGCTTCCTCATTTT
308751 GAGCTTCCTCATTTT
1 GAGCTTCCTCATTTT
308766 G
1 G
308767 GACATTTTTA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.13, C:0.23, G:0.16, T:0.48
Consensus pattern (15 bp):
GAGCTTCCTCATTTT
Found at i:310599 original size:21 final size:21
Alignment explanation
Indices: 310570--310614 Score: 56
Period size: 21 Copynumber: 2.1 Consensus size: 21
310560 AAGTTTTCAT
*
310570 TTTTCTTAGCTAAC-TCATTA
1 TTTTCTTAGCCAACTTCATTA
*
310590 TTTTCATTAGCCAACTTCTTTA
1 TTTTC-TTAGCCAACTTCATTA
310612 TTT
1 TTT
310615 CAACTTGAAA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
20 5 0.24
21 8 0.38
22 8 0.38
ACGTcount: A:0.22, C:0.20, G:0.04, T:0.53
Consensus pattern (21 bp):
TTTTCTTAGCCAACTTCATTA
Found at i:312845 original size:13 final size:13
Alignment explanation
Indices: 312827--312852 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
312817 CAATTTTTTG
312827 TGTATCGATACAT
1 TGTATCGATACAT
312840 TGTATCGATACAT
1 TGTATCGATACAT
312853 ACTTGCTGTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:318959 original size:52 final size:52
Alignment explanation
Indices: 318779--319004 Score: 194
Period size: 52 Copynumber: 4.3 Consensus size: 52
318769 GATGAAATAA
* * * * * *
318779 CGAGGTTGGAGTATCCTCGATTGTGAAAAAATTGGTGTTTTTGGAAATAAAAT
1 CGAGGTTGGAGTATCCCCGATTATGGAAAAATTAGTG-TTTTAGAAATAAAAC
* * * *
318832 C-AGAGTTAGAGCATCCCCGATTAAAGG-AAAATTGGTGTTTT-GAAAATAAAAC
1 CGAG-GTTGGAGTATCCCCGATT-ATGGAAAAATTAGTGTTTTAG-AAATAAAAC
*
318884 CG-GAGTTGGAGTATCCCCGATTATGGAAAAATTAGTGTTTTAGCAATAAAAC
1 CGAG-GTTGGAGTATCCCCGATTATGGAAAAATTAGTGTTTTAGAAATAAAAC
* * * * *
318936 CGAGGTTGGAGTATCCCCGATTAT-GAGAAATCAATATTTTA-AGAATAAAGC
1 CGAGGTTGGAGTATCCCCGATTATGGAAAAATTAGTGTTTTAGA-AATAAAAC
* *
318987 AGGGGTTGGAGTATCCCC
1 CGAGGTTGGAGTATCCCC
319005 TCGGAAATAA
Statistics
Matches: 145, Mismatches: 20, Indels: 18
0.79 0.11 0.10
Matches are distributed among these distances:
51 40 0.28
52 76 0.52
53 28 0.19
54 1 0.01
ACGTcount: A:0.35, C:0.13, G:0.24, T:0.28
Consensus pattern (52 bp):
CGAGGTTGGAGTATCCCCGATTATGGAAAAATTAGTGTTTTAGAAATAAAAC
Found at i:318997 original size:51 final size:52
Alignment explanation
Indices: 318888--319004 Score: 148
Period size: 51 Copynumber: 2.3 Consensus size: 52
318878 TAAAACCGGA
* * * *
318888 GTTGGAGTATCCCCGATTATGGAAAAATTAGTGTTTTAGCAATAAAACCGAG
1 GTTGGAGTATCCCCGATTATGGAAAAATCAATATTTTAGCAATAAAACAGAG
* * *
318940 GTTGGAGTATCCCCGATTAT-GAGAAATCAATATTTTAAG-AATAAAGCAGGG
1 GTTGGAGTATCCCCGATTATGGAAAAATCAATATTTT-AGCAATAAAACAGAG
318991 GTTGGAGTATCCCC
1 GTTGGAGTATCCCC
319005 TCGGAAATAA
Statistics
Matches: 57, Mismatches: 7, Indels: 3
0.85 0.10 0.04
Matches are distributed among these distances:
51 35 0.61
52 22 0.39
ACGTcount: A:0.33, C:0.15, G:0.24, T:0.28
Consensus pattern (52 bp):
GTTGGAGTATCCCCGATTATGGAAAAATCAATATTTTAGCAATAAAACAGAG
Found at i:319054 original size:27 final size:28
Alignment explanation
Indices: 318988--319062 Score: 98
Period size: 27 Copynumber: 2.7 Consensus size: 28
318978 GAATAAAGCA
*** *
318988 GGGGTTGGAGTATCCCCTCGGAAATAAT
1 GGGGTTGGAGTATCCCCGATGAAATAAC
*
319016 GGGGTTGGAGTATCCCCGATG-ATTAAC
1 GGGGTTGGAGTATCCCCGATGAAATAAC
319043 GGGGTTGGAGTATCCCCGAT
1 GGGGTTGGAGTATCCCCGAT
319063 TGTGAAAAAT
Statistics
Matches: 42, Mismatches: 5, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
27 24 0.57
28 18 0.43
ACGTcount: A:0.21, C:0.19, G:0.35, T:0.25
Consensus pattern (28 bp):
GGGGTTGGAGTATCCCCGATGAAATAAC
Found at i:319126 original size:53 final size:51
Alignment explanation
Indices: 319046--319167 Score: 156
Period size: 51 Copynumber: 2.4 Consensus size: 51
319036 GATTAACGGG
* * *
319046 GTTGGAGTATCCCCGATTGTGAAAAATTGGTGTTTTTTGGAAATAAAATCGAA
1 GTTGGAGTATCCCCGATTATGAAAAATTAGTG--TTTTGAAAATAAAATCGAA
*
319099 GTTGGAGTATCCCCGATTAT-AGAAAATTAGTGTTTTGAAAATAAAATCGGA
1 GTTGGAGTATCCCCGATTATGA-AAAATTAGTGTTTTGAAAATAAAATCGAA
* *
319150 GATGGAATATCCCCGATT
1 GTTGGAGTATCCCCGATT
319168 GCGGAGAATT
Statistics
Matches: 62, Mismatches: 6, Indels: 4
0.86 0.08 0.06
Matches are distributed among these distances:
51 33 0.53
52 1 0.02
53 28 0.45
ACGTcount: A:0.34, C:0.11, G:0.23, T:0.32
Consensus pattern (51 bp):
GTTGGAGTATCCCCGATTATGAAAAATTAGTGTTTTGAAAATAAAATCGAA
Found at i:321617 original size:19 final size:17
Alignment explanation
Indices: 321593--321653 Score: 58
Period size: 19 Copynumber: 3.6 Consensus size: 17
321583 CGATACATTA
321593 TATCGATACATCACTTGTG
1 TATCGATACA-CACTT-TG
321612 TATCGAT--ACA--TTG
1 TATCGATACACACTTTG
321625 TATCGATACAACACTTATG
1 TATCGATAC-ACACTT-TG
321644 TATCGATACA
1 TATCGATACA
321654 AATCGCTGAA
Statistics
Matches: 36, Mismatches: 0, Indels: 13
0.73 0.00 0.27
Matches are distributed among these distances:
13 9 0.25
14 1 0.03
16 5 0.14
17 1 0.03
18 2 0.06
19 18 0.50
ACGTcount: A:0.33, C:0.20, G:0.13, T:0.34
Consensus pattern (17 bp):
TATCGATACACACTTTG
Found at i:321628 original size:13 final size:13
Alignment explanation
Indices: 321610--321634 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
321600 ACATCACTTG
321610 TGTATCGATACAT
1 TGTATCGATACAT
321623 TGTATCGATACA
1 TGTATCGATACA
321635 ACACTTATGT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:321629 original size:32 final size:32
Alignment explanation
Indices: 321578--321653 Score: 116
Period size: 32 Copynumber: 2.4 Consensus size: 32
321568 GCAGTAGCTT
* * *
321578 TGTAGCGATACATTATATCGATACATCACTTG
1 TGTATCGATACATTATATCGATACAACACTTA
*
321610 TGTATCGATACATTGTATCGATACAACACTTA
1 TGTATCGATACATTATATCGATACAACACTTA
321642 TGTATCGATACA
1 TGTATCGATACA
321654 AATCGCTGAA
Statistics
Matches: 40, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
32 40 1.00
ACGTcount: A:0.33, C:0.18, G:0.14, T:0.34
Consensus pattern (32 bp):
TGTATCGATACATTATATCGATACAACACTTA
Found at i:322956 original size:59 final size:59
Alignment explanation
Indices: 322486--323311 Score: 924
Period size: 55 Copynumber: 14.3 Consensus size: 59
322476 AAAAAGTGTA
* * *
322486 TCCTGCTCTTTGAGGACTAAAAAGTGCCACCAACTCGTGTGGGCTTT----GAAAA-GCG
1 TCCTGCTCTTTGAGGACT-GAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGAAAAGGCG
* *
322541 TCTTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTT--AAG---AGGTG
1 TCCTGCTCTTTGAGGACTG-AAGGTGCCACCAACTTGTGTGGGCTTTAAAAGAAAAGGCG
* ** *
322596 TCCTACTCTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTT----G-AAAGGTG
1 TCCTGCTCTTTGAGGACT-GAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGAAAAGGCG
* * *
322651 TCCTGCTCTTTGGGGACTGAAAGGTGCCACCAACTTGTATGGGCTTT--AAG---AGGTG
1 TCCTGCTCTTTGAGGACTG-AAGGTGCCACCAACTTGTGTGGGCTTTAAAAGAAAAGGCG
** * * *
322706 TCCTGCTCTTTGAGGACTGGAAAATGCCACTAACTTGTGTGGGCTTT----G-AAATGTG
1 TCCTGCTCTTTGAGGACT-GAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGAAAAGGCG
* ** *
322761 TCCTGCTCTTTAAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTT----G-AAAGGGG
1 TCCTGCTCTTTGAGGACT-GAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGAAAAGGCG
* * * *
322816 TCCTGCCCTTTGGGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAAGAAAAAGCA
1 TCCTGCTCTTTGAGGACTG-AAGGTGCCACCAACTTGTGTGGGCTTT-AAAAGAAAAGGCG
* * *
322877 TCCTTCTCTTTGAGGACTGAAGGTGCCACCAACTTGGGTGGGCTTTAAAAGAAAAGGTG
1 TCCTGCTCTTTGAGGACTGAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGAAAAGGCG
322936 TCCTGCTCTTTGAGGACTGAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGAAAAGGCG
1 TCCTGCTCTTTGAGGACTGAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGAAAAGGCG
*
322995 TCCTGCTCTTTGAGGACTGAAGGTGCCACCAACTTATGTGGGCTTTAAAAGAAAAGGCG
1 TCCTGCTCTTTGAGGACTGAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGAAAAGGCG
*
323054 TCCTGCTCTTTGAGGATACTAAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGAAAAGGCG
1 TCCTGCTCTTTGAGG--ACTGAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGAAAAGGCG
* * * *
323115 TCCTGCACTTTGAGGACTGAAGGTGCCACCAACTTGTGTGGGCTGTAAAAGAAAATGTG
1 TCCTGCTCTTTGAGGACTGAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGAAAAGGCG
* **
323174 TCCTGCTTTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTTAAAAGAAAAGGCG
1 TCCTGCTCTTTGAGGACT-GAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGAAAAGGCG
** *
323234 TCCTGCTCTTTGAGGACTGGAAAATGCCACCAACTTGTG-GGAGCTTTTAAAAGGAAAAGGCA
1 TCCTGCTCTTTGAGGACT-GAAGGTGCCACCAACTTGTGTGG-GC-TTTAAAA-GAAAAGGCG
323296 T-CTAGCTCTTTGAGGA
1 TCCT-GCTCTTTGAGGA
323312 GTAAAAAGCG
Statistics
Matches: 685, Mismatches: 59, Indels: 47
0.87 0.07 0.06
Matches are distributed among these distances:
53 2 0.00
54 3 0.00
55 270 0.39
56 2 0.00
57 2 0.00
59 197 0.29
60 103 0.15
61 85 0.12
62 21 0.03
ACGTcount: A:0.25, C:0.20, G:0.28, T:0.27
Consensus pattern (59 bp):
TCCTGCTCTTTGAGGACTGAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGAAAAGGCG
Found at i:324331 original size:20 final size:20
Alignment explanation
Indices: 324308--324345 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
324298 TCTTTGTTTT
324308 ATTTT-TTTTTGTTTTTTTCG
1 ATTTTGTTTTT-TTTTTTTCG
324328 ATTTTGTTTTTTTTTTTT
1 ATTTTGTTTTTTTTTTTT
324346 GAAGAGAAGG
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
20 12 0.71
21 5 0.29
ACGTcount: A:0.05, C:0.03, G:0.08, T:0.84
Consensus pattern (20 bp):
ATTTTGTTTTTTTTTTTTCG
Found at i:326050 original size:17 final size:17
Alignment explanation
Indices: 326028--326062 Score: 70
Period size: 17 Copynumber: 2.1 Consensus size: 17
326018 TTCAACCTTG
326028 TAGTGAAAGGGTAATGA
1 TAGTGAAAGGGTAATGA
326045 TAGTGAAAGGGTAATGA
1 TAGTGAAAGGGTAATGA
326062 T
1 T
326063 TTCCATCAGG
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.40, C:0.00, G:0.34, T:0.26
Consensus pattern (17 bp):
TAGTGAAAGGGTAATGA
Found at i:337234 original size:52 final size:52
Alignment explanation
Indices: 337117--337292 Score: 171
Period size: 52 Copynumber: 3.4 Consensus size: 52
337107 AAATAACGAG
* ** * * *
337117 GTTGGAGTATCCTCGATT-GTGAAAAAATTGGTGTTTTTGGAAATAAAATCAGA
1 GTTGGAGTATCCCCGATTAAAGGAAAAATTGGTG-TTTTGAAAATAAAA-CCGA
* *
337170 GTTAGAGCATCCCCGATTAAAGG-AAAATTGGTGTTTTGAAAATAAAACCGGA
1 GTTGGAGTATCCCCGATTAAAGGAAAAATTGGTGTTTTGAAAATAAAACC-GA
** * *
337222 GTTGGAGTATCCCCGATT-GTGGAAAAATTAGTGTTTT-AGCAATAAAACCGA
1 GTTGGAGTATCCCCGATTAAAGGAAAAATTGGTGTTTTGA-AAATAAAACCGA
337273 GGTTGGAGTATCCCCGATTA
1 -GTTGGAGTATCCCCGATTA
337293 TGAGAAATCA
Statistics
Matches: 103, Mismatches: 14, Indels: 12
0.80 0.11 0.09
Matches are distributed among these distances:
51 6 0.06
52 71 0.69
53 25 0.24
54 1 0.01
ACGTcount: A:0.34, C:0.12, G:0.24, T:0.30
Consensus pattern (52 bp):
GTTGGAGTATCCCCGATTAAAGGAAAAATTGGTGTTTTGAAAATAAAACCGA
Found at i:337330 original size:51 final size:52
Alignment explanation
Indices: 337222--337338 Score: 139
Period size: 51 Copynumber: 2.3 Consensus size: 52
337212 TAAAACCGGA
* * * * *
337222 GTTGGAGTATCCCCGATTGTGGAAAAATTAGTGTTTTAGCAATAAAACCGAG
1 GTTGGAGTATCCCCGATTATGGAAAAATCAATATTTTAGCAATAAAACAGAG
* * *
337274 GTTGGAGTATCCCCGATTAT-GAGAAATCAATATTTTAAG-AATAAAGCAGGG
1 GTTGGAGTATCCCCGATTATGGAAAAATCAATATTTT-AGCAATAAAACAGAG
337325 GTTGGAGTATCCCC
1 GTTGGAGTATCCCC
337339 TCGAAAATAA
Statistics
Matches: 56, Mismatches: 8, Indels: 3
0.84 0.12 0.04
Matches are distributed among these distances:
51 35 0.62
52 21 0.38
ACGTcount: A:0.32, C:0.15, G:0.25, T:0.28
Consensus pattern (52 bp):
GTTGGAGTATCCCCGATTATGGAAAAATCAATATTTTAGCAATAAAACAGAG
Found at i:337384 original size:27 final size:27
Alignment explanation
Indices: 337322--337396 Score: 107
Period size: 27 Copynumber: 2.7 Consensus size: 27
337312 GAATAAAGCA
337322 GGGGTTGGAGTATCCCCTCGA-AAATAAC
1 GGGGTTGGAGTAT-CCC-CGATAAATAAC
* *
337350 GGGGTTGGAGTATCCCCGATGATTAAC
1 GGGGTTGGAGTATCCCCGATAAATAAC
337377 GGGGTTGGAGTATCCCCGAT
1 GGGGTTGGAGTATCCCCGAT
337397 TGTGAAAAAT
Statistics
Matches: 44, Mismatches: 2, Indels: 3
0.90 0.04 0.06
Matches are distributed among these distances:
26 3 0.07
27 28 0.64
28 13 0.30
ACGTcount: A:0.23, C:0.20, G:0.33, T:0.24
Consensus pattern (27 bp):
GGGGTTGGAGTATCCCCGATAAATAAC
Found at i:337495 original size:51 final size:52
Alignment explanation
Indices: 337382--337502 Score: 147
Period size: 51 Copynumber: 2.3 Consensus size: 52
337372 TTAACGGGGT
* * * *
337382 TGGAGTATCCCCGATTGTGAAAAATTGGTGTTTTTTGGAAATAAAATCGAAGT
1 TGGAGTATCCCCGATTATGAAAAATTAGTG-TTTTTGAAAATAAAATCGAAGA
* *
337435 TTGAGTATCCCCGATTAT-AGAAAATTAGTG-TTTTGAAAATAAAATCGGAGA
1 TGGAGTATCCCCGATTATGA-AAAATTAGTGTTTTTGAAAATAAAATCGAAGA
*
337486 TGGAATATCCCCGATTA
1 TGGAGTATCCCCGATTA
337503 CGGAGAATTG
Statistics
Matches: 59, Mismatches: 8, Indels: 4
0.83 0.11 0.06
Matches are distributed among these distances:
51 33 0.56
52 1 0.02
53 25 0.42
ACGTcount: A:0.35, C:0.12, G:0.21, T:0.32
Consensus pattern (52 bp):
TGGAGTATCCCCGATTATGAAAAATTAGTGTTTTTGAAAATAAAATCGAAGA
Found at i:339569 original size:13 final size:13
Alignment explanation
Indices: 339551--339576 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
339541 CAAAGATCCA
339551 TGTATCGATACAT
1 TGTATCGATACAT
339564 TGTATCGATACAT
1 TGTATCGATACAT
339577 GGAATAATGT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:339661 original size:32 final size:32
Alignment explanation
Indices: 339614--339689 Score: 116
Period size: 32 Copynumber: 2.4 Consensus size: 32
339604 GCAGTAGCTT
* * *
339614 TGTAGCGATACATTGTATCGATACATCACTTG
1 TGTATCGATACATTGTATCGATACAACACTTA
*
339646 TGTATCGATAGATTGTATCGATACAACACTTA
1 TGTATCGATACATTGTATCGATACAACACTTA
339678 TGTATCGATACA
1 TGTATCGATACA
339690 AATCGCTGAA
Statistics
Matches: 39, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
32 39 1.00
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.34
Consensus pattern (32 bp):
TGTATCGATACATTGTATCGATACAACACTTA
Found at i:339753 original size:21 final size:22
Alignment explanation
Indices: 339727--339784 Score: 75
Period size: 21 Copynumber: 2.7 Consensus size: 22
339717 GTTGGGACCT
* *
339727 TGTATCGATACATTTGTA-GAA
1 TGTATCGATACATTTGCACAAA
*
339748 TGTATCGATACA-TTCCACAAA
1 TGTATCGATACATTTGCACAAA
339769 TGTATCGATACATTTG
1 TGTATCGATACATTTG
339785 GATAAACGTG
Statistics
Matches: 31, Mismatches: 4, Indels: 3
0.82 0.11 0.08
Matches are distributed among these distances:
20 3 0.10
21 26 0.84
22 2 0.06
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.36
Consensus pattern (22 bp):
TGTATCGATACATTTGCACAAA
Found at i:342815 original size:15 final size:15
Alignment explanation
Indices: 342795--342833 Score: 78
Period size: 15 Copynumber: 2.6 Consensus size: 15
342785 ACCAATTGTC
342795 CCATGATGATGATGA
1 CCATGATGATGATGA
342810 CCATGATGATGATGA
1 CCATGATGATGATGA
342825 CCATGATGA
1 CCATGATGA
342834 AATGAATGCA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 24 1.00
ACGTcount: A:0.33, C:0.15, G:0.26, T:0.26
Consensus pattern (15 bp):
CCATGATGATGATGA
Found at i:345016 original size:97 final size:97
Alignment explanation
Indices: 344850--345072 Score: 401
Period size: 97 Copynumber: 2.3 Consensus size: 97
344840 TAAAAAAATA
344850 GGGTTGGAGTATCCCCTCGGAGGAATGGGGTTGGAGTGTCCCCGATGATGACAATTTAAGCGAGA
1 GGGTTGGAGTATCCCCTCGGAGGAATGGGGTTGGAGTGTCCCCGATGATGACAATTTAAGCGAGA
344915 ATAAGATTGGAATCTTGAGAAGTTTAAAAGCG
66 ATAAGATTGGAATCTTGAGAAGTTTAAAAGCG
*
344947 GGGTTGGAGTATCCCCTCGGAGGAATGGGGTTGGAGTGTCCCCGATGATGACAATTTAAGTGAGA
1 GGGTTGGAGTATCCCCTCGGAGGAATGGGGTTGGAGTGTCCCCGATGATGACAATTTAAGCGAGA
*
345012 ATAAGATTTGAATCTTGAGAAGTTTAAAAGCG
66 ATAAGATTGGAATCTTGAGAAGTTTAAAAGCG
* * *
345044 AGGTTAGAGTATCCCCTCAGAGGAATGGG
1 GGGTTGGAGTATCCCCTCGGAGGAATGGG
345073 TTTAGAGTAT
Statistics
Matches: 121, Mismatches: 5, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
97 121 1.00
ACGTcount: A:0.29, C:0.13, G:0.33, T:0.25
Consensus pattern (97 bp):
GGGTTGGAGTATCCCCTCGGAGGAATGGGGTTGGAGTGTCCCCGATGATGACAATTTAAGCGAGA
ATAAGATTGGAATCTTGAGAAGTTTAAAAGCG
Found at i:348429 original size:476 final size:476
Alignment explanation
Indices: 347489--358586 Score: 13917
Period size: 476 Copynumber: 23.4 Consensus size: 476
347479 GGTGTCTACA
* * * *
347489 ATTAGGAACCAAAAGCACATTTCCTTT-ATTAG-ATACATGACATTGATGCTTTGGTGACGCAAA
1 ATTAGGAAACAAAAACACA-TTCCTTTCATTAGCGTACCTGACATTGATGCTTTGGTGACGCAAA
* * * * *
347552 A-AGAGCTTTTCTTACCAACGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGAGAAACTAT
65 ATA-CGCTTTTCCTACCACCATTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGAGAAACTAG
* * * * ** *
347616 AATAGCCATAATTATCCTTATTCTTTTCT-GAATTAGGCATTATAAACGTAGTCTTCTCAAAAGG
129 AATAGTCATACTAATCCCTATTCTTTTCTAG-ATTAGGCACCATAAACGTAGTCTTCTCATAAGG
* *
347680 ATACACGATATTCATGCTTTGGTTTTGAAAGAAAGGTTTTCTTCCCTCCAATTTTTGTAAAGTCT
193 ATACACGATATTCATGCTTTGGTTTTGAAAGAAAGGCTTTCTTCCCCCCAATTTTTGTAAAGTCT
*
347745 GACTTCGTGCCTTAAACGAGACAAACATTGATTCTAGTAATGGCCTTCATTCATTTTGTAATTAG
258 GACTTCGTGCCTCAAACGAGACAAACATTGATTCTAGTAATGGCCTTCATTCATTTTGTAATTAG
*
347810 CCACTATAAACACATTCTTCACATTAGGATAAAGGATAATGATGATTTTCTTTTGCATGAAAATC
323 GCACTATAAACACATTCTTCACATTAGGATAAAGGATAATGATGATTTTCTTTTGCATGAAAATC
* * ** * *
347875 TTTTCTTTTCCGTATTTATATTAAAATCAAAGTTCT-CCCCCTAAATAAGGCAAGCATCGATTCT
388 TTTTCTTTGCCTTATTTACCTTAAAATCAAAGTT-TATCCCTTAAATAAGGCAAGCATCGATTCT
347939 CGTAATAGTCTCCATTCTTTTCAAG
452 CGTAATAGTCTCCATTCTTTTCAAG
* * * *
347964 ATTGGGAAACAAAAACCCATTCCTTTCATTAGCGTACATGACATTGATGCTTTGGTGAGGCAAAA
1 ATTAGGAAACAAAAACACATTCCTTTCATTAGCGTACCTGACATTGATGCTTTGGTGACGCAAAA
* * *
348029 TATGCTTTTCCTACCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACCT-GA
66 TACGCTTTTCCTACCACCATTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGAGAAA-CTAGA
* * * *
348093 AGAGTCATACTAATCCCTGTTCTTTTCTTA-ATTACGCACCGTAAACGTAGTCTTCTCATAAGGA
130 ATAGTCATACTAATCCCTATTCTTTTC-TAGATTAGGCACCATAAACGTAGTCTTCTCATAAGGA
* *
348157 TACACGATATTCATGCCTTGGTTTTGAAAGAAAGGCTTTCTTCCCCCCAATTTTTATAAAGTCTG
194 TACACGATATTCATGCTTTGGTTTTGAAAGAAAGGCTTTCTTCCCCCCAATTTTTGTAAAGTCTG
** *
348222 ACTTCGTGCCTCAAATAAGACAAACATTGATTCTAGTAATGCCCTTCATTCATTTTGTAATTAGG
259 ACTTCGTGCCTCAAACGAGACAAACATTGATTCTAGTAATGGCCTTCATTCATTTTGTAATTAGG
348287 CA-TCATAAACACATTCTTCACATTAGGATAAAGGATAATGATGATTTTCTTTTGCATGAAAATC
324 CACT-ATAAACACATTCTTCACATTAGGATAAAGGATAATGATGATTTTCTTTTGCATGAAAATC
* * *
348351 TTTTCTTTGCCTCATTTACATTAAAATCAAAGTTTATCCCTTAAATAAGGCAAGCATCGATCCTC
388 TTTTCTTTGCCTTATTTACCTTAAAATCAAAGTTTATCCCTTAAATAAGGCAAGCATCGATTCTC
* * *
348416 ATAACAATCTCCATT-TTCTTCAAG
453 GTAATAGTCTCCATTCTT-TTCAAG
* * * *
348440 ATTGGGAAACAAAAACACACTT-TTTTCATTAGCGTACTTGACATTGATGCTTTGGTGATGCAAA
1 ATTAGGAAACAAAAACACA-TTCCTTTCATTAGCGTACCTGACATTGATGCTTTGGTGACGCAAA
* *
348504 ATACGTTTTTCCTACCACCATTTTTCATAGAATCAAAGTTTGTCTCTTAAATAAGAGAAACTAGA
65 ATACGCTTTTCCTACCACCATTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGAGAAACTAGA
* *
348569 ATAGTCAAACTAATCCCTATTCTTTTCAAGATTAGGCACCATAAACGTAGTCTTCTCATAAGGAT
130 ATAGTCATACTAATCCCTATTCTTTTCTAGATTAGGCACCATAAACGTAGTCTTCTCATAAGGAT
*
348634 ACACGATATTCATGCTTTGGTTTTGAAAGAAAGGCTTTCTTCCCCCCAATTTCTGTAAAGTCTGA
195 ACACGATATTCATGCTTTGGTTTTGAAAGAAAGGCTTTCTTCCCCCCAATTTTTGTAAAGTCTGA
* * * * *
348699 CATCGTGCCTCAAATGAGACAAACATTGATTCTAGAAATAGCCTTCATTCGTTTTGTAATTAGGC
260 CTTCGTGCCTCAAACGAGACAAACATTGATTCTAGTAATGGCCTTCATTCATTTTGTAATTAGGC
* * *
348764 ACTATAAACACATTCTTCACATTTGGATAAAGGATAATGATGATTTTCTTTTGCATGGAAATCCT
325 ACTATAAACACATTCTTCACATTAGGATAAAGGATAATGATGATTTTCTTTTGCATGAAAATCTT
* * *
348829 TTCTTTGCCTTATTTACCTTAAATTCAATGTTTATCCCTTAAATAGGGCAAGCATCGATTCTCGT
390 TTCTTTGCCTTATTTACCTTAAAATCAAAGTTTATCCCTTAAATAAGGCAAGCATCGATTCTCGT
348894 AATAGTCTCCATTCTTTTCAAG
455 AATAGTCTCCATTCTTTTCAAG
* * *
348916 AATGGGAAACAAAAAC-CAATTCCTTTCATTAGCGTACCTGACATTGATGCTTTGGTGATGCAAA
1 ATTAGGAAACAAAAACAC-ATTCCTTTCATTAGCGTACCTGACATTGATGCTTTGGTGACGCAAA
* * ** *
348980 ATGCACTTTTCCTACCACTTTTTTTGATAGAATCAAAGTTTGTCTCTTAAGTAAGAGAAACTAGA
65 ATACGCTTTTCCTACCACCATTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGAGAAACTAGA
* * * ** *
349045 ATAGTCAAACTAATCCCTGTTCTTTTC-AGGATTAAGCACTGTAAACGTAGTCTACTCATAAGGA
130 ATAGTCATACTAATCCCTATTCTTTTCTA-GATTAGGCACCATAAACGTAGTCTTCTCATAAGGA
* * **
349109 TACACGATATTGATGCTTTGGTTTTGAAAGAAAGGCTATCTTCTGCCCAATTTTTGTAAAGTCTG
194 TACACGATATTCATGCTTTGGTTTTGAAAGAAAGGCTTTCTTCCCCCCAATTTTTGTAAAGTCTG
* * ** * * * *
349174 ACATCGTGCCTCGAGTGACATAAACATTAATTCTAGAAATGGCCTTCATTCATTTTGTAATTAGG
259 ACTTCGTGCCTCAAACGAGACAAACATTGATTCTAGTAATGGCCTTCATTCATTTTGTAATTAGG
* * * *
349239 CACTATAAATACATTCTTCTCATTAAG-TATAGGATAATGATGATTTTCTTTT-CTAT-AGAAAT
324 CACTATAAACACATTCTTCACATTAGGATAAAGGATAATGATGATTTTCTTTTGC-ATGA-AAAT
* * * *
349301 CTTTTCTTTGCCTTATTTACATTAAAATCAAAGTTCATCACTTAAATAATGCAAGCATCGATTCT
387 CTTTTCTTTGCCTTATTTACCTTAAAATCAAAGTTTATCCCTTAAATAAGGCAAGCATCGATTCT
*
349366 CATAATAGTCTCCATTCTTTTCAAG
452 CGTAATAGTCTCCATTCTTTTCAAG
* *
349391 ATTGGGAAACAAAAACACATTCCTTTCATTAGCGTACCTGACATTGATGCTTTGGTGATGCAAAA
1 ATTAGGAAACAAAAACACATTCCTTTCATTAGCGTACCTGACATTGATGCTTTGGTGACGCAAAA
* * *
349456 TACGCTTTTCCTTCCACCATTTTTGATAGAATAAAAGTTTGCCTCTTAAATAAGAGAAACTAGAA
66 TACGCTTTTCCTACCACCATTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGAGAAACTAGAA
* *
349521 TAGTCATACTAATCCCTGTTCTTTTCTAGATTACGCACCATAAACGTAGTCTTCTCATAAGGATA
131 TAGTCATACTAATCCCTATTCTTTTCTAGATTAGGCACCATAAACGTAGTCTTCTCATAAGGATA
* * * * *
349586 CCCGATATTCATGCTTT-GTCTTTAAAAGAAAGGCTTTCTTCTCCCTAATTTTTGTAATGTCTGA
196 CACGATATTCATGCTTTGGT-TTTGAAAGAAAGGCTTTCTTCCCCCCAATTTTTGTAAAGTCTGA
* * * *
349650 CTTCTTGCCTCAAACAAGACAAACATTAATTCTAGTAATGGCCTTCATTCATTTTGAAATTAGGC
260 CTTCGTGCCTCAAACGAGACAAACATTGATTCTAGTAATGGCCTTCATTCATTTTGTAATTAGGC
* * * * *
349715 ACTATAAACACAATCTCCATATTAGAATAAAGGATAATGATGATTTTCTTTTACATGAAAATCTT
325 ACTATAAACACATTCTTCACATTAGGATAAAGGATAATGATGATTTTCTTTTGCATGAAAATCTT
* * * *
349780 TTGTTTGCCTTATTTACCTTAAAATCAAAGTTCATCCCTTAAATACGGTAAGCATCGATTCTCGT
390 TTCTTTGCCTTATTTACCTTAAAATCAAAGTTTATCCCTTAAATAAGGCAAGCATCGATTCTCGT
*
349845 AATAGTCTTCATTCTTTTCAAG
455 AATAGTCTCCATTCTTTTCAAG
* * ** *
349867 ATTGGGAAACGAAAACACATTCCTTTCATTAATGTACCTAACATTGATGCTTTGGTGACGCAAAA
1 ATTAGGAAACAAAAACACATTCCTTTCATTAGCGTACCTGACATTGATGCTTTGGTGACGCAAAA
* * * *
349932 TATGCTTTTCCTACCATCGTTTTTGATAGAATGAAAGTTTGTCTCTTAAAT-A-AG--A-T-GAA
66 TACGCTTTTCCTACCACCATTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGAGAAACTAGAA
* * *
349991 TTGTCAAACTAATCCCTGTTCTTTT-TAGGATTAGGCACC----A---A-TC--CT--T----AT
131 TAGTCATACTAATCCCTATTCTTTTCTA-GATTAGGCACCATAAACGTAGTCTTCTCATAAGGAT
** * * * *
350039 ACTTGATATTGATGCTTTCGTTTTGAAAAAAAAGGCTTCCTTCCCCCCAA-TTTTGTAAAGTCTG
195 ACACGATATTCATGCTTTGGTTTTG-AAAGAAAGGCTTTCTTCCCCCCAATTTTTGTAAAGTCTG
* * * **
350103 AGTTC-TGCCTCAAATGAGACAACCATTGATTCTTTTAATGGCCTTCATTCATTTTGTAATTAGG
259 ACTTCGTGCCTCAAACGAGACAAACATTGATTCTAGTAATGGCCTTCATTCATTTTGTAATTAGG
* * *
350167 CACTATAAACACATTCTCCACATTAGAATAAAGGATAATGATGATTTTCTTTT-CTGTGAAAATC
324 CACTATAAACACATTCTTCACATTAGGATAAAGGATAATGATGATTTTCTTTTGC-ATGAAAATC
* * * *
350231 TTTTGTTTGCCTTATTTACCTTAAAATCAAAGTTTATCCTTTAAATAAGGTAAGCATTGATTCTC
388 TTTTCTTTGCCTTATTTACCTTAAAATCAAAGTTTATCCCTTAAATAAGGCAAGCATCGATTCTC
* *
350296 GTAACAATCTCCATTCTTTTCAAG
453 GTAATAGTCTCCATTCTTTTCAAG
* **
350320 ATTAGGAAACAAAAACACATTCCTTTCATTTGCAAACCTGACATTGATGCTTTGGTGACGCAAAA
1 ATTAGGAAACAAAAACACATTCCTTTCATTAGCGTACCTGACATTGATGCTTTGGTGACGCAAAA
* * * * *
350385 TATGCTTTTTCGACCACCATTTTTGATAGAATCAAAGTTTATCTCTTAAATAAGAGAAGCTAGAA
66 TACGCTTTTCCTACCACCATTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGAGAAACTAGAA
* * * *
350450 TAGTC-TTCTAATCCCTGTTCTTTTCTAGATTGGGCACTATAAACGTAGTCTTCTCATAAGGATA
131 TAGTCATACTAATCCCTATTCTTTTCTAGATTAGGCACCATAAACGTAGTCTTCTCATAAGGATA
* * ** * * *
350514 CACGATATTGAAGCTTTGGTTTTGAAAGAAAGGCAATCTTCTCCCCAATTTTTTTGAAGTCTGAC
196 CACGATATTCATGCTTTGGTTTTGAAAGAAAGGCTTTCTTCCCCCCAATTTTTGTAAAGTCTGAC
** *
350579 TTCACGCCTCAAACGAGACAAACATTAATTCTAGTAATGGCCTTCATTCATTTTGTAATTAGGCA
261 TTCGTGCCTCAAACGAGACAAACATTGATTCTAGTAATGGCCTTCATTCATTTTGTAATTAGGCA
* * * * *
350644 ATATAAACAAATTCTTCACATTAGAATAAAGGATAATGATGTTTTTCTTTTGTAT-AGAAATCTT
326 CTATAAACACATTCTTCACATTAGGATAAAGGATAATGATGATTTTCTTTTGCATGA-AAATCTT
* * * * ** *
350708 TTCTTTGCCTTATTTACATTAAAATCAAAGTTCATCCTTTAAATAAGGCATGCGCCGATTCTCAT
390 TTCTTTGCCTTATTTACCTTAAAATCAAAGTTTATCCCTTAAATAAGGCAAGCATCGATTCTCGT
*
350773 TATAGTCTCCATTCTTTTCAAG
455 AATAGTCTCCATTCTTTTCAAG
*
350795 ATTAGGAAACAAAAACACATTCCTTTCATTAGCGTACATGACATTGATGCTTT-GTGACGCAAAA
1 ATTAGGAAACAAAAACACATTCCTTTCATTAGCGTACCTGACATTGATGCTTTGGTGACGCAAAA
* * * * *
350859 TACGCTTTTCCTACCACCGTTTTTGATAGAATCATAGTTTGCCTTTTAAATAAGATAAACTAGAA
66 TACGCTTTTCCTACCACCATTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGAGAAACTAGAA
* ** * * *
350924 TAGTCAAACTAATCTTTGTTCTTTT-TAGGATTAGGCACCATAAATGAAGTCTTCTCATAAGGAT
131 TAGTCATACTAATCCCTATTCTTTTCTA-GATTAGGCACCATAAACGTAGTCTTCTCATAAGGAT
* * * * *
350988 ACACGATATTCATGCTTTTGTTTTGGAAGAAAGGCTTTCATCCCTCTAATTTTTGTAAAGTCTGA
195 ACACGATATTCATGCTTTGGTTTTGAAAGAAAGGCTTTCTTCCCCCCAATTTTTGTAAAGTCTGA
* * * * *
351053 CATCGTGCCTCAAATGAGACAAACATTGATTCTCGTAACGGCTTTCATTCATTTTGTAATTAGGC
260 CTTCGTGCCTCAAACGAGACAAACATTGATTCTAGTAATGGCCTTCATTCATTTTGTAATTAGG-
* *
351118 CACTATAAACACATTCTTCACATTAGGATAAAGGATAATGATGATTTTCTTTTGCATGGAAATCG
324 CACTATAAACACATTCTTCACATTAGGATAAAGGATAATGATGATTTTCTTTTGCATGAAAATCT
* * *
351183 TTTCTTTGCCTTATTTACCTTAAAATCAAAGTTCATCCCGTAAATAAGGTAAGCATCGATTCTCG
389 TTTCTTTGCCTTATTTACCTTAAAATCAAAGTTTATCCCTTAAATAAGGCAAGCATCGATTCTCG
* * *
351248 CAACAGTCTCCATTCTTTTCCAG
454 TAATAGTCTCCATTCTTTTCAAG
* * * * * * * *
351271 ACTAGGAACCAAAAGCACCTTCCCTTCATTAG-GATACATGACATTGATGCTTTGGTGATGGAAA
1 ATTAGGAAACAAAAACACATTCCTTTCATTAGCG-TACCTGACATTGATGCTTTGGTGACGCAAA
* * ** * * ** *
351335 AAAAGCTTTTTTTACCATCATTTTTGATAGAATTAACTTTTGTCTCTTAAATAAGACAAAC-ATG
65 ATACGCTTTTCCTACCACCATTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGAGAAACTA-G
* * * * ** *
351399 AAAAGTCAAACTAATCCCTATACTTTTCAAGATTAGGCATTACAAACGTAGTCTTCTCATAAGGA
129 AATAGTCATACTAATCCCTATTCTTTTCTAGATTAGGCACCATAAACGTAGTCTTCTCATAAGGA
* * * * * *** *
351464 TACACTATATTGACGCTTTGGTTTTGCAAGAAAAGCTTTCTTCATTCCAATTTTTGTAAAGTATG
194 TACACGATATTCATGCTTTGGTTTTGAAAGAAAGGCTTTCTTCCCCCCAATTTTTGTAAAGTCTG
* * *
351529 ACTTC-TGCCTCAAGCGAGACAAA-ATTGATTCTAGTAATGGGCTTTATTCATTTTGTAATTAGG
259 ACTTCGTGCCTCAAACGAGACAAACATTGATTCTAGTAATGGCCTTCATTCATTTTGTAATTAGG
* * * *
351592 CACTATAAACACATTCTTCATATTCGGATAAAGGATAATGATGACTTTCTTTTGCATGGAAATCT
324 CACTATAAACACATTCTTCACATTAGGATAAAGGATAATGATGATTTTCTTTTGCATGAAAATCT
* *
351657 TTTCTTTGCCTTATTCACCTTAAAATCAAAGTTTATCCCTTAAATAAGGCAAGCATCGATTCTCA
389 TTTCTTTGCCTTATTTACCTTAAAATCAAAGTTTATCCCTTAAATAAGGCAAGCATCGATTCTCG
351722 TAATAGTCTCCATTCTTTTCAAG
454 TAATAGTCTCCATTCTTTTCAAG
* ** * * * * * *
351745 ATTCGGATCCAAAAGCACATTCCCTTCATTAG-GATACATGACATTGATGTTTTGGTGATGTAAA
1 ATTAGGAAACAAAAACACATTCCTTTCATTAGCG-TACCTGACATTGATGCTTTGGTGACGCAAA
* * * * *
351809 AAAAGCTTTTCTTACCACCGTTTTTTATAGAATCAAAGTTTGTCTCTTAAA-AAGGAGAAACTAG
65 ATACGCTTTTCCTACCACCATTTTTGATAGAATCAAAGTTTGTCTCTTAAATAA-GAGAAACTAG
*
351873 AATAGTCATACTAATCCTTATTCTTTTC-AGGATTAGGCACCATAAACGTAGTCTTCTCATAAGG
129 AATAGTCATACTAATCCCTATTCTTTTCTA-GATTAGGCACCATAAACGTAGTCTTCTCATAAGG
* * * *
351937 ATACACGATATTAAGGCTTTGGTTTTGAAA-AAAGGCCTTCTTTCCCCCAATTTTTGTAAAGTCT
193 ATACACGATATTCATGCTTTGGTTTTGAAAGAAAGGCTTTCTTCCCCCCAATTTTTGTAAAGTCT
* * * * * * *
352001 CACATCATGCCTCAAGCGAGACAAACATTGACTCTAGAAATGGCCTTCATTCATTTTGTAATTAT
258 GACTTCGTGCCTCAAACGAGACAAACATTGATTCTAGTAATGGCCTTCATTCATTTTGTAATTAG
* * * *
352066 GCACTATAAAAACATTTTTCACATTAGGATAAAGGATAATCATGATTTTCTTTTGCATGGAAATC
323 GCACTATAAACACATTCTTCACATTAGGATAAAGGATAATGATGATTTTCTTTTGCATGAAAATC
* * *
352131 TTTTCTTTGCCTTATTTACCTTAAAATCAAAGTTTATCCCTCAAATAAGGCAAGCATCAAATCTC
388 TTTTCTTTGCCTTATTTACCTTAAAATCAAAGTTTATCCCTTAAATAAGGCAAGCATCGATTCTC
* *
352196 ATAATAGTCTCCGTTCTTTTCAAG
453 GTAATAGTCTCCATTCTTTTCAAG
* * * *
352220 ATTGGGAAACAAAAAACACATTCCTCTCAGTAGCTTACCTGACATTGATGCTTTGGTGACGCAAA
1 ATTAGGAAAC-AAAAACACATTCCTTTCATTAGCGTACCTGACATTGATGCTTTGGTGACGCAAA
* *
352285 ATACGCTTTTCCTACCACTATTTTTAATAGAATCAAAGTTTGTCTCTTAAATAAGAGAAACTAGA
65 ATACGCTTTTCCTACCACCATTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGAGAAACTAGA
* * ** *
352350 ATAGGCATACTAATCCTTATTCTTTTCTAGATTAGGCGTCGTAAACGTAGTCTTCTCATAAGGAT
130 ATAGTCATACTAATCCCTATTCTTTTCTAGATTAGGCACCATAAACGTAGTCTTCTCATAAGGAT
* * * * *
352415 AAACGGTATTTATGCTTTGGTTTTGAAAGAAAGGCTTTCTTCTCCCCAATTTTTGTAAAGTTTGA
195 ACACGATATTCATGCTTTGGTTTTGAAAGAAAGGCTTTCTTCCCCCCAATTTTTGTAAAGTCTGA
* * *
352480 CTTCATGCCTCAAACGAGACAAACATTAATTCTAGTAATGGCCTTCATTCATTTTGTAGTTAGGC
260 CTTCGTGCCTCAAACGAGACAAACATTGATTCTAGTAATGGCCTTCATTCATTTTGTAATTAGGC
* * * * *
352545 ACTGTAAACACATTCTTCTCATTAGGATGAAGGATAATGATGATTTTCTTTTGTAT-AGAAATAT
325 ACTATAAACACATTCTTCACATTAGGATAAAGGATAATGATGATTTTCTTTTGCATGA-AAATCT
* * * *
352609 TTTCTTCGCCGTATTTACATTAAAATCAAAGTTCATCCCTTGAAA-AAGGCAAGCATCGATTCTC
389 TTTCTTTGCCTTATTTACCTTAAAATCAAAGTTTATCCCTT-AAATAAGGCAAGCATCGATTCTC
* * * *
352673 TTAATAGTCTGCTTTCTTATCAAG
453 GTAATAGTCTCCATTCTTTTCAAG
* *** ** * * *
352697 ATTGGGAAACAAAAACACATTCCAGCCATTATTGTAAC-GACATTGATGCATTGGTGATGCAAAA
1 ATTAGGAAACAAAAACACATTCCTTTCATTAGCGTACCTGACATTGATGCTTTGGTGACGCAAAA
* ** * * * *
352761 AACATTTTTCCTACCACCGTTTTTGATAGAATTAAAGTTTATCTCTTAAATAAGATAAACTAGAA
66 TACGCTTTTCCTACCACCATTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGAGAAACTAGAA
* * * **
352826 TTGTCA-AGCTTATCCCCATTCTTTT-TAGGATTAGG-TGCATTGAAA-GTAGTCTTCTCATAAG
131 TAGTCATA-CTAATCCCTATTCTTTTCTA-GATTAGGCACCA-T-AAACGTAGTCTTCTCATAAG
* * * *
352887 GATACATGATATTCATGCTTTGGTTTTGTAAGAAAGGCTTTCTTCCCCCTAATTTTTGCAAAGTC
192 GATACACGATATTCATGCTTTGGTTTTGAAAGAAAGGCTTTCTTCCCCCCAATTTTTGTAAAGTC
* * * * *
352952 TGACATCAG-GCCTCAAACCAGACAAACATTGATTCCCA-TGATGGCCTTCATTCATTTTGTAAA
257 TGACTTC-GTGCCTCAAACGAGACAAACATTGATT-CTAGTAATGGCCTTCATTCATTTTGTAAT
* * * *
353015 TAGGCACTATAAACACATTCTTCAC-TTCAGAATTAAGGATAATGATGATTTTTTTTTGCATGGA
320 TAGGCACTATAAACACATTCTTCACATT-AGGATAAAGGATAATGATGATTTTCTTTTGCATGAA
* **
353079 AATCTTTTCTTTGCCTTATTTACCTTAAAATCAAAATTTAT-CCTTAAAATAAGGCAAGCATCTT
384 AATCTTTTCTTTGCCTTATTTACCTTAAAATCAAAGTTTATCCCTT-AAATAAGGCAAGCATCGA
*
353143 TTCTCGTAATATTCTCCATTCTTTTCAAG
448 TTCTCGTAATAGTCTCCATTCTTTTCAAG
* ** ** * *
353172 ATTGGGAGCCAAAAGTACTTTCCCTTT-ATTAG-GATACATGACATTGATGCTTTGGTGACGCAA
1 ATTAGGAAACAAAAACACATT-CCTTTCATTAGCG-TACCTGACATTGATGCTTTGGTGACGCAA
* * *
353235 AA-AGAGCCTTTT-TTACCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGAGAAACT
64 AATA-CG-CTTTTCCTACCACCATTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGAGAAACT
* * * * *
353298 AGAATAGCCATACTAATCCTTGTTCTTTTCTAGATTAGCCACCATAAAGGTAGTCTTCTCATAAG
127 AGAATAGTCATACTAATCCCTATTCTTTTCTAGATTAGGCACCATAAACGTAGTCTTCTCATAAG
* **
353363 GATACACGATATTCATGCTTTGGTTTTGAAACAAAGGCTTTCTTCCTACCAATTTTTGTAAAGTC
192 GATACACGATATTCATGCTTTGGTTTTGAAAGAAAGGCTTTCTTCCCCCCAATTTTTGTAAAGTC
* *
353428 TGACTTCGTGCCTCAAACGAGACAAACGTTGATTCTAGTAATGGCCTTCATTCATTTCGTAATTA
257 TGACTTCGTGCCTCAAACGAGACAAACATTGATTCTAGTAATGGCCTTCATTCATTTTGTAATTA
* * *
353493 GGCAATATAAACACATTCTTCACATTAGGATAAAGGATAATGATGATTTTCTTTTCCACGAAAAT
322 GGCACTATAAACACATTCTTCACATTAGGATAAAGGATAATGATGATTTTCTTTTGCATGAAAAT
* * * * *
353558 CTTTTCTTTGTCTTATTTACATTAAAATCAAAGTTCATCCCTTAATTAAGGCAAGCAACGATTCT
387 CTTTTCTTTGCCTTATTTACCTTAAAATCAAAGTTTATCCCTTAAATAAGGCAAGCATCGATTCT
* * *
353623 CGTAATAATCTCCATTCTTTCCAGG
452 CGTAATAGTCTCCATTCTTTTCAAG
** *
353648 ATTAGGAAAC-AAAA-ACA-------CATTAGCGTATATGACATTGATGCTTTGGCGACGCAAAA
1 ATTAGGAAACAAAAACACATTCCTTTCATTAGCGTACCTGACATTGATGCTTTGGTGACGCAAAA
* * * * * * *
353704 TAAGCTTTTCCTACCCCCGTTTTTGATAGAATTAATGTTTGCCTCTTAAATAAGACAAAC-ATGA
66 TACGCTTTTCCTACCACCATTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGAGAAACTA-GA
* * * * * * * *
353768 AAAGTCAAACTAATCCCTACTATTTTCAAGATTAGGGACCACAAACGTAGTCTTCTCATAAGAAT
130 ATAGTCATACTAATCCCTATTCTTTTCTAGATTAGGCACCATAAACGTAGTCTTCTCATAAGGAT
* * * * * * *
353833 ACACGATATTGATGCTTTGGTTTTGCAAGAAAAGCTTTCTTCACTCCAATTTTTGTATAGTATGA
195 ACACGATATTCATGCTTTGGTTTTGAAAGAAAGGCTTTCTTCCCCCCAATTTTTGTAAAGTCTGA
* *
353898 CTTC-TGCCTCAAGCGAGACAAACATTGATTCTAGTAATGGGCTTCATTCATTTTGTAATTAGGC
260 CTTCGTGCCTCAAACGAGACAAACATTGATTCTAGTAATGGCCTTCATTCATTTTGTAATTAGGC
* * *
353962 ACTATAAACACATTCTTCACATTCGGATAAAGCATAATGATGATTTTCTTTTGCATGGAAATCTT
325 ACTATAAACACATTCTTCACATTAGGATAAAGGATAATGATGATTTTCTTTTGCATGAAAATCTT
* * * *
354027 TTCTTTGCCTTATTTACCTTAAAATCAATGTTTATCCCTTAAATAGGGCAAGTATCGATTCTCAT
390 TTCTTTGCCTTATTTACCTTAAAATCAAAGTTTATCCCTTAAATAAGGCAAGCATCGATTCTCGT
*
354092 AATAGTCTCCATTCGTTTCAAG
455 AATAGTCTCCATTCTTTTCAAG
* * * * * *
354114 ATT-CGAAACCAAAAGCACATTCCCTTCATTAG-GATACGTGACATTGATGTTTTGGTGACGTAA
1 ATTAGGAAA-CAAAAACACATTCCTTTCATTAGCG-TACCTGACATTGATGCTTTGGTGACGCAA
* * * * * * * *
354177 AA-AGAGCTTTTCTTACCATCGTTTTTGATAGAATCAAAGTGTGTCTCCTAAATTAGAGAAAGTA
64 AATA-CGCTTTTCCTACCACCATTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGAGAAACTA
* * * *
354241 GAATAGTTAAACTAATCCCTATTCTTTTCTGGATTAGGC-GCATAAACGTAGTCTTCTCATAAGG
128 GAATAGTCATACTAATCCCTATTCTTTTCTAGATTAGGCACCATAAACGTAGTCTTCTCATAAGG
* * * * * *
354305 ATACATGATATTGATGTTTTGGTTTTGAAAGAAAGGCTTTGTTCCACCTAATTTTTGTAAAGTCT
193 ATACACGATATTCATGCTTTGGTTTTGAAAGAAAGGCTTTCTTCCCCCCAATTTTTGTAAAGTCT
* * * * * * * * *
354370 AACATCATGCCTCAAACGAGAGAAATATTGATTCCAGAAATGGTCTTCATTCATTTCGTAATTAG
258 GACTTCGTGCCTCAAACGAGACAAACATTGATTCTAGTAATGGCCTTCATTCATTTTGTAATTAG
354435 GCACTATAAACACATTCTTCACATTAGGATAAAGGATAATGATGATTTTCTTTTGCATGAAAATC
323 GCACTATAAACACATTCTTCACATTAGGATAAAGGATAATGATGATTTTCTTTTGCATGAAAATC
** * * * * *
354500 TTTGGTTTGCCTTA-TTACCTTAAAATCAAAATTCATCGCTTAAATAATGCAAGCATTGATTCTC
388 TTTTCTTTGCCTTATTTACCTTAAAATCAAAGTTTATCCCTTAAATAAGGCAAGCATCGATTCTC
*
354564 GTAATAGTCT-CATTCTTTTTAAG
453 GTAATAGTCTCCATTCTTTTCAAG
* * * * * * * * *
354587 ATTGGGAACCGAAAACACACTCCCTTCATTAAG-ATACATGGCATTGATGCTTTGGTGACGTAGA
1 ATTAGGAAACAAAAACACATTCCTTTCATT-AGCGTACCTGACATTGATGCTTTGGTGACGCA-A
* * * * * * *
354651 AA-ATGCTTTT-CTCAGCATCTTTTTTTATAGAATCAAAGTTTGTCTCCTCAATAAGAGAAACTA
64 AATACGCTTTTCCT-ACCACCATTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGAGAAACTA
* * * * * *
354714 AAATTGTCAAACTAATCCCTGTTCTTTTCAAGATTAGGCACCATAAACTTAGTCTTCTCATAAGG
128 GAATAGTCATACTAATCCCTATTCTTTTCTAGATTAGGCACCATAAACGTAGTCTTCTCATAAGG
* * * *
354779 ACACACGATATTGATGCTTTTGTTTTGAAAGAAAGGCTTTGTTCCCCCCAATTTTTGTAAAGTCT
193 ATACACGATATTCATGCTTTGGTTTTGAAAGAAAGGCTTTCTTCCCCCCAATTTTTGTAAAGTCT
* * *
354844 GACTTC-TACCTCAAACGAGACAAACATTGATTCTAGTAATGGCCTTCACTCATTTTGTAGTTAG
258 GACTTCGTGCCTCAAACGAGACAAACATTGATTCTAGTAATGGCCTTCATTCATTTTGTAATTAG
* * * *
354908 GCACTATAAACACATTCTCCACATTAGAATAAAGGATAATGATGATTTTCTTTTACGTGAAAATC
323 GCACTATAAACACATTCTTCACATTAGGATAAAGGATAATGATGATTTTCTTTTGCATGAAAATC
* * * * * *
354973 TTTTGTTTGCCTTATTTACCTTAAAATCAAAGTTCATTCCTTACATAAGGTAAGTATCGATTCTC
388 TTTTCTTTGCCTTATTTACCTTAAAATCAAAGTTTATCCCTTAAATAAGGCAAGCATCGATTCTC
* * * *
355038 ATAACAATCTCCATTCTTTTCTAG
453 GTAATAGTCTCCATTCTTTTCAAG
* *
355062 ATTAGGAAACAAAAACACATTCCTTTCATTAGCGTACCTGACATTGATGCTTTGCTGAGGCAAAA
1 ATTAGGAAACAAAAACACATTCCTTTCATTAGCGTACCTGACATTGATGCTTTGGTGACGCAAAA
* *
355127 TACGC-TTTCCTACCTACCATTTTTGATAGAATCAAAGTTTGTCTCTTAAAAAAGAGAAACAAGA
66 TACGCTTTTCCTACC-ACCATTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGAGAAACTAGA
** * *
355191 ATAGTCATACTAATCATTGTTCTTTTC-AGGATTAAGCACCATAAACGTAGTCTTCTCATAAGGA
130 ATAGTCATACTAATCCCTATTCTTTTCTA-GATTAGGCACCATAAACGTAGTCTTCTCATAAGGA
* * *
355255 TACACGATATTGATGCTTTGGTTTTGAAAGAAAGACTTTCTTCCCCTCAATTTTTGTAAAGTCTG
194 TACACGATATTCATGCTTTGGTTTTGAAAGAAAGGCTTTCTTCCCCCCAATTTTTGTAAAGTCTG
* * * * * * *
355320 A-TATCGTGCCTCAAACAAGACAAACACTGATTCTAGAAATGGCTTTCATTTATTTTATAATTAT
259 ACT-TCGTGCCTCAAACGAGACAAACATTGATTCTAGTAATGGCCTTCATTCATTTTGTAATTAG
* * * * * *
355384 GCACTATAAACACGTTCTTCTCATTAGGATGAAGGATAATGATGAGTTTCTTTTGTAT-AGAATC
323 GCACTATAAACACATTCTTCACATTAGGATAAAGGATAATGATGATTTTCTTTTGCATGAAAATC
* * ** * *
355448 TTTTCTTTGCCGTATTTACCTTAAAATCAAAATTTAT-CCTTGCACAAGGCAAACATCGATTCTC
388 TTTTCTTTGCCTTATTTACCTTAAAATCAAAGTTTATCCCTTAAATAAGGCAAGCATCGATTCTC
* * * *
355512 ATAACAGTCTCCAGTCTTTTCTAG
453 GTAATAGTCTCCATTCTTTTCAAG
* * * *
355536 ATTAGGAAACAAAAACACATTCCTTTTATTAGCGTACCTGACATTGATGCCTTGCTGATGCAAAA
1 ATTAGGAAACAAAAACACATTCCTTTCATTAGCGTACCTGACATTGATGCTTTGGTGACGCAAAA
* * * * * * *
355601 TACG-TTTTCTTACCACTAATTTTAATAAAATCAAAGTTTGCCTCTTAAATAAGAGAAACTATAA
66 TACGCTTTTCCTACCACCATTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGAGAAACTAGAA
*
355665 TAGTCATACTAATCCCTATTTTTTTCTAGATTAGGCACCATAAACGTAGTCTTCTCATAAGGATA
131 TAGTCATACTAATCCCTATTCTTTTCTAGATTAGGCACCATAAACGTAGTCTTCTCATAAGGATA
* * *
355730 CACGATATTCATGCATTGGTTTTGAAAGAAAGACTTTCTTCCCCTCAATTTTTGTAAAGTCTGAC
196 CACGATATTCATGCTTTGGTTTTGAAAGAAAGGCTTTCTTCCCCCCAATTTTTGTAAAGTCTGAC
* * * * * *
355795 ATCGTGCCTCAAACAAGACAAACACTGATTCTAGAAATGGCCTTCATTCATTTTATAATTATGCA
261 TTCGTGCCTCAAACGAGACAAACATTGATTCTAGTAATGGCCTTCATTCATTTTGTAATTAGGCA
* * *
355860 CTATAAACACATTTTTCACGTTAGGATAAAGGATAATGATGATTTTCTTTTGCATGGAAATCTTT
326 CTATAAACACATTCTTCACATTAGGATAAAGGATAATGATGATTTTCTTTTGCATGAAAATCTTT
* * * * *
355925 TCTTTGTCTTATTTACCTTAAAATCAAAGTTTATCCTTTAAATAAGGCAATG-ATCAAATCTCAT
391 TCTTTGCCTTATTTACCTTAAAATCAAAGTTTATCCCTTAAATAAGGCAA-GCATCGATTCTCGT
*
355989 AATAGTCTCCATTCCTTTCAAG
455 AATAGTCTCCATTCTTTTCAAG
* *
356011 ATTAGGAAACAAAAAACACATTCCTTTCATTAGCGTACCTGACATTGATG-TGCTGGTGATGCAA
1 ATTAGGAAAC-AAAAACACATTCCTTTCATTAGCGTACCTGACATTGATGCT-TTGGTGACGCAA
* * * * *
356075 AATACACTTTTGCTACCACTATTTTTAATAGAATCAAAGTTTGTCTCTTAAATAAGAGAAACTAT
64 AATACGCTTTTCCTACCACCATTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGAGAAACTAG
*
356140 AATAGTCATACTAATCCCTATTTTTTTTTCTAGATTAGGCACCATAAACGTAGTCTTCTCATAAG
129 AATAGTCATACTAATCCCTA--TTCTTTTCTAGATTAGGCACCATAAACGTAGTCTTCTCATAAG
* *
356205 GATACACGATATTCATGCTTTGGTTTTGAAAGAAAGGCTTTCTTCTCCCCAACTTTTGTAAAGTC
192 GATACACGATATTCATGCTTTGGTTTTGAAAGAAAGGCTTTCTTCCCCCCAATTTTTGTAAAGTC
* * *
356270 TGACTTCATGCCTCAAACGAGACAAACATTAATTCTAGTAATGGCTTTCATTCATTTTGTAATTA
257 TGACTTCGTGCCTCAAACGAGACAAACATTGATTCTAGTAATGGCCTTCATTCATTTTGTAATTA
* * * * *
356335 GGTACTATAAACACGTTCTT-ATCATTAGGATGAAGGATAATGATGAGTTTCTTTTGTAT-AGAA
322 GGCACTATAAACACATTCTTCA-CATTAGGATAAAGGATAATGATGATTTTCTTTTGCATGA-AA
* * ** *
356398 ATCTTTTCTTTGCCGTATTTACCTTAAAATCAAAATTTAT-CCTTGCACAAGGCAAGCATCGATT
385 ATCTTTTCTTTGCCTTATTTACCTTAAAATCAAAGTTTATCCCTTAAATAAGGCAAGCATCGATT
* * * *
356462 CTCATAACAGTCTCCAGTCTTTTCTAG
450 CTCGTAATAGTCTCCATTCTTTTCAAG
* * *
356489 ATTAGGAAACAAAAACACATTCCTTTCATTAGCGTACCTGACATTGATGCCTTGCTGATGCAAAA
1 ATTAGGAAACAAAAACACATTCCTTTCATTAGCGTACCTGACATTGATGCTTTGGTGACGCAAAA
* * * * *
356554 TACG-TTTTCTTACCACTATTTTTCATAAAATCAAAGTTTGTCTCTTAAAAAAGAGAAACTAGAA
66 TACGCTTTTCCTACCACCATTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGAGAAACTAGAA
* * * *
356618 CAGTCATACTAATCCTTGTTCTTTTC-AGGATTAGGCATCATAAACGTAGTCTTCTCATAAGGAT
131 TAGTCATACTAATCCCTATTCTTTTCTA-GATTAGGCACCATAAACGTAGTCTTCTCATAAGGAT
* * * *
356682 ACACGATAATGATGCTTTGGTTTTGAAAGAAAAGCTTTCTTCCCCCCAATTTTTGTAAAGTCTAA
195 ACACGATATTCATGCTTTGGTTTTGAAAGAAAGGCTTTCTTCCCCCCAATTTTTGTAAAGTCTGA
* * * * * * *
356747 CATCCTGCCTCAAACAACACAAACATTGATTCTAGAAATGGCCTCCATTCATTTTGTAATTACGC
260 CTTCGTGCCTCAAACGAGACAAACATTGATTCTAGTAATGGCCTTCATTCATTTTGTAATTAGGC
** * * * *
356812 AGAATAAACACATTTTTCACATTAGGATAAAGGATAACGATGATTTTTTTTTTTTTTGCATGGAA
325 ACTATAAACACATTCTTCACATTAGGATAAAGGATAATGATGA-----TTTTCTTTTGCATGAAA
* * *
356877 ATCTTTTCTTTGCCTTATTTACCTGAAAATCAAAGTTTATCCCTTAAATAAGGCAAGCATCAAAT
385 ATCTTTTCTTTGCCTTATTTACCTTAAAATCAAAGTTTATCCCTTAAATAAGGCAAGCATCGATT
* *
356942 GTCGTAATAGTCTCCGTTGC-TTTCAAG
450 CTCGTAATAGTCTCCATT-CTTTTCAAG
* * * *
356969 ATTAGGAAATAAAAAACACATTCCTTTCATTAGCGTACTTGACATTGATGCGTTGATGACGCAAA
1 ATTAGGAAA-CAAAAACACATTCCTTTCATTAGCGTACCTGACATTGATGCTTTGGTGACGCAAA
* * *
357034 ATACGCTTTTCCTACC-CCTATTTTTAATAGAATGAAAGTTTGTCTCTTAAATAAGAGAAACTAT
65 ATACGCTTTTCCTACCACC-ATTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGAGAAACTAG
* * *
357098 AATAGTCATACTAATCCCTGTTCTTTTCTAGATTAGGCACCATAAACATAGTCTTCTTATAAGGA
129 AATAGTCATACTAATCCCTATTCTTTTCTAGATTAGGCACCATAAACGTAGTCTTCTCATAAGGA
* *
357163 TACACGATATTCATGCTTTGGTTTTGAAAGAAAGGCTTTCTTCTCCCCAATTTTTGTAAAGTCTA
194 TACACGATATTCATGCTTTGGTTTTGAAAGAAAGGCTTTCTTCCCCCCAATTTTTGTAAAGTCTG
* * * *
357228 ACTTCATGCCTCAAACAAGACAAACATTAATTCTAGTAATGGCTTTCATTCATTTTGTAATTAGG
259 ACTTCGTGCCTCAAACGAGACAAACATTGATTCTAGTAATGGCCTTCATTCATTTTGTAATTAGG
* * * *
357293 CACTATAAACACGTTCTTCTCATTAGGATGAAGGATAATGATGATTTTCTTTTGTAT-AGAAATC
324 CACTATAAACACATTCTTCACATTAGGATAAAGGATAATGATGATTTTCTTTTGCATGA-AAATC
* * * * * *
357357 TTTTCTTTGCCGTATTTACATTAAAATTAAAGTTCATCCCTTAAAAAAGGCAAGCATCAATTCTC
388 TTTTCTTTGCCTTATTTACCTTAAAATCAAAGTTTATCCCTTAAATAAGGCAAGCATCGATTCTC
*
357422 TTAATAGTCTCCATTCTTTTCAAG
453 GTAATAGTCTCCATTCTTTTCAAG
* * *
357446 ATTGGGAAACAAAAACACATTCCTTTCATTACCGTACAC-GACATTGATGCATTGGTGACGCAAA
1 ATTAGGAAACAAAAACACATTCCTTTCATTAGCGTAC-CTGACATTGATGCTTTGGTGACGCAAA
* * * * * *
357510 ATATGTTTTTCATACCACCGTTTTTGATAGAATTAAAGTTTGTCTCTTAAATAAGATAAACTAGA
65 ATACGCTTTTCCTACCACCATTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGAGAAACTAGA
* ** *
357575 ATAGTCA-ACCTCATTCCC-ATTCTTTT-TAGGATTAGGTGCAATAAACGTAGTCTTCTCATAAG
130 ATAGTCATA-CT-AATCCCTATTCTTTTCTA-GATTAGGCACCATAAACGTAGTCTTCTCATAAG
* *
357637 GATACACGACATTCATGCTTTGGTTTTGAATGAAAGGCTTTCTTCCCCCCAATTTTTGTAAAGTC
192 GATACACGATATTCATGCTTTGGTTTTGAAAGAAAGGCTTTCTTCCCCCCAATTTTTGTAAAGTC
** * * * * * *
357702 TGAAATCGAGCCTCAAACCAGACAAACGTTGATTCCT-GTGATGGCCTTCACTCATTTTGTAAAT
257 TGACTTCGTGCCTCAAACGAGACAAACATTGATT-CTAGTAATGGCCTTCATTCATTTTGTAATT
* * * * *
357766 AGGCACTATAAACACATTCTTCACCTCAGAATTAAGGATAAAGATGATTTTTTTCTTTTGCATTG
321 AGGCACTATAAACACATTCTTCACATTAGGATAAAGGATAATGATGA---TTTTCTTTTGCA-TG
* * *
357831 -AAATCTTTTCATTGCCTTTTTTACCTTAAAATCAAAGTTTATCCCTTAAATAAGGCAAGCATCA
382 AAAATCTTTTCTTTGCCTTATTTACCTTAAAATCAAAGTTTATCCCTTAAATAAGGCAAGCATCG
* * *
357895 AATCTCGTAATAGTCTCCGTTCCTTTCAAG
447 ATTCTCGTAATAGTCTCCATTCTTTTCAAG
* *
357925 ATTAGGAAACAAAAACCACATTCCTTTCATTAGCGTACCTGACATTGATGCGTTGGCGACGCAAA
1 ATTAGGAAACAAAAA-CACATTCCTTTCATTAGCGTACCTGACATTGATGCTTTGGTGACGCAAA
* * * * *
357990 ATACGCTTTTCCTACCACTATTTTTAATAGAATCAAAGTTTGTCTCCTAAATAAAAGAAACTAAA
65 ATACGCTTTTCCTACCACCATTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGAGAAACTAGA
* * *
358055 ATTGTCAAACTAATCCCTATTCTTTTCAAGATTAGGCACCATAAACGTAGTCTTCTCATAAGGAT
130 ATAGTCATACTAATCCCTATTCTTTTCTAGATTAGGCACCATAAACGTAGTCTTCTCATAAGGAT
* * *
358120 ACACGATATTGATGCTTCGGATTTGAAAGAAAGGCTTTCTTCCCCCCAATTTTTGTAAAGTCTGA
195 ACACGATATTCATGCTTTGGTTTTGAAAGAAAGGCTTTCTTCCCCCCAATTTTTGTAAAGTCTGA
* * * * * * **
358185 CATCGTGCCTCAAACAAGACAAACACTGATTCTAGAAATGGCCTTCTTTCATTTTATAATTATTC
260 CTTCGTGCCTCAAACGAGACAAACATTGATTCTAGTAATGGCCTTCATTCATTTTGTAATTAGGC
* * *
358250 ACTATAAACACATTTTTCACATTAGGATAAAGGATAATAATGA-TTTCTTTTGCATGGAAATCTT
325 ACTATAAACACATTCTTCACATTAGGATAAAGGATAATGATGATTTTCTTTTGCATGAAAATCTT
** * * *
358314 TTCTTTGCCTTATTTACCTTAAAATCAAAGTTTATCGTTTAAATAAGGCATGCATCAAATCTCGT
390 TTCTTTGCCTTATTTACCTTAAAATCAAAGTTTATCCCTTAAATAAGGCAAGCATCGATTCTCGT
* *
358379 AATAGTCTTCATTCCTTTCAAG
455 AATAGTCTCCATTCTTTTCAAG
* * * * * * *
358401 AATAAGATACAAAAAACACATTCCTTTCACTAGCGTACCTGACATTGATGCGTTAGCGACGCAAA
1 ATTAGGAAAC-AAAAACACATTCCTTTCATTAGCGTACCTGACATTGATGCTTTGGTGACGC-AA
* * * *
358466 AATACGCTTTTCCTACCACTATTTTTAATAGAATCAATGTTTGTCTCTTAAATAAGAGAAACTAT
64 AATACGCTTTTCCTACCACCATTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGAGAAACTAG
* *
358531 AGTAGTCATACTAATCCCTGTTCTTTTCTAGATTAGGCACCATAAACGTAGTCTTC
129 AATAGTCATACTAATCCCTATTCTTTTCTAGATTAGGCACCATAAACGTAGTCTTC
358587 AGGATTAGGA
Statistics
Matches: 9259, Mismatches: 1182, Indels: 362
0.86 0.11 0.03
Matches are distributed among these distances:
452 1 0.00
453 295 0.03
454 38 0.00
455 24 0.00
458 28 0.00
459 9 0.00
460 2 0.00
462 3 0.00
463 1 0.00
465 5 0.00
466 202 0.02
467 197 0.02
468 7 0.00
469 2 0.00
470 37 0.00
471 1 0.00
472 2 0.00
473 588 0.06
474 1127 0.12
475 1997 0.22
476 2785 0.30
477 779 0.08
478 54 0.01
479 413 0.04
480 340 0.04
481 59 0.01
482 262 0.03
483 1 0.00
ACGTcount: A:0.32, C:0.19, G:0.14, T:0.35
Consensus pattern (476 bp):
ATTAGGAAACAAAAACACATTCCTTTCATTAGCGTACCTGACATTGATGCTTTGGTGACGCAAAA
TACGCTTTTCCTACCACCATTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGAGAAACTAGAA
TAGTCATACTAATCCCTATTCTTTTCTAGATTAGGCACCATAAACGTAGTCTTCTCATAAGGATA
CACGATATTCATGCTTTGGTTTTGAAAGAAAGGCTTTCTTCCCCCCAATTTTTGTAAAGTCTGAC
TTCGTGCCTCAAACGAGACAAACATTGATTCTAGTAATGGCCTTCATTCATTTTGTAATTAGGCA
CTATAAACACATTCTTCACATTAGGATAAAGGATAATGATGATTTTCTTTTGCATGAAAATCTTT
TCTTTGCCTTATTTACCTTAAAATCAAAGTTTATCCCTTAAATAAGGCAAGCATCGATTCTCGTA
ATAGTCTCCATTCTTTTCAAG
Found at i:358734 original size:187 final size:188
Alignment explanation
Indices: 358412--358773 Score: 494
Period size: 187 Copynumber: 1.9 Consensus size: 188
358402 ATAAGATACA
* * * *
358412 AAAAACACATTCCTTTCACTAGCGTACCTGACATTGATGCGTTAGCGACGCAAAAATACGCTTTT
1 AAAAACACATTCCTTTCACTAGCGCACATGACATTGATGAGTTAGCGACGCAAAAATAAGCTTTT
* * * * * ** *
358477 CCTACCACTATTTTTAATAGAATCAATGTTTGTCTCTTAAATAAGAGAAACTATAGTAGTCATAC
66 CCTACCACCATTTTTAATAGAATCAAAGTTTGCCTCCTAAATAAGACAAACTATAAAAGTCAAAC
* * *
358542 TAATCCCTGTTCTTTTCTAGATTAGGCACCATAAACGTAGTCTTCAGGATTAGGAAAC
131 TAATCCCTATTCTTTTCAAGATTAGGCACCACAAACGTAGTCTTCAGGATTAGGAAAC
* * * * *
358600 AAAAACACATTCCTTTCATTAGCGCATATGACATTGATGATTTGGTGACGC-AAAATAAGCTTTT
1 AAAAACACATTCCTTTCACTAGCGCACATGACATTGATGAGTTAGCGACGCAAAAATAAGCTTTT
* * *
358664 CCTACCACCGTTTTTGATAGAATTAAAGTTTGCCTCCTAAATAAGACAAAC-ATGAAAAGTCAAA
66 CCTACCACCATTTTTAATAGAATCAAAGTTTGCCTCCTAAATAAGACAAACTAT-AAAAGTCAAA
358728 CTAATCCCTATTCTTTTCAAGATTAGGCACCACAAACGTAGTCTTC
130 CTAATCCCTATTCTTTTCAAGATTAGGCACCACAAACGTAGTCTTC
358774 TCATACGGAT
Statistics
Matches: 150, Mismatches: 23, Indels: 3
0.85 0.13 0.02
Matches are distributed among these distances:
186 2 0.01
187 105 0.70
188 43 0.29
ACGTcount: A:0.34, C:0.21, G:0.14, T:0.31
Consensus pattern (188 bp):
AAAAACACATTCCTTTCACTAGCGCACATGACATTGATGAGTTAGCGACGCAAAAATAAGCTTTT
CCTACCACCATTTTTAATAGAATCAAAGTTTGCCTCCTAAATAAGACAAACTATAAAAGTCAAAC
TAATCCCTATTCTTTTCAAGATTAGGCACCACAAACGTAGTCTTCAGGATTAGGAAAC
Found at i:359899 original size:476 final size:477
Alignment explanation
Indices: 358584--378918 Score: 23027
Period size: 475 Copynumber: 42.8 Consensus size: 477
358574 AAACGTAGTC
* * * *
358584 TTCAGGATTAGGAAA-CAAAAACACATTCCTTTCATTAGCGCATATGACATTGATGATTTGGTGA
1 TTCAAGATTAGGAAACCAAAAACACATTCCTTTCATTAGCGTACATGACATTGATGCTTTGGTGA
* * * *
358648 CGCAAAATAAGCTTTTCCTACCACCGTTTTTGATAGAATTAAAGTTTGCCTCCTAAATAAGACAA
66 CGCAAAATAAGCTTTTCCTACCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGAGAA
* * * *
358713 AC-ATGAAAAGTCAAACTAATCCCTATTCTTTTCAAGATTAGGCACCACAAACGTAGTCTTCTCA
131 ACTA-GAATAGTCATACTAATCCCTATTCTTTTCTAGATTAGGCACCATAAACGTAGTCTTCTCA
* * * *
358777 TACGGATACACGATATTGATGCTTTGGTTTTGCAAGAAAAGCTTTCTTCACGCC-AATTTTTGTA
195 TAAGGATACACGATATTGATGCTTTGGTTTTGAAAGAAAGGCTTTCTTCTC-CCTAATTTTTGTA
* * * *
358841 AAGTATGACTTC-TGCCTTAAGCGAGACAAACATTGATTCTAGTAATGAG-CTTTATTCATTTTG
259 AAGTCTGACTTCGTGCCTCAAACGAGACAAACATTGATTCTAGTAATG-GCCTTCATTCATTTTG
* *
358904 TAATTAGGCACTATAAACACATTCTTCACATTCGGATAAAGCATAATGATGATTTTCTTTTGCAT
323 TAATTAGGCACTATAAACACATTCTTCACATTAGGATAAAGGATAATGATGATTTTCTTTTGCAT
* * * * * *
358969 GGAAATCTTTTCTTTACCTTATTTACCTTAACATGAAAATTTATCCGTTAAATAAGGCAAGTATC
388 GGAAATCTTTTCTTTGCCTTATTTACCTTAAAATCAAAGTTTATCCCTTAAATAAGGCAAGCATC
**
359034 GATTCTCACAATAGTCTCCATTCTT
453 GATTCTCGTAATAGTCTCCATTCTT
* * * *
359059 TTCAAGATT-CGAAACCAAAAGCACATTCCCTTCATTAG-GATACATGACATTGATGTTTTGGTG
1 TTCAAGATTAGGAAACCAAAAACACATTCCTTTCATTAGCG-TACATGACATTGATGCTTTGGTG
** * * * * *
359122 ACATAAAA-AGAGCCTTTCTTACCATCGTTTTTGATAGAATCAAGGTTTGTCTCTTAAATATGAG
65 ACGCAAAATA-AGCTTTTCCTACCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGAG
* * * ***
359186 AAACTAGAATAGCCATACTAGTCCCTATTCTTTTCTGGATTAGGCACCATAGTGGTAGTCTTCTC
129 AAACTAGAATAGTCATACTAATCCCTATTCTTTTCTAGATTAGGCACCATAAACGTAGTCTTCTC
* * * * *
359251 ATAAAGATGCACGATATTCATGCTCTGG-TTTGAAAGAAAGGCTTTCTTCCTACC-AATTTTTGT
194 ATAAGGATACACGATATTGATGCTTTGGTTTTGAAAGAAAGGCTTTCTT-CTCCCTAATTTTTGT
* * * *
359314 AAAGTCTGACTTCGTGCCTTAAATGAGACAAACGTTGATTCTAGTAATGGCCTTCATTCATTTCG
258 AAAGTCTGACTTCGTGCCTCAAACGAGACAAACATTGATTCTAGTAATGGCCTTCATTCATTTTG
359379 TAATTAGGCACTATAAACACATTCTTCACATTAGGATAAAGGATAATGATGATTTTCTTTTGCAT
323 TAATTAGGCACTATAAACACATTCTTCACATTAGGATAAAGGATAATGATGATTTTCTTTTGCAT
* * * * **
359444 GGAAGTGTTTTCTTTGCCTTATTTACCTTAAAATCAAATTTTATCCTTTAAATAAGTTAAGCATC
388 GGAAATCTTTTCTTTGCCTTATTTACCTTAAAATCAAAGTTTATCCCTTAAATAAGGCAAGCATC
* * * * *
359509 AAATCTAGTAATAGTCTCCGTTCCT
453 GATTCTCGTAATAGTCTCCATTCTT
* * ** * * *
359534 TTCAAGATTAGGAAACAAAAAACACATTCCCTTCAACAGCGTACCTGACATTGATGCATTGGCGA
1 TTCAAGATTAGGAAACCAAAAACACATTCCTTTCATTAGCGTACATGACATTGATGCTTTGGTGA
* * * ** * *
359599 TGCAAAATACGCTTTTCCCACCACTATTTTTAATAGAATTAAAGTTTGTCTCTTAAATAAGAGAA
66 CGCAAAATAAGCTTTTCCTACCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGAGAA
* *
359664 ACTATAATAGTCATACTAAT-CCTGATT-TTTTCTAGATTAGACACCATAAACGTAGTCTTCTCA
131 ACTAGAATAGTCATACTAATCCCT-ATTCTTTTCTAGATTAGGCACCATAAACGTAGTCTTCTCA
* * *
359727 TAAGGATACATGATATTCATGCTTTGGTTTTGAAAGAAAGGCTTTCTTCTCCCTAATTTTTCTAA
195 TAAGGATACACGATATTGATGCTTTGGTTTTGAAAGAAAGGCTTTCTTCTCCCTAATTTTTGTAA
* * * ** * *
359792 AGTCTGCCTTCATGCCTCAAACAAGACAAACATCAATTCTAGTAATGGCTTTTATTCATTTTGTA
260 AGTCTGACTTCGTGCCTCAAACGAGACAAACATTGATTCTAGTAATGGCCTTCATTCATTTTGTA
* * * * * * *
359857 ATTAGGCACTATAAACACGTTCTTCTCATTAAGTTGAAGGATAATGATGATTTTCTTTTGTATAG
325 ATTAGGCACTATAAACACATTCTTCACATTAGGATAAAGGATAATGATGATTTTCTTTTGCATGG
* * * * *
359922 AAATATTTTCTTTGCCGTATTTACCTTAAAATCAAAATTTAT-CCTTACATAAGGCAGGCATCGA
390 AAATCTTTTCTTTGCCTTATTTACCTTAAAATCAAAGTTTATCCCTTAAATAAGGCAAGCATCGA
* *
359986 TTCTCATAACAGTCTCCATTCTT
455 TTCTCGTAATAGTCTCCATTCTT
* * ** * *
360009 TTCTAGATTAGGAAA-CAAAAACACATTCCTTTCATTAGCATACCCGACATTGATGCCTTGTTGA
1 TTCAAGATTAGGAAACCAAAAACACATTCCTTTCATTAGCGTACATGACATTGATGCTTTGGTGA
* * * * * *
360073 TGTAAAATACGC-TTTCCTACCACCATTTTTGATAGAATCAAAGTTTGTCTCTTAAAAAAGTGAA
66 CGCAAAATAAGCTTTTCCTACCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGAGAA
* * * * *
360137 ACCAGAATAGTCGTACTAATCCTTGTTCTTTTC-AGGATTATGCACCATAAACGTAGTCTTCTCA
131 ACTAGAATAGTCATACTAATCCCTATTCTTTTCTA-GATTAGGCACCATAAACGTAGTCTTCTCA
* *
360201 TAAGGATACACGATATTGATGCCTTGGTTTTGAAAGAAAGGCTTTCTTCCCCCTAATTTTTGTAA
195 TAAGGATACACGATATTGATGCTTTGGTTTTGAAAGAAAGGCTTTCTTCTCCCTAATTTTTGTAA
* * ** * * * *
360266 AGTCCGACATCGTGCCTCAAATAAGATAAACATTGATTCAAGAAATGGCTTTCATTCATTTTGTA
260 AGTCTGACTTCGTGCCTCAAACGAGACAAACATTGATTCTAGTAATGGCCTTCATTCATTTTGTA
* * * * * * *
360331 ATTACGCACAATAAACACTTTTTTCACATTAGGATAAAGGATAACGATGATTTTCTTTTGGATAG
325 ATTAGGCACTATAAACACATTCTTCACATTAGGATAAAGGATAATGATGATTTTCTTTTGCATGG
* * *
360396 AAATCTTTTCTTTGCCTTATTTACCTTAAAATCAAAGTTTATCCCATAAATAAGGAAAGCATCAA
390 AAATCTTTTCTTTGCCTTATTTACCTTAAAATCAAAGTTTATCCCTTAAATAAGGCAAGCATCGA
* * *
360461 ATGTCGTAATAGTCTCCGTTGC-T
455 TTCTCGTAATAGTCTCCATT-CTT
* * * *
360484 TTCAAGATTAGGAAACAAAAAACACATTCCTTTCATTAGGGTACTTGACATTGATGCGTTGGTGA
1 TTCAAGATTAGGAAACCAAAAACACATTCCTTTCATTAGCGTACATGACATTGATGCTTTGGTGA
* * * ** * * *
360549 TGCAAACTACGCTTTTCCTACC-CTTTTTTTAATAAAATCAAAGTTTATCTCTTAAATAAGAGAA
66 CGCAAAATAAGCTTTTCCTACCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGAGAA
* * *
360613 ACTATAACAGTCATACTAATCCCTATGCTTTTCTAGATTAGGCACCATAAACGTAGTCTTCTCAT
131 ACTAGAATAGTCATACTAATCCCTATTCTTTTCTAGATTAGGCACCATAAACGTAGTCTTCTCAT
* * *
360678 AAAGATACACGATATTTATGCTTTGGTTTTGAAAGAAAGGCTTTCTTCTCCCCAATTTTTGTAAA
196 AAGGATACACGATATTGATGCTTTGGTTTTGAAAGAAAGGCTTTCTTCTCCCTAATTTTTGTAAA
* * * **
360743 GTCTGACTTCATGCCTCAAACAAGACAAACATTAATTCTAGTAATGGTTTTCATTCATTTTGTAA
261 GTCTGACTTCGTGCCTCAAACGAGACAAACATTGATTCTAGTAATGGCCTTCATTCATTTTGTAA
* * * * * *
360808 TTAGGCACTATAAACACGTTCTTCTCATTTGGATGAAGGATAATGATGATTTTCTTTTGTATAGA
326 TTAGGCACTATAAACACATTCTTCACATTAGGATAAAGGATAATGATGATTTTCTTTTGCATGGA
* * * * * *
360873 AATCTTTTCTTTGCCGTATTTTCATTAAAATTAAAGTTCATCCCTTAAA-AAGGCAAGCATCAAT
391 AATCTTTTCTTTGCCTTATTTACCTTAAAATCAAAGTTTATCCCTTAAATAAGGCAAGCATCGAT
*
360937 TCTCTTAATAGTCTCCATTCTT
456 TCTCGTAATAGTCTCCATTCTT
* * * * *
360959 TTCAAGATTGGGAAA-CAAAAACACATTCCTTTCATTACCGTACACGACATTCATGCATTGGTGA
1 TTCAAGATTAGGAAACCAAAAACACATTCCTTTCATTAGCGTACATGACATTGATGCTTTGGTGA
* * * *
361023 CGCAAAATATGTTTTTCCTACCACCGTTTTTGATAGAATTAAAGTTTGTCTCTTAAATAAGATAA
66 CGCAAAATAAGCTTTTCCTACCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGAGAA
* * ** *
361088 GCTAGAATAGTCA-ACCTCATTCCC-ATTCTTTT-TAGGATTAGGTGCAATAAACGTAGTCTTCT
131 ACTAGAATAGTCATA-CT-AATCCCTATTCTTTTCTA-GATTAGGCACCATAAACGTAGTCTTCT
* * * *
361150 CATAAGGATACACGATATTCATGCTTTGGGTTTGAAAGAAAGGCTTTCTTCCCCCCAATTTTTGT
193 CATAAGGATACACGATATTGATGCTTTGGTTTTGAAAGAAAGGCTTTCTTCTCCCTAATTTTTGT
* * * * ** *
361215 AAAGTTTGA-ATCGAGCCTCAAACCAGACAAACATTGATTCCT-GTGGTGGCCTTCACTCATTTT
258 AAAGTCTGACTTCGTGCCTCAAACGAGACAAACATTGATT-CTAGTAATGGCCTTCATTCATTTT
* * * * * * *
361278 GTAAGGTAGGCACTGTAAACACATTCCTCAC-TTCAGAATTAAGGATAAAGATGATTTTTTTTTT
322 GTAA-TTAGGCACTATAAACACATTCTTCACATT-AGGATAAAGGATAATGATGA--TTTTCTTT
*
361342 TGCATGGAAATCTTTTCTTTGCCTTATTTACCTTAAAATCAAAATTTAT-CCTTAAAATAAGGCA
383 TGCATGGAAATCTTTTCTTTGCCTTATTTACCTTAAAATCAAAGTTTATCCCTT-AAATAAGGCA
* *
361406 AGCATCGATTCTCATAACAGTCTCCATTCTT
447 AGCATCGATTCTCGTAATAGTCTCCATTCTT
* ** * *
361437 TTCTAGATTAGGAAA-CAAAAACACATTCCTTTCATTAGCGTACCCGACATTGATGCCTTGCTGA
1 TTCAAGATTAGGAAACCAAAAACACATTCCTTTCATTAGCGTACATGACATTGATGCTTTGGTGA
* * * * * *
361501 TGTAAAATACGC-TTTCCTACCACCATTTTTGATAGAATAAAAGTTTGTCTCTTAAAAAAGAGAA
66 CGCAAAATAAGCTTTTCCTACCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGAGAA
* * * * * *
361565 ACTAGAATAGTCGTACAAATCCCTATTCTTTTCTGGATTAGGCACCATAATCTTAGTCTTCTCGT
131 ACTAGAATAGTCATACTAATCCCTATTCTTTTCTAGATTAGGCACCATAAACGTAGTCTTCTCAT
* *
361630 AAGGATACACGATATTGATGCTTTGGTTTTGAGAGACAA-GCTTTCTT-TCCCTCGATTTTTGTA
196 AAGGATACACGATATTGATGCTTTGGTTTTGAAAGA-AAGGCTTTCTTCTCCCT-AATTTTTGTA
* * * *
361693 AAGTTTGACTTTGTGCCTCAAGCGAGACAAACAGTGATTCTAGTAATGGCCTTCATTCATTTTGT
259 AAGTCTGACTTCGTGCCTCAAACGAGACAAACATTGATTCTAGTAATGGCCTTCATTCATTTTGT
* * *
361758 AATTAGGCACTGTAAACACATTCTTCATATTAGGATAAAGGATAATGATGATTTTCTTTTGCATA
324 AATTAGGCACTATAAACACATTCTTCACATTAGGATAAAGGATAATGATGATTTTCTTTTGCATG
* * **
361823 GAAATCTTTTCTTTGTCTTATTTGCCTTAAAATCAAAGTTTATCCCCGAAATAAGGCAAGCATCG
389 GAAATCTTTTCTTTGCCTTATTTACCTTAAAATCAAAGTTTATCCCTTAAATAAGGCAAGCATCG
*
361888 ATTCTCATAATAGTCTCCATTCTT
454 ATTCTCGTAATAGTCTCCATTCTT
* * * * * * *
361912 TGCAAGAATCGG-AACCAAAAACACACTCCCTTCATTATG-ATACGTGACATTGATGCTTTGGTG
1 TTCAAGATTAGGAAACCAAAAACACATTCCTTTCATTA-GCGTACATGACATTGATGCTTTGGTG
* * * * **
361975 ACGCAAAATGAGCTTTTCTTACCACCGTTTTTGATAGAATCAAAATTTATCTCTTAAATTGGAGA
65 ACGCAAAATAAGCTTTTCCTACCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGAGA
* * *
362040 AACTAGAATAGTCAAACTAATCCCTATTCTTTT-TAGGATTAAGCACAATAAACGTAGTCTTCTC
130 AACTAGAATAGTCATACTAATCCCTATTCTTTTCTA-GATTAGGCACCATAAACGTAGTCTTCTC
362104 ATAAGGATACACGATATTGATGCTTTGGTTTTGAAAGAAAGGCTTTC-T-TCCCTCAATTTTTGT
194 ATAAGGATACACGATATTGATGCTTTGGTTTTGAAAGAAAGGCTTTCTTCTCCCT-AATTTTTGT
* *
362167 AAAGTCTGACATCGTGCCTCAAACGAGACAAACATTGATTCCAG-ATATGGCCTTCATTCATTTT
258 AAAGTCTGACTTCGTGCCTCAAACGAGACAAACATTGATTCTAGTA-ATGGCCTTCATTCATTTT
* *
362231 GTAATTAGGCACTACAAACACATTCTTCACTTTAGGATAAAGGATAATGATGATTTTCTTTTGCA
322 GTAATTAGGCACTATAAACACATTCTTCACATTAGGATAAAGGATAATGATGATTTTCTTTTGCA
** ** * * *
362296 TTAAAATCTTTGGTTTGCCTTATTTACCTTAAAATCAAAGTTCATCCCTTAATTAAGGCAAGCGT
387 TGGAAATCTTTTCTTTGCCTTATTTACCTTAAAATCAAAGTTTATCCCTTAAATAAGGCAAGCAT
* *
362361 CGATTCTCGTAAGAATCTCCATTCTT
452 CGATTCTCGTAATAGTCTCCATTCTT
* * * *
362387 TTCAGGATTAGGAAA-CAAAAACACATTCCTTTCATTAGCATATATGACATTAATGCTTTGGTGA
1 TTCAAGATTAGGAAACCAAAAACACATTCCTTTCATTAGCGTACATGACATTGATGCTTTGGTGA
* * * *
362451 CGCAAAATAAGCTTTTCCTACCACCGTTTTTGATAGAATTAAAGTTTGCCTCCTAAATAAGACAA
66 CGCAAAATAAGCTTTTCCTACCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGAGAA
* *
362516 AC-ATGAAAAGTCAAACTAATCCCTATTCTTTT-TAAGATTAGGCACCATAAACGTAGTCTTCTC
131 ACTA-GAATAGTCATACTAATCCCTATTCTTTTCT-AGATTAGGCACCATAAACGTAGTCTTCTC
* * *
362579 ATAAGGATACACGATATTGATGCTTTGGTTTTGCAAGAAAAGCTTTCTTCACACC-AATTTTTGT
194 ATAAGGATACACGATATTGATGCTTTGGTTTTGAAAGAAAGGCTTTCTTCTC-CCTAATTTTTGT
* * *
362643 AAAGTATGACTTC-TGCCTCAAGCGAGACAAACATTGATTCTAGTAATAGG-CTTCATTCAGTTT
258 AAAGTCTGACTTCGTGCCTCAAACGAGACAAACATTGATTCTAGTAAT-GGCCTTCATTCATTTT
* * *
362706 GTAATTAGGCACTATAAACACATTCTTCAAATTTGGATAAAGGTTAATGATGATTTTCTTTTGCA
322 GTAATTAGGCACTATAAACACATTCTTCACATTAGGATAAAGGATAATGATGATTTTCTTTTGCA
* * *
362771 TGGAAATC--TT-TTTGCCTTATTTACCTTAAAATGAAAATTTATCCCTTAAATAAGGCTAGCAT
387 TGGAAATCTTTTCTTTGCCTTATTTACCTTAAAATCAAAGTTTATCCCTTAAATAAGGCAAGCAT
* * * *
362833 CAAATCTCGTAATAGTCTCCGTTCCT
452 CGATTCTCGTAATAGTCTCCATTCTT
* * * * * *
362859 TTCAAGATTAGGAAACAAAAAACACATTCCCTTCAATAGCGTACCTGACACTTGATGCATTGGCG
1 TTCAAGATTAGGAAACCAAAAACACATTCCTTTCATTAGCGTACATGACA-TTGATGCTTTGGTG
* * * ** *
362924 ATGCAAAATACGCTTTTCCCACCACTATTTTTAATAGAATCAAAGTTTGTCTCTTAAATAAGAGA
65 ACGCAAAATAAGCTTTTCCTACCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGAGA
* * *
362989 AACTATAATAGTCATACTAATCCCTCTT-TTTTCTAGATTACGCACCATAAACGTAGTCTTCTCA
130 AACTAGAATAGTCATACTAATCCCTATTCTTTTCTAGATTAGGCACCATAAACGTAGTCTTCTCA
* * *
363053 TAAGGATACATGATATTCATGCTTTGGTTTTGAAAGAAAGGCTTTCTTCTCCCCAA-TTTTGTAA
195 TAAGGATACACGATATTGATGCTTTGGTTTTGAAAGAAAGGCTTTCTTCTCCCTAATTTTTGTAA
* * * * * *
363117 AGTCTGCCTTCATGCCTCAAACAAGACAAACATTAATTCTAGTAATGGCTTTTATTCATTTTGTA
260 AGTCTGACTTCGTGCCTCAAACGAGACAAACATTGATTCTAGTAATGGCCTTCATTCATTTTGTA
* * * * * * *
363182 ATTAGGCACTATAAACACGTTCTTCTCATTAAGTTGAAGGATAATGATGATTTTCTTTTGTATAG
325 ATTAGGCACTATAAACACATTCTTCACATTAGGATAAAGGATAATGATGATTTTCTTTTGCATGG
* * * * *
363247 AAATATTTTCTTTGCCGTATTTACCTTAAAATCAAAATTTAT-CCTTACATAAGGCAGGCATCGA
390 AAATCTTTTCTTTGCCTTATTTACCTTAAAATCAAAGTTTATCCCTTAAATAAGGCAAGCATCGA
* *
363311 TTCTCATAACAGTCTCCATTCTT
455 TTCTCGTAATAGTCTCCATTCTT
* ** * *
363334 TTCTAGATTAGGAAACC-AAAACACATTCCTTTCATTAGCGTACCCGACATTGATGCCTTGTTGA
1 TTCAAGATTAGGAAACCAAAAACACATTCCTTTCATTAGCGTACATGACATTGATGCTTTGGTGA
* * * * * *
363398 TGTAAAATACGC-TTTCCTACCACCCTTTTTGATAGAATCAAAGTTTGTCTCTTAAAAAAGTGAA
66 CGCAAAATAAGCTTTTCCTACCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGAGAA
* * * * *
363462 ACCAGAATAGTCGTACTAATCCTTGTTCTTTTC-AGGATTATGCACCATAAACGTAGTCTTCTCA
131 ACTAGAATAGTCATACTAATCCCTATTCTTTTCTA-GATTAGGCACCATAAACGTAGTCTTCTCA
* *
363526 TAAGGATACACGATATTGATGCCTTGGTTTTGAAAGAAAGGCTTTCTTCCCCCTAATTTTTGTAA
195 TAAGGATACACGATATTGATGCTTTGGTTTTGAAAGAAAGGCTTTCTTCTCCCTAATTTTTGTAA
* * ** * * *
363591 AGTCCGACATCGTGCCTCAAATAAGACAAACATTGATTCAAGAAATGGCTTTCATTCATTTTGTA
260 AGTCTGACTTCGTGCCTCAAACGAGACAAACATTGATTCTAGTAATGGCCTTCATTCATTTTGTA
* * * * * * *
363656 ATTACGCACAATAAACACTTTTTTCACATTAGGATAAAGGATAACGATGATTTTCTTTTGGATAG
325 ATTAGGCACTATAAACACATTCTTCACATTAGGATAAAGGATAATGATGATTTTCTTTTGCATGG
* *
363721 AAATCTTTTCTTTGCCTTATTTACCTTAAAATCAAAGTTTATCCCTTAAATAAGGAAAGCATCAA
390 AAATCTTTTCTTTGCCTTATTTACCTTAAAATCAAAGTTTATCCCTTAAATAAGGCAAGCATCGA
* * **
363786 ATGTCGTAATAGTCTCTGTTGC-T
455 TTCTCGTAATAGTCTCCATT-CTT
* * * *
363809 TTCAAGATTAGGAAACAAAAAACACATTCCTTTCATTAGGGTACTTGACATTGATGCGTTGGTGA
1 TTCAAGATTAGGAAACCAAAAACACATTCCTTTCATTAGCGTACATGACATTGATGCTTTGGTGA
* * * ** * *
363874 TGCAAACTACGCTTTTCCTACC-CTTTTTTTAATAGAATCAAAGTTTATCTCTTAAATAAGAGAA
66 CGCAAAATAAGCTTTTCCTACCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGAGAA
* * *
363938 ACTATAACAGTCATACTAATCCCTATGCTTTTCTAGATTAGGCACCATAAACGTAGTCTTCTCAT
131 ACTAGAATAGTCATACTAATCCCTATTCTTTTCTAGATTAGGCACCATAAACGTAGTCTTCTCAT
* *
364003 AAAGATACACGATATTCATGCTTTGGTTTTGAAAGAAAGGCTTTCTTCTCCCTAATTTTTGTAAA
196 AAGGATACACGATATTGATGCTTTGGTTTTGAAAGAAAGGCTTTCTTCTCCCTAATTTTTGTAAA
* * * **
364068 GTCTGACTTCATGCCTCAAACAAGACAAACATTAATTCTAGTAATGGTTTTCATTCATTTTGTAA
261 GTCTGACTTCGTGCCTCAAACGAGACAAACATTGATTCTAGTAATGGCCTTCATTCATTTTGTAA
* * * * * *
364133 TTAGGCACTATAAACACGTTCTTCTCATTTGGATGAAGGATAATGATGATTTTCTTTTGTATAGA
326 TTAGGCACTATAAACACATTCTTCACATTAGGATAAAGGATAATGATGATTTTCTTTTGCATGGA
* * * * * * * *
364198 AATCTTTTCTTTGTCGTATTTTCATTAAAATTAAAGTTCATCCCTTAAA-AAGGCCAGCATCAAT
391 AATCTTTTCTTTGCCTTATTTACCTTAAAATCAAAGTTTATCCCTTAAATAAGGCAAGCATCGAT
*
364262 TCTCTTAATAGTCTCCATTCTT
456 TCTCGTAATAGTCTCCATTCTT
* * * * * *
364284 TTCAAGATTTGGAAA-CAAAAACACGTTCCTTTTATTACCGTACACGACATTGATGCATTGGTGA
1 TTCAAGATTAGGAAACCAAAAACACATTCCTTTCATTAGCGTACATGACATTGATGCTTTGGTGA
* * * * * *
364348 CGCAAAATATGTTTTTCCCACCTCCGTTTTTGATAGAATTAAAGTTTGTCTCTTAAATAAGATAA
66 CGCAAAATAAGCTTTTCCTACCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGAGAA
* ** *
364413 ACTAGAATAGTCA-ACCTCATTCCC-ATTCTTTT-TAGGATTAGGTGCAATAAACGTAGTCTTCT
131 ACTAGAATAGTCATA-CT-AATCCCTATTCTTTTCTA-GATTAGGCACCATAAACGTAGTCTTCT
* * * *
364475 CATAAGGATACACGATATTCATGCTTTGGGTTTGAAAGAAAGGCTTTCTTCCCCCCAATTTTTGT
193 CATAAGGATACACGATATTGATGCTTTGGTTTTGAAAGAAAGGCTTTCTTCTCCCTAATTTTTGT
* ** * * ** *
364540 AAAGTTTGAAATCGAGCCTCAAACCAGACAAACATTGATTCCT-GTGGTGGCCTTCACTCATTTT
258 AAAGTCTGACTTCGTGCCTCAAACGAGACAAACATTGATT-CTAGTAATGGCCTTCATTCATTTT
* * * * ** * *
364604 GTAAGTAGGCACTGTAAACACATTCCTCAC-TTCAGAATTGAGGATAAAGATGATTTTTTTTTTT
322 GTAATTAGGCACTATAAACACATTCTTCACATT-AGGATAAAGGATAATGATGA---TTTTCTTT
* *
364668 TTCATGGAAATCTTTTCTTTGCCTTATTTACCTTAAAATCAAAATTTAT-CCTTAAAATAAGGCA
383 TGCATGGAAATCTTTTCTTTGCCTTATTTACCTTAAAATCAAAGTTTATCCCTT-AAATAAGGCA
* *
364732 AGCATCGATTCTCATAACAGTCTCCATTCTT
447 AGCATCGATTCTCGTAATAGTCTCCATTCTT
* ** * *
364763 TTCTAGATTAGGAAA-CAAAAACACATTCCTTTCATTAGCGTACCCGACATTGATGCCTTGTTGA
1 TTCAAGATTAGGAAACCAAAAACACATTCCTTTCATTAGCGTACATGACATTGATGCTTTGGTGA
* * * * * *
364827 TGTAAAATACGC-TTTCCTACCACCATTTTTGATAGAATAAAAGTTTGTCTCTTAAAAAAGAGAA
66 CGCAAAATAAGCTTTTCCTACCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGAGAA
* * * * * *
364891 ACTAGAATAGTCGTACAAATCCCTATTCTTTTCTGGATTAGGCACCAT-AATGTTAGTCTTCCCG
131 ACTAGAATAGTCATACTAATCCCTATTCTTTTCTAGATTAGGCACCATAAACG-TAGTCTTCTCA
* *
364955 TAAGGATACACGATATTGATGCTTTGGTTTTGAGAGACAA-GCTTTCTT-TCCCTCGATTTTTGT
195 TAAGGATACACGATATTGATGCTTTGGTTTTGAAAGA-AAGGCTTTCTTCTCCCT-AATTTTTGT
* * * *
365018 AAAGTTTGACTTTGTGCCTCAAGCGAGACAAACAGTGATTCTAGTAATGGCCTTCATTCATTTTG
258 AAAGTCTGACTTCGTGCCTCAAACGAGACAAACATTGATTCTAGTAATGGCCTTCATTCATTTTG
* *
365083 TAATTAGGCACTGTAAACACATTCTTCATATTAGGATAAAGGATAATGATGATTTTCTTTTGCAT
323 TAATTAGGCACTATAAACACATTCTTCACATTAGGATAAAGGATAATGATGATTTTCTTTTGCAT
* * *
365148 GGAAGTCTTTTCTTTGCCTTATTTGCCTTAAAATCAAAGTTTATCCCTGAAATAAGGCAAGCATC
388 GGAAATCTTTTCTTTGCCTTATTTACCTTAAAATCAAAGTTTATCCCTTAAATAAGGCAAGCATC
*
365213 GATTCTCATAATAGTCTCCATTCTT
453 GATTCTCGTAATAGTCTCCATTCTT
* * * * * * *
365238 TGCAAGAATCGG-AACCAAAAACACACTCCCTTCATTATG-ATACGTGACATTGATGCTTTGGTG
1 TTCAAGATTAGGAAACCAAAAACACATTCCTTTCATTA-GCGTACATGACATTGATGCTTTGGTG
* * * * **
365301 ACGCAAAATGAGCTTTTCTTACCACCGTTTTTGATAGAATCAAAATTTATCTCTTAAATTGGAGA
65 ACGCAAAATAAGCTTTTCCTACCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGAGA
* *
365366 AACTAGAATAGTCAAACTAATCCCTATTCTTTT-TAGGATTAAGCACCATAAACGTAGTCTTCTC
130 AACTAGAATAGTCATACTAATCCCTATTCTTTTCTA-GATTAGGCACCATAAACGTAGTCTTCTC
365430 ATAAGGATACACGATATTGATGCTTTGGTTTTGAAAGAAAGGCTTTC-T-TCCCTCAATTTTTGT
194 ATAAGGATACACGATATTGATGCTTTGGTTTTGAAAGAAAGGCTTTCTTCTCCCT-AATTTTTGT
*
365493 AAAGTCTGACATCGTGCCTCAAACGAGACAAACATTGATTCTAG-ATATGGCCTTCATTCATTTT
258 AAAGTCTGACTTCGTGCCTCAAACGAGACAAACATTGATTCTAGTA-ATGGCCTTCATTCATTTT
* *
365557 GTAATTAGGCACTACAAACACATTCTTCACTTTAGGATAAAGGATAATGATGATTTTCTTTTGCA
322 GTAATTAGGCACTATAAACACATTCTTCACATTAGGATAAAGGATAATGATGATTTTCTTTTGCA
** ** * *
365622 TTAAAATCTTTGGTTTGCCTTATTTACCTTAAAATCAAAGTTCATCCCTTAATTAAGGCAAGCAT
387 TGGAAATCTTTTCTTTGCCTTATTTACCTTAAAATCAAAGTTTATCCCTTAAATAAGGCAAGCAT
* * * *
365687 CGATTCTCGTAAGAATCTCCGTTCCT
452 CGATTCTCGTAATAGTCTCCATTCTT
* * *
365713 TTCAGGATTAGGAAA-CAAAAACACATTCCTTTCATTAGCGTATATGACATTAATGCTTTGGTGA
1 TTCAAGATTAGGAAACCAAAAACACATTCCTTTCATTAGCGTACATGACATTGATGCTTTGGTGA
* * ** *
365777 CGCAAAATAAGCTTTTCCTACCACCGTTTTTGATAGAATTAAAGTTTGCCTCCAAAATAAGACAA
66 CGCAAAATAAGCTTTTCCTACCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGAGAA
* * *
365842 AC-ATGAAAAGTCAAACTAATCCCTATTCTTTTCAAGATTAGGCACCATAAACGTAGTCTTCTCA
131 ACTA-GAATAGTCATACTAATCCCTATTCTTTTCTAGATTAGGCACCATAAACGTAGTCTTCTCA
* * * * *
365906 TAAGGATACACAATATTGATTCTTTGGTTTTGCAAGAAAAGCTTTCTTCACACC-AATTTTTGTA
195 TAAGGATACACGATATTGATGCTTTGGTTTTGAAAGAAAGGCTTTCTTCTC-CCTAATTTTTGTA
* * *
365970 AAGTATGACTTC-TGCCTCAATCGAGACAAACATTGATTCTAGTAATAGG-CTTCATTCAGTTTG
259 AAGTCTGACTTCGTGCCTCAAACGAGACAAACATTGATTCTAGTAAT-GGCCTTCATTCATTTTG
* * *
366033 TAATTAGGCACTATAAACACATTCTTCAAATTTGGATAAAGGTTAATGATGATTTTCTTTTGCAT
323 TAATTAGGCACTATAAACACATTCTTCACATTAGGATAAAGGATAATGATGATTTTCTTTTGCAT
* * *
366098 GGAAATC--TT-TTTGCCTTGTTTACCTTAAAATCAAAATTTATCCCTTAAATAAGGCTAGCATC
388 GGAAATCTTTTCTTTGCCTTATTTACCTTAAAATCAAAGTTTATCCCTTAAATAAGGCAAGCATC
* **
366160 GAATCTCGTAATAGTCTCGGTTCTT
453 GATTCTCGTAATAGTCTCCATTCTT
* * *
366185 TTCAAGATTAGGAAA-CAAAATACACATTCCTTTCATTAGCGTACCTAACATTGATGCGTTGGTG
1 TTCAAGATTAGGAAACCAAAA-ACACATTCCTTTCATTAGCGTACATGACATTGATGCTTTGGTG
* ** * *
366249 ACGCAAAATACGCTTTTCCTACCACTATTTTTAATAGAATCAAAGTTTGTCTCTTAAAAAAGAGA
65 ACGCAAAATAAGCTTTTCCTACCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGAGA
* * **
366314 AACTAGAATAGTCATACTAATCCTTGTTCTTTTCCGGATTAGGCACCATAAACGTAGTCTTCTCA
130 AACTAGAATAGTCATACTAATCCCTATTCTTTTCTAGATTAGGCACCATAAACGTAGTCTTCTCA
* * * *
366379 TAAGGATACATGATATTGATGCTTCGGTTTTGAAAGAAAGGCTTTCTTCACCCCAATTTTTGTAA
195 TAAGGATACACGATATTGATGCTTTGGTTTTGAAAGAAAGGCTTTCTTCTCCCTAATTTTTGTAA
* * *
366444 AGTCTGACTTCGTGCCTCAAACAAGGCAAACATTGATTCTAGAAATGGCCTTCATTCATTTTGTA
260 AGTCTGACTTCGTGCCTCAAACGAGACAAACATTGATTCTAGTAATGGCCTTCATTCATTTTGTA
* * *
366509 ATTATGCACTATAAACACATTTTTCAAATTAGGATAAAGGATAATGATGATTTTCTTTTGCATGG
325 ATTAGGCACTATAAACACATTCTTCACATTAGGATAAAGGATAATGATGATTTTCTTTTGCATGG
* *
366574 AAATCTTTTCTTTGCCTTATTTACCTTAAAATCAAAATTTATCCCTTAAATAAGGCTAGCATC-A
390 AAATCTTTTCTTTGCCTTATTTACCTTAAAATCAAAGTTTATCCCTTAAATAAGGCAAGCATCGA
* *
366638 TATCTCTTAATAGTCTCCGTTCTT
455 T-TCTCGTAATAGTCTCCATTCTT
** * * * *
366662 TTCAAGATTAGGAAATAAAAAACACATTCCTTTCATTAGTGTACCA-AACATTGATGCGTTGGGG
1 TTCAAGATTAGGAAACCAAAAACACATTCCTTTCATTAGCGTA-CATGACATTGATGCTTTGGTG
* ** * * *
366726 ACGCAAAATACGCTTTTCCTACCACTATTTTTAATAAAATCAAAGTTTGACTCTTAAATAAGAGA
65 ACGCAAAATAAGCTTTTCCTACCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGAGA
*
366791 AACTAGAATAGTCATACTAATCCCTGTTCTTTTCTAGATTAGGCACCATAAACGTAGTCTTCTCA
130 AACTAGAATAGTCATACTAATCCCTATTCTTTTCTAGATTAGGCACCATAAACGTAGTCTTCTCA
* * **
366856 TAAGGATACACAATATTTATGCTTTTCTTTT-AACAGAAAGGCTTTCTTCTCCCTAATTTTTGTA
195 TAAGGATACACGATATTGATGCTTTGGTTTTGAA-AGAAAGGCTTTCTTCTCCCTAATTTTTGTA
* * * *
366920 AAGTCTGACTTCTTGCCTCAAACGAGATAAACATTAATTCTAGTAATGGCTTTCATTCATTTTGT
259 AAGTCTGACTTCGTGCCTCAAACGAGACAAACATTGATTCTAGTAATGGCCTTCATTCATTTTGT
* * * *
366985 AATTAGGCACTATAAACACATTCTTCTCATTACGATGAAGGATAATGATGATTTTTCTTTTGTAT
324 AATTAGGCACTATAAACACATTCTTCACATTAGGATAAAGGATAATGATGA-TTTTCTTTTGCAT
* * * * * ** * * *
367050 AGAAATCTTTTCTTTCCCGTATTTACATTAAAATTAAAACTCATCCCTCAAAAAAGGCAAGCATC
388 GGAAATCTTTTCTTTGCCTTATTTACCTTAAAATCAAAGTTTATCCCTTAAATAAGGCAAGCATC
*
367115 GATTCTCTTAATAGTCTCCATTCTT
453 GATTCTCGTAATAGTCTCCATTCTT
* * * * *
367140 TTCGAGATTGGGAAA-CAAAAACACATTCGTTTCATTATCGTACATGACATTGATGCATTGGTGA
1 TTCAAGATTAGGAAACCAAAAACACATTCCTTTCATTAGCGTACATGACATTGATGCTTTGGTGA
* *
367204 CGCAAAATACA-TTTTTCCTACCACCGTTTTTGATAGAATTAAAGTTTGTCTCTTAAATAAGAGA
66 CGCAAAATA-AGCTTTTCCTACCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGAGA
* * ** *
367268 AACTAGAATAGTCA-ACCTCATTCCC-ATTCTTTT-TAGGATTTGGTGCAATAAACGTAGTCTTC
130 AACTAGAATAGTCATA-CT-AATCCCTATTCTTTTCTA-GATTAGGCACCATAAACGTAGTCTTC
* * * *
367330 TCATAAGGATACATGACATTCATGCTTTGGTTTTGAATGAAAGGCTTTCTTC-CCCTCAATTTTT
192 TCATAAGGATACACGATATTGATGCTTTGGTTTTGAAAGAAAGGCTTTCTTCTCCCT-AATTTTT
* * * *
367394 GTAAAGTCTGACTTCATGCCTCAAACAAGGCAAACATTGATTCTAGAAATGGCCTTCATTCATTT
256 GTAAAGTCTGACTTCGTGCCTCAAACGAGACAAACATTGATTCTAGTAATGGCCTTCATTCATTT
* *
367459 TGTAATTATGCACTATAAACACATTTTTCACATTAGGATAAAGGATAATGATGATTTTCTTTTGC
321 TGTAATTAGGCACTATAAACACATTCTTCACATTAGGATAAAGGATAATGATGATTTTCTTTTGC
* * * *
367524 ATGGAAATCTTTTCTTTGGCTTATTTGCCTTAAAATCAAAATTTAT-CCTTAAAATAATGCAAGC
386 ATGGAAATCTTTTCTTTGCCTTATTTACCTTAAAATCAAAGTTTATCCCTT-AAATAAGGCAAGC
* * * * *
367588 ATTGATTCTCATAACAGTCTCTATTCGT
450 ATCGATTCTCGTAATAGTCTCCATTCTT
* * *
367616 TTCAAGATT-GGGAGCCAAAAGCAC-TT-CTCTTCATTAG-GATACATGACATTGATGCTTTGGT
1 TTCAAGATTAGGAAACCAAAAACACATTCCT-TTCATTAGCG-TACATGACATTGATGCTTTGGT
* * * *
367677 GACACAAAA-AGAGCCTTTCTTACCACCGTTTTTGATAGAATCAAGGTTTGTCTCTTAAATAAGA
64 GACGCAAAATA-AGCTTTTCCTACCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGA
* * * * * ***
367741 GAAACTAGAATAGCCATACTAGTCCCTGTTCTTTTCTGGATTAGGCCCCATAGTGGTAGTCTTCT
128 GAAACTAGAATAGTCATACTAATCCCTATTCTTTTCTAGATTAGGCACCATAAACGTAGTCTTCT
* * *
367806 CATAAGGATACACGATATTCATGCTTTGGGTTTGAAAGAAAGGCTTTCTTCCTACC-AATTTTTG
193 CATAAGGATACACGATATTGATGCTTTGGTTTTGAAAGAAAGGCTTTCTT-CTCCCTAATTTTTG
* * *
367870 TAAAGTTTGACTTCGTGCCTCAAACGAGACAAACGTTGATTCTAGTAATGGCCTTCATTCATTTC
257 TAAAGTCTGACTTCGTGCCTCAAACGAGACAAACATTGATTCTAGTAATGGCCTTCATTCATTTT
* *
367935 GTAATTAGGCACTATAAACACATTCTTCACATTAGGATAAAGGATAATGATGATTTTCCTTTCCA
322 GTAATTAGGCACTATAAACACATTCTTCACATTAGGATAAAGGATAATGATGATTTTCTTTTGCA
* * * ** *
368000 TGAAAATCTTTTCTTTGCCTTATTTACATTAAAATCAAAGTTCATCATTTAAATAAGGCTAGCAT
387 TGGAAATCTTTTCTTTGCCTTATTTACCTTAAAATCAAAGTTTATCCCTTAAATAAGGCAAGCAT
* * *
368065 CAAATCTCGCAATAGTCTCCATTCTT
452 CGATTCTCGTAATAGTCTCCATTCTT
* * * *
368091 TTCAAGATTAGG-AACCAAAAGCACCTTCCATTCATTAG-GATACAAGACATTGATGCTTTGGTG
1 TTCAAGATTAGGAAACCAAAAACACATTCCTTTCATTAGCG-TACATGACATTGATGCTTTGGTG
* * * * * * * * *
368154 ATGCAAAAAAAGCTTTTCTTACCATCGTTTTTGATAGAATTAACGCTTGTCTCTTAGATAAGATA
65 ACGCAAAATAAGCTTTTCCTACCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGAGA
* * * *
368219 AAC-ATGAAGAGTCATACTAATCCCTATTCTTTTCAAGATTAGGCACCACAAACGCAGTCTTCTC
130 AACTA-GAATAGTCATACTAATCCCTATTCTTTTCTAGATTAGGCACCATAAACGTAGTCTTCTC
* * * *
368283 ATAAGGATACACGATATTCATGCTTTGGTTTTAAAAGAAAGGCCTTCTTCTCCCTGATTTTTGTA
194 ATAAGGATACACGATATTGATGCTTTGGTTTTGAAAGAAAGGCTTTCTTCTCCCTAATTTTTGTA
* * *
368348 AAGTCTGACTTCATGCCTCAAACGAGACAAACATTAATTCTAGTAATGGCTTTCATTCATTTTGT
259 AAGTCTGACTTCGTGCCTCAAACGAGACAAACATTGATTCTAGTAATGGCCTTCATTCATTTTGT
* * *
368413 AATTAGGCACTATAAACACATTCTTCTCATTAGGATGAAGGATAATGATGATTTTTCTTTTGTAT
324 AATTAGGCACTATAAACACATTCTTCACATTAGGATAAAGGATAATGATGA-TTTTCTTTTGCAT
* * * * * * *
368478 AGAAATCTTTTCTGTGCCATATTTACATTAAAATTAAAGTTCATCCCTTAAAAAAGGCAAGCATC
388 GGAAATCTTTTCTTTGCCTTATTTACCTTAAAATCAAAGTTTATCCCTTAAATAAGGCAAGCATC
**
368543 GATTCTTTTAATAGTCTCCATTCTT
453 GATTCTCGTAATAGTCTCCATTCTT
* * * * * *
368568 TTCAAGATTGGGAAA-CAAAAACTCATTCTTTTCATTACCGTACATGACGTTGATGCATTGGTGA
1 TTCAAGATTAGGAAACCAAAAACACATTCCTTTCATTAGCGTACATGACATTGATGCTTTGGTGA
* * * * * *
368632 TGCAAAATACGTTTTTCCTACCACCGTTTTTGATACAATTAAAGTTTGTCTCTTAAATAAGATAA
66 CGCAAAATAAGCTTTTCCTACCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGAGAA
* * ** *
368697 ACTAGAATAGTCA-ACCTCATCCCCATTCTTTT-TAGGATTAGGTGCAATAAACGTAGTCTTCTC
131 ACTAGAATAGTCATA-CTAATCCCTATTCTTTTCTA-GATTAGGCACCATAAACGTAGTCTTCTC
* * * *
368760 ATAAGGATACATGACATTCATGCTTTGGTTTTGAAAGAAAGGCTTTTTTC-CCCTCAATTTTTGT
194 ATAAGGATACACGATATTGATGCTTTGGTTTTGAAAGAAAGGCTTTCTTCTCCCT-AATTTTTGT
* * ** * *
368824 AAAGTCTGGCATCGAACCTCAAACCAGACAAA-AGTTGATTCCT-GTGATGGCCTTCATTCATTT
258 AAAGTCTGACTTCGTGCCTCAAACGAGACAAACA-TTGATT-CTAGTAATGGCCTTCATTCATTT
* * * * * *
368887 TGTAAATAGACACTATAAACACATTCTTCAC-TTCAGAATTAAGGATAATGATGTTTTTTTTTTG
321 TGTAATTAGGCACTATAAACACATTCTTCACATT-AGGATAAAGGATAATGATGATTTTCTTTTG
* * **
368951 CATGGAAATCTTTTCTTTGACTTATCTACCTTAAAATCAAAAAATTAT-CCTTAAAATAAGGCAA
385 CATGGAAATCTTTTCTTTGCCTTATTTACCTTAAAATC-AAAGTTTATCCCTT-AAATAAGGCAA
* *
369015 GCATTGATTCTCGTAACAGTCTCCATTCTT
448 GCATCGATTCTCGTAATAGTCTCCATTCTT
*** * * * *
369045 TTCAAGATT-GGGGGCCAAAAGCACTTTCCCTTCATTAG-GAGACATGACATTGATGCTTTGGTG
1 TTCAAGATTAGGAAACCAAAAACACATTCCTTTCATTAGCG-TACATGACATTGATGCTTTGGTG
* * * * *
369108 ACGCAAAA-AGAACCTTTCTTACCACCGTTTTTTATAGAATCAAGGTTTGTCTCTTAAATAAGAG
65 ACGCAAAATA-AGCTTTTCCTACCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGAG
* * * * * ** *
369172 AAACTAGAATAGCCATACTAATCCCTGTTCTTTTCTGGATTTGGCACGATAATGGTAGTCTTCTG
129 AAACTAGAATAGTCATACTAATCCCTATTCTTTTCTAGATTAGGCACCATAAACGTAGTCTTCTC
* ** * * *
369237 ATAAGGATACACTATATACATGCTTTGGTTTTGAAAGAAATGCTTTTTTC-CCACCAATTTTTGT
194 ATAAGGATACACGATATTGATGCTTTGGTTTTGAAAGAAAGGCTTTCTTCTCC-CTAATTTTTGT
* * * **
369301 AAAGTCTGACTTCGTGCCTCAAACGAGATAAACGTTGATTCTAGTAATGGCCTTCATTCATGTCA
258 AAAGTCTGACTTCGTGCCTCAAACGAGACAAACATTGATTCTAGTAATGGCCTTCATTCATTTTG
* * *
369366 TAATTAGGCACTATAAACACAATCTTCACATTAGGATAAAGGATAATGATGATTTTCCTTTCCAT
323 TAATTAGGCACTATAAACACATTCTTCACATTAGGATAAAGGATAATGATGATTTTCTTTTGCAT
* * * *
369431 GAAAATCTTTTCTTTGCCTTATTTACATTAAAATCAAAGTTCATCCCTTAATTAAGGCAAGCATC
388 GGAAATCTTTTCTTTGCCTTATTTACCTTAAAATCAAAGTTTATCCCTTAAATAAGGCAAGCATC
*
369496 GATTCTCGTAATAATCTCCATTCTT
453 GATTCTCGTAATAGTCTCCATTCTT
* * * *
369521 TTCAAGATCAGGAAA-CAAAAACACATTCTTTTCATTAGCGTATAGGACATTGATGCTTTGGTGA
1 TTCAAGATTAGGAAACCAAAAACACATTCCTTTCATTAGCGTACATGACATTGATGCTTTGGTGA
** * * *
369585 CGCAAAATAAGCTTTAACTACCACCGTCCTTT-ATAGAATCAAAGTTTGCCTCTTAAATAAGATA
66 CGCAAAATAAGCTTTTCCTACCACCGT-TTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGAGA
* * * *
369649 AACTAGAGTAGTCAAACTAATCCCTATTCTTTT-TAGGATTAGGCACCATCAACATAGTCTTCTC
130 AACTAGAATAGTCATACTAATCCCTATTCTTTTCTA-GATTAGGCACCATAAACGTAGTCTTCTC
* * * * *
369713 AAAAGGATACACAATATTCATGCTTTCGTTCTGAAAGAAAGGCTTTC--CT-CC-AATTTTTGTA
194 ATAAGGATACACGATATTGATGCTTTGGTTTTGAAAGAAAGGCTTTCTTCTCCCTAATTTTTGTA
* * * * *
369774 AAGCCTGACATCGTGCCTCAAATGGGACGAACATTGATTCCT-GTAATGGCCTTCATTCATTTTG
259 AAGTCTGACTTCGTGCCTCAAACGAGACAAACATTGATT-CTAGTAATGGCCTTCATTCATTTTG
* * * *
369838 TAATTAGGCACTATAAATACATTCTTCACATTAGGATAAAAGATAATAATGATTTTCATTTGCAT
323 TAATTAGGCACTATAAACACATTCTTCACATTAGGATAAAGGATAATGATGATTTTCTTTTGCAT
* *
369903 GGAAAT-TTTT-TTT-CCTTATTTACCTTAAAATCAAAGTTCATCCTTTAAATAAGGCAAGCATC
388 GGAAATCTTTTCTTTGCCTTATTTACCTTAAAATCAAAGTTTATCCCTTAAATAAGGCAAGCATC
* *
369965 GATTCTCGCAATAGTCTCTATTCTT
453 GATTCTCGTAATAGTCTCCATTCTT
* * *
369990 TTCAAGATTAGG-AACCAAAAGCACCTT-CTCTTCATTAG-GATACAAGACATTGATGCTTTGGT
1 TTCAAGATTAGGAAACCAAAAACACATTCCT-TTCATTAGCG-TACATGACATTGATGCTTTGGT
* * * ** * *
370052 GATGCAAAAAAAGCTTTTCTTACCATTGTTTTTGATAGAATTAGCA-TTTGTCTCTTAAATAAGA
64 GACGCAAAATAAGCTTTTCCTACCACCGTTTTTGATAGAATCA-AAGTTTGTCTCTTAAATAAGA
* * * * *
370116 TAAAC-ATGAAGAGTCATACTAATCCCTATTCTTTTCAAGATTAGGCACCACAAACGCAGTCTTC
128 GAAACTA-GAATAGTCATACTAATCCCTATTCTTTTCTAGATTAGGCACCATAAACGTAGTCTTC
* * * * * * * *
370180 TCATAAGGATATACGATATTGATACTTTGCTTTTGTAAGAAAAGCACTT-TTCCCCCCAATTTTT
192 TCATAAGGATACACGATATTGATGCTTTGGTTTTGAAAGAAAGGC-TTTCTTCTCCCTAATTTTT
** * ** * * *
370244 GTAAAGAATAACTTCCGTGCCTCAATTGAGACAAATATGGATTCTAGTAATGTCCTTCATTCATT
256 GTAAAGTCTGACTT-CGTGCCTCAAACGAGACAAACATTGATTCTAGTAATGGCCTTCATTCATT
370309 TTGTAATTAGGCACTATAAACACATTCTTCACATTAGGATAAAGGATAATGATGATTTTCTTTTG
320 TTGTAATTAGGCACTATAAACACATTCTTCACATTAGGATAAAGGATAATGATGATTTTCTTTTG
*
370374 CATGGAAATCTTTTCTTTGCCTTATTTACCTTAAAATCAAAGTTTATCCCTTAAATAAGGCAAGT
385 CATGGAAATCTTTTCTTTGCCTTATTTACCTTAAAATCAAAGTTTATCCCTTAAATAAGGCAAGC
* * *
370439 ATCGATTCTCATAACAATCTCCATTCTT
450 ATCGATTCTCGTAATAGTCTCCATTCTT
* * * * *
370467 TTCAAGATTGGGAAA-TAAAAACACATTCCTTTCATTAGCATACCTGACATTGATGCTTTGCTGA
1 TTCAAGATTAGGAAACCAAAAACACATTCCTTTCATTAGCGTACATGACATTGATGCTTTGGTGA
* *** *
370531 CGCCAAATAAGCTTTTCCTACCATAATTTTTGATAAAATCAAAGTTTGTCTCTTAAATAAGAGAA
66 CGCAAAATAAGCTTTTCCTACCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGAGAA
* * * * *
370596 A-TAAAATAGTCAAATTAATCCCTATTCTTTTCAAGATTAGGTACCATAAACGTAGTCTTCTCAT
131 ACTAGAATAGTCATACTAATCCCTATTCTTTTCTAGATTAGGCACCATAAACGTAGTCTTCTCAT
* * * * **
370660 AAGGATACACGATATTGATGCTTTCGTTTTGAGAGACAGGCTTTCTTCCCCCCGATTTTTGTAAA
196 AAGGATACACGATATTGATGCTTTGGTTTTGAAAGAAAGGCTTTCTTCTCCCTAATTTTTGTAAA
* * *
370725 GTTTGACTTTGTGCCTCAAACGAGACAAACATTGATTCTAGTAATAGCCTTCATTCATTTTGTAA
261 GTCTGACTTCGTGCCTCAAACGAGACAAACATTGATTCTAGTAATGGCCTTCATTCATTTTGTAA
370790 TTAGGCACTAT--A-ACATTCTTCACATTAGGATAAAGGATAATGATGATTTTCTTTTGCATGGA
326 TTAGGCACTATAAACACATTCTTCACATTAGGATAAAGGATAATGATGATTTTCTTTTGCATGGA
* * *
370852 AATCTTTTCTTTGCCTTATCTACCTTAAAATCAAACTTTATCCCTTAAATAAGGCAAGCATCAAT
391 AATCTTTTCTTTGCCTTATTTACCTTAAAATCAAAGTTTATCCCTTAAATAAGGCAAGCATCGAT
* * *
370917 TCTTGTAACAATCTCCATTCTT
456 TCTCGTAATAGTCTCCATTCTT
* * ** * ** *
370939 TTCAAGATTGGGAAA-CAAAAACAGATTCCAATCATTAGCATATTTGACATTGATGCTTTGCTGA
1 TTCAAGATTAGGAAACCAAAAACACATTCCTTTCATTAGCGTACATGACATTGATGCTTTGGTGA
* * * * *
371003 CACCAAATAAGCTTTTCCCACCATCATTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGAGAA
66 CGCAAAATAAGCTTTTCCTACCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGAGAA
* * *
371068 ACAAAAATAGTCAAACTAATCCCTA-----TTC----TT--------T-----TA---TTCTCAT
131 ACTAGAATAGTCATACTAATCCCTATTCTTTTCTAGATTAGGCACCATAAACGTAGTCTTCTCAT
* * * * *
371108 AAGGATACACGATATTGACGCTTTCGATTTGAGAGAAAGGCTTTCTTC-CCCTTGATTTTTGTAA
196 AAGGATACACGATATTGATGCTTTGGTTTTGAAAGAAAGGCTTTCTTCTCCC-TAATTTTTGTAA
* * * * *
371172 AGTTTGACTTTGTGCCTCAAGCGAGACAAACATTGATTCTACTAATGGCTTTCATTCATTTTGTA
260 AGTCTGACTTCGTGCCTCAAACGAGACAAACATTGATTCTAGTAATGGCCTTCATTCATTTTGTA
* ** * * *
371237 ATTAGGCACTATAAACACGTTCTTGTCATTAGGATGAAGGATAATGATGATTTTCTTTTGTATAG
325 ATTAGGCACTATAAACACATTCTTCACATTAGGATAAAGGATAATGATGATTTTCTTTTGCATGG
* * * * *
371302 AAATCTTTTCTTTTCCTTATTTACATTAAAATCAAAGTTCATCCCTTAAAAAAGGCAAGCACCGA
390 AAATCTTTTCTTTGCCTTATTTACCTTAAAATCAAAGTTTATCCCTTAAATAAGGCAAGCATCGA
*
371367 TTCTCTTAATAGTCTCCATTCTT
455 TTCTCGTAATAGTCTCCATTCTT
* * * * **
371390 TTCAAGATTGGGAAA-CAAAAACACATTCCTTTCATTACCGTATATGACATTGATGCATCAGTGA
1 TTCAAGATTAGGAAACCAAAAACACATTCCTTTCATTAGCGTACATGACATTGATGCTTTGGTGA
* * * * *
371454 CGCAAAATACGTTTTTCCTACCACCGTTTTAGATAGAATTAAAGTTTGTCTCTTAAATAAGATAA
66 CGCAAAATAAGCTTTTCCTACCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGAGAA
* * ** * *
371519 ACTAGAATAGTCA-ACCTCATCCCCATTCTTTT-TAGGATTAGGTGCAATAAACATAGTCTTCTC
131 ACTAGAATAGTCATA-CTAATCCCTATTCTTTTCTA-GATTAGGCACCATAAACGTAGTCTTCTC
* * * * * * * * *
371582 ATAAGGATACACGACATTCATGCTTTGGTTTTGCAAGAAAAGCTTTTTTCCCCCCAACTTTTATA
194 ATAAGGATACACGATATTGATGCTTTGGTTTTGAAAGAAAGGCTTTCTTCTCCCTAATTTTTGTA
** * * * ** * *
371647 AAGAATAACTTTTGTGCGTCAATTGAGACAAATATGGATTCTAGTAATGGCCTTCATTCATTTTG
259 AAGTCTGAC-TTCGTGCCTCAAACGAGACAAACATTGATTCTAGTAATGGCCTTCATTCATTTTG
* *
371712 TAATTAGGCACTATAAACACATTCTTCACATTAGGATAAATGATAATGATGATTTTCATTTGCAT
323 TAATTAGGCACTATAAACACATTCTTCACATTAGGATAAAGGATAATGATGATTTTCTTTTGCAT
* *
371777 GAAAATCTTTTCTTTGCCTTATCTACCTTAAAATCAAAGTTTAT-CCTTAAATAAGGCAAGCATC
388 GGAAATCTTTTCTTTGCCTTATTTACCTTAAAATCAAAGTTTATCCCTTAAATAAGGCAAGCATC
* *
371841 GATTCTCGTAACAATCTCCATTCTT
453 GATTCTCGTAATAGTCTCCATTCTT
* * * *
371866 TTCAAGATTAGGGAA-CAAAAACACATTCCTTTCATTAGCATACCTGACATTGATGCTTTGCTGA
1 TTCAAGATTAGGAAACCAAAAACACATTCCTTTCATTAGCGTACATGACATTGATGCTTTGGTGA
* * * *
371930 CGCCAAATAAGCTTTTCCTACCATCATTTTTAATAGAATCAAAGTTTGTCTCTTAAATAAGAGAA
66 CGCAAAATAAGCTTTTCCTACCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGAGAA
* * * * * *
371995 ACAAAAATAGTCAAACAAATCCCTATTCTTTT-TAGGATTAGGCACCATAAACCTAGTCTTCTTA
131 ACTAGAATAGTCATACTAATCCCTATTCTTTTCTA-GATTAGGCACCATAAACGTAGTCTTCTCA
* * * * * **
372059 TAAGGATACAATGATATTGATGTTTTGGTTTTGAGAGACAGGCTTTCTTCCCCCCGATTTTTGTA
195 TAAGGATAC-ACGATATTGATGCTTTGGTTTTGAAAGAAAGGCTTTCTTCTCCCTAATTTTTGTA
* * * * *
372124 AAGTTTGACTTTGTGCCTCAAGCAAGACAAACATTGATTCTAGTAATGGCCTTCTTTCATTTTGT
259 AAGTCTGACTTCGTGCCTCAAACGAGACAAACATTGATTCTAGTAATGGCCTTCATTCATTTTGT
* * * *
372189 AATTAGGCACCATAAACACATTCTTCACA-TAGGATAAAAGATAATAATGATTTTCATTTGCATG
324 AATTAGGCACTATAAACACATTCTTCACATTAGGATAAAGGATAATGATGATTTTCTTTTGCATG
* * *
372253 GAAATCTTTTCTTTGCCTTAGTTACCTTAAAATCAAAGTTCATCCTTTAAATAAGGCAAGCATCG
389 GAAATCTTTTCTTTGCCTTATTTACCTTAAAATCAAAGTTTATCCCTTAAATAAGGCAAGCATCG
* * *
372318 ATTCTTGCAATAGCCTCCATTCTT
454 ATTCTCGTAATAGTCTCCATTCTT
* * * * * * **
372342 TTCAAGATTAGG-AACCAAAAGCACCTTCCCTTCATTAGGGTACAAGACATTAATGCTTTAATGA
1 TTCAAGATTAGGAAACCAAAAACACATTCCTTTCATTAGCGTACATGACATTGATGCTTTGGTGA
* * * * * * * * *
372406 TGCAAAAAAAGCTCTTCTTACCATCGTTTTTTATACAATTAACA-TTTGTCTCTTAAATAAGATA
66 CGCAAAATAAGCTTTTCCTACCACCGTTTTTGATAGAATCAA-AGTTTGTCTCTTAAATAAGAGA
* * * **
372470 AAC-AGGAAGAGTCATACTAATCCCTATTCTTTTCAAGATTAGGCACCACAAACACAGTCTTCTC
130 AACTA-GAATAGTCATACTAATCCCTATTCTTTTCTAGATTAGGCACCATAAACGTAGTCTTCTC
* * * *
372534 ATAAGGATACACGATATTGATCCTTTGGTTTTGCAAGAAAAGCTTTTTTC-CCCTCAATTTTTGT
194 ATAAGGATACACGATATTGATGCTTTGGTTTTGAAAGAAAGGCTTTCTTCTCCCT-AATTTTTGT
** * ** * * *
372598 AAAGAATAACTTTCGTGCCTCAATTGAGAAAAATATGGATTCTAGTAATGGCCTTCATTCATTTT
258 AAAGTCTGAC-TTCGTGCCTCAAACGAGACAAACATTGATTCTAGTAATGGCCTTCATTCATTTT
*
372663 GTAATTAGGCACTATAAACACATTCTTCACATTAGGATAAAGGATAATGATGATTCTCTTTTGCA
322 GTAATTAGGCACTATAAACACATTCTTCACATTAGGATAAAGGATAATGATGATTTTCTTTTGCA
* * *
372728 TGGTAATCTTTTCTTTGCCTTATCTACCTTAAAATCAAAGTTTATTCCTTAAATAAGGCAAGCAT
387 TGGAAATCTTTTCTTTGCCTTATTTACCTTAAAATCAAAGTTTATCCCTTAAATAAGGCAAGCAT
* *
372793 CGATTCTCGTAACAATCTCCATTCTT
452 CGATTCTCGTAATAGTCTCCATTCTT
* * * * *
372819 TTCAAGATTAGGGAA-CAAAAGCACATTCCTTTCATTAGCATACCTGACATTGATGCTTTGCTGA
1 TTCAAGATTAGGAAACCAAAAACACATTCCTTTCATTAGCGTACATGACATTGATGCTTTGGTGA
* * * *
372883 CGCCAAATAAGCTTTTCCTACCATCATTTTAGATAGAATCAAAGTTTGTCTCTTAAATAAGAGAA
66 CGCAAAATAAGCTTTTCCTACCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGAGAA
* * *
372948 ACAAAAATAGTCAAACTAATCCCTATTCTTTT-TAGGATTAGGCACCATAAACGTAGTCTTCTCA
131 ACTAGAATAGTCATACTAATCCCTATTCTTTTCTA-GATTAGGCACCATAAACGTAGTCTTCTCA
* * * *
373012 TAAGGATACATGATATTGATGCTTTGGTTTTGAGAGATAGGCTTTCTTC-CCCTTGATTTTTGTA
195 TAAGGATACACGATATTGATGCTTTGGTTTTGAAAGAAAGGCTTTCTTCTCCC-TAATTTTTGTA
* * * *
373076 AAGTTTGACTTTGTGCCTCAAGCGAGACAAACATTGATTCGAGTAATGGCCTTCATTCATTTTGT
259 AAGTCTGACTTCGTGCCTCAAACGAGACAAACATTGATTCTAGTAATGGCCTTCATTCATTTTGT
* * *
373141 AATTAGGCACTATAAACACATTCTTCACATTAGGATAAAAGATAATAATGATTTTCTTTTGCGTG
324 AATTAGGCACTATAAACACATTCTTCACATTAGGATAAAGGATAATGATGATTTTCTTTTGCATG
* *
373206 AAAATCTTTTCTTTGCCTTATTTACTTTAAAATCAAAGTTTATCCCTTAAATAAGGCAAGCATCG
389 GAAATCTTTTCTTTGCCTTATTTACCTTAAAATCAAAGTTTATCCCTTAAATAAGGCAAGCATCG
*
373271 ATTCTCATAATAGTCTCCATTCTT
454 ATTCTCGTAATAGTCTCCATTCTT
* * * *
373295 TTCAAGAATT-GG-AACCAAAAGCACATTCCTTTCATTATG-ATACGTGACATTGATGATTTGGT
1 TTCAAG-ATTAGGAAACCAAAAACACATTCCTTTCATTA-GCGTACATGACATTGATGCTTTGGT
* * * * * *
373357 GACGTAAAATGAGCTTTTCCTACCACCATTTTTGATAGAATCAAAATTTATCTCTTAAATTAGAG
64 GACGCAAAATAAGCTTTTCCTACCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGAG
*
373422 AAACTAGAATAGTCAAACTAATCCCTATTCTTTT-TAGGATTAGGCACCATAAACGTAGTCTTCT
129 AAACTAGAATAGTCATACTAATCCCTATTCTTTTCTA-GATTAGGCACCATAAACGTAGTCTTCT
*
373486 CATAAGGATACACGATATTGATGCTTTGGTTTTGAAAGAAAGGCTTTCTTC-CCCCAATTTTTGT
193 CATAAGGATACACGATATTGATGCTTTGGTTTTGAAAGAAAGGCTTTCTTCTCCCTAATTTTTGT
* * * * * *
373550 AAAGTTTGACATCGTGCCTTAAACGAGACGAACATTGATTCCAGTAATGGCTTTCATTCATTTTG
258 AAAGTCTGACTTCGTGCCTCAAACGAGACAAACATTGATTCTAGTAATGGCCTTCATTCATTTTG
*
373615 TAATTAGGCACTACAAACACATTCTTCACATTAGGATAAAGGATAATGATGATTTTCTTTTGCAT
323 TAATTAGGCACTATAAACACATTCTTCACATTAGGATAAAGGATAATGATGATTTTCTTTTGCAT
* ** * **
373680 GAAAATCTTTGGTTTGCCTTATTTACTTTAAAAT-AGAAGTTCGTCCCTTAAATAAGGCAAGCAT
388 GGAAATCTTTTCTTTGCCTTATTTACCTTAAAATCA-AAGTTTATCCCTTAAATAAGGCAAGCAT
373744 CGATTCTCGTAATAGTCTCCATTCTT
452 CGATTCTCGTAATAGTCTCCATTCTT
* * * * * *
373770 TTCAAGA-TCGGGAACCAAAAATACATTCCCTTCATTATG-TTACATGACATTGATGCTTTAGTG
1 TTCAAGATTAGGAAACCAAAAACACATTCCTTTCATTA-GCGTACATGACATTGATGCTTTGGTG
* * * * * * * *
373833 ATGCAAAA-AATGCTTTTCTTGCCATCGTTTTTGATAAAATTAAAGTTTGTCTCTTAAATTAGAC
65 ACGCAAAATAA-GCTTTTCCTACCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGAG
* * * * *
373897 AAGC-ATGAAGAGTCATACTAATCCCTATTCTTTTCAAGATTAGGCACCACAAACATAGTCTTCT
129 AAACTA-GAATAGTCATACTAATCCCTATTCTTTTCTAGATTAGGCACCATAAACGTAGTCTTCT
* * * * * * * * *
373961 CATAAGGGTACACGATATTGATTCTTTAGTTTGGCAAGAAAAGCTTTTTTCCCCCCAATTTTTGT
193 CATAAGGATACACGATATTGATGCTTTGGTTTTGAAAGAAAGGCTTTCTTCTCCCTAATTTTTGT
* ** * **
374026 AAAGTCTAACTTTCGTGCCTCAATTGAGACAAATAAGGATTCTCA-TAATGGCCTTCATTCATTT
258 AAAGTCTGAC-TTCGTGCCTCAAACGAGACAAACATTGATTCT-AGTAATGGCCTTCATTCATTT
* * * * *
374090 TGTGATTAGGAACTATAAATACATTCTCCACATTAGAATAAAGGATAATGATGATTTTCTTTTGC
321 TGTAATTAGGCACTATAAACACATTCTTCACATTAGGATAAAGGATAATGATGATTTTCTTTTGC
* * * * * *
374155 ATGAAAATCTTTTGTTTGCCATATTTACCTTAAAATCAAAGTTCATCCTTTAAATAAGGCAAGCT
386 ATGGAAATCTTTTCTTTGCCTTATTTACCTTAAAATCAAAGTTTATCCCTTAAATAAGGCAAGCA
* *
374220 TCGATTCTCATAACAGTCTCCATTCTT
451 TCGATTCTCGTAATAGTCTCCATTCTT
* * * * *
374247 TTCAAGATT-GGGAACCAAAATCCCATTCCCTTT-ACTT-G-GATACAAGATATTGATGCTTTGG
1 TTCAAGATTAGGAAACCAAAAACACATT-CCTTTCA-TTAGCG-TACATGACATTGATGCTTTGG
* * * * *
374308 TGATGTAAAAAAAGCCTTTT-TTACCACTGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAG
63 TGACGCAAAATAAG-CTTTTCCTACCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAG
* * * * *
374372 ATAAAAC-ATGAAGAGTCATACTAATCCTTATTCTTTTCTAGATTATGCACCATAAACATAGTCT
127 A-GAAACTA-GAATAGTCATACTAATCCCTATTCTTTTCTAGATTAGGCACCATAAACGTAGTCT
* * * *
374436 TCTCATAAGAATACACGATATTGATGCTTTGG-TTTCACAAGAAAAGCTTTCTTC-CCACCAATT
190 TCTCATAAGGATACACGATATTGATGCTTTGGTTTTGA-AAGAAAGGCTTTCTTCTCC-CTAATT
* * * * * * **
374499 TTTGTAATGTTTGACTTCATCCCTCAAATGAGACCAACATTGATTCTAGTAATGATCTTCATTCA
253 TTTGTAAAGTCTGACTTCGTGCCTCAAACGAGACAAACATTGATTCTAGTAATGGCCTTCATTCA
* *
374564 TTTTGTGATTAGGCACTATAAACACATTCTCCACATTAGGATAAAAGG-TAATGATGATTTTCTT
318 TTTTGTAATTAGGCACTATAAACACATTCTTCACATTAGGAT-AAAGGATAATGATGATTTTCTT
* * * *
374628 TTGCATGAAAATCTTTTGTTTGCCTTATTTACCTTAAAATCAAAGTTCATCCCTTAAATAAGGGA
382 TTGCATGGAAATCTTTTCTTTGCCTTATTTACCTTAAAATCAAAGTTTATCCCTTAAATAAGGCA
* **
374693 AGCA-CTGATTCTTGTAATAGTCTGTATTCTT
447 AGCATC-GATTCTCGTAATAGTCTCCATTCTT
* * * *
374724 TTCAAGATT-GGGAACCAAAAACACATTCCCTTT-ATTTG-GATATAAGACATTGATGCTTTGGT
1 TTCAAGATTAGGAAACCAAAAACACATT-CCTTTCATTAGCG-TACATGACATTGATGCTTTGGT
* * * ** * *
374786 GATGCAAAAAAAGC-TTTCCTTATCACTATTTTTGATAGAATCAAAGTTTGACTCTTAAAAAAGA
64 GACGCAAAATAAGCTTTTCC-TACCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGA
* *
374850 GAAACTAGAATAGTCAAACTAATCCTTATTCTTTTC-AGGATTAGGCACCATAAACGTAGTCTTC
128 GAAACTAGAATAGTCATACTAATCCCTATTCTTTTCTA-GATTAGGCACCATAAACGTAGTCTTC
* *
374914 TCACAAGGATACACGATATTGATGGTTTGGTTTTGAAAGAAAGGCTTTCTTC-CCCTCAATTTTT
192 TCATAAGGATACACGATATTGATGCTTTGGTTTTGAAAGAAAGGCTTTCTTCTCCCT-AATTTTT
* * * * **
374978 GTAAAGTCTAACTTCGAGCCTCAAATGAGACAAACATTGATTCTAGTAACGATCTTCATTCATTT
256 GTAAAGTCTGACTTCGTGCCTCAAACGAGACAAACATTGATTCTAGTAATGGCCTTCATTCATTT
* * * * * *
375043 TGTGATTAGGCACTATAAAC-CTATTCTCCTCCTTAGGATAAATGTAAATGTTATTGATGATTTT
321 TGTAATTAGGCACTATAAACAC-ATTCTTCACATTAGGATAAA-G-----GATAATGATGATTTT
* * * *
375107 CTTTTGCATGGAAATTTTTTCTTTGCCCTATTTACCTTAAAATCAAAGTTCATCCCTTGAATAAG
379 CTTTTGCATGGAAATCTTTTCTTTGCCTTATTTACCTTAAAATCAAAGTTTATCCCTTAAATAAG
* * *** *
375172 ACAAGTATCGATTCTCGTGGCAGTTTCCATTCTT
444 GCAAGCATCGATTCTCGTAATAGTCTCCATTCTT
* * * * *
375206 TTCAGGATTAAG-AACCAAAAACACATTCCCTTCAATAGAAG-ACATGACATTGATGCTTTGGTG
1 TTCAAGATTAGGAAACCAAAAACACATTCCTTTCATTAG-CGTACATGACATTGATGCTTTGGTG
* * * * *
375269 ACGCCAAAA-AAGCTGTTCATGCCACCGTTTCTGATAGAATCAAAATTTGTCTCTTAAAT-A-AG
65 ACG-CAAAATAAGCTTTTCCTACCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGAG
* * * *
375331 --AC------A---A-AC---T--CTATTCTTTTCAAGATTAGGTACCATAAACATGGTCTTCTC
129 AAACTAGAATAGTCATACTAATCCCTATTCTTTTCTAGATTAGGCACCATAAACGTAGTCTTCTC
* * * * * *
375379 ATAAGGATACATGATATTGATGCTTTGGCTTTGCAAGAAAAGCTTTTTTC-CCACCAATTTTTGT
194 ATAAGGATACACGATATTGATGCTTTGGTTTTGAAAGAAAGGCTTTCTTCTCC-CTAATTTTTGT
* * * ** * * *
375443 AATGTCTAACTTCATGCCTCAATTGAGAGAAACA-TGAATTCAAGTAAAGGCCTTCATTCATTTT
258 AAAGTCTGACTTCGTGCCTCAAACGAGACAAACATTG-ATTCTAGTAATGGCCTTCATTCATTTT
* * * * * ** *
375507 ATAATTAAGCATTATAAACACATTCTTCACTTTAGGATAAAAAGATAATGACAATTTTCTTTTGT
322 GTAATTAGGCACTATAAACACATTCTTCACATTAGGAT-AAAGGATAATGATGATTTTCTTTTGC
* * * *
375572 ATGGAAATCTTTTCTTCGCCTTATTTACCTTAAAATCGAAGTTCT-TCCCCTAAAGAAGGCAAGC
386 ATGGAAATCTTTTCTTTGCCTTATTTACCTTAAAATCAAAGTT-TATCCCTTAAATAAGGCAAGC
* * *
375636 ATCGATTCTCGTAACAATCTCCATTCAT
450 ATCGATTCTCGTAATAGTCTCCATTCTT
* * *
375664 TTCAAGATTTGG-AACCAAAAACACATTCC-TTCATTAG-GATACATGACATTGATGCTATAGTG
1 TTCAAGATTAGGAAACCAAAAACACATTCCTTTCATTAGCG-TACATGACATTGATGCTTTGGTG
* * * * *
375726 ATGTAAGAA-AAGCTTTT-CTCACCACCGTTTTTGATAGAATGAAAGTTTATCTCTCAAATAAG-
65 ACGCAA-AATAAGCTTTTCCT-ACCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGA
* * *
375788 GCAAAC-ATG-ATGAGTCATACTAATCCCTATTCTTTTC-ACAATTAGGCACCATAAACATAGTA
128 G-AAACTA-GAAT-AGTCATACTAATCCCTATTCTTTTCTA-GATTAGGCACCATAAACGTAGTC
* ** * * * *
375850 TTCTCTTAAGGATACATAATATTAATGCTTTGGTTTCGCAAGAATA-GCTTT-TTC-CCACCAAT
189 TTCTCATAAGGATACACGATATTGATGCTTTGGTTTTGAAAGAA-AGGCTTTCTTCTCC-CTAAT
* ** *
375912 TTTTGTAAAGTCTAACTTCGTGCCTCAATTGAGACAAACATGGATTCTAGTAATGGCCTTCATTC
252 TTTTGTAAAGTCTGACTTCGTGCCTCAAACGAGACAAACATTGATTCTAGTAATGGCCTTCATTC
* * * * * * *
375977 ATTTTGTGATTAGGCACTGTAAATATATTTTTCACATTA-GATAATGTATAATGATGATTTTC-T
317 ATTTTGTAATTAGGCACTATAAACACATTCTTCACATTAGGATAAAGGATAATGATGATTTTCTT
*
376040 TTGCCATGGAAATCTTTTCTTTGCCTTATTTACCTTAAAATCAAAGTTCATCCCTTAAATAAGGC
382 TTG-CATGGAAATCTTTTCTTTGCCTTATTTACCTTAAAATCAAAGTTTATCCCTTAAATAAGGC
* * *
376105 AATCATCGATTCTCATAACAGTCTCCATTCTT
446 AAGCATCGATTCTCGTAATAGTCTCCATTCTT
* * **
376137 TTCAAGATTAAG-AACCAAAAACACATTCCTTTCATTAG-GATACATGACATTTACACTTTGGTG
1 TTCAAGATTAGGAAACCAAAAACACATTCCTTTCATTAGCG-TACATGACATTGATGCTTTGGTG
* * * ** * * *
376200 ATGCAAAAAAAGCTTTTCTTACCACTATTTTTTTTTGATAAAATCAAAGTTTATCTCTTAATTTA
65 ACGCAAAATAAGCTTTTCCTACCAC----CGTTTTTGATAGAATCAAAGTTTGTCTCTTAA-ATA
* * * * * *
376265 AGAGAAACTAGAATAGTCATACTAATGCTTGTTCTTTT-TAGGATTAGGCACTAAAAACGTAGTT
125 AGAGAAACTAGAATAGTCATACTAATCCCTATTCTTTTCTA-GATTAGGCACCATAAACGTAGTC
* * * * *
376329 TTCTCATAAGGATATATGATATTAATGCTTTGGTTTTGAAAGAAAGGCTTT-TTTTCCCCCAATT
189 TTCTCATAAGGATACACGATATTGATGCTTTGGTTTTGAAAGAAAGGCTTTCTTCT-CCCTAATT
* * * * * * * *** *
376393 TTTGTAAAGTCTTACTTTGTGCCACAAATGAGATAAACATTGATTATAATAATGATTTTCATTTA
253 TTTGTAAAGTCTGACTTCGTGCCTCAAACGAGACAAACATTGATTCTAGTAATGGCCTTCATTCA
* * * ** * ** * * *
376458 TTTTGTCATTAGCCATTGCAAACACATTCTCCTTATTAGGATAAATGTTATTGATGATTTTCTTT
318 TTTTGTAATTAGGCACTATAAACACATTCTTCACATTAGGATAAAGGATAATGATGATTTTCTTT
* * * * *
376523 TGCAAGAAAATCTTTTCTTTGCCCTATTTACCTTAAAATCAAAGTTCATCCTTTAAATAAGGCAA
383 TGCATGGAAATCTTTTCTTTGCCTTATTTACCTTAAAATCAAAGTTTATCCCTTAAATAAGGCAA
*
376588 GCATCGATTCTCGTAATAGTCTCTATT-TT
448 GCATCGATTCTCGTAATAGTCTCCATTCTT
* * * * * * *
376617 TTCAACATT-GGGAACCAAAAACACATTCCCTCCATTAG-GATACATGACGTTCATGCTATGGTG
1 TTCAAGATTAGGAAACCAAAAACACATTCCTTTCATTAGCG-TACATGACATTGATGCTTTGGTG
* * * * * * *
376680 ATGCAAAAAAAAAAACTTTTCTTACCATCG-TTTT--T-G--TCAAACTTTGTCTCTCAAATAAG
65 ACGC---AAAATAAGCTTTTCCTACCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAG
* * * * * * *
376739 ACAATC-ATGAA-ATGTCATACTTATCCCTATTTTTTTCAAGATTAGGCACCATAAACATAGTCG
127 AGAAACTA-GAATA-GTCATACTAATCCCTATTCTTTTCTAGATTAGGCACCATAAACGTAGTCT
* * * * *
376802 TCTCATAAGGATACACGATATTGTTGCTTTGGTTTTGCAAGAAAGGTTTTTTTCT-CATCAATTT
190 TCTCATAAGGATACACGATATTGATGCTTTGGTTTTGAAAGAAAGGCTTTCTTCTCCCT-AATTT
* * ** * ** *
376866 TTGTAAAGTCTAACTTTGTGCCTCAATTGAGAAAAACAAGGATTCTAGTAATGGCGTTCATTCAT
254 TTGTAAAGTCTGACTTCGTGCCTCAAACGAGACAAACATTGATTCTAGTAATGGCCTTCATTCAT
* * * * *
376931 TTTGTGATTAGGCACTGTAAACACATTCTTCACATTA-GATAAAGTATAGTGATGATTTTCTTTG
319 TTTGTAATTAGGCACTATAAACACATTCTTCACATTAGGATAAAGGATAATGATGATTTTCTTTT
* * * *
376995 GCATGGAAATCTTTTCTTTGCCTTATTTACCTTAAAATCAAAGTTTATTCGTTAAATAAAGCAAA
384 GCATGGAAATCTTTTCTTTGCCTTATTTACCTTAAAATCAAAGTTTATCCCTTAAATAAGGCAAG
* * *
377060 CATCGATTCTCATAACAGTCTCCACTCTT
449 CATCGATTCTCGTAATAGTCTCCATTCTT
* * * * * * *
377089 TTCAAAATTAAG-AACCAAAAGCACCTTCCCTTCATTAG-GATACATGACATTTATGCTTTGATG
1 TTCAAGATTAGGAAACCAAAAACACATTCCTTTCATTAGCG-TACATGACATTGATGCTTTGGTG
* ** * *
377152 ATGCAAAGA-AAGCTTTTTTTACCACCGTTTTTGATAAAATCAAAGTTTGTCTC-TAATTTAAGA
65 ACGCAAA-ATAAGCTTTTCCTACCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAA-ATAAGA
* *
377215 GAAACTAGAATAGTCATACTAATACCTGTTCTTTTC-AGGATTAGGCACC-TAAAACGTAGTCTT
128 GAAACTAGAATAGTCATACTAATCCCTATTCTTTTCTA-GATTAGGCACCAT-AAACGTAGTCTT
* * * * *
377278 CTCATAAGGATATATGAAATTGATGCTTTGGTTTTGAAAGAAAGGCTTTGTTC-CCCCAATTTTT
191 CTCATAAGGATACACGATATTGATGCTTTGGTTTTGAAAGAAAGGCTTTCTTCTCCCTAATTTTT
* * * * * * ***
377342 GAAAACTTTTACTTCGTGCCTCAAATGAGAC-AACATTGATTCTTGTAATAATCTTCATTCATTT
256 GTAAAGTCTGACTTCGTGCCTCAAACGAGACAAACATTGATTCTAGTAATGGCCTTCATTCATTT
* * * * * *
377406 TGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGTTATTGATGATTTTCTTTTGC
321 TGTAATTAGGCACTATAAACACATTCTTCACATTAGGATAAAGGATAATGATGATTTTCTTTTGC
*
377471 AAGGAAATCTTTTCTTTGCCTTATTTACCTTAAAATCAAAGTTCT-TCCCTTAAATAAGGCAAGC
386 ATGGAAATCTTTTCTTTGCCTTATTTACCTTAAAATCAAAGTT-TATCCCTTAAATAAGGCAAGC
* * *
377535 ATTGATTCTCGTAACAATCTCCATTCTT
450 ATCGATTCTCGTAATAGTCTCCATTCTT
* *
377563 TTCAAGATTA-GAAACCAAAAACACATT-CTCTTCATTAG-GAAACATGACATTGATGCTATGGT
1 TTCAAGATTAGGAAACCAAAAACACATTCCT-TTCATTAGCG-TACATGACATTGATGCTTTGGT
*** * * * * *
377625 GGTACAAAAAAAGCTTTTCTTACCACCGTTTTTTATAGAATCAAAGTTAGTCTCTTAAATAAGAT
64 GACGCAAAATAAGCTTTTCCTACCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGAG
* * * * * * *
377690 AAAC-ATGAAGAGTCATACTAATCCCTATTCTTTT-AATGATTAGGCATCGTAAACATAGCCGTC
129 AAACTA-GAATAGTCATACTAATCCCTATTCTTTTCTA-GATTAGGCACCATAAACGTAGTCTTC
* * * * *
377753 TCTTAAGGATACACGATATTGATGCTTTGGTTTTGAAAGAAATG-TTTTTTTTCACTAATTTTTG
192 TCATAAGGATACACGATATTGATGCTTTGGTTTTGAAAGAAAGGCTTTCTTCTCCCTAATTTTTG
* * * * * * ****
377817 TAAAGTCTAACTTCGTGCCTCAAATGAGACAAACA-AGAATCCCAATAATAATTTTCATTCATTT
257 TAAAGTCTGACTTCGTGCCTCAAACGAGACAAACATTG-ATTCTAGTAATGGCCTTCATTCATTT
* * * * **
377881 TGTGATTAAAG-ACTTTAAACATATTCTTCATGTTAGGATAACA-GATAATGATGATTTTCTTTT
321 TGTAATT-AGGCACTATAAACACATTCTTCACATTAGGATAA-AGGATAATGATGATTTTCTTTT
* * * *
377944 GCATGGAATTCTTTTCTTTGCCTTATTTACCTTAAAATCAAAGTTCATCGCTTAAATTAGGCAAG
384 GCATGGAAATCTTTTCTTTGCCTTATTTACCTTAAAATCAAAGTTTATCCCTTAAATAAGGCAAG
*
378009 CATCGATTCTCGTAATAGTCTGCATTCTT
449 CATCGATTCTCGTAATAGTCTCCATTCTT
* * * ** ** * *
378038 TTTAGGATTAGG-ATCCAAAAACACATTTCC-TTCATTAGAATATGTTACATTGATGCTTTGATG
1 TTCAAGATTAGGAAACCAAAAACACA-TTCCTTTCATTAGCGTACATGACATTGATGCTTTGGTG
* * * *
378101 ACGCAAAAAAAAGCTTTTCTTAACACCGTTTTTGATA-AAACAAAAGTTTGTCTCTTAAATAAGA
65 ACGC-AAAATAAGCTTTTCCTACCACCGTTTTTGATAGAATC-AAAGTTTGTCTCTTAAATAAGA
* * *
378165 GAAACTCA-AATAGTCATACTAATCCCCTA-CCTTTTTCAAGATTAGGCACCATAAACATAGTCT
128 GAAACT-AGAATAGTCATACTAAT-CCCTATTC-TTTTCTAGATTAGGCACCATAAACGTAGTCT
* * * *
378228 TCTCATAAGGATACACGGTATTGATGCTTTGGTTTCGCAAGAAAGGCTTTCTTC-CCCTAACTTT
190 TCTCATAAGGATACACGATATTGATGCTTTGGTTTTGAAAGAAAGGCTTTCTTCTCCCTAATTTT
* * ** *
378292 TGTAAAGTCTGACTTCGTGCCTCAAATGAGACAAAACAGTGATTCTAGTAATGATCTTCGTTCAT
255 TGTAAAGTCTGACTTCGTGCCTCAAACGAGAC-AAACATTGATTCTAGTAATGGCCTTCATTCAT
* * * * * * * *
378357 TTTGTGATTAGGCACTATAAACACAATCTCCTCATTAGGATAAATGTTATTAATGATTTTCTTTT
319 TTTGTAATTAGGCACTATAAACACATTCTTCACATTAGGATAAAGGATAATGATGATTTTCTTTT
* * * *
378422 GCATAGAAATCTTTTCTTTGCCCTT-TTTACCTTAAAATCAAAGTTCATCCCTTGAGTAAGGCAA
384 GCATGGAAATCTTTTCTTTG-CCTTATTTACCTTAAAATCAAAGTTTATCCCTTAAATAAGGCAA
* * * * ** *
378486 GTATCGAGTCTCATAACAGTCTCTGTTCAT
448 GCATCGATTCTCGTAATAGTCTCCATTCTT
* * * * *
378516 TTCAAGATTAGG-AACTAGAAACACACTCCCTTCATTAG-GATACATGACATTGATGCTATGGTG
1 TTCAAGATTAGGAAACCAAAAACACATTCCTTTCATTAGCG-TACATGACATTGATGCTTTGGTG
* ** * ** * *
378579 ATGCAAAATAAGCTTTTTTTACCATCGTTTTTGGCAGAATCAAAGTTTGTCTCTT-GATAAGACA
65 ACGCAAAATAAGCTTTTCCTACCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGAGA
* * * *
378643 AACAAGAAGAGTCATACTAATCCCTATTGTTTTC-ATGATTAGGCACCATAAACATAGTCTTCTC
130 AACTAGAATAGTCATACTAATCCCTATTCTTTTCTA-GATTAGGCACCATAAACGTAGTCTTCTC
* * * * * * *
378707 ATTAGCATACATGATATTGATGCTTTGGTTTTGCAAGTAAGGCTTTATT-TCAAGC-AATTTTTG
194 ATAAGGATACACGATATTGATGCTTTGGTTTTGAAAGAAAGGCTTTCTTCTC--CCTAATTTTTG
* * * * * * * *** *
378770 TAAAGTCTAACTTCGTGTCTCAAATGAGATAAAAATGGATTCCAGTAATAATCTTCATTTATTTT
257 TAAAGTCTGACTTCGTGCCTCAAACGAGACAAACATTGATTCTAGTAATGGCCTTCATTCATTTT
** ** * * * * * *
378835 GGGATTAGGCGTTATGAACACATTCTCCTCCTTAGGATAAATGATATTGATGATTTTCTTTTGCA
322 GTAATTAGGCACTATAAACACATTCTTCACATTAGGATAAAGGATAATGATGATTTTCTTTTGCA
* *
378900 TTGAAATCTTTTCTATGCC
387 TGGAAATCTTTTCTTTGCC
378919 AGATTGTGAA
Statistics
Matches: 16997, Mismatches: 2448, Indels: 831
0.84 0.12 0.04
Matches are distributed among these distances:
447 3 0.00
448 136 0.01
450 2 0.00
451 249 0.01
455 1 0.00
456 6 0.00
457 71 0.00
458 121 0.01
460 2 0.00
461 2 0.00
462 2 0.00
463 170 0.01
464 8 0.00
465 1 0.00
467 1 0.00
468 14 0.00
469 270 0.02
470 13 0.00
471 111 0.01
472 881 0.05
473 865 0.05
474 1465 0.09
475 4087 0.24
476 3704 0.22
477 3190 0.19
478 945 0.06
479 206 0.01
480 151 0.01
481 108 0.01
482 182 0.01
483 29 0.00
484 1 0.00
ACGTcount: A:0.32, C:0.18, G:0.14, T:0.36
Consensus pattern (477 bp):
TTCAAGATTAGGAAACCAAAAACACATTCCTTTCATTAGCGTACATGACATTGATGCTTTGGTGA
CGCAAAATAAGCTTTTCCTACCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGAGAA
ACTAGAATAGTCATACTAATCCCTATTCTTTTCTAGATTAGGCACCATAAACGTAGTCTTCTCAT
AAGGATACACGATATTGATGCTTTGGTTTTGAAAGAAAGGCTTTCTTCTCCCTAATTTTTGTAAA
GTCTGACTTCGTGCCTCAAACGAGACAAACATTGATTCTAGTAATGGCCTTCATTCATTTTGTAA
TTAGGCACTATAAACACATTCTTCACATTAGGATAAAGGATAATGATGATTTTCTTTTGCATGGA
AATCTTTTCTTTGCCTTATTTACCTTAAAATCAAAGTTTATCCCTTAAATAAGGCAAGCATCGAT
TCTCGTAATAGTCTCCATTCTT
Found at i:381167 original size:19 final size:19
Alignment explanation
Indices: 381145--381182 Score: 51
Period size: 19 Copynumber: 2.0 Consensus size: 19
381135 GATAAATTAT
381145 ATTGATGAT-TTTCTTTTGC
1 ATTGAT-ATCTTTCTTTTGC
*
381164 ATTGATATCTTTTTTTTGC
1 ATTGATATCTTTCTTTTGC
381183 TCTATTTACC
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
18 2 0.12
19 15 0.88
ACGTcount: A:0.16, C:0.11, G:0.13, T:0.61
Consensus pattern (19 bp):
ATTGATATCTTTCTTTTGC
Found at i:382126 original size:477 final size:475
Alignment explanation
Indices: 380480--382632 Score: 2626
Period size: 477 Copynumber: 4.5 Consensus size: 475
380470 GACAAACACG
* * *
380480 ATAAACGTAGTCTTCTCAT-AAGAATACACGATATTGTTGTTTTGGTTTCACAAGAAAGGCTTTT
1 ATAAACATAGTCTTCTCATAAAG-ATACACGATATTGATGCTTTGGTTTCACAAGAAAGGCTTTT
* * * * * * *
380544 TTCCCACCAATTTTTGTAAAGTCTAACTTCGTGCCTTAAATGAGATAAACATTGATTCAAGTAAT
65 TTCCAACCAATTTTTGTAAATTCTAACTTCGTGCCTCAAATGAGACAATCATGGATTCTAGTAAT
* * *
380609 GATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTACT-GATTAGGATAAATGATATT
130 GATCTTCATTCATTTTGTGAATAGGCACAATAAACACATTCTCCTCG-TTAGGATAAATGATATT
* * * * *
380673 GATGGTTTTCTTTTGCATGAAAATCTTTTCTTTGCCCTATTTTCCTTAAAATTAAAGTTCA-ACA
194 GATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTACCTTAAAATCAAAGTTCATCCA
* * ** * * *
380737 CTTAAATAAGATAAGCATCTATTCTCGTAACAGTCTCCATTCTTTTCAAGATTAGGAACCAAAAA
259 -TTGAGTAAGGCAAGCATCGATTCTCATAACAGTCTCCATTATTTTCAAGATTAGGAACCAAAAA
* * * * * * **
380802 CACGTTCCCTTCATTAGGATACGTAACATTGATGCTTTTATGATGCAAAAAAAGC-TTTTCTTTC
323 CACATTTCCTTCATTACGATACATGACATTGATGCATTGGTG-TGCAAAAAAAGCTTTTTC-TTC
* * * * * * *
380866 CACTAATTTTGATAGCATCAAAGTTTGTCTCCTAAGTAAGACAAACATGAAGAGTCATGCTAATC
386 CACCATTTTTGATAGAATCAAAGTTTATCTCTTAAATAAGACAAACATGAAGAGTCATACTAATC
* ** * *
380931 CCTATTCTTTTAAGGAGTAGGCACC
451 CCCAACCTTTTGAGGATTAGGCACC
* * * **
380956 ATAAACATAGTCTTCACA-AAAGGATAAATGATATTGATGC-TTGGTTTCACAAGAAACCCTTTT
1 ATAAACATAGTCTTCTCATAAA-GATACACGATATTGATGCTTTGGTTTCACAAGAAAGGCTTTT
* * * *
381019 TTCTC-GCTAATTTTTGT-AATGTCTAACTTTGTGCCTCAAAAGAGACCAA-CATGGATTCTAGT
65 TTC-CAACCAATTTTTGTAAAT-TCTAACTTCGTGCCTCAAATGAGA-CAATCATGGATTCTAGT
* * * * *
381081 AATGATCTTTATTCATTTTGTGATTTGGCACTATAAACACATTCTCCT-GATTAGGATAAATTAT
127 AATGATCTTCATTCATTTTGTGAATAGGCACAATAAACACATTCTCCTCG-TTAGGATAAATGAT
* * * * * *
381145 ATTGATGATTTTCTTTTGCATTGATATCTTTTTTTTGCTCTATTTACCTTAAAATCAAAATTTAT
191 ATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTACCTTAAAATCAAAGTTCAT
* * ** * * ** *
381210 CC--T-A-T-AGGCAAGTATCAATTCTTGTAACAGTCTCCACTCTTTTCAAGATCGGGAACCATA
256 CCATTGAGTAAGGCAAGCATCGATTCTCATAACAGTCTCCATTATTTTCAAGATTAGGAACCAAA
* * * * * *** * *
381270 AACACGTTAT-CTTCATTAGGATGCATGACATTGATACTTTGCCAATGC-AAAAAAGGTTTTTTT
321 AACACATT-TCCTTCATTACGATACATGACATTGATGCATTG-GTGTGCAAAAAAAGCTTTTTCT
* * * * * *
381333 TACCACTATTTCTGATAAAATCAAAGTTTACCTCGTAAATAAGAGAAACATGAAGAGTCATACTA
384 T-CCACCATTTTTGATAGAATCAAAGTTTATCTCTTAAATAAGACAAACATGAAGAGTCATACTA
** *** *
381398 ATCCTTATTATTTTCAGGATTAGGCACC
448 ATCCCCAACCTTTTGAGGATTAGGCACC
* * * * *** *
381426 GTAAACATAGTTTTCTCATAAGGATACATGATATTGATGCTTTGGTTTTGGAAAAAAGGCTTTTT
1 ATAAACATAGTCTTCTCATAAAGATACACGATATTGATGCTTTGGTTTCACAAGAAAGGCTTTTT
* * *
381491 TCCCACCAATTTTTGTAAAGTCTAAC-TCTATGCCTCAAATGAGACAAT-A--GATTCTAGTAAT
66 TCCAACCAATTTTTGTAAATTCTAACTTC-GTGCCTCAAATGAGACAATCATGGATTCTAGTAAT
* * *
381552 TATCTTCATTCATTTTTTG-ATCAGGCACAATAAACACATTCTCCTCATTAGGATAAATGATATT
130 GATCTTCATTCATTTTGTGAAT-AGGCACAATAAACACATTCTCCTCGTTAGGATAAATGATATT
* *
381616 GATGATTTTTTTTTGCATGAAAATCTTTTCTTTGCCCTATTTTA-CTTAAAATCAAAGTTCATCC
194 GATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTA-TTTACCTTAAAATCAAAGTTCATCC
* * *
381680 ATTGAGTATGGCAAGCATCGATTCTCATGACAGTCTCCATTATTTTCAAGATTAGGAGCCAAAAA
258 ATTGAGTAAGGCAAGCATCGATTCTCATAACAGTCTCCATTATTTTCAAGATTAGGAACCAAAAA
* * * *
381745 CACATTTCGTTCATTACGATACATGACATTGATGCATTGGTGTCGCAAGAAATGCTTTTTCGTCC
323 CACATTTCCTTCATTACGATACATGACATTGATGCATTGGTGT-GCAAAAAAAGCTTTTTCTTCC
* *
381810 ACCGTTTTTGATAGAATCAAAGTTTATCTCTTAAATAAGACAAACATGAATAGTCATACTAATCC
387 ACCATTTTTGATAGAATCAAAGTTTATCTCTTAAATAAGACAAACATGAAGAGTCATACTAATCC
381875 CCAACCTTTTTGAGGATTAGGCACC
452 CCAACC-TTTTGAGGATTAGGCACC
*
381900 ATAAACATAGTCTTCTCATAAAGATACACGATATTGATGCTTTGGTTTCACAAGAAAGGTTTTTT
1 ATAAACATAGTCTTCTCATAAAGATACACGATATTGATGCTTTGGTTTCACAAGAAAGGCTTTTT
* *
381965 TCCAACCAATTTTTGTAAATTCTAAGTTCGTGCCTCAAATGAGAGAATCATGGATTCTAGTAATG
66 TCCAACCAATTTTTGTAAATTCTAACTTCGTGCCTCAAATGAGACAATCATGGATTCTAGTAATG
* *
382030 ATTTTCATTCATTTTGTGAATAGGCACAAGAAACACATTCTCCTCGTTAGGATAAATGATATTGA
131 ATCTTCATTCATTTTGTGAATAGGCACAATAAACACATTCTCCTCGTTAGGATAAATGATATTGA
* * *
382095 TGATTTGCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTACCTTAAAATCGAAGTTCGTCCATT
196 TGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTACCTTAAAATCAAAGTTCATCCATT
* * *
382160 GAGTAAGGCAAGCATCGATTCTCATGACAGTCTCCATTATTTTCAAGATTGGGAGCCAAAAACAC
261 GAGTAAGGCAAGCATCGATTCTCATAACAGTCTCCATTATTTTCAAGATTAGGAACCAAAAACAC
* * *
382225 ATTTCCTTCATTACGATACATGACATTGATGCATTGGTGTCGCAAAAAATGCTTTTCCATCCACC
326 ATTTCCTTCATTACGATACATGACATTGATGCATTGGTGT-GCAAAAAAAGCTTTTTCTTCCACC
* * * *
382290 GTGTTTGATAGAATCAAAGTGTATCTCTTAAATAAGACAAACATGAATAGTCATACTAATCCCCA
390 ATTTTTGATAGAATCAAAGTTTATCTCTTAAATAAGACAAACATGAAGAGTCATACTAATCCCCA
*
382355 ACCTTTTGCAGAATTAGGCACC
455 ACCTTTTG-AGGATTAGGCACC
* *
382377 ATAAACATAGTCTTCTCATAAGGATACGCGATATTGATGCTTTGGTTTCACAAGAAAGGCTTTTT
1 ATAAACATAGTCTTCTCATAAAGATACACGATATTGATGCTTTGGTTTCACAAGAAAGGCTTTTT
* *
382442 TCCAACCAATTTTTGT-AATTCTAAGTTCGTGCCTCAAATGAGAGAATCATGGATTCTAGTAATG
66 TCCAACCAATTTTTGTAAATTCTAACTTCGTGCCTCAAATGAGACAATCATGGATTCTAGTAATG
*
382506 ATCTTCATTCATTTTGTGAATAGGCACAAGAAACACATTCTCCTCGTTAGGATAAATGATATTGA
131 ATCTTCATTCATTTTGTGAATAGGCACAATAAACACATTCTCCTCGTTAGGATAAATGATATTGA
* * *
382571 CGATTTGCTTTTGCATGGAAATCTTTTTTTTGCCCTATTTACCTTAAAATCAAAGTTCATCC
196 TGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTACCTTAAAATCAAAGTTCATCC
382633 CATAATTAAT
Statistics
Matches: 1462, Mismatches: 180, Indels: 70
0.85 0.11 0.04
Matches are distributed among these distances:
467 1 0.00
468 116 0.08
469 13 0.01
470 203 0.14
471 53 0.04
472 6 0.00
473 139 0.10
474 126 0.09
475 183 0.13
476 214 0.15
477 406 0.28
478 2 0.00
ACGTcount: A:0.32, C:0.18, G:0.14, T:0.36
Consensus pattern (475 bp):
ATAAACATAGTCTTCTCATAAAGATACACGATATTGATGCTTTGGTTTCACAAGAAAGGCTTTTT
TCCAACCAATTTTTGTAAATTCTAACTTCGTGCCTCAAATGAGACAATCATGGATTCTAGTAATG
ATCTTCATTCATTTTGTGAATAGGCACAATAAACACATTCTCCTCGTTAGGATAAATGATATTGA
TGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTACCTTAAAATCAAAGTTCATCCATT
GAGTAAGGCAAGCATCGATTCTCATAACAGTCTCCATTATTTTCAAGATTAGGAACCAAAAACAC
ATTTCCTTCATTACGATACATGACATTGATGCATTGGTGTGCAAAAAAAGCTTTTTCTTCCACCA
TTTTTGATAGAATCAAAGTTTATCTCTTAAATAAGACAAACATGAAGAGTCATACTAATCCCCAA
CCTTTTGAGGATTAGGCACC
Found at i:383053 original size:13 final size:13
Alignment explanation
Indices: 383035--383060 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
383025 TACACAAAGT
383035 ATGTATCGATACA
1 ATGTATCGATACA
383048 ATGTATCGATACA
1 ATGTATCGATACA
383061 CAAAAAATTG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:383058 original size:32 final size:33
Alignment explanation
Indices: 383017--383080 Score: 103
Period size: 32 Copynumber: 2.0 Consensus size: 33
383007 TAGCCAAACT
**
383017 TGTATCGATACACAAAGTA-TGTATCGATACAA
1 TGTATCGATACACAAAAAATTGTATCGATACAA
383049 TGTATCGATACACAAAAAATTGTATCGATACA
1 TGTATCGATACACAAAAAATTGTATCGATACA
383081 TTGGCTTGTA
Statistics
Matches: 29, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
32 17 0.59
33 12 0.41
ACGTcount: A:0.42, C:0.16, G:0.14, T:0.28
Consensus pattern (33 bp):
TGTATCGATACACAAAAAATTGTATCGATACAA
Found at i:388680 original size:13 final size:13
Alignment explanation
Indices: 388662--388700 Score: 69
Period size: 13 Copynumber: 3.0 Consensus size: 13
388652 CATTTTTCTT
388662 TGTATCGATACAA
1 TGTATCGATACAA
*
388675 TGTATCGATACAC
1 TGTATCGATACAA
388688 TGTATCGATACAA
1 TGTATCGATACAA
388701 GGGGATTATA
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
13 24 1.00
ACGTcount: A:0.36, C:0.18, G:0.15, T:0.31
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:388854 original size:20 final size:20
Alignment explanation
Indices: 388811--388856 Score: 58
Period size: 21 Copynumber: 2.2 Consensus size: 20
388801 AAATCTTTTG
388811 CAAAATACTTGTTTTTCACTT
1 CAAAATACTTGTTTTTCAC-T
*
388832 CAAATTACTTCGTTTTTCA-T
1 CAAAATACTT-GTTTTTCACT
388852 CAAAA
1 CAAAA
388857 CCAGCATCAA
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
20 5 0.23
21 9 0.41
22 8 0.36
ACGTcount: A:0.33, C:0.20, G:0.04, T:0.43
Consensus pattern (20 bp):
CAAAATACTTGTTTTTCACT
Found at i:390593 original size:39 final size:40
Alignment explanation
Indices: 390539--390629 Score: 105
Period size: 39 Copynumber: 2.3 Consensus size: 40
390529 GATTTTTTTT
* * *
390539 TTTAGTAAAAGGGGAGAATGCATAAATTTGCTAAAATTA-
1 TTTAGTTAAGGGGGAGAATGCACAAATTTGCTAAAATTAC
* * *
390578 TCTTA-TTAAGGGGGAGAATGTACGAATTTGTTAAAATTAC
1 T-TTAGTTAAGGGGGAGAATGCACAAATTTGCTAAAATTAC
390618 TTTAGTTAAGGG
1 TTTAGTTAAGGG
390630 AGAAAGAAAA
Statistics
Matches: 43, Mismatches: 6, Indels: 5
0.80 0.11 0.09
Matches are distributed among these distances:
39 32 0.74
40 11 0.26
ACGTcount: A:0.37, C:0.05, G:0.23, T:0.34
Consensus pattern (40 bp):
TTTAGTTAAGGGGGAGAATGCACAAATTTGCTAAAATTAC
Found at i:391216 original size:21 final size:21
Alignment explanation
Indices: 391190--391246 Score: 114
Period size: 21 Copynumber: 2.7 Consensus size: 21
391180 ACATGTTGCA
391190 ATGTATCGATACATGAAAAAG
1 ATGTATCGATACATGAAAAAG
391211 ATGTATCGATACATGAAAAAG
1 ATGTATCGATACATGAAAAAG
391232 ATGTATCGATACATG
1 ATGTATCGATACATG
391247 TCATTGGGAT
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 36 1.00
ACGTcount: A:0.44, C:0.11, G:0.19, T:0.26
Consensus pattern (21 bp):
ATGTATCGATACATGAAAAAG
Found at i:393022 original size:474 final size:471
Alignment explanation
Indices: 392073--393233 Score: 1485
Period size: 474 Copynumber: 2.4 Consensus size: 471
392063 AGCTTTCAAT
* * *
392073 TAAGACAAGCATCGATTCTCGTAACAGACTCCACTCTTTTCAAGATTGGGAACCAATAACATATT
1 TAAGACAAGCATCGATTCTCGTAACAGTCTCCA-T-TTTTCAAGATTGGGAACCAAAAACACATT
* * * * * * *
392138 CCCTTTATTAAGATATATGACATTGATGTTTTGGGGTTGCTAGAAATGCTTTTCTTTCCATCGTT
64 CCCTTTATTAGGATACATGACATTGATGCTTTGGGGTCGCAAGAAATGCTTTTCTTTCCACCATT
* * * * *
392203 TTTGATAGAATCAAAGTTTGTTTCGTAAAGAAAACAAACAAGAATACTCAAAGTAATCCACAATC
129 TTTGATAGAATC-AAGTTTGTCTCTTAAATAAAACAAACAAGAATACTCAAACTAATCC-CATTC
*
392268 TTTTCAGGATTAGGCACCATAAAAAGAGTCTTCTCATTTGGATACATGAAATTGATGCTTTGGTG
192 TTTTCAGGATTAGGCACCATAAAAAGAGTCTTCTCATTAGGATACATGAAATTGATGCTTTGGTG
* * *
392333 TCGCAAGAAAGGTTTTTTCCCACCAATTTTTGTAAAATCTAAGTTTGTGCCTCAAATGAGAGAAA
257 TCGCAAGAAAGGTTTTTTCCCACCAATTTTGGTAAAACCTAAGTTTGTGCCTCAAATGAGACAAA
* *
392398 CATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAATACATTCCCCACCTT
322 CATGGATTCTAGTAATGATCTTCATTCATTTTGTCATTAGGCACTATAAATACATTCCCCACATT
* ** *
392463 AGGGTAAATGATACTGATGATTTTCTTTTGTATGGAAATCTTTTCTTTGCCCTGTTTTCCTTAAA
387 AGGATAAATGATACTGATGATTTTCTTTTCAATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAA
*
392528 ATCAATGTTCATCTCTTAAA
452 ATCAAAGTTCATCTCTTAAA
* *
392548 TAAGACAAGCATCGATTCTCATAACAGTCTCCATTTTCTCCAA-ATTAGGAACCAAAAACACATT
1 TAAGACAAGCATCGATTCTCGTAACAGTCTCCATTTT-T-CAAGATTGGGAACCAAAAACACATT
** *
392612 CTGTTCATTAGGATACATGACATTGATGCTTTGGGGTCGCAAGAAATGCTTTTCTTTCCACCATT
64 CCCTTTATTAGGATACATGACATTGATGCTTTGGGGTCGCAAGAAATGCTTTTCTTTCCACCATT
* * ** * * * *
392677 TTTGGTAAAATCAATGTTTGTCTCTTAAATAGTACAAGCATGAATACTTATACTAATCCCTATTC
129 TTTGATAGAATCAA-GTTTGTCTCTTAAATAAAACAAACAAGAATACTCAAACTAATCCC-ATTC
** * * * * * * * *
392742 TTTTTTGGATTTGGCGCGATAAACATAGTTTTCTCATTAGGATACATGATATTGATGCTTTGGTT
192 TTTTCAGGATTAGGCACCATAAAAAGAGTCTTCTCATTAGGATACATGAAATTGATGCTTTGGTG
* * *
392807 TTGCAAGAAAGGCTTTTTT-TCACCAATTTTGGTAAAGCCTAAGTTCGTGTG-C-CAAAT-ACGA
257 TCGCAAGAAAGG-TTTTTTCCCACCAATTTTGGTAAAACCTAAGTT--TGTGCCTCAAATGA-GA
* * **
392868 CACACATGGATTCTAGTAATGATCTTCATTTATTTTGTCATTAGGCACTATAAACT-CATTCTTC
318 CAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTCATTAGGCACTATAAA-TACATTCCCC
* *
392932 TCATTAGGATAAATGATATTGATGATTTTCTTTTCAATGGAAATC-TTTCGTTTGCCCTATTTTC
382 ACATTAGGATAAATGATACTGATGATTTTCTTTTCAATGGAAATCTTTTC-TTTGCCCTATTTTC
392996 CTTAAAATCAAAGTTCAT-TCCTTAAA
446 CTTAAAATCAAAGTTCATCT-CTTAAA
* * *
393022 TAAGACAAGCATCGATTCTCGTAATAGTCTCAATTCTTTTCAAGATTGGGAACCAAAAACACAAT
1 TAAGACAAGCATCGATTCTCGTAACAGTCTCCA-T-TTTTCAAGATTGGGAACCAAAAACACATT
* * *
393087 CCCTTTATTAGCATACATGGCATTGATGC-TTGAGGGTCGCAAGAAATACTTTTCTTTCCACCAT
64 CCCTTTATTAGGATACATGACATTGATGCTTTG-GGGTCGCAAGAAATGCTTTTCTTTCCACCAT
*
393151 TTTTGATAGAATCTAAGTTTGTCTCTTAAATAAAACAAACAAGAATAGTCAAACTAATCCCCATT
128 TTTTGATAGAATC-AAGTTTGTCTCTTAAATAAAACAAACAAGAATACTCAAACTAAT-CCCATT
*
393216 CTTTTCAAGATTAGGCAC
191 CTTTTCAGGATTAGGCAC
393234 TGATAGAATC
Statistics
Matches: 586, Mismatches: 83, Indels: 34
0.83 0.12 0.05
Matches are distributed among these distances:
473 12 0.02
474 383 0.65
475 179 0.31
476 12 0.02
ACGTcount: A:0.31, C:0.18, G:0.15, T:0.36
Consensus pattern (471 bp):
TAAGACAAGCATCGATTCTCGTAACAGTCTCCATTTTTCAAGATTGGGAACCAAAAACACATTCC
CTTTATTAGGATACATGACATTGATGCTTTGGGGTCGCAAGAAATGCTTTTCTTTCCACCATTTT
TGATAGAATCAAGTTTGTCTCTTAAATAAAACAAACAAGAATACTCAAACTAATCCCATTCTTTT
CAGGATTAGGCACCATAAAAAGAGTCTTCTCATTAGGATACATGAAATTGATGCTTTGGTGTCGC
AAGAAAGGTTTTTTCCCACCAATTTTGGTAAAACCTAAGTTTGTGCCTCAAATGAGACAAACATG
GATTCTAGTAATGATCTTCATTCATTTTGTCATTAGGCACTATAAATACATTCCCCACATTAGGA
TAAATGATACTGATGATTTTCTTTTCAATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCA
AAGTTCATCTCTTAAA
Found at i:393267 original size:80 final size:80
Alignment explanation
Indices: 393154--393313 Score: 320
Period size: 80 Copynumber: 2.0 Consensus size: 80
393144 CCACCATTTT
393154 TGATAGAATCTAAGTTTGTCTCTTAAATAAAACAAACAAGAATAGTCAAACTAATCCCCATTCTT
1 TGATAGAATCTAAGTTTGTCTCTTAAATAAAACAAACAAGAATAGTCAAACTAATCCCCATTCTT
393219 TTCAAGATTAGGCAC
66 TTCAAGATTAGGCAC
393234 TGATAGAATCTAAGTTTGTCTCTTAAATAAAACAAACAAGAATAGTCAAACTAATCCCCATTCTT
1 TGATAGAATCTAAGTTTGTCTCTTAAATAAAACAAACAAGAATAGTCAAACTAATCCCCATTCTT
393299 TTCAAGATTAGGCAC
66 TTCAAGATTAGGCAC
393314 CATAAATATA
Statistics
Matches: 80, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
80 80 1.00
ACGTcount: A:0.40, C:0.19, G:0.11, T:0.30
Consensus pattern (80 bp):
TGATAGAATCTAAGTTTGTCTCTTAAATAAAACAAACAAGAATAGTCAAACTAATCCCCATTCTT
TTCAAGATTAGGCAC
Found at i:393842 original size:158 final size:159
Alignment explanation
Indices: 393631--394008 Score: 552
Period size: 158 Copynumber: 2.4 Consensus size: 159
393621 CGCATTCCCT
* * ** *
393631 TCATTAGGATACATGACATTGATGCTTT-AGG-CTGTAAGAAATGCTTTTCTTTCCACCGTTTTG
1 TCATTTGGATACATGATATTGATGCTTTGAGGTC-ACAAGAAATGCTTTTCTTTCCACCATTTTG
* *
393694 GATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACTCATACTAAT-CCTATTCTTT
65 GATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACTCATACTAATCCCCAATCTTT
*
393758 TCAGGATTAGGCACCATAAACATAGTCTTC
130 TAAGGATTAGGCACCATAAACATAGTCTTC
* *
393788 TCATTTGGATACATGATATTAATGCTTTGAGGTCACAAGAAATGCTTTTCTTTCCACCATTTTTG
1 TCATTTGGATACATGATATTGATGCTTTGAGGTCACAAGAAATGCTTTTCTTTCCACCATTTTGG
* * *
393853 ATAGAATCAAAGTTTGTCTCTTAGATAAGACAAGCATGAATAGTCATACTAATCCCCAATCTTTT
66 ATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACTCATACTAATCCCCAATCTTTT
393918 AAGGATTAGGCACCATAAACATAGTCTTC
131 AAGGATTAGGCACCATAAACATAGTCTTC
* *
393947 TCATTTGGATACATGATATTGATGCTTTG-GTTTCACAAGACAA-GCTTTT-TTCCCACCATTTT
1 TCATTTGGATACATGATATTGATGCTTTGAG-GTCACAAGA-AATGCTTTTCTTTCCACCATTTT
394009 TGTAAAGTTT
Statistics
Matches: 200, Mismatches: 16, Indels: 9
0.89 0.07 0.04
Matches are distributed among these distances:
157 25 0.12
158 93 0.47
159 80 0.40
160 2 0.01
ACGTcount: A:0.31, C:0.19, G:0.15, T:0.36
Consensus pattern (159 bp):
TCATTTGGATACATGATATTGATGCTTTGAGGTCACAAGAAATGCTTTTCTTTCCACCATTTTGG
ATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACTCATACTAATCCCCAATCTTTT
AAGGATTAGGCACCATAAACATAGTCTTC
Found at i:394192 original size:633 final size:616
Alignment explanation
Indices: 393234--394370 Score: 1478
Period size: 633 Copynumber: 1.8 Consensus size: 616
393224 GATTAGGCAC
* *
393234 TGATAGAATCTAAGTTTGTCTCTTAAATAAAACAAACAAGAATAGTCAAACTAATCCCCATTCTT
1 TGATAGAATCAAAGTTTGTCTCTTAAATAAAACAAACAAGAATAGTCAAACTAATCCCCAATCTT
* *
393299 TTCAAGATTAGGCACCATAAATATAGTCTTCTCATTTAGATACGTGATATTGATGCTTTGGACTC
66 TTCAAGATTAGGCACCATAAACATAGTCTTCTCATTTAGATACATGATATTGATGCTTTGGACTC
* * * * * *
393364 GCAAGAAAGGCCTTTTTCCCTTCAATTTTTGCCTTAAATGAGCCGAACAAGGATTCTGGTAATGA
131 ACAAGAAAGGCCTTTTTCCCTTAAATTTTTGCCCTAAACGAGCCAAACAAGGATTCTAGTAATGA
* * *
393429 TCCTTATTCATTTTGTGATTAGGTATTATAAACACATTATCCTCAGTAGGATAAATGATACAGAC
196 TCATTATTCATTTTGTGATTAGGCACTATAAACACATTATCCTCAGTAGGATAAATGATACAGAC
* * *
393494 AATTTTCTTTGGCATGGAAACAATTTCTTTGACATATTTTCCTTAAAATCAAAGTTTATCCCTTA
261 AATTTTCTTTGGCATGGAAACAATTTCTTTGACATATTTTCCTTAAAATCAAACTTCAACCCTTA
* ** *
393559 AATAAGACAAGCATCAATTCTTTTAACAGTCGCCAATATTTTCATTGAGTGGGAACCAAAAAC-G
326 AATAAGACAAGAATCAATTCTCCTAACAGTCGCCAATATTTTCA-AGAGTGGGAACCAAAAACAG
* **
393623 CATTCCCTTCATTAGGATACATGACATTGATGCTTTAGGCT-GTAAGAAATGCTTTTCTTTCCAC
390 -ATTCCCTTCATTAGGATACATGACATAGATGCTTTAGGCTCACAAGAAATGCTTTTCTTTCCAC
*
393687 CGTTTTGGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACTCATACTAATCCTA
454 CGTTTTGAATAGAATCAAAGTTTGTCTCTTAAATAAGAC-AACATGAATACTCATACTAATCCTA
393752 TTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATTTGGATACATGATATTAATGCTTTG
518 TTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATTTGGATACATGATATTAATGCTTTG
393817 AGGTCACAAGAAATGCTTTTCTTTCCACCATTTT
583 AGGTCACAAGAAATGCTTTTCTTTCCACCATTTT
* * * * *
393851 TGATAGAATCAAAGTTTGTCTCTTAGATAAGACAAGCATGAATAGTCATACTAATCCCCAATCTT
1 TGATAGAATCAAAGTTTGTCTCTTAAATAAAACAAACAAGAATAGTCAAACTAATCCCCAATCTT
* **
393916 TT-AAGGATTAGGCACCATAAACATAGTCTTCTCATTTGGATACATGATATTGATGCTTTGGTTT
66 TTCAA-GATTAGGCACCATAAACATAGTCTTCTCATTTAGATACATGATATTGATGCTTTGGACT
* * *
393980 CACAAGACAA-GCTTTTTTCCCACCATTTTTGTAAAGTTTAAGTTCGTGCCCTAAACGGGGCAAA
130 CACAAGA-AAGGCCTTTTT--C-CC-----T-TAAA--TT---TT--TGCCCTAAACGAGCCAAA
* *
394044 CATGGATTCTAGTAATGAT-ATTCATTCATTTTGTGATTAGGCACTATAAACACATTTTCC-CTA
178 CAAGGATTCTAGTAATGATCATT-ATTCATTTTGTGATTAGGCACTATAAACACATTATCCTC-A
** ** * * * * *
394107 GTAGGATAAATGATATTGATGATTTTCTTTTGCATGGAAATC-TTTTCTTTGCCCTATTTTTCTT
241 GTAGGATAAATGATACAGACAATTTTCTTTGGCATGGAAA-CAATTTCTTTGACATATTTTCCTT
* * * * *
394171 AAAATCAAACTTCAACCCTTAAATAAGACAAGAATCAATTCTCCTAATATTCTCCATTTTTTTCA
305 AAAATCAAACTTCAACCCTTAAATAAGACAAGAATCAATTCTCCTAACAGTCGCCAATATTTTCA
* * * * *
394236 AGATTGGGAACCAAAAACAGATTCCCTTCATTAGGATGCATTACATAGATGCTTTGGGGTCACAA
370 AGAGTGGGAACCAAAAACAGATTCCCTTCATTAGGATACATGACATAGATGCTTTAGGCTCACAA
* * *
394301 GAAATGCTTTTCTTTCCACCGTTTTTAATAGAATCAAAGTTTGTCTCTTTAGTAAGACAACATGA
435 GAAATGCTTTTCTTTCCACCGTTTTGAATAGAATCAAAGTTTGTCTCTTAAATAAGACAACATGA
394366 ATACT
500 ATACT
394371 TTGGTCTTGA
Statistics
Matches: 438, Mismatches: 59, Indels: 31
0.83 0.11 0.06
Matches are distributed among these distances:
616 2 0.00
617 127 0.29
618 2 0.00
619 1 0.00
620 2 0.00
625 1 0.00
626 3 0.01
628 2 0.00
631 2 0.00
632 66 0.15
633 229 0.52
634 1 0.00
ACGTcount: A:0.32, C:0.18, G:0.14, T:0.36
Consensus pattern (616 bp):
TGATAGAATCAAAGTTTGTCTCTTAAATAAAACAAACAAGAATAGTCAAACTAATCCCCAATCTT
TTCAAGATTAGGCACCATAAACATAGTCTTCTCATTTAGATACATGATATTGATGCTTTGGACTC
ACAAGAAAGGCCTTTTTCCCTTAAATTTTTGCCCTAAACGAGCCAAACAAGGATTCTAGTAATGA
TCATTATTCATTTTGTGATTAGGCACTATAAACACATTATCCTCAGTAGGATAAATGATACAGAC
AATTTTCTTTGGCATGGAAACAATTTCTTTGACATATTTTCCTTAAAATCAAACTTCAACCCTTA
AATAAGACAAGAATCAATTCTCCTAACAGTCGCCAATATTTTCAAGAGTGGGAACCAAAAACAGA
TTCCCTTCATTAGGATACATGACATAGATGCTTTAGGCTCACAAGAAATGCTTTTCTTTCCACCG
TTTTGAATAGAATCAAAGTTTGTCTCTTAAATAAGACAACATGAATACTCATACTAATCCTATTC
TTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATTTGGATACATGATATTAATGCTTTGAGG
TCACAAGAAATGCTTTTCTTTCCACCATTTT
Found at i:394742 original size:399 final size:399
Alignment explanation
Indices: 394044--394769 Score: 1037
Period size: 399 Copynumber: 1.8 Consensus size: 399
394034 ACGGGGCAAA
* * * *
394044 CATGGATTCTAGTAATGATATTCATTCATTTTGTGATTAGGCACTATAAACACATTTTCCCTAGT
1 CATGGATTCTAGTAATGATATTCATTCAGTTTGTGATTAGACACTACAAACACATTCTCCCTAGT
* * * * *
394109 AGGATAAATGATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTTCTTAAA
66 AAGATAAATGATATTGATGATTTTCTTTTGCATGAAAATATTTTCGTTGCCCTATTTTCCTTAAA
* * ** *
394174 ATCAAACTTCAACCCTTAAATAAGACAAGAATCAATTCTCCTAATATTCTCCATTTTTTTCAAGA
131 ATCAAACTTCAACCCTTAAATAAGACAAGAATCAATTCCCCTAACAGCCTCCATTCTTTTCAAGA
* * * * * *
394239 TTGGGAACCAAAAACAGATTCCCTTCATTAGGATGCATTACATAGATGCTTTGGGGTCACAAGAA
196 TTAGGAACCAAAAACACATTCCCTTCATTAGGATACATGACATAGATGCCTTAGGGTCACAAGAA
* * * *
394304 ATGCTTTTCTTTCCACCGTTTTTAATAGAATCAAAGTTTGTCTCTTTAGTAAGACAACATGAATA
261 AAGCTTCTCTTTCCAACGTTTTTAACAGAATCAAAGTTTGTCTCTTTAGTAAGACAACATGAATA
394369 CTTTGGTCTTGAAAGAAAGGCTTTCTACCCCCCAATTTTTGTAAAGTCTAAGTTCATGCTTCAAA
326 CTTTGGTCTTGAAAGAAAGGCTTTCTACCCCCCAATTTTTGTAAAGTCTAAGTTCATGCTTCAAA
394434 TAAGCCAAC
391 TAAGCCAAC
* * * *
394443 CATGGATTCTAGTAATGATCTTCATTTAGTTTGTGATTAGACACTACAAACGCATTCT-CCTTGT
1 CATGGATTCTAGTAATGATATTCATTCAGTTTGTGATTAGACACTACAAACACATTCTCCCTAG-
394507 TAAGATAAATGATATTGATGATTTTCTTTTGCATGAAAATATTTTCGTTGCCCTATTTTCCTTAA
65 TAAGATAAATGATATTGATGATTTTCTTTTGCATGAAAATATTTTCGTTGCCCTATTTTCCTTAA
* * * * *
394572 CATCAAAGTTCATCTCC-TAAATAAGACAAGCATTAATTCCCCTAACAGCCTCCATTCTTTT-AA
130 AATCAAACTTCAAC-CCTTAAATAAGACAAGAATCAATTCCCCTAACAGCCTCCATTCTTTTCAA
* * * *
394635 CGATTAGGAACCAAAAACACATTCTCTTTC-TTAGGATACATGACATTGATGCCTTAGTGTCGCA
194 -GATTAGGAACCAAAAACACATTC-CCTTCATTAGGATACATGACATAGATGCCTTAGGGTCACA
* *
394699 AGAAAAGCTTCTCTTTCCAACGTTTTTGACAGAATTAAAGTTTGTCTCTTTAGTAAGACAACATG
257 AGAAAAGCTTCTCTTTCCAACGTTTTTAACAGAATCAAAGTTTGTCTCTTTAGTAAGACAACATG
394764 AATACT
322 AATACT
394770 AACACTAATC
Statistics
Matches: 284, Mismatches: 39, Indels: 8
0.86 0.12 0.02
Matches are distributed among these distances:
398 6 0.02
399 272 0.96
400 6 0.02
ACGTcount: A:0.31, C:0.19, G:0.13, T:0.36
Consensus pattern (399 bp):
CATGGATTCTAGTAATGATATTCATTCAGTTTGTGATTAGACACTACAAACACATTCTCCCTAGT
AAGATAAATGATATTGATGATTTTCTTTTGCATGAAAATATTTTCGTTGCCCTATTTTCCTTAAA
ATCAAACTTCAACCCTTAAATAAGACAAGAATCAATTCCCCTAACAGCCTCCATTCTTTTCAAGA
TTAGGAACCAAAAACACATTCCCTTCATTAGGATACATGACATAGATGCCTTAGGGTCACAAGAA
AAGCTTCTCTTTCCAACGTTTTTAACAGAATCAAAGTTTGTCTCTTTAGTAAGACAACATGAATA
CTTTGGTCTTGAAAGAAAGGCTTTCTACCCCCCAATTTTTGTAAAGTCTAAGTTCATGCTTCAAA
TAAGCCAAC
Found at i:398628 original size:474 final size:472
Alignment explanation
Indices: 396867--401780 Score: 2986
Period size: 474 Copynumber: 10.2 Consensus size: 472
396857 GAAAACAGTG
* * * *
396867 TAAATGATATTGATGATTTTCTTTTGCAGGGAAATCTTTTCTTAGCCCTATTTTCCTTAAAATCA
1 TAAATGATACTGATGATTTT-TTTTGCATGAAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCA
* * * *
396932 AAGTTCATCCCTTAAAAAAGACAACCATCGATTCACGTAATAGTCTCCATTCTTTTTAAGATTAG
65 AAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGTAATAGTCTCCATTCTTTTAAAGATTAG
* * * * * * * *
396997 GATCTAAAAACACATTTCCTTTATTAGGATATATGACATTGATACTTTGGGGT-AGCAAGAAATG
130 GAACCAAAAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCA-CAAGAAAAG
* *
397061 CTTTTCTTTCCACCGTTTTTGATAGAATCAAAGCTTGTCTCTTAAATAAGACAAACATGAATACT
194 CTTTTCTTTCCAACGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATAC-
* * * **
397126 CATACTAATCCCCATTCCATTCAGGATTAGACACCATAAACATAGTCTTCTCATTAGGATACATG
258 CATACTAATCCCTATTCCTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATTAGGATACAAC
* * * * *
397191 ACATTGATACTTTGGTTTTGCAAGAAAGGCCTTTTTCCAATCAATTTTTGTAAAATCTAAGTTCG
323 ATATTGATGCTTTGG-TTTGCAAGAAAGG-CTTTTTCCCACCAATTTTTGTAAAGTCTAAGTTCG
** * * ** * * * *
397256 TATCTCAAATTAGACAAACATGTTTTCTAGAAATGAACTTCATTCATTTTGTGATTAGGCTCTAT
386 TGCCTCAAATGAGCCAAACATGGATTCTAGTAATGATCTTTATTCATTTTGTGATTAGGCACTAT
*
397321 AAACACTTTCTCCTCTTTAGGA
451 AAACACTTTCTCCTCATTAGGA
* *
397343 -AAATGATACTGATGATTGTCTTTTGCAT-AGAAACCTTTTCTTTGCCCTATTTTCCTTAAAATC
1 TAAATGATACTGATGATT-TTTTTTGCATGA-AAATCTTTTCTTTGCCCTATTTTCCTTAAAATC
* * * *
397406 AGATTTCATCCCTTAAATAAGACAACCATCGATTCTCGTAATAGTCACCATTCTTTTCAAAGATT
64 AAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGTAATAGTCTCCATTCTTTT-AAAGATT
* ** * * * **
397471 AGGAACC-AAAGCACATTTTCTTCATTAGGATGCATGACATTGAAGCTTTAGTGTTGCAAGAAAA
128 AGGAACCAAAAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCACAAGAAAA
* * * ** * *
397535 GCTTTTCTTTTCAACATTTTTGATAAAATCATTGCTTCTCTCTTAAATAAGACAAACATGAATAG
193 GCTTTTCTTTCCAACGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATA-
** * * *
397600 TTATACTAATCCCTATT-CTCTTCAAGATTAGGCACTATAAACATAGTCTTCTCATTAGCATACA
257 CCATACTAATCCCTATTCCT-TTCAGGATTAGGCACCATAAACATAGTCTTCTCATTAGGATACA
** * ** *
397664 TGATATTGATGCTTTGGTTT-CACCAGAAAGACTTTTTCCCATAAATTTTAGTAAAGTCTAAGTT
321 ACATATTGATGCTTTGGTTTGCA--AGAAAGGCTTTTTCCCACCAATTTTTGTAAAGTCTAAGTT
* * *
397728 CGTGCCTCAAATGAGCCAAACATGGATTCTAGCAATGATATTCATTCATTTTGTGATTAGGCACT
384 CGTGCCTCAAATGAGCCAAACATGGATTCTAGTAATGATCTTTATTCATTTTGTGATTAGGCACT
* * *
397793 ATAAACACATTCTCCTTATTATGA
449 ATAAACACTTTCTCCTCATTAGGA
*
397817 TAAATGATACTGATGATTTTTTTTGCATGAAAATCTTTTCTTTGCCCTATTTTTCTTAAAATCAA
1 TAAATGATACTGATGATTTTTTTTGCATGAAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAA
* * * * * * * *
397882 TGTTCTTCCATTAAATAATACAAGCATCGATTCTCATAATAGTCTCCATTTTTTTCAAGATT-CG
66 AGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGTAATAGTCTCCATTCTTTTAAAGATTAGG
* * * * * *
397946 ATCCAAAAACACACTCCCTTTATTAGGATAAATGACATTGATGCTTTGGGGTTGA-AAGAAAAGC
131 AACCAAAAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTG-TCACAAGAAAAGC
* * * **
398010 TTTTCTTTCCAACATTTTTGATAGAATCAAAGTTTGTCCCTTAAATGAGACAAACATGAATAGTT
195 TTTTCTTTCCAACGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATA-CC
* * * * * * *
398075 ATGCTAATCCCTATTCTTTTCAGGATTAGGCATCATAAACCTAATCTTCTCATAAAGATAC-ACG
259 ATACTAATCCCTATTCCTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATTAGGATACAAC-
398139 ATATTGATGCTTTGGTTATGCAAGAAAGGCTTTCTTCCC-CCAATTTTTGTAAAGTCTAAGTTCG
323 ATATTGATGCTTTGGTT-TGCAAGAAAGGCTTT-TTCCCACCAATTTTTGTAAAGTCTAAGTTCG
* * *
398203 TGCCTTAAATGAGCCAAAAATGGATTCTAGTAATGATCTTTATTCATTTCGCT-ATTAGGCACTA
386 TGCCTCAAATGAGCCAAACATGGATTCTAGTAATGATCTTTATTCATTTTG-TGATTAGGCACTA
*
398267 TAAACACTTTCTCCTCATTGGGA
450 TAAACACTTTCTCCTCATTAGGA
** * *
398290 TAAATGATACTGATGACTTTTTTTCACATGAAAATCTTTTTTTTTCCCTATTTTCCTTAAAATCA
1 TAAATGATACTGATGA-TTTTTTTTGCATGAAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCA
* * * *
398355 AAGTTCATCTCTTAAATAAGACAAGCATCGATTCTCTTAATAGTTTCCATTCTTTTAAAGATTGG
65 AAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGTAATAGTCTCCATTCTTTTAAAGATTAG
* * * *
398420 GAACCAAAAACGCATTCCCTTCGTTAGGATACTTGACATTGATGCTTTGGTGTCATAAGAAAAGC
130 GAACCAAAAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCACAAGAAAAGC
* * **
398485 TTTTCTTTTCAACGTTTTTGATAGAATCAAAGTTTGTCTCTTAAAAAAGACAAATGTGAATACCA
195 TTTTCTTTCCAACGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACCA
* * * * *
398550 TACTAGTCCCTATTCCTTTCAGGATTAGGCACCGTAAGCGTAGTCTTCTCATCAGGATACAACA-
260 TACTAATCCCTATTCCTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATTAGGATACAACAT
* * * * * * *
398614 AGTTGATGCTTTGG-TTCCACCAGAAAAGCTTTTTCCCTCAAATTTTTGTAGAGCCTAAGTTTGT
325 A-TTGATGCTTTGGTTTGCA--AGAAAGGCTTTTTCCCACCAATTTTTGTAAAGTCTAAGTTCGT
* * * *
398678 GCCGCAAGTGAGGCAAACATGGATTCTAGTAATGATCTTTGTTCATTTTGTGATTAGGCACTATA
387 GCCTCAAATGAGCCAAACATGGATTCTAGTAATGATCTTTATTCATTTTGTGATTAGGCACTATA
* * *
398743 AACACATTCTTCTCATTATGA
452 AACACTTTCTCCTCATTAGGA
*
398764 TAAATGATATTGATGATTTTCTTTTGCATGAAAATCTTTTCTTT-CCCATATTTTCCTTAAAATC
1 TAAATGATACTGATGATTTT-TTTTGCATGAAAATCTTTTCTTTGCCC-TATTTTCCTTAAAATC
** * * * *
398828 AAAGTTCATCCCTTAAATAAGACAAGCATAAATTCTCGTAACAGTCTCCATTCTTTTCAATATTG
64 AAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGTAATAGTCTCCATTCTTTTAAAGATTA
* * *
398893 GGAACTAAAAACACATTCCCTTCATTAGGATACATGATATTGATGCTTTGGTGTCATAAGAAAAG
129 GGAACCAAAAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCACAAGAAAAG
* * * * *
398958 CTTTTCTTTCCAACGTTTTTTATAGAATCAAAGTTTATCTTTTAAAAAAGA-TAA-ATG--TGA-
194 CTTTTCTTTCCAACGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAAT-AC
* * * * * **
399018 -ATACTAATCCCTATTCCTTTCAGGATTGGGCACCATAACCATAGTCTACTCATTAAGATGCATG
258 CATACTAATCCCTATTCCTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATTAGGATACAAC
* * *
399082 ATATTGATGGTTTGATTTCGCAAGAAAGGCTTTTTTCCCACCAATTTTTGTAAATTCTAAGTTCG
323 ATATTGATGCTTTGGTTT-GCAAGAAAGGC-TTTTTCCCACCAATTTTTGTAAAGTCTAAGTTCG
* * * * *
399147 TGCCTTAAATGTGCCAAACATGGATTCTAGTAGTGATCTTTATTCATTTTGTGACTAGGCATTAT
386 TGCCTCAAATGAGCCAAACATGGATTCTAGTAATGATCTTTATTCATTTTGTGATTAGGCACTAT
*
399212 AAACACATTT-TCCTCATTATGA
451 AAACAC-TTTCTCCTCATTAGGA
* * ** * * * **
399234 TAAGTGATTAAATG-TGCCAAACATGGATTCTAGTAGTG---ATCTTTATTCATTTTGTGACTA-
1 TAAATGA-T-ACTGATG------AT-TTTTTTTGCA-TGAAAATC-TT-TTC--TTTG-CCCTAT
** * ** * ** * *** *** * *
399294 -GGCATTATAAA-CACATTTTCCTCATTATGATAAGTGATACTGATAATTTTTTTTTGCATGGAA
51 TTTCCTTA-AAATCA-AAGTTCATCCCT-T-A-AA-T-A-A--GACAAGCATCGATT-C-TCGTA
** * *** * * *** * * * **
399357 ATCTTTTCC-TTGCCCTATTT--TCCTTA-AAATC-AAAGTTCA-TCCCTTAAATA--AGACAAA
104 ATAGTCTCCATT---CT-TTTAAAGATTAGGAACCAAAAACACATTCCCTTCATTAGGATACATG
* * * * * * * ** * * *
399414 ACATCGATTCTCGTGATAGTCTC-----CA-CTCTT-TTT---A-GCATTCGAAACCAA--AAAC
165 ACATTGATGCT-TTGGT-GTCACAAGAAAAGCTTTTCTTTCCAACGTTTTTGATA-GAATCAAA-
*** ** * * * *** ** * *
399466 ACAT-TCTCTTATTTAGGATACAGGACATTGACGCTTTAGGGTTGGAAGAAAT-GCT-TTTCTTT
226 GTTTGTCTCTTAAATA--AGACA-AACA-TGA----ATA-CCAT---ACTAATCCCTATTCCTTT
* * ** * * * * * * * *
399528 CCACCGTTTTTG-A-TAGAATCAAAGTTTGTCTC-TTA-AATAAGACAAACATGAATAGTCATAC
279 -CA-GGATTAGGCACCATAAACATAGTCT-TCTCATTAGGAT---AC-AACAT--AT--TGATGC
** * ** * ** *** *
399589 TAATCCCCATTCTTTTCAAGCCAAAAACATAGTCTTCCCATAAGGATACATG-ATA-T-TAATGC
333 T--T-----TGGTTTGCAAG--AAAGGC-T--TTTTCCCACCA--ATTTTTGTAAAGTCTAA-G-
* * * ** * * * * * *
399651 CTTAG-G-TTCAAAATAAAGGCTTTTTC-CCCCT-AATTTTTGTAAAG-TCTAAGTTTGTGCCTC
382 -TTCGTGCCTC-AAAT-GA-GC-----CAAACATGGATTCTAGTAATGATC----TTTAT---TC
* ** * ** * * *
399711 AAATGAGCTAAACATGG-ATTCTCA-AAATGA-TCTTCT-TTCATTTTGTGA
431 -ATTTTG-TGATTA-GGCA--CT-ATAAA-CACT-TTCTCCTCA-TTAG-GA
* * * *
399759 TTAGGCACT-ATA-AGCA-CATTCTTTCCATTAGGACAAATGATATTAATGAATTTCTTTTGTGT
1 -TA---AATGATACTG-ATGATT-TTT---TT-TG-C--ATG-----AA--AA--TC---T-T-T
* * * * *
399821 GGAAATCTTTTCTTCACCCTATTTTCCTTAAAATCAAATTTCATCCCTTAAATAAAATAATCATC
39 -----TC---T-TT-GCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATC
* * * * * *
399886 GATTCTCATAACAATTTCCATTC-TTTACAAGATTTGGAACCAAAAATACATTCCCTTCATTAAG
94 GATTCTCGTAATAGTCTCCATTCTTTTA-AAGATTAGGAACCAAAAACACATTCCCTTCATT-AG
* * * *
399950 G-TACATGACATTGATGCTTTGGGGTGGCA-AAG-AATGCTTTTCTTTCCACCGTTTTTGGTAGA
157 GATACATGACATTGATGCTTT--GGTGTCACAAGAAAAGCTTTTCTTTCCAACGTTTTTGATAGA
* * * *
400012 ATCAAAGTTTGTCACTTAAATAAGACAAACATTAATAGCCATACTAATCTCC-ATTCTTTTTAGG
220 ATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATA-CCATACTAATC-CCTATTCCTTTCAGG
** * * ** * * * *
400076 ATTAGGCACTGTAAACATAGTCCTCACATTAGGATACATGATACTGATTCTTTGG-CTCCACCAG
283 ATTAGGCACCATAAACATAGTCTTCTCATTAGGATACAACATATTGATGCTTTGGTTTGCA--AG
*** * *
400140 AAAGGC-TTTTCCCTTAAATTTTTGTAGAGTCTAAGTTCGTGCCTTAAATGAGCCAAACATCGG-
346 AAAGGCTTTTTCCCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGCCAAACAT-GGA
* * * *
400203 TTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCATTATAAACACATTCTCCTCTTTAGGA
410 TTCTAGTAATGATCTTTATTCATTTTGTGATTAGGCACTATAAACACTTTCTCCTCATTAGGA
* * * * * *
400266 TAAATGATATTGATAATTCTTTTGTGCATGAAAATCTTTTCTTTACCCTACTTTCCATAAAATCA
1 TAAATGATACTGATGATT-TTTTTTGCATGAAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCA
* ** * * * *
400331 AAGTACATCTATTAAATAAGACAAGCATCGATTCTCATAACAGTCTCCATTCTTTTCAAGATTGG
65 AAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGTAATAGTCTCCATTCTTTTAAAGATTAG
* * * ** * ** *
400396 GAACCAAAAACAAATTTCCTTCATTATGATACATGACATTGACACTTTGGGGTTGCAAGAAATGC
130 GAACCAAAAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCACAAGAAAAGC
* * * *
400461 TTTTCCTTT-CACCGTTTTTAATAGAATCAAAGTTTGTCTCTTAAAAAAGACAAACATGAATTGT
195 TTTT-CTTTCCAACGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAA-T-A
* * * * *
400525 CC-TACAAATCCCCA-TCATTTTCAGTG-TTAGGAACCATAAACATAGTCTTCTCATAAGGATAC
257 CCATACTAATCCCTATTC-CTTTCAG-GATTAGGCACCATAAACATAGTCTTCTCATTAGGATAC
** * * * *
400587 ATGATATTCATTCTTTGGTTTCGAAAGAAAGGCTTTCTTGCCC-CCAATTTTTG-AATAGTATAA
320 AACATATTGATGCTTTGGTTT-GCAAGAAAGGCTTT-TT-CCCACCAATTTTTGTAA-AGTCTAA
* * * *
400650 ATTCGTGCCTCAAATGTGCCAAACATGGATTCTAGTAGTGATCTTTATTCATTTTGTGATTAGGA
381 GTTCGTGCCTCAAATGAGCCAAACATGGATTCTAGTAATGATCTTTATTCATTTTGTGATTAGGC
* ** * *
400715 ATTATAAACAAATTCTCCTCTTTATGA
446 ACTATAAACACTTTCTCCTCATTAGGA
* * * * *
400742 TAAGTGATATTGATGATTTTCTTTTGCGTGGAAATCTTTTCCTTGCCCTATTTTCCTTAAAATCA
1 TAAATGATACTGATGATTTT-TTTTGCATGAAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCA
* * * * * * *
400807 AAGTTCATCCATTAAATAAGAGAAACATCGATTCTCATAATAGTCTCCACTCTTTTCAAGATTTG
65 AAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGTAATAGTCTCCATTCTTTTAAAGATTAG
* * * * *** *
400872 GAACCAAAAACACATTCTCTT-ATTTTGGATATAGGACATTGATGCTTTAGG-GTTGGAAGAAAT
130 GAACCAAAAACACATTCCCTTCA-TTAGGATACATGACATTGATGCTTT-GGTGTCACAAGAAAA
* *
400935 GCTTTTCTTTTCACCTGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATT
193 GCTTTTCTTTCCAAC-GTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAA-T
* * ** * * *
401000 GTCC-TACTAATCCCCATTATTTTCAGTATTAGGCACCATAGACATAGTCTTCTCATAAGGATAC
256 -ACCATACTAATCCCTATTCCTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATTAGGATAC
* * * * *
401064 -ACAATATTGATCCTTTGGTTTTGAAAAAAAGGTTTTCTTCCTC-CCAATTTTTGAAAAGTCTAA
320 AAC-ATATTGATGCTTTGG-TTTGCAAGAAAGGCTTT-TTCC-CACCAATTTTTGTAAAGTCTAA
* * * * * * *
401127 GTTCTTGACTCAAATGAGTCAAATATGGATTCTAGTAATGATCATCATTCACTTTGTGATTAGGC
381 GTTCGTGCCTCAAATGAGCCAAACATGGATTCTAGTAATGATCTTTATTCATTTTGTGATTAGGC
* * *
401192 TA-TGTAAACACATTCTCCTCAATAGGA
446 -ACTATAAACACTTTCTCCTCATTAGGA
* ** * *
401219 GAAATGATACAAATGATTTTCTTTAGCATGGAAATCTTTT-TTTG-CCTCATTTTCCTTAAAATC
1 TAAATGATACTGATGATTTT-TTTTGCATGAAAATCTTTTCTTTGCCCT-ATTTTCCTTAAAATC
* * ** * * * * * *
401282 AAAGTT-ATTCTCTTAAAAAAGACAAATATTGATTCTCATAACAGTCACCTTTCTTTTCAAGATT
64 AAAGTTCA-TCCCTTAAATAAGACAAGCATCGATTCTCGTAATAGTCTCCATTCTTTTAAAGATT
* ** * * * ** ***
401346 GGGAAATAAAAACA-ATTACCCTTTAATAGGATACTTGATGTTGATGCTTTGGTGTTGTAAGAAA
128 AGGAACCAAAAACACATT-CCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCACAAGAAA
* * * * * * *
401410 AGCTTCTCTTTCCAACGGTTTTGATAAAATCCAAGCTTGTCTCTTAAAAAAGACAAACCTGAATA
192 AGCTTTTCTTTCCAACGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATA
* * * * *
401475 CTAATACTAATCCCTTTTCCTTTTAGGATTAGGCACGATAAGCATAGTCTTCTCATTAGGATACA
257 C-CATACTAATCCCTATTCCTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATTAGGATACA
** ** * * *
401540 TGATATTGATGCTTTAATTTCACAAGAAAGTCTTTTTTCCCACCAATTTTTGT-AAGTCTAAATT
321 ACATATTGATGCTTTGGTTT-GCAAGAAAGGC-TTTTTCCCACCAATTTTTGTAAAGTCTAAGTT
* * *
401604 CGTGCCTCAAATGATCCAAACATGGATTCT-GCCAATGATCTTCATTCATTTTGTGATTAGGCAC
384 CGTGCCTCAAATGAGCCAAACATGGATTCTAG-TAATGATCTTTATTCATTTTGTGATTAGGCAC
* ** *
401668 TATAAACACATTCTTTTCTTTAGGA
448 TATAAACACTTTCTCCTCATTAGGA
** * * *
401693 TAAATGATACTGATGACTTTCCTCTACATGAAAATCTTTT-TTGTACCCTATTTTCCTTAAAATC
1 TAAATGATACTGATGA-TTTTTTTTGCATGAAAATCTTTTCTT-TGCCCTATTTTCCTTAAAATC
* * *
401757 AAATTTCATCGCTTAAAAAAGACA
64 AAAGTTCATCCCTTAAATAAGACA
401781 TTCCTTTCAT
Statistics
Matches: 3454, Mismatches: 706, Indels: 557
0.73 0.15 0.12
Matches are distributed among these distances:
469 71 0.02
470 111 0.03
471 8 0.00
472 15 0.00
473 328 0.09
474 1034 0.30
475 623 0.18
476 422 0.12
477 275 0.08
478 16 0.00
479 16 0.00
480 7 0.00
481 8 0.00
482 3 0.00
483 1 0.00
484 2 0.00
485 14 0.00
486 5 0.00
487 20 0.01
488 8 0.00
489 15 0.00
490 20 0.01
491 12 0.00
492 12 0.00
493 5 0.00
495 2 0.00
497 4 0.00
498 3 0.00
499 1 0.00
500 1 0.00
501 1 0.00
502 1 0.00
503 6 0.00
504 8 0.00
505 13 0.00
506 5 0.00
507 13 0.00
508 16 0.00
509 13 0.00
510 4 0.00
511 4 0.00
512 5 0.00
513 10 0.00
514 2 0.00
515 1 0.00
516 7 0.00
517 1 0.00
518 2 0.00
519 10 0.00
520 9 0.00
521 4 0.00
522 5 0.00
523 18 0.01
524 13 0.00
525 15 0.00
526 8 0.00
527 2 0.00
528 1 0.00
529 9 0.00
530 1 0.00
531 2 0.00
535 4 0.00
536 1 0.00
537 6 0.00
538 4 0.00
539 12 0.00
540 11 0.00
541 21 0.01
542 12 0.00
543 20 0.01
544 20 0.01
545 7 0.00
546 4 0.00
547 7 0.00
548 9 0.00
549 13 0.00
550 9 0.00
551 6 0.00
552 6 0.00
553 11 0.00
ACGTcount: A:0.32, C:0.18, G:0.13, T:0.37
Consensus pattern (472 bp):
TAAATGATACTGATGATTTTTTTTGCATGAAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAA
AGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGTAATAGTCTCCATTCTTTTAAAGATTAGG
AACCAAAAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCACAAGAAAAGCT
TTTCTTTCCAACGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACCAT
ACTAATCCCTATTCCTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATTAGGATACAACATA
TTGATGCTTTGGTTTGCAAGAAAGGCTTTTTCCCACCAATTTTTGTAAAGTCTAAGTTCGTGCCT
CAAATGAGCCAAACATGGATTCTAGTAATGATCTTTATTCATTTTGTGATTAGGCACTATAAACA
CTTTCTCCTCATTAGGA
Found at i:399304 original size:90 final size:90
Alignment explanation
Indices: 399151--399331 Score: 362
Period size: 90 Copynumber: 2.0 Consensus size: 90
399141 AGTTCGTGCC
399151 TTAAATGTGCCAAACATGGATTCTAGTAGTGATCTTTATTCATTTTGTGACTAGGCATTATAAAC
1 TTAAATGTGCCAAACATGGATTCTAGTAGTGATCTTTATTCATTTTGTGACTAGGCATTATAAAC
399216 ACATTTTCCTCATTATGATAAGTGA
66 ACATTTTCCTCATTATGATAAGTGA
399241 TTAAATGTGCCAAACATGGATTCTAGTAGTGATCTTTATTCATTTTGTGACTAGGCATTATAAAC
1 TTAAATGTGCCAAACATGGATTCTAGTAGTGATCTTTATTCATTTTGTGACTAGGCATTATAAAC
399306 ACATTTTCCTCATTATGATAAGTGA
66 ACATTTTCCTCATTATGATAAGTGA
399331 T
1 T
399332 ACTGATAATT
Statistics
Matches: 91, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
90 91 1.00
ACGTcount: A:0.31, C:0.14, G:0.15, T:0.39
Consensus pattern (90 bp):
TTAAATGTGCCAAACATGGATTCTAGTAGTGATCTTTATTCATTTTGTGACTAGGCATTATAAAC
ACATTTTCCTCATTATGATAAGTGA
Found at i:403383 original size:313 final size:314
Alignment explanation
Indices: 402971--403551 Score: 814
Period size: 313 Copynumber: 1.9 Consensus size: 314
402961 CTGTTACGTT
* * * *
402971 TAAGTTCGTGCCATAAACGAGTCAAACATAGATTCTAGTAATGATCTTCATTCATTTTGTGATTA
1 TAAGTTCGTGCCATAAACGAGCCAAACATAGATTCTACTAATGATCTTCAATCATTTTATGATTA
* * * *
403036 GGCACTATAAACAAATTCTCCTTATTAGGATAAATGGTGTTGAT-ATTTTCTTTTGCATGAAAAT
66 GGCACTATAAACAAATTCTACTTATTAAGATAAATGATATTGATGATTTTCTTTTGCATGAAAAT
*
403100 CTTTTTTT-CCCTATTTTTCT-TAAAATCAAAGTTCATC-CCTTAAATAAGAAAAGTATCGATTG
131 CTTTTTTTGCCCTA-TTTTCTGTAAAATCAAAGTTCATCACC-TAAATAAGAAAAGTATCGATTC
* * * *
403162 TCGTAATAGTCTCCATTCTTTTCAAGATTAGGAACCAAATACACATTCCCTTCATTAGGATACAT
194 TCGTAATAGTCTCCATT-TTTTCAACATTAAGAACAAAAAACACATTCCCTTCATTAGGATACAT
*
403227 GATATTGATGTTTTGGTTTCACAAGAAAGACTTTTTCCCATAAATTTTTGTAAAGTC
258 GACATTGATGTTTTGGTTTCACAAGAAAGACTTTTTCCCATAAATTTTTGTAAAGTC
** *
403284 TAAGTTCGTGCC-TCAAGTGAGCCAAACATGGATTCTACTAATGATCTTCAATCATTTTATGATT
1 TAAGTTCGTGCCAT-AAACGAGCCAAACATAGATTCTACTAATGATCTTCAATCATTTTATGATT
* * *
403348 AGGCCCTATAAACACATTCTACTCT-TTAAGATAAATGATATTGATGATTTTCTTTTGTATGAAA
65 AGGCACTATAAACAAATTCTACT-TATTAAGATAAATGATATTGATGATTTTCTTTTGCATGAAA
* *
403412 ATCTTTTTTTGGCCCTATTTTCTGTAAAATCAAAGTTCTTCACCTAAATAAGACAAGTATCGATT
129 ATCTTTTTTT-GCCCTATTTTCTGTAAAATCAAAGTTCATCACCTAAATAAGAAAAGTATCGATT
*** * * *
403477 CTCGTAATAGTCTTTGTTTTTTCAACATTAAGAACAAAAAACACATTTCCTTTATTAGTATACAT
193 CTCGTAATAGTCTCCATTTTTTCAACATTAAGAACAAAAAACACATTCCCTTCATTAGGATACAT
403542 GACATTGATG
258 GACATTGATG
403552 CTGTAGTGTC
Statistics
Matches: 233, Mismatches: 28, Indels: 12
0.85 0.10 0.04
Matches are distributed among these distances:
312 1 0.00
313 92 0.39
314 28 0.12
315 55 0.24
316 55 0.24
317 2 0.01
ACGTcount: A:0.32, C:0.17, G:0.13, T:0.39
Consensus pattern (314 bp):
TAAGTTCGTGCCATAAACGAGCCAAACATAGATTCTACTAATGATCTTCAATCATTTTATGATTA
GGCACTATAAACAAATTCTACTTATTAAGATAAATGATATTGATGATTTTCTTTTGCATGAAAAT
CTTTTTTTGCCCTATTTTCTGTAAAATCAAAGTTCATCACCTAAATAAGAAAAGTATCGATTCTC
GTAATAGTCTCCATTTTTTCAACATTAAGAACAAAAAACACATTCCCTTCATTAGGATACATGAC
ATTGATGTTTTGGTTTCACAAGAAAGACTTTTTCCCATAAATTTTTGTAAAGTC
Found at i:404204 original size:788 final size:784
Alignment explanation
Indices: 402385--404828 Score: 2899
Period size: 788 Copynumber: 3.1 Consensus size: 784
402375 ATACCAATCC
* * * * *
402385 CCATTCTTTTCAGGATTAGGCACC--ATAAACATAGT-CTTCTCATTAGGATACATGGTATAGAT
1 CCATTCTTTTCAAGATTAGGAACCAAATAAACAT--TCCCT-TCATTAGGATACATGATATTGAT
* * ** * ** *
402447 GCTTTGGTTTCATAAGAATGGTTGTTTTCCCACCAATTTTTGTAAAGTCTAAGTTCGTGTCTCAA
63 GCTTTGGTTTCACAAGAA-AG--ACTTTCTCATAAATTTTTGTAAAGTCTAAGTTCGTGCCTCAA
* * * * * * ** *
402512 ATGGGACAAACCTGGATTCTAGCAATGATATTCATTCATTTTGTGACAAGGCACCATAAACACAT
125 ATGAGCCAAACATGGATTCTAGTAATGATCTTCAATCATTTTGTGATTAGGCACTATAAACACAT
* * *
402577 TCTC-TTATTAGGATAAATGATATTGATGATTTTCTTTTGCATGGAAGTCTTTTCTTTACCCAAT
190 TTTCTTTATTAGGATAAATGATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCAAT
* * * *
402641 TTTCCTTAAAATCAAAGTTCATCCCTCAAATAAGTCAAGCATCGATTTTCATAACAGTCTCCATT
255 TTT-CTTAAAATCAAAGTTCATCCCT-AAATAAGACAAGCATCGATTCTCATAATAGTCTCTATT
* * * *
402706 CTTTTC-ACGATTGGGAACTAAAAACACATTCCCTTCATTACGATACAAGACATTGATGCTTCGG
318 CTTTTCAAC-ATTGGGAACAAAAAACACATTTCCTTTATTA-GATACATGACATTGATGCTTCGG
** * ** ** * * *
402770 GGTCATAAGAAATGCTTTTCTTTCGACCACTTTCGATAAAATCAAAGTTTGTTTCTTAAATAAGT
381 GGTCGCAAGAAATGCTTTTCTTTCCACCGTTTTTAATAGAATCAAAGTTTGTCTCTTAAATAAGA
* * * * *
402835 CAAACATTAATAGTTATACTAATCCCTATTATTTTCAGTATTAGGCACCATCAACAAAGTTTTCA
446 CAAACATGAATAGTTATACTAATCCCCATTATTTTCAGTATTAGGCACCATAAACAAAGTCTTCT
* * *
402900 CTTAAGGATACACGATATGGATGCTTTGGTTTTGAAAGAAACGCATTCTTCCCCCCAAATTCTGT
511 CATAAGGATACACGATATGGATGCTTTGGTTTTGAAAGAAAGGCATTCTT-CCCCCAAATTTTGT
* * * * * *
402965 TACGTTTAAGTTCGTGCCATAAACGAGTCAAACATAGATTCTAGTAATGATCTTCATTCATTTTG
575 AAAGTTTAAGTTCGTGCCACAAATGAGTCAAACATGGATTCTAATAATGATCTTCATTCATTTTG
*
403030 TGATTAGGCACTATAAACAAATTCTCCTTATTAGGATAAATGGTGTTGAT-ATTTTCTTTTGCAT
640 TGATTAGGCACTATAAACAAATTCTCC-TATTAGGATAAATGGTATTGATGATTTTCTTTTGCAT
403094 -GAAAATCTTTTTTTCCCTATTTTTCTTAAAATCAAAGTTCATCCCTTAAATAAGAAAAGTATCG
704 GGAAAATCTTTTTTTCCCTATTTTTCTTAAAATCAAAGTTCATCCCTTAAATAAGAAAAGTATCG
*
403158 ATTGTCGTAATAGTCT
769 ATTCTCGTAATAGTCT
* *
403174 CCATTCTTTTCAAGATTAGGAACCAAATACACATTCCCTTCATTAGGATACATGATATTGATGTT
1 CCATTCTTTTCAAGATTAGGAACCAAATAAACATTCCCTTCATTAGGATACATGATATTGATGCT
* *
403239 TTGGTTTCACAAGAAAGACTTTTTCCCATAAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAGTGA
66 TTGGTTTCACAAGAAAGAC--TTTCTCATAAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGA
* * * *
403304 GCCAAACATGGATTCTACTAATGATCTTCAATCATTTTATGATTAGGCCCTATAAACACATTCTA
129 GCCAAACATGGATTCTAGTAATGATCTTCAATCATTTTGTGATTAGGCACTATAAACACATT-TT
* * * * *
403369 CTCT-TTAAGATAAATGATATTGATGATTTTCTTTTGTATGAAAATCTTTT-TTTGGCCCTATTT
193 CTTTATTAGGATAAATGATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTT-GCCCAATTT
* * * * *
403432 TCTGTAAAATCAAAGTTCTTCACCTAAATAAGACAAGTATCGATTCTCGTAATAGTCTTTGTT-T
257 TCT-TAAAATCAAAGTTCATC-CCTAAATAAGACAAGCATCGATTCTCATAATAGTCTCTATTCT
** * *
403496 TTTCAACATTAAGAACAAAAAACACATTTCCTTTATTAGTATACATGACATTGATGCTGT-AGTG
320 TTTCAACATTGGGAACAAAAAACACATTTCCTTTATTAG-ATACATGACATTGATGCT-TCGGGG
* * ** * *
403560 TCGCAAGAAAAGCTTTACTTTCCAATGTTTTTTATAGAATCAAAGTTTGTCACTTAAATAAGACA
383 TCGCAAGAAATGCTTTTCTTTCCACCGTTTTTAATAGAATCAAAGTTTGTCTCTTAAATAAGACA
* * * *
403625 AACATGAATAGTTATAATAATCCCCATTATTTTCAGTATTTGACACCATAAACATAGTCTTCTCA
448 AACATGAATAGTTATACTAATCCCCATTATTTTCAGTATTAGGCACCATAAACAAAGTCTTCTCA
* **
403690 TAAGGATAGACGATATGGATGCTTTGGTTTTGAAAGAAAGGCATTCTTGCCTGCAAATTTTGTAA
513 TAAGGATACACGATATGGATGCTTTGGTTTTGAAAGAAAGGCATTCTT-CCCCCAAATTTTGTAA
*
403755 AGTTTAAGTTCGTGCCACAAATGAGTCAAACATGGATTCTAATAATGATCTTCATTTATTTTGTG
577 AGTTTAAGTTCGTGCCACAAATGAGTCAAACATGGATTCTAATAATGATCTTCATTCATTTTGTG
* * * *
403820 ATTAGGCACTATAAACAAATTCTTCTCATTAGGATAAATGGTATTGTTGATATTCTATTGCATGG
642 ATTAGGCACTATAAACAAATTCTCCT-ATTAGGATAAATGGTATTGATGATTTTCTTTTGCATGG
* * *
403885 AAATAT-TTTCTTTTCCCTATTTTTCTTAAAATCAAAGTCCATCACTTAAATAAGAAAAGTATCA
706 AAA-ATCTTT-TTTTCCCTATTTTTCTTAAAATCAAAGTTCATCCCTTAAATAAGAAAAGTATCG
*
403949 ATTCTCGTAACAGTCT
769 ATTCTCGTAATAGTCT
403965 CCATTCTTTTCAAGATT-GAGAACCAAATAAACATTCCCTTCATTAGGATACATGATATTGATGC
1 CCATTCTTTTCAAGATTAG-GAACCAAATAAACATTCCCTTCATTAGGATACATGATATTGATGC
* * *
404029 TTTGGTTTCACAAGAAAGACTTTCTCGTAAATTTTTGTAAAGTTTAAGTTTGTGCCTCAAATGAG
65 TTTGGTTTCACAAGAAAGACTTTCTCATAAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAG
* * * * **
404094 CCAAACATGGATTTTAGTAATAATCTTCAATCATTTTGTGGTTAGGCATTATGCACACATTTTCT
130 CCAAACATGGATTCTAGTAATGATCTTCAATCATTTTGTGATTAGGCACTATAAACACATTTTCT
* ** *
404159 TTATTAGGATAAAAGATGCTGATAATTTT-TTTTGCATGGAAATCTTTTCTTTGCCCAATTTTCC
195 TTATTAGGATAAATGATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCAATTTT-C
* * *
404223 ATAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATTGATTCTTATAATAGTCTCTATTCTTTT
259 TTAAAATCAAAGTTCATCCC-TAAATAAGACAAGCATCGATTCTCATAATAGTCTCTATTCTTTT
* * * * * *
404288 CAAGATTGGGAACCAAAAACA-AATTCCTTTCACTAGGATACATGACATTGATGTTTCGGGGTTG
323 CAACATTGGGAACAAAAAACACATTTCCTTT-ATTA-GATACATGACATTGATGCTTCGGGGTCG
**
404352 CAAGAAATGCTTTTCTTTCCACCGTACTTAATAGAATCAAATACTGTGTTTGTCTCTTAAATAAG
386 CAAGAAATGCTTTTCTTTCCACCGTTTTTAATAGAATC-AA-A----GTTTGTCTCTTAAATAAG
* * * *
404417 ACAAACATGAATTGTCATACTAATCCCCATTATTTTCAGTATTAGGCACCATAAACAAAGTGTTT
445 ACAAACATGAATAGTTATACTAATCCCCATTATTTTCAGTATTAGGCACCATAAACAAAGTCTTC
* * * * * * * * *
404482 TCATAAAGATACATGATATTGACGCTTTTGTTTTAAAAGAAAGGCTTTCTTTCCCCTAATTTTTG
510 TCATAAGGATACACGATATGGATGCTTTGGTTTTGAAAGAAAGGCATTC-TTCCCCCAAATTTTG
* * * * * *
404547 TAAAGTGTAAGTTCGTGCCTCAAATCAGTCAAACATGAATTCTACTAATGATCTTCACTCATTTT
574 TAAAGTTTAAGTTCGTGCCACAAATGAGTCAAACATGGATTCTAATAATGATCTTCATTCATTTT
* * *
404612 GTGATTAGGC-CTAATAAACACATTCTCCATATTAGGA-AAAGTGATACTGATGATTTTCTTTTG
639 GTGATTAGGCACT-ATAAACAAATTCTCC-TATTAGGATAAA-TGGTATTGATGATTTTCTTTTG
* * * * * **
404675 TA-GGAAAATCTTTTTTTGCCCTATATTCCTTAAAATCAAAGTTCTTCCCCTAAATAAGGCAAGT
701 CATGGAAAATCTTTTTTT-CCCTATTTTTCTTAAAATCAAAGTTCATCCCTTAAATAAGAAAAGT
*
404739 ATCGATTCTCATAATAGTCT
765 ATCGATTCTCGTAATAGTCT
* * * * ** * * * *
404759 CCTTTCTTTTTAAGATTAGGAGCGAAAGGAACATTCCCTTCATTAGAATACTTAACATTGATGCT
1 CCATTCTTTTCAAGATTAGGAACCAAATAAACATTCCCTTCATTAGGATACATGATATTGATGCT
404824 TTGGT
66 TTGGT
404829 GCTGCCAGAA
Statistics
Matches: 1406, Mismatches: 209, Indels: 75
0.83 0.12 0.04
Matches are distributed among these distances:
787 4 0.00
788 499 0.35
789 365 0.26
790 17 0.01
791 155 0.11
793 6 0.00
794 126 0.09
795 231 0.16
796 3 0.00
ACGTcount: A:0.32, C:0.17, G:0.14, T:0.37
Consensus pattern (784 bp):
CCATTCTTTTCAAGATTAGGAACCAAATAAACATTCCCTTCATTAGGATACATGATATTGATGCT
TTGGTTTCACAAGAAAGACTTTCTCATAAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGC
CAAACATGGATTCTAGTAATGATCTTCAATCATTTTGTGATTAGGCACTATAAACACATTTTCTT
TATTAGGATAAATGATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCAATTTTCTT
AAAATCAAAGTTCATCCCTAAATAAGACAAGCATCGATTCTCATAATAGTCTCTATTCTTTTCAA
CATTGGGAACAAAAAACACATTTCCTTTATTAGATACATGACATTGATGCTTCGGGGTCGCAAGA
AATGCTTTTCTTTCCACCGTTTTTAATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAA
TAGTTATACTAATCCCCATTATTTTCAGTATTAGGCACCATAAACAAAGTCTTCTCATAAGGATA
CACGATATGGATGCTTTGGTTTTGAAAGAAAGGCATTCTTCCCCCAAATTTTGTAAAGTTTAAGT
TCGTGCCACAAATGAGTCAAACATGGATTCTAATAATGATCTTCATTCATTTTGTGATTAGGCAC
TATAAACAAATTCTCCTATTAGGATAAATGGTATTGATGATTTTCTTTTGCATGGAAAATCTTTT
TTTCCCTATTTTTCTTAAAATCAAAGTTCATCCCTTAAATAAGAAAAGTATCGATTCTCGTAATA
GTCT
Found at i:404327 original size:313 final size:314
Alignment explanation
Indices: 403747--404340 Score: 775
Period size: 313 Copynumber: 1.9 Consensus size: 314
403737 TGCCTGCAAA
* * * *
403747 TTTTGTAAAGTTTAAGTTCGTGCCACAAATGAGTCAAACATGGATTCTAATAATGATCTTCATTT
1 TTTTGTAAAGTTTAAGTTCGTGCCACAAATGAGCCAAACATGGATTCTAATAATAATCTTCAATC
* *
403812 ATTTTGTGATTAGGCACTATAAACAAATTCTTCTCATTAGGATAAATGGTATTGTTGATATTCTA
66 ATTTTGTGATTAGGCACTATAAACAAATTCTTCTCATTAGGATAAATAGTATTGCTGATATTCTA
* * * *
403877 TTGCATGGAAATATTTTCTTTTCCCTATTTTTCTTAAAATCAAAGTCCATCACTTAAATAAGAAA
131 TTGCATGGAAATATTTTCTTTGCCCAATTTTCCATAAAATCAAAGTCCATCACTTAAATAAGAAA
* * *
403942 AGTATCAATTCTCGTAACAGTCTCCATTCTTTTCAAGATTGAGAACCAAATAAACATTCCCTTCA
196 AGCATCAATTCTCATAACAGTCTCCATTCTTTTCAAGATTGAGAACCAAATAAAAATTCCCTTCA
* *
404007 TTAGGATACATGATATTGATGCTTTGGTTTCACAAGAAAGACTTTCTCGTAAAT
261 CTAGGATACATGACATTGATGCTTTGGTTTCACAAGAAAGACTTTCTCGTAAAT
* * * *
404061 TTTTGTAAAGTTTAAGTTTGTGCCTCAAATGAGCCAAACATGGATTTTAGTAATAATCTTCAATC
1 TTTTGTAAAGTTTAAGTTCGTGCCACAAATGAGCCAAACATGGATTCTAATAATAATCTTCAATC
* * ** * *
404126 ATTTTGTGGTTAGGCATTATGCACACATT-TTCTTTATTAGGATAAA-AG-A-TGCTGATAATTT
66 ATTTTGTGATTAGGCACTATAAACAAATTCTTC-TCATTAGGATAAATAGTATTGCTGAT-A-TT
* * * * *
404187 TTTTTGCATGGAAATCTTTTCTTTGCCCAATTTTCCATAAAATCAAAGTTCATCCCTTAAATAAG
128 CTATTGCATGGAAATATTTTCTTTGCCCAATTTTCCATAAAATCAAAGTCCATCACTTAAATAAG
* ** * * * * *
404252 ACAAGCATTGATTCTTATAATAGTCTCTATTCTTTTCAAGATTGGGAACCAAA-AACAAATTCCT
193 AAAAGCATCAATTCTCATAACAGTCTCCATTCTTTTCAAGATTGAGAACCAAATAA-AAATTCCC
404316 TTCACTAGGATACATGACATTGATG
257 TTCACTAGGATACATGACATTGATG
404341 TTTCGGGGTT
Statistics
Matches: 238, Mismatches: 38, Indels: 9
0.84 0.13 0.03
Matches are distributed among these distances:
311 6 0.03
312 4 0.02
313 135 0.57
314 93 0.39
ACGTcount: A:0.33, C:0.16, G:0.13, T:0.38
Consensus pattern (314 bp):
TTTTGTAAAGTTTAAGTTCGTGCCACAAATGAGCCAAACATGGATTCTAATAATAATCTTCAATC
ATTTTGTGATTAGGCACTATAAACAAATTCTTCTCATTAGGATAAATAGTATTGCTGATATTCTA
TTGCATGGAAATATTTTCTTTGCCCAATTTTCCATAAAATCAAAGTCCATCACTTAAATAAGAAA
AGCATCAATTCTCATAACAGTCTCCATTCTTTTCAAGATTGAGAACCAAATAAAAATTCCCTTCA
CTAGGATACATGACATTGATGCTTTGGTTTCACAAGAAAGACTTTCTCGTAAAT
Found at i:405444 original size:476 final size:473
Alignment explanation
Indices: 404009--406339 Score: 2369
Period size: 476 Copynumber: 4.9 Consensus size: 473
403999 TCCCTTCATT
* * * ***
404009 AGGATACATGATATTGATGCTTTGGTTTCACAAGAAAGAC-TTTCT-CGTAAATTTTTGTAAAGT
1 AGGATACATGATATTGATGCTTTGGTTTTACAAGAAAGGCTTTTTTCCCCCAATTTTTGTAAAGT
* * * * * *
404072 TTAAGTTTGTGCCTCAAATGAGCCAAACATGGATTTTAGTAATAATCTTCAATCATTTTGTGGTT
66 CTAAGTTCGTGCCTCAAATGAGCCAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATT
** * * * * * *
404137 AGGCATTATGCACACATTTTCTTTATTAGGATAAAA-GATGCTGATAATTTT-TTTTGCATGGAA
131 AGGCA-TATAAACACATTCTCCTCACTAGGA-AAAATGATACTGATGATTTTCTTTTGCATGGAA
* * *
404200 ATCTTTTCTTTGCCCAATTTTCCATAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATTGATT
194 ATCTTTTCTTTGCCTAATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATT
* * * * *
404265 CTTATAATAGTCTCTATTCTTTTC-AAGATTGGGAACCAAAAACAAATTCCTTTCACTAGGATAC
259 C--CTAATAGTCTCCATTCTTTTCAAAGATTGGGAACCAAAAACACATTCCCTTCATTAGGATAC
* * * ** *
404329 ATGACATTGATG-TTTCGGGGTTGCAAGAAATGCTTTTCTTTCCACCGTACTTAATAGAATCAAA
322 ATGACATTGATGCTTT-GGGGTCGCAAGAAAAGCTTTTCTTTCCAACGTTTTTGATAGAATC-AA
* *
404393 TACTGTGTTTGTCTCTTAAATAAGACAAACATGAATTGTCATACTAATCCCCATTATTTTC-AGT
385 -A--GTG--TGTCTCTTAAATAAGACAAACATGAATAGTCATACTAATCCCCATTCTTTTCAAG-
* *
404457 ATTAGGCACCATAAACAAAGTGTT-TTCATA
444 ATTAGGCACCATAAACATAGTCTTCTT-ATA
* * * * *
404487 AAGATACATGATATTGACGCTTTTGTTTTAAAAGAAAGGCTTTCTTTCCCCTAATTTTTGTAAAG
1 AGGATACATGATATTGATGCTTTGGTTTTACAAGAAAGGCTTT-TTTCCCCCAATTTTTGTAAAG
* * * * * *
404552 TGTAAGTTCGTGCCTCAAATCAGTCAAACATGAATTCTACTAATGATCTTCACTCATTTTGTGAT
65 TCTAAGTTCGTGCCTCAAATGAGCCAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGAT
* * * *
404617 TAGGCCTAATAAACACATTCTCCAT-ATTAGGAAAAGTGATACTGATGATTTTCTTTTGTA-GGA
130 TAGGCAT-ATAAACACATTCTCC-TCACTAGGAAAAATGATACTGATGATTTTCTTTTGCATGG-
* * * * *
404680 AAATCTTTT-TTTGCCCT-ATATTCCTTAAAATCAAAGTTCTTCCCCTAAATAAGGCAAGTATCG
192 AAATCTTTTCTTTG-CCTAATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCG
* * * * * * *
404743 ATTCTCATAATAGTCTCCTTTCTTTT-TAAGATTAGGAGCGAAAGGA-ACATTCCCTTCATTAGA
256 ATTC-C-TAATAGTCTCCATTCTTTTCAAAGATTGGGAACCAAA-AACACATTCCCTTCATTAGG
* * * * * * *
404806 ATACTTAACATTGATGCTTTGGTG-CTGCCAGAAAAGCTTTGCTATCCAACGGTTTTGATAGAAT
318 ATACATGACATTGATGCTTTGGGGTC-GCAAGAAAAGCTTTTCTTTCCAACGTTTTTGATAGAAT
* * * * * *
404870 CAAAGTTTATCTCTTAAAAAAGACAAACATGAATACTCATGCTAATCCCCATTCCTTTCAAGATT
382 CAAAGTGTGTCTCTTAAATAAGACAAACATGAATAGTCATACTAATCCCCATTCTTTTCAAGATT
* *
404935 AGGAACCATAAACATAGTCTTCTTATT
447 AGGCACCATAAACATAGTCTTCTTATA
* ** *
404962 AGGATACATGATGTTGATGCTTTCATTTTACAAGAAAAGCTTTTTTCCCACCAATTTTTGTAAAG
1 AGGATACATGATATTGATGCTTTGGTTTTACAAGAAAGGCTTTTTTCCC-CCAATTTTTGTAAAG
* * * * *
405027 TTTAAGTTCATGCCTCAAATGAGCCAAACATGGATTCTAGCAATGATCTTCATTCATATAGTGAT
65 TCTAAGTTCGTGCCTCAAATGAGCCAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGAT
* * * *
405092 TAAGCACTTTAAACACATTCTCCTCACTAGGAAAAATGATATTGATTATTTTCTTTTGCATGGAA
130 TAGGCA-TATAAACACATTCTCCTCACTAGGAAAAATGATACTGATGATTTTCTTTTGCATGGAA
* * * * *
405157 ATCTTTTTTTTGCCTAATTTTCCTTAAAATCAAAGTTCAACCATTAAATAATACAAGCATCAATT
194 ATCTTTTCTTTGCCTAATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATT
* ** * * * * *
405222 CCTAGAGCAGTCTCCAAGCTTTTCAAAGCTTAGGAAACAAAAACACATTCCCTTCTTTAAGATAC
259 CCTA-A-TAGTCTCCATTCTTTTCAAAGATTGGGAACCAAAAACACATTCCCTTCATTAGGATAC
* * * *
405287 ATGACATTGATGCTTT-GTGTCGTAAGAAAAGCTTTTCTTTGCAACGTTTTTGTTAGAATCAAAG
322 ATGACATTGATGCTTTGGGGTCGCAAGAAAAGCTTTTCTTTCCAACGTTTTTGATAGAATCAAAG
* * *
405351 TGTGTCTCTTAAATAAGATAAACTTGAATAGTCATACTAATCCCCATTCTTTTCAGGATTAGGCA
387 TGTGTCTCTTAAATAAGACAAACATGAATAGTCATACTAATCCCCATTCTTTTCAAGATTAGGCA
* *
405416 CCATAAATATAGTGTTCTTATA
452 CCATAAACATAGTCTTCTTATA
* * * **
405438 AGGATACATGATATTGATGTTTTGGTTTCGA-AAGAAAGGCTTTTTTCCCCCCAATTTCTCAAAA
1 AGGATACATGATATTGATGCTTTGGTTT-TACAAGAAAGGCTTTTTT-CCCCCAATTTTTGTAAA
* * * * * * * *
405502 GCCTGAGTTTGTGCCTCAAATGAGCGAAACAAGTATTCTAGTAATGATCTTCGTTCATTTTGTCA
64 GTCTAAGTTCGTGCCTCAAATGAGCCAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGA
* * * ** * *
405567 TAAGGCATAATAAATACTTTCTCCTCACTAGGGTAAATGATACTAATGATTTTGTTTTGCATGGA
129 TTAGGCAT-ATAAACACATTCTCCTCACTAGGAAAAATGATACTGATGATTTTCTTTTGCATGGA
* * * *
405632 AATCATTTCTTTGCCCAATTTTCCTTAAAATCAAAGTGCATCCCTTAAATAAGACAAGCATTGAT
193 AATCTTTTCTTTGCCTAATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGAT
* * * * *
405697 TCTCGTAACCA-TCTCTGA-GCATTTCAAAGATTGGGAACCAAAAACACATTCCCTTCATGAGGA
258 TC-C-TAA-TAGTCTC-CATTCTTTTCAAAGATTGGGAACCAAAAACACATTCCCTTCATTAGGA
* * * * * *
405760 TACATGACATCGATGCTTTGGTGTCGCAAGAAAAGTTTTTCTTTACAATGTTTTTGATAGAATAA
319 TACATGACATTGATGCTTTGGGGTCGCAAGAAAAGCTTTTCTTTCCAACGTTTTTGATAGAATCA
* * *
405825 AAGTTTCTCTCTTAAATAAGACAAACATGAATACTCATACTAATCCCCATTCTTTTCAAGATTAG
384 AAGTGTGTCTCTTAAATAAGACAAACATGAATAGTCATACTAATCCCCATTCTTTTCAAGATTAG
* * ** *
405890 GCGCCATAAACATCGTCTTCAGATT
449 GCACCATAAACATAGTCTTCTTATA
* * * *
405915 AGGATACGTGATATTGATGCTTTGGTTTCACAAGAAATGCTTTTTTCTCGCCAATTTTTGTAAAG
1 AGGATACATGATATTGATGCTTTGGTTTTACAAGAAAGGCTTTTTTC-CCCCAATTTTTGTAAAG
* * * ** * *
405980 TCTAAGTTCATGCATCAAAT-AGGACAAACATGGATTCTAGTAACAATCTCCATGCATTTTGTGA
65 TCTAAGTTCGTGCCTCAAATGA-GCCAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGA
* ** * ** *
406044 TTAGGCAATACAAACACATTCTCCTCA-TTCGAATAAATAATGTTGATGATTTTCTTTTGCTTGG
129 TTAGGC-ATATAAACACATTCTCCTCACTAGGAA-AAATGATACTGATGATTTTCTTTTGCATGG
* * ** * *
406108 AAATATTTTCTTTGCCCT-ATTTTTCAAAAAATCAAAGTTCATTCCTTAAA-AGGACAAGCATCG
192 AAATCTTTTCTTTG-CCTAATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCG
* *
406171 ATTTTCATAATAGTCTCCATTCTTTT-GAAGATTGGGAACCAAAAACACATT-CCTTCATTAGGA
256 A--TTCCTAATAGTCTCCATTCTTTTCAAAGATTGGGAACCAAAAACACATTCCCTTCATTAGGA
* * * * *
406234 TATATGACATTGATGCTTTAGGGTCACAAGAAATA-TTTTTCTTTCC-ACAGATTTTGATAGAAT
319 TACATGACATTGATGCTTTGGGGTCGCAAGAAA-AGCTTTTCTTTCCAAC-GTTTTTGATAGAAT
*
406297 CAAAGT-TGGTCTCTTAAATAAGACAAACATTAATAGTCATACT
382 CAAAGTGT-GTCTCTTAAATAAGACAAACATGAATAGTCATACT
406340 TATTAGGATA
Statistics
Matches: 1526, Mismatches: 280, Indels: 98
0.80 0.15 0.05
Matches are distributed among these distances:
473 2 0.00
474 108 0.07
475 263 0.17
476 477 0.31
477 355 0.23
478 43 0.03
479 3 0.00
480 9 0.01
481 244 0.16
482 22 0.01
ACGTcount: A:0.32, C:0.18, G:0.14, T:0.36
Consensus pattern (473 bp):
AGGATACATGATATTGATGCTTTGGTTTTACAAGAAAGGCTTTTTTCCCCCAATTTTTGTAAAGT
CTAAGTTCGTGCCTCAAATGAGCCAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATT
AGGCATATAAACACATTCTCCTCACTAGGAAAAATGATACTGATGATTTTCTTTTGCATGGAAAT
CTTTTCTTTGCCTAATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCC
TAATAGTCTCCATTCTTTTCAAAGATTGGGAACCAAAAACACATTCCCTTCATTAGGATACATGA
CATTGATGCTTTGGGGTCGCAAGAAAAGCTTTTCTTTCCAACGTTTTTGATAGAATCAAAGTGTG
TCTCTTAAATAAGACAAACATGAATAGTCATACTAATCCCCATTCTTTTCAAGATTAGGCACCAT
AAACATAGTCTTCTTATA
Found at i:405885 original size:953 final size:944
Alignment explanation
Indices: 403965--406339 Score: 2648
Period size: 953 Copynumber: 2.5 Consensus size: 944
403955 GTAACAGTCT
*
403965 CCATTCTTTTCAAGATT-GAGAACCAAATAAACAT-TC-CCTTCATTAGGATACATGATATTGAT
1 CCATTCTTTTCAAGATTAG-GAACC--ATAAACATGTCTTCTT-ATTAGGATACATGATATTGAT
* ** **
404027 GCTTTGGTTTCACAAG-AAAGAC-TTTCTCGTA--AATTTTTGTAAAGTTTAAGTTTGTGCCTCA
62 GCTTTGGTTTCACAAGAAAAG-CTTTTTTCCCACCAATTTTTGTAAAGTTTAAGTTCATGCCTCA
* * * **
404088 AATGAGCCAAACATGGATTTTAGTAATAATCTTCAATCATTTTGTGGTTAGGCATTATGCACACA
126 AATGAGCCAAACATGGATTCTAGTAATAATCTTCATTCATTTTGTGATTAGGCATT-TAAACACA
* * * * *
404153 TTTTCTTTATTAGGATAAAA-GATGCTGATAATTTT-TTTTGCATGGAAATCTTTTCTTTGCCCA
190 TTCTCCTCA-TAGGA-AAAATGATGTTGATAATTTTCTTTTGCATGGAAATCTTTTCTTTGCCTA
** *
404216 ATTTTCCATAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATTGATTCTTATAATAGTCTCTA
253 ATTTTCCATAAAATCAAAGTTCAT-CCTTAAATAAGACAAGCATCAATTC--ATAATAGTCTCCA
* * *
404281 TTCTTTTCAAGATTGGGAACCAAAAACAAATTCCTTTCACTAGGATACATGACATTGATG-TTTC
315 TTCTTTTCAAGATTGGGAACCAAAAACACATTCCCTTCATTAGGATACATGACATTGATGCTTT-
* * * * ** *
404345 GGGGTTGCAAGAAATGCTTTTCTTTCCACCGTACTTAATAGAATCAAATACTGTGTTTGTCTCTT
379 AGGGTCGCAAGAAAAGCTTTTCTTT-CAACGTTTTTGATAGAATC-AA-A--GTG--TGTCTCTT
* * *
404410 AAATAAGACAAACATGAATTGTCATACTAATCCCCATTATTTTCAGTATTAGGCACCATAAACAA
437 AAATAAGACAAACTTGAATAGTCATACTAATCCCCATTATTTTCAGGATTAGGCACCATAAACAA
* *
404475 AGTGTTTTCATAAAGATACATGATATTGACGCTTTTGTTTTAAAAGAAAGGCTTTCTTTCCCCTA
502 AGTGTTTTCATAAAGATACATGATATTGACGCTTTTGTTTCAAAAGAAAGGCTTTCTTTCCCCCA
* ** ** *
404540 ATTTTTGTAAAGTGTAAGTTCGTGCCTCAAATCAGTCAAACATGAATTCTACTAATGATCTTCAC
567 ATTTCTCAAAAGCCTAAGTTCGTGCCTCAAATCAGTCAAACAAGAATTCTACTAATGATCTTCAC
* * * * *
404605 TCATTTTGTGATTAGGCCTAATAAACACATTCTCCATATTAGGAAAAGTGATACTGATGATTTTC
632 TCATTTTGTCATAAGGCATAATAAACACATTCTCCATACTAGGAAAAGTGATACTAATGATTTTC
* * * * * *
404670 TTTTGTAGGAAAATCTTTTTTTGCCCTATATTCCTTAAAATCAAAGTTCTTCCCCTAAATAAGGC
697 TTTTGCAGGAAAATCTTTCTTTGCCCAATATTCCTTAAAATCAAAGTGCATCCCCTAAATAAGAC
* * ** ** * * *
404735 AAGTATCGATTCTCATAATAGTCTCCTTTCTTTTTAAGATTAGGAGCGAAAGGAACATTCCCTTC
762 AAGCATCGATTCTCATAACAGTCTCCTAGCTTTCAAAGATTAGGAACCAAAGAAACATTCCCTTC
* * * * *
404800 ATTAGAATACTTAACATTGATGCTTTGGTGCTGCCAGAAAAGCTTTGCTATCCAACGGTTTTGAT
827 ATGAGAATACATAACATCGATGCTTTGGTGCTGCAAGAAAAGCTTTGCTATACAACGGTTTTGAT
* *
404865 AGAATCAAAGTTTATCTCTTAAAAAAGACAAACATGAATACTCATGCTAATCC
892 AGAATAAAAGTTTATCTCTTAAAAAAGACAAACATGAATACTCATACTAATCC
* *
404918 CCATTCCTTTCAAGATTAGGAACCATAAACATAGTCTTCTTATTAGGATACATGATGTTGATGCT
1 CCATTCTTTTCAAGATTAGGAACCATAAACAT-GTCTTCTTATTAGGATACATGATATTGATGCT
** *
404983 TTCATTTTACAAGAAAAGCTTTTTTCCCACCAATTTTTGTAAAGTTTAAGTTCATGCCTCAAATG
65 TTGGTTTCACAAGAAAAGCTTTTTTCCCACCAATTTTTGTAAAGTTTAAGTTCATGCCTCAAATG
* * * * *
405048 AGCCAAACATGGATTCTAGCAATGATCTTCATTCATATAGTGATTAAGCACTTTAAACACATTCT
130 AGCCAAACATGGATTCTAGTAATAATCTTCATTCATTTTGTGATTAGGCA-TTTAAACACATTCT
* * *
405113 CCTCACTAGGAAAAATGATATTGATTATTTTCTTTTGCATGGAAATCTTTTTTTTGCCTAATTTT
194 CCTCA-TAGGAAAAATGATGTTGATAATTTTCTTTTGCATGGAAATCTTTTCTTTGCCTAATTTT
* * * * * **
405178 CCTTAAAATCAAAGTTCAACCATTAAATAATACAAGCATCAATTCCTAGAGCAGTCTCCAAGCTT
258 CCATAAAATCAAAGTTCATCC-TTAAATAAGACAAGCATCAATTCATA-A-TAGTCTCCATTCTT
* * * * * *
405243 TTCAAAGCTTAGGAAACAAAAACACATTCCCTTCTTTAAGATACATGACATTGATGCTTT-GTGT
320 TTC-AAGATTGGGAACCAAAAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTAGGGT
* * *
405307 CGTAAGAAAAGCTTTTCTTTGCAACGTTTTTGTTAGAATCAAAGTGTGTCTCTTAAATAAGATAA
384 CGCAAGAAAAGCTTTTCTTT-CAACGTTTTTGATAGAATCAAAGTGTGTCTCTTAAATAAGACAA
* * *
405372 ACTTGAATAGTCATACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAATATAGTGTTCTT-A
448 ACTTGAATAGTCATACTAATCCCCATTATTTTCAGGATTAGGCACCATAAACAAAGTGTT-TTCA
* * *
405436 TAAGGATACATGATATTGATG-TTTTGGTTTCGAAAGAAAGGCTTT-TTTCCCCCCAATTTCTCA
512 TAAAGATACATGATATTGACGCTTTT-GTTTCAAAAGAAAGGCTTTCTTT-CCCCCAATTTCTCA
* * * * * **
405499 AAAGCCTGAGTTTGTGCCTCAAATGAG-CGAAACAAGTATTCTAGTAATGATCTTCGTTCATTTT
575 AAAGCCTAAGTTCGTGCCTCAAATCAGTC-AAACAAGAATTCTACTAATGATCTTCACTCATTTT
* * * *
405563 GTCATAAGGCATAATAAATACTTTCTCC-TCACTAGGGTAAA-TGATACTAATGATTTTGTTTTG
639 GTCATAAGGCATAATAAACACATTCTCCAT-ACTA-GGAAAAGTGATACTAATGATTTTCTTTTG
* *
405626 CATGG-AAATCATTTCTTTGCCCAATTTTCCTTAAAATCAAAGTGCATCCCTTAAATAAGACAAG
702 CA-GGAAAATC-TTTCTTTGCCCAATATTCCTTAAAATCAAAGTGCATCCCCTAAATAAGACAAG
* * *
405690 CATTGATTCTCGTAACCA-TCT-CTGAGCATTTCAAAGATTGGGAACCAAA-AACACATTCCCTT
765 CATCGATTCTCATAA-CAGTCTCCT-AGC-TTTCAAAGATTAGGAACCAAAGAA-ACATTCCCTT
* * * * * * *
405752 CATGAGGATACATGACATCGATGCTTTGGTG-TCGCAAGAAAAGTTTTTCTTTACAATGTTTTTG
826 CATGAGAATACATAACATCGATGCTTTGGTGCT-GCAAGAAAAGCTTTGCTATACAACGGTTTTG
* *
405816 ATAGAATAAAAGTTTCTCTCTTAAATAAGACAAACATGAATACTCATACTAATCC
890 ATAGAATAAAAGTTTATCTCTTAAAAAAGACAAACATGAATACTCATACTAATCC
** ** *
405871 CCATTCTTTTCAAGATTAGGCGCCATAAACATCGTCTTCAGATTAGGATACGTGATATTGATGCT
1 CCATTCTTTTCAAGATTAGGAACCATAAACAT-GTCTTCTTATTAGGATACATGATATTGATGCT
* * * * *
405936 TTGGTTTCACAAGAAATGCTTTTTTCTCGCCAATTTTTGTAAAGTCTAAGTTCATGCATCAAAT-
65 TTGGTTTCACAAGAAAAGCTTTTTTCCCACCAATTTTTGTAAAGTTTAAGTTCATGCCTCAAATG
* * * * **
406000 AGGACAAACATGGATTCTAGTAACAATCTCCATGCATTTTGTGATTAGGCAATACAAACACATTC
130 A-GCCAAACATGGATTCTAGTAATAATCTTCATTCATTTTGTGATTAGGC-ATTTAAACACATTC
** * * * *
406065 TCCTCATTCGAATAAATAATGTTGATGATTTTCTTTTGCTTGGAAATATTTTCTTTGCCCT-ATT
193 TCCTCATAGGAA-AAATGATGTTGATAATTTTCTTTTGCATGGAAATCTTTTCTTTG-CCTAATT
* * * *
406129 TTTCAAAAAATCAAAGTTCATTCCTTAAA-AGGACAAGCATCGATTTTCATAATAGTCTCCATTC
256 TTCCATAAAATCAAAGTTCA-TCCTTAAATAAGACAAGCATC-A-ATTCATAATAGTCTCCATTC
* *
406193 TTTTGAAGATTGGGAACCAAAAACACATT-CCTTCATTAGGATATATGACATTGATGCTTTAGGG
318 TTTTCAAGATTGGGAACCAAAAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTAGGG
* * * *
406257 TCACAAGAAATA-TTTTTCTTTCCACAGATTTTGATAGAATCAAAGT-TGGTCTCTTAAATAAGA
383 TCGCAAGAAA-AGCTTTTCTTTCAAC-GTTTTTGATAGAATCAAAGTGT-GTCTCTTAAATAAGA
406320 CAAACATT-AATAGTCATACT
445 CAAAC-TTGAATAGTCATACT
406340 TATTAGGATA
Statistics
Matches: 1192, Mismatches: 189, Indels: 84
0.81 0.13 0.06
Matches are distributed among these distances:
950 41 0.03
951 321 0.27
952 104 0.09
953 422 0.35
954 25 0.02
955 7 0.01
956 108 0.09
957 117 0.10
958 44 0.04
959 3 0.00
ACGTcount: A:0.32, C:0.18, G:0.14, T:0.36
Consensus pattern (944 bp):
CCATTCTTTTCAAGATTAGGAACCATAAACATGTCTTCTTATTAGGATACATGATATTGATGCTT
TGGTTTCACAAGAAAAGCTTTTTTCCCACCAATTTTTGTAAAGTTTAAGTTCATGCCTCAAATGA
GCCAAACATGGATTCTAGTAATAATCTTCATTCATTTTGTGATTAGGCATTTAAACACATTCTCC
TCATAGGAAAAATGATGTTGATAATTTTCTTTTGCATGGAAATCTTTTCTTTGCCTAATTTTCCA
TAAAATCAAAGTTCATCCTTAAATAAGACAAGCATCAATTCATAATAGTCTCCATTCTTTTCAAG
ATTGGGAACCAAAAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTAGGGTCGCAAGA
AAAGCTTTTCTTTCAACGTTTTTGATAGAATCAAAGTGTGTCTCTTAAATAAGACAAACTTGAAT
AGTCATACTAATCCCCATTATTTTCAGGATTAGGCACCATAAACAAAGTGTTTTCATAAAGATAC
ATGATATTGACGCTTTTGTTTCAAAAGAAAGGCTTTCTTTCCCCCAATTTCTCAAAAGCCTAAGT
TCGTGCCTCAAATCAGTCAAACAAGAATTCTACTAATGATCTTCACTCATTTTGTCATAAGGCAT
AATAAACACATTCTCCATACTAGGAAAAGTGATACTAATGATTTTCTTTTGCAGGAAAATCTTTC
TTTGCCCAATATTCCTTAAAATCAAAGTGCATCCCCTAAATAAGACAAGCATCGATTCTCATAAC
AGTCTCCTAGCTTTCAAAGATTAGGAACCAAAGAAACATTCCCTTCATGAGAATACATAACATCG
ATGCTTTGGTGCTGCAAGAAAAGCTTTGCTATACAACGGTTTTGATAGAATAAAAGTTTATCTCT
TAAAAAAGACAAACATGAATACTCATACTAATCC
Found at i:406584 original size:272 final size:270
Alignment explanation
Indices: 406087--406611 Score: 623
Period size: 272 Copynumber: 1.9 Consensus size: 270
406077 TAAATAATGT
* ** * * *
406087 TGATGATTTTCTTTTGCTTGGAAATATTTTCTTTGCCCTATTTTTCAAAAAATCAAAGTTCATTC
1 TGATGATTTTCTCTTGCAAGGAAATAATTTCTTTGCCCTATTTTCCAAAAAATCAAAGTTCATAC
* * * ** ** **
406152 CTTAAAAGGACAAGCATCGATTTTCATAATAGTCTCCATTCTTTTGAAGATTGGGAACCAAAAAC
66 CTTAAAAAGACAAGCATCGATTCTCATAACAGTCTCCAGCCTTTCAAAGATTAAGAACCAAAAAC
* * * *
406217 ACATTCCTTCATTAGGATATATGACATTGATGCTTTAGGGTCACAAGAAATATTTTTCTTTCCAC
131 ACATTCCTTCATTAGGATACATCACATTGACGCTTTAGGGTCACAAGAAATACTTTTCTTT-CAC
* * **
406282 AGATTTTGATAGAATCAAAGTTGGTCTCTTAAATAAGACAAACATTAATAGTCATACTTATTAGG
195 AGATTTTGATAAAATCAAAGTTGATCTCTTAAATAAGACAAACACGAATAGTCATACTTATTAGG
406347 ATAATTGATAC
260 ATAATTGATAC
* **
406358 TGATGATTTTCTCTTGCAAGGAAATAATTTCTTTGCTCTA-TTTCCTTAAAATCAAAGTTCA-AC
1 TGATGATTTTCTCTTGCAAGGAAATAATTTCTTTGCCCTATTTTCCAAAAAATCAAAGTTCATAC
*
406421 ACTTAAATAAGACAGGCATCGATTCTCATAACCA-TCTCCAAGCCTTTCAAAGATTAAGAACCAA
66 -CTTAAA-AAGACAAGCATCGATTCTCATAA-CAGTCTCC-AGCCTTTCAAAGATTAAGAACCAA
* *
406485 AAACAGATTCCCTTCATTAGGATACATCACATTGACGCTTT-GGCGTCGCAAGAAA-AGCTTTTC
127 AAACACATT-CCTTCATTAGGATACATCACATTGACGCTTTAGG-GTCACAAGAAATA-CTTTTC
** *
406548 TTGT-A-ATTTTTTTGATAAAATCAAAGTTTATCTCTTAAATAAGACAAACACGAATAGTCATAC
189 TT-TCACA-GATTTTGATAAAATCAAAGTTGATCTCTTAAATAAGACAAACACGAATAGTCATAC
406611 T
252 T
406612 AATCCCTATT
Statistics
Matches: 213, Mismatches: 32, Indels: 17
0.81 0.12 0.06
Matches are distributed among these distances:
269 1 0.00
270 24 0.11
271 61 0.29
272 81 0.38
273 45 0.21
274 1 0.00
ACGTcount: A:0.34, C:0.18, G:0.13, T:0.35
Consensus pattern (270 bp):
TGATGATTTTCTCTTGCAAGGAAATAATTTCTTTGCCCTATTTTCCAAAAAATCAAAGTTCATAC
CTTAAAAAGACAAGCATCGATTCTCATAACAGTCTCCAGCCTTTCAAAGATTAAGAACCAAAAAC
ACATTCCTTCATTAGGATACATCACATTGACGCTTTAGGGTCACAAGAAATACTTTTCTTTCACA
GATTTTGATAAAATCAAAGTTGATCTCTTAAATAAGACAAACACGAATAGTCATACTTATTAGGA
TAATTGATAC
Found at i:407083 original size:746 final size:745
Alignment explanation
Indices: 405595--407085 Score: 1923
Period size: 746 Copynumber: 2.0 Consensus size: 745
405585 TTCTCCTCAC
* * * * *
405595 TAGGGTAAATGATACTAATGATTTTGTTTTGCATGGAAATCATTTCTTTGCCCAATTTTCCTTAA
1 TAGGATAAATGATACTAATGATTTTCTCTTGCAAGGAAATAATTTCTTTGCCCAATTTTCCTTAA
* * * * **
405660 AATCAAAGTGCATCCCTTAAATAAGACAAGCATTGATTCTCGTAACCATCTCTGAGCATTTCAAA
66 AATCAAAGTGCAACACTTAAATAAGACAAGCATCGATTCTCATAACCATCTCCAAGCATTTCAAA
** * * *
405725 GATTGGGAACCAAAAACACATTCCCTTCATGAGGATACATGACATCGATGCTTTGGTGTCGCAAG
131 GATTAAGAACCAAAAACACATTCCCTTCATGAGGATACATCACATCGACGCTTTGGCGTCGCAAG
* * * *
405790 AAAAGTTTTTCTTTACAATGTTTTTGATAGAATAAAAGTTTCTCTCTTAAATAAGACAAACATGA
196 AAAAGCTTTTCTTTA-AATGTTTTTGATAAAATAAAAGTTTATCTCTTAAATAAGACAAACACGA
* * *
405855 ATACTCATACTAATCCCCATTCTTTTCAAGATTAGGCGCCATAAACATCGTCTTCAGATTAGGAT
260 ATACTCATACTAATCCCCATTCTTTTCAAGATTAGGCACCATAAACATAGTCTTCAGATAAGGAT
** * * * * *
405920 ACGTGATATTGATGCTTTGGTTTCACAAGAAATGCTTTTTTCTCGCCAATTTTTGTAAAGTCTAA
325 ACACGATATTGATGCTTTGGTTTCAAAAGAAAGGCTTTTTCCTCGCCAATTTTTGAAAAGCCTAA
405985 GTTCATGCATCAAATAGGACAAACATGGATTCTAGTAACAATCTCCATGCATTTTGTGATTAGGC
390 GTTCATGCATCAAATAGGACAAACATGGATTCTAGTAACAATCTCCATGCATTTTGTGATTAGGC
** * *
406050 AATACAAACACATTCTCCTCATTCGAATAAATAATGTTGATGATTTTCTTTTGCTTGGAAATATT
455 AATACAAACACATTCTCCTCATAAGAATAAATAATATTGATGATTTTCTTTTGCATGGAAATATT
* * * *
406115 TTCTTTGCCCTATTTTTCAAAAAATCAAAGTTCATTCCTTAAAAGGACAAGCATCGATTTTCATA
520 TTCTTTGCCCTATTCTT-AAAAAATCAAAGTGCATTCCTTAAAAAGACAAGCATCGATTCTCATA
** ** * * *
406180 ATAGTCTCCATTCTTTTGAAGATTGGGAACCAAAAACACATTCCTTCATTAGGATATATGACATT
584 ATAGTCTCCA-TAGTTCAAAGATTGGGAACAAAAAACACATTCCTTCATTAGGATACATAACATT
* *
406245 GATGCTTTAGGGTCACAAGAAATATTTTTCTTTCCACAGATTTTGATAGAATCAAAGTTGGTCTC
648 GATGCTTTAGGGTCACAAGAAATACTTTTCTTTCAACAGATTTTGATAGAATCAAAGTTGGTCTC
*
406310 TTAAATAAGACAAACATTAATAGTCATACTTAT
713 TTAAATAAGACAAACATGAATAGTCATACTTAT
* * * *
406343 TAGGATAATTGATACTGATGATTTTCTCTTGCAAGGAAATAATTTCTTTGCTCTA-TTTCCTTAA
1 TAGGATAAATGATACTAATGATTTTCTCTTGCAAGGAAATAATTTCTTTGCCCAATTTTCCTTAA
* * *
406407 AATCAAAGTTCAACACTTAAATAAGACAGGCATCGATTCTCATAACCATCTCCAAGCCTTTCAAA
66 AATCAAAGTGCAACACTTAAATAAGACAAGCATCGATTCTCATAACCATCTCCAAGCATTTCAAA
* * *
406472 GATTAAGAACCAAAAACAGATTCCCTTCATTAGGATACATCACATTGACGCTTTGGCGTCGCAAG
131 GATTAAGAACCAAAAACACATTCCCTTCATGAGGATACATCACATCGACGCTTTGGCGTCGCAAG
* *
406537 AAAAGCTTTTCTTGT-AATTTTTTTGATAAAATCAAAGTTTATCTCTTAAATAAGACAAACACGA
196 AAAAGCTTTTCTT-TAAATGTTTTTGATAAAATAAAAGTTTATCTCTTAAATAAGACAAACACGA
* * * **
406601 ATAGTCATACTAATCCCTATTCTTTTCAGGATTAGGCACCA-AAACCATAGTCTTCTTATAAGGA
260 ATACTCATACTAATCCCCATTCTTTTCAAGATTAGGCACCATAAA-CATAGTCTTCAGATAAGGA
*
406665 TACACGATATTGATGCTTTGGTTTCAAAAGAAAGGCTTTCTTCCTC-CCCATTTTTGAAAAGCCT
324 TACACGATATTGATGCTTTGGTTTCAAAAGAAAGGCTTT-TTCCTCGCCAATTTTTGAAAAGCCT
* * * * ** ** *
406729 AAGTTCGTGCCTC-AATTGAGCCAAACATGGATTCTAGTAATGATCTTTATTCATTTTGTGATTA
388 AAGTTCATGCATCAAATAG-GACAAACATGGATTCTAGTAACAATCTCCATGCATTTTGTGATTA
* ** * *
406793 GGCACTTTAAACACATTCTTCTCACTAAG-ATAAATGATATTGATGATTTTCTTTTGCATGGAAA
452 GGCAATACAAACACATTCTCCTCA-TAAGAATAAATAATATTGATGATTTTCTTTTGCATGGAAA
*
406857 TCA-TTTCTTTGCCCAGTATTCCTT-AAAAA-CAAAGTGCA-TCCATTAAATAAGACAAGCATGG
516 T-ATTTTCTTTGCCC--TATT-CTTAAAAAATCAAAGTGCATTCC-TTAAA-AAGACAAGCATCG
*
406918 ATTCTCGTAACT-GTCTCCA-AGTTCAAAGATTGGGAACAAAAAACACATTCTCTTCATTAGGAT
575 ATTCTCATAA-TAGTCTCCATAGTTCAAAGATTGGGAACAAAAAACACATTC-CTTCATTAGGAT
* * * *
406981 ACATAACGTTGATG-TTTTGGTGTCGCAAGAAA-AGCTTTTCTTTACAAC-GTTTTTGATAGAAT
638 ACATAACATTGATGCTTTAGG-GTCACAAGAAATA-CTTTTCTTT-CAACAGATTTTGATAGAAT
*
407043 CAAAGTTTGTCTCTTAAATAAGACAAACATGAATAGTCATACT
700 CAAAGTTGGTCTCTTAAATAAGACAAACATGAATAGTCATACT
407086 AATCCCTATT
Statistics
Matches: 640, Mismatches: 87, Indels: 34
0.84 0.11 0.04
Matches are distributed among these distances:
745 42 0.07
746 368 0.57
747 176 0.28
748 52 0.08
749 2 0.00
ACGTcount: A:0.33, C:0.18, G:0.14, T:0.34
Consensus pattern (745 bp):
TAGGATAAATGATACTAATGATTTTCTCTTGCAAGGAAATAATTTCTTTGCCCAATTTTCCTTAA
AATCAAAGTGCAACACTTAAATAAGACAAGCATCGATTCTCATAACCATCTCCAAGCATTTCAAA
GATTAAGAACCAAAAACACATTCCCTTCATGAGGATACATCACATCGACGCTTTGGCGTCGCAAG
AAAAGCTTTTCTTTAAATGTTTTTGATAAAATAAAAGTTTATCTCTTAAATAAGACAAACACGAA
TACTCATACTAATCCCCATTCTTTTCAAGATTAGGCACCATAAACATAGTCTTCAGATAAGGATA
CACGATATTGATGCTTTGGTTTCAAAAGAAAGGCTTTTTCCTCGCCAATTTTTGAAAAGCCTAAG
TTCATGCATCAAATAGGACAAACATGGATTCTAGTAACAATCTCCATGCATTTTGTGATTAGGCA
ATACAAACACATTCTCCTCATAAGAATAAATAATATTGATGATTTTCTTTTGCATGGAAATATTT
TCTTTGCCCTATTCTTAAAAAATCAAAGTGCATTCCTTAAAAAGACAAGCATCGATTCTCATAAT
AGTCTCCATAGTTCAAAGATTGGGAACAAAAAACACATTCCTTCATTAGGATACATAACATTGAT
GCTTTAGGGTCACAAGAAATACTTTTCTTTCAACAGATTTTGATAGAATCAAAGTTGGTCTCTTA
AATAAGACAAACATGAATAGTCATACTTAT
Found at i:408961 original size:474 final size:474
Alignment explanation
Indices: 406343--409724 Score: 3908
Period size: 476 Copynumber: 7.1 Consensus size: 474
406333 TCATACTTAT
* * * * * *
406343 TAGGATAATTGATACTGATGATTTTCTCTTGCAAGGAAATAATTTCTTTGCTCTA-TTTCCTTAA
1 TAGGATAAATGATATTGATGATTTTCTTTTGCATGGAAATCATTTCTTTGCCCTATTTTCCTTAA
* * * *
406407 AATCAAAGTTCAACACTTAAATAAGACAGGCATCGATTCTCATAACCA-TCTCCAAGCCTTTCAA
66 AATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCATAA-CAGTCTCCAAGCTTTTCAA
** * * * *
406471 AGATTAAGAACCAAAAACAGATTCCCTTCATTAGGATACATCACATTGACGCTTTGGCGTCGCAA
130 AGATTGGGAACCAAAAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAA
* * * * *
406536 GAAAAGCTTTTC-TTGTAATTTTTTTGATAAAATCAAAGTTTATCTCTTAAATAAGACAAACACG
195 GAAAAGCTTTTCTTTGCAAGTTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATG
*
406600 AATAGTCATACTAATCCCTATTCTTTTCAGGATTAGGCACCA-AAACCATAGTCTTCTTATAAGG
260 AATAGTCATACTAATCCC-ATTCTTTTCAGGATTAGGCACCATAAA-CATAGTCTTCTCATAAGG
* *
406664 ATACA-CGATATTGATGCTTTGGTTTCAAAAGAAAGGCTTTCTTCCTCCCC-ATTTTTGAAAAGC
323 ATACATC-ATATTGATGCTTTGGTTTCGAAAGAAAGGC-TT-TTCC-CCCCAATTTTTGAAAAGT
* *
406727 CTAAGTTCGTGCCTCAATTGAGCCAAACATGGATTCTAGTAATGATCTTTATTCATTTTGTGATT
384 CTAAGTTCGTGCCTCAAATGAGCCAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATT
406792 AGGCACTTTAAACACATTCTTCTCAC
449 AGGCACTTTAAACACATTCTTCTCAC
* *
406818 TAAGATAAATGATATTGATGATTTTCTTTTGCATGGAAATCATTTCTTTGCCC-AGTATTCCTTA
1 TAGGATAAATGATATTGATGATTTTCTTTTGCATGGAAATCATTTCTTTGCCCTA-TTTTCCTTA
* * * * * *
406882 AAAACAAAGTGCATCCATTAAATAAGACAAGCATGGATTCTCGTAACTGTCTCCAAG---TTCAA
65 AAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCATAACAGTCTCCAAGCTTTTCAA
* * * * *
406944 AGATTGGGAACAAAAAACACATTCTCTTCATTAGGATACATAACGTTGATGTTTTGGTGTCGCAA
130 AGATTGGGAACCAAAAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAA
*
407009 GAAAAGCTTTTCTTTACAACG-TTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACAT
195 GAAAAGCTTTTCTTTGCAA-GTTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACAT
* *
407073 GAATAGTCATACTAATCCCTATTCTTTTCAGGATTAGGCACCAGAAACATAGTCTTTTCATAAGG
259 GAATAGTCATACTAATCCC-ATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATAAGG
*
407138 ATACA-CAATATTGATGCCTTGGTTTCGAAAGAAAGG-TTTTCTTCCCCCTAATTTTTGAAAAG-
323 ATACATC-ATATTGATGCTTTGGTTTCGAAAGAAAGGCTTTTC--CCCCC-AATTTTTGAAAAGT
* * * * * * * *
407200 CATAAGTTCATGCTTCAATTGGGCCAAACATGGAGTCTAATAACGATATTCATTCATTTTGTGAT
384 C-TAAGTTCGTGCCTCAAATGAGCCAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGAT
*
407265 TAGGCACTTTAAACACATTATATTCATTCAC
448 TAGGCACTTTAAACACA-T-TCTTC--TCAC
* * *
407296 TAGGATAAAATTATATTGATAATTTTCTTTTGCATGGAAATCATTTCTTTGCCCAATTTTCCTTA
1 TAGGAT-AAATGATATTGATGATTTTCTTTTGCATGGAAATCATTTCTTTGCCCTATTTTCCTTA
* * ** *
407361 AAATCAAAGTGCATCCAC-TAAATAAGACAAGCACCGATTCTCGCAACCGTCTCCAAG---TTCA
65 AAATCAAAGTTCATCC-CTTAAATAAGACAAGCATCGATTCTCATAACAGTCTCCAAGCTTTTCA
* *
407422 AAGATTAGGAACCAAAAACACATTCCCTTCATTAGGATACATGACATTAATGCTTTGGTGTCGCA
129 AAGATTGGGAACCAAAAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCA
*
407487 AGAAAAGCTTTTCTTTGCAA-TGTTTTTGATAGAATCAAAGTTTATCTCTTAAATAAGACAAACA
194 AGAAAAGCTTTTCTTTGCAAGT-TTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACA
* * * * * *
407551 TAAATACTTATACTAATCCCCATTCTTTTCAAGATTAGGCACCATAAACATAGTCTT-TAGATTA
258 TGAATAGTCATACTAAT-CCCATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCT-CATAA
* * * * * *
407615 GGATACGTGATATTGATGCTTTAGTTTCGCAAGAAAGGCTTTTTTCCCACCAATTTTTGTAAAGT
321 GGATACATCATATTGATGCTTTGGTTTCGAAAGAAAGGC--TTTTCCCCCCAATTTTTGAAAAGT
* * * * * * ** * *
407680 CTAAGTTCATGCATCGAATGGGACAAGCATGGATTCTAGTAACAATCTCCATTCATTTTATGATT
384 CTAAGTTCGTGCCTCAAATGAGCCAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATT
* *
407745 AGGCA-TTATAAACACATTCTCCTCAT
449 AGGCACTT-TAAACACATTCTTCTCAC
* * * *
407771 TAGGATAAATGATGTTGATGATTTTCTTTTGCTTGGAAATCTTTTCTTTGCCCTATTTT-TTATA
1 TAGGATAAATGATATTGATGATTTTCTTTTGCATGGAAATCATTTCTTTGCCCTATTTTCCT-TA
* * * * **
407835 AAATCAAAGTTCATTCCTTAAACAAGACAACCATCGATTCTTATAACAGTCTCCACCCTTTTC-A
65 AAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCATAACAGTCTCCAAGCTTTTCAA
* * * *
407899 AGAATGCGAACCAAAAACACATTCCCTTCATTAGGATACATGACATTGATGGTTTGG-GTTTGCA
130 AGATTGGGAACCAAAAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTG-TCGCA
* * * * * * * * *
407963 GGAAATGCTTTTCTTTCCTTAG-ATTTTGACAGAATCAAAGTTAGCCTCTTAAATAAGACACACA
194 AGAAAAGCTTTTCTTTGC-AAGTTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACA
* * * * * * *
408027 TTAATAGTTATACTAATCCCTATTCTTTTTAGGATTAGGCACCAAAAACATAGTCATCTTATAAA
258 TGAATAGTCATACTAATCCC-ATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATAAG
** * * *
408092 GATACAAAACATTGATGCTTTGGTTTCGAGAA-AAAAGCTTTCTTCCCCCCAATTTTTGAGAAGT
322 GATACATCATATTGATGCTTTGGTTTCGA-AAGAAAGGC-TT-TTCCCCCCAATTTTTGAAAAGT
* * * * *
408156 CTAAGTCCGTGCCTCAAAAGAGCCAAACTTGGATTTTAG-AAGTAATCTTCATTCATTTTGTGAT
384 CTAAGTTCGTGCCTCAAATGAGCCAAACATGGATTCTAGTAA-TGATCTTCATTCATTTTGTGAT
*
408220 TAGGCACTTTAAACACATTCTCCTCAC
448 TAGGCACTTTAAACACATTCTTCTCAC
* * *
408247 TAGGATAAATGATATTGATGATTTTTTTTTTGCATGGAAATCATTTCTTTACCCTATTTTCCTTG
1 TAGGATAAATGATATTGATGA-TTTTCTTTTGCATGGAAATCATTTCTTTGCCCTATTTTCCTTA
* ** *
408312 AAATCAAAGTTCATCCCTTAATTAAGACAAGCATTAATTCTCGTAACAGTCTCCAAGCTTTTCAA
65 AAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCATAACAGTCTCCAAGCTTTTCAA
* *
408377 AGATTGGGAACCAAAAACACATTCCTTTCATTAGGATACATGACATTGATGCTTTGGAGTCAG-A
130 AGATTGGGAACCAAAAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTC-GCA
* * *
408441 AGAAAAGCTTTTCTTTGTAA-TGTTTTTGTTACAATCAAAGTTTGTCTCTTAAATAAGACAAACA
194 AGAAAAGCTTTTCTTTGCAAGT-TTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACA
* * * * * *
408505 TGAATACTCACATTAATCCTCATTCTTTTCAGGATTAGGCAACATAAATATAGTTTTCTCA-ATA
258 TGAATAGTCATACTAATCC-CATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATA-A
** * * * * *
408569 GGATACATCATATTGATGCTTTGGTTTCGTTAGAAAGGC-ATTACCACTAATTTCTGAAAAGTCT
321 GGATACATCATATTGATGCTTTGGTTTCGAAAGAAAGGCTTTTCCCCCCAATTTTTGAAAAGTCT
* * *
408633 AAGTTCGTGCCTCAAATGAGACAAACATTGATTCT-GCTAATGATCTTCATTTATTTTGTGATTA
386 AAGTTCGTGCCTCAAATGAGCCAAACATGGATTCTAG-TAATGATCTTCATTCATTTTGTGATTA
* * *
408697 AGCACTATAAACACATTCTTCTCAT
450 GGCACTTTAAACACATTCTTCTCAC
* * *
408722 TAGGATAAATGATATTAATGATTTTCTTTTGCATCGAAATCTTTTCTTTGCCCTATTTTCCTTAA
1 TAGGATAAATGATATTGATGATTTTCTTTTGCATGGAAATCATTTCTTTGCCCTATTTTCCTTAA
* **
408787 AATCAAAGTTCATCCCTTAAATAAGATAAGCATCGATTCTCATAACAGTCTCCATTCTTTTC-AA
66 AATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCATAACAGTCTCCAAGCTTTTCAAA
** * * * * * * * *
408851 GATTGGGAATAAAAAATAGC-TTCTCTTCATT-GGTATAGACGATATTTAAGTTTTGGTGTCGCA
131 GATTGGGAACCAAAAACA-CATTCCCTTCATTAGG-ATACATGACATTGATGCTTTGGTGTCGCA
* * * *
408914 AGAAATGCTTTTCTTTCCACAGTTTTTTGATAAAATCAAACTTTGTCTCTTAAATAAGACAAACA
194 AGAAAAGCTTTTCTTTGCA-AGTTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACA
* * * *
408979 AGAATAGTTATACTAAACCCCATTCTTTTCAGGATTAGGCATCATAAACATAGTCTTCTCATAAG
258 TGAATAGTCATACT-AATCCCATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATAAG
** * * * *
409044 GATACAAGATATTAATGCTTTGGTTTTGAATGAAAGGCTTTCTTCCCCCCAATTTTTGATAAGTC
322 GATACATCATATTGATGCTTTGGTTTCGAAAGAAAGGC-TT-TTCCCCCCAATTTTTGAAAAGTC
* * * * *
409109 TAAGTTCTTGTCTCAATTGAGCCAAACATTGATTCTAGTGATGATCTTCATTCATTTTGTGATTA
385 TAAGTTCGTGCCTCAAATGAGCCAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTA
*
409174 GGCACTTTAAACACATT-TTCCTTAC
450 GGCACTTTAAACACATTCTT-CTCAC
409199 TAGGATAAATGATATTGATGATTTTCTTTTGCATGGAAATCATTTCTTTG-CCTAATTTTCCTTA
1 TAGGATAAATGATATTGATGATTTTCTTTTGCATGGAAATCATTTCTTTGCCCT-ATTTTCCTTA
* * * * *
409263 AAATCAAAGTTCAACCCTTAAATAAGACAAGCATCGATTTTCAGAATAGTCTTCAAGCTTTTCAA
65 AAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCATAACAGTCTCCAAGCTTTTCAA
* * * *
409328 AGATTGGGAACCAAAATCACATTCCCTTCTTTAAGATACATGACATTGATGCTTTGGTGTCGTAA
130 AGATTGGGAACCAAAAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAA
* *
409393 GAAAAGCTTCTCTTTGCAACG-TTTTTGTTAGAATCAAAG-TTGTCTCTTAAATAAGACAAACAT
195 GAAAAGCTTTTCTTTGCAA-GTTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACAT
* * *
409456 GAATAGTCATACTAATCCCCAATCTTCTCAAGATTAGGCACCATAAACATAGTCTTCTCATAAGG
259 GAATAGTCATACTAAT-CCCATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATAAGG
* * * * * *
409521 ATACATGATATTGATGCTTTGGTTTCGTAAGAAAGGCTTTTTTCACACTAATTTTTGTAAAGTCT
323 ATACATCATATTGATGCTTTGGTTTCGAAAGAAAGGC--TTTTCCCCCCAATTTTTGAAAAGTCT
* ** ** * * * *
409586 AAGTTTGTGCCTCAAATGAGATAAGGATGGACTCTAGTAATGACCTTTATTCATTTTGTAATTAG
386 AAGTTCGTGCCTCAAATGAGCCAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAG
* * * *
409651 GCACTATAATCACATTCTTCTTAT
451 GCACTTTAAACACATTCTTCTCAC
* * * * * *
409675 TTGGACAAATGATATTGATGATTTTCATTTGCGTGAAAATAATTTCTTTG
1 TAGGATAAATGATATTGATGATTTTCTTTTGCATGGAAATCATTTCTTTG
409725 TACCATTTTT
Statistics
Matches: 2467, Mismatches: 366, Indels: 147
0.83 0.12 0.05
Matches are distributed among these distances:
471 3 0.00
472 9 0.00
473 138 0.06
474 530 0.21
475 188 0.08
476 603 0.24
477 330 0.13
478 262 0.11
479 390 0.16
480 9 0.00
482 5 0.00
ACGTcount: A:0.32, C:0.18, G:0.14, T:0.36
Consensus pattern (474 bp):
TAGGATAAATGATATTGATGATTTTCTTTTGCATGGAAATCATTTCTTTGCCCTATTTTCCTTAA
AATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCATAACAGTCTCCAAGCTTTTCAAA
GATTGGGAACCAAAAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAG
AAAAGCTTTTCTTTGCAAGTTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGA
ATAGTCATACTAATCCCATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATAAGGATA
CATCATATTGATGCTTTGGTTTCGAAAGAAAGGCTTTTCCCCCCAATTTTTGAAAAGTCTAAGTT
CGTGCCTCAAATGAGCCAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACT
TTAAACACATTCTTCTCAC
Found at i:411711 original size:158 final size:155
Alignment explanation
Indices: 411073--411713 Score: 424
Period size: 158 Copynumber: 4.0 Consensus size: 155
411063 CTTTGCATCG
** *
411073 TTTTTGTTAAAATCAAAG-TCTGTCTATTAAATAAGAAAAACATGAATGCTCATACTAATCCCTA
1 TTTTTGTTAAAATCAAAGTTC-GTCCCTTAAATAAGATAAACATGAATGCTCATACTAATCCC-A
* * * * * *
411137 TTCTTTTCAGGATTAGCCACCATAAACATACTCTTCTTATTAGAATACATGATATTGATGCTTTG
64 TTCTTTTCAAGATTAGGCACAATAAACAT-TTCTTCTCATTAGGATACATGATATTGATGCTTT-
* *
411202 GTTTTGCAAGAAACG-TGTTTTTCCCACCAA
127 GTTTTGCAAGAAAAGCT-TCTTT-CCACCAA
* * * * * * * * * * *
411232 TTTTTGTT-AAGTCTAAGTTCG-CGCCTCAAATGAGACAAACATGGATTCTAATAATGATCTTCA
1 TTTTTGTTAAAATCAAAGTTCGTC-CCTTAAATAAGATAAACATGAATGCTCATACTAATC-CCA
** * * * *
411295 TTCATTTT-GTGATTAGGCACTATAAACACTTTCTCCTCATTAGGATAAATGATATTGATGATTT
64 TTC-TTTTCAAGATTAGGCACAATAAACA-TTTCTTCTCATTAGGATACATGATATTGATGCTTT
* * * * *
411359 TTTTTGCATGAAAATCTCTTCTTTGC-CCTA
127 GTTTTGCAAGAAAA--GCTTCTTTCCACCAA
** * * * * *
411389 TTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGATAACCATCG-ATTCTCGTAAC-AGTCACC
1 TTTTTGTTAAAATCAAAGTTCGTCCCTTAAATAAGATAAACAT-GAATGCTCAT-ACTAATC-CC
** * * ** * * *
411452 AACCTTTTCAAAGATTGGGAACCGAA-AACACATACCTT-TCAATAAGATACATGACATTGATGC
63 ATTCTTTTC-AAGATTAGGCA-C-AATAA-ACATTTCTTCTCATTAGGATACATGATATTGATGC
* * * * *
411515 TTTATTGTTGCAAAAAAAGCTTTTCTTTTCAAC-G
124 TTTGTT-TTGCAAGAAAAGC--TTCTTTCCACCAA
* *
411549 TTTTTGTTAAAATCCAAGTT-GTCTCTTAAATAAGATAAACATGAATGCTCATACTAATCCTCAT
1 TTTTTGTTAAAATCAAAGTTCGTCCCTTAAATAAGATAAACATGAATGCTCATACTAATCC-CAT
* * *
411613 TCTTTTCAAGATTTGGCACAATAAACATTGTCTTCTCATTTGGATACATGATATTAATGCTTTGG
65 TCTTTTCAAGATTAGGCACAATAAACATT-TCTTCTCATTAGGATACATGATATTGATGCTTT-G
*
411678 TTTCGCAAGAAAAGCTTCTTTCCCACCAA
128 TTTTGCAAGAAAAGCTTCTTT-CCACCAA
411707 TTTTTGT
1 TTTTTGT
411714 ACAGTCTAAG
Statistics
Matches: 358, Mismatches: 94, Indels: 61
0.70 0.18 0.12
Matches are distributed among these distances:
156 12 0.03
157 34 0.09
158 174 0.49
159 93 0.26
160 40 0.11
161 5 0.01
ACGTcount: A:0.32, C:0.19, G:0.12, T:0.37
Consensus pattern (155 bp):
TTTTTGTTAAAATCAAAGTTCGTCCCTTAAATAAGATAAACATGAATGCTCATACTAATCCCATT
CTTTTCAAGATTAGGCACAATAAACATTTCTTCTCATTAGGATACATGATATTGATGCTTTGTTT
TGCAAGAAAAGCTTCTTTCCACCAA
Found at i:412210 original size:476 final size:472
Alignment explanation
Indices: 410685--413548 Score: 2318
Period size: 475 Copynumber: 5.9 Consensus size: 472
410675 TAAATAAGAC
* * * * * * *
410685 AAACATAGTCTT-CTCATAAGGATACAAGATATTTATGTTTTGGTTTTGAAAAAAAGGCTTTTTT
1 AAACATAGTCTTCCT-ATTAGGATACATGATATTGATGCTTTGGTTTCGCAAGAAAGG-TTTTTT
* ** * * *
410749 CTCC-CCAACTTTTGAAAAGTCTAAGTTCGTGCCTCAAATGAGCCAAACACGAATTCTAGTAATG
64 C-CCACCAATTTTTTTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATG
* * * * **
410813 ATCTTCATTTATTTTGTGATTTGGCACTTTAAAGAA-ATTCTCCTTATTAGGATAAATAATACCG
128 ATCTTCATTCATTTTGTGATTAGGCACTATAAA-AACATTCTCCTTATTAGGATAAATGATATTG
* *
410877 ATGATTTTTTTTGCTTGGAAATCATTTT-TTTGCCCTATTTTCCAT-AAACCAAAGTTCATCCCT
192 ATGATTTTTTTTGCTTGGAAATC-TTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCT
* * * ** *
410940 TAAATATGACAAGCATCGATTCTTGTAATAGTCTCCAAGCTTTTCTTAGATTAAGAACCAAAAAC
256 TAAATA-AACAAGCATCGATTCTCGTAATAGTCTCCAACCTTTTCAAAGATTAGGAACCAAAAAC
* * * *
411005 ACA-TCTCCTTAATTAGGATACATGCCATTGATGCTTTGGTGTCGCAAGAAAAATTTTTCTTTGC
320 ACATTCT-CTTTATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAGA-TTTTCTTTTC
* *
411069 A-TCGTTTTTGTTAAAATCAAAGTCTGTCTATTAAATAAGAAAAACATGAATGCTCATACTAATC
383 ACT-GTTTTTGTTAAAATCAAAGTTTGTCTCTTAAATAAGAAAAACATGAATGCTCATACTAATC
411133 CCTATTCTTTTCAGGATTAGCCACCAT
447 CCTATTCTTTTCAGGATTAG-CACCAT
* * * * *
411160 AAACATACTCTTCTTATTAGAATACATGATATTGATGCTTTGGTTTTGCAAGAAACGTGTTTTTC
1 AAACATAGTCTTCCTATTAGGATACATGATATTGATGCTTTGGTTTCGCAAGAAAGGT-TTTTTC
* *
411225 CCACCAATTTTTGTT-AAGTCTAAGTTCGCGCCTCAAATGAGACAAACATGGATTCTAATAATGA
65 CCACCAATTTTT-TTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGA
* * *
411289 TCTTCATTCATTTTGTGATTAGGCACTATAAACACTTTCTCCTCATTAGGATAAATGATATTGAT
129 TCTTCATTCATTTTGTGATTAGGCACTATAAAAACATTCTCCTTATTAGGATAAATGATATTGAT
* * *
411354 GATTTTTTTTGCATGAAAATCTCTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAA
194 GATTTTTTTTGCTTGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAA
* * * * * *
411419 ATAAGATAACCATCGATTCTCGTAACAGTCACCAACCTTTTCAAAGATTGGGAACCGAAAACACA
259 ATAA-ACAAGCATCGATTCTCGTAATAGTCTCCAACCTTTTCAAAGATTAGGAACCAAAAACACA
* * * ** * * *
411484 TAC-CTTTCAATAAGATACATGACATTGATGCTTTATTGTTGCAAAAAAAGCTTTTCTTTTCAAC
323 TTCTCTTT-ATTAGGATACATGACATTGATGCTTTGGTGTCGC-AAGAAAGATTTTCTTTTC-AC
* *
411548 -GTTTTTGTTAAAATCCAAG-TTGTCTCTTAAATAAGATAAACATGAATGCTCATACTAAT-CCT
385 TGTTTTTGTTAAAATCAAAGTTTGTCTCTTAAATAAGAAAAACATGAATGCTCATACTAATCCCT
* * *
411610 CATTCTTTTCAAGATTTGGCACAAT
450 -ATTCTTTTCAGGA-TTAGCACCAT
* * * * *
411635 AAACATTGTCTT-CTCATTTGGATACATGATATTAATGCTTTGGTTTCGCAAGAAAAGCTTCTTT
1 AAACATAGTCTTCCT-ATTAGGATACATGATATTGATGCTTTGGTTTCGCAAG-AAAGGTTTTTT
* * * * * *
411699 CCCACCAATTTTTGTACAGTCTAAGTTCATGCCTCAAATGTGACAAACATGGATTCCAGTATTGA
64 CCCACCAATTTTTTTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGA
* * *
411764 TATTCATTCATTTTGTGATTAGGCACTATAAAAACATTCTCCTTACTAGGATAAATGATATTGTT
129 TCTTCATTCATTTTGTGATTAGGCACTATAAAAACATTCTCCTTATTAGGATAAATGATATTGAT
* * **
411829 GATTTTCTTTTTCTTGGAAATCTTTTCTTTGCCTTATTTTCCTTAAAATCAAAGTTTTTCCCTTA
194 GATTTT-TTTTGCTTGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTA
* * * * *
411894 AATTAAAGAAGCATTGATTCTCGCAATAGTCTCCAATCTTTTCAAAGATTAGGAACCAAAAACAT
258 AA-TAAACAAGCATCGATTCTCGTAATAGTCTCCAACCTTTTCAAAGATTAGGAACCAAAAACAC
* *
411959 ATTCTCTTTATTAGGATACAAGACATTGATGCTTTGGGGTCGCAAGAAATGATTTTCTTTTCACT
322 ATTCTCTTTATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAA-GATTTTCTTTTCACT
* ** * * * *
412024 GGTTTTAATAGAATCAAAGTTTGTCTCGTAAATAAGACAACCAAT-AATAG-TCATACTAATCCC
386 GTTTTTGTTAAAATCAAAGTTTGTCTCTTAAATAAGAAAAAC-ATGAAT-GCTCATACTAATCCC
* *
412087 TATTCTTTTTAGGATTACGCACCGT
449 TATTCTTTTCAGGATTA-GCACCAT
** * *
412112 AAACATAGTCTTCCTATTAGGATACATGATATTGACACTTTGGTTTCACCAGAAAGGTTTTTTCC
1 AAACATAGTCTTCCTATTAGGATACATGATATTGATGCTTTGGTTTCGCAAGAAAGGTTTTTTCC
* * * ** *
412177 CTCAAATTTTTTTAAAGTCTATGTTTTTGCCTCAAGTGAGACAAACATGGATTCTAGTAATGATT
66 CACCAATTTTTTTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGA-T
* ** * * *
412242 AGGCATTATAAACACATTCTACTTATTTTTTGCCTATT-TTC-CT-TAAAATCAAAGTT-T-GTG
130 ---C--T-T-----CA-T-T-C--ATTTTGTG---ATTAGGCACTATAAAA--ACA-TTCTCCTT
** * * * * ** * *
412302 ATTAGGCATTATAAACACATT-CT-ACTTATTAGGATAAAT-GATATTGATGATTTTCTTTTGTA
173 ATTAGG-A-TA-AATGATATTGATGATTTTTTTTGCT---TGGA-A---AT-CTTTTCTT-----
* *
412364 TGGAAATCTTTTTTTTTGCCTATTTTCCTTAAAATCAAAGTTCATCCCATAAATAAAACAAGCGT
222 T-G----C----------CCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAAT-AAACAAGCAT
* * * * ** * * *
412429 TGATTCTCGCAACAGTCACCAATATTTTCCAAGATTGGGAACTAAAAACACATTC-CTTTCATTA
271 CGATTCTCGTAATAGTCTCCAACCTTTTCAAAGATTAGGAACCAAAAACACATTCTCTTT-ATTA
* ** * * * * ** *
412493 GGATACTTGACATTGATGCTTTGGTGTCATAGAAAAAGCTTTACTTTCCAAAGTTTTTGTTAGAA
335 GGATACATGACATTGATGCTTTGGTGTCGCA-AGAAAGATTTTCTTTTCACTGTTTTTGTTAAAA
* * *
412558 TCAAAGTTTATCAT-TTAAATAAGACAAACATGAATACTCATACTAATGCCC-ATTCTTTTCAAG
399 TCAAAGTTTGTC-TCTTAAATAAGAAAAACATGAATGCTCATACTAAT-CCCTATTCTTTTC-AG
*
412621 G-TTAGGCACCGT
461 GATTA-GCACCAT
* *
412633 -AACATATTCTT-CTCATTAGGATACATAATATTGATGCTTTGGTTTCGCAAGAAAGGCTTTTTT
1 AAACATAGTCTTCCT-ATTAGGATACATGATATTGATGCTTTGGTTTCGCAAGAAAGG-TTTTTT
* * * * *
412696 CCCACCAATTTTTGTAATGTTTAAGTTCGTGCCTC-AATGAGACAAATATGGATTTTAGTAATGA
64 CCCACCAATTTTTTTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGA
* * * * * * * *
412760 TCGTCATTCATTTTGTGATTTGTCACTATAAACACATTGTTCTCATTAGAATAAATGATATTGAT
129 TCTTCATTCATTTTGTGATTAGGCACTATAAAAACATTCTCCTTATTAGGATAAATGATATTGAT
* * * * * *
412825 --TTTTTTTTGCATGGAAATCTTTTCTTTGCTCTACTTTCCTTGAAATCAATGTTTATCCCTTAA
194 GATTTTTTTTGCTTGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAA
* * * * * ** * * *
412888 ATAAGATAAGTATTGATTCTCGTAATAGCCTTCATTCTTTT-TAAGATTGGGAACCAAAAACATA
259 ATAA-ACAAGCATCGATTCTCGTAATAGTCTCCAACCTTTTCAAAGATTAGGAACCAAAAACACA
* ** * * * * * * * * *
412952 TTATGATCATTTGGATAAATGACATTGCTACTTTGG-GGCTGCAAGAAATGCTTTTCTTTCCACC
323 TTCTCTTTATTAGGATACATGACATTGATGCTTTGGTGTC-GCAAGAAA-GATTTTCTTTTCACT
* * * ** * * * *
413016 ATTTTTG-AAAGAAACAAAGCCTATCTCTCAAATAAGACAAACATGATTAG-TCATACTAATCCC
386 GTTTTTGTTAA-AATCAAAGTTTGTCTCTTAAATAAGAAAAACATGAAT-GCTCATACTAATCCC
* * *
413079 CATTATTTTTAGGATTAGGCACCAT
449 TATTCTTTTCAGGATTA-GCACCAT
** * * * * *
413104 AAATGTAGTCTT-CTCATAAGGATGCAGGATATTGATGCTTTGGTTTCGAAAGAAAGGCTTTCTT
1 AAACATAGTCTTCCT-ATTAGGATACATGATATTGATGCTTTGGTTTCGCAAGAAAGG-TTTTTT
* ** * * ** *
413168 CCC-CTTAATTTTTGAAAAGTCTAAGTTCGTACCTCAAATGAGCCAAACACAGATTCTAGTAACG
64 CCCAC-CAATTTTTTTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATG
* * * * *
413232 ATCTTCATTCATTTTGTGATTAGGCACTTTAAACATATTCTCCTCATTAGGATAAATGATACT-A
128 ATCTTCATTCATTTTGTGATTAGGCACTATAAAAACATTCTCCTTATTAGGATAAATGATATTGA
* * *
413296 GTGATTTTCTTTTGCTTGGAAATCATTGCTTT-CCATATTTTCCTTAAAATCAAAGTTCATCCCT
193 -TGATTTT-TTTTGCTTGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCT
* * * * *
413360 TAAATAAGACAAGCTTCGATTCTTGTAATAGTCTCCAAGCTTTTCAAAGAATGGGAACCAAAAAC
256 TAAATAA-ACAAGCATCGATTCTCGTAATAGTCTCCAACCTTTTCAAAGATTAGGAACCAAAAAC
* * * * * *
413425 ACATTCTCTTTATTAAGATACATGACGTTGATGCTTTAGTGTCGCATGAAAAGCTTTTCTTTGCA
320 ACATTCTCTTTATTAGGATACATGACATTGATGCTTTGGTGTCGCAAG-AAAGATTTTCTTTTC-
** * * *
413490 AC-ACTTTTGTTAAAATCAAAGTTTGTGTCTTAAATATGACAAACATGAATGCTCATACT
383 ACTGTTTTTGTTAAAATCAAAGTTTGTCTCTTAAATAAGAAAAACATGAATGCTCATACT
413549 GATGAAAACC
Statistics
Matches: 1911, Mismatches: 356, Indels: 243
0.76 0.14 0.10
Matches are distributed among these distances:
470 14 0.01
471 124 0.06
472 140 0.07
473 77 0.04
474 12 0.01
475 489 0.26
476 479 0.25
477 114 0.06
478 8 0.00
482 2 0.00
483 1 0.00
486 1 0.00
487 1 0.00
488 2 0.00
489 1 0.00
490 1 0.00
491 1 0.00
492 7 0.00
493 14 0.01
494 11 0.01
495 8 0.00
496 12 0.01
497 10 0.01
499 11 0.01
500 10 0.01
501 13 0.01
502 8 0.00
503 11 0.01
505 1 0.00
506 2 0.00
507 2 0.00
508 2 0.00
511 1 0.00
513 1 0.00
516 1 0.00
519 3 0.00
520 80 0.04
521 225 0.12
522 11 0.01
ACGTcount: A:0.32, C:0.18, G:0.14, T:0.37
Consensus pattern (472 bp):
AAACATAGTCTTCCTATTAGGATACATGATATTGATGCTTTGGTTTCGCAAGAAAGGTTTTTTCC
CACCAATTTTTTTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATC
TTCATTCATTTTGTGATTAGGCACTATAAAAACATTCTCCTTATTAGGATAAATGATATTGATGA
TTTTTTTTGCTTGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAAT
AAACAAGCATCGATTCTCGTAATAGTCTCCAACCTTTTCAAAGATTAGGAACCAAAAACACATTC
TCTTTATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAGATTTTCTTTTCACTGTTTT
TGTTAAAATCAAAGTTTGTCTCTTAAATAAGAAAAACATGAATGCTCATACTAATCCCTATTCTT
TTCAGGATTAGCACCAT
Found at i:415899 original size:477 final size:471
Alignment explanation
Indices: 414430--416160 Score: 1778
Period size: 477 Copynumber: 3.7 Consensus size: 471
414420 ATTTGGCACT
* * * **
414430 ATAAATTATATGGATGATTTTCTTTTGCATCG-AATCATTTCTTTGGCCTATTTTCCTTAAAATC
1 ATAAATGATATTGATGATTTTCTTTTGCATGGAAATC-TTTC---ACCCTATTTTCCTTAAAATC
* * * * * *
414494 -AAGTTTATCTTTTAAATAAAACAAGCATCGATTCTTATAATAGTCTCCAAGCTTTTCAAAGATT
62 AAAGTTCATCTCTTAAATAAGACAAACATCGATTCTCATAACAGTCTCCAAGCTTTTC-AAGA-T
* * *
414558 TAGG-ATAAAAACACATTCCCTTCATTAGGATGCATGACATTGATCC-TTGGTGTCATAAGAAAA
125 TAGGAATAAAAACACATTCCCTTCATTAGGATACATGACATTGATCCTTTAGTGTCGTAAG-AAA
* * * *
414621 T-CTTTTCTTTCCAACGTTTTTGATAAAATTAATGTTTGTCTCTTAAATAAGATAAACATGAATA
189 TGCTTTTCTTTCCAAAGTTTTTGATAAAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATA
* * * *
414685 CTCATACTAATCCCCATTCATTA-TGGGATTAGGCACCATAAACATAGTCTTTTCACTGGGATAC
254 CTCATACTAATCCCCATTC-TTATTAGGATTA-GCACCATAAACATAGTCTTCTCATTAGGATAC
* *
414749 ACGACATTAATGCTTTGGTTTCGCAAGAAAGGCTTTTTTCTCA-CA-AATTTTTGTAAAGTCTAA
317 ACTATATTAATGCTTTGGTTTCGCAAGAAAGGCTTTTTTC-CACCATAATTTTTGTAAAGTCTAA
* * * * *
414812 GTTCGTATCACAAATGAGACAAACATGGATTCTAGTAATTATCTTCACTCATTTTGTGATTAGGC
381 GTTCGTACCTCAAATGAGACAAACATGGATTCTAGTAATGATTTTCATTCATTTTGTGATTAGGC
414877 ACTATAAACACATTCTCCTCATTAGAG
446 ACTATAAACACATTCTCCTCATTAG-G
* * * *
414904 ATAAATGATATGGATGATTTTCTTTTGCTTGGAAATC--T-ACCCTACTTTCCTTAAAATCAAAC
1 ATAAATGATATTGATGATTTTCTTTTGCATGGAAATCTTTCACCCTATTTTCCTTAAAATCAAAG
* * * * * *****
414966 TTCATCTCTTAAATAGGACAAGCATTGATTCTCGTAACAATCTTTTTTCTTTTCAAGATTAGGAA
66 TTCATCTCTTAAATAAGACAAACATCGATTCTCATAACAGTCTCCAAGCTTTTCAAGATTAGGAA
* * * * *
415031 CCAAAAACTCATTCCCTTCATTAGGATACATGACATTGA-CGCTTTGGAGTCGTAAGAAATGTTT
131 -TAAAAACACATTCCCTTCATTAGGATACATGACATTGATC-CTTTAGTGTCGTAAGAAATGCTT
*** * * * * *
415095 TTCTTTCCATCTTTTTTGATATAATTAAAGTTTATCTCTTAAATATGACAAACATGAATAGTCAT
194 TTCTTTCCAAAGTTTTTGATAAAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACTCAT
** * * ** * * *
415160 TGTAATCCCCATTCCTT-TCAGGATTGGGCACTGTAAA-ATAATCTTCTCATAAGGATGCACGT-
259 ACTAATCCCCATT-CTTATTAGGATT-AGCACCATAAACATAGTCTTCTCATTAGGATACAC-TA
** * * * *
415222 TATTGGTGCTTTGGTTTCGAAAAAAAGGC-TTTTTCC-CC-TAATTTTTGAAAAGTCTAACTTCG
321 TATTAATGCTTTGGTTTCGCAAGAAAGGCTTTTTTCCACCATAATTTTTGTAAAGTCTAAGTTCG
* * * * *
415284 TGCCTCGAATGAGCCAAACATGAATTCTAGTAATGATTTTCATTCATTTTCTGATTAGGCACTAT
386 TACCTCAAATGAGACAAACATGGATTCTAGTAATGATTTTCATTCATTTTGTGATTAGGCACTAT
* *
415349 TAACACATTGTCCTCATTAGG
451 AAACACATTCTCCTCATTAGG
* * * *
415370 ATAAATGATACTAATGATTTTCTTTTGCATGGAAATAATTTCTTTGCCCTATTTTTCC-TAAAAT
1 ATAAATGATATTGATGATTTTCTTTTGCATGGAAAT-CTTTC---ACCCTA-TTTTCCTTAAAAT
* * * *
415434 CAAAGTTCATC-CTTTAAATATGACAAACATTGATTCCCATAACAGTCTCCAAGCTATTCAAAGA
61 CAAAGTTCATCTC-TTAAATAAGACAAACATCGATTCTCATAACAGTCTCCAAGCTTTTC-AAGA
* * * *
415498 TTTAGG-ATGAAAAACAGATT-CCTCTCATTAGGATGCATGACATTAATCCTTT-GTGTTGTAAG
124 -TTAGGAAT-AAAAACACATTCCCT-TCATTAGGATACATGACATTGATCCTTTAGTGTCGTAAG
* *
415560 AAAAT-CTTTTCTTTCCAAAGTTTTTGATAAAATCAAAGTTTTTCTC-TAAATAAGACAAATATG
186 -AAATGCTTTTCTTTCCAAAGTTTTTGATAAAATCAAAGTTTGTCTCTTAAATAAGACAAACATG
415623 AATACTCATACTAATCCCCATTCTTATTAGGATTAGCACCATAAACATAGTCTTCTCATTAGGAT
250 AATACTCATACTAATCCCCATTCTTATTAGGATTAGCACCATAAACATAGTCTTCTCATTAGGAT
* * ** * * *
415688 ACATTATATTAATGCTTTGGTTTTGCAAGAAAGGCATTTTTTCCACCAGTTTTTTTTTTAAATTT
315 ACACTATATTAATGCTTTGGTTTCGCAAGAAAGGC-TTTTTTCCACCA-TAATTTTTGTAAAGTC
* * * *
415753 TAAGTTTGTACCTCAAAAGAGACAAACATGGACTT-TAGTAATGGTTTTTATTCATTTTGTGATT
378 TAAGTTCGTACCTCAAATGAGACAAACATGGA-TTCTAGTAATGATTTTCATTCATTTTGTGA-T
* * *
415817 TA-GCCCTATAAACATATTCTCCACATTAGG
441 TAGGCACTATAAACACATTCTCCTCATTAGG
* * *
415847 ATAAGTGATATTGATGATTTTCTTTTACATGGAAATCTTTTCAAAACCCTATTTTCCTTAAAATA
1 ATAAATGATATTGATGATTTTCTTTTGCATGGAAATC-TTTC---ACCCTATTTTCCTTAAAATC
* ** *
415912 AAAGTTTATCTCTTAAATAAGACAAACATCGATTCTCATAACAGTCTCCATTCTTTTCAAGATTG
62 AAAGTTCATCTCTTAAATAAGACAAACATCGATTCTCATAACAGTCTCCAAGCTTTTCAAGATTA
* * *
415977 GGAACTAAAAACATC-TTCCCTTCATTAGGATATATGACATTGATGCTTTAG-GATCGCAAGAAA
127 GGAA-TAAAAACA-CATTCCCTTCATTAGGATACATGACATTGATCCTTTAGTG-TCGTAAGAAA
* ** * *
416040 TGCTTTTCTTTCCACCA--TTTTGATTGAATCAAAGTTTGTCTCTTAAACAAGACAAACATTAAT
189 TGCTTTTCTTTCCA-AAGTTTTTGATAAAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAAT
* *
416103 ACTCATACTAATCCCCATTCTTTTTAGGATTTGGCACCATAAACATAGTCTTCTCATT
253 ACTCATACTAATCCCCATTCTTATTAGGA-TTAGCACCATAAACATAGTCTTCTCATT
416161 GTGATATAAG
Statistics
Matches: 1032, Mismatches: 174, Indels: 98
0.79 0.13 0.08
Matches are distributed among these distances:
466 33 0.03
467 101 0.10
468 29 0.03
469 124 0.12
470 96 0.09
471 13 0.01
472 86 0.08
473 101 0.10
474 83 0.08
475 16 0.02
476 71 0.07
477 245 0.24
478 34 0.03
ACGTcount: A:0.32, C:0.18, G:0.13, T:0.37
Consensus pattern (471 bp):
ATAAATGATATTGATGATTTTCTTTTGCATGGAAATCTTTCACCCTATTTTCCTTAAAATCAAAG
TTCATCTCTTAAATAAGACAAACATCGATTCTCATAACAGTCTCCAAGCTTTTCAAGATTAGGAA
TAAAAACACATTCCCTTCATTAGGATACATGACATTGATCCTTTAGTGTCGTAAGAAATGCTTTT
CTTTCCAAAGTTTTTGATAAAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACTCATAC
TAATCCCCATTCTTATTAGGATTAGCACCATAAACATAGTCTTCTCATTAGGATACACTATATTA
ATGCTTTGGTTTCGCAAGAAAGGCTTTTTTCCACCATAATTTTTGTAAAGTCTAAGTTCGTACCT
CAAATGAGACAAACATGGATTCTAGTAATGATTTTCATTCATTTTGTGATTAGGCACTATAAACA
CATTCTCCTCATTAGG
Found at i:417061 original size:913 final size:923
Alignment explanation
Indices: 414446--417661 Score: 3219
Period size: 913 Copynumber: 3.4 Consensus size: 923
414436 TATATGGATG
* * * * * *
414446 ATTTTCTTTTGCATCG-AATCATTTCTTTGGCCTATTTTCCTTAAAA-TCAAGTTTATCTTTTAA
1 ATTTTCTTTTGCATGGAAATAATTTCTTTGCCCTATTTTCCTTAAAATTAAAGTTCATCCTTTAA
* * * * *
414509 ATAAAACAAGCATCGATTCTTATAATAGTCTCCAAGCTTTTCAAAGATTTAGGATAAAAACACAT
66 ATAAGACAAGCATAGATTCTCATAACAGTCTCCAAGCTTTTCAAAGATTTAGGATAAAAACAAAT
* *
414574 TCCCTTCATTAGGATGCATGACATTGATCCTTGGTGTCATAAGAAAATCTTTTCTTTCCAACGTT
131 TCCCTCCATTAGGATGCATGACATTGATCCTT-GTGTCGTAAGAAAATCTTTTCTTTCCAACGTT
* * * *
414639 TTTGATAAAAT-TAATGTTTGTCTCTTAAATAAGATAAACATGAATACTCATACTAATCCCCATT
195 TTTGATAAAATCAAAT-TTT-TCTCCTAAATAAGACAAATATGAATACTCATACTAATCCCCATT
* * * * ** *
414703 CATTATGGGATTAGGCACCATAAACATAGTCTTTTCACTGGGATACACGACATTAATGCTTTGGT
258 C-TTATAGGATTAGGCACCATAAACATAGTCTTCTCATTAGGATACATTAAATTAATGCTTTGGT
* * * * * *
414768 TTCGCAAGAAAGGCTTTTTTCTCACAAATTTTTGTAAAGTCTAAGTTCGTATCACAAATGAGACA
322 TTTGCAAGAAAGGCATTTTTCTCACCAATTTTTGTAAAGTCTAAGTTCGTACCTCAAAAGAGACA
* *
414833 AACATGGATTCTAGTAATTATCTTCACTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCA
387 AACATGGATTCTAGTAATGATC-T--C-CATTTTGTGATTAGGCACTATAAACATATTCTCCTCA
* * *
414898 TTAGAGATAAATGATATGGATGATTTTCTTTTGCTTGGAAATC---T-ACCCTACTTTCCTTAAA
448 TTAG-GATAAATGATATTGATGATTTTCTTTTGCATGGAAATCTTTTCACCCTATTTTCCTTAAA
* * *
414959 ATCAAACTTCATCTCTTAAATAGGACAAGCATT-GATTCTCGTAACAATCT-TTTTTCTTTTCAA
512 ATCAAAGTTCATCTCTTAAATAAGACAAGC-TTCGATTCTCGTAACAATCTCTATTT-TTTTCAA
* *
415022 GATT-AGGAACCAAAAAC-TCATTCCCTTCATTAGGATACATGACATTGACGCTTTGGAGTCGTA
575 GATTGA-GAACCAAAAACAT-ATTCCCTTCATTAGGATACATGACATTGATGCTTTGG-GTCGCA
* * * * * * *
415085 AGAAATGTTTTTCTTTCCATCTTTTTTGATATAATTAAAGTTTATCTCTTAAATATGACAAACAT
637 AGAAATGCTTTTCTTTCCACCATTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACAT
* ** * * * *
415150 GAATAGTCATTGTAATCCCCATTCCTTTCAGGATTGGGCACTGTAAA-ATAATCTTCTCATAAGG
702 GAATAATCATACTAATCCCCATTCTTTTTAGGATTGGGCACAGTAAACATAGTCTTCTCAT-AGG
** * *
415214 ATGCACGTTATTGGTGCTTTGGTTTCGAAAAAAAGGCTTTTTCCCCTAATTTTTGAAAAGTCTAA
766 ATGCAC--TATTGAAGC-AT-GATTCG-----AAGGC--TTT---CTAATTTTTGAAAAGTCTAA
* * * *
415279 CTTCGTGCCTCGAATGAGCCAAACATGAATTCTAGTAATGATTTTCATTCATTTTCTGATTAGGC
817 CTTCGTGCCTCAAATGAGACAAACATGAATTCTAGTAAAGATCTTCATTCATTTTCTGATTAGGC
* * *
415344 ACTATTAACACATTGTCCTCATTAGGATAAATGATACTAATG
882 ACTATTAACACATTCTCCTCATTAAGATAAATGATACTAATA
*
415386 ATTTTCTTTTGCATGGAAATAATTTCTTTGCCCTATTTTTCC-TAAAATCAAAGTTCATCCTTTA
1 ATTTTCTTTTGCATGGAAATAATTTCTTTGCCCTA-TTTTCCTTAAAATTAAAGTTCATCCTTTA
* * * * * *
415450 AATATGACAAACATTGATTCCCATAACAGTCTCCAAGCTATTCAAAGATTTAGGATGAAAAACAG
65 AATAAGACAAGCATAGATTCTCATAACAGTCTCCAAGCTTTTCAAAGATTTAGGAT-AAAAACAA
* * *
415515 ATT-CCTCTCATTAGGATGCATGACATTAATCCTTTGTGTTGTAAGAAAATCTTTTCTTTCCAAA
129 ATTCCCTC-CATTAGGATGCATGACATTGATCC-TTGTGTCGTAAGAAAATCTTTTCTTTCCAAC
415579 GTTTTTGATAAAATCAAAGTTTTTCT-CTAAATAAGACAAATATGAATACTCATACTAATCCCCA
192 GTTTTTGATAAAATCAAA-TTTTTCTCCTAAATAAGACAAATATGAATACTCATACTAATCCCCA
*
415643 TTCTTATTAGGATTA-GCACCATAAACATAGTCTTCTCATTAGGATACATTATATTAATGCTTTG
256 TTCTTA-TAGGATTAGGCACCATAAACATAGTCTTCTCATTAGGATACATTAAATTAATGCTTTG
* * * * *
415707 GTTTTGCAAGAAAGGCATTTTT-TCCACCAGTTTTTTTTTTAAATTTTAAGTTTGTACCTCAAAA
320 GTTTTGCAAGAAAGGCATTTTTCT-CACCA---ATTTTTGTAAAGTCTAAGTTCGTACCTCAAAA
* * * *
415771 GAGACAAACATGGACTT-TAGTAATGGTTTTTATTCATTTTGTGATTTA-GCCCTATAAACATAT
381 GAGACAAACATGGA-TTCTAGTAAT-G---ATCTCCATTTTGTGA-TTAGGCACTATAAACATAT
* * *
415834 TCTCCACATTAGGATAAGTGATATTGATGATTTTCTTTTACATGGAAATCTTTTCAAAACCCTAT
440 TCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGGAAATCTTTTC---ACCCTAT
* * * * * * *
415899 TTTCCTTAAAATAAAAGTTTATCTCTTAAATAAGACAAACATCGATTCTCATAACAGTCTCCATT
502 TTTCCTTAAAATCAAAGTTCATCTCTTAAATAAGACAAGCTTCGATTCTCGTAACAATCTCTATT
* * * * *
415964 CTTTTCAAGATTGGGAACTAAAAACATCTTCCCTTCATTAGGATATATGACATTGATGCTTTAGG
567 TTTTTCAAGATTGAGAACCAAAAACATATTCCCTTCATTAGGATACATGACATTGATGCTTT-GG
* * *
416029 ATCGCAAGAAATGCTTTTCTTTCCACCA-TTTTGATTGAATCAAAGTTTGTCTCTTAAACAAGAC
631 GTCGCAAGAAATGCTTTTCTTTCCACCATTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGAC
* * *
416093 AAACATTAATACTCATACTAATCCCCATTCTTTTTAGGATTTGGCACCA-TAAACATAGTCTTCT
696 AAACATGAATAATCATACTAATCCCCATTCTTTTTAGGATTGGGCA-CAGTAAACATAGTCTTCT
* * * * *
416157 CAT-TG-TG-A-TA-T-AAG-AT-ATT-G-ATGC-TT-TGA-TTTTGTAAAGTCTAAGTTCGTGC
760 CATAGGATGCACTATTGAAGCATGATTCGAAGGCTTTCTAATTTTTGAAAAGTCTAACTTCGTGC
* * * *
416209 TTTAAATGAGACAAACATGGATTCTAG-AAAGAATCTTCATTCATTTTGTGATTAAGG-ACTA-T
825 CTCAAATGAGACAAACATGAATTCTAGTAAAG-ATCTTCATTCATTTTCTGATT-AGGCACTATT
* *
416271 AAGCACATTCTCCTCATTAAGATAAATGATGCTACTA
888 AA-CACATTCTCCTCATTAAGATAAATGATACTAATA
* * **
416308 ATTTTCTTTTGCATGGAAATTATTTATTTGCCCTATTTTCCTTAAAATTAAAGTTCATCCCATAA
1 ATTTTCTTTTGCATGGAAATAATTTCTTTGCCCTATTTTCCTTAAAATTAAAGTTCATCCTTTAA
* *
416373 ATAAGACAAGCATAGATTCTCATAACCA-TCTCCAAGCTTTTCAAAGA-TTGGGAACTAAAAATA
66 ATAAGACAAGCATAGATTCTCATAA-CAGTCTCCAAGCTTTTCAAAGATTTAGG-A-TAAAAACA
* * * * *
416436 AATTCCCTCCATTAGGATGCACGACATTGGTCC-T-T-ACGTAAGAAAATATTTTATTTCCAACG
128 AATTCCCTCCATTAGGATGCATGACATTGATCCTTGTGTCGTAAGAAAATCTTTTCTTTCCAACG
*
416498 TTTTTTATAAAATCAAATATTTTCTCCTAAATAAGACAAATATGAATACTCATACTAATCCCCAT
193 TTTTTGATAAAATCAAAT-TTTTCTCCTAAATAAGACAAATATGAATACTCATACTAATCCCCAT
* *
416563 TCTTACCAGGATTAGGCACCATAAACATAGTCTTCTCATTAGGATACATTAAATTGATGCTTTGG
257 TCTTA-TAGGATTAGGCACCATAAACATAGTCTTCTCATTAGGATACATTAAATTAATGCTTTGG
* * * * *
416628 TTTTGCAAAAAATGCATTTTTCTAACCAATTTTTGTAAAGTCTAAGTTCGTGCCTTAAAAGAGAC
321 TTTTGCAAGAAAGGCATTTTTCTCACCAATTTTTGTAAAGTCTAAGTTCGTACCTCAAAAGAGAC
*
416693 AAACATGGATTCTAGTAATGATCTCCATTTTGTGATTAGGCACTATAAACATACTCTCCTCATTA
386 AAACATGGATTCTAGTAATGATCTCCATTTTGTGATTAGGCACTATAAACATATTCTCCTCATTA
*
416758 GGATAAATGATATTGATGATTTTCTTTTGCATGTAAATCTTTTCATTGCCCTATTTTCCTTAAAA
451 GGATAAATGATATTGATGATTTTCTTTTGCATGGAAATCTTTTCA---CCCTATTTTCCTTAAAA
* * *
416823 TCAAAGTTCATCCCTTAAATAAGATAAGCTTCGATTCTTGTAACAATCTCTATTTTTTTCAAGAT
513 TCAAAGTTCATCTCTTAAATAAGACAAGCTTCGATTCTCGTAACAATCTCTATTTTTTTCAAGAT
416888 TGAGAACCAAAAACATATTCCCTTCATTAGGATACATGACATTGATGCTTTCGGGTCGCAAGAAA
578 TGAGAACCAAAAACATATTCCCTTCATTAGGATACATGACATTGATGCTTT-GGGTCGCAAGAAA
*
416953 TGCTTTTCTTTCCACCATTTTTGATAGAATCAAAGTTTGTCTCTAAAATAAGACAAACATGAATA
642 TGCTTTTCTTTCCACCATTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATA
*
417018 ATCATACTAATCCCCATT-TTTTTGGGATTGGGCACAGTAAACATAGTCTTCTCATAAGGATGCA
707 ATCATACTAATCCCCATTCTTTTTAGGATTGGGCACAGTAAACATAGTCTTCTCAT-AGGATGCA
* * * *
417082 -TGATATTAATGCCTTGGTTTCGAAAAAAAAGGCTTTCTTCCCCCTAATTTTTGAAAAGTCTAAG
771 CT-AT-TGAA-G-CAT-GATTCG------AAGGC--T-TT----CTAATTTTTGAAAAGTCTAAC
* * * * * *
417146 TTCGTGCCTCGAATGAG-CTAAACATGGATTTTAGTAATGATCTTCATTCATTTTGTGATTAGGG
818 TTCGTGCCTCAAATGAGAC-AAACATGAATTCTAGTAAAGATCTTCATTCATTTTCTGATTAGGC
* * * * * *
417210 ACTGTAAACACATTCTCCTCATTAGGATAAATGATATTGATG
882 ACTATTAACACATTCTCCTCATTAAGATAAATGATACTAATA
* * * * *
417252 ATTTTCATTTGCATGG--A-AA--TC--TACCTTATTTTCCTT--TATCAAAGTTCATCCTTTAA
1 ATTTTCTTTTGCATGGAAATAATTTCTTTGCCCTATTTTCCTTAAAATTAAAGTTCATCCTTTAA
* * * * *** * * *
417308 ATAGGACAAGCATTGATTCTCGTAACAATCTCCATTATTTTC-AAGA-TTGGGAACCAAAAACAT
66 ATAAGACAAGCATAGATTCTCATAACAGTCTCCAAGCTTTTCAAAGATTTAGG-A-TAAAAACAA
* * * ** *
417371 ATTCCCTTCATTAGGGGAT-AATTGACATTGATGCTT-TGGGGTTACA-AGAAATGATTTTCTTT
129 ATTCCCTCCATTA--GGATGCA-TGACATTGATCCTTGTGTCG-TA-AGA-AAAT-CTTTTCTTT
* * * * * * *
417433 CCACCATTTTTGATAGAATCAAAGCTTGTTCT--TAAATAAGACAAACATGAATAGTTATACTAA
187 CCAACGTTTTTGATAAAATCAAA--TTTTTCTCCTAAATAAGACAAATATGAATACTCATACTAA
* * * * ** * * * *
417496 TCCCCATTCTTTTCAGGATTGGGCACCGTAAACATAGTCTCCTCACAAGGATGCATGATATTGAT
250 TCCCCATTCTTAT-AGGATTAGGCACCATAAACATAGTCTTCTCATTAGGATACATTAAATTAAT
* * ** * * * **
417561 GCTTTGGTATCG-AATGAAAGGTTTTCTTTC-CCCCAATTTTTGAAAAGTCTAAGTTCATGTCTC
314 GCTTTGGTTTTGCAA-GAAAGGCATT-TTTCTCACCAATTTTTGTAAAGTCTAAGTTCGTACCTC
* * * * * *
417624 GAATGAGCCAAATATGGATTCTGGTAATGATCTGCATT
377 AAAAGAGACAAACATGGATTCTAGTAATGATCTCCATT
417662 CATTAGGATA
Statistics
Matches: 1911, Mismatches: 263, Indels: 204
0.80 0.11 0.09
Matches are distributed among these distances:
910 1 0.00
912 5 0.00
913 255 0.13
914 60 0.03
915 1 0.00
916 5 0.00
917 49 0.03
918 45 0.02
919 52 0.03
920 73 0.04
921 19 0.01
922 219 0.11
923 12 0.01
924 1 0.00
926 2 0.00
927 3 0.00
930 3 0.00
934 35 0.02
935 50 0.03
936 14 0.01
937 17 0.01
938 3 0.00
939 7 0.00
940 178 0.09
941 124 0.06
942 121 0.06
943 119 0.06
944 196 0.10
945 11 0.01
946 2 0.00
947 3 0.00
948 2 0.00
949 74 0.04
950 145 0.08
951 5 0.00
ACGTcount: A:0.32, C:0.18, G:0.13, T:0.37
Consensus pattern (923 bp):
ATTTTCTTTTGCATGGAAATAATTTCTTTGCCCTATTTTCCTTAAAATTAAAGTTCATCCTTTAA
ATAAGACAAGCATAGATTCTCATAACAGTCTCCAAGCTTTTCAAAGATTTAGGATAAAAACAAAT
TCCCTCCATTAGGATGCATGACATTGATCCTTGTGTCGTAAGAAAATCTTTTCTTTCCAACGTTT
TTGATAAAATCAAATTTTTCTCCTAAATAAGACAAATATGAATACTCATACTAATCCCCATTCTT
ATAGGATTAGGCACCATAAACATAGTCTTCTCATTAGGATACATTAAATTAATGCTTTGGTTTTG
CAAGAAAGGCATTTTTCTCACCAATTTTTGTAAAGTCTAAGTTCGTACCTCAAAAGAGACAAACA
TGGATTCTAGTAATGATCTCCATTTTGTGATTAGGCACTATAAACATATTCTCCTCATTAGGATA
AATGATATTGATGATTTTCTTTTGCATGGAAATCTTTTCACCCTATTTTCCTTAAAATCAAAGTT
CATCTCTTAAATAAGACAAGCTTCGATTCTCGTAACAATCTCTATTTTTTTCAAGATTGAGAACC
AAAAACATATTCCCTTCATTAGGATACATGACATTGATGCTTTGGGTCGCAAGAAATGCTTTTCT
TTCCACCATTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATAATCATACTA
ATCCCCATTCTTTTTAGGATTGGGCACAGTAAACATAGTCTTCTCATAGGATGCACTATTGAAGC
ATGATTCGAAGGCTTTCTAATTTTTGAAAAGTCTAACTTCGTGCCTCAAATGAGACAAACATGAA
TTCTAGTAAAGATCTTCATTCATTTTCTGATTAGGCACTATTAACACATTCTCCTCATTAAGATA
AATGATACTAATA
Found at i:417146 original size:472 final size:467
Alignment explanation
Indices: 414430--417656 Score: 2751
Period size: 469 Copynumber: 6.9 Consensus size: 467
414420 ATTTGGCACT
* * * *
414430 ATAAATTATATGGATGATTTTCTTTTGCATCG-AATCATTTCT-TTGGCCTATTTTCCTTAAAAT
1 ATAAATGATATTGATGATTTTCTTTTGCATGGAAATC-TTT-TATTGCCCTATTTTCCTTAAAAT
* ** * * ** * * ***
414493 C-AAGTTTATCTTTTAAATAAAACAAGCATCGATTCTTATAATAGTCTCCAAGCTTTTCAAAGAT
64 CAAAGTTCATCCCTTAAATAAGACAAGC-TTGATTCTCGTAACAATCTCCATTATTTTC-AAGA-
* * * * *
414557 TTAGG-A-TAAAAACACATTCCCTTCATTAGGATGCATGACATTGAT-CCTT-GGTGTCATAAGA
126 TTGGGAACCAAAAACATATTCCCTTCATTAGGATACATGACATTGATGCTTTCGG-GTC--AAG-
* * * * * * *
414618 AAAT-CTTTTCTTTCCAACGTTTTTGATAAAATTAATGTTTGTCTCTTAAATAAGATAAACATGA
187 AAATGATTTTCTTTCCACCATTTTTGATAGAATCAAAGTTTGTCTC-TAAATAAGACAAACATGA
* * * * * *
414682 ATACTCATACTAATCCCCATTCATTAT-GGGATTAGGCACCA-TAAACATAGTCTTTTCACT-GG
251 ATAATCATACTAATCCCCATTC-TTTTCAGGATTGGGCA-CAGTAAACATAGTCTTCTCA-TAAG
* * * * * * * * * *
414744 GATACACGACATTAATGCTTTGGTTTCGCAAGAAAGGCTTTTTTCTCACAAATTTTTGTAAAGTC
313 GATGCATGATATTGATGCTTTGGTTTCGAAAAAAAGGCTTTCTTC-CCCCAATTTTTGAAAAGTC
** * *
414809 TAAGTTCGTATCACAAATGAGACAAACATGGATTCTAGTAATTATCTTCACTCATTTTGTGATTA
377 TAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTT--CTCATTTTGTGATTA
414874 GGCACTATAAACACATTCTCCTCATTAGAG
440 GG-ACTATAAACACATTCTCCTCATTAG-G
* * *
414904 ATAAATGATATGGATGATTTTCTTTTGCTTGGAAATC---TA---CCCTACTTTCCTTAAAATCA
1 ATAAATGATATTGATGATTTTCTTTTGCATGGAAATCTTTTATTGCCCTATTTTCCTTAAAATCA
* * * *** * *
414963 AACTTCATCTCTTAAATAGGACAAGCATTGATTCTCGTAACAATCTTTTTTCTTTTCAAGATTAG
66 AAGTTCATCCCTTAAATAAGACAAGC-TTGATTCTCGTAACAATCTCCATTATTTTCAAGATTGG
*
415028 GAACCAAAAAC-TCATTCCCTTCATTAGGATACATGACATTGACGCTTT-GGAGTCGTAAGAAAT
130 GAACCAAAAACAT-ATTCCCTTCATTAGGATACATGACATTGATGCTTTCGG-GTC--AAGAAAT
* * * * * * * *
415091 GTTTTTCTTTCCATCTTTTTTGATATAATTAAAGTTTATCTCTTAAATATGACAAACATGAATAG
191 GATTTTCTTTCCACCATTTTTGATAGAATCAAAGTTTGTCTC-TAAATAAGACAAACATGAATAA
** * * * *
415156 TCATTGTAATCCCCATTCCTTTCAGGATTGGGCACTGTAAA-ATAATCTTCTCATAAGGATGCAC
255 TCATACTAATCCCCATTCTTTTCAGGATTGGGCACAGTAAACATAGTCTTCTCATAAGGATGCAT
* * * *
415220 GTTATTGGTGCTTTGGTTTCGAAAAAAAGGCTTT-TTCCCCTAATTTTTGAAAAGTCTAACTTCG
320 GATATTGATGCTTTGGTTTCGAAAAAAAGGCTTTCTTCCCCCAATTTTTGAAAAGTCTAAGTTCG
* * * * *
415284 TGCCTCGAATGAGCCAAACATGAATTCTAGTAATGATTTTCATTCATTTTCTGATTAGGCACTAT
385 TGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTC--TCATTTTGTGATTAGG-ACTAT
* *
415349 TAACACATTGTCCTCATTAGG
447 AAACACATTCTCCTCATTAGG
* * *
415370 ATAAATGATACTAATGATTTTCTTTTGCATGGAAATAATTTCT-TTGCCCTATTTTTCC-TAAAA
1 ATAAATGATATTGATGATTTTCTTTTGCATGGAAAT-CTTT-TATTGCCCTA-TTTTCCTTAAAA
* * * * * * *** *
415433 TCAAAGTTCATCCTTTAAATATGACAAACATTGATTCCCATAACAGTCTCCAAGCTATTCAAAGA
63 TCAAAGTTCATCCCTTAAATAAGACAAGC-TTGATTCTCGTAACAATCTCCATTATTTTC-AAGA
* ** * * * *
415498 TTTAGG-ATGAAAAACAGATT-CCTCTCATTAGGATGCATGACATTAATCCTTT-GTGTTGT-AA
126 -TTGGGAACCAAAAACATATTCCCT-TCATTAGGATACATGACATTGATGCTTTCG-G--GTCAA
* * * * *
415559 GAAAAT-CTTTTCTTTCCA-AAGTTTTTGATAAAATCAAAGTTTTTCTCTAAATAAGACAAATAT
186 G-AAATGATTTTCTTTCCACCA-TTTTTGATAGAATCAAAGTTTGTCTCTAAATAAGACAAACAT
* * *
415622 GAATACTCATACTAATCCCCATTCTTATT-AGGATT-AGCACCA-TAAACATAGTCTTCTCATTA
249 GAATAATCATACTAATCCCCATTCTT-TTCAGGATTGGGCA-CAGTAAACATAGTCTTCTCATAA
* * * * * * * * * **
415684 GGATACATTATATTAATGCTTTGGTTTTGCAAGAAAGGCATTTTTTCCACCAGTTTTTTTTTTAA
312 GGATGCATGATATTGATGCTTTGGTTTCGAAAAAAAGGC-TTTCTTCCCCCA---ATTTTTGAAA
* * * * * * * *
415749 ATTTTAAGTTTGTACCTCAAAAGAGACAAACATGGACTT-TAGTAATGGTTTTTATTCATTTTGT
373 AGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGA-TTCTAGTAAT-GATCTT-CTCATTTTGT
** * *
415813 GATTTAGCCCTATAAACATATTCTCCACATTAGG
435 GA-TTAGGACTATAAACACATTCTCCTCATTAGG
* * *** *
415847 ATAAGTGATATTGATGATTTTCTTTTACATGGAAATCTTTTCAAAACCCTATTTTCCTTAAAATA
1 ATAAATGATATTGATGATTTTCTTTTGCATGGAAATCTTTT-ATTGCCCTATTTTCCTTAAAATC
* * * * * * *
415912 AAAGTTTATCTCTTAAATAAGACAAACATCGATTCTCATAACAGTCTCCATTCTTTTCAAGATTG
65 AAAGTTCATCCCTTAAATAAGACAAGC-TTGATTCTCGTAACAATCTCCATTATTTTCAAGATTG
* * * * *
415977 GGAACTAAAAACATCTTCCCTTCATTAGGATATATGACATTGATGCTTTAGGATCGCAAGAAATG
129 GGAACCAAAAACATATTCCCTTCATTAGGATACATGACATTGATGCTTTCGGGT--CAAGAAATG
* * * * *
416042 CTTTTCTTTCCACCA-TTTTGATTGAATCAAAGTTTGTCTCTTAAACAAGACAAACATTAATACT
192 ATTTTCTTTCCACCATTTTTGATAGAATCAAAGTTTGTCTC-TAAATAAGACAAACATGAATAAT
* *
416106 CATACTAATCCCCATTCTTTTTAGGATTTGGCACCA-TAAACATAGTCTTCTCAT-----TG--T
256 CATACTAATCCCCATTCTTTTCAGGATTGGGCA-CAGTAAACATAGTCTTCTCATAAGGATGCAT
* * * * * *
416163 GATA-T-AAG--AT--ATT-G------ATGC--T-TT-----GA-TTTTGTAAAGTCTAAGTTCG
320 GATATTGATGCTTTGGTTTCGAAAAAAAGGCTTTCTTCCCCCAATTTTTGAAAAGTCTAAGTTCG
* * *
416206 TGCTTTAAATGAGACAAACATGGATTCTAG-AAAGAATCTTCATTCATTTTGTGATTAAGGACTA
385 TGCCTCAAATGAGACAAACATGGATTCTAGTAATG-ATCTTC--TCATTTTGTGATT-AGGACTA
* *
416270 TAAGCACATTCTCCTCATTAAG
446 TAAACACATTCTCCTCATTAGG
** *
416292 ATAAATGATGCT-ACTAATTTTCTTTTGCATGGAAAT-TATTTATTTGCCCTATTTTCCTTAAAA
1 ATAAATGATATTGA-TGATTTTCTTTTGCATGGAAATCT-TTTA-TTGCCCTATTTTCCTTAAAA
* * * * * ***
416355 TTAAAGTTCATCCCATAAATAAGACAAGCATAGATTCTCATAACCATCTCCAAGCTTTTCAAAGA
63 TCAAAGTTCATCCCTTAAATAAGACAAGC-TTGATTCTCGTAACAATCTCCATTATTTTC-AAGA
* * * * * * * * *
416420 TTGGGAACTAAAAATAAATTCCCTCCATTAGGATGCACGACATTGGTCCTTAC--GT-AAGAAAA
126 TTGGGAACCAAAAACATATTCCCTTCATTAGGATACATGACATTGATGCTTTCGGGTCAAG-AAA
* * * * * * *
416482 T-ATTTTATTTCCAACGTTTTTTATAAAATCAAA-TATTTTCTCCTAAATAAGACAAATATGAAT
190 TGATTTTCTTTCCACCATTTTTGATAGAATCAAAGT-TTGTCT-CTAAATAAGACAAACATGAAT
* ** * * *
416545 ACTCATACTAATCCCCATTCTTACCAGGATTAGGCACCA-TAAACATAGTCTTCTCATTAGGATA
253 AATCATACTAATCCCCATTCTTTTCAGGATTGGGCA-CAGTAAACATAGTCTTCTCATAAGGATG
* * * * * ** *
416609 CATTAAATTGATGCTTTGGTTTTGCAAAAAATGCATTT-TTCTAACCAATTTTTGTAAAGTCTAA
317 CATGATATTGATGCTTTGGTTTCGAAAAAAAGGC-TTTCTTC-CCCCAATTTTTGAAAAGTCTAA
* *
416673 GTTCGTGCCTTAAAAGAGACAAACATGGATTCTAGTAATGATC-TC-CATTTTGTGATTAGGCAC
380 GTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCTCATTTTGTGATTAGG-AC
* *
416736 TATAAACATACTCTCCTCATTAGG
444 TATAAACACATTCTCCTCATTAGG
*
416760 ATAAATGATATTGATGATTTTCTTTTGCATGTAAATCTTTTCATTGCCCTATTTTCCTTAAAATC
1 ATAAATGATATTGATGATTTTCTTTTGCATGGAAATCTTTT-ATTGCCCTATTTTCCTTAAAATC
* * * *
416825 AAAGTTCATCCCTTAAATAAGATAAGCTTCGATTCTTGTAACAATCTCTATTTTTTTCAAGATTG
65 AAAGTTCATCCCTTAAATAAGACAAGCTT-GATTCTCGTAACAATCTCCATTATTTTCAAGATTG
*
416890 AGAACCAAAAACATATTCCCTTCATTAGGATACATGACATTGATGCTTTCGGGTCGCAAGAAATG
129 GGAACCAAAAACATATTCCCTTCATTAGGATACATGACATTGATGCTTTCGGGT--CAAGAAATG
*
416955 CTTTTCTTTCCACCATTTTTGATAGAATCAAAGTTTGTCTCTAAAATAAGACAAACATGAATAAT
192 ATTTTCTTTCCACCATTTTTGATAGAATCAAAGTTTGTCTCT-AAATAAGACAAACATGAATAAT
**
417020 CATACTAATCCCCATT-TTTTTGGGATTGGGCACAGTAAACATAGTCTTCTCATAAGGATGCATG
256 CATACTAATCCCCATTCTTTTCAGGATTGGGCACAGTAAACATAGTCTTCTCATAAGGATGCATG
* *
417084 ATATTAATGCCTTGGTTTCGAAAAAAAAGGCTTTCTTCCCCCTAATTTTTGAAAAGTCTAAGTTC
321 ATATTGATGCTTTGGTTTCG-AAAAAAAGGCTTTCTTCCCCC-AATTTTTGAAAAGTCTAAGTTC
* *
417149 GTGCCTCGAATGAG-CTAAACATGGATTTTAGTAATGATCTTCATTCATTTTGTGATTAGGGACT
384 GTGCCTCAAATGAGAC-AAACATGGATTCTAGTAATGATCTTC--TCATTTTGTGATTA-GGACT
*
417213 GTAAACACATTCTCCTCATTAGG
445 ATAAACACATTCTCCTCATTAGG
* * *
417236 ATAAATGATATTGATGATTTTCATTTGCATGGAAATC---TA---CCTTATTTTCCTT--TATCA
1 ATAAATGATATTGATGATTTTCTTTTGCATGGAAATCTTTTATTGCCCTATTTTCCTTAAAATCA
* *
417293 AAGTTCATCCTTTAAATAGGACAAGCATTGATTCTCGTAACAATCTCCATTATTTTCAAGATTGG
66 AAGTTCATCCCTTAAATAAGACAAGC-TTGATTCTCGTAACAATCTCCATTATTTTCAAGATTGG
*
417358 GAACCAAAAACATATTCCCTTCATTAGGGGATA-ATTGACATTGATGCTTTGGGGTTACAAGAAA
130 GAACCAAAAACATATTCCCTTCATTA--GGATACA-TGACATTGATGCTTTCGGG-T-CAAGAAA
*
417422 TGATTTTCTTTCCACCATTTTTGATAGAATCAAAGCTTGT-TCTTAAATAAGACAAACATGAATA
190 TGATTTTCTTTCCACCATTTTTGATAGAATCAAAGTTTGTCTC-TAAATAAGACAAACATGAATA
* * * * *
417486 GTTATACTAATCCCCATTCTTTTCAGGATTGGGCACCGTAAACATAGTCTCCTCACAAGGATGCA
254 ATCATACTAATCCCCATTCTTTTCAGGATTGGGCACAGTAAACATAGTCTTCTCATAAGGATGCA
* ** *
417551 TGATATTGATGCTTTGGTATCGAATGAAAGGTTTTCTTTCCCCCAATTTTTGAAAAGTCTAAGTT
319 TGATATTGATGCTTTGGTTTCGAAAAAAAGGCTTTC-TTCCCCCAATTTTTGAAAAGTCTAAGTT
* * * * * *
417616 CATGTCTCGAATGAGCCAAATATGGATTCTGGTAATGATCT
383 CGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCT
417657 GCATTCATTA
Statistics
Matches: 2265, Mismatches: 356, Indels: 270
0.78 0.12 0.09
Matches are distributed among these distances:
441 15 0.01
442 92 0.04
443 2 0.00
444 13 0.01
445 172 0.08
446 46 0.02
447 1 0.00
449 3 0.00
450 1 0.00
451 2 0.00
453 1 0.00
454 2 0.00
455 3 0.00
456 1 0.00
458 3 0.00
462 4 0.00
464 1 0.00
465 6 0.00
466 33 0.01
467 236 0.10
468 267 0.12
469 284 0.13
470 101 0.04
471 80 0.04
472 273 0.12
473 109 0.05
474 84 0.04
475 15 0.01
476 149 0.07
477 230 0.10
478 36 0.02
ACGTcount: A:0.32, C:0.18, G:0.13, T:0.37
Consensus pattern (467 bp):
ATAAATGATATTGATGATTTTCTTTTGCATGGAAATCTTTTATTGCCCTATTTTCCTTAAAATCA
AAGTTCATCCCTTAAATAAGACAAGCTTGATTCTCGTAACAATCTCCATTATTTTCAAGATTGGG
AACCAAAAACATATTCCCTTCATTAGGATACATGACATTGATGCTTTCGGGTCAAGAAATGATTT
TCTTTCCACCATTTTTGATAGAATCAAAGTTTGTCTCTAAATAAGACAAACATGAATAATCATAC
TAATCCCCATTCTTTTCAGGATTGGGCACAGTAAACATAGTCTTCTCATAAGGATGCATGATATT
GATGCTTTGGTTTCGAAAAAAAGGCTTTCTTCCCCCAATTTTTGAAAAGTCTAAGTTCGTGCCTC
AAATGAGACAAACATGGATTCTAGTAATGATCTTCTCATTTTGTGATTAGGACTATAAACACATT
CTCCTCATTAGG
Found at i:418335 original size:231 final size:232
Alignment explanation
Indices: 417922--418358 Score: 556
Period size: 231 Copynumber: 1.9 Consensus size: 232
417912 GACAAATGTA
* * * *
417922 AATACTCATTCTAATCCTTATTCTCTTCAGGATTAGGCCCATAAACATAGACTTTTCATTACGAT
1 AATACTCATACTAATCCTCATTCTCTTCAGGATTAGGCCCATAAACATAGACTTCTCACTACGAT
* * * *
417987 ACTTAAAATAGATGCTTTGGTTTCACAAGAAAGGCTTTTTTCTCTCAAATTTTTGTAAAGTCTAA
66 ACTTAAAATAGATACTTTGGTTTCACAAGAAAGGCTTTTTTCCCACAAATTTTTGTAAAGTCAAA
* * *
418052 GTTCATGCCTCAAATAAGACAAACTTGGATTCTAATAATGACCTTCATTCATTT-TGGGATTAGG
131 GTTCATACCTCAAATAAGACAAACATGGATTCTAATAATGACCTTCATTCATTTCAGGGATTAGG
418116 CACTATAAACACATTCTCCACATCAGGATAAAACATT
196 CACTATAAACACATTCTCCACATCAGGATAAAACATT
* * ** ** * *
418153 AATAGTCATACTAATCCTCATTCTTTTTTGGATTAGGCACTGTAAACATAGTCTTCTCACTAGGA
1 AATACTCATACTAATCCTCATTCTCTTCAGGATTAGGC-CCATAAACATAGACTTCTCACTACGA
* * * * *
418218 TACATTATATTA-ATACTTTTGTTTCGCAAGAAAGGC-TTTTTCCCACCAATTTTTGTAAAGTCA
65 TAC-TTAAAATAGATACTTTGGTTTCACAAGAAAGGCTTTTTTCCCACAAATTTTTGTAAAGTCA
** * * * * *
418281 AAGTTTGTACCTCAAATGAGACAAACATGGATTCTAGTAATTATCTTCATTCATTTCAGTGATTA
129 AAGTTCATACCTCAAATAAGACAAACATGGATTCTAATAATGACCTTCATTCATTTCAGGGATTA
418346 GGCACTATAAACA
194 GGCACTATAAACA
418359 TATTATTCCC
Statistics
Matches: 172, Mismatches: 31, Indels: 5
0.83 0.15 0.02
Matches are distributed among these distances:
231 103 0.60
232 63 0.37
233 6 0.03
ACGTcount: A:0.33, C:0.19, G:0.13, T:0.36
Consensus pattern (232 bp):
AATACTCATACTAATCCTCATTCTCTTCAGGATTAGGCCCATAAACATAGACTTCTCACTACGAT
ACTTAAAATAGATACTTTGGTTTCACAAGAAAGGCTTTTTTCCCACAAATTTTTGTAAAGTCAAA
GTTCATACCTCAAATAAGACAAACATGGATTCTAATAATGACCTTCATTCATTTCAGGGATTAGG
CACTATAAACACATTCTCCACATCAGGATAAAACATT
Found at i:419368 original size:476 final size:475
Alignment explanation
Indices: 418146--421335 Score: 3362
Period size: 476 Copynumber: 6.7 Consensus size: 475
418136 CATCAGGATA
* * * ** *
418146 AAACATTAATAGTCATACTAATCCTCATTCTTTTTTGGATTAGGCACTGTAAACATAGTCTTCTC
1 AAACATGAATACTCATACTAATCCCCATTCTTTTCAGGATTAGGCACTATAAACATAGTCTTCTC
* * * * * *
418211 ACTAGGATACATTATATTAATACTTTTGTTTCGCAAGAAAGG-CTTTTTCCCACCAATTTTTGTA
66 ATTAGGATACATGATATTGATGCTTTGGTTTCGCAAGAAAGGTTTTTTTCCCACCAATTTTTGTA
* * * * *
418275 AAGTCAAAGTTTGTACCTCAAATGAGACAAACATGGATTCTAGTAATTATCTTCATTCATTTCAG
131 AAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTT-TG
* * **
418340 TGATTAGGCACTATAAACATATTATTCC-CAACAGGATAAATGATATTGATGATTTT-TTTTGCA
195 TGATTAGGCACTATAAACACATT-CTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCA
* * ** * * *
418403 TGTAAATCTTTTCACTAACCTTATTTTCCTTAAAATCAAAGTTTATCCCTTAAATAGGACAAGCA
259 TGGAAATCTTTTC-TTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCA
* ** * *** *** *
418468 TCGATTGTTATAACAATCTCCACTATTTTCAAGATTAAAAACCAAAAACACATTCCCTTCATTGG
323 TCGATTCTCGTAACAGTCTCCAAGCTTTTCAAGATTGGGAACCAAAAACACATTCCCTTCAAT--
* * *
418533 GGCATACATGACATTGATGCTTTGGGGTCGCAAGAAATA-ATTTTCTTTCCACCATTTTTGATAG
386 GG-ATACATGACATTGATGCTTTGGTGTCACAAGAAA-AGCTTTTCTTTCCACCATTTTTGATAG
* * * ***
418597 AATCAAAGTTTATCTCGTAAATACCAC
449 AATCAAAGTTTGTCTCTTAAAAAAGGC
* * * * * *
418624 AAACATGAATAATTACACAAATCCCCATTCTTTTCAGGATTGGGCA-TCGTAAACATAG-CTTTC
1 AAACATGAATACTCATACTAATCCCCATTCTTTTCAGGATTAGGCACT-ATAAACATAGTC-TTC
* * * * ** * * *
418687 TCATAAGGATGCACGCTATTGATGCTTTGGTTTCAAAAGAAAGGTTTCCTTCCCCCCCAATTTTT
64 TCATTAGGATACATGATATTGATGCTTTGGTTTCGCAAGAAAGGTTT-TTTTCCCACCAATTTTT
* * *
418752 GAAAAGTCTAAGTTCATGCCTCAAATGAG-CTAAACATGGATTTTAGTAATGATCTTCATTCATT
128 GTAAAGTCTAAGTTCGTGCCTCAAATGAGAC-AAACATGGATTCTAGTAATGATCTTCATTCATT
* * * * * *
418816 TTGTGATTAGGCACTTTAAAGACTTTTTCCTCATTAGGATAAACGACT-TTGATGATTTTCTTCT
192 TTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGA-TATTGATGATTTTCTTTT
* * * *
418880 GCATGGAAATCATTTCTTTGCCCCATTTTCCTTAAAATCAAAGTTCACCCCTTAAATAAGACATG
256 GCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAG
* * * *
418945 CATCGATTCTCGTAACAATCTCCAAGCTTTTCAAAAATTTGGAACCAAAAACACA-TCCATTTCA
321 CATCGATTCTCGTAACAGTCTCCAAGCTTTTC-AAGATTGGGAACCAAAAACACATTCC-CTTCA
* * * * * *
419009 ATAGGATACATGACATT-ACTGCTTTGGTGTCATAAGAAAAGCTTCTCTTTGCAACGTTTTTGTT
384 AT-GGATACATGACATTGA-TGCTTTGGTGTCACAAGAAAAGCTTTTCTTTCCACCATTTTTGAT
* *
419073 AGAATCTAAGTTTGTCTCTCAAAAAAGGC
447 AGAATCAAAGTTTGTCTCTTAAAAAAGGC
* * * *
419102 AAACATGAGTACTCATACTAATCCCCATTCTTTTCAAGATTTGGCA-TAAAAACATAGTCTTCTC
1 AAACATGAATACTCATACTAATCCCCATTCTTTTCAGGATTAGGCACTATAAACATAGTCTTCTC
* * * *
419166 ATTATGATACATGATATAGATGCTTTGGTTAT-GTAAGAAAGGTTTTTTTCCCACCAAGTTTTGT
66 ATTAGGATACATGATATTGATGCTTTGGTT-TCGCAAGAAAGGTTTTTTTCCCACCAATTTTTGT
* * * * *
419230 AAAATCTAAATTCGTGCTTCAAGTGAGACAAACATGGATTCTAGTAAAGATCTTCATTCATTTTG
130 AAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTG
* ** * ***
419295 TGATTAGGGACTATAGGCACATTCTCCTCACTAGGATAAATGATGCCGATGATTTTCTTTTGCAT
195 TGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCAT
* * * *
419360 GAAAATCATTTCTTTGCCCTATTTTCCTTAAAATTAAAGTTTATCCCTTAAATAAGACAAGCATC
260 GGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATC
* *
419425 GATTCTCGTAA-ATGTCTCCAAGCTTTTCAAAGATTGGGAACCAAAAACACATTCCCATCATTGG
325 GATTCTCGTAACA-GTCTCCAAGCTTTTC-AAGATTGGGAACCAAAAACACATTCCCTTCAAT-G
* * * * * *
419489 GATACATGACATTGACGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTGCAACGTTTTTGTTAGAAT
387 GATACATGACATTGATGCTTTGGTGTCACAAGAAAAGCTTTTCTTTCCACCATTTTTGATAGAAT
* *
419554 CAAAGTTTGCCTCTTAAATAAA-AC
452 CAAAGTTTGTCTCTTAAA-AAAGGC
* * * * * * *
419578 AAACATTAGTACTCATACAAATCCCCATTCTTTTCAAGATTAGGCACCATATACAAAGTCTTCTC
1 AAACATGAATACTCATACTAATCCCCATTCTTTTCAGGATTAGGCACTATAAACATAGTCTTCTC
* * *
419643 ATTATGATACATGATATTGATGCTTTGGTTTCGCAAGAAAAGCTTTTTTCCCACCAATTTTTGTA
66 ATTAGGATACATGATATTGATGCTTTGGTTTCGCAAGAAAGGTTTTTTTCCCACCAATTTTTGTA
* * * *
419708 AAGTCTAAGTTCGTGCTTCAAATGAGACAAATATCGATTCTAGTAATGATCTTCATTCATTCTGT
131 AAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGT
* * * * *
419773 GATTTGGTACTACAAACATATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGTATG
196 GATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATG
* * * * * *
419838 GAAATCTTTTCGTTGCCTTATTTTCCCTAAAATCAAAGTTCATCCCCTAAATAGGAGAAGCATCG
261 GAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCG
* * * **
419903 ATTCTCATAACCGTCTCTATTCTTTTCAAGATTGGGAACCAAAAACACATTCCCTTC-AT-G--A
326 ATTCTCGTAACAGTCTCCAAGCTTTTCAAGATTGGGAACCAAAAACACATTCCCTTCAATGGATA
* *
419964 CATGACATTAATGCTTTGGTGTCAC-AGAAAAAACTTTTCTTTCCACCATTTTTGATAGAATCAA
391 CATGACATTGATGCTTTGGTGTCACAAG-AAAAGCTTTTCTTTCCACCATTTTTGATAGAATCAA
* * * * *
420028 AATTGGACTTTTAAATAAGAG-
455 AGTTTGTCTCTTAAAAAAG-GC
* *
420049 AAACATGAATACTCATACTAATCCCCATTGTTTT-----TGA-G-A-T-T--ACATAGTCTTCTC
1 AAACATGAATACTCATACTAATCCCCATTCTTTTCAGGATTAGGCACTATAAACATAGTCTTCTC
* * * * *
420103 ATAAGGATACATGATATTGATGCTTTGGTTTTGCATGAAAGGGTTTCTT-CCACCCAATTTTTGT
66 ATTAGGATACATGATATTGATGCTTTGGTTTCGCAAGAAAGGTTTTTTTCCCA-CCAATTTTTGT
* * * ** * * *
420167 AAAATCTAAGTTCGTGCCTCAAAAGAGCCAAGTATGGATTCTAGTAATGATCTTCTTTCAATATG
130 AAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTG
* * * *
420232 TGATTAGGCACTATAAACACACTCTCCTCATTAGGATAAACGATACT-ACTAATTTTCTTTTGCA
195 TGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGATATTGA-TGATTTTCTTTTGCA
* * * * *
420296 TGG-AATCTTTTCTTGGCCCTATTTTCCTTAAAATAAAAGTTTATCCTTTAAATAAGACAAGGAT
259 TGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCAT
* * * * * *
420360 CGTTTCTCGCAACAGTCTCCAATCCTTTCAAGATTGGAAACCAAAAACACATTCCCATC-AT-G-
324 CGATTCTCGTAACAGTCTCCAAGCTTTTCAAGATTGGGAACCAAAAACACATTCCCTTCAATGGA
* * * *
420422 -ACATGACATTAATGCTTTGGTGTCGTA-AAAAAAAACTTTTCTTTCCACCATTTTTAATAGAAT
389 TACATGACATTGATGCTTTGGTGTC--ACAAGAAAAGCTTTTCTTTCCACCATTTTTGATAGAAT
* * * *
420485 TAAAGTTGGTCTTTTAAATAAGAG-
452 CAAAGTTTGTCTCTTAAAAAAG-GC
* *
420509 AAACATGAATACTCATACTAATCGCCATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTC
1 AAACATGAATACTCATACTAATCCCCATTCTTTTCAGGATTAGGCACTATAAACATAGTCTTCTC
* * * * *
420574 TTTAGGATACATGATATTGATG-TTCTGGTTTCACAAGAAAGGCTTTTTTT-CAACTATTTTTTG
66 ATTAGGATACATGATATTGATGCTT-TGGTTTCGCAAGAAAGG-TTTTTTTCCCACCAATTTTTG
* *
420637 TAAAGTCTAAGTTCATGCCTCAAATGAGACAAACATGGATTCTAGCAATGATCTTCATTCATTTT
129 TAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTT
* * * *
420702 GTGATTTGGCACTATAAACTCATTCTTCTCATTAAGATAAATGATATTGATGATTTTCTTTTGCA
194 GTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCA
** * * *
420767 TGGAAATCTTTTCTTTGATCTATTTTTCTT-AAATCAAAGTTCATCCTTTAAATAAGGCAAGCAT
259 TGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCAT
* * * * *
420831 TGATTCTCGTAATATTCTCCATTG-TTTTCAAGATTGGGAACCAAAAACACATTCCCTTCATTAG
324 CGATTCTCGTAACAGTCTCCA-AGCTTTTCAAGATTGGGAACCAAAAACACATTCCCTTCAAT-G
* * * * * * *
420895 GATACATAACTTTGAAGCTTTGGGGTCACATGAAATGCTTTTCTTTGCACCATTTTTGATAGAAT
387 GATACATGACATTGATGCTTTGGTGTCACAAGAAAAGCTTTTCTTTCCACCATTTTTGATAGAAT
*
420960 CAAAGTTTATCTCTTAAATAAA-GC
452 CAAAGTTTGTCTCTTAAA-AAAGGC
* * *
420984 AAACATGAATAGTCATACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACATAGTTTTCTC
1 AAACATGAATACTCATACTAATCCCCATTCTTTTCAGGATTAGGCACTATAAACATAGTCTTCTC
* * * * * ** * * * *
421049 ATAAGGATACACGACATTAATGCCTTGGTTTCAAAACAAAGGCTTTCTTCCC-CTTAATTTTTGT
66 ATTAGGATACATGATATTGATGCTTTGGTTTCGCAAGAAAGGTTTTTTTCCCAC-CAATTTTTGT
** * * * * * * *
421113 AAAGTCTAAGTTCGTGCCTCATTTAAGGCAAACACGAATTCTAGTAATTATCTTCTTTCATTTTT
130 AAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTG
* * * *
421178 TGATTAGGCACTATAAACACATTCTCCTCATGAGGAT-AATTATATCGATGATTTT-TTTTTCAT
195 TGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCAT
* * * * * *
421241 GAAAATCATTTCTTTGGCCTGTTTTCCTTAAAATCAAAGTTCAACCCTTAAATAAGACAAGCATT
260 GGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATC
** *
421306 GATTCTCGTAGTAGTCTCTAAGCTTTTCAA
325 GATTCTCGTAACAGTCTCCAAGCTTTTCAA
421336 AGATGTTAGC
Statistics
Matches: 2277, Mismatches: 375, Indels: 124
0.82 0.14 0.04
Matches are distributed among these distances:
459 131 0.06
460 262 0.12
461 2 0.00
462 1 0.00
464 1 0.00
465 3 0.00
466 3 0.00
467 1 0.00
469 1 0.00
470 6 0.00
471 341 0.15
472 31 0.01
473 32 0.01
474 81 0.04
475 237 0.10
476 401 0.18
477 320 0.14
478 196 0.09
479 116 0.05
480 111 0.05
ACGTcount: A:0.32, C:0.19, G:0.14, T:0.36
Consensus pattern (475 bp):
AAACATGAATACTCATACTAATCCCCATTCTTTTCAGGATTAGGCACTATAAACATAGTCTTCTC
ATTAGGATACATGATATTGATGCTTTGGTTTCGCAAGAAAGGTTTTTTTCCCACCAATTTTTGTA
AAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGT
GATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATG
GAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCG
ATTCTCGTAACAGTCTCCAAGCTTTTCAAGATTGGGAACCAAAAACACATTCCCTTCAATGGATA
CATGACATTGATGCTTTGGTGTCACAAGAAAAGCTTTTCTTTCCACCATTTTTGATAGAATCAAA
GTTTGTCTCTTAAAAAAGGC
Found at i:429150 original size:3 final size:3
Alignment explanation
Indices: 429142--429175 Score: 59
Period size: 3 Copynumber: 11.3 Consensus size: 3
429132 CGAGTTAACT
*
429142 TCA TCA TCA TCA TCA TCA TCA TCT TCA TCA TCA T
1 TCA TCA TCA TCA TCA TCA TCA TCA TCA TCA TCA T
429176 TGATAGTTGA
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
3 29 1.00
ACGTcount: A:0.29, C:0.32, G:0.00, T:0.38
Consensus pattern (3 bp):
TCA
Found at i:433178 original size:52 final size:52
Alignment explanation
Indices: 433093--433217 Score: 205
Period size: 52 Copynumber: 2.4 Consensus size: 52
433083 ATATGAAAAG
* *
433093 TTGCTTGCATGTATCGATACATTTAATAGTGTATCGATACATCTGGGCAAAT
1 TTGCCTGCATGTATCGATACATTTAATAATGTATCGATACATCTGGGCAAAT
**
433145 TTGCCTGCATGTATCGATACATTTTGTAATGTATCGATACATCTGGGCAAAT
1 TTGCCTGCATGTATCGATACATTTAATAATGTATCGATACATCTGGGCAAAT
*
433197 TTGCCTACATGTATCGATACA
1 TTGCCTGCATGTATCGATACA
433218 AAGATCAGTG
Statistics
Matches: 68, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
52 68 1.00
ACGTcount: A:0.28, C:0.18, G:0.18, T:0.36
Consensus pattern (52 bp):
TTGCCTGCATGTATCGATACATTTAATAATGTATCGATACATCTGGGCAAAT
Found at i:433230 original size:52 final size:51
Alignment explanation
Indices: 433100--433237 Score: 181
Period size: 52 Copynumber: 2.6 Consensus size: 51
433090 AAGTTGCTTG
*
433100 CATGTATCGATACATTTAA-TAGTGTATCGATACATCTGGGCAAATTTGCCTG
1 CATGTATCGATACA--TAAGTAGTGTATCGATACATCTGGGCAAATTTGCCTA
** *
433152 CATGTATCGATACATTTTGTAATGTATCGATACATCTGGGCAAATTTGCCTA
1 CATGTATCGATACA-TAAGTAGTGTATCGATACATCTGGGCAAATTTGCCTA
433204 CATGTATCGATACA-AAGATCAGTGTATCGATACA
1 CATGTATCGATACATAAG-T-AGTGTATCGATACA
433238 ATGTATCGAT
Statistics
Matches: 76, Mismatches: 7, Indels: 6
0.85 0.08 0.07
Matches are distributed among these distances:
50 1 0.01
51 3 0.04
52 72 0.95
ACGTcount: A:0.31, C:0.17, G:0.18, T:0.33
Consensus pattern (51 bp):
CATGTATCGATACATAAGTAGTGTATCGATACATCTGGGCAAATTTGCCTA
Found at i:433331 original size:33 final size:33
Alignment explanation
Indices: 433290--433359 Score: 104
Period size: 33 Copynumber: 2.1 Consensus size: 33
433280 GGCAGTAGCT
433290 TACATTGTATCGATACAAAAAAATATGTATCGA
1 TACATTGTATCGATACAAAAAAATATGTATCGA
* ***
433323 TACATTGTATCGATACAACATTTTATGTATCGA
1 TACATTGTATCGATACAAAAAAATATGTATCGA
433356 TACA
1 TACA
433360 AATCGTTGAA
Statistics
Matches: 33, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
33 33 1.00
ACGTcount: A:0.40, C:0.14, G:0.11, T:0.34
Consensus pattern (33 bp):
TACATTGTATCGATACAAAAAAATATGTATCGA
Found at i:433333 original size:13 final size:13
Alignment explanation
Indices: 433315--433339 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
433305 CAAAAAAATA
433315 TGTATCGATACAT
1 TGTATCGATACAT
433328 TGTATCGATACA
1 TGTATCGATACA
433340 ACATTTTATG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:436418 original size:159 final size:159
Alignment explanation
Indices: 436235--436894 Score: 403
Period size: 159 Copynumber: 4.2 Consensus size: 159
436225 GTCTTCATTC
* *
436235 TTTTCAAGATTGGGAACCAAAAACACATTCGCTTCATTAGGATACATGACATTGTTGCCTTGGTG
1 TTTTCAAGATTAGGAACCATAAACACATTCGCTTCATTAGGATACATGACATTGTTGCCTTGGTG
436300 TCATAAGAAAAACCTTTCTTTCCAGCATTATTGATAGAATCAAAGTTTGTCTCTTAAATAAGACA
66 TCATAAGAAAAACCTTTCTTTCCAGCATTATTGATAGAATCAAAGTTTGTCTCTTAAATAAGACA
436365 CACAAGAATAGTCATACTAATCCGAATTA
131 CACAAGAATAGTCATACTAATCCGAATTA
* * * * * * ** *
436394 TTTTCAAGATTAGGCACCATAAACATAGTC-TTCTCA-TATGGATACATGATATTGATGTGTTGA
1 TTTTCAAGATTAGGAACCATAAACACATTCGCT-TCATTA-GGATACATGACATTGTTGCCTTGG
* *** ** * * * * *
436457 TTTTGCAAG-AAAGGCTTTC-CTCCAACCAATTTTTG-TA-AAGTCTAAGTTCATG-C-CTCAAA
64 TGTCATAAGAAAAACCTTTCTTTCC-AGC-ATTATTGATAGAA-TCAAAGTT--TGTCTCTTAAA
* * * * * * * *
436516 TGAGCCAAACATGGAT--TCTAGTAATGATCTTC-ATTTA
124 TAAGACACACAAGAATAGTC-A-TACTAATC--CGAATTA
* ** * * * * **
436553 TTTT-GAGATTAGGTGCTATAAACACGTT-GTCCTT-AATAGGATAAATGATACTATTGATTTTC
1 TTTTCAAGATTAGGAACCATAAACACATTCG--CTTCATTAGGATACATG--AC-ATTG-TTGCC
* * * * * ** * ** *
436615 TT--T-TCCAT--GGAAATCTTTTCTTTGCCTG-ATTTTTCTTAAAATCAAAGTTCATCCCTTAA
60 TTGGTGT-CATAAGAAAAACCTTTCTTT-CCAGCATTATTGATAGAATCAAAGTTTGTCTCTTAA
* ** * *** *
436674 ATAAGACA-AGCATCG-ATTCTCATAAC-AGTCTTCATTC
123 ATAAGACACA-CA-AGAATAGTCAT-ACTAATCCGAATTA
* * *
436711 TTTTCAAGATTGGGAACCAAAAACACATTCGCTTCATTAGGATACATGACATTGTTGCCTCGGTG
1 TTTTCAAGATTAGGAACCATAAACACATTCGCTTCATTAGGATACATGACATTGTTGCCTTGGTG
436776 TCATAAGAAAAACCTTTCTTTCCAGCATTATTGATAGAATCAAAGTTTGTCTCTTAAATAAGACA
66 TCATAAGAAAAACCTTTCTTTCCAGCATTATTGATAGAATCAAAGTTTGTCTCTTAAATAAGACA
436841 CACAAGAATAGTCATACTAATCCGAATTA
131 CACAAGAATAGTCATACTAATCCGAATTA
*
436870 TTTTCAAGATTAGGCACCATAAACA
1 TTTTCAAGATTAGGAACCATAAACA
436895 TAGTCTTCTC
Statistics
Matches: 355, Mismatches: 101, Indels: 90
0.65 0.18 0.16
Matches are distributed among these distances:
155 4 0.01
156 6 0.02
157 12 0.03
158 95 0.27
159 212 0.60
160 14 0.04
161 8 0.02
162 4 0.01
ACGTcount: A:0.33, C:0.18, G:0.14, T:0.34
Consensus pattern (159 bp):
TTTTCAAGATTAGGAACCATAAACACATTCGCTTCATTAGGATACATGACATTGTTGCCTTGGTG
TCATAAGAAAAACCTTTCTTTCCAGCATTATTGATAGAATCAAAGTTTGTCTCTTAAATAAGACA
CACAAGAATAGTCATACTAATCCGAATTA
Found at i:436765 original size:476 final size:474
Alignment explanation
Indices: 435864--438347 Score: 3162
Period size: 476 Copynumber: 5.2 Consensus size: 474
435854 CTTTTCTTTC
* * * * *
435864 CAAATTTTATCTCTTAAATAAGACACACAAGAATAGTCATACTAATCCCTATTCTTTTCAGGATT
1 CAAAGTTTGTCTCTTAAATAAGACAAACAAGAATAGTCATACTAATCCCAATTCTTTTCAAGATT
* * * *
435929 AGGCACCATAAACATAGTCTTCTCATAAGGATTCACGATATTGATGCTTT-AGTTTCGCAAGAAA
66 AGGCACCATAAACATAGTCTTCTCATATGGATACATGATATTGATG-TTTGA-TTTTGCAAGAAA
** * * *
435993 GGCTTTCTTCCCCCCAATTTTGGTAAAGTCTAAGCTCAAGCCTCAAATGAGCCAAACATGGATTC
129 GGCTTTCTTCCAACCAATTTTTGTAAAGTCTAAGTTCATGCCTCAAATGAGCCAAACATGGATTC
* ** * *
436058 TAGTAATGATCTTCATTTATTTTGAGATTAGGTGCTATAAACACGTTGTCCTTAATAGGATAAAT
194 TAGTAATGATCTTCATTTATTTTGTGATTAGGCACTATAAACACATTCTCCTTAATAGGATAAAT
436123 GATACT-ATTGATTTTCTTTTCCATGGAAATCTTTTCTTTGCCTGATTTTTCTTAAAATCAAAGT
259 GATACTGA-TGATTTTCTTTTCCATGGAAATCTTTTCTTTGCCT-ATTTTTCTTAAAATCAAAGT
436187 TCATCCCTTAAATAAGACAAGCATCGATTCTCATAACAGTCTTCATTCTTTTCAAGATTGGGAAC
322 TCATCCCTTAAATAAGACAAGCATCGATTCTCATAACAGTCTTCATTCTTTTCAAGATTGGGAAC
* * *
436252 CAAAAACACATTCGCTTCATTAGGATACATGACATTGTTGCCTTGGTGTCATAAGAAAAACCTTT
387 CAAAAACACATTCCCTTCATTAGGATACATGACATTGATGCCTTGGTGTCACAAGAAAAACCTTT
* *
436317 CTTTCCAGCATTATTGATAGAAT
452 CTTTCCAACATTTTTGATAGAAT
* * *
436340 CAAAGTTTGTCTCTTAAATAAGACACACAAGAATAGTCATACTAATCCGAATTATTTTCAAGATT
1 CAAAGTTTGTCTCTTAAATAAGACAAACAAGAATAGTCATACTAATCCCAATTCTTTTCAAGATT
436405 AGGCACCATAAACATAGTCTTCTCATATGGATACATGATATTGATGTGTTGATTTTGCAAGAAAG
66 AGGCACCATAAACATAGTCTTCTCATATGGATACATGATATTGATGT-TTGATTTTGCAAGAAAG
*
436470 GCTTTCCTCCAACCAATTTTTGTAAAGTCTAAGTTCATGCCTCAAATGAGCCAAACATGGATTCT
130 GCTTTCTTCCAACCAATTTTTGTAAAGTCTAAGTTCATGCCTCAAATGAGCCAAACATGGATTCT
* ** * *
436535 AGTAATGATCTTCATTTATTTTGAGATTAGGTGCTATAAACACGTTGTCCTTAATAGGATAAATG
195 AGTAATGATCTTCATTTATTTTGTGATTAGGCACTATAAACACATTCTCCTTAATAGGATAAATG
436600 ATACT-ATTGATTTTCTTTTCCATGGAAATCTTTTCTTTGCCTGATTTTTCTTAAAATCAAAGTT
260 ATACTGA-TGATTTTCTTTTCCATGGAAATCTTTTCTTTGCCT-ATTTTTCTTAAAATCAAAGTT
436664 CATCCCTTAAATAAGACAAGCATCGATTCTCATAACAGTCTTCATTCTTTTCAAGATTGGGAACC
323 CATCCCTTAAATAAGACAAGCATCGATTCTCATAACAGTCTTCATTCTTTTCAAGATTGGGAACC
* * * *
436729 AAAAACACATTCGCTTCATTAGGATACATGACATTGTTGCCTCGGTGTCATAAGAAAAACCTTTC
388 AAAAACACATTCCCTTCATTAGGATACATGACATTGATGCCTTGGTGTCACAAGAAAAACCTTTC
* *
436794 TTTCCAGCATTATTGATAGAAT
453 TTTCCAACATTTTTGATAGAAT
* * *
436816 CAAAGTTTGTCTCTTAAATAAGACACACAAGAATAGTCATACTAATCCGAATTATTTTCAAGATT
1 CAAAGTTTGTCTCTTAAATAAGACAAACAAGAATAGTCATACTAATCCCAATTCTTTTCAAGATT
436881 AGGCACCATAAACATAGTCTTCTCATATGGATACATGATATTGATGTGTTGATTTTGCAAGAAAG
66 AGGCACCATAAACATAGTCTTCTCATATGGATACATGATATTGATGT-TTGATTTTGCAAGAAAG
*
436946 GCTTTCCTCCAACCAATTTTTGTAAAGTCTAAGTTCATGCCTCAAATGAGCCAAACATGGATTCT
130 GCTTTCTTCCAACCAATTTTTGTAAAGTCTAAGTTCATGCCTCAAATGAGCCAAACATGGATTCT
* * * * * * * *
437011 AGCATTGATCTTCATTCATTTTGTGATTAGGCACTTTAAACACATTCTCCTCATTAGGATAACTC
195 AGTAATGATCTTCATTTATTTTGTGATTAGGCACTATAAACACATTCTCCTTAATAGGATAAATG
*
437076 ATACTGATGATTTTCTTTTGCATGGAAATCATTTT-TTTGACCTATTTTT-TGTAAAATCAAAGT
260 ATACTGATGATTTTCTTTTCCATGGAAATC-TTTTCTTTG-CCTATTTTTCT-TAAAATCAAAGT
* * * * **
437139 TCATCCCTTAAATAATG-CAAGCATCGATTCTCGTGATAGTCTCCAAGCTTTTCAAAGATTGGGA
322 TCATCCCTTAAATAA-GACAAGCATCGATTCTCATAACAGTCTTCATTCTTTTC-AAGATTGGGA
* * * * * *
437203 ACC----ACAC--TCCCTTCATTAGGATACATAACATTGATGCTTTTGTGTCGCAAGAAAAGCTT
385 ACCAAAAACACATTCCCTTCATTAGGATACATGACATTGATGCCTTGGTGTCACAAGAAAAACCT
437262 TTCTTTCCAACATTTTTGATAGAAT
450 TTCTTTCCAACATTTTTGATAGAAT
* * *** * *
437287 CAAAGTTTGTCTCTTTAATTAGACAAATGTGAATGGTCATACTAATCCCGATTCTTTTCAAGATT
1 CAAAGTTTGTCTCTTAAATAAGACAAACAAGAATAGTCATACTAATCCCAATTCTTTTCAAGATT
* * * * *
437352 AAGCCCCATAAACATAGTCTTCTCATAAGGATACACGATATTGATGCTTTGGTTTTG-AATGAAA
66 AGGCACCATAAACATAGTCTTCTCATATGGATACATGATATTGATG-TTTGATTTTGCAA-GAAA
* * *
437416 GGCTTTCTTCC-TCCAAATTTTTGTATAGTCTAAGTTCGTGCCTCAAAT-AGCCAAACATGGATT
129 GGCTTTCTTCCAACC-AATTTTTGTAAAGTCTAAGTTCATGCCTCAAATGAGCCAAACATGGATT
* * *
437479 CTAGTAATGATCTTTATTCT-TTTTGTGATTAGGCACTATAATCACATTCTCCTTAGTAGGATAA
193 CTAGTAATGATCTTCATT-TATTTTGTGATTAGGCACTATAAACACATTCTCCTTAATAGGATAA
* * * *
437543 ATGATACTGATGATTTTTTTTTGCATGGAAATCATTTCTTTGCCCTATTTTTCCTAAAATCAAAG
257 ATGATACTGATGATTTTCTTTTCCATGGAAATCTTTTCTTTG-CCTATTTTTCTTAAAATCAAAG
* * * * **
437608 TCCATCCCTTAAATAAGACAAGCATCGATTCTCGTAAGAGTTTTCATTCTTTTCAAGATTGGTTA
321 TTCATCCCTTAAATAAGACAAGCATCGATTCTCATAACAGTCTTCATTCTTTTCAAGATTGGGAA
** * * ** **
437673 CCAAAAACACATTCTTTTCATTAAGATAAATGACATTGATGATTTGG-GATCACAAG-AAATGCT
386 CCAAAAACACATTCCCTTCATTAGGATACATGACATTGATGCCTTGGTG-TCACAAGAAAAACCT
* * * * *
437736 TTTTTTTCACCGTTTTTGTTAGAAT
450 TTCTTTCCAACATTTTTGATAGAAT
* * * * * * * * *
437761 CAAAGTTTATCTCTTAATTAAGACAAACATGAATACTTATACTAATCCCCATTCTTTTTAGGGTT
1 CAAAGTTTGTCTCTTAAATAAGACAAACAAGAATAGTCATACTAATCCCAATTCTTTTCAAGATT
* * * * *
437826 AGGCACTATAAACATAGTCTTCTCAT-TAGGATAAATGATATTGATGCATTGGTTTCGCAAGAAA
66 AGGCACCATAAACATAGTCTTCTCATAT-GGATACATGATATTGATG-TTTGATTTTGCAAGAAA
** * *
437890 GGCTTTCTTCCCCCCAATTTTTGAAAAGTCTAAG-TCTATGCCTCAAATGAGCCAAACATAGATT
129 GGCTTTCTTCCAACCAATTTTTGTAAAGTCTAAGTTC-ATGCCTCAAATGAGCCAAACATGGATT
* * * *
437954 CTATTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCT-CTTCATTAGGATAT
193 CTAGTAATGATCTTCATTTATTTTGTGATTAGGCACTATAAACACATTCTCCTT-AATAGGATAA
* * *
438018 ATGATACTGATGATTTT-TGTTTACATGGAAATCTTTTCTTTGCTCTATTTTCCATAAAATCAAA
257 ATGATACTGATGATTTTCT-TTTCCATGGAAATCTTTTCTTTGC-CTATTTTTCTTAAAATCAAA
* * * *
438082 GTTCATCCCTTAAATAAGACAAGCATCAATTCTCATAACAGTCTCCATTCTTTTCAAAATTGAGA
320 GTTCATCCCTTAAATAAGACAAGCATCGATTCTCATAACAGTCTTCATTCTTTTCAAGATTGGGA
* * * * * * * *
438147 ACCAAAAACACATTCCCTTCATTAGGGTATATGACAATGATGCATTGGTGTCGCAAGGAAAGCTT
385 ACCAAAAACACATTCCCTTCATTAGGATACATGACATTGATGCCTTGGTGTCACAAGAAAAACCT
* *
438212 TTCTTTCCAACTTTTTTGATAGCAT
450 TTCTTTCCAACATTTTTGATAGAAT
* ** * * * *
438237 CAAAGTTTGTCTTTTAAATAAGACAAACATTAATACTCATAGTAATCCCCATTC-TTTCTAGGAT
1 CAAAGTTTGTCTCTTAAATAAGACAAACAAGAATAGTCATACTAATCCCAATTCTTTTC-AAGAT
* * **
438301 AAGGCACCGTAAACATAGTCTTCTCAT-TACAATACATGATATTGATG
65 TAGGCACCATAAACATAGTCTTCTCATAT-GGATACATGATATTGATG
438348 CTTTAGTTTA
Statistics
Matches: 1789, Mismatches: 185, Indels: 68
0.88 0.09 0.03
Matches are distributed among these distances:
469 15 0.01
470 173 0.10
471 215 0.12
472 1 0.00
473 10 0.01
474 172 0.10
475 267 0.15
476 913 0.51
477 23 0.01
ACGTcount: A:0.32, C:0.19, G:0.14, T:0.36
Consensus pattern (474 bp):
CAAAGTTTGTCTCTTAAATAAGACAAACAAGAATAGTCATACTAATCCCAATTCTTTTCAAGATT
AGGCACCATAAACATAGTCTTCTCATATGGATACATGATATTGATGTTTGATTTTGCAAGAAAGG
CTTTCTTCCAACCAATTTTTGTAAAGTCTAAGTTCATGCCTCAAATGAGCCAAACATGGATTCTA
GTAATGATCTTCATTTATTTTGTGATTAGGCACTATAAACACATTCTCCTTAATAGGATAAATGA
TACTGATGATTTTCTTTTCCATGGAAATCTTTTCTTTGCCTATTTTTCTTAAAATCAAAGTTCAT
CCCTTAAATAAGACAAGCATCGATTCTCATAACAGTCTTCATTCTTTTCAAGATTGGGAACCAAA
AACACATTCCCTTCATTAGGATACATGACATTGATGCCTTGGTGTCACAAGAAAAACCTTTCTTT
CCAACATTTTTGATAGAAT
Found at i:438739 original size:425 final size:426
Alignment explanation
Indices: 437939--438774 Score: 1063
Period size: 425 Copynumber: 2.0 Consensus size: 426
437929 GCCTCAAATG
*
437939 AGCCAAACATAGATTCTATTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCT
1 AGCCAAACATAGATTCTATTAATGATCTTCATTCATTTTGTGATTAGGCACCATAAACACATTCT
* * * * * *
438004 CTTCATTAGGATATATGATACTGATGATTTTTGTTTACATGGAAATCTTTTCTTTGCTCTATTTT
66 CCTCATTAGGACAGATGATACTGATAATTTCTGTTTACATGAAAATCTTTTCTTTGCTCTATTTT
*
438069 CCATAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCAATTCTCATAACAGTCTCCATTCTT
131 CCATAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCAATTCTCATAACAGTCACCATTCTT
*
438134 TTCAAAATTGAGAACCAAAAACACATTCCCTTCATTAGGGTATATGACAATGATGCATTGGTGTC
196 TTCAAAATTGAGAACCAAAAACACATTCCCTTCATTAGGGTACATGACAATGATGCATTGGTGTC
* * * * *
438199 GCAAGGAAAGCTTTTCTTTCCAACTTTTTTGATAGCATCAAAGTTTGTCTTTTAAATAAGACAAA
261 GCAAGGAAAGCTTTTCTTTCCAACGTTTTTAATAGAATCAAAGTTTGTCTTCTAAATAAAACAAA
* * * * *
438264 CATTAATACTCATAGTAATCCCCATTCTTTCTAGGATAAGGCACCGTAAACATAGTCTTCTCATT
326 CATTAATACTCATACTAATCCCCATTCTTTCTAAGATAAGACACCGTAAACATAGCCTTCTCATA
438329 A-CAATACATGATATTGATGCTTTAGTTTAACCAGAA
391 AGC-ATACATGATATTGATGCTTTAGTTTAACCAGAA
* * * * *
438365 AGCCAAACAT-GAATTCT-TGTAATGATGTTTATTCATTTTGTGATTAGGCACCCTATACATATT
1 AGCCAAACATAG-ATTCTAT-TAATGATCTTCATTCATTTTGTGATTAGGCACCATAAACACATT
*
438428 CTCCTCATTAGGACAGATGATACT-ATTAATTTCT-TTTGCATGAAAATCTTTTCTTTGC-CTTA
64 CTCCTCATTAGGACAGATGATACTGA-TAATTTCTGTTTACATGAAAATCTTTTCTTTGCTC-TA
* * ** *
438490 TTTTCC-TAAAAATCACAA-TTCATCTCTTAAATAAGACAAGCATCGATTCTTGTAATAGTCACC
127 TTTTCCAT-AAAATCA-AAGTTCATCCCTTAAATAAGACAAGCATCAATTCTCATAACAGTCACC
* * * * *
438553 ATTCTTTTCAAGATTGGGAACCAAAAACACATTCTCTTCATTAGGAG-ACATGACATTGATGCTT
190 ATTCTTTTCAAAATTGAGAACCAAAAACACATTCCCTTCATTAGG-GTACATGACAATGATGCAT
* * *
438617 TAGG-GTTGCAA-GAATTA-TTTTTCTTTGCATA-GTTTTTAATAGAATCAAAGTTTGTCTTCTA
254 T-GGTGTCGCAAGGAA--AGCTTTTCTTTCCA-ACGTTTTTAATAGAATCAAAGTTTGTCTTCTA
* * * *
438678 AATAAAACAAACATTAATAAGT-ATACTAATCCTCATTCTTT-TCAAGATTAGACATCGTAAACA
315 AATAAAACAAACATTAAT-ACTCATACTAATCCCCATTCTTTCT-AAGATAAGACACCGTAAACA
438741 TAGCCTTCTCATAAGCATACATGATATTGATGCT
378 TAGCCTTCTCATAAGCATACATGATATTGATGCT
438775 CTGGTTTTGA
Statistics
Matches: 354, Mismatches: 42, Indels: 29
0.83 0.10 0.07
Matches are distributed among these distances:
424 6 0.02
425 258 0.73
426 90 0.25
ACGTcount: A:0.33, C:0.18, G:0.12, T:0.37
Consensus pattern (426 bp):
AGCCAAACATAGATTCTATTAATGATCTTCATTCATTTTGTGATTAGGCACCATAAACACATTCT
CCTCATTAGGACAGATGATACTGATAATTTCTGTTTACATGAAAATCTTTTCTTTGCTCTATTTT
CCATAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCAATTCTCATAACAGTCACCATTCTT
TTCAAAATTGAGAACCAAAAACACATTCCCTTCATTAGGGTACATGACAATGATGCATTGGTGTC
GCAAGGAAAGCTTTTCTTTCCAACGTTTTTAATAGAATCAAAGTTTGTCTTCTAAATAAAACAAA
CATTAATACTCATACTAATCCCCATTCTTTCTAAGATAAGACACCGTAAACATAGCCTTCTCATA
AGCATACATGATATTGATGCTTTAGTTTAACCAGAA
Found at i:439320 original size:475 final size:473
Alignment explanation
Indices: 438365--440800 Score: 2884
Period size: 475 Copynumber: 5.1 Consensus size: 473
438355 TTAACCAGAA
* * * ** *
438365 AGCCAAACATGAATTCTTGTAATGATGTTTATTCATTTTGTGATTAGGCACCCTATACATATTCT
1 AGCCAAACATGAATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACATATTCT
* * *
438430 CCTCATTAGGACAGATGATACT-ATTAA-TTTCTTTTGCATGAAAATCTTTTCTTTGCCTTATTT
66 CCTCATTAGGATAGATGATATTGA-TAATTTTCTTTTGCATGAAAATCTTTTCTTTGCCCTATTT
* * *
438493 TCCTAAAAATCACAA-TTCAT-CTCTTAAATAAGACAAGCATCGATTCTTGTAATAGTCACCATT
130 TCCTTAAAATCA-AAGTTCATCCTC-TAAATAAGACAAGCATCGATTCTCGTAATAGTCTCCATT
* *
438556 CTTTTCAAGATTGGGAACCAAAAACACATTCTCTTCATTAGGAGACATGACATTGATGCTTTAGG
193 CTTTTCAAGATTGGGAACCAAAAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTAGG
* * * * * * *
438621 GTTGCAAGAATTATTTTTCTTTGCA-TAGTTTTTAATAGAATCAAAGTTTGTCTTCTAAATAAAA
258 GTCGCAAGAA-TACTTTTCTTTGCACGA-TTTTTGATAGAATCAAAGTTTATCTCCTAAATAAGA
* * * * *
438685 CAAACATTAATAAGT-ATACTAATCCTCATTCTTTTCAAGATTAGACATCGTAAACATAGCCTTC
321 CAAACATGAAT-AGTCATACTAATCC-CATTCTTTTCAAGATTAGGCACCATAAACATAGTCTTC
* * * *
438749 TCATAAGCATACATGATATTGATGCTCTGGTTTTGAAAGAAAAGCTTTCTTCCCC-CAATATTTG
384 TCATTAGCATACATGATATTGATGCTTTGG-TTTGAAAGAAAGGCTTTCTTCCCCTCAATTTTTG
* * *
438813 TAAAGTCTGAGTTCGTGCCTCAAATT
448 TAAAGTCTAAGTTCATGCCTCAAATG
* * * ** *
438839 AGCCAAACATGAATTCTTGTAATGATGTTCATTCATTTTGTGATTAGGCACTCTGTATATATTCT
1 AGCCAAACATGAATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACATATTCT
*
438904 CCTCATTAGGATAGACGATATTGATAATTTTCTTTTGCATGAAAATCTTTTCTTTGCCCTATTTT
66 CCTCATTAGGATAGATGATATTGATAATTTTCTTTTGCATGAAAATCTTTTCTTTGCCCTATTTT
* * *
438969 CCTGAAAATCAAAGTTCATCCTCTAAATAAGACAAGCATCGATTCTCGTAAGAGTCACCATTCTT
131 CCTTAAAATCAAAGTTCATCCTCTAAATAAGACAAGCATCGATTCTCGTAATAGTCTCCATTCTT
* * *
439034 TTCAAGATTGGGAACCAAAAACACATTCCCTTTATTAGGAGACATGACATTGATGCTTTAGGGTT
196 TTCAAGATTGGGAACCAAAAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTAGGGTC
* *
439099 GCAAGAATTACTTTT-TTTGCACGATTTTTTATAGAATCAAAATTTATCTCCTAAATAAGACAAA
261 GCAAGAA-TACTTTTCTTTGCACGATTTTTGATAGAATCAAAGTTTATCTCCTAAATAAGACAAA
* * * **
439163 CATTAATAGTCATACTAATCCTCATTCTTTTCAAGATTAGTCACCATAAAGATAGTCTTCTCACA
325 CATGAATAGTCATACTAATCC-CATTCTTTTCAAGATTAGGCACCATAAACATAGTCTTCTCATT
* **
439228 AGCATACATGATATTGATGCTATGGTTTTGAAAGAAAGGCTTTCTTCCCCTCAAGATTTGTAAAG
389 AGCATACATGATATTGATGCTTTGG-TTTGAAAGAAAGGCTTTCTTCCCCTCAATTTTTGTAAAG
* *
439293 TTTGAGTTCATGCCTCAAATG
453 TCTAAGTTCATGCCTCAAATG
* * * *
439314 AGCCAAACGTGAATTCTAGTAATGATCTTCATTTATTTTGTGATTAGGCACTATAAACACATTGT
1 AGCCAAACATGAATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACATATTCT
* * * * * * *
439379 CCTCATTATGATAAAGGATATTGGTGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCTTATTTT
66 CCTCATTAGGATAGATGATATTGATAATTTTCTTTTGCATGAAAATCTTTTCTTTGCCCTATTTT
* * * *
439444 TCTTAAAATCAAAGTTCATCC-CTTAAATAAGACAATG-AGCAATTCTCGTAATAGTCTTCATTC
131 CCTTAAAATCAAAGTTCATCCTC-TAAATAAGACAA-GCATCGATTCTCGTAATAGTCTCCATTC
* * *
439507 TTTTCAAGATTGGGAACCAAAAACATATTCCCTTCATTAGCATACATGACATTGATGCTTTGGGG
194 TTTTCAAGATTGGGAACCAAAAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTAGGG
* * * * * * *
439572 TCACAAGAAATGCTTTTCTTTCCACCG-TTTTTGCTAAAATCAAAGTTTCTCTCTTAAATAAGAC
259 TCGCAAG-AATACTTTTCTTTGCA-CGATTTTTGATAGAATCAAAGTTTATCTCCTAAATAAGAC
* * *
439636 AAACCTGAATAGTCATACTAATCCCTATTATTTTCAAGATTAGGCACCATAAACATAGTCGTCTC
322 AAACATGAATAGTCATACTAATCCC-ATTCTTTTCAAGATTAGGCACCATAAACATAGTCTTCTC
* * * * * * * *
439701 ATTAGAATACTTGATATTGATACTTTGGTTTCACTAGAAAGCCTTTCTTCCCCCCAATTTTGGTA
386 ATTAGCATACATGATATTGATGCTTTGGTTTGA-AAGAAAGGCTTTCTTCCCCTCAATTTTTGTA
**
439766 AAGTCTAAGTTTGTGCCTCAAATG
450 AAGTCTAAGTTCATGCCTCAAATG
* * *
439790 AGCCAAACAT-AGATTCTAATAATGATCTTCATTCATTTTGTAATTAGGCACTATAAACACATTC
1 AGCCAAACATGA-ATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACATATTC
* * * * *
439854 TCCGCATTAGGATAAATGATAATGATAATTTTCTTTTGCATGAAAATCTTTCCTTTGCCCTAGTT
65 TCCTCATTAGGATAGATGATATTGATAATTTTCTTTTGCATGAAAATCTTTTCTTTGCCCTATTT
* * *
439919 TCCTTAAAATCAAAGTTCATCCTTTAAATAAGACAAGCATCGATTCTCGTAACAATCTCCATTCT
130 TCCTTAAAATCAAAGTTCATCCTCTAAATAAGACAAGCATCGATTCTCGTAATAGTCTCCATTCT
* * * * * * *
439984 TTTCAACATTGGGAACCAAAAACACATTCTCTTCATTAGGATAAATAACATTAATGC-TTCGATG
195 TTTCAAGATTGGGAACCAAAAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTAG-GG
*
440048 TCGCAA-AA-AGCTTTTCTTTGCAAC-ATTTTTGATAGAATCAAAGTTTATCTCTTAAATAAGAC
259 TCGCAAGAATA-CTTTTCTTTGC-ACGATTTTTGATAGAATCAAAGTTTATCTCCTAAATAAGAC
* *
440110 AAACATGAATAGTTATACTAATCCCCATTTTTTTTC-AGATTAGGCACCATAAACATAGTCTTCT
322 AAACATGAATAGTCATACTAAT-CCCA-TTCTTTTCAAGATTAGGCACCATAAACATAGTCTTCT
* * * * * * * * *
440174 CATTAGGAAACATGATATTAATGCTTTGGATTTGCAAGAAAGGTTTTTTTCCCGTTAACTTTTGT
385 CATTAGCATACATGATATTGATGCTTTGG-TTTGAAAGAAAGGCTTTCTTCCCCTCAATTTTTGT
*
440239 AAAGTCTAAGTTCATGCCTCAAATA
449 AAAGTCTAAGTTCATGCCTCAAATG
* * *
440264 AGACAAACATGGATTTTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACATATTCT
1 AGCCAAACATGAATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACATATTCT
* * * * * * *
440329 CTTTATTAGAAAAAGA-GATATTGATGATTTTTTTTTGCATGAAAATCTTTTCGTTGCCCTATTT
66 CCTCATTAG-GATAGATGATATTGATAATTTTCTTTTGCATGAAAATCTTTTCTTTGCCCTATTT
* * * * **
440393 TTCTTAAAATCAATGTTTTATCACT-TAATTAAGACAAGCATAAATTCTCGTAATAGTCTCCATT
130 TCCTTAAAATCAAAG-TTCATC-CTCTAAATAAGACAAGCATCGATTCTCGTAATAGTCTCCATT
* * * ** *
440457 CTTTTCAAGATTAGGAACGAAAAACACATTCCCTTTATTAGGATACAACACATTAATGCTTT-GG
193 CTTTTCAAGATTGGGAACCAAAAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTAGG
* * * *
440521 TGTCGCAAGAAAAGCTTTTCTTTCCAACG-TTTTTTATAGAATCAAAGTTTGTC-CCTTAAATAA
258 -GTCGCAAGAATA-CTTTTCTTTGC-ACGATTTTTGATAGAATCAAAGTTTATCTCC-TAAATAA
* * * *
440584 GACAAAACATGAAAACTCATACTAATCCCTATTCTTTTCAGGATTAGGCACCATTAACATAGTCT
319 GAC-AAACATGAATAGTCATACTAATCCC-ATTCTTTTCAAGATTAGGCACCATAAACATAGTCT
* * * * *
440649 TCTCATTAGGATACATGATATTGATGCTTTGGATTCATAAGAAAGACTTTTTTCCCACT-AATTT
382 TCTCATTAGCATACATGATATTGATGCTTTGGTTTGA-AAGAAAGGCTTTCTTCCC-CTCAATTT
* *
440713 TTGTAAAGTCTAAGTTAATGACTCAAATG
445 TTGTAAAGTCTAAGTTCATGCCTCAAATG
* * * *
440742 AGACAAACAAGGATTCTAGTACTGATCTTCATTCATTTTGTGATTAGGCACTATAAACA
1 AGCCAAACATGAATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACA
440801 CTGTTAGGAT
Statistics
Matches: 1709, Mismatches: 214, Indels: 74
0.86 0.11 0.04
Matches are distributed among these distances:
473 3 0.00
474 511 0.30
475 562 0.33
476 396 0.23
477 61 0.04
478 175 0.10
479 1 0.00
ACGTcount: A:0.32, C:0.18, G:0.13, T:0.37
Consensus pattern (473 bp):
AGCCAAACATGAATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACATATTCT
CCTCATTAGGATAGATGATATTGATAATTTTCTTTTGCATGAAAATCTTTTCTTTGCCCTATTTT
CCTTAAAATCAAAGTTCATCCTCTAAATAAGACAAGCATCGATTCTCGTAATAGTCTCCATTCTT
TTCAAGATTGGGAACCAAAAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTAGGGTC
GCAAGAATACTTTTCTTTGCACGATTTTTGATAGAATCAAAGTTTATCTCCTAAATAAGACAAAC
ATGAATAGTCATACTAATCCCATTCTTTTCAAGATTAGGCACCATAAACATAGTCTTCTCATTAG
CATACATGATATTGATGCTTTGGTTTGAAAGAAAGGCTTTCTTCCCCTCAATTTTTGTAAAGTCT
AAGTTCATGCCTCAAATG
Found at i:441211 original size:13 final size:13
Alignment explanation
Indices: 441190--441219 Score: 51
Period size: 13 Copynumber: 2.3 Consensus size: 13
441180 CGATACATGG
*
441190 TACATTGTATCGA
1 TACAATGTATCGA
441203 TACAATGTATCGA
1 TACAATGTATCGA
441216 TACA
1 TACA
441220 TGATGAATTG
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.37, C:0.17, G:0.13, T:0.33
Consensus pattern (13 bp):
TACAATGTATCGA
Found at i:449643 original size:20 final size:20
Alignment explanation
Indices: 449618--449671 Score: 90
Period size: 20 Copynumber: 2.7 Consensus size: 20
449608 AAATTCACGG
*
449618 ATGTATCGGTACAAAGATCA
1 ATGTATCGATACAAAGATCA
449638 ATGTATCGATACAAAGATCA
1 ATGTATCGATACAAAGATCA
*
449658 ATGTATCAATACAA
1 ATGTATCGATACAA
449672 TGTATCGATA
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 32 1.00
ACGTcount: A:0.44, C:0.15, G:0.15, T:0.26
Consensus pattern (20 bp):
ATGTATCGATACAAAGATCA
Found at i:453050 original size:476 final size:475
Alignment explanation
Indices: 450943--454027 Score: 3815
Period size: 476 Copynumber: 6.5 Consensus size: 475
450933 ATATTGAAGA
* * * *
450943 ATACATGATATTGATGCTTTGGTTTCACTAA-AAAGGGTTTTTCCCACAAACTTTTGTAAAGTCA
1 ATACATGATATTGATGCTTTGGTTTCAC-AAGAAAGGCTTTTTTCCACCAACTTTTGTAAAGTCT
* * * * *
451007 AATTTCATGCCTCAAACGAGCCAAACATGGATTTTAGTAATGATCTTCATTCATTTTGCGATTAG
65 AAGTTCATGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAG
* * * * * *
451072 GCACTATAAACACATTCTTCTCATTTCA-ACAAATGACAATGA-GAATTTTCTTTTGCATGGAAA
130 GCACTATAAACACATTCTCCTCA-TTAAGATAAAAGATATTGATG-ATTTTCTTTTGCATGGAAA
* *
451135 TCTTTTCTTTGCCCTGTTTTTCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTC
193 TCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTC
* * *
451200 TCGTAACAGTCTCCATT-TTTCTCTAGATTAGGAACCAAAAACACATTCTCATCATTAGGATACA
258 TCGTAACAGTCTCCATTCTTT-TCAAGATTAGGAACCAAAAACACATTCCCTTCATTAGGATACA
* * * * * *
451264 TGATATTGATGCTTTGGGGTCGCAAGAAATGCTTTTCTCTCTC-CCATATTTGAAAGAATCAAAG
322 TGACATTGATGCTTTGGGGTTGCAAAAAATGCTTTTCT-TTTCACCATTTTTGATAGAATCAAAG
* * * *
451328 TTTGTCTCTTAAAAAAGACAAACATGAATAGTTATACTAATCCCAATTCTTTTCAGGATTAAGCA
386 TTTGTCTCTTAAATAAGACAAACATGAATAGTCATACTAATCCCCATTCTTTTCAGGATTAGGCA
* *
451393 TCATAAACATAGTCTTCTCGTAAGG
451 TCATAAACATAGTCTTCTCATTAGG
* * *
451418 ATAC--GATACTT-ATGTTTTGGTTTCAAAAGAAAGGCTTTCTTTCCACCAACTTTTGTAAAGCC
1 ATACATGATA-TTGATGCTTTGGTTTCACAAGAAAGGCTTT-TTTCCACCAACTTTTGTAAAGTC
* * *
451480 TAAGTTCGTGCCTCAATTGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTAATTA
64 TAAGTTCATGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATT-
* *
451545 AGG-ACTATAAACACAATCTCCTCATTAA-AGTAAAAGAGATTGATGATTTTCTTTT-CATGGAA
128 AGGCACTATAAACACATTCTCCTCATTAAGA-TAAAAGATATTGATGATTTTCTTTTGCATGGAA
* * *
451607 ATCTTTTCTTTGCCCTATTTTCCTTAAAATCAACA-TTTATCCCTTAAATAAGGCAAGCATCAAT
192 ATCTTTTCTTTGCCCTATTTTCCTTAAAATCAA-AGTTCATCCCTTAAATAAGACAAGCATCGAT
* * * * * *
451671 TCTCGTAATAGTTTCTATTCTTATCAAGATTAGGAGCCAAAAACACATTCCCTTCATTAAGATAC
256 TCTCGTAACAGTCTCCATTCTTTTCAAGATTAGGAACCAAAAACACATTCCCTTCATTAGGATAC
* * * * *
451736 ATGACATTGATGCTTTGGTGTCGCAAAAAA--CTTTTCTTTGCAACGTTTTTGATAGAATCAAAG
321 ATGACATTGATGCTTTGGGGTTGCAAAAAATGCTTTTCTTTTCACCATTTTTGATAGAATCAAAG
* * ** **
451799 TTGGTCTCCTAAATAAGACAAACACAAATAGTCAGGCTAAT-CCCATTCTTTTCAGGATTAGGCA
386 TTTGTCTCTTAAATAAGACAAACATGAATAGTCATACTAATCCCCATTCTTTTCAGGATTAGGCA
*
451863 TCATAAACATAGTCTTCTTATTAGG
451 TCATAAACATAGTCTTCTCATTAGG
* * *
451888 ATACATGATATTGATGCTTTGGATTT-GCAAGGAAGGCTTTTTTCCCACTAACTTTTGTAAAGTC
1 ATACATGATATTGATGCTTTGG-TTTCACAAGAAAGGCTTTTTT-CCACCAACTTTTGTAAAGTC
* * *
451952 TAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCTTTCATTTTGTCATTA
64 TAAGTTCATGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTA
* * *
452017 GGCACTATAAACATATTCTCCTCATTAGGATAAAAGATATTGATGATTTT-TTTTGCATGAAAAT
129 GGCACTATAAACACATTCTCCTCATTAAGATAAAAGATATTGATGATTTTCTTTTGCATGGAAAT
* * * *
452081 CTTTTATTTGCCCTATTTTCCTTAAAATCAATGTTCATCCCTTAATTAAGACAAGAATCGATTCT
194 CTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCT
* * ** * * *
452146 TGTAGCAGTCTCCAAGCTTTTCAAAGATT-GTGGACCAAAAACATATTCCCTTTATTAGGATACA
259 CGTAACAGTCTCCATTCTTTTC-AAGATTAG-GAACCAAAAACACATTCCCTTCATTAGGATACA
* * ***
452210 TGACATTGATGCTTTGGTG-T-CACAAAATGCTTTTCTTTTCAATGTTTTTGATAGAATCAAAGT
322 TGACATTGATGCTTTGGGGTTGCAAAAAATGCTTTTCTTTTCACCATTTTTGATAGAATCAAAGT
* * * * * *
452273 TTATCTCTTAAATAAGACAAACATTAATAGTCATTCTAATCCCCATTCTTTTTAGGATTCGGCAA
387 TTGTCTCTTAAATAAGACAAACATGAATAGTCATACTAATCCCCATTCTTTTCAGGATTAGGCAT
* *
452338 CATAAACAAAGTCTTCTCATCAGG
452 CATAAACATAGTCTTCTCATTAGG
* * * * *
452362 ATACATGATATTGATG-TTTATGATTCGCAAGAAAGGCTTTTTTTCCACCAAATTTAGTAAAGTC
1 ATACATGATATTGATGCTTT-GGTTTCACAAGAAAGGC-TTTTTTCCACCAACTTTTGTAAAGTC
* * *
452426 TAAGTTCATGCCTCAAACGAGACAAACATAGATTCTAGTAATAATCTTCATTCATTTTGTGATTA
64 TAAGTTCATGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTA
* *
452491 GGCACTATAAACACATTCTCCTCATTAGGATAAAAGATATTGATGATTTTCTTTTCCATGGAAAT
129 GGCACTATAAACACATTCTCCTCATTAAGATAAAAGATATTGATGATTTTCTTTTGCATGGAAAT
*
452556 CTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCAGCCCTTAAATAAGACAAGCATCGATTCT
194 CTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCT
* * * *
452621 CGTAACAGTCTCCATTCTTTTCAATATTGGGAACCAAGAAA-AAATTCCCTTCATTAGGATAAAT
259 CGTAACAGTCTCCATTCTTTTCAAGATTAGGAACCAA-AAACACATTCCCTTCATTAGGATACAT
* *
452685 GACATTAATGCTTTGGGGGTTGCAAAAAATGCTTTTCTTTTCACCATTTTTGATAGAATGAAAGT
323 GACATTGATGCTTT-GGGGTTGCAAAAAATGCTTTTCTTTTCACCATTTTTGATAGAATCAAAGT
* * * ** * * *
452750 TTGTCTCTTAAATAAGATAAACATGAATAGTCTTGCTAATCCTAATTCTTTTTAGGATTTGGCAC
387 TTGTCTCTTAAATAAGACAAACATGAATAGTCATACTAATCCCCATTCTTTTCAGGATTAGGCAT
* *
452815 CATAAACATAGTCTTCTTATGAGG
452 CATAAACATAGTCTTCTCATTAGG
* * * * * * *
452839 ATACACGATATTGATGCTTTGGTTTCAAAAAAAAGGCTTTCTTCCTCTAATTTTTGTAAAGTCTA
1 ATACATGATATTGATGCTTTGGTTTCACAAGAAAGGCTTTTTTCCACCAACTTTTGTAAAGTCTA
* * *
452904 AGTTCATGCCTCAAATGAGCCAAACAAGGATTCTAGTAATGATCTTCATTCATTTTGGGATTAGG
66 AGTTCATGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGG
* * *
452969 CATTATAAACACATTCTCCTTATTAA-AGTAAAAGGTATTGATGATTTTCTTTTGCATGGAAATC
131 CACTATAAACACATTCTCCTCATTAAGA-TAAAAGATATTGATGATTTTCTTTTGCATGGAAATC
* * *
453033 TTTTCTTTGTCCTATTTTCCTTAAAATCAATA-TTTATCCCTTAAATAAGGCAAGCATCGATTCT
195 TTTTCTTTGCCCTATTTTCCTTAAAATCAA-AGTTCATCCCTTAAATAAGACAAGCATCGATTCT
* * ** *
453097 CGTAATAGTTTCCATTCTTTTCACTATTAGGAACCAAAAACACATTCCCTTCATTAAGATACATG
259 CGTAACAGTCTCCATTCTTTTCAAGATTAGGAACCAAAAACACATTCCCTTCATTAGGATACATG
* * * * *
453162 ACATTGATGCTTTGGTGTTGCAAGAAAA-GCTTTTTTTTTC-CAACTTTTTCAAAAGAATCAAAG
324 ACATTGATGCTTTGGGGTTGCAA-AAAATGCTTTTCTTTTCACCA-TTTTT-GATAGAATCAAAG
* *
453225 TTTGTCTCTTAAAT-AGAACAAACATGAATACTCATATTAATCCCCATTCTTTTCAGGATTAGGC
386 TTTGTCTCTTAAATAAG-ACAAACATGAATAGTCATACTAATCCCCATTCTTTTCAGGATTAGGC
* * *
453289 ATCGTAAACATAGTCTTCTCGTTCGG
450 ATCATAAACATAGTCTTCTCATTAGG
* * * *
453315 ATACATGATATTAATGCTTTGGTTTCGCAAGAAAGGTTTTTTTCCACCAATTTTTGTAAAGTCTA
1 ATACATGATATTGATGCTTTGGTTTCACAAGAAAGGCTTTTTTCCACCAACTTTTGTAAAGTCTA
* * * * * ** *
453380 AGTTCGTGCCTCAATTGAGACAAACATGGATTCTGGCAATGATTTTCATTCATTTTACGATTGGG
66 AGTTCATGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGG
* * * * **
453445 CATTATAAACACATTATCCTCATTAGGATAAAAGATATTGATGATTTTCTTTTGCCTAAAAATCT
131 CACTATAAACACATTCTCCTCATTAAGATAAAAGATATTGATGATTTTCTTTTGCATGGAAATCT
* * * *
453510 TTTCTCTGCCCTATTTTCCTTAAAATCAATGTTCATCCTTTAAATAAGACAAGCATCGATTCCCG
196 TTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCG
* * * * * * * *
453575 TAAGAGTCTCCATTCTTTTCAAAATTGGGAACCAAAAGCACATTTCTTTCATTAGGACAAATGAC
261 TAACAGTCTCCATTCTTTTCAAGATTAGGAACCAAAAACACATTCCCTTCATTAGGATACATGAC
* * * * *
453640 ATTAATGCTTTGGGGTTGCAAGAAATGTTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGT
326 ATTGATGCTTTGGGGTTGCAAAAAATGCTTTTCTTTTCACCATTTTTGATAGAATCAAAGTTTGT
* * * ** * * *
453705 CGCTTAAATAAGACAAACATGAATACTCAAACTAAT-GTCATTCTTTTGAGGATTTGGCACCATA
391 CTCTTAAATAAGACAAACATGAATAGTCATACTAATCCCCATTCTTTTCAGGATTAGGCATCATA
*
453769 AACA-AGTTTTCTCATTAGG
456 AACATAGTCTTCTCATTAGG
* *
453788 ATACATGATATTGATGCTTTGGTTTCACCAA-AAAGGCTTTTTGCCA-CAAATTTTGTAAAGTCT
1 ATACATGATATTGATGCTTTGGTTTCA-CAAGAAAGGCTTTTTTCCACCAACTTTTGTAAAGTCT
* * * *
453851 AAGTTTGAT-CCTCAAATGTGACAAACATGGATT-TCCGTAATGATGTTCATTCATTTTGTGATT
65 AAG-TTCATGCCTCAAATGAGACAAACATGGATTCT-AGTAATGATCTTCATTCATTTTGTGATT
* ** ** *
453914 AGGCACTATAAACACATTCTCTTCATTGCGATAATTGATATTGATGATTTCCTTTTGCATGGAAA
128 AGGCACTATAAACACATTCTCCTCATTAAGATAAAAGATATTGATGATTTTCTTTTGCATGGAAA
*
453979 TCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTCCATCCCTTAAATA
193 TCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATA
454028 GGAGAAACAT
Statistics
Matches: 2254, Mismatches: 308, Indels: 99
0.85 0.12 0.04
Matches are distributed among these distances:
470 49 0.02
471 76 0.03
472 387 0.17
473 353 0.16
474 387 0.17
475 191 0.08
476 663 0.29
477 145 0.06
478 3 0.00
ACGTcount: A:0.32, C:0.18, G:0.14, T:0.37
Consensus pattern (475 bp):
ATACATGATATTGATGCTTTGGTTTCACAAGAAAGGCTTTTTTCCACCAACTTTTGTAAAGTCTA
AGTTCATGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGG
CACTATAAACACATTCTCCTCATTAAGATAAAAGATATTGATGATTTTCTTTTGCATGGAAATCT
TTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCG
TAACAGTCTCCATTCTTTTCAAGATTAGGAACCAAAAACACATTCCCTTCATTAGGATACATGAC
ATTGATGCTTTGGGGTTGCAAAAAATGCTTTTCTTTTCACCATTTTTGATAGAATCAAAGTTTGT
CTCTTAAATAAGACAAACATGAATAGTCATACTAATCCCCATTCTTTTCAGGATTAGGCATCATA
AACATAGTCTTCTCATTAGG
Found at i:454410 original size:416 final size:410
Alignment explanation
Indices: 453682--454443 Score: 967
Period size: 416 Copynumber: 1.8 Consensus size: 410
453672 CTTTCCACCG
* * **
453682 TTTTTGATAGAATCAAAGTTTGTCGCTTAAATAAGACAAACATGAATACTCAAACTAATGTCATT
1 TTTTTGATAGAATCAAAGTTTCTCGCTTAAATAAGACAAACATGAATACACAAACTAATCCCATT
* * * * * *
453747 CTTTTGAGGATTTGGCACCATAAACAAGTTTTCTCATTAGGATACATGATATTGATGCTTTGGTT
66 CTTTTCAGGATTAGGCACCACAAACAAGTTTTCTCATAAGGATACACGATATTGATGCTCTGGTT
* * *
453812 TCACCAAAAAGGCTTTTTGCCACAAATTTTGTAAAGTCTAAGTTTGATCCTCAAATGTGACAAAC
131 TCA-CAAAAAGGCTTTTTCCCACAAATTTTATAAAGTCTAAGTTTGATCCTCAAATGAGACAAAC
* * ** * * * * * *
453877 ATGGATTTCCGTAATGATGTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCTTCATTG
195 ATAGATTTCAGTAAAAATCTACATTAATTTTGTGATTAGGCACTACAAACACATGCTCCTCATTG
** *
453942 CGATAATTGATATTGATGATTTCCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAA
260 CGATAATTGATATTGATGATTTCCTTTTGCACAGAAATATTTTCTTTGCCCTATTTTCCTTAAAA
454007 TCAAAGTCCATCCCTTAAATAGGAGAAACATCAATTCTTTGCATTGAAGCTTTGGTGTCACAAGA
325 TCAAAGTCCATCCCTTAAATAGGAGAAACATCAATTCTTTGCATTGAAGCTTTGGTGTCACAAGA
454072 AAAGCTTTTCTTTGCAACGTT
390 AAAGCTTTTCTTTGCAACGTT
* * * * * *
454093 TTTTTTATAGAATCGAAGTTTCTCTCTTAAATCAGACCAAACATGAGTACACATACTAATCCCAA
1 TTTTTGATAGAATCAAAGTTTCTCGCTTAAATAAGA-CAAACATGAATACACAAACTAATCCC-A
* *
454158 TTCTTTTCAGGATTAGGCATCACAAACATAGTTTTCTTATAAGGATACACGATATTGATGCTCTG
64 TTCTTTTCAGGATTAGGCACCACAAACA-AGTTTTCTCATAAGGATACACGATATTGATGCTCTG
* *
454223 GTTTCGA-AAGAAAGGCTTTCTTCCCACCAATTTTTATAAATTCTAAGTTT-ATGCCTCAAATGA
128 GTTTC-ACAA-AAAGGCTTT-TTCCCA-CAAATTTTATAAAGTCTAAGTTTGAT-CCTCAAATGA
* * *
454286 GCCAAACATAGA-TTCTAGTAAAAATCTACATTAATTTTTTGATTAGGCACTACAAACACGTGCT
188 GACAAACATAGATTTC-AGTAAAAATCTACATTAATTTTGTGATTAGGCACTACAAACACATGCT
* **
454350 CCTCATTAG-GATAA-TGATATTGATGTTTTTTTTTTTGCACAGAAATATTTTCTTTGCCCTATT
252 CCTCATT-GCGATAATTGATATTGATG-ATTTCCTTTTGCACAGAAATATTTTCTTTGCCCTATT
* * * *
454413 TTCCTTAAACTCAATGTTCATCGCTTAAATA
315 TTCCTTAAAATCAAAGTCCATCCCTTAAATA
454444 AGGTAAGGAT
Statistics
Matches: 294, Mismatches: 46, Indels: 17
0.82 0.13 0.05
Matches are distributed among these distances:
411 31 0.11
412 21 0.07
413 27 0.09
414 46 0.16
415 22 0.07
416 146 0.50
417 1 0.00
ACGTcount: A:0.31, C:0.18, G:0.14, T:0.37
Consensus pattern (410 bp):
TTTTTGATAGAATCAAAGTTTCTCGCTTAAATAAGACAAACATGAATACACAAACTAATCCCATT
CTTTTCAGGATTAGGCACCACAAACAAGTTTTCTCATAAGGATACACGATATTGATGCTCTGGTT
TCACAAAAAGGCTTTTTCCCACAAATTTTATAAAGTCTAAGTTTGATCCTCAAATGAGACAAACA
TAGATTTCAGTAAAAATCTACATTAATTTTGTGATTAGGCACTACAAACACATGCTCCTCATTGC
GATAATTGATATTGATGATTTCCTTTTGCACAGAAATATTTTCTTTGCCCTATTTTCCTTAAAAT
CAAAGTCCATCCCTTAAATAGGAGAAACATCAATTCTTTGCATTGAAGCTTTGGTGTCACAAGAA
AAGCTTTTCTTTGCAACGTT
Found at i:455409 original size:476 final size:475
Alignment explanation
Indices: 454048--457038 Score: 3208
Period size: 474 Copynumber: 6.3 Consensus size: 475
454038 CAATTCTTTG
* * * * *
454048 CATTGAAGCTTTGGTGTCACAAGAAAAGCTTTTCTTTGCAACGTTTTTTTTATAGAATCGAAGTT
1 CATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCAACG--TTTTTGATAGAATCAAAGTT
* * * * * *
454113 TCTCTCTTAAATCAGACCAAACATGAGTACACATACTAATCCCAATTCTTTTCAGGATTAGGCAT
64 TGTCTCTTAAATAAGA-CAAACATGAATACTCATACTAATCCCTATTCTTTTCAGGATTAGGCAC
* * * * * *
454178 CACAAACATAGTTTTCTTATAAGGATACACGATATTGATGCTCTGGTTTCGA-AAGAAAGGCTTT
128 CACAAACATAGTCTTCTCATTAGGATACATGATATTGATGCTTTGGTTTC-ACCAGAAAGGCTTT
* * ** * * *
454242 CTTCCCACCAATTTTTATAAAT-TCTAAGTTTATGCCTCAAATGAGCCAAACATAGATTCTAGTA
192 -TTCCCACAAATTTTTAT-AATGTCTAAGTTCAACCCTCAAATGAGACAAACATGGATTCCAGTA
** * * * * * *
454306 AAAATCTACATTAATTTTTTGATTAGGCACTACAAACACGTGCTCCTCATTAGGAT-AATGATAT
255 ATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGATAT
* * ** * * *
454370 TGATGTTTTTTTTTTTGCACAGAAATATTTTCTTTGCCCTATTTTCCTTAAACTCAATGTTCATC
320 TGATG-ATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATC
** * * * * *
454435 GC-TTAAATAAGGTAAGGATTAATTCTCGTAACAGTCTCCAAT-CTTTTCAAGATTGGGAGCTAA
384 -CTTTAAATAAGACAAGCATCAATTCTCGTAATAGTCTCCAATCCTTTTCAAGATTGGGAACCAA
** * *
454498 AAACACATTCTTTTCTTTAGGATAAATGA
448 AAACATTTTCCTTTATTT-GGATAAATGA
* * * * *
454527 AATTGATGCTTTGGGGTCGCAAGAAATGCTTTTTTTTCCAGCGTTTTTGATAGAATCAAAGTTTG
1 CATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCAACGTTTTTGATAGAATCAAAGTTTG
* * * *
454592 TCTCCTAAAAAAGACAAATATGAATACTCATACTAATCCCCATTCTTTTCAAGG-TTAGGCACCA
66 TCTCTTAAATAAGACAAACATGAATACTCATACTAATCCCTATTCTTTTC-AGGATTAGGCACCA
* * * *
454656 CAAACATAGTCTTTTCATTATGATACATGATATGGATGCTTTGGTTTCACCAGAAAGGCTTTTTT
130 CAAACATAGTCTTCTCATTAGGATACATGATATTGATGCTTTGGTTTCACCAGAAAGGCTTTTTC
* * * * ** * * *
454721 CCACAAATTTTTGTAATATTTAATTTTGACCCTC-AATGAGAAAAACATAGATTCTAGTAATGAT
195 CCACAAATTTTTATAATGTCTAAGTTCAACCCTCAAATGAGACAAACATGGATTCCAGTAATGAT
* * * * *
454785 CTTCACTCATTTTGTGATTAGGTACTATAAACACACTCTCCTCATTAGGATAAATGATATTAATA
260 CTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGATATTGATG
* * * * * *
454850 ATTTTCTTTTGAATGAAAATCTTTTCTTTGACCTATTTTTCTTAAAATTAAAGTTCATCCCTTAA
325 ATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCTTTAA
* * * * * *
454915 ATAGGAGAAGCATCAATTCTCATAATAGTCTCCATTCCTTTT-AGGATTGGGAACTAAAAACATT
390 ATAAGACAAGCATCAATTCTCGTAATAGTCTCCAATCCTTTTCAAGATTGGGAACCAAAAACATT
** *
454979 TTCCCTTTATTTGGATATGTGT
455 TT-CCTTTATTTGGATAAATGA
455001 CATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCAACGTTTTTGATAGAATCAAAGTTTG
1 CATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCAACGTTTTTGATAGAATCAAAGTTTG
* * *
455066 TCTCTTAAATAAGTCAAAAATGAATACTCATACTAATCCCTATTCTTTTTCAGGGTTAGGCACCA
66 TCTCTTAAATAAGACAAACATGAATACTCATACTAATCCCTATTC-TTTTCAGGATTAGGCACCA
** * * *
455131 CAAACATAAACATCTCATTAGGATACATGATATTGAAGCTTTGGATTCACCAGAAAGGCTTTTTC
130 CAAACATAGTCTTCTCATTAGGATACATGATATTGATGCTTTGGTTTCACCAGAAAGGCTTTTTC
* ** *
455196 CCACAAATTTTTATAATGTCTAAGGTCAAATCTCAAATGAGATAAACATGGATTCCAGTAATGAT
195 CCACAAATTTTTATAATGTCTAAGTTCAACCCTCAAATGAGACAAACATGGATTCCAGTAATGAT
* *
455261 CTTCATTCATTTTGTGATTGGGCACTATAAACACATTCTCCTCATTAGGATAAAAGATATTGATG
260 CTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGATATTGATG
*
455326 TTTTTCTTTTGCATGGAAATC-TTTCTTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCTTTA
325 ATTTTCTTTTGCATGGAAATCTTTTC-TTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCTTTA
* * * * * ** *
455390 AAGAAGACCAGCATCAATTCTCGTAATAGTTTCCAA-GCTTTTTAGAGATTATGAACCATAAACA
389 AATAAGACAAGCATCAATTCTCGTAATAGTCTCCAATCCTTTTCA-AGATTGGGAACCAAAAACA
* * **
455454 TATTTCCTTCATTCGGATGCATGA
453 T-TTTCCTTTATTTGGATAAATGA
* * ** * * * *
455478 CGTTGATGCCTTAGG-GTTACAAAAAAAGCTTTTCTTTACAACATTTTTTATAGAATCAAAGTTT
1 CATTGATG-CTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCAACGTTTTTGATAGAATCAAAGTTT
* * ** *
455542 GTCTCTTAAATAAGACAAACATGAGTACTCAAACTAA-CCCTATTTCTTTTCAGGATTACACATC
65 GTCTCTTAAATAAGACAAACATGAATACTCATACTAATCCCTA-TTCTTTTCAGGATTAGGCACC
* * * * * * * * * **
455606 ACAAAAATAGTTTTCTTATAAGGATACACGTTATTGATGCTCTAGTCTCAAAAGAAAGGCTTTCT
129 ACAAACATAGTCTTCTCATTAGGATACATGATATTGATGCTTTGGTTTCACCAGAAAGGCTTT-T
* * *** **
455671 TCCC-CTTAATTTTTATAAAGTCTAAGTTCGTGCCTCAAATGA-ACCAACACATGGATTCTTGTA
193 TCCCAC-AAATTTTTATAATGTCTAAGTTCAACCCTCAAATGAGA-CAA-ACATGGATTCCAGTA
* * * * * *
455734 AAGATCTTCATTCATTTCGTGACTAAGCATTATAAACACATTCTCCTCATTAGGAT-AATGATAC
255 ATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGATAT
* ** * * * * *
455798 TGTTGATTTTCTTTTGCATAAAAATCTTTTCTTTACCCTATTTTTCTTAAAATGAATGTTCTTCG
320 TGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATC-
* * * * * *
455863 C-TTAAATTAGGCAAGGATCAATTCTCGTAATAATCTCCAAT-CTTTTCAAGATAGGGAACTAAA
384 CTTTAAATAAGACAAGCATCAATTCTCGTAATAGTCTCCAATCCTTTTCAAGATTGGGAAC--CA
* *
455926 AAAACATTTT-TTTTCATTAGGATAAATGA
447 AAAACATTTTCCTTT-ATTTGGATAAATGA
* * * * *
455955 CATTGATGCTTTCGG-GTCGTAAGAAATGCTTTTCTTTCCAACATTTTTTATATAATCAAAGTTT
1 CATTGATGCTTT-GGTGTCGCAAGAAAAGCTTTTCTTTCCAACGTTTTTGATAGAATCAAAGTTT
** * * *
456019 GTCTCCAAAATGAGACAAACGTGAATACTAATACTAATCCCTATTCTTTTCAAGG-TTAGGCACC
65 GTCTCTTAAATAAGACAAACATGAATACTCATACTAATCCCTATTCTTTTC-AGGATTAGGCACC
* * *
456083 ACAAACATAGTTTTCTCATTAGGATACATGATATGGATGCTTTGGTTTCACCAAAAAGGCTTTTT
129 ACAAACATAGTCTTCTCATTAGGATACATGATATTGATGCTTTGGTTTCACCAGAAAGGCTTTTT
* * * * * *
456148 CCCACAAATTTTTGTAATGTCTAATTTCGACCCTCAAATGAGAGAATCATGGATTCCAGTAATTA
194 CCCACAAATTTTTATAATGTCTAAGTTCAACCCTCAAATGAGACAAACATGGATTCCAGTAATGA
* * *
456213 TCTTTATTCATTTTGTGATTAGGTACTATAAACACATTATCCTCATTAGGATAAATGATATTGAT
259 TCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGATATTGAT
* * *
456278 GATTTTCTTTTGCATGGAAATCTTTTCTTTGACCTA-TTGCCATAAAATCAAAGTTCATCCTTTA
324 GATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCTTTA
* * * * * * * * *
456342 AATAAGAGAAGCATTAATTCTCGTAACAGTCTTC-ATTCTTTTTAAGAATGAGAACCAAAAACAC
389 AATAAGACAAGCATCAATTCTCGTAATAGTCTCCAATCCTTTTCAAGATTGGGAACCAAAAACAT
**
456406 TTTCCTTTCATTTGGATATGTGA
454 TTTCCTTT-ATTTGGATAAATGA
* * *
456429 CATTGATGCTTTGGTGTCGCAAGAAAATCTTTTCTTTCCAACGTTTTTGATCGAATCACAGTTTG
1 CATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCAACGTTTTTGATAGAATCAAAGTTTG
* * * * * * * *
456494 TCTTTTAAATAAGACAAACATGAACACTCAAACTAATCCCTATTATTTTTAGGCTTTGGTACCAC
66 TCTCTTAAATAAGACAAACATGAATACTCATACTAATCCCTATTCTTTTCAGGATTAGGCACCAC
* * * *
456559 AAACAT-GATCTTCTCATTAGGATACATGATATTGATCCTTTGCTTTCACTAGAAAGGCTTTTCC
131 AAACATAG-TCTTCTCATTAGGATACATGATATTGATGCTTTGGTTTCACCAGAAAGGCTTTTTC
* * **
456623 CCACAAATTTTTGTAATGCCTAAGTTCAATTCTCAAATGAGACAAACATGGATTCCAGTAATGAT
195 CCACAAATTTTTATAATGTCTAAGTTCAACCCTCAAATGAGACAAACATGGATTCCAGTAATGAT
* * * * *
456688 CTTCAGTCATTTTGTGATTGGGCACTATAAACATATTCTCCTCATTAGGATAAAAGATTTTGATG
260 CTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGATATTGATG
*
456753 ATTTTCTTTTGCATGGAGATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCTTTAA
325 ATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCTTTAA
* * * * * * *
456818 ATACGACAAGTACCAATTCTCGTAATAGTTTCCAA-GCTTTTCAAAGATTGTGAACCAAAAGCAT
390 ATAAGACAAGCATCAATTCTCGTAATAGTCTCCAATCCTTTTC-AAGATTGGGAACCAAAAACAT
* * **
456882 ATTTCCTTCATTAGGATGCATGA
454 -TTTCCTTTATTTGGATAAATGA
* * * * * *
456905 CAATGATGATTTGGTGTC-TAAGAAAAGCTTTTCTTTGCAACGTTTTTTTCATAGAATCAAAATT
1 CATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCAACG--TTTTTGATAGAATCAAAGTT
* * * *
456969 TGTCTCTTAAATAAGACAAACATGAGTACTCATACT-ATCCCCAATTCTTTTCAAGATTAGGCAT
64 TGTCTCTTAAATAAGACAAACATGAATACTCATACTAAT-CCCTATTCTTTTCAGGATTAGGCAC
457033 CACAAA
128 CACAAA
457039 TGTAGACAGC
Statistics
Matches: 2079, Mismatches: 388, Indels: 92
0.81 0.15 0.04
Matches are distributed among these distances:
473 17 0.01
474 603 0.29
475 351 0.17
476 465 0.22
477 517 0.25
478 91 0.04
479 35 0.02
ACGTcount: A:0.32, C:0.18, G:0.13, T:0.37
Consensus pattern (475 bp):
CATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCAACGTTTTTGATAGAATCAAAGTTTG
TCTCTTAAATAAGACAAACATGAATACTCATACTAATCCCTATTCTTTTCAGGATTAGGCACCAC
AAACATAGTCTTCTCATTAGGATACATGATATTGATGCTTTGGTTTCACCAGAAAGGCTTTTTCC
CACAAATTTTTATAATGTCTAAGTTCAACCCTCAAATGAGACAAACATGGATTCCAGTAATGATC
TTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGATATTGATGA
TTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCTTTAAA
TAAGACAAGCATCAATTCTCGTAATAGTCTCCAATCCTTTTCAAGATTGGGAACCAAAAACATTT
TCCTTTATTTGGATAAATGA
Found at i:457470 original size:62 final size:62
Alignment explanation
Indices: 457363--458012 Score: 921
Period size: 62 Copynumber: 10.5 Consensus size: 62
457353 TCACCTTCAA
* * * * *
457363 TCCTCAAAGAGCAAGATGCCTTTTCCTTTT-AAAGCCCACACAAGTTGGTGGCACCCTTGAG
1 TCCTCAAAGAGCAGGACGCCTTTTTCTTTTCAAAGCCCACACAAGTTGGTGGCACCTTTTAG
* * *
457424 TCATTAAAGAGCAGGACGCCTTTTTCTTTTCAAAGCCTACACAAGTTGGTGGCACCTTTTAG
1 TCCTCAAAGAGCAGGACGCCTTTTTCTTTTCAAAGCCCACACAAGTTGGTGGCACCTTTTAG
* * * *
457486 TCTTCAAAGAGCAGGATGCCTTTTCCTTTT-AAAGCCCACACAAGTTGGTGGCACCTCTTAG
1 TCCTCAAAGAGCAGGACGCCTTTTTCTTTTCAAAGCCCACACAAGTTGGTGGCACCTTTTAG
* *
457547 TCCTCAAAGAGTAGGACGCC-TTTTCCTTTCGAAA-CCCACACAAGTTGGTGGCACCTTTCTAG
1 TCCTCAAAGAGCAGGACGCCTTTTTCTTTTC-AAAGCCCACACAAGTTGGTGGCACCTTT-TAG
* * * *
457609 TCCTCAAAAAGCAGGACACCTTTTTTTTTTCAAAGCCCACACAAGTTGGTGGCACCTCTTAG
1 TCCTCAAAGAGCAGGACGCCTTTTTCTTTTCAAAGCCCACACAAGTTGGTGGCACCTTTTAG
* *
457671 TCCTCAAAGAGCAGGACACCTTTTTCTTTTCAAAGCCCACACAAGCTGGTGGCACCTTTTAG
1 TCCTCAAAGAGCAGGACGCCTTTTTCTTTTCAAAGCCCACACAAGTTGGTGGCACCTTTTAG
* * *
457733 TCCTCAAAGAGCAGGACGCCTTTTTCTTTTCGATGCTCACACAAGTTGGTGGCACCTTTCTAG
1 TCCTCAAAGAGCAGGACGCCTTTTTCTTTTCAAAGCCCACACAAGTTGGTGGCACCTTT-TAG
* *
457796 TCCTCAAAGAGCAGGACACCTTTTTCTTTTCAAAGCCCACACAAGCTGGTGGCACCTTTTAG
1 TCCTCAAAGAGCAGGACGCCTTTTTCTTTTCAAAGCCCACACAAGTTGGTGGCACCTTTTAG
* * *
457858 TCCTCAAAGAGCAGGATGCCTTTTTCTTTTCGATGCCCACACAAGTTGGTGGCACCTTTCTAG
1 TCCTCAAAGAGCAGGACGCCTTTTTCTTTTCAAAGCCCACACAAGTTGGTGGCACCTTT-TAG
* * *
457921 TCCTCAAAGAGCAGGACACCTTTTTCTTTTCAAAGCCCACACAAGTTGGTGACACCTCTTAG
1 TCCTCAAAGAGCAGGACGCCTTTTTCTTTTCAAAGCCCACACAAGTTGGTGGCACCTTTTAG
* * * *
457983 TTCTCAAAGAGCATGATGCTTTTTTCTTTT
1 TCCTCAAAGAGCAGGACGCCTTTTTCTTTT
458013 TTCCTTTACC
Statistics
Matches: 525, Mismatches: 56, Indels: 15
0.88 0.09 0.03
Matches are distributed among these distances:
60 7 0.01
61 94 0.18
62 280 0.53
63 144 0.27
ACGTcount: A:0.25, C:0.27, G:0.18, T:0.30
Consensus pattern (62 bp):
TCCTCAAAGAGCAGGACGCCTTTTTCTTTTCAAAGCCCACACAAGTTGGTGGCACCTTTTAG
Found at i:457815 original size:125 final size:124
Alignment explanation
Indices: 457363--458012 Score: 948
Period size: 125 Copynumber: 5.2 Consensus size: 124
457353 TCACCTTCAA
* * * * *
457363 TCCTCAAAGAGCAAGATGCCTTTTCCTTTT-AAAGCCCACACAAGTTGGTGGCACCCTTGAGTCA
1 TCCTCAAAGAGCAGGATGCCTTTTTCTTTTCAAAGCCCACACAAGTTGGTGGCACCTTTTAGTCC
* * *
457427 TTAAAGAGCAGGACGCCTTTTTCTTTTCAAAGCCTACACAAGTTGGTGGCACCTTTTAG
66 TCAAAGAGCAGGACACCTTTTTCTTTTCAAAGCCCACACAAGTTGGTGGCACCTTTTAG
* * *
457486 TCTTCAAAGAGCAGGATGCCTTTTCCTTTT-AAAGCCCACACAAGTTGGTGGCACCTCTTAGTCC
1 TCCTCAAAGAGCAGGATGCCTTTTTCTTTTCAAAGCCCACACAAGTTGGTGGCACCTTTTAGTCC
* * *
457550 TCAAAGAGTAGGACGCC-TTTTCCTTTCGAAA-CCCACACAAGTTGGTGGCACCTTTCTAG
66 TCAAAGAGCAGGACACCTTTTTCTTTTC-AAAGCCCACACAAGTTGGTGGCACCTTT-TAG
* ** * *
457609 TCCTCAAAAAGCAGGACACCTTTTTTTTTTCAAAGCCCACACAAGTTGGTGGCACCTCTTAGTCC
1 TCCTCAAAGAGCAGGATGCCTTTTTCTTTTCAAAGCCCACACAAGTTGGTGGCACCTTTTAGTCC
*
457674 TCAAAGAGCAGGACACCTTTTTCTTTTCAAAGCCCACACAAGCTGGTGGCACCTTTTAG
66 TCAAAGAGCAGGACACCTTTTTCTTTTCAAAGCCCACACAAGTTGGTGGCACCTTTTAG
* * * *
457733 TCCTCAAAGAGCAGGACGCCTTTTTCTTTTCGATGCTCACACAAGTTGGTGGCACCTTTCTAGTC
1 TCCTCAAAGAGCAGGATGCCTTTTTCTTTTCAAAGCCCACACAAGTTGGTGGCACCTTT-TAGTC
*
457798 CTCAAAGAGCAGGACACCTTTTTCTTTTCAAAGCCCACACAAGCTGGTGGCACCTTTTAG
65 CTCAAAGAGCAGGACACCTTTTTCTTTTCAAAGCCCACACAAGTTGGTGGCACCTTTTAG
* *
457858 TCCTCAAAGAGCAGGATGCCTTTTTCTTTTCGATGCCCACACAAGTTGGTGGCACCTTTCTAGTC
1 TCCTCAAAGAGCAGGATGCCTTTTTCTTTTCAAAGCCCACACAAGTTGGTGGCACCTTT-TAGTC
* *
457923 CTCAAAGAGCAGGACACCTTTTTCTTTTCAAAGCCCACACAAGTTGGTGACACCTCTTAG
65 CTCAAAGAGCAGGACACCTTTTTCTTTTCAAAGCCCACACAAGTTGGTGGCACCTTTTAG
* * *
457983 TTCTCAAAGAGCATGATGCTTTTTTCTTTT
1 TCCTCAAAGAGCAGGATGCCTTTTTCTTTT
458013 TTCCTTTACC
Statistics
Matches: 486, Mismatches: 35, Indels: 10
0.92 0.07 0.02
Matches are distributed among these distances:
122 32 0.07
123 103 0.21
124 107 0.22
125 244 0.50
ACGTcount: A:0.25, C:0.27, G:0.18, T:0.30
Consensus pattern (124 bp):
TCCTCAAAGAGCAGGATGCCTTTTTCTTTTCAAAGCCCACACAAGTTGGTGGCACCTTTTAGTCC
TCAAAGAGCAGGACACCTTTTTCTTTTCAAAGCCCACACAAGTTGGTGGCACCTTTTAG
Found at i:457828 original size:187 final size:186
Alignment explanation
Indices: 457363--457995 Score: 932
Period size: 187 Copynumber: 3.4 Consensus size: 186
457353 TCACCTTCAA
* * * * * *
457363 TCCTCAAAGAGCAAGATGCCTTTTCCTTTT-AAAGCCCACACAAGTTGGTGGCACCCTTGAGTCA
1 TCCTCAAAGAGCAGGACGCCTTTTTCTTTTCAAAGCCCACACAAGTTGGTGGCACCTTTTAGTCC
* * * *
457427 TTAAAGAGCAGGACGCCTTTTTCTTTTCAAAGCCTACACAAGTTGGTGGCACCTTTTAGTCTTCA
66 TCAAAGAGCAGGACACCTTTTTCTTTTCAAAGCCCACACAAGTTGGTGGCACCTTTTAGTCCTCA
* *
457492 AAGAGCAGGATGCCTTTTCCTTTT-AAAGCCCACACAAGTTGGTGGCACCTCTTAG
131 AAGAGCAGGATGCCTTTTTCTTTTCAAAGCCCACACAAGTTGGTGGCACCTTTTAG
* *
457547 TCCTCAAAGAGTAGGACGCC-TTTTCCTTTCGAAA-CCCACACAAGTTGGTGGCACCTTTCTAGT
1 TCCTCAAAGAGCAGGACGCCTTTTTCTTTTC-AAAGCCCACACAAGTTGGTGGCACCTTT-TAGT
* * *
457610 CCTCAAAAAGCAGGACACCTTTTTTTTTTCAAAGCCCACACAAGTTGGTGGCACCTCTTAGTCCT
64 CCTCAAAGAGCAGGACACCTTTTTCTTTTCAAAGCCCACACAAGTTGGTGGCACCTTTTAGTCCT
** *
457675 CAAAGAGCAGGACACCTTTTTCTTTTCAAAGCCCACACAAGCTGGTGGCACCTTTTAG
129 CAAAGAGCAGGATGCCTTTTTCTTTTCAAAGCCCACACAAGTTGGTGGCACCTTTTAG
* * *
457733 TCCTCAAAGAGCAGGACGCCTTTTTCTTTTCGATGCTCACACAAGTTGGTGGCACCTTTCTAGTC
1 TCCTCAAAGAGCAGGACGCCTTTTTCTTTTCAAAGCCCACACAAGTTGGTGGCACCTTT-TAGTC
*
457798 CTCAAAGAGCAGGACACCTTTTTCTTTTCAAAGCCCACACAAGCTGGTGGCACCTTTTAGTCCTC
65 CTCAAAGAGCAGGACACCTTTTTCTTTTCAAAGCCCACACAAGTTGGTGGCACCTTTTAGTCCTC
* *
457863 AAAGAGCAGGATGCCTTTTTCTTTTCGATGCCCACACAAGTTGGTGGCACCTTTCTAG
130 AAAGAGCAGGATGCCTTTTTCTTTTCAAAGCCCACACAAGTTGGTGGCACCTTT-TAG
* * * *
457921 TCCTCAAAGAGCAGGACACCTTTTTCTTTTCAAAGCCCACACAAGTTGGTGACACCTCTTAGTTC
1 TCCTCAAAGAGCAGGACGCCTTTTTCTTTTCAAAGCCCACACAAGTTGGTGGCACCTTTTAGTCC
457986 TCAAAGAGCA
66 TCAAAGAGCA
457996 TGATGCTTTT
Statistics
Matches: 401, Mismatches: 41, Indels: 11
0.89 0.09 0.02
Matches are distributed among these distances:
183 7 0.02
184 40 0.10
185 86 0.21
186 49 0.12
187 163 0.41
188 56 0.14
ACGTcount: A:0.25, C:0.27, G:0.19, T:0.29
Consensus pattern (186 bp):
TCCTCAAAGAGCAGGACGCCTTTTTCTTTTCAAAGCCCACACAAGTTGGTGGCACCTTTTAGTCC
TCAAAGAGCAGGACACCTTTTTCTTTTCAAAGCCCACACAAGTTGGTGGCACCTTTTAGTCCTCA
AAGAGCAGGATGCCTTTTTCTTTTCAAAGCCCACACAAGTTGGTGGCACCTTTTAG
Found at i:460647 original size:50 final size:49
Alignment explanation
Indices: 460593--460723 Score: 145
Period size: 50 Copynumber: 2.6 Consensus size: 49
460583 TAAATTTCTA
* * *
460593 GATTTTTCATCTCAGGGATACTCTAACCCCGGCTTTATTTCTAAAATATT
1 GATTTTTCATCTCAGGGATACTCTAACCCCGG-TTTATTTCGAAAACATC
** * * *
460643 GATTTTTCATCTCAACGATACTCCAACCCCAGTTTTTTTCGAAAACATC
1 GATTTTTCATCTCAGGGATACTCTAACCCCGGTTTATTTCGAAAACATC
* * *
460692 AATTTTTCATAATCAGGGATACTCTAATCCCG
1 GATTTTTCAT-CTCAGGGATACTCTAACCCCG
460724 TTATGTCTGA
Statistics
Matches: 65, Mismatches: 15, Indels: 2
0.79 0.18 0.02
Matches are distributed among these distances:
49 22 0.34
50 43 0.66
ACGTcount: A:0.28, C:0.24, G:0.11, T:0.37
Consensus pattern (49 bp):
GATTTTTCATCTCAGGGATACTCTAACCCCGGTTTATTTCGAAAACATC
Found at i:460838 original size:79 final size:77
Alignment explanation
Indices: 460659--461031 Score: 315
Period size: 79 Copynumber: 4.7 Consensus size: 77
460649 TCATCTCAAC
* ** * * *
460659 GATACTCCAACCCC-AGTTTT-TTTCGAAAACATCAATTTTTCATAATCAGGGATACTCTAATCC
1 GATACTCCAACCCCGA-TTTTATTTCTAAAACATTGA-TTTTCACAATCAGGGATACTCCAACCC
*
460722 CGTTATGTCTGAGGG
64 CGTTAT-TTTGAGGG
* * ** ** * *
460737 GTTACCCCAACCTTGGCTTTATTTCTAAAATATTGATTTCTCGCAATCAGGGATACTCCAACCCC
1 GATACTCCAACCCCGATTTTATTTCTAAAACATTGATTT-TCACAATCAGGGATACTCCAACCCC
*
460802 GTTATTTTG-GCAAG
65 GTTATTTTGAG--GG
* * * * * * *
460816 GATACTCGAACCCCGGTCTTATTTTTAAAGCATCGATTTTTCACAATCGGGGATACTCCAACCCC
1 GATACTCCAACCCCGATTTTATTTCTAAAACATTGA-TTTTCACAATCAGGGATACTCCAACCCC
460881 GTTATTTTCGAGGG
65 GTTATTTT-GAGGG
** *
460895 GATACTCCAACCCCGATTTTATTT-TCAAAACGCTGATTTTCTATAATCAGGGATACTCCAACCC
1 GATACTCCAACCCCGATTTTATTTCT-AAAACATTGATTTTC-ACAATCAGGGATACTCCAACCC
*
460959 TGTTATTTCTGAGGG
64 CGTTATTT-TGAGGG
* * * *
460974 GATACTCCAACCCCGATTTTATTTCTAGAACACTAATTTTCCATAATC-GAGGATACTC
1 GATACTCCAACCCCGATTTTATTTCTAAAACATTGATTTT-CACAATCAG-GGATACTC
461032 TAGCCCCATT
Statistics
Matches: 238, Mismatches: 43, Indels: 27
0.77 0.14 0.09
Matches are distributed among these distances:
77 1 0.00
78 26 0.11
79 203 0.85
80 7 0.03
81 1 0.00
ACGTcount: A:0.27, C:0.25, G:0.15, T:0.33
Consensus pattern (77 bp):
GATACTCCAACCCCGATTTTATTTCTAAAACATTGATTTTCACAATCAGGGATACTCCAACCCCG
TTATTTTGAGGG
Found at i:463119 original size:4 final size:4
Alignment explanation
Indices: 463110--463144 Score: 61
Period size: 4 Copynumber: 8.8 Consensus size: 4
463100 TTTTAAGGTG
*
463110 TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTCA TTT
1 TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTT
463145 TGTACAGTCA
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
4 29 1.00
ACGTcount: A:0.23, C:0.03, G:0.00, T:0.74
Consensus pattern (4 bp):
TTTA
Found at i:464879 original size:21 final size:20
Alignment explanation
Indices: 464855--464893 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 20
464845 ATACTAAAAA
464855 ATTTTATAAA-AATCTTTTATT
1 ATTTTA-AAATAAT-TTTTATT
464876 ATTTTAAAATAATTTTTA
1 ATTTTAAAATAATTTTTA
464894 AACATGTAAC
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
20 8 0.47
21 9 0.53
ACGTcount: A:0.41, C:0.03, G:0.00, T:0.56
Consensus pattern (20 bp):
ATTTTAAAATAATTTTTATT
Found at i:466340 original size:13 final size:13
Alignment explanation
Indices: 466322--466346 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
466312 CAAAGATCAG
466322 TGTATCGATACAA
1 TGTATCGATACAA
466335 TGTATCGATACA
1 TGTATCGATACA
466347 TTTTTTGGCA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:466403 original size:33 final size:33
Alignment explanation
Indices: 466366--466431 Score: 96
Period size: 33 Copynumber: 2.0 Consensus size: 33
466356 AGTAGCTTAA
466366 ATTGTATCGATACAAAAAAATATGTATCGATAC
1 ATTGTATCGATACAAAAAAATATGTATCGATAC
* ***
466399 ATTGTATCGATACAACACTTTATGTATCGATAC
1 ATTGTATCGATACAAAAAAATATGTATCGATAC
466432 CAATCGTTGA
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
33 29 1.00
ACGTcount: A:0.39, C:0.15, G:0.12, T:0.33
Consensus pattern (33 bp):
ATTGTATCGATACAAAAAAATATGTATCGATAC
Found at i:466406 original size:13 final size:13
Alignment explanation
Indices: 466388--466412 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
466378 CAAAAAAATA
466388 TGTATCGATACAT
1 TGTATCGATACAT
466401 TGTATCGATACA
1 TGTATCGATACA
466413 ACACTTTATG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:469034 original size:37 final size:37
Alignment explanation
Indices: 468984--469059 Score: 143
Period size: 37 Copynumber: 2.1 Consensus size: 37
468974 CGAACTCATC
*
468984 GTAGAGCTATGGAAAATGATCATCAGGCTCGTATTGA
1 GTAGAGCTATGGAAAATGATCATCAGGCTCGCATTGA
469021 GTAGAGCTATGGAAAATGATCATCAGGCTCGCATTGA
1 GTAGAGCTATGGAAAATGATCATCAGGCTCGCATTGA
469058 GT
1 GT
469060 GATTGGAGCT
Statistics
Matches: 38, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.32, C:0.14, G:0.28, T:0.26
Consensus pattern (37 bp):
GTAGAGCTATGGAAAATGATCATCAGGCTCGCATTGA
Found at i:469583 original size:42 final size:42
Alignment explanation
Indices: 469389--469638 Score: 172
Period size: 42 Copynumber: 5.9 Consensus size: 42
469379 TTTACAAAAG
* * * * * *
469389 TTTTTTTTTCTTTTTTTCTTTGTCCTCAAAGAGTAGGATGCA
1 TTTTATTTCCTTTTTTCCTTTGTCTTCAAAGAGCAGGACGCA
* * * *
469431 CTTCATTTCCTTCTTTTCCCTTTTAGT-TCTCAAAAAGTAGGACGCA
1 TTTTATTTCCTT-TTTT-CC-TTT-GTCT-TCAAAGAGCAGGACGCA
* * * *
469477 CTTTATTCTCC-TTTTTCCTTTGTCCTT-AAAAAGCAAGACACA
1 TTTTATT-TCCTTTTTTCCTTTGT-CTTCAAAGAGCAGGACGCA
* * *
469519 TTTAATTT-CTTTTTTCCTTTGTCTTCAAAGGGCAGGATGCA
1 TTTTATTTCCTTTTTTCCTTTGTCTTCAAAGAGCAGGACGCA
* * *
469560 TTTTATTTCCTTTTTTCCTTTGTCCTCAAGGAGCAGGACCCA
1 TTTTATTTCCTTTTTTCCTTTGTCTTCAAAGAGCAGGACGCA
* * *
469602 TTTCATTCTCC--TTTT-CTTTGTCTTTAAAGAGTAGGAC
1 TTTTATT-TCCTTTTTTCCTTTGTCTTCAAAGAGCAGGAC
469639 ACCCCTTTCC
Statistics
Matches: 166, Mismatches: 30, Indels: 26
0.75 0.14 0.12
Matches are distributed among these distances:
40 22 0.13
41 34 0.20
42 61 0.37
43 11 0.07
44 4 0.02
45 7 0.04
46 24 0.14
47 3 0.02
ACGTcount: A:0.20, C:0.22, G:0.13, T:0.46
Consensus pattern (42 bp):
TTTTATTTCCTTTTTTCCTTTGTCTTCAAAGAGCAGGACGCA
Found at i:469604 original size:83 final size:82
Alignment explanation
Indices: 469469--469630 Score: 193
Period size: 83 Copynumber: 2.0 Consensus size: 82
469459 CTCAAAAAGT
* *
469469 AGGACGCACTTTATTCTCCTTTTTCCTTTGTCCTTAAAAAGCAAGACACATTTAATT-TCTTTTT
1 AGGACGCACTTTATTCTCCTTTTTCCTTTGTCCTCAAAAAGCAAGACACATTTAATTCTC-CTTT
469533 TCCTTTGTCTTCAAAGGGC
65 T-CTTTGTCTTCAAAGGGC
* * ** * * *
469552 AGGATGCATTTTATT-TCCTTTTTTCCTTTGTCCTCAAGGAGCAGGACCCATTTCATTCTCCTTT
1 AGGACGCACTTTATTCTCC-TTTTTCCTTTGTCCTCAAAAAGCAAGACACATTTAATTCTCCTTT
*
469616 TCTTTGTCTTTAAAG
65 TCTTTGTCTTCAAAG
469631 AGTAGGACAC
Statistics
Matches: 67, Mismatches: 10, Indels: 5
0.82 0.12 0.06
Matches are distributed among these distances:
82 16 0.24
83 49 0.73
84 2 0.03
ACGTcount: A:0.20, C:0.23, G:0.13, T:0.44
Consensus pattern (82 bp):
AGGACGCACTTTATTCTCCTTTTTCCTTTGTCCTCAAAAAGCAAGACACATTTAATTCTCCTTTT
CTTTGTCTTCAAAGGGC
Found at i:472648 original size:50 final size:49
Alignment explanation
Indices: 472589--472715 Score: 157
Period size: 50 Copynumber: 2.5 Consensus size: 49
472579 TTAAATTCTA
* *
472589 GATTTTTCATCTCAGGGATACTCCAACCCCGGCTTTA-TTTCTAAAATATT
1 GATTTTTCATCTC-GGGATACTCCAACCCCGACTTTATTTTC-AAAATATC
*
472639 GATTTTTCATCTCGAGGATACTCCAACCCCGATTTTATTTTCAAAATATC
1 GATTTTTCATCTCG-GGATACTCCAACCCCGACTTTATTTTCAAAATATC
* *
472689 AATTTTTCATAATCGGGGATACTCCAA
1 GATTTTTCAT-CTC-GGGATACTCCAA
472716 TCCTATTATA
Statistics
Matches: 68, Mismatches: 5, Indels: 7
0.85 0.06 0.09
Matches are distributed among these distances:
49 1 0.01
50 49 0.72
51 17 0.25
52 1 0.01
ACGTcount: A:0.28, C:0.23, G:0.12, T:0.37
Consensus pattern (49 bp):
GATTTTTCATCTCGGGATACTCCAACCCCGACTTTATTTTCAAAATATC
Found at i:472743 original size:79 final size:80
Alignment explanation
Indices: 472654--472994 Score: 336
Period size: 79 Copynumber: 4.3 Consensus size: 80
472644 TTCATCTCGA
* *
472654 GGATACTCCAACCCCGATTTTATTTTC-AAAATATCAATTTTTCATAATCGGGGATACTCCAATC
1 GGATACTCCAACCCCGATTTTATTTTCTAAAATATCGATTTTTCATAATCGGGGATACTCCAACC
* * *
472718 CTATTATATCCGAGG
66 CTGTTATTTTCGAGG
* * * * *
472733 GGATACTCCAACCCC-AGCTTTA-TTTCTAAAATATTGATTTCTCATAATCAGGGATACTTCAAC
1 GGATACTCCAACCCCGA-TTTTATTTTCTAAAATATCGATTTTTCATAATCGGGGATACTCCAAC
* *
472796 CCTGTTATTTTTGCGG
65 CCTGTTATTTTCGAGG
* * * * ** *
472812 GGATACTTCAACCCCGGTCTT-GTTTCTAAAGCATCGATTTTTCACAATCGGGGATACTCCAACC
1 GGATACTCCAACCCCGATTTTATTTTCTAAAATATCGATTTTTCATAATCGGGGATACTCCAACC
*
472876 CCGTTATTTTCGAGG
66 CTGTTATTTTCGAGG
** * * *
472891 AAATACTCCAACCCCGATTTTATTTTC-AAAACA-CTGA-TTTTCTATAATCAGAGATACTCCAA
1 GGATACTCCAACCCCGATTTTATTTTCTAAAATATC-GATTTTTC-ATAATCGGGGATACTCCAA
*
472953 CCCTGTTATTTTCGAAG
64 CCCTGTTATTTTCGAGG
** * *
472970 AAATACTCAAACCCCAATTTTATTT
1 GGATACTCCAACCCCGATTTTATTT
472995 CCAGAACACC
Statistics
Matches: 215, Mismatches: 40, Indels: 14
0.80 0.15 0.05
Matches are distributed among these distances:
78 11 0.05
79 200 0.93
80 4 0.02
ACGTcount: A:0.29, C:0.24, G:0.13, T:0.34
Consensus pattern (80 bp):
GGATACTCCAACCCCGATTTTATTTTCTAAAATATCGATTTTTCATAATCGGGGATACTCCAACC
CTGTTATTTTCGAGG
Found at i:473003 original size:79 final size:79
Alignment explanation
Indices: 472864--473038 Score: 260
Period size: 79 Copynumber: 2.2 Consensus size: 79
472854 CACAATCGGG
* * * * *
472864 GATACTCCAACCCCGTTATTTTCGAGGAAATACTCCAACCCCGATTTTATTTTCAAAACACTGAT
1 GATACTCCAACCCCGTTATTTTCGAAGAAATACTCAAACCCCAATTTTATTTCCAAAACACCGAT
472929 TTTCTATAATCAGA
66 TTTCTATAATCAGA
* *
472943 GATACTCCAACCCTGTTATTTTCGAAGAAATACTCAAACCCCAATTTTATTTCCAGAACACCGAT
1 GATACTCCAACCCCGTTATTTTCGAAGAAATACTCAAACCCCAATTTTATTTCCAAAACACCGAT
*
473008 TTTCTATAATCAGG
66 TTTCTATAATCAGA
* *
473022 GCTACTCCAGCCCCGTT
1 GATACTCCAACCCCGTT
473039 GTTATCCCCA
Statistics
Matches: 85, Mismatches: 11, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
79 85 1.00
ACGTcount: A:0.30, C:0.27, G:0.11, T:0.31
Consensus pattern (79 bp):
GATACTCCAACCCCGTTATTTTCGAAGAAATACTCAAACCCCAATTTTATTTCCAAAACACCGAT
TTTCTATAATCAGA
Found at i:473008 original size:158 final size:156
Alignment explanation
Indices: 472656--473038 Score: 378
Period size: 158 Copynumber: 2.4 Consensus size: 156
472646 CATCTCGAGG
* * * * **
472656 ATACTCCAACCCCGATTTTATTTTCAAAATATCAATTTTTCATAATCGGGGATACTCCAATCCTA
1 ATACT-CAACCCCGATTTTA-TTTCCAAACATCGATTTTTCATAATCGGGGATACTCCAACCCCG
** * * *
472721 TTATATCCGAGGGGATACTCCAACCCCAGCTTTATTTCTAAAATATTGATTTCTCATAATCAGGG
64 TTATATCCGAGGAAATACTCCAACCCCAGCTTTATTTCTAAAACACTGATTTCTCATAATCAGAG
* * ** **
472786 ATACTTCAACCCTGTTATTTTTGCGGGG
129 ATACTCCAACCCTGTTATTTTCGAAGAA
* * * * *
472814 ATACTTCAACCCCGGTCTTGTTTCTAAAGCATCGATTTTTCACAATCGGGGATACTCCAACCCCG
1 ATAC-TCAACCCCGATTTTATTTCCAAA-CATCGATTTTTCATAATCGGGGATACTCCAACCCCG
* * *
472879 TTATTTTCGAGGAAATACTCCAACCCC-GATTTTATTT-TCAAAACACTGATTT-TCTATAATCA
64 TTATATCCGAGGAAATACTCCAACCCCAG-CTTTATTTCT-AAAACACTGATTTCTC-ATAATCA
472941 GAGATACTCCAACCCTGTTATTTTCGAAGAA
126 GAGATACTCCAACCCTGTTATTTTCGAAGAA
* * * * *
472972 ATACTCAAACCCCAATTTTATTTCCAGAACACCGA-TTTTCTATAATCAGGGCTACTCCAGCCCC
1 ATACTC-AACCCCGATTTTATTTCCA-AACATCGATTTTTC-ATAATCGGGGATACTCCAACCCC
473036 GTT
63 GTT
473039 GTTATCCCCA
Statistics
Matches: 183, Mismatches: 34, Indels: 16
0.79 0.15 0.07
Matches are distributed among these distances:
157 18 0.10
158 162 0.89
159 3 0.02
ACGTcount: A:0.29, C:0.25, G:0.13, T:0.33
Consensus pattern (156 bp):
ATACTCAACCCCGATTTTATTTCCAAACATCGATTTTTCATAATCGGGGATACTCCAACCCCGTT
ATATCCGAGGAAATACTCCAACCCCAGCTTTATTTCTAAAACACTGATTTCTCATAATCAGAGAT
ACTCCAACCCTGTTATTTTCGAAGAA
Found at i:475536 original size:475 final size:472
Alignment explanation
Indices: 474007--475550 Score: 1679
Period size: 476 Copynumber: 3.2 Consensus size: 472
473997 GCAACAACAC
* * *
474007 ACATAGTTTTCTTATAAGGATACACGATATTAATGCTCTGGTTT-TAAAAGAAAGGCTTTTTTCC
1 ACATAGTTTTCTTATAAGGATACATGATATTGATGCTCTGGTTTCGAAAA-AAAGGCTTTTTTCC
* * ** *
474071 C-CCTAATTTTTGTAAAGTCTAAGTTCATGCCTCAAGTGA-ACCAAACT-TGGATTCTGGTAAAG
65 CACC-AATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGA-CAAA-TATGGATTCTAATAATG
*
474133 ATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTATCCTTATTAGGATAAATGATACTGA
127 ATCTTCATTCATTTTGTGATTGGGCACTATAAACACATTATCCTTATTAGGATAAATGATACTGA
* * *
474198 TGATTTTCTTTTGCATGAAAATCTTTTTTTTGCCCTATTTTCTTTAAAATCAATGTTCATCGCTT
192 TGATTTTCTTTTGCA-GTAAATCTTTTCTTTG-CCTATTTTCTTTAAAATCAATGTTCATCCCTT
* * * * **
474263 AAATAAGGCAAGGATCGATTCTCGTAATAGTCTCCAATG-TTTTCAAGATTGGGAAGCAAGGACA
255 AAATAAGACAAGCATAGATTCTCGTAATAGTCTCCAA-GCTTTTCAAGATT-GGAACCAAAAACA
* * * * *
474327 CA-TTCTTTTCGTTGGGATAAATGACATTAATGCTTTGG-GCTCGCAAAAAAAGCTTTT-ATTTC
318 CATTTC-TTTCATTAGGATACATGACATTGATGCTTTGGTG-TCGCAAGAAAAGCTTTTCA-TTC
* * * *
474389 TAAATTTTTTGATAGAATCAAAGTTTGTCTCTTAGATAAGACAAAACATTAATACTCATACTAAT
380 CAACTTTTTT-ATAGAATCAAAGTTTGTCTCTTAAATAAGAC-AAACATGAATACTCATACTAAT
*
474454 CCCCAGTCCTTTCAGGATTAGGCACCATAA
443 CCCCATTCCTTTCAGGATTAGGCACCATAA
* * * * * * *
474484 ACATAGTCTTCTCATTAGTATACATGATATTGATGCTTTGGTTTC-ACCAGAAAGGC-TTTTTCC
1 ACATAGTTTTCTTATAAGGATACATGATATTGATGCTCTGGTTTCGA-AAAAAAGGCTTTTTTCC
* * * * *
474547 CACAAATTTTTGTAATGTCTAAATTCGAT-CCTCAAATGAGACAAACATGGATTCCAATAATGAT
65 CACCAATTTTTGTAAAGTCTAAGTTCG-TGCCTCAAATGAGACAAATATGGATTCTAATAATGAT
* * * * *
474611 CTTCATTCTTTTTGTGATTGGGCACTATAAACACATTCTCCTCATTAAGATAAATGATATTGATG
129 CTTCATTCATTTTGTGATTGGGCACTATAAACACATTATCCTTATTAGGATAAATGATACTGATG
*
474676 ATTTTCTTTTGCA-TAGAATTCTTTTCTTTGACCTATTTTCCTTAAAATCAATGTTCATCCCTTA
194 ATTTTCTTTTGCAGTA-AA-TCTTTTCTTTG-CCTATTTTCTTTAAAATCAATGTTCATCCCTTA
* * * * ** *
474740 AGTAAGAGAAGCATCA-ATTCTCGTAACAGTCTCTATTCTTTTCAAGATTAGGAACCAAACACAC
256 AATAAGACAAGCAT-AGATTCTCGTAATAGTCTCCAAGCTTTTCAAGATT-GGAACCAAAAACAC
* * * * *
474804 ATTTCTTTCATTAGGATACGTGACATTGTTGCTTTAGTGTCACAAGAAAAGCTTTTCTTTCCAAC
319 ATTTCTTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCATTCCAAC
* *
474869 TTTTTGATAGAATCAAAGTTTGTCTCCTAAATAAGACAAACATGAATACTCATACTAATCCCCAT
384 TTTTTTATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACTCATACTAATCCCCAT
* *
474934 TCCCTTCAGGATTAGGCGCCATAA
449 TCCTTTCAGGATTAGGCACCATAA
* * * * * * **
474958 GCATAGTCATTTC--ATTAGGATACATGATATTGATACTTTGGATTCGCAAGAAAA-GCCATTTT
1 ACATAGT--TTTCTTATAAGGATACATGATATTGATGCTCTGGTTTCG-AAAAAAAGGCTTTTTT
* * * * * *
475020 CCAACTAATTTTTGTAAAGTCTAAGCTCTTGCCTTAAATGAGACAAATAAGGATTCTAATAATGA
63 CCCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAATATGGATTCTAATAATGA
* * * *
475085 TCTTCATTCATTTTGTGATTGGGCACTGTAATCACATTTTCCTTGTTAGGATAAATGATACTGAT
128 TCTTCATTCATTTTGTGATTGGGCACTATAAACACATTATCCTTATTAGGATAAATGATACTGAT
* * * * ***
475150 TATTTTCTTTTGCACGTAAATCTATTCTTTGCCATATGTTCTTTAAAATCAAAGTTCATATTTTA
193 GATTTTCTTTTGCA-GTAAATCTTTTCTTTGCC-TATTTTCTTTAAAATCAATGTTCATCCCTTA
* * *
475215 AATAAGACAAGCATAGATTCTCATAATAGTTTCCAAGCTTTTCAAAGATTGTGAATCAAAAACAC
256 AATAAGACAAGCATAGATTCTCGTAATAGTCTCCAAGCTTTTC-AAGATTG-GAACCAAAAACAC
* * * * * *
475280 ATTTCCTTCATTAGGATGCATGACATTGATGCTTTGGTGTTGTAAGAAAAGCTTTTCCTTGCAAC
319 ATTTCTTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCATTCCAAC
* * * *
475345 GTTTTTTATAGAATCACAGTTTGTCTCTTAAATAAGACAAACATGAGTACTTATACTAA-CCCTA
384 -TTTTTTATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACTCATACTAATCCC-C
* ** * * *
475409 ATTCTTTTTTGGATTAGTCATCACAA
447 ATTCCTTTCAGGATTAGGCACCATAA
* * *
475435 ACATAGTTTTCTTAAAAGGATACATGATATT-ATGCTCTAGTTTCGAAAAAAAGACTTTTTTCCC
1 ACATAGTTTTCTTATAAGGATACATGATATTGATGCTCTGGTTTCGAAAAAAAGGCTTTTTTCCC
* *
475499 TCCAATTTTTGTAAAGTCTAA-TTCGTGCCTCAAATGAG-CTAAACATGGATTC
66 ACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGAC-AAATATGGATTC
475551 GAGCTAAACA
Statistics
Matches: 886, Mismatches: 150, Indels: 64
0.81 0.14 0.06
Matches are distributed among these distances:
474 91 0.10
475 264 0.30
476 384 0.43
477 146 0.16
478 1 0.00
ACGTcount: A:0.32, C:0.17, G:0.14, T:0.37
Consensus pattern (472 bp):
ACATAGTTTTCTTATAAGGATACATGATATTGATGCTCTGGTTTCGAAAAAAAGGCTTTTTTCCC
ACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAATATGGATTCTAATAATGATCT
TCATTCATTTTGTGATTGGGCACTATAAACACATTATCCTTATTAGGATAAATGATACTGATGAT
TTTCTTTTGCAGTAAATCTTTTCTTTGCCTATTTTCTTTAAAATCAATGTTCATCCCTTAAATAA
GACAAGCATAGATTCTCGTAATAGTCTCCAAGCTTTTCAAGATTGGAACCAAAAACACATTTCTT
TCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCATTCCAACTTTTTTA
TAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACTCATACTAATCCCCATTCCTTTC
AGGATTAGGCACCATAA
Found at i:475590 original size:103 final size:102
Alignment explanation
Indices: 475456--475653 Score: 256
Period size: 103 Copynumber: 1.9 Consensus size: 102
475446 TTAAAAGGAT
* * * * *
475456 ACATGATATTATGCTCTAGTTTCGAAAAAAAGACTTTTTTCCCTCCAATTTTTGTAAAGTCTAA-
1 ACATGATATTATGCTCTAGTTTCGAAAAAAAG-CGTTTTTCCCACAAACTTTTGTAAAGTATAAT
* *
475520 TTCGTGCCTCAAATGAGCTAAACATGGATTCGAGCTAA
65 TTCATGCCTCAAATGAGCCAAACATGGATTCGAGCTAA
* * * *
475558 ACATGATATTGATGCTTTGGTTTC-ACTAAAAAGGGTTTTTCCCACAAACTTTTGTAAAGTATAA
1 ACATGATATT-ATGCTCTAGTTTCGA-AAAAAAGCGTTTTTCCCACAAACTTTTGTAAAGTATAA
475622 TTTCATGCCTCAAATGAGCCAAACATGGATTC
64 TTTCATGCCTCAAATGAGCCAAACATGGATTC
475654 TAGTAATGAT
Statistics
Matches: 82, Mismatches: 11, Indels: 5
0.84 0.11 0.05
Matches are distributed among these distances:
102 36 0.44
103 46 0.56
ACGTcount: A:0.32, C:0.18, G:0.15, T:0.34
Consensus pattern (102 bp):
ACATGATATTATGCTCTAGTTTCGAAAAAAAGCGTTTTTCCCACAAACTTTTGTAAAGTATAATT
TCATGCCTCAAATGAGCCAAACATGGATTCGAGCTAA
Found at i:479309 original size:475 final size:473
Alignment explanation
Indices: 476402--484793 Score: 8614
Period size: 475 Copynumber: 17.7 Consensus size: 473
476392 AACAAAGTCC
* *
476402 TGCTTTGGTTTCGCTAA-AAAGGCTTTTTTCCCACCAATTTTTATAAAGTCTAAGTTCGTGCCTC
1 TGCTTT-GTTTCAC-AAGAAAGGCTTTTTTCCCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTC
* * * * * *
476466 AAATGAGATAAACAT-AGATTCTTGTAATGATCTTGATTCATTTTATGATTAGGCACAATAAATA
64 AAATGAGACAAACATGAGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACA
* * * * *
476530 CGTTCTCTTCATTAGGATAAAAGATATTGATGATTTTTTTTTGCATGAAAATCTTTTCTTTGCCT
129 CATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGAAAATCTTTTCTTTGCCC
* * * * * * *
476595 TATTTTCCTTAAAATCAATGTTCATCACTTAATTAAGGCGATG-ATCTATTCTTGTAATAGTCTC
194 TATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGG-AAAGCATCGATTCTCGTAATAGTCTC
* * * ** *
476659 CAATCTTTTCTAGATTGGGAACTAAAAACACATTCTTTTCATTAGGATAAATGACATTGATGCTT
258 CAAGCTTTTCAAGATTGGGAACCAAAAACACATTCCCTTCATTAGGATACATGACATTGATGCTT
* * * ** * *
476724 TGGGGTTC-TAAGAAAAGCTTTT-TTTCACCGTTTTTGATAGAATCTTAGTTGGTCTCCTAAATA
323 T-GGG-TCGCAAGAAAAGCTTTTCTTTCAACTTTTTTGATAGAATCAAAGTTTGTCTCTTAAATA
* * * * * *
476787 AGGCAAACGTGAATACTCATACAAATTCTCGTTCTTCTT-AGGGTTAGGCACCACAAACATAGTC
386 AGACAAACATGAATACTCATACTAA-TCCCATTCTT-TTCAGGATTAGGCACCACAAACATAGTC
* *
476851 TTCTCATTAGGATACATAATATTGA
449 TTCTTATTAGGATACATGATATTGA
* * * * *
476876 TGCTTTGGATACGCAAGAAAGGCCTTTTTCCCACCAATTTTTGTAAAGTCTAAGTTCGTCCCTCA
1 TGCTTT-GTTTCACAAGAAAGGCTTTTTTCCCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCA
* * * * * *
476941 AATAAGACAAATAAG-GATTCTAGTAATGTTCTTCATTCA-TTTGTGATTAGGAACTATAATCAC
65 AATGAGACAAACATGAGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACAC
* * **
477004 ATTCTCCTTATTAGGATAAATGATACTT-ATGATTTTCTTTTCCACAAAAATCTTTTCTTTGCCC
130 ATTCTCCTCATTAGGATAAATGATA-TTGATGATTTTCTTTTGCATGAAAATCTTTTCTTTGCCC
* * *
477068 CATTTTCCTTAAAATCAAAGTTCATCCTTTAAA-AAAGACAAGCATCGATTCTCGTAATAGTCTC
194 TATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGGA-AAGCATCGATTCTCGTAATAGTCTC
* * * * * * *
477132 CAAGCTTTTCAAAGATTGTGAACTAAAGACACATTTCCTTCATTAGGATGCATCACATTAATGCT
258 CAAGCTTTTC-AAGATTGGGAACCAAAAACACATTCCCTTCATTAGGATACATGACATTGATGCT
* * *
477197 TTGGTGTCACTAGAAATGCTTTTCTTGGT-AA-TGTTTTTGATAGAATCAAAGTTTGTCTCTTAA
322 TTGG-GTCGCAAGAAAAGCTTTTCTT--TCAACT-TTTTTGATAGAATCAAAGTTTGTCTCTTAA
* * * * * * *
477260 ATAAGATAAACATGAATGCTCGTGCTAACCCCAATTCTTTTCAGGATAAGGCACCA-TAACATAG
383 ATAAGACAAACATGAATACTCATACTAATCCC-ATTCTTTTCAGGATTAGGCACCACAAACATAG
* * * *
477324 TTTTCTCATAAGGATACACGATATTGA
447 TCTTCTTATTAGGATACATGATATTGA
* * * * **
477351 TGCTCTGGTTTTGA-AAGAAAGTCTTTATTCCC-CCTAATTTTTG-AAACGTCTAAGTTCGTATC
1 TGCT-TTG-TTTCACAAGAAAGGCTTTTTTCCCACC-AATTTTTGTAAA-GTCTAAGTTCGTGCC
* * * *
477413 TCAAATGAGCCAAACAT-AAATTCTACTAATGATCTTCATTCATTTTTTGATTAGGCACTATAAA
62 TCAAATGAGACAAACATGAGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAA
* * * *** * * *
477477 CACATTCTCCTTATTAGGATAAAAGACACAAATGAATTTCTTTTGCATGGAAATCATTTCTTTGC
127 CACATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGAAAATCTTTTCTTTGC
*
477542 CCTATTTTCCTTAAAATCAAAGTTTATCCCTTAAATAA-GATAAGCATCGATTCTCGTAACTA-T
192 CCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGGA-AAGCATCGATTCTCGTAA-TAGT
* ** *
477605 CTCCAAGCTTTTCAAATATTATGAACCAAAAACACATTCCCTTTATTAGGATACATGACATTGAT
255 CTCCAAGCTTTTC-AAGATTGGGAACCAAAAACACATTCCCTTCATTAGGATACATGACATTGAT
** * * *
477670 AATTTGGTGTCACAAGAAAAGCTTTTCTTTCCAACTTTTTTGAAAGAATCAAAGTTTGTCTCTTC
319 GCTTTGG-GTCGCAAGAAAAGCTTTTCTTT-CAACTTTTTTGATAGAATCAAAGTTTGTCTCTTA
* * *
477735 AATAAGACAAACATGAATACTCATAATAATTCCCATTCTTTTTAGGATTAGGCATCACAAACATA
382 AATAAGACAAACATGAATACTCATACTAA-TCCCATTCTTTTCAGGATTAGGCACCACAAACATA
* *
477800 GTCCTT-TTATTCGGATACATGATATTCA
446 GT-CTTCTTATTAGGATACATGATATTGA
* * * * *
477828 TGCTTTGGTTTCGCAAGAAAGGGTTTGTTCACACCAGTTTTTGTAAAGTCTAAGTTCGTGCCTCA
1 TGCTTT-GTTTCACAAGAAAGGCTTTTTTCCCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCA
* ** **
477893 AATGAGACAAACATG-GATTCTAGTAATTATCTTTGTTCATTTTGTGATTAGGCACTATAAATGC
65 AATGAGACAAACATGAGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACAC
*
477957 ATTCTCCTCATTAGGATAAAAGATATTGATGATTTTCTTTTGCATGAAAATCTTTTCTTTGCCCT
130 ATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGAAAATCTTTTCTTTGCCCT
* * *
478022 ATTTTCCTTAAAATCAATGTTCATCGCTTTAATAA-GACAATG-ATCGATTCTCGTAATAGTCTC
195 ATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGGA-AA-GCATCGATTCTCGTAATAGTCTC
* * ** *
478085 CAATCTTTTCAAGATTGGGAACTAAAAACACATTCGTTTCATTAGGATAAATGACATTGATGCTT
258 CAAGCTTTTCAAGATTGGGAACCAAAAACACATTCCCTTCATTAGGATACATGACATTGATGCTT
* * *
478150 TAGGGTCACAA-AAAATGCTTTTCTTTTCACCATTTTTGATAGAATCAAAGTTTGTCT-TCTAAA
323 T-GGGTCGCAAGAAAA-GCTTTTC-TTTCAACTTTTTTGATAGAATCAAAGTTTGTCTCT-TAAA
* * * * * *
478213 TTAGACAAACGTGAATACTCATACAAATTCCCATTCTTTTTAGGGTTAGGCACCACAAACATAGC
384 TAAGACAAACATGAATACTCATACTAA-TCCCATTCTTTTCAGGATTAGGCACCACAAACATAGT
*
478278 CTTCTCATTAGGATACATGATATTGA
448 CTTCTTATTAGGATACATGATATTGA
* * * *
478304 TGCCTTGTATTCACAAGAAATGCCTTTTTCCCACCAATTTTTGTAAAGTCTAAGTTCGTACCTCA
1 TGCTTTGT-TTCACAAGAAAGGCTTTTTTCCCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCA
* * * * *
478369 AATGAGAC-AA-ATAAGTATTCTAGTAATGATCTTTATTCATTTTGTGATTGGGTACTATAATCA
65 AATGAGACAAACATGAG-ATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACA
* * * * *
478432 TATTCTCCTCATTAGGATAAAAGATATTGATAATTTGT-TTTTACATGGAAATCTTTTCTTTGCC
129 CATTCTCCTCATTAGGATAAATGATATTGATGATTT-TCTTTTGCATGAAAATCTTTTCTTTGCC
* * * * *
478496 CTATTTTTCTTAAAATCAATGTTCATCTCTTAAATAA-GACAAACATCGATTCTCGTAATTGTCT
193 CTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGGA-AAGCATCGATTCTCGTAATAGTCT
* * * * *
478560 CCAAGCTTTTTAAAGATTGTGAACCAAAAACACATTTCCTTCATTAGGA-AGCATCACATTAATG
257 CCAAGC-TTTTCAAGATTGGGAACCAAAAACACATTCCCTTCATTAGGATA-CATGACATTGATG
*
478624 CTTTGGTGTCG-ATAGAAAAGCATTTT-TTTGCAA-TATTTTTGATAAAATCAAAGTTTGTCTCT
320 CTTTGG-GTCGCA-AGAAAAGC-TTTTCTTT-CAACT-TTTTTGATAGAATCAAAGTTTGTCTCT
* * * * *
478686 TAAATAAGACAAACATGAATACTCGTGCTAACCCCAATTCTTTTCAGGATAAGGCACCA-TAACA
380 TAAATAAGACAAACATGAATACTCATACTAATCCC-ATTCTTTTCAGGATTAGGCACCACAAACA
* * **
478750 TAGT-TCTCTCATAAGGATACACAATATTGA
444 TAGTCT-TCTTATTAGGATACATGATATTGA
* * * ** * * *
478780 TGCTCTAGTTTCAAAAGAAAGGCTTTCTTCTCC-TTAATTTTTATAAAGTCTAAGTTCATACCTC
1 TGCT-TTGTTTCACAAGAAAGGCTTTTTTC-CCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTC
* *
478844 AAATGAGCCAAACA-GAGATTCTAGTAATGATCTTCATTCATTTTTTGATTAGGCACTATAAACA
64 AAATGAGACAAACATGAGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACA
* * ** * * * *
478908 CATTCTTCTCATTAGGATAAATGACACAGATGA-ATTCTTTTGCATGGAAATCATTTCTTTGCTC
129 CATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGAAAATCTTTTCTTTGCCC
* * * ** *
478972 TATTTTCCTTAAAATTAATGTTCATCTCTTAAATAAGGTAAAG-ATTTATTCTTGTAATAGTCTC
194 TATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGG-AAAGCATCGATTCTCGTAATAGTCTC
* * ** *
479036 CAATCTTTTCAAGATTGGGAACTAAAAACACATTCTTTTCATTAGGATAAATGACATTGATGCTT
258 CAAGCTTTTCAAGATTGGGAACCAAAAACACATTCCCTTCATTAGGATACATGACATTGATGCTT
* * * * *
479101 TAGGGTTGCAAGAAATGCTTTCCTTTTAACCTTTTTTGATAGAATCAAAGTTTGTCTCCTAAATA
323 T-GGGTCGCAAGAAAAGCTTTTCTTTCAA-CTTTTTTGATAGAATCAAAGTTTGTCTCTTAAATA
** * * * * *
479166 AGACAAACGCGAATACTTATACAAATTTCCATTCTTTTCAGGGTTAGGCACCACAAACATAGCCT
386 AGACAAACATGAATACTCATACTAA-TCCCATTCTTTTCAGGATTAGGCACCACAAACATAGTCT
* *
479231 TCTTATTAGGATGCATGATATTAA
450 TCTTATTAGGATACATGATATTGA
* * **
479255 TGCTTTGTATTCACAAGAAAGGCTTTTTTCTCACAAATTTTTGTAAAGTCTAAGTTCGTATCTCA
1 TGCTTTGT-TTCACAAGAAAGGCTTTTTTCCCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCA
* * * * *
479320 AATAAGAC-AA-ATAAGTATTCTAGTAATGATCATCATTCATTTTGTGATTGGGCACTATAATCA
65 AATGAGACAAACATGAG-ATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACA
* * ** *
479383 CATTCT-CTGCATTAGGATAAAAGATATTGATAATTTTCTTTCACATGAAAAACTTTTCTTTGCC
129 CATTCTCCT-CATTAGGATAAATGATATTGATGATTTTCTTTTGCATGAAAATCTTTTCTTTGCC
* * * * *
479447 CTA-TTCCCTTAAAATCAATGTTCATCCCTTAAATAA-GACAAACATCGATTCACGTAACAGTCT
193 CTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGGA-AAGCATCGATTCTCGTAATAGTCT
* * * * * * * *
479510 CCAATCTTTCCAAGCTTAGGAACCAAAAACACAATCCATTAATTAGGATAAATGACATTGATGCT
257 CCAAGCTTTTCAAGATTGGGAACCAAAAACACATTCCCTTCATTAGGATACATGACATTGATGCT
* * * **
479575 TTGAGGTCGCAAGAAATGCTTTTCTTTCCACTGTTTTTTATAGAATCAAAGTTTGTCTCCAAAAT
322 TTG-GGTCGCAAGAAAAGCTTTTCTTTCAACT-TTTTTGATAGAATCAAAGTTTGTCTCTTAAAT
* * * * *
479640 AAGACAAACGTGCATACTTATAGTAATCCCCATGCTTTTCAAGG-TTAGGCACCACAAACATAGT
385 AAGACAAACATGAATACTCATACTAAT-CCCATTCTTTTC-AGGATTAGGCACCACAAACATAGT
*
479704 CTTCTCT-GTAGGATACATGATATTGA
448 CTTCT-TATTAGGATACATGATATTGA
* * * * *
479730 TGCTTTGGGTTCACTAGAAAGGC-TTTTTCCCACAAATTTTTGTAATGTCTAAGTTCAAT-CCTC
1 TGCTTT-GTTTCACAAGAAAGGCTTTTTTCCCACCAATTTTTGTAAAGTCTAAGTTC-GTGCCTC
* * * * * * *
479793 AAATAAGACAAATATG-GATTCCAATAATGATCTTCATTTATTTTTTGATTGGGCACTATAAACA
64 AAATGAGACAAACATGAGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACA
* * ** * * * **
479857 TATTCTCCTCATTAGGATAAATAATCCTGATGATTTCCTTTTGCACGAAAATCTTTTTTTTGCTT
129 CATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGAAAATCTTTTCTTTGCCC
* * * * *
479922 TATTTTCCTTAAAATCAAAGCTCATCCCCTT-AATAAGAAAAGTATCAATTTTCGTAATAGTCTC
194 TATTTTCCTTAAAATCAAAGTTCAT-CCCTTAAATAAGGAAAGCATCGATTCTCGTAATAGTCTC
** * * * * * *
479986 CATTCTTTTCAAGATTGAGAACCAAAAGCACTTTCCCTTCATTTGGATACGTGACATTGATGCTG
258 CAAGCTTTTCAAGATTGGGAACCAAAAACACATTCCCTTCATTAGGATACATGACATTGATGCTT
*
480051 TGGTGTCGCAAGAAAAGCTTTTCTTTCTAACGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATA
323 TGG-GTCGCAAGAAAAGCTTTTCTTTC-AACTTTTTTGATAGAATCAAAGTTTGTCTCTTAAATA
* * * **
480116 AGACAAACATGAACACTCATACTAATCCTTATTC-TTTCAAGG-TAAGGCACTGCAAACATAGTC
386 AGACAAACATGAATACTCATACTAATCC-CATTCTTTTC-AGGATTAGGCACCACAAACATAGTC
*
480179 TTCTTATTAGGATACATGATAATT-T
449 TTCTTATTAGGATACATGAT-ATTGA
* * * * * **
480204 TACTTTGGTTTCACGAGAAAGGC-TTTTTCCCACAAATTTTTGTAATGTCTAAGTTCAAT-TATC
1 TGCTTT-GTTTCACAAGAAAGGCTTTTTTCCCACCAATTTTTGTAAAGTCTAAGTTC-GTGCCTC
* * *
480267 AAATGAGACAAACATG-GATTCCAGTAGTGAT-TATCATTCATTTTGTGATTGGGCACTATAAAC
64 AAATGAGACAAACATGAGATTCTAGTAATGATCT-TCATTCATTTTGTGATTAGGCACTATAAAC
* * * * * *
480330 ACCTTCTCCTCATTAGGATAAAAGATATTGACGATTTTCTTTTGTATGGAAATCTTTTCTTTACC
128 ACATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGAAAATCTTTTCTTTGCC
* * * * * *
480395 CTATTTTTCTTAAAATCAAAGTTCATGCTTTAAATAA-GACAAGCATCAATTCTTGTAATAGTTT
193 CTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGGA-AAGCATCGATTCTCGTAATAGTCT
** * * *
480459 CCAAGCTTTTCAAAGATTATGAACCAAAAACACATTTCCTTCATTAGGATGCATGGCATTGATGC
257 CCAAGCTTTTC-AAGATTGGGAACCAAAAACACATTCCCTTCATTAGGATACATGACATTGATGC
* *
480524 TTTGGGGTTGCAAGAAAAGCTTTTCTTTGCAACCTTTTTT-ATAGAATCAAACTTTGTCTCTTAA
321 TTT-GGGTCGCAAGAAAAGCTTTTCTTT-CAA-CTTTTTTGATAGAATCAAAGTTTGTCTCTTAA
* * * * * * * *
480588 ATAAAATAAACATTAGTACCCTTACTAA-CCCTAATTCTTTTCAGGATTAGGCATCACAAATATA
383 ATAAGACAAACATGAATACTCATACTAATCCC--ATTCTTTTCAGGATTAGGCACCACAAACATA
* * *
480652 GTTTTCTTATAAGGATACACGATATTGA
446 GTCTTCTTATTAGGATACATGATATTGA
* * * *
480680 TGCTCTAGTTTTGA-AAGAAAGGCTTTTTTCCC-CCAAATTTTTATAAAGTCTAAGTTCGTGCGT
1 TGCT-TTG-TTTCACAAGAAAGGCTTTTTTCCCACC-AATTTTTGTAAAGTCTAAGTTCGTGCCT
* ** *
480743 CAAATGAGCCAAACATGA-ATTCTAGTAAAAATCTTTATTCATTTTGTGATTAGGCACTATAAAC
63 CAAATGAGACAAACATGAGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAAC
* * * * *
480807 ACATTTTCCTCATTAGGAT-AATGATACTGATGATTTTCTTTTGCA-CAGAAATATTTTCTTTAC
128 ACATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGA-AAATCTTTTCTTTGC
** * * * * *
480870 CCTATTTTCCTTAAAATCAATTTTCATCGCTTAAATAAGGTAAGGATCGATTCTCATAAAAGTCT
192 CCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGGAAAGCATCGATTCTCGTAATAGTCT
* * ** *
480935 CCAATCTTTTTAAGATTGGGAACCAAAAACACATTCTTTTCATTAGGATAAATGACATTGATGCT
257 CCAAGCTTTTCAAGATTGGGAACCAAAAACACATTCCCTTCATTAGGATACATGACATTGATGCT
* ** * * *
481000 TGGGGTCGCAAGAAATTCTTTTCTTTCAAATGTTTTTGATAGAATCAAAGTTTGTCTCCTAAATG
322 TTGGGTCGCAAGAAAAGCTTTTCTTTCAACT-TTTTTGATAGAATCAAAGTTTGTCTCTTAAATA
* * * ** *
481065 AGACAAACGTGAATTCTCGTACTAATCCCTATTCCCTTCAGGATTAGGCACCATAAACATAGTCT
386 AGACAAACATGAATACTCATACTAATCCC-ATTCTTTTCAGGATTAGGCACCACAAACATAGTCT
* *
481130 TCTCATTAGTATACATGATATTGA
450 TCTTATTAGGATACATGATATTGA
* * * * * * * *
481154 TGCTTTGGTTTCACCAGAAAGAC-TTTTTCCCACAAATATTTGTAATGTCCAAATTCAAT-CCTC
1 TGCTTT-GTTTCACAAGAAAGGCTTTTTTCCCACCAATTTTTGTAAAGTCTAAGTTC-GTGCCTC
* * * *
481217 AAATGTGACAAACATGA-ATTCCAGTAATGATTTTCATTCATTTCGTGATTAGGCACTATAAACA
64 AAATGAGACAAACATGAGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACA
* * * ** **
481281 CATTCTCCTTATTAGGATAAATGATACTAATGATTTTCTTTCCCACAAAAATCTTTTCTTTGCCA
129 CATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGAAAATCTTTTCTTTGCC-
* *
481346 C-ATTTTCCTTAAAATCAAAGTTCATCCTTTAAAT-AGGACAAGCATCGA----CATAATAGTCT
193 CTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGGA-AAGCATCGATTCTCGTAATAGTCT
* * * * * * *
481405 CTAAGCTTTTCAAAGATTGTGAACCAAAAACATATTTCCTTCGTTAGGATGCATGACATTAATGC
257 CCAAGCTTTTC-AAGATTGGGAACCAAAAACACATTCCCTTCATTAGGATACATGACATTGATGC
* * * *
481470 TTTGGTGTCGCTAGAAAAGCTTTTCTTTGCAATTTTTTTGGTAGAATCAAAGTTTGTTTCTTAAA
321 TTTGG-GTCGCAAGAAAAGCTTTTCTTT-CAACTTTTTTGATAGAATCAAAGTTTGTCTCTTAAA
* * * * * *
481535 TAAGACAAACATGAATACTCGTATTAACCCCAATTCTTTTGAGGATTAGGCACCATAAACATTGT
384 TAAGACAAACATGAATACTCATACTAATCCC-ATTCTTTTCAGGATTAGGCACCACAAACATAGT
* * * * *
481600 TTTCTCATAAGGATATACGATATTGA
448 CTTCTTATTAGGATACATGATATTGA
* * * * * * *
481626 TGCTTTGGTTTCACCAGAAAGGC-TTTTTCCTACAAATCTTTGTAATGTCAAAATTCGAT-CCT-
1 TGCTTT-GTTTCACAAGAAAGGCTTTTTTCCCACCAATTTTTGTAAAGTCTAAGTTCG-TGCCTC
* * * *
481688 AAAAGAGACAAACATG-GATACCAGTAATGATCTTCTTTCATTTTGTGATTAGGCACTATAAACA
64 AAATGAGACAAACATGAGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACA
* * * * *
481752 CATTCTCCTCATTGGGATAAATGATAATGATGATTTTATTTTTCACGAAAATCTTTTCTTTGCCC
129 CATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGAAAATCTTTTCTTTGCCC
* ** *
481817 TATTTTTCTTAAAATCAAAGTTCATCATTTAAAT-AGGAAAAAGCATCGATTCTCATAATAGTCT
194 TATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGG--AAAGCATCGATTCTCGTAATAGTCT
*
481881 CCAAGCTTTTCAAAGATTGGGAACCAAAAACACATTCCCTTCATTATGATACATGACATT-ATTG
257 CCAAGCTTTTC-AAGATTGGGAACCAAAAACACATTCCCTTCATTAGGATACATGACATTGA-TG
* * *
481945 CTTTGGTGTTGTAAGAAAAGCTTTTCTTTCCAACTTTTTTGATAGAATCAAAGTTTGTCGCTTAA
320 CTTTGG-GTCGCAAGAAAAGCTTTTCTTT-CAACTTTTTTGATAGAATCAAAGTTTGTCTCTTAA
* *
482010 ATTAGACAAACATG-ATACTCATACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACATAG
383 ATAAGACAAACATGAATACTCATACTAAT-CCCATTCTTTTCAGGATTAGGCACCACAAACATAG
* * *
482074 TCCTCTCATCTA-GATACATGATACTCG-
447 TCTTCTTAT-TAGGATACATGATA-TTGA
* * * * * * * *
482101 TACTTTGGTGTCGCAAGAAAGGCTTTTTTTCCACCAATTTTTATGAAGTCTAAGTTCGTGCTTTA
1 TGCTTT-GTTTCACAAGAAAGGCTTTTTTCCCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCA
*
482166 AATGAGACAAACATG-GATTCTAGAAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACAC
65 AATGAGACAAACATGAGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACAC
* * * * *
482230 ATTCTCCTCATTAGGAT-AGTAGATATTGATGATTTTCTTTTGCATGGAAATCTTATCTTTGTCT
130 ATTCTCCTCATTAGGATAAAT-GATATTGATGATTTTCTTTTGCATGAAAATCTTTTCTTTGCCC
* * * *
482294 TATTGTCCTTAAAATCAATGTTCATCGCTTAAATAA-GACAAGGATCGATTCTCGTAATAGTCTC
194 TATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGGA-AAGCATCGATTCTCGTAATAGTCTC
* * * * * * * *
482358 CAATCTTTTAAAGATTGGAAACTAAAAACACATT-CTTTCAATTGGGATAAATGACGTTGATGCT
258 CAAGCTTTTCAAGATTGGGAACCAAAAACACATTCCCTTC-ATTAGGATACATGACATTGATGCT
* * * * * * * *
482422 TTGGGGTCACAAGAAATGCTTTTCTTTTTACCATTTTTGGTAGAATCCAAGTTTGCCT-TCTAAA
322 TT-GGGTCGCAAGAAAAGCTTTTC-TTTCAACTTTTTTGATAGAATCAAAGTTTGTCTCT-TAAA
* ** * * * * * * *
482486 TAAGGCAAATGTGAATACTTATGCAAATTCCCTTTCTTTTTAGGGTTAGGCACCACAAACATGGT
384 TAAGACAAACATGAATACTCATACTAA-TCCCATTCTTTTCAGGATTAGGCACCACAAACATAGT
* *
482551 CTTCTCATTAGTATACATGATATTGA
448 CTTCTTATTAGGATACATGATATTGA
* * * * * * *
482577 TGCTTTGCATTCACAAAAAAAGC-CTTTTCTCACCAATTGTTGTAAAGTCTGAGTTCGTGCCTCA
1 TGCTTTG-TTTCACAAGAAAGGCTTTTTTCCCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCA
* * * *
482641 AATGAGACAAATAAG-GATTCTAGTAATGATCTTTATTCATTTT-TGATTAGGCACTATAATCAC
65 AATGAGACAAACATGAGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACAC
* * * * * * * *
482704 ATTCTCCTTATTAAGATAAATGATACTAATTATTTTCTTTTTCACGAAAATCTTTTCTTTGCCCC
130 ATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGAAAATCTTTTCTTTGCCCT
* * *
482769 ATTTTTCTTAAAATCAAAGTTCATCCTTTAAATAA-GACAAGCATTGATTCTCGTAATAGTCTCC
195 ATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGGA-AAGCATCGATTCTCGTAATAGTCTCC
** * * * *
482833 AAGCTTTTCAAAGATTATGAACCAAAAACACATTTCCTTCATTAGGATGCATGGCATTAATGCTT
259 AAGCTTTTC-AAGATTGGGAACCAAAAACACATTCCCTTCATTAGGATACATGACATTGATGCTT
* * *
482898 TGGTGTCGCTAG-AAAGCTTTTCTTTGCAA-TGTTTTTAATAGAATCAAAGTTTCTCTCTTAAAT
323 TGG-GTCGCAAGAAAAGCTTTTCTTT-CAACT-TTTTTGATAGAATCAAAGTTTGTCTCTTAAAT
* * * * *
482961 GAGACAAACATGAATACTCGTACTAA-CCTTAATTCTTTTTAGGATTAGGCACCATAAACATAGT
385 AAGACAAACATGAATACTCATACTAATCC--CATTCTTTTCAGGATTAGGCACCACAAACATAGT
* * * * *
483025 TTTTTTATAAGGATACACGGTATTGA
448 CTTCTTATTAGGATACATGATATTGA
* * * * *
483051 TGCTCTGGTTTCGA-AAGAAAGGCTTTCTTCCCTCTAATTTTTGTTAAGTCTAAGTTCGTGCCTC
1 TGCT-TTGTTTC-ACAAGAAAGGCTTTTTTCCCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTC
483115 AAATGAG-CTAAACAT-AGATTCTAGTAATGATTCTTCATTCATTTTGTGATTAGGCACTATAAA
64 AAATGAGAC-AAACATGAGATTCTAGTAATGA-TCTTCATTCATTTTGTGATTAGGCACTATAAA
* * * * *
483178 CACATTCTCTTCATTACGATAAATGATATTGATGAATTTCTTTTGCATGGAAGTCATTTT-TTTG
127 CACATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGAAAATC-TTTTCTTTG
* * * * *
483242 CCCTATTTTCCTTAATATCAAAGTTCTTCCTTTAAATAA-GACATGCATCGATTCTTGTAACTA-
191 CCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGGA-AAGCATCGATTCTCGTAA-TAG
* * * * *
483305 TCTCCAAGCTTTTCAAAGATTGGGAACCAAAACCACATTCCTTTCATTAAGATACACGATATTGA
254 TCTCCAAGCTTTTC-AAGATTGGGAACCAAAAACACATTCCCTTCATTAGGATACATGACATTGA
*
483370 TGCTTTGGTGTCGCAGGAAAAGCTTTTCTTTCCAACTTTTTTGATAGAATCAAAGTTTGTCTCTT
318 TGCTTTGG-GTCGCAAGAAAAGCTTTTCTTT-CAACTTTTTTGATAGAATCAAAGTTTGTCTCTT
* * * *
483435 AAATAAGACAAACATGAATACTGATACTAATCTCCATTCTTTTTAGGATTAGACACCATAAACAT
381 AAATAAGACAAACATGAATACTCATACTAATC-CCATTCTTTTCAGGATTAGGCACCACAAACAT
* * * * *
483500 AGTCCTCTCATTTGGATACATGAAATTCA
445 AGTCTTCTTATTAGGATACATGATATTGA
* * * * *
483529 AGCTTTGGTTTCGCGAGAAACGC-TTTTTCCCACCAATTTTTGTAAAGTCTAAGTTCATGCCTCA
1 TGCTTT-GTTTCACAAGAAAGGCTTTTTTCCCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCA
* * *
483593 AATTG-GAGAAACATG-GATTCTAGTAATGATTTTCAATCATTTTGTGATTAGGCACTATAAACA
65 AA-TGAGACAAACATGAGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACA
* * *
483656 CATTTTCCTCATTAGGATAAATGATATTGATGATTTT-TTTTGCTTGGAAATCTTTTCTTTGCCC
129 CATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGAAAATCTTTTCTTTGCCC
* * * *
483720 TATTTTCCTTCAAATCAAAGTTCATCCCTTAAATAA-GACAAGCGTCAATTCTCGTAATAATCTC
194 TATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGGA-AAGCATCGATTCTCGTAATAGTCTC
* ** * *
483784 TATTCTTTTCAAGATTGGGAACCAAAAACATATTCCCTTCATTAGGATATATGACATTGATGCTT
258 CAAGCTTTTCAAGATTGGGAACCAAAAACACATTCCCTTCATTAGGATACATGACATTGATGCTT
* * * *
483849 TGGTTTCACAAGAAAAGCTTTTCTTTCCAACGTTTTTGATAGAATCAAAGTTTG-CTCTCAAATA
323 TGG-GTCGCAAGAAAAGCTTTTCTTT-CAACTTTTTTGATAGAATCAAAGTTTGTCTCTTAAATA
* * * * * * *
483913 AGGCAAAAGATGAACACTCATGCTAATCCCCATTCTTTTTAGGATTAGGCACCATAAGCATAGTC
386 AGAC-AAACATGAATACTCATACTAAT-CCCATTCTTTTCAGGATTAGGCACCACAAACATAGTC
* *
483978 TTCTTATTAGGATATAAGATATTGA
449 TTCTTATTAGGATACATGATATTGA
* * * * *
484003 TGCTTTGGATTCGCAAGAAAGGCTTTTTTCACACCAATTTTTGTAAAGTCTAAATTCGTGCCTTA
1 TGCTTT-GTTTCACAAGAAAGGCTTTTTTCCCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCA
* * * * *
484068 AAAGAGACAAACAT-TGATTCTAGTAGTGATTTTCATTCATTTTCTGATTAGGCACTATAAACAC
65 AATGAGACAAACATGAGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACAC
* * ** *
484132 ATTTTCCTCCTTAAGG-TACAA-GATATTGGCGATTTT-TTTTGCATGGAAATCTTTTCTTTGCC
130 ATTCTCCTCATT-AGGATA-AATGATATTGATGATTTTCTTTTGCATGAAAATCTTTTCTTTGCC
* * *
484194 CTATTTTCCTTAAAATCAAAGTTCATCCCTAAAATAA-GACAAGCAT-GAATTCTCATAGTAGTC
193 CTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGGA-AAGCATCG-ATTCTCGTAATAGTC
* ** * * * ** *
484257 TCTATTCATTTCAAGATTGGGAACCAAAAACACATTCCCTTGATTAGGATAAAAAAAATTGATGC
256 TCCAAGCTTTTCAAGATTGGGAACCAAAAACACATTCCCTTCATTAGGATACATGACATTGATGC
* * * * ** *
484322 TTTAGGGTCTCAAGAAATGCTTTTCTGTCCACTATAATTCATAGAATCAAAGTTTGTCTCTTAAA
321 TTT-GGGTCGCAAGAAAAGCTTTTCTTTCAACT-TTTTTGATAGAATCAAAGTTTGTCTCTTAAA
* * * * * *
484387 TAAGGCAAACATAAATAGTTATACTAATCCCTATTCTTTTTAGGATTAGGCACCAAAAACATAGT
384 TAAGACAAACATGAATACTCATACTAATCCC-ATTCTTTTCAGGATTAGGCACCACAAACATAGT
*
484452 CCTCTTATTAGGATAC-TCGATATTGA
448 CTTCTTATTAGGATACAT-GATATTGA
* * * * * * * *
484478 TGCCTTGGTCTCTCAAGAAAGGCTTTATTTCCC-TCAATTTTTGTAAAATCTAAGTCCGTGTCTT
1 TG-CTTTGTTTCACAAGAAAGGCTTT-TTTCCCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTC
* * *
484542 AAATGAGCCAAACATG-GATTCTAGTAATGATCTTCATTCGTTTTGTGATTAGGCACTAAAAACA
64 AAATGAGACAAACATGAGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACA
* * *
484606 CATTCTCCTCATTAGGATAAATGATACTGATGATTTTCTTTTGCATGAAAATATTTTCTTTGCCT
129 CATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGAAAATCTTTTCTTTGCCC
* **
484671 TA-TTTCTCTTAAAATCAAAGTTCATCCCTGAAATAA-GATAAGCATCGATTCTCGTAGCAGTCT
194 TATTTTC-CTTAAAATCAAAGTTCATCCCTTAAATAAGGA-AAGCATCGATTCTCGTAATAGTCT
** * *
484734 TTAAGCTATTCAAAGATAGGGAACCAAAAACACATTCCCTTCATTAGGATACATGACATT
257 CCAAGCTTTTC-AAGATTGGGAACCAAAAACACATTCCCTTCATTAGGATACATGACATT
484794 TGTTAGGATT
Statistics
Matches: 6627, Mismatches: 1077, Indels: 425
0.82 0.13 0.05
Matches are distributed among these distances:
470 19 0.00
471 195 0.03
472 196 0.03
473 282 0.04
474 1370 0.21
475 1897 0.29
476 1575 0.24
477 930 0.14
478 160 0.02
479 2 0.00
480 1 0.00
ACGTcount: A:0.32, C:0.18, G:0.14, T:0.37
Consensus pattern (473 bp):
TGCTTTGTTTCACAAGAAAGGCTTTTTTCCCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAA
ATGAGACAAACATGAGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACA
TTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGAAAATCTTTTCTTTGCCCTA
TTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGGAAAGCATCGATTCTCGTAATAGTCTCCAA
GCTTTTCAAGATTGGGAACCAAAAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGG
GTCGCAAGAAAAGCTTTTCTTTCAACTTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACA
AACATGAATACTCATACTAATCCCATTCTTTTCAGGATTAGGCACCACAAACATAGTCTTCTTAT
TAGGATACATGATATTGA
Found at i:485100 original size:20 final size:19
Alignment explanation
Indices: 485075--485145 Score: 70
Period size: 20 Copynumber: 3.6 Consensus size: 19
485065 ACCCTGAAAA
485075 GTATCGATACACATTTAAAT
1 GTATCGATACACA-TTAAAT
* **
485095 GTATCGATACAGATTGCAT
1 GTATCGATACACATTAAAT
**
485114 AGTATCGATACACACAAATAT
1 -GTATCGATACACATTAA-AT
485135 GTATCGATACA
1 GTATCGATACA
485146 GGACATTGGC
Statistics
Matches: 41, Mismatches: 8, Indels: 4
0.77 0.15 0.08
Matches are distributed among these distances:
19 4 0.10
20 35 0.85
21 2 0.05
ACGTcount: A:0.39, C:0.17, G:0.14, T:0.30
Consensus pattern (19 bp):
GTATCGATACACATTAAAT
Done.