Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold2240
Parameters: 2 7 7 80 10 50 1000
Length:  27825

Tables:   1   

This is table  1  of  1  ( 27 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1727--1859
67
2.0
67
100
0
266
30
19
16
33
1.94
2803--2843
2
20.5
2
94
0
73
46
0
2
51
1.14
5689--5748
28
2.1
30
84
6
79
33
3
13
50
1.58
5732--5861
18
6.9
18
72
12
84
33
3
10
52
1.52
5732--5861
56
2.3
56
82
6
163
33
3
10
52
1.52
7151--7339
96
2.0
97
86
6
271
48
7
6
37
1.58
7667--7722
19
2.8
19
86
10
69
48
0
0
51
1.00
7847--7892
21
2.1
21
88
8
65
41
0
2
56
1.11
9437--9603
39
4.3
39
75
8
121
44
4
10
40
1.57
9453--9603
78
1.9
77
80
9
173
45
3
9
41
1.55
15688--15760
13
5.7
12
69
24
51
68
1
1
28
1.06
15688--15770
18
4.6
18
73
20
68
67
1
1
30
1.06
15692--15843
27
5.7
27
70
21
90
61
1
0
36
1.09
15679--15760
23
3.7
23
73
15
64
67
1
1
30
1.06
15681--15771
37
2.3
39
80
17
109
65
1
1
31
1.06
15799--15874
35
2.2
34
80
11
84
56
5
1
36
1.30
20876--20901
6
4.3
6
100
0
52
69
0
0
30
0.89
22131--22209
41
1.9
41
87
5
115
54
10
15
20
1.69
22522--22635
41
2.8
41
81
2
122
42
14
22
20
1.87
23036--23191
40
3.8
40
75
6
145
38
15
19
26
1.92
23150--23401
105
2.4
106
80
5
269
42
14
20
22
1.89
23323--23401
41
1.9
41
86
0
113
45
16
17
20
1.85
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
23323--23416
41
2.3
41
83
3
100
44
14
19
21
1.86
23407--23569
65
2.5
65
84
7
206
42
13
21
22
1.87
24895--24982
33
2.7
33
90
0
140
27
12
13
46
1.79
26632--26679
3
16.0
3
86
0
69
39
0
31
29
1.57
26630--26678
12
4.1
12
92
7
82
42
0
30
26
1.55

Tables:   1

The End!