Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold223
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 4172444
ACGTcount: A:0.34, C:0.15, G:0.15, T:0.34
Warning! 17292 characters in sequence are not A, C, G, or T
File 4 of 26
Found at i:686152 original size:28 final size:27
Alignment explanation
Indices: 686118--686172 Score: 83
Period size: 28 Copynumber: 2.0 Consensus size: 27
686108 GATGAAAAAA
*
686118 GTGCCACGGAATTGTGGGCTTCAAAAGG
1 GTGCCACGGAATTGTGGACTT-AAAAGG
*
686146 GTGCCACGGAGTTGTGGACTTAAAAGG
1 GTGCCACGGAATTGTGGACTTAAAAGG
686173 AACAAGGTGC
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
27 6 0.24
28 19 0.76
ACGTcount: A:0.25, C:0.16, G:0.36, T:0.22
Consensus pattern (27 bp):
GTGCCACGGAATTGTGGACTTAAAAGG
Found at i:686205 original size:122 final size:121
Alignment explanation
Indices: 685957--686205 Score: 349
Period size: 121 Copynumber: 2.0 Consensus size: 121
685947 TGAAAAGAGA
* * * * **
685957 AAAAGAGTGCCACGGAGTTGTGGGCTTTAAACAGAAAAAGGTGCCACGGAGTTGTGGGCTTTGAA
1 AAAAGAGTGCCACGGAGTCGTGGACTTTAAACAGAAAAAAGTGCCACGGAATTGTGGGCTTAAAA
* *
686022 GAGTGCCACGAAGTTGTGGGCTTTAAAAGAAGAAGGTGCCACGGAGTTGTGGGCTT
66 GAGTGCCACGAAGTTGTGGACTTTAAAAGAACAAGGTGCCACGGAGTTGTGGGCTT
*
686078 AAAAGAGTGCCACGGAGTCGTGGAC-TTAAAGATGAAAAAAGTGCCACGGAATTGTGGGCTTCAA
1 AAAAGAGTGCCACGGAGTCGTGGACTTTAAACA-GAAAAAAGTGCCACGGAATTGTGGGCTT-AA
* *
686142 AAGGGTGCCACGGAGTTGTGGAC-TTAAAAGGAACAAGGTGCCACGGAGTTGTGGGCTT
64 AAGAGTGCCACGAAGTTGTGGACTTTAAAA-GAACAAGGTGCCACGGAGTTGTGGGCTT
*
686200 TAAAGA
1 AAAAGA
686206 AAAAATGCCA
Statistics
Matches: 113, Mismatches: 12, Indels: 5
0.87 0.09 0.04
Matches are distributed among these distances:
120 6 0.05
121 55 0.49
122 52 0.46
ACGTcount: A:0.31, C:0.14, G:0.34, T:0.21
Consensus pattern (121 bp):
AAAAGAGTGCCACGGAGTCGTGGACTTTAAACAGAAAAAAGTGCCACGGAATTGTGGGCTTAAAA
GAGTGCCACGAAGTTGTGGACTTTAAAAGAACAAGGTGCCACGGAGTTGTGGGCTT
Found at i:687178 original size:1 final size:1
Alignment explanation
Indices: 687168--687204 Score: 65
Period size: 1 Copynumber: 37.0 Consensus size: 1
687158 TGAAAAGGGG
*
687168 TTTTTCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
687205 GTGAAGATTA
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
1 34 1.00
ACGTcount: A:0.00, C:0.03, G:0.00, T:0.97
Consensus pattern (1 bp):
T
Found at i:687541 original size:1 final size:1
Alignment explanation
Indices: 687531--687564 Score: 50
Period size: 1 Copynumber: 34.0 Consensus size: 1
687521 ACCTTTGCAC
* *
687531 TTTTTCTTTTTTTTTTTTTTTTTTTTGTTTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
687565 GTGTTTACTT
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
1 29 1.00
ACGTcount: A:0.00, C:0.03, G:0.03, T:0.94
Consensus pattern (1 bp):
T
Found at i:690534 original size:1 final size:1
Alignment explanation
Indices: 690528--690555 Score: 56
Period size: 1 Copynumber: 28.0 Consensus size: 1
690518 CCTTAAGGGC
690528 AAAAAAAAAAAAAAAAAAAAAAAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAA
690556 GGTGACCGCC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
1 27 1.00
ACGTcount: A:1.00, C:0.00, G:0.00, T:0.00
Consensus pattern (1 bp):
A
Found at i:691273 original size:21 final size:21
Alignment explanation
Indices: 691248--691290 Score: 86
Period size: 21 Copynumber: 2.0 Consensus size: 21
691238 ATCAAAATGA
691248 CATTCATTGCATGACGAGATG
1 CATTCATTGCATGACGAGATG
691269 CATTCATTGCATGACGAGATG
1 CATTCATTGCATGACGAGATG
691290 C
1 C
691291 TCCTGACATG
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.28, C:0.21, G:0.23, T:0.28
Consensus pattern (21 bp):
CATTCATTGCATGACGAGATG
Found at i:694587 original size:52 final size:52
Alignment explanation
Indices: 694517--694637 Score: 217
Period size: 52 Copynumber: 2.3 Consensus size: 52
694507 GAAAATTTAT
694517 CTGCATGTATCGATACATTTAAT-AGTGTATCGATACATCTGGGCAAATTTGC
1 CTGCATGTATCGATACATTTAATGA-TGTATCGATACATCTGGGCAAATTTGC
*
694569 CTGCATGTATCGATACATTTTATGATGTATCGATACATCTGGGCAAATTTGC
1 CTGCATGTATCGATACATTTAATGATGTATCGATACATCTGGGCAAATTTGC
694621 CTGCATGTATCGATACA
1 CTGCATGTATCGATACA
694638 AAGATCAGTG
Statistics
Matches: 67, Mismatches: 1, Indels: 2
0.96 0.01 0.03
Matches are distributed among these distances:
52 66 0.99
53 1 0.01
ACGTcount: A:0.28, C:0.18, G:0.19, T:0.35
Consensus pattern (52 bp):
CTGCATGTATCGATACATTTAATGATGTATCGATACATCTGGGCAAATTTGC
Found at i:694650 original size:52 final size:51
Alignment explanation
Indices: 694517--694657 Score: 205
Period size: 52 Copynumber: 2.7 Consensus size: 51
694507 GAAAATTTAT
694517 CTGCATGTATCGATACATTTAATAGTGTATCGATACATCTGGGCAAATTTGC
1 CTGCATGTATCGATACA-TTAATAGTGTATCGATACATCTGGGCAAATTTGC
*
694569 CTGCATGTATCGATACATT-TTATGATGTATCGATACATCTGGGCAAATTTGC
1 CTGCATGTATCGATACATTAATA-G-TGTATCGATACATCTGGGCAAATTTGC
*
694621 CTGCATGTATCGATACA-AAGATCAGTGTATCGATACA
1 CTGCATGTATCGATACATTA-AT-AGTGTATCGATACA
694658 ATGTATCGAT
Statistics
Matches: 81, Mismatches: 3, Indels: 10
0.86 0.03 0.11
Matches are distributed among these distances:
50 2 0.02
51 3 0.04
52 73 0.90
53 2 0.02
54 1 0.01
ACGTcount: A:0.30, C:0.18, G:0.19, T:0.33
Consensus pattern (51 bp):
CTGCATGTATCGATACATTAATAGTGTATCGATACATCTGGGCAAATTTGC
Found at i:694664 original size:13 final size:13
Alignment explanation
Indices: 694646--694670 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
694636 CAAAGATCAG
694646 TGTATCGATACAA
1 TGTATCGATACAA
694659 TGTATCGATACA
1 TGTATCGATACA
694671 TGTGAGTAAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:694754 original size:13 final size:13
Alignment explanation
Indices: 694736--694760 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
694726 CAAAAAAATA
694736 TGTATCGATACAT
1 TGTATCGATACAT
694749 TGTATCGATACA
1 TGTATCGATACA
694761 ACATTTTATG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:694756 original size:33 final size:33
Alignment explanation
Indices: 694714--694780 Score: 98
Period size: 33 Copynumber: 2.0 Consensus size: 33
694704 AGTAGCTTAA
694714 ATTGTATCGATACAAAAAAATATGTATCGATAC
1 ATTGTATCGATACAAAAAAATATGTATCGATAC
* ***
694747 ATTGTATCGATACAACATTTTATGTATCGATAC
1 ATTGTATCGATACAAAAAAATATGTATCGATAC
694780 A
1 A
694781 AATCGTTGAA
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
33 30 1.00
ACGTcount: A:0.40, C:0.13, G:0.12, T:0.34
Consensus pattern (33 bp):
ATTGTATCGATACAAAAAAATATGTATCGATAC
Found at i:697677 original size:12 final size:12
Alignment explanation
Indices: 697660--697695 Score: 54
Period size: 12 Copynumber: 2.9 Consensus size: 12
697650 ATTAATAAAT
697660 AATTAAATTTAA
1 AATTAAATTTAA
*
697672 AATTAAATATAA
1 AATTAAATTTAA
697684 ATATTAAATTTA
1 A-ATTAAATTTA
697696 TTTATATTAA
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
12 12 0.57
13 9 0.43
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (12 bp):
AATTAAATTTAA
Found at i:697709 original size:26 final size:24
Alignment explanation
Indices: 697638--697729 Score: 88
Period size: 24 Copynumber: 3.9 Consensus size: 24
697628 AAATTTAAGT
697638 TTAAATTTGAATATT-AATAAATAA
1 TTAAATTT-AATATTAAATAAATAA
*
697662 TTAAATTTAAAATTAAATATAA-ATA
1 TTAAATTTAATATTAAATA-AATA-A
*
697687 TTAAATTT-AT-TTATATTAAATAA
1 TTAAATTTAATATTA-AATAAATAA
697710 TT-AATTTAATA-TAAATAAAT
1 TTAAATTTAATATTAAATAAAT
697730 TTAATATTTT
Statistics
Matches: 57, Mismatches: 4, Indels: 16
0.74 0.05 0.21
Matches are distributed among these distances:
22 11 0.19
23 17 0.30
24 18 0.32
25 11 0.19
ACGTcount: A:0.54, C:0.00, G:0.01, T:0.45
Consensus pattern (24 bp):
TTAAATTTAATATTAAATAAATAA
Found at i:697711 original size:18 final size:19
Alignment explanation
Indices: 697688--697732 Score: 58
Period size: 18 Copynumber: 2.4 Consensus size: 19
697678 ATATAAATAT
697688 TAAATTTATTT-ATATTAAA
1 TAAATTTATTTAATA-TAAA
*
697707 T-AATTAATTTAATATAAA
1 TAAATTTATTTAATATAAA
697725 TAAATTTA
1 TAAATTTA
697733 ATATTTTAAT
Statistics
Matches: 22, Mismatches: 2, Indels: 4
0.79 0.07 0.14
Matches are distributed among these distances:
18 13 0.59
19 9 0.41
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (19 bp):
TAAATTTATTTAATATAAA
Found at i:706942 original size:5 final size:5
Alignment explanation
Indices: 706932--706956 Score: 50
Period size: 5 Copynumber: 5.0 Consensus size: 5
706922 GGTCGTTGAG
706932 TGGGA TGGGA TGGGA TGGGA TGGGA
1 TGGGA TGGGA TGGGA TGGGA TGGGA
706957 GGTGGGGACG
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 20 1.00
ACGTcount: A:0.20, C:0.00, G:0.60, T:0.20
Consensus pattern (5 bp):
TGGGA
Found at i:710895 original size:18 final size:18
Alignment explanation
Indices: 710872--710908 Score: 58
Period size: 18 Copynumber: 2.1 Consensus size: 18
710862 AAGAACACCG
710872 AAGAGATTGAGGG-TTCCA
1 AAGAGATTG-GGGATTCCA
710890 AAGAGATTGGGGATTCCA
1 AAGAGATTGGGGATTCCA
710908 A
1 A
710909 CAGTAAAGAA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
17 3 0.17
18 15 0.83
ACGTcount: A:0.35, C:0.11, G:0.32, T:0.22
Consensus pattern (18 bp):
AAGAGATTGGGGATTCCA
Found at i:722423 original size:40 final size:40
Alignment explanation
Indices: 722379--722460 Score: 164
Period size: 40 Copynumber: 2.0 Consensus size: 40
722369 CGTGATCTTT
722379 AACTTCCAATACACTTATTCATCTTACTCGTAAATTATAA
1 AACTTCCAATACACTTATTCATCTTACTCGTAAATTATAA
722419 AACTTCCAATACACTTATTCATCTTACTCGTAAATTATAA
1 AACTTCCAATACACTTATTCATCTTACTCGTAAATTATAA
722459 AA
1 AA
722461 ATTATATTTA
Statistics
Matches: 42, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
40 42 1.00
ACGTcount: A:0.39, C:0.22, G:0.02, T:0.37
Consensus pattern (40 bp):
AACTTCCAATACACTTATTCATCTTACTCGTAAATTATAA
Found at i:722592 original size:21 final size:21
Alignment explanation
Indices: 722562--722607 Score: 58
Period size: 21 Copynumber: 2.2 Consensus size: 21
722552 AATATAAAAA
* *
722562 ATAATTAAAATATTT-TATATT
1 ATAATCAAAA-ATTTATATAAT
722583 ATAATCAAAAATTTATATAAT
1 ATAATCAAAAATTTATATAAT
722604 ATAA
1 ATAA
722608 ATTATTAATA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
20 4 0.18
21 18 0.82
ACGTcount: A:0.54, C:0.02, G:0.00, T:0.43
Consensus pattern (21 bp):
ATAATCAAAAATTTATATAAT
Found at i:723253 original size:6 final size:6
Alignment explanation
Indices: 723244--723326 Score: 82
Period size: 6 Copynumber: 13.8 Consensus size: 6
723234 ACAAGAAGTA
* * **
723244 GAAGAG GAAGAG GAAGTA- GAAGAA GAA-ATA GAAGTA- GAAGAG GAAGTT
1 GAAGAG GAAGAG GAAG-AG GAAGAG GAAGA-G GAAG-AG GAAGAG GAAGAG
723292 GAAGAG GAAGAG GAAGAG GAAGAG GAAGAG GAAGA
1 GAAGAG GAAGAG GAAGAG GAAGAG GAAGAG GAAGA
723327 AGACGATGAT
Statistics
Matches: 67, Mismatches: 4, Indels: 12
0.81 0.05 0.14
Matches are distributed among these distances:
5 3 0.04
6 62 0.93
7 1 0.01
8 1 0.01
ACGTcount: A:0.52, C:0.00, G:0.42, T:0.06
Consensus pattern (6 bp):
GAAGAG
Found at i:723261 original size:18 final size:18
Alignment explanation
Indices: 723238--723326 Score: 94
Period size: 18 Copynumber: 4.9 Consensus size: 18
723228 GCAACTACAA
723238 GAAGTAGAAGAGGAAGAG
1 GAAGTAGAAGAGGAAGAG
* *
723256 GAAGTAGAAGAAGAA-ATA
1 GAAGTAGAAGAGGAAGA-G
**
723274 GAAGTAGAAGAGGAAGTT
1 GAAGTAGAAGAGGAAGAG
723292 GAAG-AGGAAGAGGAAGAG
1 GAAGTA-GAAGAGGAAGAG
723310 GAAG-AGGAAGAGGAAGA
1 GAAGTA-GAAGAGGAAGA
723327 AGACGATGAT
Statistics
Matches: 61, Mismatches: 7, Indels: 6
0.82 0.09 0.08
Matches are distributed among these distances:
17 2 0.03
18 59 0.97
ACGTcount: A:0.52, C:0.00, G:0.42, T:0.07
Consensus pattern (18 bp):
GAAGTAGAAGAGGAAGAG
Found at i:727724 original size:28 final size:29
Alignment explanation
Indices: 727679--727738 Score: 104
Period size: 28 Copynumber: 2.1 Consensus size: 29
727669 TAATTTAGGT
*
727679 TAGGGTTTTTGGACATGACAGATCTAAGC
1 TAGGGTTTTTGGACATGACAGATCCAAGC
727708 TAGGGTTTTT-GACATGACAGATCCAAGC
1 TAGGGTTTTTGGACATGACAGATCCAAGC
727736 TAG
1 TAG
727739 CCACAAAACC
Statistics
Matches: 30, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
28 20 0.67
29 10 0.33
ACGTcount: A:0.28, C:0.15, G:0.27, T:0.30
Consensus pattern (29 bp):
TAGGGTTTTTGGACATGACAGATCCAAGC
Found at i:737138 original size:54 final size:54
Alignment explanation
Indices: 737078--737185 Score: 157
Period size: 54 Copynumber: 2.0 Consensus size: 54
737068 ATTCATATCT
*
737078 AATATTTTTA-TAAGACACAGATCAAAAATAAATATAAAAATATAACT-TTTTAAA
1 AATATTTTTATTAA-ACACAAATCAAAAATAAATATAAAAATATAA-TATTTTAAA
* *
737132 AATATTTTTATTCAACACAAATCAAAAATAAATATATAAATATAATATTTTAAA
1 AATATTTTTATTAAACACAAATCAAAAATAAATATAAAAATATAATATTTTAAA
737186 TATTATAAAT
Statistics
Matches: 49, Mismatches: 3, Indels: 4
0.88 0.05 0.07
Matches are distributed among these distances:
53 1 0.02
54 46 0.94
55 2 0.04
ACGTcount: A:0.56, C:0.07, G:0.02, T:0.35
Consensus pattern (54 bp):
AATATTTTTATTAAACACAAATCAAAAATAAATATAAAAATATAATATTTTAAA
Found at i:737195 original size:23 final size:21
Alignment explanation
Indices: 737160--737215 Score: 67
Period size: 22 Copynumber: 2.5 Consensus size: 21
737150 AAATCAAAAA
*
737160 TAAATATATAAATATAATATTT
1 TAAATATATAAATAGAATA-TT
*
737182 TAAATATTATAAATAGGATATT
1 TAAATA-TATAAATAGAATATT
737204 TAAATAATATAA
1 TAAAT-ATATAA
737216 TTATTTTTAA
Statistics
Matches: 30, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
22 18 0.60
23 12 0.40
ACGTcount: A:0.55, C:0.00, G:0.04, T:0.41
Consensus pattern (21 bp):
TAAATATATAAATAGAATATT
Found at i:745781 original size:6 final size:6
Alignment explanation
Indices: 745760--745798 Score: 60
Period size: 6 Copynumber: 6.2 Consensus size: 6
745750 AGCTCAACGA
745760 CCCTCC CTCACTCC CCCTCC CCCTCC CCCTCC CCCTCC C
1 CCCTCC C-C-CTCC CCCTCC CCCTCC CCCTCC CCCTCC C
745799 TCTTTCTCTT
Statistics
Matches: 31, Mismatches: 0, Indels: 4
0.89 0.00 0.11
Matches are distributed among these distances:
6 24 0.77
7 2 0.06
8 5 0.16
ACGTcount: A:0.03, C:0.79, G:0.00, T:0.18
Consensus pattern (6 bp):
CCCTCC
Found at i:747836 original size:5 final size:5
Alignment explanation
Indices: 747820--747880 Score: 54
Period size: 5 Copynumber: 11.6 Consensus size: 5
747810 ATATTTTAAT
*
747820 AATTA AAATA AATTA AATTA ATATTTTA AATT- AATTA CAATTTA AATTA
1 AATTA AATTA AATTA AATTA A-A--TTA AATTA AATTA -AA-TTA AATTA
747869 AATT- AATTA AAT
1 AATTA AATTA AAT
747881 CAATTTTAAT
Statistics
Matches: 47, Mismatches: 2, Indels: 14
0.75 0.03 0.22
Matches are distributed among these distances:
4 8 0.17
5 26 0.55
6 5 0.11
7 4 0.09
8 4 0.09
ACGTcount: A:0.56, C:0.02, G:0.00, T:0.43
Consensus pattern (5 bp):
AATTA
Found at i:747841 original size:34 final size:36
Alignment explanation
Indices: 747796--747876 Score: 91
Period size: 34 Copynumber: 2.4 Consensus size: 36
747786 ATATTAATTT
* *
747796 AATTAATTTAATTTATATTTTAA-TAATTA-AA-ATA
1 AATTAAATTAATTTAT-TTTAAATTAATTACAATATA
*
747830 AATTAAATTAA--TATTTTAAATTAATTACAATTTA
1 AATTAAATTAATTTATTTTAAATTAATTACAATATA
747864 AATTAAATTAATT
1 AATTAAATTAATT
747877 AAATCAATTT
Statistics
Matches: 39, Mismatches: 3, Indels: 8
0.78 0.06 0.16
Matches are distributed among these distances:
31 5 0.13
32 9 0.23
33 2 0.05
34 23 0.59
ACGTcount: A:0.51, C:0.01, G:0.00, T:0.48
Consensus pattern (36 bp):
AATTAAATTAATTTATTTTAAATTAATTACAATATA
Found at i:747850 original size:22 final size:23
Alignment explanation
Indices: 747815--747870 Score: 62
Period size: 22 Copynumber: 2.5 Consensus size: 23
747805 AATTTATATT
747815 TTAATAATTAAAATAAATTA-AA
1 TTAATAATTAAAATAAATTACAA
* * *
747837 TTAATATTTTAAATTAATTACAA
1 TTAATAATTAAAATAAATTACAA
*
747860 TTTA-AATTAAA
1 TTAATAATTAAA
747871 TTAATTAAAT
Statistics
Matches: 27, Mismatches: 6, Indels: 2
0.77 0.17 0.06
Matches are distributed among these distances:
22 22 0.81
23 5 0.19
ACGTcount: A:0.55, C:0.02, G:0.00, T:0.43
Consensus pattern (23 bp):
TTAATAATTAAAATAAATTACAA
Found at i:747872 original size:17 final size:18
Alignment explanation
Indices: 747828--747875 Score: 66
Period size: 17 Copynumber: 2.8 Consensus size: 18
747818 ATAATTAAAA
747828 TAAATTAAATTAATATTT
1 TAAATTAAATTAATATTT
747846 TAAATT-AATTACA-A-TT
1 TAAATTAAATTA-ATATTT
747862 TAAATTAAATTAAT
1 TAAATTAAATTAAT
747876 TAAATCAATT
Statistics
Matches: 27, Mismatches: 0, Indels: 7
0.79 0.00 0.21
Matches are distributed among these distances:
16 9 0.33
17 11 0.41
18 7 0.26
ACGTcount: A:0.52, C:0.02, G:0.00, T:0.46
Consensus pattern (18 bp):
TAAATTAAATTAATATTT
Found at i:748583 original size:22 final size:21
Alignment explanation
Indices: 748545--748597 Score: 60
Period size: 18 Copynumber: 2.6 Consensus size: 21
748535 ATATTTTATT
748545 TAAATTTAATTATAAAATATA
1 TAAATTTAATTATAAAATATA
748566 TAAATATTAA-TAT-AAA-A-A
1 TAAAT-TTAATTATAAAATATA
748584 TAAATTTAAATTAT
1 TAAATTT-AATTAT
748598 TTTTTAATTA
Statistics
Matches: 29, Mismatches: 0, Indels: 8
0.78 0.00 0.22
Matches are distributed among these distances:
17 2 0.07
18 8 0.28
19 4 0.14
20 3 0.10
21 8 0.28
22 4 0.14
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (21 bp):
TAAATTTAATTATAAAATATA
Found at i:749753 original size:13 final size:14
Alignment explanation
Indices: 749727--749755 Score: 51
Period size: 13 Copynumber: 2.1 Consensus size: 14
749717 TTAAAATTTA
749727 ATTATTTATTAAAT
1 ATTATTTATTAAAT
749741 ATTATTT-TTAAAT
1 ATTATTTATTAAAT
749754 AT
1 AT
749756 GATTGAATAA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 8 0.53
14 7 0.47
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (14 bp):
ATTATTTATTAAAT
Found at i:749964 original size:7 final size:7
Alignment explanation
Indices: 749949--749988 Score: 53
Period size: 7 Copynumber: 5.4 Consensus size: 7
749939 TATTTATATC
749949 ATATTTT
1 ATATTTT
*
749956 ATTTTTT
1 ATATTTT
749963 ATATTTT
1 ATATTTT
749970 ATCATATTT
1 AT-AT-TTT
749979 ATATTTT
1 ATATTTT
749986 ATA
1 ATA
749989 ATCATGTTCA
Statistics
Matches: 29, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
7 20 0.69
8 4 0.14
9 5 0.17
ACGTcount: A:0.30, C:0.03, G:0.00, T:0.68
Consensus pattern (7 bp):
ATATTTT
Found at i:749975 original size:24 final size:26
Alignment explanation
Indices: 749937--749985 Score: 84
Period size: 25 Copynumber: 2.0 Consensus size: 26
749927 AATATGTTAA
749937 TATATTTATATCATATTT-TATTTTT
1 TATATTTATATCATATTTATATTTTT
749962 TATATTT-TATCATATTTATATTTT
1 TATATTTATATCATATTTATATTTT
749986 ATAATCATGT
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
24 10 0.43
25 13 0.57
ACGTcount: A:0.29, C:0.04, G:0.00, T:0.67
Consensus pattern (26 bp):
TATATTTATATCATATTTATATTTTT
Found at i:750323 original size:13 final size:13
Alignment explanation
Indices: 750290--750328 Score: 51
Period size: 15 Copynumber: 2.8 Consensus size: 13
750280 TTATAAATTT
*
750290 TAAATTTATTATA
1 TAAATTAATTATA
750303 TATTAATTAATTATA
1 TA--AATTAATTATA
750318 TAAATTAATTA
1 TAAATTAATTA
750329 AATTAAATTT
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
13 11 0.48
15 12 0.52
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (13 bp):
TAAATTAATTATA
Found at i:750354 original size:12 final size:11
Alignment explanation
Indices: 750335--750368 Score: 50
Period size: 12 Copynumber: 2.9 Consensus size: 11
750325 ATTAAATTAA
750335 ATTTTATATTT
1 ATTTTATATTT
750346 ATATTTATATTT
1 AT-TTTATATTT
750358 ATTTTACTATT
1 ATTTTA-TATT
750369 ACATCATTAT
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
11 6 0.29
12 15 0.71
ACGTcount: A:0.29, C:0.03, G:0.00, T:0.68
Consensus pattern (11 bp):
ATTTTATATTT
Found at i:750459 original size:3 final size:3
Alignment explanation
Indices: 750431--750490 Score: 59
Period size: 3 Copynumber: 19.3 Consensus size: 3
750421 ATATAAAATT
* *
750431 TTA TTA CTTA TAA TAA TTAA TT- TTA TTA TTA TTA TTA TTA TTA TTA
1 TTA TTA -TTA TTA TTA TT-A TTA TTA TTA TTA TTA TTA TTA TTA TTA
*
750477 TTTA ATA TTA TTA T
1 -TTA TTA TTA TTA T
750491 CAAATTACTT
Statistics
Matches: 49, Mismatches: 4, Indels: 8
0.80 0.07 0.13
Matches are distributed among these distances:
2 2 0.04
3 38 0.78
4 9 0.18
ACGTcount: A:0.37, C:0.02, G:0.00, T:0.62
Consensus pattern (3 bp):
TTA
Found at i:755360 original size:5 final size:5
Alignment explanation
Indices: 755350--755405 Score: 51
Period size: 5 Copynumber: 10.6 Consensus size: 5
755340 TATCCTTTTC
**
755350 ATAAT ATAAT ATAAT ATAA- ATATAT ATTTTT CATAAT ATAAT ATAAT
1 ATAAT ATAAT ATAAT ATAAT ATA-AT A-TAAT -ATAAT ATAAT ATAAT
755397 ATGAAT ATA
1 AT-AAT ATA
755406 TGTTTTGAAT
Statistics
Matches: 42, Mismatches: 4, Indels: 10
0.75 0.07 0.18
Matches are distributed among these distances:
4 3 0.07
5 28 0.67
6 9 0.21
7 2 0.05
ACGTcount: A:0.54, C:0.02, G:0.02, T:0.43
Consensus pattern (5 bp):
ATAAT
Found at i:755381 original size:32 final size:32
Alignment explanation
Indices: 755345--755411 Score: 116
Period size: 32 Copynumber: 2.1 Consensus size: 32
755335 GTTTATATCC
755345 TTTTCATAATATAATATAATATAAATATATAT
1 TTTTCATAATATAATATAATATAAATATATAT
* *
755377 TTTTCATAATATAATATAATATGAATATATGT
1 TTTTCATAATATAATATAATATAAATATATAT
755409 TTT
1 TTT
755412 GAATATTACT
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
32 33 1.00
ACGTcount: A:0.45, C:0.03, G:0.03, T:0.49
Consensus pattern (32 bp):
TTTTCATAATATAATATAATATAAATATATAT
Found at i:755901 original size:19 final size:17
Alignment explanation
Indices: 755879--755918 Score: 53
Period size: 17 Copynumber: 2.2 Consensus size: 17
755869 TTATAATAAT
*
755879 ATTATTCATACTTAATTTA
1 ATTATTC-TACTCAA-TTA
755898 ATTATTCTACTCAATTA
1 ATTATTCTACTCAATTA
755915 ATTA
1 ATTA
755919 AAATTTTAAT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
17 7 0.35
18 6 0.30
19 7 0.35
ACGTcount: A:0.38, C:0.12, G:0.00, T:0.50
Consensus pattern (17 bp):
ATTATTCTACTCAATTA
Found at i:755959 original size:19 final size:18
Alignment explanation
Indices: 755913--755963 Score: 57
Period size: 19 Copynumber: 2.7 Consensus size: 18
755903 TCTACTCAAT
*
755913 TAATTAAAATTTTAATTGA
1 TAATTAAAA-TTTAATTAA
*
755932 TTATATAAAATTTAATTAA
1 TAAT-TAAAATTTAATTAA
755951 TAAATTAAAATTT
1 T-AATTAAAATTT
755964 TATATGTAAT
Statistics
Matches: 27, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
19 20 0.74
20 7 0.26
ACGTcount: A:0.51, C:0.00, G:0.02, T:0.47
Consensus pattern (18 bp):
TAATTAAAATTTAATTAA
Found at i:756335 original size:4 final size:4
Alignment explanation
Indices: 756326--756355 Score: 60
Period size: 4 Copynumber: 7.5 Consensus size: 4
756316 CTGTTTATCA
756326 AAAT AAAT AAAT AAAT AAAT AAAT AAAT AA
1 AAAT AAAT AAAT AAAT AAAT AAAT AAAT AA
756356 TATTTATTCT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 26 1.00
ACGTcount: A:0.77, C:0.00, G:0.00, T:0.23
Consensus pattern (4 bp):
AAAT
Found at i:756607 original size:24 final size:24
Alignment explanation
Indices: 756520--756607 Score: 72
Period size: 24 Copynumber: 3.5 Consensus size: 24
756510 ATCGTTTTTT
*
756520 TTTTACTTTTTTAAAATTAATTAATA
1 TTTTA-TTTATTAAAATTAA-TAATA
*
756546 TTTTATTT-TTAATAA-AAATAAATA
1 TTTTATTTATTAA-AATTAAT-AATA
*
756570 TTTTATTAAATATTAAAATTAATAATT
1 TTTTATT---TATTAAAATTAATAATA
756597 TTTTATTTATT
1 TTTTATTTATT
756608 TTAATATATT
Statistics
Matches: 52, Mismatches: 3, Indels: 16
0.73 0.04 0.23
Matches are distributed among these distances:
23 1 0.02
24 21 0.40
25 5 0.10
26 5 0.10
27 13 0.25
28 7 0.13
ACGTcount: A:0.42, C:0.01, G:0.00, T:0.57
Consensus pattern (24 bp):
TTTTATTTATTAAAATTAATAATA
Found at i:756777 original size:22 final size:23
Alignment explanation
Indices: 756752--756795 Score: 72
Period size: 22 Copynumber: 2.0 Consensus size: 23
756742 AATTAACATT
756752 TATAATTATTAA-TAAAAAATTA
1 TATAATTATTAATTAAAAAATTA
*
756774 TATAATTATTAATTAAATAATT
1 TATAATTATTAATTAAAAAATT
756796 CTCCATCATC
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
22 12 0.60
23 8 0.40
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (23 bp):
TATAATTATTAATTAAAAAATTA
Found at i:756791 original size:20 final size:19
Alignment explanation
Indices: 756740--756791 Score: 59
Period size: 22 Copynumber: 2.5 Consensus size: 19
756730 ATAAATTTAC
756740 TTAATTAACATTTATAATTA
1 TTAATTAA-ATTTATAATTA
*
756760 TTAATAAAAAATTATATAATTA
1 TTAAT--TAAATT-TATAATTA
756782 TTAATTAAAT
1 TTAATTAAAT
756792 AATTCTCCAT
Statistics
Matches: 27, Mismatches: 2, Indels: 6
0.77 0.06 0.17
Matches are distributed among these distances:
20 9 0.33
21 3 0.11
22 15 0.56
ACGTcount: A:0.52, C:0.02, G:0.00, T:0.46
Consensus pattern (19 bp):
TTAATTAAATTTATAATTA
Found at i:761947 original size:15 final size:14
Alignment explanation
Indices: 761915--761955 Score: 55
Period size: 15 Copynumber: 2.8 Consensus size: 14
761905 TTTATTGTCA
761915 TTAAAATTTAATAAT
1 TTAAAATTT-ATAAT
*
761930 TTAATATTTATAATT
1 TTAAAATTTATAA-T
761945 TTAAAATTTAT
1 TTAAAATTTAT
761956 CTTTTATATA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
14 4 0.17
15 19 0.83
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (14 bp):
TTAAAATTTATAAT
Found at i:762605 original size:76 final size:76
Alignment explanation
Indices: 762525--762674 Score: 282
Period size: 76 Copynumber: 2.0 Consensus size: 76
762515 TTAATCATAG
*
762525 AAATATATTCTGTAATTTTATTTTTTTATTATTTTTTATAATCAATAGGTTTCGAGTTAGATTTA
1 AAATATATTCTGTAATTTTATTTTTTTATTATTTTCTATAATCAATAGGTTTCGAGTTAGATTTA
762590 TATAATGATCC
66 TATAATGATCC
*
762601 AAATATATTTTGTAATTTTATTTTTTTATTATTTTCTATAATCAATAGGTTTCGAGTTAGATTTA
1 AAATATATTCTGTAATTTTATTTTTTTATTATTTTCTATAATCAATAGGTTTCGAGTTAGATTTA
762666 TATAATGAT
66 TATAATGAT
762675 TAGATTATCA
Statistics
Matches: 72, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
76 72 1.00
ACGTcount: A:0.32, C:0.05, G:0.09, T:0.53
Consensus pattern (76 bp):
AAATATATTCTGTAATTTTATTTTTTTATTATTTTCTATAATCAATAGGTTTCGAGTTAGATTTA
TATAATGATCC
Found at i:763466 original size:18 final size:19
Alignment explanation
Indices: 763430--763468 Score: 53
Period size: 19 Copynumber: 2.1 Consensus size: 19
763420 ATAATTTATA
**
763430 AATAATTTTTATAGTAAAT
1 AATAATTTTTATAAAAAAT
763449 AATAATTTTT-TAAAAAAT
1 AATAATTTTTATAAAAAAT
763467 AA
1 AA
763469 AAATGAAGTT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
18 8 0.44
19 10 0.56
ACGTcount: A:0.54, C:0.00, G:0.03, T:0.44
Consensus pattern (19 bp):
AATAATTTTTATAAAAAAT
Found at i:763551 original size:19 final size:19
Alignment explanation
Indices: 763503--763553 Score: 70
Period size: 19 Copynumber: 2.7 Consensus size: 19
763493 TTTAATTATA
763503 TATTAAAAAATATATTGTT
1 TATTAAAAAATATATTGTT
763522 T-TGTAAAAAATATATT-TT
1 TAT-TAAAAAATATATTGTT
763540 TATTAAATAAATAT
1 TATTAAA-AAATAT
763554 TATATTAATA
Statistics
Matches: 29, Mismatches: 0, Indels: 6
0.83 0.00 0.17
Matches are distributed among these distances:
18 8 0.28
19 21 0.72
ACGTcount: A:0.49, C:0.00, G:0.04, T:0.47
Consensus pattern (19 bp):
TATTAAAAAATATATTGTT
Found at i:765217 original size:13 final size:15
Alignment explanation
Indices: 765191--765231 Score: 50
Period size: 15 Copynumber: 2.7 Consensus size: 15
765181 TTTTTAAAAA
765191 TAATATTTAATAAA-TT
1 TAATATTT--TAAATTT
765207 TAA-ATTTTAAATTT
1 TAATATTTTAAATTT
765221 TAATATTTTAA
1 TAATATTTTAA
765232 TTGTAATTTT
Statistics
Matches: 23, Mismatches: 0, Indels: 5
0.82 0.00 0.18
Matches are distributed among these distances:
13 4 0.17
14 5 0.22
15 11 0.48
16 3 0.13
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (15 bp):
TAATATTTTAAATTT
Found at i:767446 original size:6 final size:6
Alignment explanation
Indices: 767437--767473 Score: 74
Period size: 6 Copynumber: 6.2 Consensus size: 6
767427 ATGCTGCTGC
767437 TGGCTA TGGCTA TGGCTA TGGCTA TGGCTA TGGCTA T
1 TGGCTA TGGCTA TGGCTA TGGCTA TGGCTA TGGCTA T
767474 CTGGAGATAC
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 31 1.00
ACGTcount: A:0.16, C:0.16, G:0.32, T:0.35
Consensus pattern (6 bp):
TGGCTA
Found at i:767816 original size:23 final size:24
Alignment explanation
Indices: 767790--767844 Score: 67
Period size: 23 Copynumber: 2.3 Consensus size: 24
767780 ATTTACATTT
767790 TATTATATCATAAATATATTA-TA
1 TATTATATCATAAATATATTATTA
* * **
767813 TATTTTATTATATTTATATTATTA
1 TATTATATCATAAATATATTATTA
767837 TATTATAT
1 TATTATAT
767845 TTTAATTATT
Statistics
Matches: 26, Mismatches: 5, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
23 17 0.65
24 9 0.35
ACGTcount: A:0.40, C:0.02, G:0.00, T:0.58
Consensus pattern (24 bp):
TATTATATCATAAATATATTATTA
Found at i:767825 original size:19 final size:19
Alignment explanation
Indices: 767803--767862 Score: 70
Period size: 19 Copynumber: 3.1 Consensus size: 19
767793 TATATCATAA
767803 ATATATTATA-TATTTTATT
1 ATAT-TTATATTATTTTATT
*
767822 ATATTTATATTATTATATT
1 ATATTTATATTATTTTATT
767841 ATATTT-TAATTATTTTTATT
1 ATATTTAT-ATTA-TTTTATT
767861 AT
1 AT
767863 TCATAATCAC
Statistics
Matches: 36, Mismatches: 2, Indels: 5
0.84 0.05 0.12
Matches are distributed among these distances:
18 6 0.17
19 22 0.61
20 8 0.22
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (19 bp):
ATATTTATATTATTTTATT
Found at i:769056 original size:25 final size:26
Alignment explanation
Indices: 768990--769057 Score: 75
Period size: 27 Copynumber: 2.5 Consensus size: 26
768980 TGTTTTTATG
* *
768990 TATTTTATTTAAAAATTTAATAATTCA
1 TATTTT-TTTATAAATTTAATAATTAA
*
769017 TATTTTTTATCATAATTTTAAT-ATTAA
1 TATTTTTT-T-ATAAATTTAATAATTAA
769044 TATTTTTTTATAAA
1 TATTTTTTTATAAA
769058 AATAATATTT
Statistics
Matches: 35, Mismatches: 4, Indels: 6
0.78 0.09 0.13
Matches are distributed among these distances:
25 4 0.11
26 3 0.09
27 19 0.54
28 9 0.26
ACGTcount: A:0.40, C:0.03, G:0.00, T:0.57
Consensus pattern (26 bp):
TATTTTTTTATAAATTTAATAATTAA
Found at i:769438 original size:21 final size:18
Alignment explanation
Indices: 769421--769465 Score: 63
Period size: 19 Copynumber: 2.3 Consensus size: 18
769411 ATTATATAAG
769421 TTTTTTGTATATTTATATA
1 TTTTTTG-ATATTTATATA
769440 TTTGTTTGATATTTATATTA
1 TTT-TTTGATATTTATA-TA
769460 TTTTTT
1 TTTTTT
769466 ATAATGTATT
Statistics
Matches: 24, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
19 15 0.62
20 9 0.38
ACGTcount: A:0.22, C:0.00, G:0.07, T:0.71
Consensus pattern (18 bp):
TTTTTTGATATTTATATA
Found at i:769451 original size:19 final size:21
Alignment explanation
Indices: 769424--769462 Score: 64
Period size: 19 Copynumber: 2.0 Consensus size: 21
769414 ATATAAGTTT
769424 TTTGTATATTTATA-TATTTG
1 TTTGTATATTTATATTATTTG
769444 TTTG-ATATTTATATTATTT
1 TTTGTATATTTATATTATTT
769463 TTTATAATGT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
19 9 0.50
20 9 0.50
ACGTcount: A:0.26, C:0.00, G:0.08, T:0.67
Consensus pattern (21 bp):
TTTGTATATTTATATTATTTG
Found at i:769519 original size:22 final size:23
Alignment explanation
Indices: 769451--769523 Score: 87
Period size: 22 Copynumber: 3.2 Consensus size: 23
769441 TTGTTTGATA
*
769451 TTTATATTATTTTTTATA-ATGT
1 TTTATATTATTTTTTATATATAT
* * *
769473 ATTATATTATATATATATATATAT
1 TTTATATTAT-TTTTTATATATAT
769497 TTTA-ATTATTTTTTATATATAT
1 TTTATATTATTTTTTATATATAT
769519 TTTAT
1 TTTAT
769524 GTATGTAATA
Statistics
Matches: 41, Mismatches: 7, Indels: 5
0.77 0.13 0.09
Matches are distributed among these distances:
22 24 0.59
23 11 0.27
24 6 0.15
ACGTcount: A:0.34, C:0.00, G:0.01, T:0.64
Consensus pattern (23 bp):
TTTATATTATTTTTTATATATAT
Found at i:769798 original size:2 final size:2
Alignment explanation
Indices: 769791--769816 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
769781 ACATATCCTA
769791 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
769817 TTTTTGGTAT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:775837 original size:15 final size:15
Alignment explanation
Indices: 775819--775855 Score: 56
Period size: 15 Copynumber: 2.5 Consensus size: 15
775809 ACATTTAATG
775819 AAGAACACCAAGAAC
1 AAGAACACCAAGAAC
**
775834 AAGAACACTGAGAAC
1 AAGAACACCAAGAAC
775849 AAGAACA
1 AAGAACA
775856 ACTGATTTGT
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
15 20 1.00
ACGTcount: A:0.59, C:0.22, G:0.16, T:0.03
Consensus pattern (15 bp):
AAGAACACCAAGAAC
Found at i:777235 original size:38 final size:38
Alignment explanation
Indices: 777193--777303 Score: 90
Period size: 36 Copynumber: 2.9 Consensus size: 38
777183 TTGATTCATA
777193 TTATTATTTAAAATAATATTAAATAATTAAATTTTATT
1 TTATTATTTAAAATAATATTAAATAATTAAATTTTATT
* ***
777231 TTATT-TAT-AAATAA-ATTTAAATAA--AAATAAAATT
1 TTATTATTTAAAATAATA-TTAAATAATTAAATTTTATT
*
777265 TTAATTATTTATCAATAAT-TTAAATTAATTTAAATTTTA
1 TT-ATTATTTA-AAATAATATTAAA-TAA-TTAAATTTTA
777304 AAAATTTTTA
Statistics
Matches: 54, Mismatches: 9, Indels: 17
0.68 0.11 0.21
Matches are distributed among these distances:
34 9 0.17
35 4 0.07
36 16 0.30
37 7 0.13
38 13 0.24
41 5 0.09
ACGTcount: A:0.50, C:0.01, G:0.00, T:0.50
Consensus pattern (38 bp):
TTATTATTTAAAATAATATTAAATAATTAAATTTTATT
Found at i:777430 original size:33 final size:33
Alignment explanation
Indices: 777393--777467 Score: 116
Period size: 33 Copynumber: 2.3 Consensus size: 33
777383 GCATGTTTAA
*
777393 ATGCCCTTAGAGGGAGGGTGAGTGTTTCCTTGG
1 ATGCCCTTAGAGGGAGGGTGAGTGTTTCATTGG
* *
777426 ATGCCCTTAGAGGGAGGGTGTGTTTTTCATTGG
1 ATGCCCTTAGAGGGAGGGTGAGTGTTTCATTGG
777459 ATG-CCTTAG
1 ATGCCCTTAG
777468 CTGTTGCACT
Statistics
Matches: 39, Mismatches: 3, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
32 6 0.15
33 33 0.85
ACGTcount: A:0.16, C:0.15, G:0.36, T:0.33
Consensus pattern (33 bp):
ATGCCCTTAGAGGGAGGGTGAGTGTTTCATTGG
Found at i:778973 original size:13 final size:13
Alignment explanation
Indices: 778955--778984 Score: 60
Period size: 13 Copynumber: 2.3 Consensus size: 13
778945 GGGTACGAAG
778955 ATATGACCCTCCA
1 ATATGACCCTCCA
778968 ATATGACCCTCCA
1 ATATGACCCTCCA
778981 ATAT
1 ATAT
778985 ACTGAAAAGC
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 17 1.00
ACGTcount: A:0.33, C:0.33, G:0.07, T:0.27
Consensus pattern (13 bp):
ATATGACCCTCCA
Found at i:782884 original size:2 final size:2
Alignment explanation
Indices: 782877--782901 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
782867 AAAATTTTAG
782877 AC AC AC AC AC AC AC AC AC AC AC AC A
1 AC AC AC AC AC AC AC AC AC AC AC AC A
782902 TATATATATA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.52, C:0.48, G:0.00, T:0.00
Consensus pattern (2 bp):
AC
Found at i:783953 original size:5 final size:5
Alignment explanation
Indices: 783943--783970 Score: 56
Period size: 5 Copynumber: 5.6 Consensus size: 5
783933 TCTGTATATA
783943 TTTAT TTTAT TTTAT TTTAT TTTAT TTT
1 TTTAT TTTAT TTTAT TTTAT TTTAT TTT
783971 TGGGTCCCAC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 23 1.00
ACGTcount: A:0.18, C:0.00, G:0.00, T:0.82
Consensus pattern (5 bp):
TTTAT
Found at i:789428 original size:17 final size:17
Alignment explanation
Indices: 789400--789453 Score: 54
Period size: 17 Copynumber: 3.1 Consensus size: 17
789390 AGATCTAATA
* *
789400 TAAATATATTTAATTTT
1 TAAATATTTTTAATATT
*
789417 TTAATATTTTTATATATT
1 TAAATATTTTTA-ATATT
* *
789435 TAAATTTTTTTAAAATT
1 TAAATATTTTTAATATT
789452 TA
1 TA
789454 TATTTTATAT
Statistics
Matches: 30, Mismatches: 6, Indels: 2
0.79 0.16 0.05
Matches are distributed among these distances:
17 16 0.53
18 14 0.47
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (17 bp):
TAAATATTTTTAATATT
Found at i:789453 original size:25 final size:26
Alignment explanation
Indices: 789403--789492 Score: 71
Period size: 25 Copynumber: 3.4 Consensus size: 26
789393 TCTAATATAA
*
789403 ATATATTT-AATTTTTTAATATTTTT
1 ATATATTTAAATTTTTTAATATATTT
789428 ATATATTTAAATTTTTTTAA-A-ATTT
1 ATATATTTAAA-TTTTTTAATATATTT
* * *
789453 ATAT-TTTATATTATATTTAGATATGTGTG
1 ATATATTTAAATT-T-TTTA-ATATAT-TT
789482 ATATATTTAAA
1 ATATATTTAAA
789493 AAAATAATGT
Statistics
Matches: 51, Mismatches: 5, Indels: 13
0.74 0.07 0.19
Matches are distributed among these distances:
23 2 0.04
24 6 0.12
25 19 0.37
26 4 0.08
27 9 0.18
28 1 0.02
29 5 0.10
30 5 0.10
ACGTcount: A:0.37, C:0.00, G:0.04, T:0.59
Consensus pattern (26 bp):
ATATATTTAAATTTTTTAATATATTT
Found at i:790845 original size:3 final size:3
Alignment explanation
Indices: 790837--790877 Score: 82
Period size: 3 Copynumber: 13.7 Consensus size: 3
790827 CCATGTTATC
790837 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
790878 CTTCTTCTTC
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 38 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
TTA
Found at i:790882 original size:3 final size:3
Alignment explanation
Indices: 790876--790901 Score: 52
Period size: 3 Copynumber: 8.7 Consensus size: 3
790866 ATTATTATTA
790876 TTC TTC TTC TTC TTC TTC TTC TTC TT
1 TTC TTC TTC TTC TTC TTC TTC TTC TT
790902 TGAAAGGGAG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 23 1.00
ACGTcount: A:0.00, C:0.31, G:0.00, T:0.69
Consensus pattern (3 bp):
TTC
Found at i:794920 original size:2 final size:2
Alignment explanation
Indices: 794913--794942 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
794903 TTAACGTTTT
794913 CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA
1 CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA
794943 TATATATATA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.50, G:0.00, T:0.00
Consensus pattern (2 bp):
CA
Found at i:795235 original size:22 final size:22
Alignment explanation
Indices: 795204--795252 Score: 71
Period size: 22 Copynumber: 2.2 Consensus size: 22
795194 TTTTATATAT
* *
795204 ATATATACACATAAACACACAC
1 ATATACACACACAAACACACAC
*
795226 ATATACACACACACACACACAC
1 ATATACACACACAAACACACAC
795248 ATATA
1 ATATA
795253 TATATATATA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
22 24 1.00
ACGTcount: A:0.53, C:0.31, G:0.00, T:0.16
Consensus pattern (22 bp):
ATATACACACACAAACACACAC
Found at i:795237 original size:14 final size:12
Alignment explanation
Indices: 795210--795248 Score: 51
Period size: 12 Copynumber: 3.2 Consensus size: 12
795200 ATATATATAT
795210 ACACATAAACAC
1 ACACATAAACAC
*
795222 ACACATATACAC
1 ACACATAAACAC
* *
795234 ACACACACACAC
1 ACACATAAACAC
795246 ACA
1 ACA
795249 TATATATATA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
12 24 1.00
ACGTcount: A:0.54, C:0.38, G:0.00, T:0.08
Consensus pattern (12 bp):
ACACATAAACAC
Found at i:796137 original size:3 final size:3
Alignment explanation
Indices: 796129--796157 Score: 58
Period size: 3 Copynumber: 9.7 Consensus size: 3
796119 TGTTTATTTA
796129 ATT ATT ATT ATT ATT ATT ATT ATT ATT AT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT AT
796158 AAAAATATAA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 26 1.00
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (3 bp):
ATT
Found at i:805465 original size:3 final size:3
Alignment explanation
Indices: 805457--805494 Score: 76
Period size: 3 Copynumber: 12.7 Consensus size: 3
805447 AATCATTAAC
805457 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TA
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TA
805495 CCTCATCTAA
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 35 1.00
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (3 bp):
TAT
Found at i:812083 original size:1 final size:1
Alignment explanation
Indices: 812077--812101 Score: 50
Period size: 1 Copynumber: 25.0 Consensus size: 1
812067 TGAGGTAGGG
812077 AAAAAAAAAAAAAAAAAAAAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAA
812102 CTCGACAAAG
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
1 24 1.00
ACGTcount: A:1.00, C:0.00, G:0.00, T:0.00
Consensus pattern (1 bp):
A
Found at i:818755 original size:2 final size:2
Alignment explanation
Indices: 818748--818773 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
818738 CCGCAGAGTG
818748 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
818774 GATCATAAAT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:819357 original size:3 final size:3
Alignment explanation
Indices: 819349--819394 Score: 92
Period size: 3 Copynumber: 15.3 Consensus size: 3
819339 TTTCATTAGG
819349 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T
819395 ATAAACTATT
Statistics
Matches: 43, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 43 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TTA
Found at i:820494 original size:17 final size:17
Alignment explanation
Indices: 820469--820522 Score: 56
Period size: 17 Copynumber: 3.1 Consensus size: 17
820459 TATATCATAT
820469 TTATATATTTTATATAAA
1 TTAT-TATTTTATATAAA
* *
820487 TTATTATTATATTTAAA
1 TTATTATTTTATATAAA
*
820504 ATATTATATTT-TATAAA
1 TTATTAT-TTTATATAAA
820521 TT
1 TT
820523 TAAAAACGTT
Statistics
Matches: 29, Mismatches: 6, Indels: 3
0.76 0.16 0.08
Matches are distributed among these distances:
17 23 0.79
18 6 0.21
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (17 bp):
TTATTATTTTATATAAA
Found at i:820598 original size:10 final size:10
Alignment explanation
Indices: 820565--820611 Score: 53
Period size: 10 Copynumber: 4.8 Consensus size: 10
820555 ATGACATATC
*
820565 ATATTTAATT
1 ATATTTTATT
*
820575 TTATTTATATT
1 ATATTT-TATT
820586 AT-TTTT-TT
1 ATATTTTATT
820594 ATATTTTATT
1 ATATTTTATT
820604 ATATTTTA
1 ATATTTTA
820612 ATCATTTTAT
Statistics
Matches: 31, Mismatches: 3, Indels: 6
0.77 0.08 0.15
Matches are distributed among these distances:
8 4 0.13
9 5 0.16
10 18 0.58
11 4 0.13
ACGTcount: A:0.30, C:0.00, G:0.00, T:0.70
Consensus pattern (10 bp):
ATATTTTATT
Found at i:820618 original size:19 final size:18
Alignment explanation
Indices: 820576--820622 Score: 58
Period size: 19 Copynumber: 2.5 Consensus size: 18
820566 TATTTAATTT
* *
820576 TATTTATATTATTTTTTTA
1 TATTT-TATTATATTTTAA
820595 TATTTTATTATATTTTAA
1 TATTTTATTATATTTTAA
820613 TCATTTTATT
1 T-ATTTTATT
820623 TCATCCTACT
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
18 12 0.48
19 13 0.52
ACGTcount: A:0.28, C:0.02, G:0.00, T:0.70
Consensus pattern (18 bp):
TATTTTATTATATTTTAA
Found at i:821438 original size:22 final size:21
Alignment explanation
Indices: 821396--821447 Score: 50
Period size: 22 Copynumber: 2.4 Consensus size: 21
821386 TTTAAAATTT
* *
821396 AATTTAATTAATTTATATAATT
1 AATTTAA-AAATTTATATAATA
* *
821418 ATTTTAAAAATTATATTTAATA
1 AATTTAAAAATT-TATATAATA
821440 AATTTAAA
1 AATTTAAA
821448 TTTTAACAGT
Statistics
Matches: 24, Mismatches: 5, Indels: 2
0.77 0.16 0.06
Matches are distributed among these distances:
21 4 0.17
22 20 0.83
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (21 bp):
AATTTAAAAATTTATATAATA
Found at i:823061 original size:45 final size:46
Alignment explanation
Indices: 822982--823071 Score: 130
Period size: 45 Copynumber: 2.0 Consensus size: 46
822972 CCAAATACAT
*
822982 AGAAAAATTTAGAAAAAATTAAATATATCCGTATTGACACTCACAC
1 AGAAAAATTTAGAAAAAAATAAATATATCCGTATTGACACTCACAC
* *
823028 AGAAAAATTTA-AAAAAAATGAATATA-CTTGTATTGACACTCACA
1 AGAAAAATTTAGAAAAAAATAAATATATC-CGTATTGACACTCACA
823072 ACCGAGTATG
Statistics
Matches: 40, Mismatches: 3, Indels: 3
0.87 0.07 0.07
Matches are distributed among these distances:
44 1 0.03
45 28 0.70
46 11 0.28
ACGTcount: A:0.51, C:0.13, G:0.09, T:0.27
Consensus pattern (46 bp):
AGAAAAATTTAGAAAAAAATAAATATATCCGTATTGACACTCACAC
Found at i:824873 original size:1 final size:1
Alignment explanation
Indices: 824867--824891 Score: 50
Period size: 1 Copynumber: 25.0 Consensus size: 1
824857 CATAAACACC
824867 AAAAAAAAAAAAAAAAAAAAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAA
824892 CGCCCCAACT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
1 24 1.00
ACGTcount: A:1.00, C:0.00, G:0.00, T:0.00
Consensus pattern (1 bp):
A
Found at i:827329 original size:24 final size:24
Alignment explanation
Indices: 827293--827372 Score: 71
Period size: 24 Copynumber: 3.5 Consensus size: 24
827283 TTATTATAAT
827293 TAAAATTTT-AAAATATAATTTAA
1 TAAAATTTTAAAAATATAATTTAA
* *
827316 TAAAATTTTAAAAATTTTATTTATA
1 TAAAATTTTAAAAATATAATTTA-A
* * *
827341 TACAA-TTTAATATTA-AATTTAA
1 TAAAATTTTAAAAATATAATTTAA
827363 T--AATTTTAAA
1 TAAAATTTTAAA
827373 TAAAAATTAT
Statistics
Matches: 46, Mismatches: 8, Indels: 8
0.74 0.13 0.13
Matches are distributed among these distances:
20 2 0.04
21 5 0.11
22 2 0.04
23 14 0.30
24 18 0.39
25 5 0.11
ACGTcount: A:0.51, C:0.01, G:0.00, T:0.47
Consensus pattern (24 bp):
TAAAATTTTAAAAATATAATTTAA
Found at i:828104 original size:22 final size:21
Alignment explanation
Indices: 828044--828115 Score: 67
Period size: 22 Copynumber: 3.3 Consensus size: 21
828034 TTTACACATA
828044 TATATTTT-TATATTTTTATAT
1 TATATTTTAT-TATTTTTATAT
** *
828065 TCATATCATCTTATTTTTTATAT
1 T-ATATTTTATTA-TTTTTATAT
828088 TATATTTTAATTATTTTTATA-
1 TATATTTT-ATTATTTTTATAT
828109 TATATTT
1 TATATTT
828116 AAAGTAATAT
Statistics
Matches: 42, Mismatches: 5, Indels: 8
0.76 0.09 0.15
Matches are distributed among these distances:
21 8 0.19
22 20 0.48
23 14 0.33
ACGTcount: A:0.29, C:0.04, G:0.00, T:0.67
Consensus pattern (21 bp):
TATATTTTATTATTTTTATAT
Found at i:828610 original size:12 final size:12
Alignment explanation
Indices: 828595--828624 Score: 51
Period size: 12 Copynumber: 2.5 Consensus size: 12
828585 AGATGCAAAG
828595 AAAAAAAAAGAA
1 AAAAAAAAAGAA
*
828607 AAAAGAAAAGAA
1 AAAAAAAAAGAA
828619 AAAAAA
1 AAAAAA
828625 TGGGAGAAAG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
12 16 1.00
ACGTcount: A:0.90, C:0.00, G:0.10, T:0.00
Consensus pattern (12 bp):
AAAAAAAAAGAA
Found at i:829014 original size:16 final size:17
Alignment explanation
Indices: 828983--829015 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
828973 ATAAATATTA
828983 TTTAATAAAAATTAATT
1 TTTAATAAAAATTAATT
*
829000 TTTATTAAAAA-TAATT
1 TTTAATAAAAATTAATT
829016 AAAAATATAA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 5 0.33
17 10 0.67
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (17 bp):
TTTAATAAAAATTAATT
Found at i:829168 original size:17 final size:18
Alignment explanation
Indices: 829148--829188 Score: 50
Period size: 17 Copynumber: 2.3 Consensus size: 18
829138 AACTATTATT
829148 TAATAAAATTTATT-TT-A
1 TAATAAAATTT-TTATTAA
*
829165 TAATTAAATTTTTATTAA
1 TAATAAAATTTTTATTAA
829183 TAATAA
1 TAATAA
829189 TTAAAATTTA
Statistics
Matches: 20, Mismatches: 2, Indels: 3
0.80 0.08 0.12
Matches are distributed among these distances:
16 2 0.10
17 12 0.60
18 6 0.30
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (18 bp):
TAATAAAATTTTTATTAA
Found at i:829912 original size:2 final size:2
Alignment explanation
Indices: 829899--829935 Score: 65
Period size: 2 Copynumber: 18.5 Consensus size: 2
829889 CATATCTAGC
*
829899 AT AT AT AA AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
829936 AAGAAAATAT
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
2 33 1.00
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (2 bp):
AT
Found at i:830053 original size:21 final size:20
Alignment explanation
Indices: 830016--830057 Score: 50
Period size: 21 Copynumber: 2.0 Consensus size: 20
830006 AATTATTAAT
*
830016 ATTATTAATATTTTTATGTTA
1 ATTATTAATATTATTAT-TTA
830037 ATTATTAAT-TATATTATTTA
1 ATTATTAATAT-TATTATTTA
830057 A
1 A
830058 AATAAATGTA
Statistics
Matches: 19, Mismatches: 1, Indels: 3
0.83 0.04 0.13
Matches are distributed among these distances:
20 5 0.26
21 14 0.74
ACGTcount: A:0.38, C:0.00, G:0.02, T:0.60
Consensus pattern (20 bp):
ATTATTAATATTATTATTTA
Found at i:830747 original size:22 final size:22
Alignment explanation
Indices: 830722--830772 Score: 59
Period size: 22 Copynumber: 2.3 Consensus size: 22
830712 CATGATTTAT
830722 AAATAAAAAATTATAAA-TATTA
1 AAATAAAAAATT-TAAATTATTA
**
830744 AAATTTAAAATTTAAATTATTA
1 AAATAAAAAATTTAAATTATTA
830766 AATATAA
1 AA-ATAA
830773 TTTTTTAAAA
Statistics
Matches: 23, Mismatches: 4, Indels: 3
0.77 0.13 0.10
Matches are distributed among these distances:
21 4 0.17
22 17 0.74
23 2 0.09
ACGTcount: A:0.63, C:0.00, G:0.00, T:0.37
Consensus pattern (22 bp):
AAATAAAAAATTTAAATTATTA
Found at i:830847 original size:22 final size:22
Alignment explanation
Indices: 830822--830865 Score: 63
Period size: 22 Copynumber: 2.0 Consensus size: 22
830812 ATTTTATATA
*
830822 TTAATAATAAAATTTAA-AAAAT
1 TTAAAAATAAAA-TTAATAAAAT
830844 TTAAAAATAAAATTAATAAAAT
1 TTAAAAATAAAATTAATAAAAT
830866 GATATATATC
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
21 4 0.20
22 16 0.80
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (22 bp):
TTAAAAATAAAATTAATAAAAT
Found at i:831256 original size:12 final size:12
Alignment explanation
Indices: 831239--831280 Score: 56
Period size: 12 Copynumber: 3.8 Consensus size: 12
831229 TAATAAAATT
831239 ATATATATTTTA
1 ATATATATTTTA
831251 ATATATATTTTA
1 ATATATATTTTA
831263 A-A-A-ATTTTA
1 ATATATATTTTA
831272 ATAT-TATTT
1 ATATATATTT
831281 ATAAAATTAA
Statistics
Matches: 27, Mismatches: 0, Indels: 7
0.79 0.00 0.21
Matches are distributed among these distances:
9 7 0.26
10 2 0.07
11 5 0.19
12 13 0.48
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (12 bp):
ATATATATTTTA
Found at i:831288 original size:20 final size:21
Alignment explanation
Indices: 831245--831286 Score: 68
Period size: 21 Copynumber: 2.0 Consensus size: 21
831235 AATTATATAT
831245 ATTTTAATATATATTTTAAAA
1 ATTTTAATATATATTTTAAAA
831266 ATTTTAATAT-TATTTATAAAA
1 ATTTTAATATATATTT-TAAAA
831287 TTAAAAATTG
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
20 5 0.25
21 15 0.75
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (21 bp):
ATTTTAATATATATTTTAAAA
Found at i:832091 original size:21 final size:17
Alignment explanation
Indices: 832080--832129 Score: 57
Period size: 20 Copynumber: 2.8 Consensus size: 17
832070 ATATATCTAT
832080 TTAT-ATTTAAAATATA
1 TTATAATTTAAAATATA
832096 TTATAATTTAAAATAAAATA
1 TTATAATTTAAAAT---ATA
*
832116 TTATAAATTAAAAT
1 TTATAATTTAAAAT
832130 TAAAATTTTA
Statistics
Matches: 29, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
16 4 0.14
17 9 0.31
20 16 0.55
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (17 bp):
TTATAATTTAAAATATA
Found at i:832118 original size:20 final size:19
Alignment explanation
Indices: 832093--832164 Score: 69
Period size: 20 Copynumber: 3.8 Consensus size: 19
832083 TATTTAAAAT
832093 ATATTATAATTTAAAATAAA
1 ATATTA-AATTTAAAATAAA
*
832113 ATATTATAAATTAAAATTAAA
1 ATATTA-AATTTAAAA-TAAA
*
832134 ATTTTAAATTT---ATAAA
1 ATATTAAATTTAAAATAAA
*
832150 ATATTAATTTTAAAA
1 ATATTAAATTTAAAA
832165 AATAATTATA
Statistics
Matches: 43, Mismatches: 5, Indels: 9
0.75 0.09 0.16
Matches are distributed among these distances:
16 13 0.30
17 1 0.02
19 1 0.02
20 19 0.44
21 9 0.21
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (19 bp):
ATATTAAATTTAAAATAAA
Found at i:832151 original size:16 final size:16
Alignment explanation
Indices: 832130--832168 Score: 51
Period size: 16 Copynumber: 2.4 Consensus size: 16
832120 AAATTAAAAT
*
832130 TAAAATTTTAAATTTA
1 TAAAATATTAAATTTA
*
832146 TAAAATATTAATTTTA
1 TAAAATATTAAATTTA
*
832162 AAAAATA
1 TAAAATA
832169 ATTATATAAA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
16 20 1.00
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (16 bp):
TAAAATATTAAATTTA
Found at i:832183 original size:13 final size:13
Alignment explanation
Indices: 832143--832185 Score: 50
Period size: 13 Copynumber: 3.2 Consensus size: 13
832133 AATTTTAAAT
832143 TTATAAAATATTAA
1 TTATAAAA-ATTAA
* *
832157 TTTTAAAAAATAA
1 TTATAAAAATTAA
*
832170 TTATATAAATTAA
1 TTATAAAAATTAA
832183 TTA
1 TTA
832186 AATTTTAATT
Statistics
Matches: 24, Mismatches: 5, Indels: 1
0.80 0.17 0.03
Matches are distributed among these distances:
13 17 0.71
14 7 0.29
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (13 bp):
TTATAAAAATTAA
Found at i:832602 original size:20 final size:19
Alignment explanation
Indices: 832573--832621 Score: 64
Period size: 20 Copynumber: 2.6 Consensus size: 19
832563 TCAGGTTTGA
*
832573 AATATCAATTATATAAATAT
1 AATATAAATTAT-TAAATAT
832593 AATATAAATTATTAAATAT
1 AATATAAATTATTAAATAT
*
832612 ATTA-AAATTA
1 AATATAAATTA
832622 AAAAAAATTA
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
18 6 0.22
19 10 0.37
20 11 0.41
ACGTcount: A:0.57, C:0.02, G:0.00, T:0.41
Consensus pattern (19 bp):
AATATAAATTATTAAATAT
Found at i:833479 original size:28 final size:28
Alignment explanation
Indices: 833457--833518 Score: 79
Period size: 29 Copynumber: 2.1 Consensus size: 28
833447 ATGTATTATA
833457 TTTTATTAACATTTTTTAATGTAATGTAT
1 TTTTATTAA-ATTTTTTAATGTAATGTAT
* * *
833486 TTTTATTGAATTTTTTTAATATAGTGTAT
1 TTTTATT-AAATTTTTTAATGTAATGTAT
833515 TTTT
1 TTTT
833519 TACTATTTAT
Statistics
Matches: 29, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
29 27 0.93
30 2 0.07
ACGTcount: A:0.27, C:0.02, G:0.08, T:0.63
Consensus pattern (28 bp):
TTTTATTAAATTTTTTAATGTAATGTAT
Found at i:833490 original size:16 final size:16
Alignment explanation
Indices: 833469--833518 Score: 52
Period size: 16 Copynumber: 3.3 Consensus size: 16
833459 TTATTAACAT
833469 TTTTTAATGTAATGTA
1 TTTTTAATGTAATGTA
*
833485 TTTTTATTG-AAT-T-
1 TTTTTAATGTAATGTA
* *
833498 TTTTTAATATAGTGTA
1 TTTTTAATGTAATGTA
833514 TTTTT
1 TTTTT
833519 TACTATTTAT
Statistics
Matches: 27, Mismatches: 4, Indels: 6
0.73 0.11 0.16
Matches are distributed among these distances:
13 7 0.26
14 3 0.11
15 4 0.15
16 13 0.48
ACGTcount: A:0.26, C:0.00, G:0.10, T:0.64
Consensus pattern (16 bp):
TTTTTAATGTAATGTA
Found at i:834267 original size:20 final size:22
Alignment explanation
Indices: 834242--834284 Score: 63
Period size: 23 Copynumber: 2.0 Consensus size: 22
834232 CATATATAAA
834242 TATTAA-TATAAA-AATAATTT
1 TATTAATTATAAATAATAATTT
834262 TATTAATTTATAAATAATAATTT
1 TATTAA-TTATAAATAATAATTT
834285 AAAATTTTTA
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
20 6 0.30
22 6 0.30
23 8 0.40
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (22 bp):
TATTAATTATAAATAATAATTT
Found at i:835256 original size:20 final size:21
Alignment explanation
Indices: 835231--835271 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
835221 TTTGAAATTA
835231 TAACAA-ATAAAAAAATTTAT
1 TAACAATATAAAAAAATTTAT
* *
835251 TAACAATGTTAAAAAATTTAT
1 TAACAATATAAAAAAATTTAT
835272 ATAAATATCG
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
20 6 0.33
21 12 0.67
ACGTcount: A:0.59, C:0.05, G:0.02, T:0.34
Consensus pattern (21 bp):
TAACAATATAAAAAAATTTAT
Found at i:837071 original size:2 final size:2
Alignment explanation
Indices: 837066--837090 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
837056 AAAAAAACCT
837066 AG AG AG AG AG AG AG AG AG AG AG AG A
1 AG AG AG AG AG AG AG AG AG AG AG AG A
837091 TCCATAGGCT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.52, C:0.00, G:0.48, T:0.00
Consensus pattern (2 bp):
AG
Found at i:845173 original size:20 final size:22
Alignment explanation
Indices: 845150--845189 Score: 66
Period size: 22 Copynumber: 1.9 Consensus size: 22
845140 AAATTTAACA
845150 TTAAAT-T-TATTTTTTTATTT
1 TTAAATATATATTTTTTTATTT
845170 TTAAATATATATTTTTTTAT
1 TTAAATATATATTTTTTTAT
845190 AAAAAAATAA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
20 6 0.33
21 1 0.06
22 11 0.61
ACGTcount: A:0.30, C:0.00, G:0.00, T:0.70
Consensus pattern (22 bp):
TTAAATATATATTTTTTTATTT
Found at i:848044 original size:2 final size:2
Alignment explanation
Indices: 848037--848062 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
848027 GCATAAAGCA
848037 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
848063 CTTTTAGAAA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:848621 original size:17 final size:17
Alignment explanation
Indices: 848553--848668 Score: 69
Period size: 16 Copynumber: 6.6 Consensus size: 17
848543 AATTTAAAAT
848553 TTAAATATTTAAATTTATA
1 TTAAATATTT--ATTTATA
848572 TTAAAAATATTATTATTTA-A
1 TT--AAATA-T-TTATTTATA
* ** *
848592 TCAAATACATATTTTTA
1 TTAAATATTTATTTATA
848609 TTAAATATTTA-TTATA
1 TTAAATATTTATTTATA
*
848625 TTTAATATTTATTTACTA
1 TTAAATATTTATTTA-TA
* *
848643 TT-AACA-TTATATATA
1 TTAAATATTTATTTATA
*
848658 TTTAATATTTA
1 TTAAATATTTA
848669 AATTTTTTAT
Statistics
Matches: 76, Mismatches: 12, Indels: 20
0.70 0.11 0.19
Matches are distributed among these distances:
15 4 0.05
16 28 0.37
17 18 0.24
18 9 0.12
19 2 0.03
20 2 0.03
21 10 0.13
22 1 0.01
23 2 0.03
ACGTcount: A:0.43, C:0.03, G:0.00, T:0.53
Consensus pattern (17 bp):
TTAAATATTTATTTATA
Found at i:849457 original size:27 final size:27
Alignment explanation
Indices: 849427--849479 Score: 70
Period size: 27 Copynumber: 2.0 Consensus size: 27
849417 CAGACTTGAA
*
849427 TTTAATATATTGTCAGTATAATTTTAT
1 TTTAATATATTGTCAGTAGAATTTTAT
* * *
849454 TTTATTATATTTTCATTAGAATTTTA
1 TTTAATATATTGTCAGTAGAATTTTA
849480 AATAGAAAAA
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 22 1.00
ACGTcount: A:0.32, C:0.04, G:0.06, T:0.58
Consensus pattern (27 bp):
TTTAATATATTGTCAGTAGAATTTTAT
Found at i:849642 original size:5 final size:5
Alignment explanation
Indices: 849634--849679 Score: 51
Period size: 5 Copynumber: 9.2 Consensus size: 5
849624 TATTTATTTA
*
849634 TAAAT TAAAT TAAAT TAAAT TATGATT TAAA- -AAAT TAAAT TAAAT T
1 TAAAT TAAAT TAAAT TAAAT TA--AAT TAAAT TAAAT TAAAT TAAAT T
849680 TTAATTTTAT
Statistics
Matches: 35, Mismatches: 2, Indels: 8
0.78 0.04 0.18
Matches are distributed among these distances:
3 3 0.09
5 28 0.80
7 4 0.11
ACGTcount: A:0.57, C:0.00, G:0.02, T:0.41
Consensus pattern (5 bp):
TAAAT
Found at i:849683 original size:20 final size:20
Alignment explanation
Indices: 849631--849680 Score: 57
Period size: 20 Copynumber: 2.5 Consensus size: 20
849621 TTATATTTAT
*
849631 TTATAAATTAAATTAAATTAAA
1 TTATAATTTAAA--AAATTAAA
*
849653 TTATGATTTAAAAAATTAAA
1 TTATAATTTAAAAAATTAAA
849673 TTA-AATTT
1 TTATAATTT
849681 TAATTTTATC
Statistics
Matches: 25, Mismatches: 3, Indels: 3
0.81 0.10 0.10
Matches are distributed among these distances:
19 4 0.16
20 11 0.44
22 10 0.40
ACGTcount: A:0.54, C:0.00, G:0.02, T:0.44
Consensus pattern (20 bp):
TTATAATTTAAAAAATTAAA
Found at i:849779 original size:22 final size:22
Alignment explanation
Indices: 849739--849780 Score: 59
Period size: 22 Copynumber: 1.9 Consensus size: 22
849729 ATTTAAAAAT
*
849739 TATTTTTATTTTAATATTTATA
1 TATTTTTATATTAATATTTATA
849761 TATTTTTATAATTAA-ATTTA
1 TATTTTTAT-ATTAATATTTA
849781 ATTAAAAATA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
22 14 0.78
23 4 0.22
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (22 bp):
TATTTTTATATTAATATTTATA
Found at i:849817 original size:19 final size:18
Alignment explanation
Indices: 849775--849818 Score: 52
Period size: 19 Copynumber: 2.4 Consensus size: 18
849765 TTTATAATTA
*
849775 AATTTAATTAAAAATATT
1 AATTTAATTAAAAATAAT
* *
849793 ATTTTAATTAATTAATAAT
1 AATTTAATTAA-AAATAAT
849812 AATTTAA
1 AATTTAA
849819 AGAAGATCAA
Statistics
Matches: 21, Mismatches: 4, Indels: 1
0.81 0.15 0.04
Matches are distributed among these distances:
18 10 0.48
19 11 0.52
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (18 bp):
AATTTAATTAAAAATAAT
Found at i:849948 original size:17 final size:17
Alignment explanation
Indices: 849922--849960 Score: 51
Period size: 17 Copynumber: 2.3 Consensus size: 17
849912 AAATTATAAT
* * *
849922 ATATATATATATAATTA
1 ATATAGATATAAAACTA
849939 ATATAGATATAAAACTA
1 ATATAGATATAAAACTA
849956 ATATA
1 ATATA
849961 TATTATTTCT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
17 19 1.00
ACGTcount: A:0.56, C:0.03, G:0.03, T:0.38
Consensus pattern (17 bp):
ATATAGATATAAAACTA
Found at i:850617 original size:16 final size:16
Alignment explanation
Indices: 850579--850620 Score: 52
Period size: 16 Copynumber: 2.6 Consensus size: 16
850569 AGATTACTAC
850579 TATT-TTTTAATTTAT
1 TATTATTTTAATTTAT
850594 TGATTATTTTATATTT-T
1 T-ATTATTTTA-ATTTAT
850611 TATTATTTTA
1 TATTATTTTA
850621 CAATATTAAA
Statistics
Matches: 24, Mismatches: 0, Indels: 5
0.83 0.00 0.17
Matches are distributed among these distances:
15 1 0.04
16 12 0.50
17 7 0.29
18 4 0.17
ACGTcount: A:0.26, C:0.00, G:0.02, T:0.71
Consensus pattern (16 bp):
TATTATTTTAATTTAT
Found at i:851597 original size:20 final size:20
Alignment explanation
Indices: 851555--851599 Score: 56
Period size: 20 Copynumber: 2.2 Consensus size: 20
851545 TATTTTAAAA
* *
851555 ATTTTAAAGATAAAAAATTT
1 ATTTTAAACATAAAAAATAT
851575 ATTTTAAACA-AAAAAATAAT
1 ATTTTAAACATAAAAAAT-AT
851595 ATTTT
1 ATTTT
851600 TATTTTTAAA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
19 7 0.32
20 15 0.68
ACGTcount: A:0.56, C:0.02, G:0.02, T:0.40
Consensus pattern (20 bp):
ATTTTAAACATAAAAAATAT
Found at i:853075 original size:20 final size:20
Alignment explanation
Indices: 853047--853091 Score: 72
Period size: 20 Copynumber: 2.2 Consensus size: 20
853037 TCAAAAGAAT
*
853047 CAAAACCCACAAACAAAAAG
1 CAAACCCCACAAACAAAAAG
*
853067 CAAACCCCACAAACAAAATG
1 CAAACCCCACAAACAAAAAG
853087 CAAAC
1 CAAAC
853092 TGCAAAATGA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
20 23 1.00
ACGTcount: A:0.60, C:0.33, G:0.04, T:0.02
Consensus pattern (20 bp):
CAAACCCCACAAACAAAAAG
Found at i:856321 original size:37 final size:36
Alignment explanation
Indices: 856272--856345 Score: 96
Period size: 37 Copynumber: 2.0 Consensus size: 36
856262 TTTATTTGAA
* *
856272 TTTAATTATAATA-ATATATAAATATTAATATAATTT
1 TTTAATTATAATATAT-TATAAATAGTAAAATAATTT
*
856308 TTTAGATTTTAATATATTATAAATAGTAAAATAATTT
1 TTTA-ATTATAATATATTATAAATAGTAAAATAATTT
856345 T
1 T
856346 AGATTGAGAT
Statistics
Matches: 33, Mismatches: 3, Indels: 3
0.85 0.08 0.08
Matches are distributed among these distances:
36 4 0.12
37 27 0.82
38 2 0.06
ACGTcount: A:0.47, C:0.00, G:0.03, T:0.50
Consensus pattern (36 bp):
TTTAATTATAATATATTATAAATAGTAAAATAATTT
Found at i:856549 original size:2 final size:2
Alignment explanation
Indices: 856542--856566 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
856532 CTAAAAATTC
856542 TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA T
856567 GCAGATGCGT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:856934 original size:2 final size:2
Alignment explanation
Indices: 856927--856951 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
856917 GATAATATCT
856927 TC TC TC TC TC TC TC TC TC TC TC TC T
1 TC TC TC TC TC TC TC TC TC TC TC TC T
856952 AAACTTTTTT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.00, C:0.48, G:0.00, T:0.52
Consensus pattern (2 bp):
TC
Found at i:862686 original size:21 final size:21
Alignment explanation
Indices: 862651--862716 Score: 70
Period size: 20 Copynumber: 3.3 Consensus size: 21
862641 TGAAAATGTG
862651 ATAT-AATATTA-AAAAAATA
1 ATATAAATATTATAAAAAATA
862670 ATATAAATATTAT-AAAAATA
1 ATATAAATATTATAAAAAATA
* *
862690 A-ATAAATA-TATTAAAAATTT
1 ATATAAATATTA-TAAAAAATA
862710 ATATAAA
1 ATATAAA
862717 ATAAATTATT
Statistics
Matches: 40, Mismatches: 2, Indels: 8
0.80 0.04 0.16
Matches are distributed among these distances:
18 2 0.05
19 12 0.30
20 21 0.52
21 5 0.12
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (21 bp):
ATATAAATATTATAAAAAATA
Found at i:862706 original size:20 final size:20
Alignment explanation
Indices: 862651--862698 Score: 73
Period size: 20 Copynumber: 2.5 Consensus size: 20
862641 TGAAAATGTG
862651 ATAT-AATATTAAAAAAATA
1 ATATAAATATTAAAAAAATA
*
862670 ATATAAATATTATAAAAATA
1 ATATAAATATTAAAAAAATA
862690 A-ATAAATAT
1 ATATAAATAT
862699 ATTAAAAATT
Statistics
Matches: 27, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
19 12 0.44
20 15 0.56
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (20 bp):
ATATAAATATTAAAAAAATA
Found at i:862707 original size:19 final size:20
Alignment explanation
Indices: 862651--862707 Score: 75
Period size: 19 Copynumber: 3.0 Consensus size: 20
862641 TGAAAATGTG
*
862651 ATAT-AATATTAAAAAAATA
1 ATATAAATATTATAAAAATA
862670 ATATAAATATTATAAAAATA
1 ATATAAATATTATAAAAATA
862690 A-ATAAATA-TATTAAAAAT
1 ATATAAATATTA-TAAAAAT
862708 TTATATAAAA
Statistics
Matches: 35, Mismatches: 1, Indels: 4
0.88 0.03 0.10
Matches are distributed among these distances:
18 2 0.06
19 18 0.51
20 15 0.43
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (20 bp):
ATATAAATATTATAAAAATA
Found at i:862735 original size:33 final size:30
Alignment explanation
Indices: 862674--862744 Score: 90
Period size: 30 Copynumber: 2.2 Consensus size: 30
862664 AAAATAATAT
862674 AAATATTATAAAAATAAATAAATATATTAA
1 AAATATTATAAAAATAAATAAATATATTAA
862704 AAAT-TTATATAAAATAAATTATTAATATATTAA
1 AAATATTATA-AAAATAAA-TA--AATATATTAA
862737 AATATATT
1 AA-ATATT
862745 TTTATATATA
Statistics
Matches: 35, Mismatches: 0, Indels: 7
0.83 0.00 0.17
Matches are distributed among these distances:
29 5 0.14
30 12 0.34
31 2 0.06
33 12 0.34
34 2 0.06
35 2 0.06
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (30 bp):
AAATATTATAAAAATAAATAAATATATTAA
Done.