Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold2234
Parameters: 2 7 7 80 10 50 1000
Length:  77305

Tables:   1   

This is table  1  of  1  ( 33 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
11557--11589
17
1.9
17
100
0
66
27
12
0
60
1.32
11657--11713
2
28.5
2
96
0
105
49
1
0
49
1.11
13027--13184
81
2.0
81
97
0
298
40
6
17
34
1.77
13363--13402
2
20.0
2
100
0
80
50
0
0
50
1.00
13701--13759
6
10.0
6
82
10
59
16
0
67
15
1.23
14414--14452
20
1.9
21
89
5
62
48
0
0
51
1.00
14410--14465
25
2.2
26
84
9
71
51
0
0
48
1.00
17401--17496
48
2.0
48
85
4
131
38
12
10
38
1.78
17521--17605
26
3.4
26
70
18
72
41
1
3
54
1.25
21942--21970
2
14.5
2
100
0
58
48
0
0
51
1.00
22242--22278
2
18.5
2
100
0
74
48
0
0
51
1.00
24065--24091
2
13.5
2
100
0
54
48
0
0
51
1.00
25699--26298
298
2.0
298
97
0
1137
30
18
16
34
1.93
29727--29763
18
2.0
19
89
5
58
43
13
13
29
1.82
34319--34397
40
2.0
39
83
14
99
45
0
0
54
0.99
34531--34556
2
13.0
2
100
0
52
50
0
0
50
1.00
38975--39017
2
21.5
2
95
0
77
48
2
0
48
1.14
39626--39667
19
2.2
19
95
0
75
52
0
0
47
1.00
40452--40487
2
18.0
2
100
0
72
50
0
0
50
1.00
44017--44086
28
2.4
29
81
6
81
37
22
4
35
1.74
43996--44086
29
3.2
28
76
9
94
37
24
5
32
1.78
45207--45310
35
3.0
35
79
18
103
51
0
0
47
1.07
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
46877--46918
21
2.1
21
86
8
61
16
4
2
76
1.07
48202--48244
21
2.0
21
82
8
52
65
0
2
32
1.06
51883--51916
17
2.0
17
88
0
50
44
2
0
52
1.16
52078--52109
16
2.0
16
100
0
64
12
37
0
50
1.41
58220--58299
40
2.0
40
97
0
151
26
17
3
52
1.61
62234--62259
2
13.0
2
100
0
52
50
0
0
50
1.00
64127--64156
2
15.0
2
100
0
60
50
0
0
50
1.00
70095--70302
103
2.0
103
98
0
398
35
12
8
44
1.72
73092--74739
547
3.0
547
97
0
3111
31
24
14
29
1.95
76176--76217
19
2.3
19
88
8
61
2
7
4
85
0.80
76476--76519
20
2.1
21
83
4
54
47
0
2
50
1.13

Tables:   1

The End!