genome.fa.s2236.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold2236
Parameters: 2 7 7 80 10 50 1000
Length:  102306

Tables:   1   

This is table  1  of  1  ( 78 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
119--161	20	2.2	20	84	16	54	16	0	9	74	1.06
1395--1440	18	2.4	19	78	10	58	47	2	0	50	1.13
1589--1646	2	28.5	2	96	3	107	48	0	1	50	1.11
1755--1809	29	2.0	29	82	13	71	56	1	0	41	1.10
1768--1872	17	5.9	18	74	11	83	60	1	1	36	1.19
1795--1884	17	4.9	17	74	10	63	63	1	2	33	1.14
2880--2928	23	2.1	23	82	17	57	46	0	0	53	1.00
2916--2987	31	2.3	31	100	0	144	47	2	0	50	1.15
3293--3375	27	3.0	28	89	3	132	34	6	33	25	1.80
3580--3612	17	2.0	17	88	5	50	48	3	9	39	1.50
4444--4474	15	2.1	15	93	0	53	41	0	0	58	0.98
4677--4729	24	2.3	23	83	3	61	75	0	16	7	1.02
4871--4906	18	2.1	18	90	10	58	44	0	0	55	0.99
5762--5828	17	3.9	16	70	12	53	52	0	0	47	1.00
5766--5828	26	2.4	25	78	14	74	50	0	0	49	1.00
5979--6025	5	9.6	5	79	4	51	17	2	6	74	1.12
5978--6037	24	2.5	24	81	8	68	21	1	5	71	1.14
6794--6869	27	2.8	27	82	11	77	68	0	0	31	0.90
6797--6879	27	3.2	25	78	10	76	66	0	0	33	0.92
7197--7222	13	2.0	13	100	0	52	61	0	0	38	0.96
7764--7898	30	4.5	30	97	0	243	37	16	17	28	1.91
9830--9893	32	2.0	32	82	11	78	43	1	0	54	1.09
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10153--10177	11	2.3	11	100	0	50	76	0	0	24	0.80
10261--10307	23	2.0	23	95	0	85	34	12	21	31	1.91
11451--11505	16	3.4	16	73	14	51	45	23	10	20	1.82
13933--13985	26	2.0	28	85	7	74	62	0	37	0	0.96
15985--16075	3	29.7	3	76	16	71	64	1	0	34	1.01
16034--16080	17	2.7	18	84	15	64	61	0	0	38	0.96
16033--16074	13	3.3	13	87	9	52	64	0	0	35	0.94
15995--16079	20	4.1	21	73	13	70	63	1	0	35	1.02
16044--16080	19	2.1	19	90	10	60	56	0	0	43	0.99
16870--17412	184	2.9	183	84	5	676	36	16	19	27	1.93
27868--27921	5	11.0	5	86	11	76	62	0	0	37	0.95
28189--28239	22	2.2	23	86	6	68	58	1	0	39	1.09
33381--33456	34	2.3	31	84	6	89	36	5	3	53	1.42
46231--46363	67	2.0	67	100	0	266	41	13	28	16	1.86
50715--50748	13	2.6	13	86	13	52	35	0	0	64	0.94
50715--50744	14	2.2	14	94	5	53	33	0	0	66	0.92
55761--55898	36	3.8	36	87	0	213	18	16	26	37	1.92
56036--56884	210	4.0	210	93	0	1369	23	26	17	32	1.96
61319--61608	145	2.0	145	97	0	544	31	21	16	31	1.95
62123--62166	2	22.0	2	100	0	88	50	0	0	50	1.00
65881--65910	2	15.0	2	100	0	60	50	0	50	0	1.00
70183--70230	25	1.9	25	82	0	60	56	0	0	43	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
70363--70416	11	4.8	12	80	15	62	42	1	0	55	1.10
70370--70426	22	2.7	22	89	5	91	43	1	0	54	1.10
70362--70454	11	8.5	11	70	15	50	49	1	0	49	1.07
70405--70546	63	2.2	65	77	16	147	49	0	1	48	1.15
70516--70563	20	2.4	19	89	6	69	41	0	0	58	0.98
70515--70571	16	3.3	16	75	17	51	40	0	0	59	0.97
70724--70799	25	3.0	23	78	16	71	60	0	0	39	0.97
70728--70808	27	3.0	28	75	17	82	60	0	0	39	0.97
70917--70957	22	1.9	22	90	5	66	36	4	4	53	1.44
77798--77866	17	4.4	17	71	17	58	56	14	5	23	1.60
77792--77851	29	2.1	29	96	0	111	53	16	3	26	1.59
77806--77871	17	4.3	16	73	22	70	57	12	6	24	1.57
77928--77964	17	2.2	17	90	0	56	54	0	0	45	1.00
85310--85337	2	14.0	2	100	0	56	50	0	0	50	1.00
90191--90251	17	3.5	18	70	12	56	45	1	0	52	1.10
90242--90289	14	3.4	14	74	5	51	43	0	2	54	1.12
90233--90300	29	2.4	28	78	4	82	39	0	1	58	1.07
90594--90654	28	2.2	29	79	8	72	50	1	0	47	1.10
90587--90655	14	5.4	14	72	20	62	47	1	0	50	1.09
90568--90658	12	7.2	12	68	17	60	50	1	0	48	1.08
91563--91618	16	3.5	16	73	7	51	55	1	0	42	1.10
91568--91618	26	2.0	25	84	3	66	56	1	0	41	1.10
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
93460--93529	17	3.9	19	79	17	80	40	1	0	58	1.07
96540--96779	115	2.1	115	85	3	324	43	4	6	45	1.50
97288--97346	26	2.4	25	81	13	68	27	3	5	64	1.30
97295--97332	18	2.1	19	85	5	51	26	5	5	63	1.37
97619--97695	40	1.9	40	84	5	102	63	7	16	11	1.50
98645--98677	9	3.8	9	84	8	50	66	0	0	33	0.92
99025--99063	21	1.9	20	89	5	60	58	0	0	41	0.98
99044--99108	34	1.9	34	83	0	85	53	1	1	43	1.19
99253--99357	38	2.8	37	77	12	97	46	0	0	53	1.00
99295--99360	25	2.5	26	80	4	71	50	0	0	50	1.00
99691--99768	30	2.5	31	77	20	76	53	0	1	44	1.08
99872--99928	27	2.1	27	83	3	69	52	0	0	47	1.00

Tables:   1

The End!