genome.fa.s2241.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold2241
Parameters: 2 7 7 80 10 50 1000
Length:  176612

Tables:   1   

This is table  1  of  1  ( 46 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15--83	1	69.0	1	94	0	120	0	0	97	2	0.19
179--227	26	1.9	25	83	4	62	4	0	59	36	1.17
195--239	21	2.1	21	83	0	54	2	0	64	33	1.06
289--388	1	100.0	1	86	0	137	5	0	93	2	0.43
289--388	41	2.5	41	92	7	163	5	0	93	2	0.43
417--456	1	40.0	1	94	0	71	2	0	97	0	0.17
524--43349	655	65.2	656	83	6	41720	29	17	24	28	1.97
524--43349	328	130.4	328	86	3	55749	29	17	24	28	1.97
10366--10565	100	2.0	100	91	1	321	30	20	30	20	1.97
15368--15567	100	2.0	100	88	1	294	30	19	29	20	1.97
43088--43632	283	1.9	283	93	1	950	30	16	20	31	1.95
43371--57341	328	41.8	328	71	12	6107	30	17	23	28	1.97
45610--46704	329	3.3	328	90	0	1701	30	18	24	26	1.98
46444--46987	282	1.9	282	92	2	914	31	16	21	30	1.95
46151--47382	615	2.0	606	85	3	1560	31	17	23	27	1.97
46726--57341	328	31.8	328	73	10	6338	30	17	23	28	1.97
46749--50198	655	5.3	653	89	1	4883	30	17	23	28	1.97
46726--57341	982	10.6	978	69	13	5599	30	17	23	28	1.97
57363--63853	328	19.8	328	90	0	9697	30	17	24	28	1.97
57363--63853	655	9.9	655	91	0	9885	30	17	24	28	1.97
57363--63853	982	6.6	983	93	1	10320	30	17	24	28	1.97
63875--64745	328	2.6	331	92	1	1428	30	16	23	29	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
64481--64994	268	1.9	268	93	0	884	31	15	23	28	1.96
64749--65714	327	3.0	326	90	1	1506	30	17	24	27	1.97
66350--67213	327	2.6	327	90	1	1347	31	16	22	28	1.96
67217--68444	327	3.7	327	90	1	1983	30	17	23	27	1.97
68467--71074	327	8.0	329	90	1	3956	29	17	24	28	1.97
68467--71074	655	4.0	656	90	1	4041	29	17	24	28	1.97
71096--80448	327	28.5	328	91	1	14185	29	17	23	28	1.97
71096--80448	655	14.3	657	90	1	14275	29	17	23	28	1.97
81219--81244	13	2.0	13	100	0	52	30	15	15	38	1.88
83814--83852	13	3.0	13	96	0	69	35	15	17	30	1.91
85924--85964	15	2.7	15	84	3	55	17	19	17	46	1.85
87765--87809	22	2.1	21	84	8	56	22	15	6	55	1.63
87754--87809	21	2.7	21	75	13	62	23	14	7	55	1.63
90040--90065	13	2.0	13	100	0	52	30	15	15	38	1.88
103373--103703	171	1.9	170	88	1	502	30	16	19	32	1.95
106843--106870	14	2.0	14	100	0	56	21	21	28	28	1.99
90467--130725	656	61.1	659	85	4	47108	30	17	23	28	1.97
108821--108848	14	2.0	14	100	0	56	21	21	28	28	1.99
122948--122976	14	2.1	14	100	0	58	20	0	0	79	0.74
131905--132047	51	2.8	51	93	0	241	25	19	13	41	1.88
132510--132537	10	2.8	10	100	0	56	17	42	10	28	1.83
137967--138005	21	1.9	20	94	5	69	35	12	15	35	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
138155--160209	331	66.6	331	99	0	43617	29	18	24	27	1.98
160355--176612	331	48.5	331	87	8	22478	27	24	18	30	1.98

Tables:   1

The End!