Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold2235
Parameters: 2 7 7 80 10 50 1000
Length:  26472

Tables:   1   

This is table  1  of  1  ( 27 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3326--3403
20
3.7
20
73
18
68
28
12
15
43
1.83
3392--3429
13
2.9
13
96
0
67
34
18
15
31
1.92
3545--3589
21
2.2
20
84
11
56
31
20
4
44
1.71
5995--6020
13
2.0
13
100
0
52
38
15
15
30
1.88
6074--6113
19
2.0
20
95
4
73
42
15
10
32
1.79
6783--6840
21
2.8
21
97
0
107
32
10
18
37
1.85
6781--6859
21
3.8
21
79
5
70
35
15
16
32
1.90
6897--6959
32
2.0
32
87
0
90
38
11
12
38
1.79
6982--7048
34
2.0
33
88
2
98
26
16
11
44
1.82
7553--7585
12
2.9
12
86
13
52
75
24
0
0
0.80
7889--7956
19
3.9
19
78
21
85
35
11
14
38
1.83
7891--7953
32
2.0
32
96
0
117
34
12
15
36
1.86
7910--7934
13
1.9
13
100
0
50
36
16
16
32
1.90
7996--8021
13
2.0
13
100
0
52
30
15
15
38
1.88
7976--8042
33
2.0
33
88
0
98
25
14
16
43
1.86
6849--8836
992
2.0
990
92
2
3301
33
21
15
29
1.94
10377--10507
51
2.5
53
81
8
169
31
25
10
32
1.90
10491--10563
27
2.8
25
89
8
101
24
32
20
21
1.97
10550--10716
51
3.3
50
74
11
158
28
26
11
32
1.91
10704--10775
28
2.6
28
86
4
92
22
34
20
22
1.97
10385--10826
210
2.1
210
87
4
642
27
27
14
30
1.95
10729--10961
79
2.9
77
78
5
241
25
29
15
30
1.95
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
23323--23374
11
4.9
10
86
9
68
86
9
3
0
0.69
23323--23375
20
2.5
22
81
9
74
84
9
5
0
0.76
24390--25005
55
10.8
56
82
13
631
25
30
21
22
1.99
24357--25014
226
2.9
229
82
12
800
25
29
20
23
1.99
25548--25614
34
2.0
33
88
2
98
26
16
11
44
1.82

Tables:   1

The End!