Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold2230
Parameters: 2 7 7 80 10 50 1000
Length:  35289

Tables:   1   

This is table  1  of  1  ( 34 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4749--4952
76
2.6
78
80
5
218
28
16
29
25
1.96
4904--4975
28
2.6
28
88
0
99
23
19
34
22
1.96
4964--5133
52
3.3
50
79
11
182
32
12
24
29
1.93
5107--5188
27
3.0
28
82
10
98
26
21
29
21
1.99
7607--7632
13
2.0
13
100
0
52
38
15
15
30
1.88
7586--7652
33
2.0
33
88
0
98
43
16
14
25
1.86
7672--7739
19
3.9
18
76
23
83
38
14
11
35
1.83
7694--7718
13
1.9
13
100
0
50
32
16
16
36
1.90
7675--7737
32
2.0
32
96
0
117
36
15
12
34
1.86
7795--7851
21
2.7
21
97
0
105
36
19
10
33
1.86
10910--10951
16
2.6
17
81
11
52
45
9
0
45
1.36
10917--10953
16
2.3
16
90
0
56
45
8
0
45
1.32
10926--10957
16
2.0
16
100
0
64
43
6
0
50
1.27
10985--11021
18
2.1
18
90
5
58
37
13
5
43
1.67
13299--13352
25
2.2
25
100
0
108
27
27
3
40
1.73
14911--14971
13
5.1
13
74
25
71
39
16
13
31
1.87
14911--14992
34
2.4
34
97
0
155
40
17
10
31
1.84
15103--15128
13
2.0
13
100
0
52
30
15
15
38
1.88
15083--15148
34
2.0
33
87
3
96
25
15
13
45
1.83
17593--17668
27
2.8
28
89
2
109
23
34
21
21
1.97
17651--17875
51
4.3
52
83
4
249
27
26
14
32
1.94
17864--18094
107
2.2
107
98
1
446
22
28
16
33
1.95
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
17954--18010
28
2.0
28
89
0
87
22
28
21
28
1.99
23213--23244
15
2.1
15
94
0
55
37
0
12
50
1.41
25996--26025
2
15.0
2
100
0
60
50
0
0
50
1.00
28619--28663
16
2.7
17
82
6
65
53
0
0
46
1.00
28619--28654
8
4.4
8
89
6
54
55
0
0
44
0.99
28591--28663
33
2.1
35
82
9
89
56
0
0
43
0.99
29229--29272
15
2.8
17
83
13
58
40
0
0
59
0.98
29229--29273
10
4.3
11
83
13
51
42
0
0
57
0.98
29539--29601
19
3.3
19
75
12
58
47
1
1
49
1.20
29761--29801
22
1.9
21
85
5
55
43
0
0
56
0.99
30213--30395
34
5.4
34
88
2
251
25
0
33
40
1.56
35098--35266
35
4.9
34
79
9
175
19
3
35
41
1.69

Tables:   1

The End!