genome.fa.s2231.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold2231
Parameters: 2 7 7 80 10 50 1000
Length:  69695

Tables:   1   

This is table  1  of  1  ( 53 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3156--3195	20	2.0	21	90	5	64	10	7	2	80	1.00
9010--9044	18	2.0	18	88	5	54	34	14	5	45	1.68
9034--9083	20	2.6	19	81	6	55	46	16	12	26	1.81
11138--11162	11	2.3	11	100	0	50	24	0	44	32	1.54
11653--11717	19	3.7	19	71	23	70	40	10	10	38	1.75
11653--11724	32	2.2	32	92	0	108	37	11	11	40	1.76
18411--18524	48	2.4	48	90	0	183	28	34	7	29	1.85
20162--20238	20	3.8	20	83	6	93	31	14	12	41	1.83
33052--33090	13	3.0	13	92	0	69	35	15	15	33	1.89
35246--35270	13	1.9	13	100	0	50	36	16	16	32	1.90
35933--35982	25	2.0	25	92	0	82	34	26	2	38	1.68
36241--36296	24	2.3	25	84	3	78	41	17	10	30	1.84
41476--41589	50	2.3	50	93	0	192	45	9	15	28	1.78
42530--43151	28	22.0	28	80	6	603	26	16	27	29	1.97
43160--43247	14	6.6	14	75	10	67	35	14	12	37	1.84
44365--44666	79	3.8	79	82	4	360	34	13	23	27	1.93
44377--44666	157	1.8	157	83	5	381	35	12	23	27	1.91
45014--45038	13	1.9	13	100	0	50	32	16	16	36	1.90
45047--45122	32	2.4	32	97	0	143	31	22	21	25	1.98
48377--48419	21	2.0	21	100	0	86	27	23	20	27	1.99
52076--52127	11	4.7	11	88	9	79	86	13	0	0	0.57
52089--52126	19	1.9	19	94	5	67	86	13	0	0	0.56
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52074--52107	13	2.5	14	95	4	61	88	11	0	0	0.52
52364--52416	15	3.3	16	86	7	81	84	7	7	0	0.76
52366--52422	23	2.4	24	82	5	71	84	7	8	0	0.79
52366--52423	15	3.7	15	84	13	73	84	6	8	0	0.78
52460--52498	19	2.1	19	90	0	60	84	10	2	2	0.81
52473--52500	11	2.5	11	100	0	56	92	7	0	0	0.37
53451--53532	30	2.7	31	88	1	112	25	28	18	28	1.98
53578--53690	34	3.5	34	72	14	112	23	30	12	33	1.91
53509--53691	62	3.0	62	92	0	296	22	32	13	31	1.92
53446--53662	28	7.2	28	72	15	112	22	29	14	33	1.93
53701--53846	37	4.2	35	82	11	176	19	32	13	34	1.90
53693--54013	69	4.3	70	81	14	383	19	33	12	35	1.89
53875--54044	35	4.9	33	86	11	225	20	31	12	35	1.90
53857--54013	72	2.2	70	95	2	278	18	33	12	35	1.89
53569--54005	159	2.8	157	85	6	601	21	32	12	34	1.90
53875--54064	105	1.8	104	86	7	278	21	33	11	33	1.89
54049--54118	33	2.1	35	94	5	126	25	37	17	20	1.94
54118--54827	49	14.7	49	84	5	919	24	26	17	30	1.97
54118--54890	92	7.9	98	89	4	973	25	26	17	31	1.97
54448--54879	49	8.6	53	81	6	288	24	26	16	31	1.97
55760--55826	33	2.0	33	85	0	89	34	10	13	41	1.79
55869--55893	13	1.9	13	100	0	50	32	16	16	36	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55902--56022	52	2.3	52	97	0	224	34	18	18	28	1.94
58466--59751	643	2.0	643	93	0	2209	29	23	19	27	1.98
59813--59927	51	2.3	51	87	0	167	34	12	22	30	1.91
59751--59988	130	1.8	130	84	8	324	37	12	22	27	1.90
62323--62471	50	3.0	49	78	6	158	42	13	14	28	1.84
63091--64027	61	15.4	61	86	1	1166	29	17	25	26	1.98
65002--65031	9	3.4	9	90	9	53	0	16	0	83	0.65
64994--65031	17	2.1	19	90	9	62	0	18	0	81	0.69
65565--65773	108	1.9	108	95	0	373	24	21	16	37	1.94

Tables:   1

The End!