genome.fa.s2233.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold2233
Parameters: 2 7 7 80 10 50 1000
Length:  38860

Tables:   1   

This is table  1  of  1  ( 38 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
117--186	20	3.6	20	72	11	65	30	21	14	34	1.93
108--186	41	2.0	41	87	7	119	27	20	12	39	1.89
4822--4852	15	2.1	15	93	0	53	48	16	22	12	1.80
6867--6944	20	3.6	21	73	15	70	25	12	16	44	1.83
6931--6969	13	3.0	13	96	0	69	30	17	15	35	1.91
8757--8826	34	2.1	34	100	0	140	31	2	25	40	1.70
9446--9518	20	3.6	20	81	3	101	35	13	19	31	1.91
9464--9539	21	3.7	21	80	3	100	42	11	17	28	1.84
9446--9539	41	2.3	41	98	0	179	39	12	18	29	1.88
9578--9603	13	2.0	13	100	0	52	38	15	15	30	1.88
11439--11507	32	2.2	32	97	0	129	36	18	11	33	1.87
11447--11507	19	3.5	19	70	25	71	36	18	11	34	1.86
11569--11607	21	1.9	20	94	5	69	35	12	15	35	1.86
13701--13765	19	3.8	18	75	24	77	32	12	16	38	1.86
13722--13746	13	1.9	13	100	0	50	36	16	16	32	1.90
13703--13771	32	2.2	32	97	0	129	33	11	17	37	1.86
13818--13842	13	1.9	13	100	0	50	32	16	16	36	1.90
16022--16075	27	2.1	26	83	10	67	22	38	18	20	1.93
17646--17687	12	3.7	12	76	23	54	54	2	4	38	1.34
17645--17689	22	2.0	22	100	0	90	55	4	4	35	1.40
26513--27228	166	4.3	163	82	4	751	51	8	10	29	1.64
28041--28184	42	3.4	42	81	3	173	16	28	18	36	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
28695--28762	19	3.9	16	81	18	59	63	0	0	36	0.95
28696--28768	15	4.7	16	75	16	64	63	0	0	36	0.95
28698--28769	13	5.6	13	70	23	55	63	0	0	36	0.94
28697--28768	32	2.2	32	85	9	92	63	0	0	36	0.94
28698--28762	18	3.6	18	91	2	103	64	0	0	35	0.94
29293--29350	30	1.9	30	89	0	89	43	34	17	5	1.71
29293--29350	15	3.9	15	77	4	55	43	34	17	5	1.71
29353--29382	3	10.0	3	100	0	60	66	33	0	0	0.92
35321--35445	20	5.7	20	68	18	88	31	16	12	40	1.86
38324--38382	9	6.8	9	83	13	70	6	5	1	86	0.76
38324--38373	17	3.0	17	88	5	75	8	4	0	88	0.64
38325--38381	25	2.2	25	87	3	78	7	5	1	85	0.78
38341--38398	12	4.7	12	80	4	62	6	5	5	82	0.93
38333--38384	25	2.1	25	92	0	86	5	3	1	88	0.68
38323--38372	1	50.0	1	83	0	55	6	4	0	90	0.57
38343--38398	25	2.2	25	83	0	67	7	5	5	82	0.96

Tables:   1

The End!