Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold223
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 4172444
ACGTcount: A:0.34, C:0.15, G:0.15, T:0.34
Warning! 17292 characters in sequence are not A, C, G, or T
File 1 of 26
Found at i:4429 original size:11 final size:12
Alignment explanation
Indices: 4409--4453 Score: 51
Period size: 11 Copynumber: 4.0 Consensus size: 12
4399 CCTTTGATTT
4409 TAATTTATATTA
1 TAATTTATATTA
*
4421 TAA-TTATATTT
1 TAATTTATATTA
*
4432 TAATTTATA-TG
1 TAATTTATATTA
4443 TAATTT-TATTA
1 TAATTTATATTA
4454 ATTAAATTAA
Statistics
Matches: 28, Mismatches: 3, Indels: 5
0.78 0.08 0.14
Matches are distributed among these distances:
10 2 0.07
11 18 0.64
12 8 0.29
ACGTcount: A:0.38, C:0.00, G:0.02, T:0.60
Consensus pattern (12 bp):
TAATTTATATTA
Found at i:4439 original size:12 final size:12
Alignment explanation
Indices: 4405--4441 Score: 58
Period size: 12 Copynumber: 3.2 Consensus size: 12
4395 AACACCTTTG
4405 ATTTTAATTTAT
1 ATTTTAATTTAT
*
4417 ATTATAA-TTAT
1 ATTTTAATTTAT
4428 ATTTTAATTTAT
1 ATTTTAATTTAT
4440 AT
1 AT
4442 GTAATTTTAT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
11 10 0.45
12 12 0.55
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (12 bp):
ATTTTAATTTAT
Found at i:10229 original size:12 final size:12
Alignment explanation
Indices: 10212--10238 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
10202 CAAGTTTTCA
10212 CATTCTCTAGCT
1 CATTCTCTAGCT
10224 CATTCTCTAGCT
1 CATTCTCTAGCT
10236 CAT
1 CAT
10239 CAACCCTTAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.19, C:0.33, G:0.07, T:0.41
Consensus pattern (12 bp):
CATTCTCTAGCT
Found at i:11584 original size:2 final size:2
Alignment explanation
Indices: 11579--11611 Score: 66
Period size: 2 Copynumber: 16.5 Consensus size: 2
11569 ATATATATAT
11579 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG A
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG A
11612 TAAGGTTGCT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.52, C:0.00, G:0.48, T:0.00
Consensus pattern (2 bp):
AG
Found at i:11754 original size:2 final size:2
Alignment explanation
Indices: 11747--11786 Score: 62
Period size: 2 Copynumber: 20.0 Consensus size: 2
11737 TACTACCATA
* *
11747 AT AT AT AT AC AT AT AT AT AT AT AT AT CT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
11787 GAATATGACG
Statistics
Matches: 34, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
2 34 1.00
ACGTcount: A:0.47, C:0.05, G:0.00, T:0.47
Consensus pattern (2 bp):
AT
Found at i:15616 original size:4 final size:4
Alignment explanation
Indices: 15607--15636 Score: 60
Period size: 4 Copynumber: 7.5 Consensus size: 4
15597 ACGTGCTTCA
15607 TTAT TTAT TTAT TTAT TTAT TTAT TTAT TT
1 TTAT TTAT TTAT TTAT TTAT TTAT TTAT TT
15637 TTGCTGCATA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 26 1.00
ACGTcount: A:0.23, C:0.00, G:0.00, T:0.77
Consensus pattern (4 bp):
TTAT
Found at i:18948 original size:5 final size:5
Alignment explanation
Indices: 18927--18965 Score: 60
Period size: 5 Copynumber: 7.8 Consensus size: 5
18917 ATTACCCTGC
* *
18927 TTTGG TTTAG TTTGG TTCGG TTTGG TTTGG TTTGG TTTG
1 TTTGG TTTGG TTTGG TTTGG TTTGG TTTGG TTTGG TTTG
18966 ATTGCTGTAG
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
5 30 1.00
ACGTcount: A:0.03, C:0.03, G:0.36, T:0.59
Consensus pattern (5 bp):
TTTGG
Found at i:20057 original size:6 final size:6
Alignment explanation
Indices: 20034--20081 Score: 50
Period size: 6 Copynumber: 8.7 Consensus size: 6
20024 GAAACTGTCA
* *
20034 TTATAA TTATAT TTATAT TTATAT TT-T-T TTATAT AT-TAT TTAT-T
1 TTATAT TTATAT TTATAT TTATAT TTATAT TTATAT TTATAT TTATAT
20078 TTAT
1 TTAT
20082 TTATAGTATA
Statistics
Matches: 36, Mismatches: 3, Indels: 7
0.78 0.07 0.15
Matches are distributed among these distances:
4 3 0.08
5 11 0.31
6 22 0.61
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (6 bp):
TTATAT
Found at i:20066 original size:16 final size:16
Alignment explanation
Indices: 20043--20086 Score: 56
Period size: 15 Copynumber: 2.9 Consensus size: 16
20033 ATTATAATTA
20043 TATTTATATTTATATT
1 TATTTATATTTATATT
* *
20059 TTTTTATATAT-TATT
1 TATTTATATTTATATT
20074 TATTT-TATTTATA
1 TATTTATATTTATA
20087 GTATAATTTC
Statistics
Matches: 23, Mismatches: 4, Indels: 3
0.77 0.13 0.10
Matches are distributed among these distances:
14 4 0.17
15 10 0.43
16 9 0.39
ACGTcount: A:0.30, C:0.00, G:0.00, T:0.70
Consensus pattern (16 bp):
TATTTATATTTATATT
Found at i:20068 original size:18 final size:20
Alignment explanation
Indices: 20047--20086 Score: 57
Period size: 19 Copynumber: 2.1 Consensus size: 20
20037 TAATTATATT
20047 TATATT-TATATTTT-TTTA
1 TATATTATATATTTTATTTA
*
20065 TATATTATTTATTTTATTTA
1 TATATTATATATTTTATTTA
20085 TA
1 TA
20087 GTATAATTTC
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
18 6 0.32
19 7 0.37
20 6 0.32
ACGTcount: A:0.30, C:0.00, G:0.00, T:0.70
Consensus pattern (20 bp):
TATATTATATATTTTATTTA
Found at i:20101 original size:21 final size:19
Alignment explanation
Indices: 20055--20102 Score: 51
Period size: 21 Copynumber: 2.4 Consensus size: 19
20045 TTTATATTTA
* *
20055 TATTTTTTTATATATTATT
1 TATTTATTTATATATAATT
20074 TATTTTATTTATAGTATAATT
1 TA-TTTATTTATA-TATAATT
20095 TCATTTAT
1 T-ATTTAT
20103 AATATATTTT
Statistics
Matches: 24, Mismatches: 2, Indels: 4
0.80 0.07 0.13
Matches are distributed among these distances:
19 2 0.08
20 9 0.38
21 12 0.50
22 1 0.04
ACGTcount: A:0.29, C:0.02, G:0.02, T:0.67
Consensus pattern (19 bp):
TATTTATTTATATATAATT
Found at i:20164 original size:24 final size:23
Alignment explanation
Indices: 20041--20165 Score: 64
Period size: 24 Copynumber: 5.2 Consensus size: 23
20031 TCATTATAAT
*
20041 TATATTTA-TATTTATAT-TTT-
1 TATATATATTATTTATATATTTA
* *
20061 TTTATATATTATTTATTTTATTTA
1 TATATATATTATTTA-TATATTTA
20085 TAGTATA-ATTTCATTTATAATATATT-
1 TA-TATATA-TT-ATTTAT-ATAT-TTA
*
20111 T-TATATATTATGTTAAAATTATTTTAA
1 TATATATATTAT-TT-ATA-TA-TTT-A
20138 TATATAATATTATTTATATATTTA
1 TATAT-ATATTATTTATATATTTA
20162 TATA
1 TATA
20166 AAAAAAGAAA
Statistics
Matches: 80, Mismatches: 7, Indels: 32
0.67 0.06 0.27
Matches are distributed among these distances:
20 6 0.08
21 6 0.08
22 2 0.03
23 5 0.06
24 16 0.20
25 16 0.20
26 12 0.15
27 5 0.06
28 5 0.06
29 7 0.09
ACGTcount: A:0.37, C:0.01, G:0.02, T:0.61
Consensus pattern (23 bp):
TATATATATTATTTATATATTTA
Found at i:20683 original size:16 final size:16
Alignment explanation
Indices: 20659--20694 Score: 54
Period size: 16 Copynumber: 2.2 Consensus size: 16
20649 GATTCTTATC
* *
20659 ATTTGAAGTTTAGATT
1 ATTTCAAGTTCAGATT
20675 ATTTCAAGTTCAGATT
1 ATTTCAAGTTCAGATT
20691 ATTT
1 ATTT
20695 TAATTTTGGA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.31, C:0.06, G:0.14, T:0.50
Consensus pattern (16 bp):
ATTTCAAGTTCAGATT
Found at i:21195 original size:2 final size:2
Alignment explanation
Indices: 21188--21217 Score: 51
Period size: 2 Copynumber: 15.0 Consensus size: 2
21178 CTTTCAAAAT
*
21188 TA TA TA TA TA TA TA TA TA TG TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
21218 GATCATCTAT
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.47, C:0.00, G:0.03, T:0.50
Consensus pattern (2 bp):
TA
Found at i:21955 original size:28 final size:30
Alignment explanation
Indices: 21924--21994 Score: 78
Period size: 30 Copynumber: 2.4 Consensus size: 30
21914 GGTAATTCAA
21924 TATTTATTTTTTAGCTGTT-AAATTGT-AT
1 TATTTATTTTTTAGCTGTTAAAATTGTAAT
* *
21952 TATTATTATTTTTT-GGTGTTAAAATTTTAAT
1 TA-T-TTATTTTTTAGCTGTTAAAATTGTAAT
21983 TA-TTATTTTTTA
1 TATTTATTTTTTA
21995 ACAGTAAATT
Statistics
Matches: 36, Mismatches: 2, Indels: 9
0.77 0.04 0.19
Matches are distributed among these distances:
28 11 0.31
29 6 0.17
30 15 0.42
31 4 0.11
ACGTcount: A:0.27, C:0.01, G:0.08, T:0.63
Consensus pattern (30 bp):
TATTTATTTTTTAGCTGTTAAAATTGTAAT
Found at i:21985 original size:31 final size:30
Alignment explanation
Indices: 21927--21994 Score: 88
Period size: 28 Copynumber: 2.3 Consensus size: 30
21917 AATTCAATAT
21927 TTATTTTTTAGCTGTTAAATTGTATTATTA
1 TTATTTTTTAGCTGTTAAATTGTATTATTA
* *
21957 TTATTTTTT-GGTGTTAAAATT-T-TAATTA
1 TTATTTTTTAGCTGTT-AAATTGTATTATTA
21985 TTATTTTTTA
1 TTATTTTTTA
21995 ACAGTAAATT
Statistics
Matches: 34, Mismatches: 2, Indels: 5
0.83 0.05 0.12
Matches are distributed among these distances:
28 14 0.41
29 6 0.18
30 14 0.41
ACGTcount: A:0.26, C:0.01, G:0.09, T:0.63
Consensus pattern (30 bp):
TTATTTTTTAGCTGTTAAATTGTATTATTA
Found at i:27046 original size:15 final size:15
Alignment explanation
Indices: 26999--27048 Score: 55
Period size: 15 Copynumber: 3.3 Consensus size: 15
26989 CACTACTGAC
*
26999 CCTGTCCATCCACCA
1 CCTGTGCATCCACCA
* **
27014 CCCGTGCATCCATAA
1 CCTGTGCATCCACCA
*
27029 CCTGTGCATCTACCA
1 CCTGTGCATCCACCA
27044 CCTGT
1 CCTGT
27049 TTACCCACCT
Statistics
Matches: 27, Mismatches: 8, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
15 27 1.00
ACGTcount: A:0.20, C:0.44, G:0.12, T:0.24
Consensus pattern (15 bp):
CCTGTGCATCCACCA
Found at i:27187 original size:27 final size:27
Alignment explanation
Indices: 27144--27202 Score: 82
Period size: 27 Copynumber: 2.2 Consensus size: 27
27134 ACCATATTTC
* * **
27144 CCTACTCAATCTTCATACCCGTCATAT
1 CCTACTCAACCTCCATACCCAACATAT
27171 CCTACTCAACCTCCATACCCAACATAT
1 CCTACTCAACCTCCATACCCAACATAT
27198 CCTAC
1 CCTAC
27203 CATGACCTAG
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 28 1.00
ACGTcount: A:0.29, C:0.42, G:0.02, T:0.27
Consensus pattern (27 bp):
CCTACTCAACCTCCATACCCAACATAT
Found at i:27570 original size:36 final size:36
Alignment explanation
Indices: 27521--27714 Score: 149
Period size: 36 Copynumber: 5.2 Consensus size: 36
27511 CTCGGATTAG
*
27521 TTGTTGATAGTAGTAATGTGAAATATGCAGAAACAT
1 TTGTTGATAGTAGTAATGTGAAATATGCAGAAATAT
* * * * * * *
27557 TTGTTGATTGTAGTTATCGTGCAGATTAT-CTCGGATTAG
1 TTGTTGATAGTAGTAAT-GTG-A-AATATGC-AGAAATAT
*
27596 TTGTTGATAGTAGCAATGTGAAATATGCAGAAATAT
1 TTGTTGATAGTAGTAATGTGAAATATGCAGAAATAT
* * * * *
27632 TTGTTGATTGTAGTTATCGTGCAAATTATCTCAG-ATTAG
1 TTGTTGATAGTAGTAAT-GTG-AAA-TAT-GCAGAAATAT
* * *
27671 TTGTTGATAGTAGTACTGTGAAATATGCTGAAACAT
1 TTGTTGATAGTAGTAATGTGAAATATGCAGAAATAT
27707 TTGTTGAT
1 TTGTTGAT
27715 TGTAATTCAT
Statistics
Matches: 118, Mismatches: 30, Indels: 20
0.70 0.18 0.12
Matches are distributed among these distances:
35 2 0.02
36 50 0.42
37 11 0.09
38 11 0.09
39 41 0.35
40 3 0.03
ACGTcount: A:0.30, C:0.08, G:0.23, T:0.39
Consensus pattern (36 bp):
TTGTTGATAGTAGTAATGTGAAATATGCAGAAATAT
Found at i:27600 original size:39 final size:37
Alignment explanation
Indices: 27501--27690 Score: 127
Period size: 36 Copynumber: 5.1 Consensus size: 37
27491 ATATGAAATA
27501 TGCAGATTATCTCGGATTAGTTGTTGATAGTAGTAATG
1 TGCA-ATTATCTCGGATTAGTTGTTGATAGTAGTAATG
* * * ** * * *
27539 TG-AAATATGC-AGAAACATTTGTTGATTGTAGTTATCG
1 TGCAATTAT-CTCGGATTAGTTGTTGATAGTAGTAAT-G
*
27576 TGCAGATTATCTCGGATTAGTTGTTGATAGTAGCAATG
1 TGCA-ATTATCTCGGATTAGTTGTTGATAGTAGTAATG
* * * * * * *
27614 TG-AAATATGC-AGAAATATTTGTTGATTGTAGTTATCG
1 TGCAATTAT-CTCGGATTAGTTGTTGATAGTAGTAAT-G
* *
27651 TGCAAATTATCTCAGATTAGTTGTTGATAGTAGTACTG
1 TGC-AATTATCTCGGATTAGTTGTTGATAGTAGTAATG
27689 TG
1 TG
27691 AAATATGCTG
Statistics
Matches: 108, Mismatches: 34, Indels: 20
0.67 0.21 0.12
Matches are distributed among these distances:
36 44 0.41
37 10 0.09
38 11 0.10
39 43 0.40
ACGTcount: A:0.29, C:0.08, G:0.24, T:0.39
Consensus pattern (37 bp):
TGCAATTATCTCGGATTAGTTGTTGATAGTAGTAATG
Found at i:27605 original size:75 final size:75
Alignment explanation
Indices: 27501--27718 Score: 382
Period size: 75 Copynumber: 2.9 Consensus size: 75
27491 ATATGAAATA
27501 TGCAGATTATCTCGGATTAGTTGTTGATAGTAGTAATGTGAAATATGCAGAAACATTTGTTGATT
1 TGCAGATTATCTCGGATTAGTTGTTGATAGTAGTAATGTGAAATATGCAGAAACATTTGTTGATT
27566 GTAGTTATCG
66 GTAGTTATCG
* *
27576 TGCAGATTATCTCGGATTAGTTGTTGATAGTAGCAATGTGAAATATGCAGAAATATTTGTTGATT
1 TGCAGATTATCTCGGATTAGTTGTTGATAGTAGTAATGTGAAATATGCAGAAACATTTGTTGATT
27641 GTAGTTATCG
66 GTAGTTATCG
* * * *
27651 TGCAAATTATCTCAGATTAGTTGTTGATAGTAGTACTGTGAAATATGCTGAAACATTTGTTGATT
1 TGCAGATTATCTCGGATTAGTTGTTGATAGTAGTAATGTGAAATATGCAGAAACATTTGTTGATT
27716 GTA
66 GTA
27719 ATTCATGTAG
Statistics
Matches: 135, Mismatches: 8, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
75 135 1.00
ACGTcount: A:0.30, C:0.08, G:0.23, T:0.39
Consensus pattern (75 bp):
TGCAGATTATCTCGGATTAGTTGTTGATAGTAGTAATGTGAAATATGCAGAAACATTTGTTGATT
GTAGTTATCG
Found at i:34755 original size:2 final size:2
Alignment explanation
Indices: 34748--34789 Score: 84
Period size: 2 Copynumber: 21.0 Consensus size: 2
34738 TAATTAATTG
34748 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
34790 GTTTGCCTTT
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 40 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:35221 original size:2 final size:2
Alignment explanation
Indices: 35214--35238 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
35204 TATTTTCTCT
35214 TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA T
35239 TCATAATTGA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:37382 original size:147 final size:147
Alignment explanation
Indices: 37108--37498 Score: 611
Period size: 147 Copynumber: 2.6 Consensus size: 147
37098 GATGAAACGA
* * *
37108 TAATCCGAGATAATCTGTACGATAATTACAATCAACAAATATTTCAGTATATTTCACAGTACTAC
1 TAATCCGAGATAATCTGCACGATAACTACAATCAACAAATATTTCTGTATATTTCACA-T--TAC
*
37173 TATCAACAACTAATCCGAGATAATCTGCACGATAACTACAATCAACAAATGTTTCTGTATATTTC
63 TATCAACAACTAATCCGAGATAATCTGCACGATAACTACAATCAACAAATGTTTCTGCATATTTC
37238 ACATTACTACTATCAACAAC
128 ACATTACTACTATCAACAAC
* * *
37258 TAATCCGCGATAATCTGCACGATAACTGCAATCAACAAATATTTCTGCATATTTCACATTACTAT
1 TAATCCGAGATAATCTGCACGATAACTACAATCAACAAATATTTCTGTATATTTCACATTACTAT
* **
37323 CAACAACTCATCTAAGATAATCTGCACGATAACTACAATCAACAAATGTTTCTGCATATTTCACA
66 CAACAACTAATCCGAGATAATCTGCACGATAACTACAATCAACAAATGTTTCTGCATATTTCACA
*
37388 TTACTACTATCAATAAC
131 TTACTACTATCAACAAC
**
37405 TAATCCGAGATAATCTGCATAATAACTACAATCAACAAATATTTCTGTATATTTCACATTACTAT
1 TAATCCGAGATAATCTGCACGATAACTACAATCAACAAATATTTCTGTATATTTCACATTAC---
37470 TATCAACAACTAATCCGAGATAATCTGCA
63 TATCAACAACTAATCCGAGATAATCTGCA
37499 TATTTTACAT
Statistics
Matches: 219, Mismatches: 19, Indels: 6
0.90 0.08 0.02
Matches are distributed among these distances:
147 140 0.64
149 1 0.00
150 78 0.36
ACGTcount: A:0.39, C:0.22, G:0.08, T:0.31
Consensus pattern (147 bp):
TAATCCGAGATAATCTGCACGATAACTACAATCAACAAATATTTCTGTATATTTCACATTACTAT
CAACAACTAATCCGAGATAATCTGCACGATAACTACAATCAACAAATGTTTCTGCATATTTCACA
TTACTACTATCAACAAC
Found at i:37500 original size:75 final size:75
Alignment explanation
Indices: 37108--37498 Score: 608
Period size: 75 Copynumber: 5.3 Consensus size: 75
37098 GATGAAACGA
* * * *
37108 TAATCCGAGATAATCTGTACGATAATTACAATCAACAAATATTTCAGTATATTTCACAGTACTAC
1 TAATCCGAGATAATCTGCACGATAACTACAATCAACAAATATTTCTGTATATTTCACATTACTAC
37173 TATCAACAAC
66 TATCAACAAC
*
37183 TAATCCGAGATAATCTGCACGATAACTACAATCAACAAATGTTTCTGTATATTTCACATTACTAC
1 TAATCCGAGATAATCTGCACGATAACTACAATCAACAAATATTTCTGTATATTTCACATTACTAC
37248 TATCAACAAC
66 TATCAACAAC
* * *
37258 TAATCCGCGATAATCTGCACGATAACTGCAATCAACAAATATTTCTGCATATTTCACA-T--TAC
1 TAATCCGAGATAATCTGCACGATAACTACAATCAACAAATATTTCTGTATATTTCACATTACTAC
37320 TATCAACAAC
66 TATCAACAAC
* ** * *
37330 TCATCTAAGATAATCTGCACGATAACTACAATCAACAAATGTTTCTGCATATTTCACATTACTAC
1 TAATCCGAGATAATCTGCACGATAACTACAATCAACAAATATTTCTGTATATTTCACATTACTAC
*
37395 TATCAATAAC
66 TATCAACAAC
** *
37405 TAATCCGAGATAATCTGCATAATAACTACAATCAACAAATATTTCTGTATATTTCACATTACTAT
1 TAATCCGAGATAATCTGCACGATAACTACAATCAACAAATATTTCTGTATATTTCACATTACTAC
37470 TATCAACAAC
66 TATCAACAAC
37480 TAATCCGAGATAATCTGCA
1 TAATCCGAGATAATCTGCA
37499 TATTTTACAT
Statistics
Matches: 288, Mismatches: 25, Indels: 6
0.90 0.08 0.02
Matches are distributed among these distances:
72 65 0.23
73 1 0.00
74 1 0.00
75 221 0.77
ACGTcount: A:0.39, C:0.22, G:0.08, T:0.31
Consensus pattern (75 bp):
TAATCCGAGATAATCTGCACGATAACTACAATCAACAAATATTTCTGTATATTTCACATTACTAC
TATCAACAAC
Found at i:41164 original size:52 final size:52
Alignment explanation
Indices: 41018--41146 Score: 231
Period size: 52 Copynumber: 2.5 Consensus size: 52
41008 CGAAATATGA
41018 AAATTTGCCTGCATGTATCGATACATTTCATAGTGTATCGATACATCTGGGC
1 AAATTTGCCTGCATGTATCGATACATTTCATAGTGTATCGATACATCTGGGC
* * *
41070 AAATTTGCCTGCATGTATCAATACATTTTATAGTGTATCGATATATCTGGGC
1 AAATTTGCCTGCATGTATCGATACATTTCATAGTGTATCGATACATCTGGGC
41122 AAATTTGCCTGCATGTATCGATACA
1 AAATTTGCCTGCATGTATCGATACA
41147 AAGATCAGTG
Statistics
Matches: 73, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
52 73 1.00
ACGTcount: A:0.29, C:0.18, G:0.18, T:0.36
Consensus pattern (52 bp):
AAATTTGCCTGCATGTATCGATACATTTCATAGTGTATCGATACATCTGGGC
Found at i:41173 original size:13 final size:13
Alignment explanation
Indices: 41155--41179 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
41145 CAAAGATCAG
41155 TGTATCGATACAA
1 TGTATCGATACAA
41168 TGTATCGATACA
1 TGTATCGATACA
41180 TTTGAGTAAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:41246 original size:19 final size:18
Alignment explanation
Indices: 41222--41351 Score: 110
Period size: 19 Copynumber: 7.8 Consensus size: 18
41212 TAGCTTACAT
41222 TGTATCGATACAAAACTTA
1 TGTATCGATAC-AAACTTA
41241 TGTATCGATAC--A--T-
1 TGTATCGATACAAACTTA
41254 TGTATCGATACAACACTTA
1 TGTATCGATACAA-ACTTA
41273 TGTATCGATAC--A--T-
1 TGTATCGATACAAACTTA
41286 TGTATCGATACAACACTTA
1 TGTATCGATACAA-ACTTA
41305 TGTATCGATAC--A--T-
1 TGTATCGATACAAACTTA
41318 TGTATCGATACAACACTTTA
1 TGTATCGATACAA-AC-TTA
41338 TGTATCGATACAAA
1 TGTATCGATACAAA
41352 TCATTGAAAT
Statistics
Matches: 92, Mismatches: 0, Indels: 38
0.71 0.00 0.29
Matches are distributed among these distances:
13 33 0.36
14 3 0.03
16 6 0.07
18 2 0.02
19 35 0.38
20 13 0.14
ACGTcount: A:0.36, C:0.18, G:0.12, T:0.34
Consensus pattern (18 bp):
TGTATCGATACAAACTTA
Found at i:41258 original size:32 final size:32
Alignment explanation
Indices: 41217--41349 Score: 248
Period size: 32 Copynumber: 4.1 Consensus size: 32
41207 AGCAGTAGCT
*
41217 TACATTGTATCGATACAAAACTTATGTATCGA
1 TACATTGTATCGATACAACACTTATGTATCGA
41249 TACATTGTATCGATACAACACTTATGTATCGA
1 TACATTGTATCGATACAACACTTATGTATCGA
41281 TACATTGTATCGATACAACACTTATGTATCGA
1 TACATTGTATCGATACAACACTTATGTATCGA
41313 TACATTGTATCGATACAACACTTTATGTATCGA
1 TACATTGTATCGATACAACAC-TTATGTATCGA
41346 TACA
1 TACA
41350 AATCATTGAA
Statistics
Matches: 99, Mismatches: 1, Indels: 1
0.98 0.01 0.01
Matches are distributed among these distances:
32 84 0.85
33 15 0.15
ACGTcount: A:0.35, C:0.18, G:0.12, T:0.35
Consensus pattern (32 bp):
TACATTGTATCGATACAACACTTATGTATCGA
Found at i:41259 original size:13 final size:13
Alignment explanation
Indices: 41241--41329 Score: 70
Period size: 13 Copynumber: 5.9 Consensus size: 13
41231 ACAAAACTTA
41241 TGTATCGATACAT
1 TGTATCGATACAT
41254 TGTATCGATACAACACTT
1 TGTATCGAT---ACA--T
41272 ATGTATCGATACAT
1 -TGTATCGATACAT
41286 TGTATCGATACAACACTT
1 TGTATCGAT---ACA--T
41304 ATGTATCGATACAT
1 -TGTATCGATACAT
41318 TGTATCGATACA
1 TGTATCGATACA
41330 ACACTTTATG
Statistics
Matches: 64, Mismatches: 0, Indels: 24
0.73 0.00 0.27
Matches are distributed among these distances:
13 30 0.47
14 2 0.03
16 12 0.19
18 2 0.03
19 18 0.28
ACGTcount: A:0.34, C:0.18, G:0.13, T:0.35
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:43971 original size:3 final size:3
Alignment explanation
Indices: 43963--43990 Score: 56
Period size: 3 Copynumber: 9.3 Consensus size: 3
43953 TTTAACACAA
43963 AAT AAT AAT AAT AAT AAT AAT AAT AAT A
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT A
43991 CAATTAAAAA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 25 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (3 bp):
AAT
Found at i:46239 original size:17 final size:15
Alignment explanation
Indices: 46217--46255 Score: 51
Period size: 17 Copynumber: 2.5 Consensus size: 15
46207 TATTATTAAA
46217 ATAAATAATTATAAATT
1 ATAAATAATTA-AAA-T
*
46234 ATAAATTATTAAAAT
1 ATAAATAATTAAAAT
46249 ATAAATA
1 ATAAATA
46256 TGTATGTTTA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
15 7 0.35
16 3 0.15
17 10 0.50
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (15 bp):
ATAAATAATTAAAAT
Found at i:46246 original size:15 final size:15
Alignment explanation
Indices: 46208--46254 Score: 60
Period size: 15 Copynumber: 3.1 Consensus size: 15
46198 TTTATTAATT
*
46208 ATTATTAAAATAAATA
1 ATTATTAAAATATA-A
*
46224 ATTA-TAAATTATAA
1 ATTATTAAAATATAA
46238 ATTATTAAAATATAA
1 ATTATTAAAATATAA
46253 AT
1 AT
46255 ATGTATGTTT
Statistics
Matches: 27, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
14 5 0.19
15 18 0.67
16 4 0.15
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (15 bp):
ATTATTAAAATATAA
Found at i:47400 original size:30 final size:30
Alignment explanation
Indices: 47364--47423 Score: 84
Period size: 30 Copynumber: 2.0 Consensus size: 30
47354 TATTTTTTAA
** * *
47364 TTTTATATTTATTGATTATATTAAAATATT
1 TTTTATATTTATCAAATATATAAAAATATT
47394 TTTTATATTTATCAAATATATAAAAATATT
1 TTTTATATTTATCAAATATATAAAAATATT
47424 AAATTTTACC
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.42, C:0.02, G:0.02, T:0.55
Consensus pattern (30 bp):
TTTTATATTTATCAAATATATAAAAATATT
Found at i:48067 original size:2 final size:2
Alignment explanation
Indices: 48060--48090 Score: 62
Period size: 2 Copynumber: 15.5 Consensus size: 2
48050 ATTGAATAGT
48060 GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA G
1 GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA G
48091 CATGCCTTGA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.48, C:0.00, G:0.52, T:0.00
Consensus pattern (2 bp):
GA
Found at i:50097 original size:25 final size:24
Alignment explanation
Indices: 50051--50098 Score: 60
Period size: 24 Copynumber: 2.0 Consensus size: 24
50041 TTTTAGTTCA
* *
50051 TATAAAAAACTTAATTAGATAGAG
1 TATAAAAAACTTAAATACATAGAG
*
50075 TATAAAAAATTTAAAATACATAGA
1 TATAAAAAACTT-AAATACATAGA
50099 AGTTAATTAT
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
24 11 0.55
25 9 0.45
ACGTcount: A:0.58, C:0.04, G:0.08, T:0.29
Consensus pattern (24 bp):
TATAAAAAACTTAAATACATAGAG
Found at i:52001 original size:2 final size:2
Alignment explanation
Indices: 51994--52019 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
51984 GTTGAATTTA
51994 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
52020 GGGCCATTGG
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:52669 original size:6 final size:6
Alignment explanation
Indices: 52660--52684 Score: 50
Period size: 6 Copynumber: 4.2 Consensus size: 6
52650 TATTTGCCCT
52660 TCTACC TCTACC TCTACC TCTACC T
1 TCTACC TCTACC TCTACC TCTACC T
52685 GGCTCAAGGC
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 19 1.00
ACGTcount: A:0.16, C:0.48, G:0.00, T:0.36
Consensus pattern (6 bp):
TCTACC
Found at i:53195 original size:10 final size:10
Alignment explanation
Indices: 53180--53204 Score: 50
Period size: 10 Copynumber: 2.5 Consensus size: 10
53170 TTCTTCCATG
53180 TTATGTTATA
1 TTATGTTATA
53190 TTATGTTATA
1 TTATGTTATA
53200 TTATG
1 TTATG
53205 GACAGTCTCA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 15 1.00
ACGTcount: A:0.28, C:0.00, G:0.12, T:0.60
Consensus pattern (10 bp):
TTATGTTATA
Found at i:55034 original size:360 final size:363
Alignment explanation
Indices: 54367--55069 Score: 1241
Period size: 360 Copynumber: 1.9 Consensus size: 363
54357 TCAAAGGTCG
*
54367 TTCTCAGAACTGGAAGAAGGGAAACATGGGGAGATCAAAATTGAAACCCAGACTGGAAAAAGATG
1 TTCTCAGAACTGGAAGAAGGGAAACATGGGCAGATCAAAATTGAAACCCAGACTGG--AAAGA-G
*
54432 AAGATGAATGCGCCTTTTGTCATAAGAAAGGCCACTAGAAAAAAGATTGTCCAAAGCTGAAGAAG
63 AAGATGAATGCACCTTTTGTCATAAGAAAGGCCACTAGAAAAAAGATTGTCCAAAGCTGAAGAAG
* * *
54497 AAAGGAAAAGCTGCTCCAAATGCATGTATTGCAGAGCGTGATGCTAGTGACTCTGACATATCACT
128 AAAGGAAAAACTGCTCCAAATGCATGTATTGCAAAGCATGATGCTAGTGACTCTGACATATCACT
* *
54562 GGTTGCTTCATCATCAGCATTCCATTTAGATGAGTGGATATTGAATTTGGGTTACACCTATCATA
193 GGTTGCTTCATCATCAGCAGTCCATTCAGATGAGTGGATATTGAATTTGGGTTACACCTATCATA
54627 TGTCCCCTAATCGGGAGTGGTTCTTCGATTTAGTAGAACTAAATGGAGGAGTTGTTTATATGGGT
258 TGTCCCCTAATCGGGAGTGGTTCTTCGATTTAGTAGAACTAAATGGAGGAGTTGTTTATATGGGT
54692 AATGACAACACCTGTAAACTGCTGTAAAACTGAGGAGTTGC
323 AATGACAACACCTGTAAACTGCTGTAAAACTGAGGAGTTGC
54733 TTCTCAGAACTGGAAGAAGGGAAACATGGGCAGATCAAAATTGAAACCCAGACTGG-AA-A-AAG
1 TTCTCAGAACTGGAAGAAGGGAAACATGGGCAGATCAAAATTGAAACCCAGACTGGAAAGAGAAG
* * *
54795 ATGAATGCACCTTTTGTCATGAGAAATGCCACTAGAAGAAAGATTGTCCAAAGCTGAAGAAGAAA
66 ATGAATGCACCTTTTGTCATAAGAAAGGCCACTAGAAAAAAGATTGTCCAAAGCTGAAGAAGAAA
54860 GGAAAAACTGCTCCAAATGCATGTATTGCAAAGCATGATGCTAGTGACTCTGACATATCACTGGT
131 GGAAAAACTGCTCCAAATGCATGTATTGCAAAGCATGATGCTAGTGACTCTGACATATCACTGGT
* *
54925 TGCTTCATCATCAGCAGTCCATTCAGATGAGTGGATATTGGATTTGGGTTGCACCTATCATATGT
196 TGCTTCATCATCAGCAGTCCATTCAGATGAGTGGATATTGAATTTGGGTTACACCTATCATATGT
54990 CCCCTAATCGGGAGTGGTTCTTCGATTTAGTAGAACTAAATGGAGGAGTTGTTTATATGGGTAAT
261 CCCCTAATCGGGAGTGGTTCTTCGATTTAGTAGAACTAAATGGAGGAGTTGTTTATATGGGTAAT
*
55055 GACGACACCTGTAAA
326 GACAACACCTGTAAA
55070 ATTGTTGGGA
Statistics
Matches: 324, Mismatches: 13, Indels: 6
0.94 0.04 0.02
Matches are distributed among these distances:
360 266 0.82
362 1 0.00
363 2 0.01
366 55 0.17
ACGTcount: A:0.34, C:0.17, G:0.24, T:0.26
Consensus pattern (363 bp):
TTCTCAGAACTGGAAGAAGGGAAACATGGGCAGATCAAAATTGAAACCCAGACTGGAAAGAGAAG
ATGAATGCACCTTTTGTCATAAGAAAGGCCACTAGAAAAAAGATTGTCCAAAGCTGAAGAAGAAA
GGAAAAACTGCTCCAAATGCATGTATTGCAAAGCATGATGCTAGTGACTCTGACATATCACTGGT
TGCTTCATCATCAGCAGTCCATTCAGATGAGTGGATATTGAATTTGGGTTACACCTATCATATGT
CCCCTAATCGGGAGTGGTTCTTCGATTTAGTAGAACTAAATGGAGGAGTTGTTTATATGGGTAAT
GACAACACCTGTAAACTGCTGTAAAACTGAGGAGTTGC
Found at i:58474 original size:2 final size:2
Alignment explanation
Indices: 58467--58518 Score: 95
Period size: 2 Copynumber: 26.0 Consensus size: 2
58457 CGCCACTCAA
*
58467 AT AT AT AT AT AT AT AT GT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
58509 AT AT AT AT AT
1 AT AT AT AT AT
58519 TATGCTTTCC
Statistics
Matches: 48, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
2 48 1.00
ACGTcount: A:0.48, C:0.00, G:0.02, T:0.50
Consensus pattern (2 bp):
AT
Found at i:58742 original size:2 final size:2
Alignment explanation
Indices: 58735--58773 Score: 78
Period size: 2 Copynumber: 19.5 Consensus size: 2
58725 AAAGCTAATC
58735 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
58774 CAGGTCCATC
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 37 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:58868 original size:2 final size:2
Alignment explanation
Indices: 58863--58907 Score: 90
Period size: 2 Copynumber: 22.5 Consensus size: 2
58853 ATTGTGTGTG
58863 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
58905 TA T
1 TA T
58908 GCAGCGTAGC
Statistics
Matches: 43, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 43 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:59349 original size:2 final size:2
Alignment explanation
Indices: 59342--59373 Score: 64
Period size: 2 Copynumber: 16.0 Consensus size: 2
59332 CTAAACATTG
59342 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
59374 GATCATGATG
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:59762 original size:2 final size:2
Alignment explanation
Indices: 59755--59799 Score: 83
Period size: 2 Copynumber: 23.0 Consensus size: 2
59745 AAGTCTATTG
59755 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT -T
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
59796 AT AT
1 AT AT
59800 CCTTTCGTTT
Statistics
Matches: 42, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
1 1 0.02
2 41 0.98
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
AT
Found at i:59897 original size:18 final size:17
Alignment explanation
Indices: 59866--59900 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
59856 ATAATTTTTT
59866 AAATATAAAAATATTTA
1 AAATATAAAAATATTTA
*
59883 AAATATTAAATATATTTA
1 AAATA-TAAAAATATTTA
59901 TATTAAATAC
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (17 bp):
AAATATAAAAATATTTA
Found at i:69069 original size:2 final size:2
Alignment explanation
Indices: 69062--69097 Score: 72
Period size: 2 Copynumber: 18.0 Consensus size: 2
69052 TGCTGTAACC
69062 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
69098 TGGTACATTA
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 34 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:70181 original size:14 final size:13
Alignment explanation
Indices: 70171--70221 Score: 52
Period size: 14 Copynumber: 3.9 Consensus size: 13
70161 TATTAATATA
70171 TAAAAATT--AAT
1 TAAAAATTAAAAT
*
70182 TAAATATTAAAAT
1 TAAAAATTAAAAT
*
70195 ATTAAAATTAAAAT
1 -TAAAAATTAAAAT
70209 TAAAATATTAAAA
1 TAAAA-ATTAAAA
70222 ATAATTATAA
Statistics
Matches: 32, Mismatches: 4, Indels: 5
0.78 0.10 0.12
Matches are distributed among these distances:
11 7 0.22
13 7 0.22
14 18 0.56
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (13 bp):
TAAAAATTAAAAT
Found at i:70190 original size:25 final size:27
Alignment explanation
Indices: 70161--70225 Score: 82
Period size: 25 Copynumber: 2.5 Consensus size: 27
70151 GTATGCTTGT
*
70161 TATTAATATATAAAAATT-AATT-AAA
1 TATTAAAATATAAAAATTAAATTAAAA
*
70186 TATTAAAATATTAAAATTAAAATTAAAA
1 TATTAAAATATAAAAATT-AAATTAAAA
70214 TATTAAAA-ATAA
1 TATTAAAATATAA
70226 TTATAATATA
Statistics
Matches: 34, Mismatches: 3, Indels: 4
0.83 0.07 0.10
Matches are distributed among these distances:
25 16 0.47
27 7 0.21
28 11 0.32
ACGTcount: A:0.63, C:0.00, G:0.00, T:0.37
Consensus pattern (27 bp):
TATTAAAATATAAAAATTAAATTAAAA
Found at i:70196 original size:8 final size:8
Alignment explanation
Indices: 70161--70221 Score: 51
Period size: 8 Copynumber: 8.0 Consensus size: 8
70151 GTATGCTTGT
*
70161 TATTAATA
1 TATTAAAA
*
70169 TATAAAAA
1 TATTAAAA
70177 TTAATT-AAA
1 -T-ATTAAAA
70186 TATTAAAA
1 TATTAAAA
70194 TATT-AAA
1 TATTAAAA
70201 -ATT-AAA
1 TATTAAAA
70207 -ATTAAAA
1 TATTAAAA
70214 TATTAAAA
1 TATTAAAA
70222 ATAATTATAA
Statistics
Matches: 45, Mismatches: 3, Indels: 10
0.78 0.05 0.17
Matches are distributed among these distances:
6 9 0.20
7 9 0.20
8 21 0.47
9 4 0.09
10 2 0.04
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (8 bp):
TATTAAAA
Found at i:70212 original size:20 final size:21
Alignment explanation
Indices: 70179--70221 Score: 79
Period size: 20 Copynumber: 2.1 Consensus size: 21
70169 TATAAAAATT
70179 AATTAAATATTAAAATATTAA
1 AATTAAATATTAAAATATTAA
70200 AATTAAA-ATTAAAATATTAA
1 AATTAAATATTAAAATATTAA
70220 AA
1 AA
70222 ATAATTATAA
Statistics
Matches: 22, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
20 15 0.68
21 7 0.32
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (21 bp):
AATTAAATATTAAAATATTAA
Found at i:70303 original size:19 final size:17
Alignment explanation
Indices: 70261--70317 Score: 60
Period size: 18 Copynumber: 3.1 Consensus size: 17
70251 GATATTACTG
70261 ATATTATTTTTGAATATA
1 ATATTATTTTT-AATATA
*
70279 ATATTATTTTTATTATA
1 ATATTATTTTTAATATA
*
70296 ATAAATTATATTTTAAAATA
1 AT--ATTAT-TTTTAATATA
70316 AT
1 AT
70318 GTTAAAAAAT
Statistics
Matches: 33, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
17 7 0.21
18 11 0.33
19 5 0.15
20 10 0.30
ACGTcount: A:0.44, C:0.00, G:0.02, T:0.54
Consensus pattern (17 bp):
ATATTATTTTTAATATA
Found at i:72568 original size:2 final size:2
Alignment explanation
Indices: 72561--72588 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
72551 CAACAATACG
72561 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
72589 TGATATTAAA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:79570 original size:132 final size:130
Alignment explanation
Indices: 79359--79629 Score: 443
Period size: 132 Copynumber: 2.1 Consensus size: 130
79349 GGAAAAAATG
* * *
79359 AGAGTCATCCAATTGTTTTCATTGCTGGTGATTAGTTGGAAGATGCATCTTCGTAGCTTTGTGCT
1 AGAGTCATCCAATTGTTTTCATTGCTGGCGATTAGTTGGAAGATGCATCTTCATAGCTTGGTGCT
*
79424 TTTATACGTTCCAACAAGATTTTTCTTCTACTCAAAATCTCGATATTGCTTGTCATTTTAGACAA
66 TTTATACATTCCAACAAGATTTTTCTTCTACTCAAAATCTCGATATTGCTTGTCATTTTAGACAA
* *
79489 AGAGTCATCCAATTGTTTTCCATTGTTGGCGGTTAGTTGGAAGATGCATCTTTCATAGCTTGGTG
1 AGAGTCATCCAATTGTTTT-CATTGCTGGCGATTAGTTGGAAGATGCATC-TTCATAGCTTGGTG
* *
79554 CTTTTATACATTCCAACAAGATTTTTCTTCTACTCAAAATCTCTATATTGCTTGTCATTTTAGAT
64 CTTTTATACATTCCAACAAGATTTTTCTTCTACTCAAAATCTCGATATTGCTTGTCATTTTAGAC
79619 AA
129 AA
*
79621 AAAGTCATC
1 AGAGTCATC
79630 TCTACTGTTT
Statistics
Matches: 130, Mismatches: 9, Indels: 2
0.92 0.06 0.01
Matches are distributed among these distances:
130 19 0.15
131 27 0.21
132 84 0.65
ACGTcount: A:0.25, C:0.18, G:0.16, T:0.41
Consensus pattern (130 bp):
AGAGTCATCCAATTGTTTTCATTGCTGGCGATTAGTTGGAAGATGCATCTTCATAGCTTGGTGCT
TTTATACATTCCAACAAGATTTTTCTTCTACTCAAAATCTCGATATTGCTTGTCATTTTAGACAA
Found at i:85133 original size:2 final size:2
Alignment explanation
Indices: 85128--85168 Score: 82
Period size: 2 Copynumber: 20.5 Consensus size: 2
85118 AAACCAGTCC
85128 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
85169 GTACGTCGTG
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 39 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:85915 original size:5 final size:5
Alignment explanation
Indices: 85897--85932 Score: 54
Period size: 5 Copynumber: 7.2 Consensus size: 5
85887 CTTCGGGAAT
* *
85897 TTATA ATATA TTATT TTATA TTATA TTATA TTATA T
1 TTATA TTATA TTATA TTATA TTATA TTATA TTATA T
85933 GAATATAAAT
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
5 27 1.00
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (5 bp):
TTATA
Found at i:86495 original size:2 final size:2
Alignment explanation
Indices: 86488--86522 Score: 70
Period size: 2 Copynumber: 17.5 Consensus size: 2
86478 CGTCAAAATC
86488 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
86523 CATTCATGAA
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 33 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:86829 original size:3 final size:3
Alignment explanation
Indices: 86821--86882 Score: 58
Period size: 3 Copynumber: 21.0 Consensus size: 3
86811 TTTTTATTTA
* *
86821 TAT TAT TAT TGT TA- AAT TTAT -AT TAT TAT TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT -TAT TAT TAT TAT TAT TAT TAT TAT TAT
*
86865 TAT TA- AATT TAT TAT TAT
1 TAT TAT TA-T TAT TAT TAT
86883 GTTTTTTAAA
Statistics
Matches: 48, Mismatches: 6, Indels: 10
0.75 0.09 0.16
Matches are distributed among these distances:
2 4 0.08
3 41 0.85
4 3 0.06
ACGTcount: A:0.35, C:0.00, G:0.02, T:0.63
Consensus pattern (3 bp):
TAT
Found at i:86892 original size:21 final size:21
Alignment explanation
Indices: 86816--86882 Score: 69
Period size: 18 Copynumber: 3.6 Consensus size: 21
86806 ATTAATTTTT
*
86816 ATTTA-TATTATTATTGTTAA
1 ATTTATTATTATTATTATTAA
86836 A--T-TTA-TATTATTATT--
1 ATTTATTATTATTATTATTAA
86851 A-TTATTATTATTATTATTAA
1 ATTTATTATTATTATTATTAA
86871 ATTTATTATTAT
1 ATTTATTATTAT
86883 GTTTTTTAAA
Statistics
Matches: 39, Mismatches: 1, Indels: 13
0.74 0.02 0.25
Matches are distributed among these distances:
15 1 0.03
16 1 0.03
17 12 0.31
18 13 0.33
20 2 0.05
21 10 0.26
ACGTcount: A:0.36, C:0.00, G:0.01, T:0.63
Consensus pattern (21 bp):
ATTTATTATTATTATTATTAA
Found at i:88915 original size:5 final size:5
Alignment explanation
Indices: 88905--88936 Score: 64
Period size: 5 Copynumber: 6.4 Consensus size: 5
88895 ACCACACGTA
88905 TCCCT TCCCT TCCCT TCCCT TCCCT TCCCT TC
1 TCCCT TCCCT TCCCT TCCCT TCCCT TCCCT TC
88937 TAAAATTCCT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 27 1.00
ACGTcount: A:0.00, C:0.59, G:0.00, T:0.41
Consensus pattern (5 bp):
TCCCT
Found at i:90682 original size:2 final size:2
Alignment explanation
Indices: 90675--90732 Score: 55
Period size: 2 Copynumber: 29.0 Consensus size: 2
90665 GGCTTCTTTA
* * * *
90675 AT AT AT AT AT AT AT AT AT AT GT AT AT AT GT AT GT GT GA- AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT -AT AT AT
*
90717 AT AT AT AT AG AT AT AT
1 AT AT AT AT AT AT AT AT
90733 GTGATACTTC
Statistics
Matches: 46, Mismatches: 8, Indels: 4
0.79 0.14 0.07
Matches are distributed among these distances:
1 1 0.02
2 45 0.98
ACGTcount: A:0.43, C:0.00, G:0.10, T:0.47
Consensus pattern (2 bp):
AT
Found at i:90834 original size:1 final size:1
Alignment explanation
Indices: 90824--90900 Score: 136
Period size: 1 Copynumber: 77.0 Consensus size: 1
90814 AAGATATTTG
*
90824 CCCCCTCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
1 CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
*
90889 CCCCCCACCCCC
1 CCCCCCCCCCCC
90901 GGCCCCAAAA
Statistics
Matches: 72, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
1 72 1.00
ACGTcount: A:0.01, C:0.97, G:0.00, T:0.01
Consensus pattern (1 bp):
C
Found at i:92549 original size:2 final size:2
Alignment explanation
Indices: 92542--92586 Score: 90
Period size: 2 Copynumber: 22.5 Consensus size: 2
92532 CACGCGCACT
92542 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
92584 TA T
1 TA T
92587 TAATAAAAGA
Statistics
Matches: 43, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 43 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:92922 original size:27 final size:28
Alignment explanation
Indices: 92859--92944 Score: 81
Period size: 27 Copynumber: 3.1 Consensus size: 28
92849 TATTTAATCT
* * *
92859 AATAATTTATTTATTAATATATTAATTATA
1 AATAAATTATATA-TAATATA-TAAATATA
92889 TAA-AAATTATATA-AATATATAAATATA
1 -AATAAATTATATATAATATATAAATATA
*
92916 AATAAATTTTATATAA-ATATAAATA-A
1 AATAAATTATATATAATATATAAATATA
92942 AAT
1 AAT
92945 TTATATATAT
Statistics
Matches: 49, Mismatches: 4, Indels: 9
0.79 0.06 0.15
Matches are distributed among these distances:
26 6 0.12
27 25 0.51
28 8 0.16
30 8 0.16
31 2 0.04
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (28 bp):
AATAAATTATATATAATATATAAATATA
Found at i:92928 original size:21 final size:21
Alignment explanation
Indices: 92904--92951 Score: 87
Period size: 21 Copynumber: 2.3 Consensus size: 21
92894 ATTATATAAA
*
92904 TATATAAATATAAATAAATTT
1 TATATAAATATAAATAAAATT
92925 TATATAAATATAAATAAAATT
1 TATATAAATATAAATAAAATT
92946 TATATA
1 TATATA
92952 TATAACTAAA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
21 26 1.00
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (21 bp):
TATATAAATATAAATAAAATT
Found at i:93721 original size:2 final size:2
Alignment explanation
Indices: 93714--93740 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
93704 TTAATAATAT
93714 GA GA GA GA GA GA GA GA GA GA GA GA GA G
1 GA GA GA GA GA GA GA GA GA GA GA GA GA G
93741 GTTCTCTCTG
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.48, C:0.00, G:0.52, T:0.00
Consensus pattern (2 bp):
GA
Found at i:93952 original size:66 final size:67
Alignment explanation
Indices: 93842--93971 Score: 217
Period size: 66 Copynumber: 2.0 Consensus size: 67
93832 GATGCGAGGG
* *
93842 AAGTCTGAAGTTTTAATCTCCCCTGTACTGTATTTATTTATAGCTGTTCAAGTGGGAAAACACTG
1 AAGTCTGAAGTTTTAATCTACCCTGTACTGTATTTATTTATAGCTCTTCAAGTGGGAAAACACTG
93907 TT
66 TT
* *
93909 AAGTCTG-AGTTTTATTCTACCCTGTACTGTATTTATTTTTAGCTCTTCAAGTGGGAAAACACT
1 AAGTCTGAAGTTTTAATCTACCCTGTACTGTATTTATTTATAGCTCTTCAAGTGGGAAAACACT
93972 CACTCCCTCC
Statistics
Matches: 59, Mismatches: 4, Indels: 1
0.92 0.06 0.02
Matches are distributed among these distances:
66 52 0.88
67 7 0.12
ACGTcount: A:0.26, C:0.17, G:0.17, T:0.40
Consensus pattern (67 bp):
AAGTCTGAAGTTTTAATCTACCCTGTACTGTATTTATTTATAGCTCTTCAAGTGGGAAAACACTG
TT
Found at i:96955 original size:15 final size:15
Alignment explanation
Indices: 96920--96959 Score: 53
Period size: 15 Copynumber: 2.7 Consensus size: 15
96910 CATACTTTTT
* *
96920 TATATTAAATGATTA
1 TATATTTAATGATAA
96935 TATATTTAATGATAA
1 TATATTTAATGATAA
*
96950 TTTATTTAAT
1 TATATTTAAT
96960 TACTTATTAA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
15 22 1.00
ACGTcount: A:0.42, C:0.00, G:0.05, T:0.53
Consensus pattern (15 bp):
TATATTTAATGATAA
Found at i:97039 original size:17 final size:18
Alignment explanation
Indices: 97007--97047 Score: 57
Period size: 17 Copynumber: 2.3 Consensus size: 18
96997 TATGTTTGTT
*
97007 TTTATTTATTTATAATTA
1 TTTATTTATATATAATTA
97025 TTTATTT-TATATAATTA
1 TTTATTTATATATAATTA
*
97042 ATTATT
1 TTTATT
97048 ATTAAATTAA
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
17 14 0.67
18 7 0.33
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (18 bp):
TTTATTTATATATAATTA
Found at i:107946 original size:3 final size:3
Alignment explanation
Indices: 107940--107965 Score: 52
Period size: 3 Copynumber: 8.7 Consensus size: 3
107930 TAATAATAAC
107940 TAT TAT TAT TAT TAT TAT TAT TAT TA
1 TAT TAT TAT TAT TAT TAT TAT TAT TA
107966 ATGTATTGCT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 23 1.00
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (3 bp):
TAT
Found at i:108161 original size:2 final size:2
Alignment explanation
Indices: 108154--108184 Score: 62
Period size: 2 Copynumber: 15.5 Consensus size: 2
108144 AGCATGTATG
108154 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
108185 TCATTTTCCT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:108420 original size:2 final size:2
Alignment explanation
Indices: 108413--108447 Score: 70
Period size: 2 Copynumber: 17.5 Consensus size: 2
108403 GCATAAGGGT
108413 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
108448 TGCGTTGTTC
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 33 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:111316 original size:2 final size:2
Alignment explanation
Indices: 111311--111368 Score: 64
Period size: 2 Copynumber: 29.0 Consensus size: 2
111301 TAGAAAAAAA
** * *
111311 AT AT AT AT AT AT AT AT AT AT -T AGT GG AT AT AG AT AA AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT A-T AT AT AT AT AT AT AT AT AT
111353 AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT
111369 GGAAGAGTTT
Statistics
Matches: 46, Mismatches: 8, Indels: 4
0.79 0.14 0.07
Matches are distributed among these distances:
1 1 0.02
2 44 0.96
3 1 0.02
ACGTcount: A:0.48, C:0.00, G:0.07, T:0.45
Consensus pattern (2 bp):
AT
Found at i:113939 original size:2 final size:2
Alignment explanation
Indices: 113932--113990 Score: 118
Period size: 2 Copynumber: 29.5 Consensus size: 2
113922 AACAACTATC
113932 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT
1 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT
113974 CT CT CT CT CT CT CT CT C
1 CT CT CT CT CT CT CT CT C
113991 CACTTTTGTT
Statistics
Matches: 57, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 57 1.00
ACGTcount: A:0.00, C:0.51, G:0.00, T:0.49
Consensus pattern (2 bp):
CT
Found at i:119793 original size:8 final size:7
Alignment explanation
Indices: 119783--119821 Score: 69
Period size: 7 Copynumber: 5.4 Consensus size: 7
119773 TTTAGTTTTT
119783 TTTTTAA
1 TTTTTAA
119790 TTTTTAA
1 TTTTTAA
119797 TTTTTAA
1 TTTTTAA
119804 TTTTTAA
1 TTTTTAA
119811 TTTTTTAA
1 -TTTTTAA
119819 TTT
1 TTT
119822 CTACATGTTG
Statistics
Matches: 31, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
7 24 0.77
8 7 0.23
ACGTcount: A:0.26, C:0.00, G:0.00, T:0.74
Consensus pattern (7 bp):
TTTTTAA
Found at i:120928 original size:2 final size:2
Alignment explanation
Indices: 120921--120965 Score: 81
Period size: 2 Copynumber: 22.5 Consensus size: 2
120911 TTTGACTAGT
*
120921 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TG TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
120963 TA T
1 TA T
120966 TATTGAAACT
Statistics
Matches: 41, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
2 41 1.00
ACGTcount: A:0.47, C:0.00, G:0.02, T:0.51
Consensus pattern (2 bp):
TA
Found at i:121612 original size:2 final size:2
Alignment explanation
Indices: 121605--121648 Score: 88
Period size: 2 Copynumber: 22.0 Consensus size: 2
121595 TTGTTTTGCA
121605 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
121647 AT
1 AT
121649 TTGTAGCGTG
Statistics
Matches: 42, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 42 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:122670 original size:19 final size:19
Alignment explanation
Indices: 122648--122730 Score: 61
Period size: 19 Copynumber: 4.6 Consensus size: 19
122638 CACAGATTAA
122648 AAATATTATATATTTATAT
1 AAATATTATATATTTATAT
*
122667 AAATATAATATA-TTA-AT
1 AAATATTATATATTTATAT
*
122684 -AAT-TTATAT-TATATAT
1 AAATATTATATATTTATAT
* *
122700 AATTA-AATATATTTATGTAT
1 AAATATTATATATTTA--TAT
*
122720 TAATATTATAT
1 AAATATTATAT
122731 TTATATTATT
Statistics
Matches: 47, Mismatches: 9, Indels: 14
0.67 0.13 0.20
Matches are distributed among these distances:
15 7 0.15
16 5 0.11
17 8 0.17
18 6 0.13
19 11 0.23
20 6 0.13
21 4 0.09
ACGTcount: A:0.48, C:0.00, G:0.01, T:0.51
Consensus pattern (19 bp):
AAATATTATATATTTATAT
Found at i:122701 original size:33 final size:33
Alignment explanation
Indices: 122656--122730 Score: 91
Period size: 33 Copynumber: 2.3 Consensus size: 33
122646 AAAAATATTA
122656 TATATT-TATATAAATATAATATATTAAT-AATT
1 TATATTATATATAAATA-AATATATTAATGAATT
* * *
122688 TATATTATATATAATTAAATATATTTATGTATT
1 TATATTATATATAAATAAATATATTAATGAATT
*
122721 AATATTATAT
1 TATATTATAT
122731 TTATATTATT
Statistics
Matches: 37, Mismatches: 4, Indels: 3
0.84 0.09 0.07
Matches are distributed among these distances:
32 16 0.43
33 21 0.57
ACGTcount: A:0.47, C:0.00, G:0.01, T:0.52
Consensus pattern (33 bp):
TATATTATATATAAATAAATATATTAATGAATT
Found at i:122707 original size:37 final size:39
Alignment explanation
Indices: 122650--122736 Score: 101
Period size: 37 Copynumber: 2.3 Consensus size: 39
122640 CAGATTAAAA
*
122650 ATATTATATATTTATATAAATATAATATAT-TAATAAT-TT
1 ATATTATATA-TAATATAAATAT-ATATATGTAATAATATT
* *
122689 ATATTATATATAAT-TAAATATATTTATGTATTAATATT
1 ATATTATATATAATATAAATATATATATGTAATAATATT
122727 ATATT-TATAT
1 ATATTATATAT
122737 TATTTTTTAT
Statistics
Matches: 43, Mismatches: 3, Indels: 6
0.83 0.06 0.12
Matches are distributed among these distances:
36 5 0.12
37 18 0.42
38 10 0.23
39 10 0.23
ACGTcount: A:0.46, C:0.00, G:0.01, T:0.53
Consensus pattern (39 bp):
ATATTATATATAATATAAATATATATATGTAATAATATT
Found at i:122731 original size:19 final size:19
Alignment explanation
Indices: 122674--122736 Score: 67
Period size: 19 Copynumber: 3.2 Consensus size: 19
122664 TATAAATATA
122674 ATATATTAATAATTTATATTAT
1 ATATATTAAT-A-TTATATT-T
122696 ATATAATTAA-A-TATATTT
1 ATAT-ATTAATATTATATTT
*
122714 ATGTATTAATATTATATTT
1 ATATATTAATATTATATTT
122733 ATAT
1 ATAT
122737 TATTTTTTAT
Statistics
Matches: 36, Mismatches: 2, Indels: 9
0.77 0.04 0.19
Matches are distributed among these distances:
17 5 0.14
18 5 0.14
19 16 0.44
21 1 0.03
22 4 0.11
23 5 0.14
ACGTcount: A:0.44, C:0.00, G:0.02, T:0.54
Consensus pattern (19 bp):
ATATATTAATATTATATTT
Found at i:126935 original size:2 final size:2
Alignment explanation
Indices: 126930--126956 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
126920 TCGGTGTGTG
126930 TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA T
126957 TAAAGAGATT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:127426 original size:118 final size:109
Alignment explanation
Indices: 127307--127511 Score: 256
Period size: 109 Copynumber: 1.9 Consensus size: 109
127297 TTAAAATTAA
* *
127307 AAAATT-AAATTAAAAAGGGTTTATTATTATTATTATTTAATAAAATTAAAAATAATATTTAATT
1 AAAATTAAAAATAAAAAGGATTT-TT-TTATTATTATTTAATAAAATTAAAAATAATATTTAATT
*
127371 AAATTTAAAAAAATTACATTAACAAATTAAAATATAAATTATATGTTT
64 AAATTTAAAAAATTTACATTAACAAATTAAAATATAAATTAT-T-TTT
** * * * *
127419 -TTA-TAAAAATAAAAAGTATTTTTTTATTATTTTTTAATAAAA-TAAAAATGATAATTAATTAA
1 AAAATTAAAAATAAAAAGGATTTTTTTATTATTATTTAATAAAATTAAAAATAATATTTAATT-A
127481 AATTTAAAAAATTTACATTAACAAATTAAAA
65 AATTTAAAAAATTTACATTAACAAATTAAAA
127512 AAATAACATT
Statistics
Matches: 82, Mismatches: 9, Indels: 7
0.84 0.09 0.07
Matches are distributed among these distances:
108 16 0.20
109 49 0.60
110 3 0.04
111 14 0.17
ACGTcount: A:0.54, C:0.02, G:0.03, T:0.41
Consensus pattern (109 bp):
AAAATTAAAAATAAAAAGGATTTTTTTATTATTATTTAATAAAATTAAAAATAATATTTAATTAA
ATTTAAAAAATTTACATTAACAAATTAAAATATAAATTATTTTT
Found at i:127524 original size:23 final size:22
Alignment explanation
Indices: 127476--127538 Score: 65
Period size: 23 Copynumber: 2.9 Consensus size: 22
127466 ATGATAATTA
* * *
127476 ATTAA-AATTTAAAAAATTTAC
1 ATTAACAAATTAAAAAAATAAC
127497 ATTAACAAATTAAAAAAATAAC
1 ATTAACAAATTAAAAAAATAAC
**
127519 ATTTAAGGAATTAAAAAAAT
1 A-TTAACAAATTAAAAAAAT
127539 TATCATTATT
Statistics
Matches: 35, Mismatches: 5, Indels: 2
0.83 0.12 0.05
Matches are distributed among these distances:
21 5 0.14
22 14 0.40
23 16 0.46
ACGTcount: A:0.62, C:0.05, G:0.03, T:0.30
Consensus pattern (22 bp):
ATTAACAAATTAAAAAAATAAC
Found at i:127536 original size:109 final size:109
Alignment explanation
Indices: 127333--127538 Score: 281
Period size: 109 Copynumber: 1.9 Consensus size: 109
127323 GGGTTTATTA
*
127333 TTATTATTATTTAATAAAATTAAAAATAATATTTAATTAAATTTAAAAAAATTACATTAACAAAT
1 TTATTATTATTTAATAAAATTAAAAATAATAATTAATTAAATTTAAAAAAATTACATTAACAAAT
* * ***
127398 TAAAATATAAATTATATGTTTTTATAAAAATAAAAAGTATTTTT
66 TAAAAAATAAATTATAAGGAATTATAAAAATAAAAAGTATTTTT
* * *
127442 TTATTATTTTTTAATAAAA-TAAAAATGATAATTAATTAAAATTTAAAAAATTTACATTAACAAA
1 TTATTATTATTTAATAAAATTAAAAATAATAATTAATT-AAATTTAAAAAAATTACATTAACAAA
*
127506 TTAAAAAAATAACATT-TAAGGAATTAAAAAAAT
65 TT-AAAAAATAA-ATTATAAGGAATTATAAAAAT
127539 TATCATTATT
Statistics
Matches: 84, Mismatches: 10, Indels: 5
0.85 0.10 0.05
Matches are distributed among these distances:
108 16 0.19
109 45 0.54
110 20 0.24
111 3 0.04
ACGTcount: A:0.55, C:0.02, G:0.02, T:0.40
Consensus pattern (109 bp):
TTATTATTATTTAATAAAATTAAAAATAATAATTAATTAAATTTAAAAAAATTACATTAACAAAT
TAAAAAATAAATTATAAGGAATTATAAAAATAAAAAGTATTTTT
Found at i:128047 original size:123 final size:125
Alignment explanation
Indices: 127849--128191 Score: 445
Period size: 123 Copynumber: 2.8 Consensus size: 125
127839 GTAAAAAAAA
* * *
127849 TTTTAATTTAAAATTTTTTA-TTTT-TAAAAACATAATAATTAATATTTTAATTTG-TAATGTAA
1 TTTTATTTTAAAATTTTTTATTTTTATAAAAACATAATAATTAATATTTTAATTTGTTAATATAT
* * *
127911 ATTTTTAAGCTTAATTAAATATTATTTTTTATTTTATTAAAAATTATAATAA-AAAACCT
66 TTTTTTAAACTTAATTAAATATTATTTTTTATTTTATTAAAAATAATAATAATAAAACCT
*
127970 TTTTATTTTAAAATTTTTTATTTTTATAAAAACATAATAATTAA-ATGTTAATTTGTTAATATAT
1 TTTTATTTTAAAATTTTTTATTTTTATAAAAACATAATAATTAATATTTTAATTTGTTAATATAT
* *
128034 TTTTTTAAACTTAATTAAATATTATTTTTAATTTTATTAAAAATAATAATAATAAACCCT
66 TTTTTTAAACTTAATTAAATATTATTTTTTATTTTATTAAAAATAATAATAATAAAACCT
* * *
128094 TTTTATTTT--TATTTAAATT-TTTTTATAATTAA-A-AATAATTAATATTTTAATTTGTTAATA
1 TTTTATTTTAAAATTT--TTTATTTTTATAA-AAACATAATAATTAATATTTTAATTTGTTAATA
* *
128154 TAAATTTCTTTAAAGTTAATTAAATATTATTTTTTATT
63 T--ATTTTTTTAAACTTAATTAAATATTATTTTTTATT
128192 AAAAATAATA
Statistics
Matches: 196, Mismatches: 16, Indels: 16
0.86 0.07 0.07
Matches are distributed among these distances:
121 19 0.10
122 27 0.14
123 99 0.51
124 19 0.10
125 32 0.16
ACGTcount: A:0.41, C:0.03, G:0.02, T:0.54
Consensus pattern (125 bp):
TTTTATTTTAAAATTTTTTATTTTTATAAAAACATAATAATTAATATTTTAATTTGTTAATATAT
TTTTTTAAACTTAATTAAATATTATTTTTTATTTTATTAAAAATAATAATAATAAAACCT
Found at i:128072 original size:22 final size:20
Alignment explanation
Indices: 128017--128074 Score: 53
Period size: 22 Copynumber: 2.6 Consensus size: 20
128007 TAATTAAATG
*
128017 TTAATTTGTTAATATATTTTT
1 TTAATTTATTAA-ATATTTTT
*
128038 TTAAACTTAATTAAATATTATTT
1 TT-AA-TTTATTAAATATT-TTT
128061 TTAATTTTATTAAA
1 TTAA-TTTATTAAA
128075 AATAATAATA
Statistics
Matches: 30, Mismatches: 4, Indels: 5
0.77 0.10 0.13
Matches are distributed among these distances:
21 2 0.07
22 17 0.57
23 11 0.37
ACGTcount: A:0.38, C:0.02, G:0.02, T:0.59
Consensus pattern (20 bp):
TTAATTTATTAAATATTTTT
Found at i:128222 original size:125 final size:118
Alignment explanation
Indices: 127882--128237 Score: 280
Period size: 123 Copynumber: 2.9 Consensus size: 118
127872 TTAAAAACAT
* * * *
127882 AATAATTAATATTTTAATTTG-TAATGTAAATT-TTTAAGCTTAATTAAATATTATTTTTTATTT
1 AATAATTAA-ATGTTAATTTGTTAATAT-ATTTCTTTAAACTTAATTAAATATTA---TTTATTT
* * * *
127945 TATTAAAAATTATAATAAAAAAC-CTTTTT--A-TTTTAAAATTTTTTATTTTTATAA-AAACA
61 TATTAAAAATAATAATAATAAACACTTTTTAAATTTTTTAAA----TT-TTTTTATAATTAA-A
*
128004 TAATAATTAAATGTTAATTTGTTAATATATTTTTTTAAACTTAATTAAATATTATTTTTAATTTT
1 -AATAATTAAATGTTAATTTGTTAATATATTTCTTTAAACTTAATTAAATATTA--TTT-ATTTT
* **
128069 ATTAAAAATAATAATAATAAACCCTTTTTATTTTTATTTAAATTTTTTTATAATTAAA
62 ATTAAAAATAATAATAATAAACACTTTTTAAATTT-TTTAAATTTTTTTATAATTAAA
* *
128127 AATAATTAATATTTTAATTTGTTAATATAAATTTCTTTAAAGTTAATTAAATATTA-TT-TTTTA
1 AATAATTAA-ATGTTAATTTGTTAATAT--ATTTCTTTAAACTTAATTAAATATTATTTATTTTA
* * *
128190 TTAAAAATAATACTTAATATATTATTATTTTTTAAATTTTTTAAATTT
63 TTAAAAATAATA-ATAATA-A--A-CACTTTTTAAATTTTTTAAATTT
128238 AATTAATTTA
Statistics
Matches: 198, Mismatches: 18, Indels: 33
0.80 0.07 0.13
Matches are distributed among these distances:
120 17 0.09
121 5 0.03
122 30 0.15
123 86 0.43
124 20 0.10
125 33 0.17
127 2 0.01
128 5 0.03
ACGTcount: A:0.42, C:0.03, G:0.02, T:0.53
Consensus pattern (118 bp):
AATAATTAAATGTTAATTTGTTAATATATTTCTTTAAACTTAATTAAATATTATTTATTTTATTA
AAAATAATAATAATAAACACTTTTTAAATTTTTTAAATTTTTTTATAATTAAA
Found at i:132076 original size:70 final size:70
Alignment explanation
Indices: 131989--132183 Score: 322
Period size: 70 Copynumber: 2.8 Consensus size: 70
131979 TTTTTTTACC
* * *
131989 AAAAGAAATCTGATTCTCATG-TACAATTCATGCATTAGTCTAATCCTTGCGGTCTTTTTTGTTT
1 AAAAG-AATCTGATTCTCA-GATATAATTCATGCATTAGTCTAATCCTTGCAGTCTTTCTT-TTT
132053 TC-TATAA
63 TCTTATAA
132060 AAAAGAATCTGATTCTCAGATATAATTCATGCATTAGTCTAATCCTTGCAGTCTTTCTTTTTTCT
1 AAAAGAATCTGATTCTCAGATATAATTCATGCATTAGTCTAATCCTTGCAGTCTTTCTTTTTTCT
132125 TATAA
66 TATAA
132130 AAAAGAATCTGATTCTCAGATATAATTCATGCATTAGTCTAATCCTTGCAGTCT
1 AAAAGAATCTGATTCTCAGATATAATTCATGCATTAGTCTAATCCTTGCAGTCT
132184 AACATTTAAA
Statistics
Matches: 119, Mismatches: 3, Indels: 5
0.94 0.02 0.04
Matches are distributed among these distances:
69 6 0.05
70 108 0.91
71 5 0.04
ACGTcount: A:0.30, C:0.17, G:0.12, T:0.41
Consensus pattern (70 bp):
AAAAGAATCTGATTCTCAGATATAATTCATGCATTAGTCTAATCCTTGCAGTCTTTCTTTTTTCT
TATAA
Found at i:132481 original size:179 final size:178
Alignment explanation
Indices: 132113--132554 Score: 672
Period size: 179 Copynumber: 2.5 Consensus size: 178
132103 CCTTGCAGTC
132113 TTTC-TTTTTTCTTATAAAAAAGAATCTGATTCTCAGATATAATTCATGCATTAGTCTAATCCTT
1 TTTCTTTTTTTC-TATAAAAAAGAATCTGATTCTCAGATATAATTCATGCATTAGTCTAATCCTT
* * * * * * *
132177 GCAGTCTAACATTTAAAATCAATCAGTCTTTTTTTTTATAAAAAAATTTGATTTTCAGATATAAT
65 GCAGTCTGACATTTACAATCAATCAGACTTTTTTTCTATAAAAAAATCTGATTCTCAAATATAAT
* **
132242 TCATGCATTAGTCTAATCTTTCCAATCTAACATTTACAATCAATCAGTT
130 TCATGCATTAGTCTAATCCTTCCAATCTAACATTTACAATCAATCAACT
* *
132291 TTTCTTTTTTTTCTATAAAAAAGAATTTGATTCTTAGATATAATTCATGCATTAGTCTAATCCTT
1 TTTC-TTTTTTTCTATAAAAAAGAATCTGATTCTCAGATATAATTCATGCATTAGTCTAATCCTT
*
132356 GCAGTCTGACATTTACAATCAGTCA-ACTTTTTTTCTATTAAAAAGAATCTGATTCTCAAATATA
65 GCAGTCTGACATTTACAATCAATCAGACTTTTTTTCTA-TAAAAA-AATCTGATTCTCAAATATA
* * *
132420 ATTCATGCATTAGTCTAATCCTTGCAGTCTAACATTTACAATCAGTCAACT
128 ATTCATGCATTAGTCTAATCCTTCCAATCTAACATTTACAATCAATCAACT
* *
132471 TTTCTTTTTTTCTATAAAAAAGAATCTGATTCTCAGATATAATTCATTCATTAGTCTAATCCTTA
1 TTTCTTTTTTTCTATAAAAAAGAATCTGATTCTCAGATATAATTCATGCATTAGTCTAATCCTTG
132536 CAGTCTGACATTTACAATC
66 CAGTCTGACATTTACAATC
132555 GATTATCAGA
Statistics
Matches: 240, Mismatches: 20, Indels: 7
0.90 0.07 0.03
Matches are distributed among these distances:
178 14 0.06
179 154 0.64
180 72 0.30
ACGTcount: A:0.33, C:0.17, G:0.08, T:0.42
Consensus pattern (178 bp):
TTTCTTTTTTTCTATAAAAAAGAATCTGATTCTCAGATATAATTCATGCATTAGTCTAATCCTTG
CAGTCTGACATTTACAATCAATCAGACTTTTTTTCTATAAAAAAATCTGATTCTCAAATATAATT
CATGCATTAGTCTAATCCTTCCAATCTAACATTTACAATCAATCAACT
Found at i:132534 original size:92 final size:90
Alignment explanation
Indices: 132113--132554 Score: 603
Period size: 87 Copynumber: 4.9 Consensus size: 90
132103 CCTTGCAGTC
132113 TTTC-TTTTTTCTTATAAAAAAGAATCTGATTCTCAGATATAATTCATGCATTAGTCTAATCCTT
1 TTTCTTTTTTTC-TATAAAAAAGAATCTGATTCTCAGATATAATTCATGCATTAGTCTAATCCTT
*
132177 GCAGTCTAACATTTAAAATCAATC-A
65 GCAGTCTAACATTTACAATCAATCAA
* * * * * *
132202 -GTCTTTTTTTTTAT-AAAAA-AATTTGATTTTCAGATATAATTCATGCATTAGTCTAATCTTTC
1 TTTCTTTTTTTCTATAAAAAAGAATCTGATTCTCAGATATAATTCATGCATTAGTCTAATCCTTG
* *
132264 CAATCTAACATTTACAATCAATCAGTT
66 CAGTCTAACATTTACAATCAATCA--A
* *
132291 TTTCTTTTTTTTCTATAAAAAAGAATTTGATTCTTAGATATAATTCATGCATTAGTCTAATCCTT
1 TTTC-TTTTTTTCTATAAAAAAGAATCTGATTCTCAGATATAATTCATGCATTAGTCTAATCCTT
* *
132356 GCAGTCTGACATTTACAATCAGTCAA
65 GCAGTCTAACATTTACAATCAATCAA
* *
132382 ---CTTTTTTTCTATTAAAAAGAATCTGATTCTCAAATATAATTCATGCATTAGTCTAATCCTTG
1 TTTCTTTTTTTCTATAAAAAAGAATCTGATTCTCAGATATAATTCATGCATTAGTCTAATCCTTG
*
132444 CAGTCTAACATTTACAATCAGTCAA
66 CAGTCTAACATTTACAATCAATCAA
*
132469 CTTTTCTTTTTTTCTATAAAAAAGAATCTGATTCTCAGATATAATTCATTCATTAGTCTAATCCT
1 --TTTCTTTTTTTCTATAAAAAAGAATCTGATTCTCAGATATAATTCATGCATTAGTCTAATCCT
* *
132534 TACAGTCTGACATTTACAATC
64 TGCAGTCTAACATTTACAATC
132555 GATTATCAGA
Statistics
Matches: 311, Mismatches: 29, Indels: 23
0.86 0.08 0.06
Matches are distributed among these distances:
86 60 0.19
87 86 0.28
88 6 0.02
89 6 0.02
90 2 0.01
91 10 0.03
92 81 0.26
93 60 0.19
ACGTcount: A:0.33, C:0.17, G:0.08, T:0.42
Consensus pattern (90 bp):
TTTCTTTTTTTCTATAAAAAAGAATCTGATTCTCAGATATAATTCATGCATTAGTCTAATCCTTG
CAGTCTAACATTTACAATCAATCAA
Found at i:132591 original size:57 final size:58
Alignment explanation
Indices: 132493--132607 Score: 187
Period size: 57 Copynumber: 2.0 Consensus size: 58
132483 TATAAAAAAG
* *
132493 AATCTGATTCTCAGATATAATTCATTCATTAGTCTAATCCTTACAGTCTGACATTTAC
1 AATCTGATTATCAGATATAATTCATGCATTAGTCTAATCCTTACAGTCTGACATTTAC
* *
132551 AATC-GATTATCAGATATAATTTATGCATTAGTTTAATCCTTACAGTCTGACATTTAC
1 AATCTGATTATCAGATATAATTCATGCATTAGTCTAATCCTTACAGTCTGACATTTAC
132608 GATCAATCAA
Statistics
Matches: 53, Mismatches: 4, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
57 49 0.92
58 4 0.08
ACGTcount: A:0.32, C:0.18, G:0.10, T:0.40
Consensus pattern (58 bp):
AATCTGATTATCAGATATAATTCATGCATTAGTCTAATCCTTACAGTCTGACATTTAC
Found at i:132701 original size:148 final size:150
Alignment explanation
Indices: 132401--132702 Score: 473
Period size: 149 Copynumber: 2.0 Consensus size: 150
132391 TATTAAAAAG
* * *
132401 AATCTGATTCTCAAATATAATTCATGCATTAGTCTAATCCTTGCAGTCTAACATTTACAATCAGT
1 AATCTGATTATCAAATATAATTCATGCATTAGTCTAATCCTTACAGTCTAACATTTACAATCAAT
*
132466 CAACTTTTCTTTTTTTCTATAAAAAAGAATCTGATTCTCAGATATAATTCATTCATTAGTCTAAT
66 CAACTTTTCTTTTTTTCTATAAAAAAGAATCTGATTCTCAGATATAATTCATGCATTAGTCTAAT
132531 CCTTACAGTCTGACATTTAC
131 CCTTACAGTCTGACATTTAC
* * * * *
132551 AATC-GATTATCAGATATAATTTATGCATTAGTTTAATCCTTACAGTCTGACATTTACGATCAAT
1 AATCTGATTATCAAATATAATTCATGCATTAGTCTAATCCTTACAGTCTAACATTTACAATCAAT
* * *
132615 CAATTTTTCTTTTTTTTTATAAAAAAGAAT-TGATTCTTAGATATAATTCATGCATTAGTCTAAT
66 CAACTTTTCTTTTTTTCTATAAAAAAGAATCTGATTCTCAGATATAATTCATGCATTAGTCTAAT
*
132679 CCTTGCAGTCTGACATTTAC
131 CCTTACAGTCTGACATTTAC
132699 AATC
1 AATC
132703 AATCAACTTT
Statistics
Matches: 139, Mismatches: 13, Indels: 2
0.90 0.08 0.01
Matches are distributed among these distances:
148 55 0.40
149 80 0.58
150 4 0.03
ACGTcount: A:0.33, C:0.17, G:0.09, T:0.41
Consensus pattern (150 bp):
AATCTGATTATCAAATATAATTCATGCATTAGTCTAATCCTTACAGTCTAACATTTACAATCAAT
CAACTTTTCTTTTTTTCTATAAAAAAGAATCTGATTCTCAGATATAATTCATGCATTAGTCTAAT
CCTTACAGTCTGACATTTAC
Found at i:132717 original size:91 final size:91
Alignment explanation
Indices: 132562--132736 Score: 287
Period size: 91 Copynumber: 1.9 Consensus size: 91
132552 ATCGATTATC
* * * *
132562 AGATATAATTTATGCATTAGTTTAATCCTTACAGTCTGACATTTACGATCAATCAATTTTTCTTT
1 AGATATAATTCATGCATTAGTCTAATCCTTACAGTCTGACATTTACAATCAATCAACTTTTCTTT
**
132627 TTTTTTATAAAAAAGAATTGATTCTT
66 TTTTCCATAAAAAAGAATTGATTCTT
*
132653 AGATATAATTCATGCATTAGTCTAATCCTTGCAGTCTGACATTTACAATCAATCAACTTTTCTTT
1 AGATATAATTCATGCATTAGTCTAATCCTTACAGTCTGACATTTACAATCAATCAACTTTTCTTT
132718 TTTTCCATAAAAAAGAATT
66 TTTTCCATAAAAAAGAATT
132737 TGAATTTAAT
Statistics
Matches: 77, Mismatches: 7, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
91 77 1.00
ACGTcount: A:0.34, C:0.15, G:0.09, T:0.43
Consensus pattern (91 bp):
AGATATAATTCATGCATTAGTCTAATCCTTACAGTCTGACATTTACAATCAATCAACTTTTCTTT
TTTTCCATAAAAAAGAATTGATTCTT
Found at i:135251 original size:22 final size:22
Alignment explanation
Indices: 135223--135273 Score: 102
Period size: 22 Copynumber: 2.3 Consensus size: 22
135213 CATGTTAAAT
135223 ATGCATGAAACATAATAAAAAA
1 ATGCATGAAACATAATAAAAAA
135245 ATGCATGAAACATAATAAAAAA
1 ATGCATGAAACATAATAAAAAA
135267 ATGCATG
1 ATGCATG
135274 GTCAAAGGCT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 29 1.00
ACGTcount: A:0.59, C:0.10, G:0.12, T:0.20
Consensus pattern (22 bp):
ATGCATGAAACATAATAAAAAA
Found at i:136231 original size:20 final size:20
Alignment explanation
Indices: 136184--136258 Score: 71
Period size: 20 Copynumber: 3.8 Consensus size: 20
136174 AAAAAGACAT
*
136184 AATGTATCGATACATT-GTA
1 AATGTATCGATACATTCATA
*
136203 GAATATATCGATACATTCATA
1 -AATGTATCGATACATTCATA
* * * *
136224 CATGTATCGATATATTGAAA
1 AATGTATCGATACATTCATA
*
136244 AATGCATCGATACAT
1 AATGTATCGATACAT
136259 CAGGGTATGA
Statistics
Matches: 44, Mismatches: 10, Indels: 2
0.79 0.18 0.04
Matches are distributed among these distances:
20 42 0.95
21 2 0.05
ACGTcount: A:0.40, C:0.13, G:0.13, T:0.33
Consensus pattern (20 bp):
AATGTATCGATACATTCATA
Found at i:136253 original size:40 final size:39
Alignment explanation
Indices: 136181--136258 Score: 102
Period size: 40 Copynumber: 2.0 Consensus size: 39
136171 GGTAAAAAGA
* * *
136181 CATAATGTATCGATACATTGTAGAATATATCGATACATT
1 CATAATGTATCGATACATTGAAAAATACATCGATACATT
* *
136220 CATACATGTATCGATATATTGAAAAATGCATCGATACAT
1 CATA-ATGTATCGATACATTGAAAAATACATCGATACAT
136259 CAGGGTATGA
Statistics
Matches: 33, Mismatches: 5, Indels: 1
0.85 0.13 0.03
Matches are distributed among these distances:
39 4 0.12
40 29 0.88
ACGTcount: A:0.40, C:0.14, G:0.13, T:0.33
Consensus pattern (39 bp):
CATAATGTATCGATACATTGAAAAATACATCGATACATT
Found at i:136955 original size:20 final size:22
Alignment explanation
Indices: 136924--136963 Score: 66
Period size: 21 Copynumber: 1.9 Consensus size: 22
136914 TTATTTTTAA
136924 TAAAAAATATTTA-ATTAACTT
1 TAAAAAATATTTATATTAACTT
136945 TAAAAAA-ATTTATATTAAC
1 TAAAAAATATTTATATTAAC
136964 AAAATAAAAT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
20 5 0.28
21 13 0.72
ACGTcount: A:0.55, C:0.05, G:0.00, T:0.40
Consensus pattern (22 bp):
TAAAAAATATTTATATTAACTT
Found at i:136981 original size:20 final size:20
Alignment explanation
Indices: 136925--136981 Score: 55
Period size: 20 Copynumber: 2.8 Consensus size: 20
136915 TATTTTTAAT
*
136925 AAAAAATATTTAATTAACTTTA
1 AAAAAATA-TTAATTAAC-TAA
136947 AAAAAAT-TTATATTAAC-AA
1 AAAAAATATTA-ATTAACTAA
136966 AATAAAATATTAATTA
1 AA-AAAATATTAATTA
136982 TTTTTTAATA
Statistics
Matches: 31, Mismatches: 1, Indels: 8
0.77 0.03 0.20
Matches are distributed among these distances:
19 3 0.10
20 12 0.39
21 9 0.29
22 7 0.23
ACGTcount: A:0.60, C:0.04, G:0.00, T:0.37
Consensus pattern (20 bp):
AAAAAATATTAATTAACTAA
Found at i:137265 original size:123 final size:122
Alignment explanation
Indices: 136925--137282 Score: 453
Period size: 123 Copynumber: 2.9 Consensus size: 122
136915 TATTTTTAAT
* * *
136925 AAAA-AATATTTAATTAACTTTAAAAAAATTTATATTAACAAAATAAAATATT-A--ATTAT-TT
1 AAAATAATATTTAATTAAGTTT--AAAAATTTACATTAACAAATTAAAATATTAATTATTATGTT
* * *
136985 TTTAATAATAAAAAATTTTAAATAAAAATAAAAAAGGTTTATTATTATTATCTTTTAATAAAATT
64 TTTAA-AATAAAAAATTTTAAAT-----TAAAAAAGGTTTTTTATTATAATCTTTTAATAAAATA
*
137050 AAAATAATATTTAATTAAGTTTAAAAAATTACATTAACAAATTAAAAT-TTAATTATTATGTTTT
1 AAAATAATATTTAATTAAGTTTAAAAATTTACATTAACAAATTAAAATATTAATTATTATG-TTT
*
137114 TATAAAAATAAAAAATTTTAAAAT-AAAAAGGTTTTTTATTATAAT-TTTTAATAAAATAA
65 T-T-AAAATAAAAAATTTTAAATTAAAAAAGGTTTTTTATTATAATCTTTTAATAAAAT-A
137173 AAAATAATATTTAATTAAGTTTAAAAATTTACATTAACAAATTAAAATATTAATTATTATGTTTT
1 AAAATAATATTTAATTAAGTTTAAAAATTTACATTAACAAATTAAAATATTAATTATTATGTTTT
*
137238 TAAAATTAAAAAATTTTAAATTAAAAAAAAGTTTTTTATTATAAT
66 TAAAA-TAAAAAATTTTAAATT-AAAAAAGGTTTTTTATTATAAT
137283 AACATTTTTA
Statistics
Matches: 209, Mismatches: 11, Indels: 27
0.85 0.04 0.11
Matches are distributed among these distances:
121 4 0.02
122 28 0.13
123 72 0.34
124 57 0.27
125 4 0.02
126 21 0.10
128 4 0.02
129 17 0.08
130 2 0.01
ACGTcount: A:0.53, C:0.02, G:0.03, T:0.42
Consensus pattern (122 bp):
AAAATAATATTTAATTAAGTTTAAAAATTTACATTAACAAATTAAAATATTAATTATTATGTTTT
TAAAATAAAAAATTTTAAATTAAAAAAGGTTTTTTATTATAATCTTTTAATAAAATA
Found at i:137266 original size:16 final size:16
Alignment explanation
Indices: 137235--137265 Score: 55
Period size: 15 Copynumber: 2.0 Consensus size: 16
137225 ATTATTATGT
137235 TTTTAAAATTAAAAAA
1 TTTTAAAATTAAAAAA
137251 TTTT-AAATTAAAAAA
1 TTTTAAAATTAAAAAA
137266 AAGTTTTTTA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 11 0.73
16 4 0.27
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (16 bp):
TTTTAAAATTAAAAAA
Found at i:138740 original size:16 final size:16
Alignment explanation
Indices: 138721--138775 Score: 58
Period size: 16 Copynumber: 3.4 Consensus size: 16
138711 TTAGACTTAT
138721 ATTATTTTATATTTAA
1 ATTATTTTATATTTAA
*
138737 ATTATTTTAAATTT-A
1 ATTATTTTATATTTAA
* *
138752 ATTTTTTTTTATTTGAA
1 ATTATTTTATATTT-AA
*
138769 ACTATTT
1 ATTATTT
138776 AGGTTTAAAT
Statistics
Matches: 31, Mismatches: 6, Indels: 3
0.77 0.15 0.08
Matches are distributed among these distances:
15 12 0.39
16 13 0.42
17 6 0.19
ACGTcount: A:0.33, C:0.02, G:0.02, T:0.64
Consensus pattern (16 bp):
ATTATTTTATATTTAA
Found at i:139129 original size:22 final size:22
Alignment explanation
Indices: 139088--139158 Score: 74
Period size: 22 Copynumber: 3.3 Consensus size: 22
139078 ATTTATTATA
* *
139088 TAAAATTAAT-TTTTTAATATT
1 TAAAATTAATAATATTAATATT
**
139109 TATTATT-ATAATATTATATATT
1 TAAAATTAATAATATTA-ATATT
*
139131 TAAAATTAATCATATTAATATT
1 TAAAATTAATAATATTAATATT
139153 TAAAAT
1 TAAAAT
139159 AATTGACAAG
Statistics
Matches: 40, Mismatches: 7, Indels: 5
0.77 0.13 0.10
Matches are distributed among these distances:
20 2 0.05
21 9 0.22
22 21 0.52
23 8 0.20
ACGTcount: A:0.46, C:0.01, G:0.00, T:0.52
Consensus pattern (22 bp):
TAAAATTAATAATATTAATATT
Found at i:139130 original size:15 final size:15
Alignment explanation
Indices: 139018--139123 Score: 56
Period size: 16 Copynumber: 6.7 Consensus size: 15
139008 TAAATTTTTG
*
139018 TTATAATATGTTATTT
1 TTATAATAT-TTATTA
139034 TTA-ATATATTTATTTA
1 TTATA-ATATTTA-TTA
* *
139050 TTAAAATATATAGTTATA
1 TTATAATATTTA--T-TA
139068 TATATAATTAATTTATTA
1 T-TATAA-T-ATTTATTA
* *
139086 -TATAAAATTAATT-
1 TTATAATATTTATTA
*
139099 TTTTAATATTTATTA
1 TTATAATATTTATTA
139114 TTATAATATT
1 TTATAATATT
139124 ATATATTTAA
Statistics
Matches: 70, Mismatches: 10, Indels: 21
0.69 0.10 0.21
Matches are distributed among these distances:
14 16 0.23
15 13 0.19
16 23 0.33
17 3 0.04
18 5 0.07
19 5 0.07
20 1 0.01
21 4 0.06
ACGTcount: A:0.42, C:0.00, G:0.02, T:0.57
Consensus pattern (15 bp):
TTATAATATTTATTA
Found at i:139406 original size:2 final size:2
Alignment explanation
Indices: 139399--139442 Score: 88
Period size: 2 Copynumber: 22.0 Consensus size: 2
139389 TACTCTTGAG
139399 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
139441 AT
1 AT
139443 CACTCGAAAT
Statistics
Matches: 42, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 42 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:140100 original size:22 final size:22
Alignment explanation
Indices: 140050--140091 Score: 66
Period size: 22 Copynumber: 1.9 Consensus size: 22
140040 AGCTCATGAC
140050 ATAATTTACTTTTTAATAAAAT
1 ATAATTTACTTTTTAATAAAAT
* *
140072 ATAATTTATTTTTTGATAAA
1 ATAATTTACTTTTTAATAAA
140092 TTACTATTTT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.43, C:0.02, G:0.02, T:0.52
Consensus pattern (22 bp):
ATAATTTACTTTTTAATAAAAT
Found at i:144624 original size:2 final size:2
Alignment explanation
Indices: 144617--144656 Score: 80
Period size: 2 Copynumber: 20.0 Consensus size: 2
144607 AATTAGAAGT
144617 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
144657 AGTAATAATA
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 38 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:145451 original size:5 final size:5
Alignment explanation
Indices: 145441--145466 Score: 52
Period size: 5 Copynumber: 5.2 Consensus size: 5
145431 ATAAGTACTT
145441 GGAAA GGAAA GGAAA GGAAA GGAAA G
1 GGAAA GGAAA GGAAA GGAAA GGAAA G
145467 ATTAAAATTA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 21 1.00
ACGTcount: A:0.58, C:0.00, G:0.42, T:0.00
Consensus pattern (5 bp):
GGAAA
Found at i:145762 original size:4 final size:4
Alignment explanation
Indices: 145755--145782 Score: 56
Period size: 4 Copynumber: 7.0 Consensus size: 4
145745 TCCCTCCCTC
145755 CCTT CCTT CCTT CCTT CCTT CCTT CCTT
1 CCTT CCTT CCTT CCTT CCTT CCTT CCTT
145783 ATTTGCTTTC
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 24 1.00
ACGTcount: A:0.00, C:0.50, G:0.00, T:0.50
Consensus pattern (4 bp):
CCTT
Found at i:155297 original size:6 final size:6
Alignment explanation
Indices: 155288--155316 Score: 58
Period size: 6 Copynumber: 4.8 Consensus size: 6
155278 TCTCCTTCTC
155288 GGCCTT GGCCTT GGCCTT GGCCTT GGCCT
1 GGCCTT GGCCTT GGCCTT GGCCTT GGCCT
155317 CTCAAAACTT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 23 1.00
ACGTcount: A:0.00, C:0.34, G:0.34, T:0.31
Consensus pattern (6 bp):
GGCCTT
Found at i:160837 original size:16 final size:15
Alignment explanation
Indices: 160815--160868 Score: 53
Period size: 16 Copynumber: 3.8 Consensus size: 15
160805 TGTAAAAATT
160815 ATTATATATAATGATA
1 ATTATATATAAT-ATA
* *
160831 TTTATATTTAATATA
1 ATTATATATAATATA
160846 ATTAT-TATAA-ATA
1 ATTATATATAATATA
160859 A-TATAT-TAAT
1 ATTATATATAAT
160869 TAACTTTATA
Statistics
Matches: 32, Mismatches: 4, Indels: 7
0.74 0.09 0.16
Matches are distributed among these distances:
12 6 0.19
13 5 0.16
14 4 0.12
15 7 0.22
16 10 0.31
ACGTcount: A:0.48, C:0.00, G:0.02, T:0.50
Consensus pattern (15 bp):
ATTATATATAATATA
Found at i:163425 original size:236 final size:240
Alignment explanation
Indices: 162994--163482 Score: 801
Period size: 236 Copynumber: 2.0 Consensus size: 240
162984 TGGTCTTTAT
*
162994 AAAGATACCATGGTTGTAACCTAGAAAGTATACCTAGCAGTATGGTAAAAAACCTCCGGAAGCTG
1 AAAGA-ACCATGGTTGTAACCTAGAAAGTATACATAGCAGTATGGTAAAAAACCTCCGGAAGCTG
* *
163059 ATAAAAAAAACAAGAGCCAGCTTTTGCTAAAACAAAATCCCTCTGAGAAATTTTGTAAGAGTCGA
65 ATAAAAAAAACAAGAGCCAGCTTTTGATAAAACAAAATCCATCTGAGAAA---T-T-A-AGTCGA
163124 GGATAAATTAGAAGAAAAATCCAAGAACAATCCTTTTTGCTTTTTGTTTTTTGAAAAATCATAGT
124 GGATAAATTAGAAGAAAAATCCAAGAACAATCCTTTTTGCTTTTTGTTTTTTGAAAAATCATAGT
*
163189 CAGTTTGGAACTTTGCACAGATTCCAAAATTTACTTTTCCTTCCTTATCCTG
189 CAGTTTGGAACTTTGCACAGATTCCAAAATTCACTTTTCCTTCCTTATCCTG
163241 AAAGAACCATGGTTGTAACCTAGAAAGTATACATAGCAGTATGGTAAAAAACCTCCGGAAGCTGA
1 AAAGAACCATGGTTGTAACCTAGAAAGTATACATAGCAGTATGGTAAAAAACCTCCGGAAGCTGA
*
163306 TAAAAGAAAACAAGAGCCAGCTTTTGATAAAACAAAATCCATCTGAG-AA-T-A-TC-TGGATAA
66 TAAAA-AAAACAAGAGCCAGCTTTTGATAAAACAAAATCCATCTGAGAAATTAAGTCGAGGATAA
163366 ATTAGAAGAAAAATCCAAGAACAATCCTTTTT-CTTTTTTGTTTTTTGAAAAATCATAGTCAGTT
130 ATTAGAAGAAAAATCCAAGAACAATCCTTTTTGC-TTTTTGTTTTTTGAAAAATCATAGTCAGTT
*
163430 TTGAACTTTGCACAGATTCCAAAATTCACTTTTCCTTCCTTATCCTG
194 TGGAACTTTGCACAGATTCCAAAATTCACTTTTCCTTCCTTATCCTG
163477 AAAGAA
1 AAAGAA
163483 AAAAGATCAT
Statistics
Matches: 234, Mismatches: 6, Indels: 15
0.92 0.02 0.06
Matches are distributed among these distances:
235 1 0.00
236 119 0.51
237 2 0.01
238 1 0.00
241 1 0.00
246 66 0.28
247 44 0.19
ACGTcount: A:0.38, C:0.17, G:0.15, T:0.30
Consensus pattern (240 bp):
AAAGAACCATGGTTGTAACCTAGAAAGTATACATAGCAGTATGGTAAAAAACCTCCGGAAGCTGA
TAAAAAAAACAAGAGCCAGCTTTTGATAAAACAAAATCCATCTGAGAAATTAAGTCGAGGATAAA
TTAGAAGAAAAATCCAAGAACAATCCTTTTTGCTTTTTGTTTTTTGAAAAATCATAGTCAGTTTG
GAACTTTGCACAGATTCCAAAATTCACTTTTCCTTCCTTATCCTG
Found at i:164779 original size:20 final size:21
Alignment explanation
Indices: 164756--164794 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
164746 ATATTAAGTT
164756 TTTAA-TTTTAATAATTAAAA
1 TTTAATTTTTAATAATTAAAA
*
164776 TTTAATTTTTGATAATTAA
1 TTTAATTTTTAATAATTAA
164795 TTTGATGTAT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 5 0.29
21 12 0.71
ACGTcount: A:0.44, C:0.00, G:0.03, T:0.54
Consensus pattern (21 bp):
TTTAATTTTTAATAATTAAAA
Found at i:164794 original size:28 final size:29
Alignment explanation
Indices: 164741--164795 Score: 69
Period size: 28 Copynumber: 1.9 Consensus size: 29
164731 CAATCTATCG
*
164741 TTAAAATATTAAGTTTTTAATTTTAATAA
1 TTAAAATATTAAGTTTTTAATATTAATAA
*
164770 TTAAAAT-TTAA-TTTTTGATAATTAAT
1 TTAAAATATTAAGTTTTTAAT-ATTAAT
164796 TTGATGTATG
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
27 7 0.30
28 9 0.39
29 7 0.30
ACGTcount: A:0.44, C:0.00, G:0.04, T:0.53
Consensus pattern (29 bp):
TTAAAATATTAAGTTTTTAATATTAATAA
Found at i:167003 original size:15 final size:15
Alignment explanation
Indices: 166983--167032 Score: 64
Period size: 15 Copynumber: 3.3 Consensus size: 15
166973 TTTCGGCCCC
166983 ATTATAATTATAATA
1 ATTATAATTATAATA
*
166998 ATTATAAATATAATA
1 ATTATAATTATAATA
* *
167013 AATATTATTATAATTA
1 ATTATAATTATAA-TA
167029 ATTA
1 ATTA
167033 AAATAAAATA
Statistics
Matches: 29, Mismatches: 5, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
15 24 0.83
16 5 0.17
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (15 bp):
ATTATAATTATAATA
Found at i:169231 original size:2 final size:2
Alignment explanation
Indices: 169224--169252 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
169214 GCATTCGATC
169224 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
169253 GTGTTTGTTT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:175849 original size:3 final size:3
Alignment explanation
Indices: 175841--175879 Score: 78
Period size: 3 Copynumber: 13.0 Consensus size: 3
175831 TAAACATCAA
175841 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
175880 CGTTTTAATA
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 36 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
AAT
Found at i:177249 original size:27 final size:30
Alignment explanation
Indices: 177218--177273 Score: 73
Period size: 31 Copynumber: 1.9 Consensus size: 30
177208 CAAATTTCTT
177218 AATAAA-AT-ATTAT-TATATACATATACA
1 AATAAATATCATTATATATATACATATACA
*
177245 AATAAATCTCCATTATATATATACATATA
1 AATAAATAT-CATTATATATATACATATA
177274 TTTATATACA
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
27 6 0.25
28 1 0.04
30 5 0.21
31 12 0.50
ACGTcount: A:0.52, C:0.11, G:0.00, T:0.38
Consensus pattern (30 bp):
AATAAATATCATTATATATATACATATACA
Found at i:177281 original size:14 final size:14
Alignment explanation
Indices: 177262--177291 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
177252 CTCCATTATA
*
177262 TATATACATATATT
1 TATATACAAATATT
177276 TATATACAAATATT
1 TATATACAAATATT
177290 TA
1 TA
177292 AAAGATAAAT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.47, C:0.07, G:0.00, T:0.47
Consensus pattern (14 bp):
TATATACAAATATT
Found at i:177305 original size:16 final size:16
Alignment explanation
Indices: 177286--177324 Score: 64
Period size: 15 Copynumber: 2.6 Consensus size: 16
177276 TATATACAAA
177286 TATTTAAAAGATAAAT
1 TATTTAAAAGATAAAT
177302 TATTT-AAAGATAAAT
1 TATTTAAAAGATAAAT
177317 T-TTTAAAA
1 TATTTAAAA
177325 ATTAAATAAA
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
14 3 0.14
15 14 0.64
16 5 0.23
ACGTcount: A:0.54, C:0.00, G:0.05, T:0.41
Consensus pattern (16 bp):
TATTTAAAAGATAAAT
Done.