Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold2225
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 146236
ACGTcount: A:0.35, C:0.15, G:0.14, T:0.35
File 2 of 2
Found at i:102216 original size:17 final size:17
Alignment explanation
Indices: 102191--102228 Score: 58
Period size: 17 Copynumber: 2.2 Consensus size: 17
102181 CTTATGTTAG
*
102191 CAAATAAAATATAAATT
1 CAAAAAAAATATAAATT
*
102208 CAAAAAAAATGTAAATT
1 CAAAAAAAATATAAATT
102225 CAAA
1 CAAA
102229 TGTAACGAAG
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
17 19 1.00
ACGTcount: A:0.66, C:0.08, G:0.03, T:0.24
Consensus pattern (17 bp):
CAAAAAAAATATAAATT
Found at i:102286 original size:19 final size:19
Alignment explanation
Indices: 102262--102305 Score: 70
Period size: 19 Copynumber: 2.3 Consensus size: 19
102252 AAATGTAACG
* *
102262 AATTTATTACGGTAAAATT
1 AATTTACTACGGTAAAAAT
102281 AATTTACTACGGTAAAAAT
1 AATTTACTACGGTAAAAAT
102300 AATTTA
1 AATTTA
102306 ATTGTATAGT
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
19 23 1.00
ACGTcount: A:0.45, C:0.07, G:0.09, T:0.39
Consensus pattern (19 bp):
AATTTACTACGGTAAAAAT
Found at i:103985 original size:79 final size:77
Alignment explanation
Indices: 103814--104027 Score: 204
Period size: 79 Copynumber: 2.7 Consensus size: 77
103804 AAATTTTTTT
* * * *
103814 GTTATACTTAAATTTATATTTTAGTTAGTATGAAAATAATTTTT--TGTTAACTTACTTTATTCC
1 GTTATACTTAAATTTATATTTTAATTAGTA-AAAAAT-ATTTTTCCTTTTAACTTACTTGATTCC
* *
103877 AATCTTAATTGTTA
64 AATCTTAACTATTA
* *
103891 GATTATACTTAAATTTGTATTTTAATTAGTACAAAAATATTTTTCCTTTTAACTTACTTGATTCT
1 G-TTATACTTAAATTTATATTTTAATTAGTA-AAAAATATTTTTCCTTTTAACTTACTTGATTCC
103956 AAT-TATAACTATTAA
64 AATCT-TAACTATT-A
* * * * *
103971 GTTATACTTGAATTTACAGTTTGAA-TGGTAAGAAAATATTTTTCC-TTTAATTTACTT
1 GTTATACTTAAATTTATA-TTTTAATTAGTAA-AAAATATTTTTCCTTTTAACTTACTT
104028 TATTATAAAT
Statistics
Matches: 115, Mismatches: 15, Indels: 13
0.80 0.10 0.09
Matches are distributed among these distances:
77 7 0.06
78 45 0.39
79 56 0.49
80 7 0.06
ACGTcount: A:0.34, C:0.09, G:0.08, T:0.50
Consensus pattern (77 bp):
GTTATACTTAAATTTATATTTTAATTAGTAAAAAATATTTTTCCTTTTAACTTACTTGATTCCAA
TCTTAACTATTA
Found at i:104677 original size:11 final size:12
Alignment explanation
Indices: 104656--104680 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
104646 ATTGTCCTAC
104656 AAAGAAAAAAAA
1 AAAGAAAAAAAA
104668 AAAGAAAAAAAA
1 AAAGAAAAAAAA
104680 A
1 A
104681 CAATGTTTTT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.92, C:0.00, G:0.08, T:0.00
Consensus pattern (12 bp):
AAAGAAAAAAAA
Found at i:105143 original size:62 final size:62
Alignment explanation
Indices: 105067--105190 Score: 221
Period size: 62 Copynumber: 2.0 Consensus size: 62
105057 GTTAATACAA
* * *
105067 TACCTTTGCTTTTGGATTGTACTTACGAACAATTTCACAAATTATCTTTTTTTAATTATTTT
1 TACCTTTGCTTTTGGATTATACTTACGAACAACTTCACAAATTACCTTTTTTTAATTATTTT
105129 TACCTTTGCTTTTGGATTATACTTACGAACAACTTCACAAATTACCTTTTTTTAATTATTTT
1 TACCTTTGCTTTTGGATTATACTTACGAACAACTTCACAAATTACCTTTTTTTAATTATTTT
105191 ATACTTTTAT
Statistics
Matches: 59, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
62 59 1.00
ACGTcount: A:0.27, C:0.16, G:0.07, T:0.50
Consensus pattern (62 bp):
TACCTTTGCTTTTGGATTATACTTACGAACAACTTCACAAATTACCTTTTTTTAATTATTTT
Found at i:109271 original size:24 final size:25
Alignment explanation
Indices: 109209--109278 Score: 90
Period size: 24 Copynumber: 2.8 Consensus size: 25
109199 ATTTCCTTTG
*
109209 TATTTATC-AAATATGGAGGCTTGTT
1 TATTTATCAAAAT-TGGTGGCTTGTT
109234 TATTTATCAAAATTGGTGGCTTG-T
1 TATTTATCAAAATTGGTGGCTTGTT
* *
109258 TGTTTGTCAAAATTGGTGGCT
1 TATTTATCAAAATTGGTGGCT
109279 AATTTTTATT
Statistics
Matches: 41, Mismatches: 3, Indels: 3
0.87 0.06 0.06
Matches are distributed among these distances:
24 20 0.49
25 17 0.41
26 4 0.10
ACGTcount: A:0.24, C:0.09, G:0.23, T:0.44
Consensus pattern (25 bp):
TATTTATCAAAATTGGTGGCTTGTT
Found at i:111852 original size:21 final size:22
Alignment explanation
Indices: 111823--111868 Score: 58
Period size: 21 Copynumber: 2.1 Consensus size: 22
111813 TGTTCAGACA
** *
111823 AGTAGTACTCCGCAGCAGGTGG
1 AGTAGTACTCCAAAACAGGTGG
111845 AGTA-TACTCCAAAACAGGTGG
1 AGTAGTACTCCAAAACAGGTGG
111866 AGT
1 AGT
111869 TTCAACAAAT
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
21 17 0.81
22 4 0.19
ACGTcount: A:0.30, C:0.20, G:0.30, T:0.20
Consensus pattern (22 bp):
AGTAGTACTCCAAAACAGGTGG
Found at i:113777 original size:25 final size:24
Alignment explanation
Indices: 113749--113873 Score: 88
Period size: 27 Copynumber: 4.9 Consensus size: 24
113739 AAGCCACCCA
113749 TTTGTTTGTCAAAAATGGTGGTTATT
1 TTTGTTTGTCAAAAATGGTGG-T-TT
* *
113775 TTGTGTTTGTAAAAAATGATGGTTT
1 TT-TGTTTGTCAAAAATGGTGGTTT
* * *
113800 CCTTTGTATTTGTCAAATATGGAGGCTTG
1 --TTTG--TTTGTCAAAAATGGTGG-TTT
* * *
113829 TTTATTTGTCAAAATTGGTGGCTT
1 TTTGTTTGTCAAAAATGGTGGTTT
* *
113853 GTTGTTTGTCAAAATTGGTGG
1 TTTGTTTGTCAAAAATGGTGG
113874 CTAATTTTTA
Statistics
Matches: 78, Mismatches: 15, Indels: 14
0.73 0.14 0.13
Matches are distributed among these distances:
24 20 0.26
25 16 0.21
26 5 0.06
27 22 0.28
28 13 0.17
29 2 0.03
ACGTcount: A:0.22, C:0.06, G:0.25, T:0.46
Consensus pattern (24 bp):
TTTGTTTGTCAAAAATGGTGGTTT
Found at i:113860 original size:24 final size:25
Alignment explanation
Indices: 113806--113875 Score: 99
Period size: 24 Copynumber: 2.8 Consensus size: 25
113796 GTTTCCTTTG
*
113806 TATTTGTC-AAATATGGAGGCTTGTT
1 TATTTGTCAAAAT-TGGTGGCTTGTT
113831 TATTTGTCAAAATTGGTGGCTTG-T
1 TATTTGTCAAAATTGGTGGCTTGTT
*
113855 TGTTTGTCAAAATTGGTGGCT
1 TATTTGTCAAAATTGGTGGCT
113876 AATTTTTATT
Statistics
Matches: 42, Mismatches: 2, Indels: 3
0.89 0.04 0.06
Matches are distributed among these distances:
24 21 0.50
25 17 0.40
26 4 0.10
ACGTcount: A:0.21, C:0.09, G:0.26, T:0.44
Consensus pattern (25 bp):
TATTTGTCAAAATTGGTGGCTTGTT
Found at i:115579 original size:132 final size:132
Alignment explanation
Indices: 115342--115860 Score: 948
Period size: 132 Copynumber: 3.9 Consensus size: 132
115332 CTTCAAGACT
* * *
115342 GCCTTTGCACTCAGTAAATTGTTCCTCGTCGCCGTCTTCTGCAGCTTTGAACAAGGTGATAGCCT
1 GCCTTCGCACTTAGTAAATTGTTCCTCGCCGCCGTCTTCTGCAGCTTTGAACAAGGTGATAGCCT
115407 CTGATGACAGAGGCCGTTTCATGCGATCTGTGGATGAGCTTGAGGGATCACCCAACTGCGTCCGA
66 CTGATGACAGAGGCCGTTTCATGCGATCTGTGGATGAGCTTGAGGGATCACCCAACTGCGTCCGA
115472 CC
131 CC
*
115474 GCCTTCGCACTTAGTAAATTGTTCCTCGTCGCCGTCTTCTGCAGCTTTGAACAAGGTGATAGCCT
1 GCCTTCGCACTTAGTAAATTGTTCCTCGCCGCCGTCTTCTGCAGCTTTGAACAAGGTGATAGCCT
*
115539 CTGATGACACAGGCCGTTTCATGCGATCTGTGGATGAGCTTGAGGGATCACCCAACTGCGTCCGA
66 CTGATGACAGAGGCCGTTTCATGCGATCTGTGGATGAGCTTGAGGGATCACCCAACTGCGTCCGA
115604 CC
131 CC
* *
115606 GCCTTCGTACTTAGTAAATTGTTCCTCGCCGCCGTCTTCTGCAGCTTTGAGCAAGGTGATAGCCT
1 GCCTTCGCACTTAGTAAATTGTTCCTCGCCGCCGTCTTCTGCAGCTTTGAACAAGGTGATAGCCT
115671 CTGATGACAGAGGCCGTTTCATGCGATCTGTGGATGAGCTTGAGGGATCACCCAACTGCGTCCGA
66 CTGATGACAGAGGCCGTTTCATGCGATCTGTGGATGAGCTTGAGGGATCACCCAACTGCGTCCGA
115736 CC
131 CC
* * *
115738 GCCTTCGTACTTAGTAAATTGTTCCTCGCCGCCATCTTCTGCAGCTTTGAGCAAGGTGATAGCCT
1 GCCTTCGCACTTAGTAAATTGTTCCTCGCCGCCGTCTTCTGCAGCTTTGAACAAGGTGATAGCCT
115803 CTGATGACAGAGGCCGTTTCATGCGATCTGTGGATGAGCTTGAGGGATCACCCAACTG
66 CTGATGACAGAGGCCGTTTCATGCGATCTGTGGATGAGCTTGAGGGATCACCCAACTG
115861 GGTCATTGCA
Statistics
Matches: 379, Mismatches: 8, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
132 379 1.00
ACGTcount: A:0.20, C:0.27, G:0.26, T:0.28
Consensus pattern (132 bp):
GCCTTCGCACTTAGTAAATTGTTCCTCGCCGCCGTCTTCTGCAGCTTTGAACAAGGTGATAGCCT
CTGATGACAGAGGCCGTTTCATGCGATCTGTGGATGAGCTTGAGGGATCACCCAACTGCGTCCGA
CC
Found at i:116163 original size:19 final size:19
Alignment explanation
Indices: 116127--116171 Score: 51
Period size: 18 Copynumber: 2.5 Consensus size: 19
116117 ACACATTAAC
*
116127 TATAATATATCAAAATTTA
1 TATAATATATAAAAATTTA
116146 TATAA-ATATAAAATATTT-
1 TATAATATATAAAA-ATTTA
116164 TA-AATATA
1 TATAATATA
116172 ATTATAATTA
Statistics
Matches: 23, Mismatches: 1, Indels: 5
0.79 0.03 0.17
Matches are distributed among these distances:
17 2 0.09
18 12 0.52
19 9 0.39
ACGTcount: A:0.56, C:0.02, G:0.00, T:0.42
Consensus pattern (19 bp):
TATAATATATAAAAATTTA
Found at i:116200 original size:24 final size:23
Alignment explanation
Indices: 116173--116235 Score: 58
Period size: 23 Copynumber: 2.7 Consensus size: 23
116163 TTAAATATAA
116173 TTATAATTATTT-AATTAATAAATT
1 TTATAATTATTTAAATT--TAAATT
**
116197 TTATTTTTATTTAAATTTAAATT
1 TTATAATTATTTAAATTTAAATT
*
116220 TT-TAATATATATAAAT
1 TTATAAT-TATTTAAAT
116236 ATTTTAATAT
Statistics
Matches: 32, Mismatches: 5, Indels: 5
0.76 0.12 0.12
Matches are distributed among these distances:
22 2 0.06
23 16 0.50
24 10 0.31
25 4 0.12
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (23 bp):
TTATAATTATTTAAATTTAAATT
Found at i:116249 original size:26 final size:24
Alignment explanation
Indices: 116211--116261 Score: 59
Period size: 25 Copynumber: 2.0 Consensus size: 24
116201 TTTTATTTAA
116211 ATTTAAATTTTTAATATA-TATAAAT
1 ATTTAAATTTTT-AT-TAGTATAAAT
*
116236 ATTTTAATATTTTATTAGTATAAAT
1 ATTTAAAT-TTTTATTAGTATAAAT
116261 A
1 A
116262 GTAAAAATAG
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
24 2 0.09
25 17 0.74
26 4 0.17
ACGTcount: A:0.45, C:0.00, G:0.02, T:0.53
Consensus pattern (24 bp):
ATTTAAATTTTTATTAGTATAAAT
Found at i:116485 original size:11 final size:11
Alignment explanation
Indices: 116405--116487 Score: 52
Period size: 11 Copynumber: 7.7 Consensus size: 11
116395 TTGATAATTT
116405 TAAATATAATA
1 TAAATATAATA
116416 TAATTATATAATA
1 TAA--ATATAATA
*
116429 TAAAAAATAAT-
1 T-AAATATAATA
116440 TAAA-AT-AT-
1 TAAATATAATA
* *
116448 T-ATTATGATA
1 TAAATATAATA
116458 TTAAA-ATAATA
1 -TAAATATAATA
*
116469 TGAATATAATA
1 TAAATATAATA
116480 TAAATATA
1 TAAATATA
116488 TAAATATTTT
Statistics
Matches: 57, Mismatches: 6, Indels: 18
0.70 0.07 0.22
Matches are distributed among these distances:
7 1 0.02
8 5 0.09
9 4 0.07
10 6 0.11
11 23 0.40
12 7 0.12
13 9 0.16
14 2 0.04
ACGTcount: A:0.59, C:0.00, G:0.02, T:0.39
Consensus pattern (11 bp):
TAAATATAATA
Found at i:116508 original size:28 final size:28
Alignment explanation
Indices: 116477--116556 Score: 96
Period size: 28 Copynumber: 2.9 Consensus size: 28
116467 TATGAATATA
116477 ATATAAATATATAAATATTTTAAAATTT
1 ATATAAATATATAAATATTTTAAAATTT
* *
116505 ATATAAA-AT-TTATTATTATATAAAATTT
1 ATATAAATATATAAATATT-T-TAAAATTT
116533 ATATAAATATA-AAATA-TTTAAAAT
1 ATATAAATATATAAATATTTTAAAAT
116557 AATTATAATA
Statistics
Matches: 44, Mismatches: 4, Indels: 10
0.76 0.07 0.17
Matches are distributed among these distances:
26 12 0.27
27 4 0.09
28 23 0.52
29 5 0.11
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (28 bp):
ATATAAATATATAAATATTTTAAAATTT
Found at i:116513 original size:11 final size:11
Alignment explanation
Indices: 116497--116539 Score: 51
Period size: 11 Copynumber: 4.4 Consensus size: 11
116487 ATAAATATTT
116497 TAAAATTTATA
1 TAAAATTTATA
116508 TAAAATTTAT-
1 TAAAATTTATA
116518 T---A-TTATA
1 TAAAATTTATA
116525 TAAAATTTATA
1 TAAAATTTATA
116536 TAAA
1 TAAA
116540 TATAAAATAT
Statistics
Matches: 27, Mismatches: 0, Indels: 10
0.73 0.00 0.27
Matches are distributed among these distances:
6 4 0.15
7 2 0.07
10 2 0.07
11 19 0.70
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (11 bp):
TAAAATTTATA
Found at i:116546 original size:45 final size:46
Alignment explanation
Indices: 116459--116600 Score: 132
Period size: 46 Copynumber: 3.1 Consensus size: 46
116449 ATTATGATAT
* **
116459 TAAAATAA-TATGAATATAATATAAATATATAAATATTTTAAAATTTA
1 TAAAATAATTAT-AATATAATA-AAATATATAAAAATAATAAAATTTA
* * * *
116506 TATAA-AATT-TATTATTATATAAAATTTATATAAAT-ATAAAATATT-
1 TAAAATAATTATAATA-TA-ATAAAATATATAAAAATAATAAAAT-TTA
*
116551 TAAAATAATTATAATATAATAAAATATATAAAAATAATAAAATATA
1 TAAAATAATTATAATATAATAAAATATATAAAAATAATAAAATTTA
116597 TAAA
1 TAAA
116601 TTATTAGTTC
Statistics
Matches: 76, Mismatches: 11, Indels: 17
0.73 0.11 0.16
Matches are distributed among these distances:
45 29 0.38
46 35 0.46
47 12 0.16
ACGTcount: A:0.60, C:0.00, G:0.01, T:0.39
Consensus pattern (46 bp):
TAAAATAATTATAATATAATAAAATATATAAAAATAATAAAATTTA
Found at i:116554 original size:9 final size:9
Alignment explanation
Indices: 116406--116600 Score: 84
Period size: 9 Copynumber: 21.2 Consensus size: 9
116396 TGATAATTTT
116406 AAATATAATA
1 AAATAT-ATA
*
116416 TAAT-TATA
1 AAATATATA
* *
116424 TAATATAAA
1 AAATATATA
116433 AAATA-ATTA
1 AAATATA-TA
116442 AAATAT-TA
1 AAATATATA
**
116450 TTATGATATTA
1 AAAT-ATA-TA
116461 AAATA-ATA
1 AAATATATA
*
116469 TGAATATAATA
1 -AAATAT-ATA
116480 TAAATATAT-
1 -AAATATATA
*
116489 AAATATTTTA
1 AAATA-TATA
116499 AAATTTATATA
1 AAA--TATATA
*
116510 AAATTTAT-
1 AAATATATA
* *
116518 TATTATATA
1 AAATATATA
*
116527 AAATTTATA
1 AAATATATA
*
116536 TAA-ATATA
1 AAATATATA
*
116544 AAATATTTA
1 AAATATATA
116553 AAATA-ATTA
1 AAATATA-TA
*
116562 TAATATAATA
1 AAATAT-ATA
116572 AAATATATA
1 AAATATATA
116581 AAA-ATAATA
1 AAATAT-ATA
116590 AAATATATA
1 AAATATATA
116599 AA
1 AA
116601 TTATTAGTTC
Statistics
Matches: 139, Mismatches: 26, Indels: 41
0.67 0.13 0.20
Matches are distributed among these distances:
8 32 0.23
9 67 0.48
10 18 0.13
11 20 0.14
12 2 0.01
ACGTcount: A:0.59, C:0.00, G:0.01, T:0.39
Consensus pattern (9 bp):
AAATATATA
Found at i:116562 original size:28 final size:28
Alignment explanation
Indices: 116415--116588 Score: 87
Period size: 28 Copynumber: 6.2 Consensus size: 28
116405 TAAATATAAT
* *
116415 ATAATTATATAATATAAAAAATAATTAAA
1 ATAATTATATAA-ATATAAAATATTTAAA
* * *
116444 AT-ATTAT-TATGATATTAAAATA-ATATGA
1 ATAATTATATA-AATA-TAAAATATTTA-AA
*
116472 AT-ATAATATAAATATATAAATATTTTAAA
1 ATAATTATATAAATATA-AAATA-TTTAAA
** *
116501 AT--TTATATAAA-ATTTATTATTATATAA
1 ATAATTATATAAATATAAAATATT-TA-AA
*
116528 A-ATTTATATAAATATAAAATATTTAAA
1 ATAATTATATAAATATAAAATATTTAAA
* *
116555 ATAATTATA-ATATAATAAAATATATAAAA
1 ATAATTATATAAAT-ATAAAATAT-TTAAA
116584 ATAAT
1 ATAAT
116589 AAAATATATA
Statistics
Matches: 112, Mismatches: 18, Indels: 30
0.70 0.11 0.19
Matches are distributed among these distances:
25 2 0.02
26 5 0.04
27 20 0.18
28 60 0.54
29 23 0.21
30 2 0.02
ACGTcount: A:0.58, C:0.00, G:0.01, T:0.41
Consensus pattern (28 bp):
ATAATTATATAAATATAAAATATTTAAA
Found at i:116594 original size:28 final size:27
Alignment explanation
Indices: 116539--116606 Score: 84
Period size: 28 Copynumber: 2.5 Consensus size: 27
116529 ATTTATATAA
* *
116539 ATATAAAATATTTAAAATAATTATAAT
1 ATATAAAATATTAAAAATAATTAAAAT
116566 ATAATAAAATATATAAAAATAA-TAAAAT
1 AT-ATAAAATAT-TAAAAATAATTAAAAT
*
116594 ATATAAATTATTA
1 ATATAAAATATTA
116607 GTTCCATCGA
Statistics
Matches: 36, Mismatches: 3, Indels: 5
0.82 0.07 0.11
Matches are distributed among these distances:
26 2 0.06
27 10 0.28
28 16 0.44
29 8 0.22
ACGTcount: A:0.63, C:0.00, G:0.00, T:0.37
Consensus pattern (27 bp):
ATATAAAATATTAAAAATAATTAAAAT
Found at i:118829 original size:150 final size:149
Alignment explanation
Indices: 118636--118939 Score: 491
Period size: 150 Copynumber: 2.0 Consensus size: 149
118626 CTAATACAAA
* *
118636 ATTTTAAAATTTCAAAAAATAATTATAGATAACTATAAATTTTAACAGATGACAGCATGTAATTT
1 ATTTTAAAACTTCAAAAAATAATTATAAATAACTATAAATTTTAACAGATGACAGCATGTAATTT
* * * *
118701 ACCATTAGTATATGAATATATACACTAATAGTGTGTAAAATATAAATGTAATAATTATGCTTCAA
66 ACCATTAATAAATGAATATATACACTAATAATGTATAAAA-ATAAATGTAATAATTATGCTTCAA
*
118766 GTTAATTTGAACTATGAAAT
130 GTTAATTTGAACCATGAAAT
* * *
118786 ATTTTACAACTTCAAAAAATAATTATAAATAACTATAAATTTTAATATATGACAGCATGTAATTT
1 ATTTTAAAACTTCAAAAAATAATTATAAATAACTATAAATTTTAACAGATGACAGCATGTAATTT
* *
118851 ACTATTAATAAATGAATATATACACTAATAATGTATAAAAATTAATGTAATAATTATGCTTCAAG
66 ACCATTAATAAATGAATATATACACTAATAATGTATAAAAATAAATGTAATAATTATGCTTCAAG
118916 TTAATTTGAACCATGAAAT
131 TTAATTTGAACCATGAAAT
118935 ATTTT
1 ATTTT
118940 GCAATTGAAA
Statistics
Matches: 142, Mismatches: 12, Indels: 1
0.92 0.08 0.01
Matches are distributed among these distances:
149 47 0.33
150 95 0.67
ACGTcount: A:0.46, C:0.08, G:0.08, T:0.38
Consensus pattern (149 bp):
ATTTTAAAACTTCAAAAAATAATTATAAATAACTATAAATTTTAACAGATGACAGCATGTAATTT
ACCATTAATAAATGAATATATACACTAATAATGTATAAAAATAAATGTAATAATTATGCTTCAAG
TTAATTTGAACCATGAAAT
Found at i:120301 original size:17 final size:17
Alignment explanation
Indices: 120281--120317 Score: 56
Period size: 17 Copynumber: 2.2 Consensus size: 17
120271 ATTAACGCAT
120281 TAAAAAAAAAGAAAAAG
1 TAAAAAAAAAGAAAAAG
* *
120298 TAAAGAAAAAGAAAAGG
1 TAAAAAAAAAGAAAAAG
120315 TAA
1 TAA
120318 CTCTTTTATA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.76, C:0.00, G:0.16, T:0.08
Consensus pattern (17 bp):
TAAAAAAAAAGAAAAAG
Found at i:121855 original size:5 final size:6
Alignment explanation
Indices: 121843--121871 Score: 51
Period size: 6 Copynumber: 5.0 Consensus size: 6
121833 AAAAGAAAAT
121843 TTTAAA TTT-AA TTTAAA TTTAAA TTTAAA
1 TTTAAA TTTAAA TTTAAA TTTAAA TTTAAA
121872 AAAAAATAAA
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
5 5 0.23
6 17 0.77
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (6 bp):
TTTAAA
Found at i:121857 original size:11 final size:12
Alignment explanation
Indices: 121843--121871 Score: 51
Period size: 11 Copynumber: 2.5 Consensus size: 12
121833 AAAAGAAAAT
121843 TTTAAATTT-AA
1 TTTAAATTTAAA
121854 TTTAAATTTAAA
1 TTTAAATTTAAA
121866 TTTAAA
1 TTTAAA
121872 AAAAAATAAA
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
11 9 0.53
12 8 0.47
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (12 bp):
TTTAAATTTAAA
Found at i:122661 original size:15 final size:16
Alignment explanation
Indices: 122630--122669 Score: 55
Period size: 16 Copynumber: 2.5 Consensus size: 16
122620 AGAAATTTGT
*
122630 AATAATTTTTACTAAA
1 AATAATTTTTACAAAA
122646 AATAATTTTTA-AAAA
1 AATAATTTTTACAAAA
122661 AACTAATTT
1 AA-TAATTT
122670 GGCTTATAAA
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
15 5 0.23
16 17 0.77
ACGTcount: A:0.53, C:0.05, G:0.00, T:0.42
Consensus pattern (16 bp):
AATAATTTTTACAAAA
Found at i:123260 original size:17 final size:17
Alignment explanation
Indices: 123238--123276 Score: 78
Period size: 17 Copynumber: 2.3 Consensus size: 17
123228 CTTACGTCAG
123238 CAAATAAAATGTAAATT
1 CAAATAAAATGTAAATT
123255 CAAATAAAATGTAAATT
1 CAAATAAAATGTAAATT
123272 CAAAT
1 CAAAT
123277 GTAAGGAGGT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 22 1.00
ACGTcount: A:0.59, C:0.08, G:0.05, T:0.28
Consensus pattern (17 bp):
CAAATAAAATGTAAATT
Found at i:123938 original size:15 final size:15
Alignment explanation
Indices: 123898--124002 Score: 92
Period size: 15 Copynumber: 7.0 Consensus size: 15
123888 GTAGTAAATT
*
123898 TTAATTTTAATTTAA
1 TTAATTTAAATTTAA
**
123913 AAAATTT--ATTTAA
1 TTAATTTAAATTTAA
123926 TTAATTTAAATTTAA
1 TTAATTTAAATTTAA
123941 TTTAATTT-AATTTAA
1 -TTAATTTAAATTTAA
* **
123956 TTTGATAAAAAATTTAA
1 -TTAAT-TTAAATTTAA
123973 -TAATTTAAATTTAAA
1 TTAATTTAAATTT-AA
123988 TTAATTTAAATTTAA
1 TTAATTTAAATTTAA
124003 AATAATTTCA
Statistics
Matches: 73, Mismatches: 10, Indels: 14
0.75 0.10 0.14
Matches are distributed among these distances:
13 11 0.15
14 6 0.08
15 30 0.41
16 19 0.26
17 7 0.10
ACGTcount: A:0.48, C:0.00, G:0.01, T:0.51
Consensus pattern (15 bp):
TTAATTTAAATTTAA
Found at i:123942 original size:5 final size:5
Alignment explanation
Indices: 123897--124002 Score: 69
Period size: 5 Copynumber: 21.0 Consensus size: 5
123887 TGTAGTAAAT
**
123897 TTTAA TTTTAA TTTAA -AAAA TTT-A TTTAA -TTAA TTTAAA TTTAA TTTAA
1 TTTAA -TTTAA TTTAA TTTAA TTTAA TTTAA TTTAA TTT-AA TTTAA TTTAA
*** *
123946 TTTAA TTTAA TTTGATA AAAAA TTTAA --TAA TTTAAA TTTAA ATTAA
1 TTTAA TTTAA TTT-A-A TTTAA TTTAA TTTAA TTT-AA TTTAA TTTAA
123992 TTTAAA TTTAA
1 TTT-AA TTTAA
124003 AATAATTTCA
Statistics
Matches: 78, Mismatches: 12, Indels: 21
0.70 0.11 0.19
Matches are distributed among these distances:
3 3 0.04
4 10 0.13
5 42 0.54
6 22 0.28
7 1 0.01
ACGTcount: A:0.47, C:0.00, G:0.01, T:0.52
Consensus pattern (5 bp):
TTTAA
Found at i:123947 original size:10 final size:10
Alignment explanation
Indices: 123897--124002 Score: 69
Period size: 11 Copynumber: 10.5 Consensus size: 10
123887 TGTAGTAAAT
123897 TTTAATTTTAA
1 TTTAA-TTTAA
**
123908 TTTAA-AAAA
1 TTTAATTTAA
123917 TTT-ATTTAA
1 TTTAATTTAA
123926 -TTAATTTAAA
1 TTTAATTT-AA
123936 TTTAATTTAA
1 TTTAATTTAA
123946 TTTAATTTAA
1 TTTAATTTAA
***
123956 TTTGATAAAAAA
1 TTT-A-ATTTAA
123968 TTTAA--TAA
1 TTTAATTTAA
123976 TTTAAATTTAA
1 TTT-AATTTAA
*
123987 ATTAATTTAAA
1 TTTAATTT-AA
123998 TTTAA
1 TTTAA
124003 AATAATTTCA
Statistics
Matches: 75, Mismatches: 10, Indels: 20
0.71 0.10 0.19
Matches are distributed among these distances:
8 8 0.11
9 13 0.17
10 23 0.31
11 25 0.33
12 6 0.08
ACGTcount: A:0.47, C:0.00, G:0.01, T:0.52
Consensus pattern (10 bp):
TTTAATTTAA
Found at i:124009 original size:52 final size:51
Alignment explanation
Indices: 123910--124010 Score: 134
Period size: 52 Copynumber: 2.0 Consensus size: 51
123900 AATTTTAATT
* **
123910 TAAAAAATTTATTTAATTAATTTAAATTTAATTTAATTTAATTTAATTTGA
1 TAAAAAATTTATATAATTAATTTAAATTTAATTTAATTTAAAATAATTTGA
123961 TAAAAAATTTA-ATAATTTAAATTTAAA-TTAATTTAAATTTAAAATAATTT
1 TAAAAAATTTATATAA-TT-AATTTAAATTTAATTT-AATTTAAAATAATTT
124011 CAATCTAAAA
Statistics
Matches: 44, Mismatches: 3, Indels: 5
0.85 0.06 0.10
Matches are distributed among these distances:
50 3 0.07
51 20 0.45
52 21 0.48
ACGTcount: A:0.50, C:0.00, G:0.01, T:0.50
Consensus pattern (51 bp):
TAAAAAATTTATATAATTAATTTAAATTTAATTTAATTTAAAATAATTTGA
Found at i:124019 original size:16 final size:16
Alignment explanation
Indices: 123899--124021 Score: 80
Period size: 16 Copynumber: 8.1 Consensus size: 16
123889 TAGTAAATTT
*
123899 TAATTTTAATTTAAAA
1 TAATTTAAATTTAAAA
*
123915 -AATTT--ATTT-AAT
1 TAATTTAAATTTAAAA
**
123927 TAATTTAAATTTAATT
1 TAATTTAAATTTAAAA
**
123943 TAATTT-AATTTAATT
1 TAATTTAAATTTAAAA
* **
123958 TGATAAAAAATTT--AA
1 TAAT-TTAAATTTAAAA
*
123973 TAATTTAAATTTAAAT
1 TAATTTAAATTTAAAA
123989 TAATTTAAATTTAAAA
1 TAATTTAAATTTAAAA
* *
124005 TAATTTCAATCTAAAA
1 TAATTTAAATTTAAAA
124021 T
1 T
124022 GATACGGATA
Statistics
Matches: 85, Mismatches: 14, Indels: 16
0.74 0.12 0.14
Matches are distributed among these distances:
12 2 0.02
13 9 0.11
14 6 0.07
15 24 0.28
16 39 0.46
17 5 0.06
ACGTcount: A:0.49, C:0.02, G:0.01, T:0.49
Consensus pattern (16 bp):
TAATTTAAATTTAAAA
Found at i:124069 original size:16 final size:16
Alignment explanation
Indices: 124034--124126 Score: 75
Period size: 16 Copynumber: 5.8 Consensus size: 16
124024 TACGGATATA
*
124034 AAATGATTCGAA-CTTA
1 AAATGATTCGAATC-TG
*
124050 AAATTATTCGAATCTG
1 AAATGATTCGAATCTG
*
124066 AAATGATTTGAATCTG
1 AAATGATTCGAATCTG
* *
124082 AAATAATCCGAAT-TCG
1 AAATGATTCGAATCT-G
*
124098 AAATGATTTGAA-CTTG
1 AAATGATTCGAATC-TG
*
124114 AAATGATCCGAAT
1 AAATGATTCGAAT
124127 AATTAATCCA
Statistics
Matches: 60, Mismatches: 12, Indels: 9
0.74 0.15 0.11
Matches are distributed among these distances:
15 1 0.02
16 57 0.95
17 2 0.03
ACGTcount: A:0.41, C:0.12, G:0.15, T:0.32
Consensus pattern (16 bp):
AAATGATTCGAATCTG
Found at i:124070 original size:32 final size:32
Alignment explanation
Indices: 124034--124126 Score: 109
Period size: 32 Copynumber: 2.9 Consensus size: 32
124024 TACGGATATA
* * * *
124034 AAATGATTCGAACTTAAAATTATTCGAA-TCTG
1 AAATGATTTGAACTTGAAATAATCCGAATTC-G
124066 AAATGATTTGAA-TCTGAAATAATCCGAATTCG
1 AAATGATTTGAACT-TGAAATAATCCGAATTCG
*
124098 AAATGATTTGAACTTGAAATGATCCGAAT
1 AAATGATTTGAACTTGAAATAATCCGAAT
124127 AATTAATCCA
Statistics
Matches: 53, Mismatches: 5, Indels: 6
0.83 0.08 0.09
Matches are distributed among these distances:
31 1 0.02
32 49 0.92
33 3 0.06
ACGTcount: A:0.41, C:0.12, G:0.15, T:0.32
Consensus pattern (32 bp):
AAATGATTTGAACTTGAAATAATCCGAATTCG
Found at i:125165 original size:16 final size:16
Alignment explanation
Indices: 125144--125244 Score: 85
Period size: 16 Copynumber: 6.3 Consensus size: 16
125134 CTGATTAACT
*
125144 CGAACCCGAAATGACC
1 CGAACCCAAAATGACC
* *
125160 CGAACCAAAAATGACT
1 CGAACCCAAAATGACC
125176 CGAACCCAAAATGACC
1 CGAACCCAAAATGACC
* * * *
125192 CAAACTCGAAGTGACC
1 CGAACCCAAAATGACC
* **
125208 CGAACTCAAAATGATT
1 CGAACCCAAAATGACC
* * *
125224 TGAATCCAAAATAACC
1 CGAACCCAAAATGACC
125240 CGAAC
1 CGAAC
125245 TCGAAAATAA
Statistics
Matches: 63, Mismatches: 22, Indels: 0
0.74 0.26 0.00
Matches are distributed among these distances:
16 63 1.00
ACGTcount: A:0.44, C:0.30, G:0.14, T:0.13
Consensus pattern (16 bp):
CGAACCCAAAATGACC
Found at i:125233 original size:48 final size:48
Alignment explanation
Indices: 125150--125250 Score: 132
Period size: 48 Copynumber: 2.1 Consensus size: 48
125140 AACTCGAACC
*
125150 CGAAATGACCCGAACCAAAAATGACTCGAACCCAAAATGACCCAAACT
1 CGAAATGACCCGAACCAAAAATGACTCGAACCCAAAATAACCCAAACT
* * * * *
125198 CGAAGTGACCCGAACTC-AAAATGATTTGAATCCAAAATAACCCGAACT
1 CGAAATGACCCGAAC-CAAAAATGACTCGAACCCAAAATAACCCAAACT
125246 CGAAA
1 CGAAA
125251 ATAATCTAAA
Statistics
Matches: 45, Mismatches: 7, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
48 44 0.98
49 1 0.02
ACGTcount: A:0.45, C:0.28, G:0.14, T:0.14
Consensus pattern (48 bp):
CGAAATGACCCGAACCAAAAATGACTCGAACCCAAAATAACCCAAACT
Found at i:126730 original size:21 final size:20
Alignment explanation
Indices: 126704--126769 Score: 69
Period size: 21 Copynumber: 3.1 Consensus size: 20
126694 ATATAAGGTG
* *
126704 ATAAAAAACTAAAAGGTAAAA
1 ATAAAAAAATAAAA-ATAAAA
*
126725 ATAAAAAAATTAAAATTAAAA
1 ATAAAAAAA-TAAAAATAAAA
*
126746 TTAAAAAAATAAAAAATAAAA
1 ATAAAAAAAT-AAAAATAAAA
126767 ATA
1 ATA
126770 TGGGTTGATC
Statistics
Matches: 38, Mismatches: 5, Indels: 4
0.81 0.11 0.09
Matches are distributed among these distances:
20 1 0.03
21 32 0.84
22 5 0.13
ACGTcount: A:0.76, C:0.02, G:0.03, T:0.20
Consensus pattern (20 bp):
ATAAAAAAATAAAAATAAAA
Found at i:126738 original size:15 final size:15
Alignment explanation
Indices: 126721--126767 Score: 51
Period size: 15 Copynumber: 3.2 Consensus size: 15
126711 ACTAAAAGGT
*
126721 AAAAATAAAAAA-AT
1 AAAAATAAAAAATAA
* * *
126735 TAAAATTAAAATTAA
1 AAAAATAAAAAATAA
126750 AAAAATAAAAAATAA
1 AAAAATAAAAAATAA
126765 AAA
1 AAA
126768 TATGGGTTGA
Statistics
Matches: 25, Mismatches: 7, Indels: 1
0.76 0.21 0.03
Matches are distributed among these distances:
14 9 0.36
15 16 0.64
ACGTcount: A:0.81, C:0.00, G:0.00, T:0.19
Consensus pattern (15 bp):
AAAAATAAAAAATAA
Found at i:128813 original size:127 final size:129
Alignment explanation
Indices: 128658--128907 Score: 389
Period size: 129 Copynumber: 1.9 Consensus size: 129
128648 AAAGGTTTTT
* * * *
128658 TATAATTATAATATCAATAAATAAAAATATTTTGATAC-AGAATTATAGTTATTAAGAT-ATCAA
1 TATAATTATAATATAAATAAATAAAAATATTTTGATACAAAAATTATAATTATTAAAATAAT-AA
* **
128721 TTATAATAATAAAAATAAAA-TAAAAAAATTATGTTTGATAATATAAAATAATAAATACCGTAAG
65 TTATAATAATAAAAATAAAATTAAAAAAATTATGCTCAATAATATAAAATAATAAATACCGTAAG
128785 TATAATTATAATATAAATAAATAAAAATATTTTGATACATAAAATTATAATTATTAAAATAATAA
1 TATAATTATAATATAAATAAATAAAAATATTTTGATACA-AAAATTATAATTATTAAAATAATAA
*
128850 TTATAATAATAAAAATAAAATTAAAAAAATTATGCTCAATAATTTAAAATAATAAATA
65 TTATAATAATAAAAATAAAATTAAAAAAATTATGCTCAATAATATAAAATAATAAATA
128908 TTATGAGTGT
Statistics
Matches: 111, Mismatches: 8, Indels: 5
0.90 0.06 0.04
Matches are distributed among these distances:
127 37 0.33
129 39 0.35
130 35 0.32
ACGTcount: A:0.58, C:0.03, G:0.04, T:0.35
Consensus pattern (129 bp):
TATAATTATAATATAAATAAATAAAAATATTTTGATACAAAAATTATAATTATTAAAATAATAAT
TATAATAATAAAAATAAAATTAAAAAAATTATGCTCAATAATATAAAATAATAAATACCGTAAG
Found at i:128861 original size:15 final size:15
Alignment explanation
Indices: 128824--128853 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
128814 TTTTGATACA
*
128824 TAAAATTATAATTAT
1 TAAAATAATAATTAT
128839 TAAAATAATAATTAT
1 TAAAATAATAATTAT
128854 AATAATAAAA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (15 bp):
TAAAATAATAATTAT
Found at i:129409 original size:121 final size:121
Alignment explanation
Indices: 129258--129680 Score: 639
Period size: 121 Copynumber: 3.4 Consensus size: 121
129248 AATGTAAAAT
* * * *
129258 AACAAATATCGTGAGTATAATTATAATATGAATAAATAAAAATATTTTAATACACAAAATTATAG
1 AACAAATATCGTGAGTGTAATTATAATATGAATAAATAAAAATGTTTTGATACACAGAATTATAG
*
129323 TTATTAAGATATCAATTATAATGATAGAGATAGGACTGAAAAAGCTGTGCTCGATA
66 CTATTAAGATATCAATTATAATGATAGAGATAGGACTGAAAAAGCTGTGCTCGATA
*
129379 AACAAATATCGTGAGTGTAATTATATTATGAATAAATAAAAATGTTTTGATACACAGAATTATAG
1 AACAAATATCGTGAGTGTAATTATAATATGAATAAATAAAAATGTTTTGATACACAGAATTATAG
* * * *
129444 CTATTAAAATATCAATTATAACGATAAAGATAGGACTGAAAAAGCTGTGCTCAATCATGCAGAA
66 CTATTAAGATATCAATTATAATGATAGAGATAGGACTGAAAAAGCTGTG--C--TC--G-A-TA
* *
129508 TAACAAATATCGTGAGTGTAATTATAATATGAATAAATAAAAATGTTTTGATATACAGAACTATA
1 -AACAAATATCGTGAGTGTAATTATAATATGAATAAATAAAAATGTTTTGATACACAGAATTATA
* *
129573 GCTATTAAGTTATCAATTATAATGATAGAGATATGACTGAAAAAGCTGTGCTCGATA
65 GCTATTAAGATATCAATTATAATGATAGAGATAGGACTGAAAAAGCTGTGCTCGATA
129630 AACAAATATCGTGAGTGTAATTATAATATGAATAAATAAAAATGTTTTGAT
1 AACAAATATCGTGAGTGTAATTATAATATGAATAAATAAAAATGTTTTGAT
129681 TCTAAGATAA
Statistics
Matches: 274, Mismatches: 19, Indels: 18
0.88 0.06 0.06
Matches are distributed among these distances:
121 156 0.57
122 1 0.00
123 2 0.01
124 1 0.00
125 2 0.01
126 2 0.01
127 1 0.00
128 2 0.01
129 1 0.00
130 106 0.39
ACGTcount: A:0.46, C:0.08, G:0.14, T:0.32
Consensus pattern (121 bp):
AACAAATATCGTGAGTGTAATTATAATATGAATAAATAAAAATGTTTTGATACACAGAATTATAG
CTATTAAGATATCAATTATAATGATAGAGATAGGACTGAAAAAGCTGTGCTCGATA
Found at i:129589 original size:251 final size:251
Alignment explanation
Indices: 129145--129680 Score: 838
Period size: 251 Copynumber: 2.1 Consensus size: 251
129135 AGGTTTTTTA
* ** * * *
129145 TAATTATAATACGAATAGGTAAAAATATTTTGATACATAAAATTATAGCTATTAAGATATCAATT
1 TAATTATAATATGAATAAATAAAAATGTTTTGATACACAAAATTATAGCTATTAAAATATCAATT
* * * * * *
129210 ATAATGATAGAGATAGGATTGAAAAAGTTATGCTCGATAATGTAAAATAACAAATATCGTGAGTA
66 ATAACGATAAAGATAGGACTGAAAAAGCTATGCTCAATAATGCAAAATAACAAATATCGTGAGTA
* *
129275 TAATTATAATATGAATAAATAAAAATATTTTAATACACAAAATTATAGTTATTAAGATATCAATT
131 TAATTATAATATGAATAAATAAAAATATTTTAATACACAAAACTATAGCTATTAAGATATCAATT
129340 ATAATGATAGAGATAGGACTGAAAAAGCTGTGCTCGATAAACAAATATCGTGAGTG
196 ATAATGATAGAGATAGGACTGAAAAAGCTGTGCTCGATAAACAAATATCGTGAGTG
* *
129396 TAATTATATTATGAATAAATAAAAATGTTTTGATACACAGAATTATAGCTATTAAAATATCAATT
1 TAATTATAATATGAATAAATAAAAATGTTTTGATACACAAAATTATAGCTATTAAAATATCAATT
* * * *
129461 ATAACGATAAAGATAGGACTGAAAAAGCTGTGCTCAATCATGCAGAATAACAAATATCGTGAGTG
66 ATAACGATAAAGATAGGACTGAAAAAGCTATGCTCAATAATGCAAAATAACAAATATCGTGAGTA
* * * * *
129526 TAATTATAATATGAATAAATAAAAATGTTTTGATATACAGAACTATAGCTATTAAGTTATCAATT
131 TAATTATAATATGAATAAATAAAAATATTTTAATACACAAAACTATAGCTATTAAGATATCAATT
*
129591 ATAATGATAGAGATATGACTGAAAAAGCTGTGCTCGATAAACAAATATCGTGAGTG
196 ATAATGATAGAGATAGGACTGAAAAAGCTGTGCTCGATAAACAAATATCGTGAGTG
129647 TAATTATAATATGAATAAATAAAAATGTTTTGAT
1 TAATTATAATATGAATAAATAAAAATGTTTTGAT
129681 TCTAAGATAA
Statistics
Matches: 258, Mismatches: 27, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
251 258 1.00
ACGTcount: A:0.46, C:0.07, G:0.14, T:0.32
Consensus pattern (251 bp):
TAATTATAATATGAATAAATAAAAATGTTTTGATACACAAAATTATAGCTATTAAAATATCAATT
ATAACGATAAAGATAGGACTGAAAAAGCTATGCTCAATAATGCAAAATAACAAATATCGTGAGTA
TAATTATAATATGAATAAATAAAAATATTTTAATACACAAAACTATAGCTATTAAGATATCAATT
ATAATGATAGAGATAGGACTGAAAAAGCTGTGCTCGATAAACAAATATCGTGAGTG
Found at i:134488 original size:25 final size:25
Alignment explanation
Indices: 134441--134494 Score: 65
Period size: 25 Copynumber: 2.2 Consensus size: 25
134431 AAAGTTACTT
* *
134441 TATTTTAATTTTATTTATTAAATTA
1 TATTTAAATTTTATTTATAAAATTA
*
134466 TATTTAAATTTGTATTT-TAAAATTT
1 TATTTAAATTT-TATTTATAAAATTA
134491 TATT
1 TATT
134495 ATTTTGATTG
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
25 20 0.80
26 5 0.20
ACGTcount: A:0.35, C:0.00, G:0.02, T:0.63
Consensus pattern (25 bp):
TATTTAAATTTTATTTATAAAATTA
Found at i:135197 original size:3 final size:3
Alignment explanation
Indices: 135189--135213 Score: 50
Period size: 3 Copynumber: 8.3 Consensus size: 3
135179 AATATAAATA
135189 AAT AAT AAT AAT AAT AAT AAT AAT A
1 AAT AAT AAT AAT AAT AAT AAT AAT A
135214 GAAGATTCAC
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 22 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (3 bp):
AAT
Found at i:144951 original size:21 final size:21
Alignment explanation
Indices: 144925--144968 Score: 63
Period size: 22 Copynumber: 2.1 Consensus size: 21
144915 AAAAGTTTCC
144925 ATGCA-TTATCCTTTTATTATT
1 ATGCATTTATCCTTTTATT-TT
*
144946 ATGCATTTATTCTTTTATTTT
1 ATGCATTTATCCTTTTATTTT
144967 AT
1 AT
144969 TTTTTATCGC
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
21 9 0.43
22 12 0.57
ACGTcount: A:0.23, C:0.11, G:0.05, T:0.61
Consensus pattern (21 bp):
ATGCATTTATCCTTTTATTTT
Done.