genome.fa.s2242.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold2242
Parameters: 2 7 7 80 10 50 1000
Length:  105331

Tables:   1   

This is table  1  of  1  ( 54 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7797--7867	27	2.6	28	88	6	110	47	0	0	52	1.00
9399--9437	21	1.9	20	89	5	60	25	2	7	64	1.33
9521--9570	22	2.3	22	86	3	66	38	4	0	58	1.17
10018--10047	9	3.3	9	95	0	51	0	46	0	53	1.00
10584--10609	2	13.0	2	100	0	52	0	50	0	50	1.00
13307--13350	3	14.7	3	100	0	88	31	0	0	68	0.90
15502--15544	22	2.0	22	85	0	59	34	9	2	53	1.46
32339--32420	28	2.9	28	80	7	96	26	17	31	24	1.97
32403--32573	51	3.3	51	79	4	198	32	11	26	29	1.92
32558--32631	27	2.7	28	85	6	89	22	20	32	24	1.98
32615--32746	51	2.5	51	79	10	140	31	9	25	32	1.89
35096--35121	13	2.0	13	100	0	52	38	15	15	30	1.88
35156--35223	19	3.9	18	76	23	83	38	14	11	35	1.83
35178--35202	13	1.9	13	100	0	50	32	16	16	36	1.90
35159--35221	32	2.0	32	96	0	117	36	15	12	34	1.86
35259--35336	21	3.8	21	86	8	115	32	12	16	38	1.87
35259--35340	41	2.0	40	88	6	121	32	12	17	37	1.86
39516--39597	28	2.9	28	83	7	96	26	17	31	24	1.97
39580--39749	52	3.3	51	83	2	214	31	11	25	31	1.91
39732--39798	27	2.4	28	87	7	93	22	17	35	23	1.95
39521--39913	211	1.9	211	88	3	594	30	12	27	29	1.93
42277--42302	13	2.0	13	100	0	52	38	15	15	30	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42257--42320	33	1.9	33	87	0	92	42	15	15	26	1.87
42342--42409	19	3.9	18	76	23	83	38	14	11	35	1.83
42364--42388	13	1.9	13	100	0	50	32	16	16	36	1.90
42345--42407	32	2.0	32	96	0	117	36	15	12	34	1.86
42465--42521	21	2.7	21	97	0	105	36	19	10	33	1.86
42987--43198	119	1.8	116	80	11	252	40	15	24	19	1.91
43331--43470	26	5.2	26	61	21	63	17	20	32	30	1.95
43187--44248	59	18.2	58	88	6	1280	25	20	28	25	1.99
45218--45265	1	48.0	1	78	0	51	0	4	6	89	0.58
45218--45264	16	2.9	15	87	12	67	0	4	6	89	0.59
45218--45263	10	4.5	10	86	10	58	0	4	6	89	0.60
57725--58061	51	6.4	50	69	14	182	31	12	26	30	1.92
57877--57952	27	2.8	28	85	2	91	19	22	35	22	1.96
57666--58054	211	1.8	211	88	3	595	30	13	27	29	1.94
64537--64607	27	2.6	28	88	6	110	47	0	0	52	1.00
66139--66177	21	1.9	20	89	5	60	25	2	7	64	1.33
66261--66310	22	2.3	22	86	3	66	38	4	0	58	1.17
66758--66787	9	3.3	9	95	0	51	0	46	0	53	1.00
70055--70095	3	13.7	3	100	0	82	31	0	0	68	0.90
72247--72289	22	2.0	22	85	0	59	34	9	2	53	1.46
85421--85535	52	2.2	52	93	0	194	29	15	17	37	1.91
85421--85557	52	2.6	52	83	4	161	30	15	18	35	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
85634--85658	13	1.9	13	100	0	50	32	16	16	36	1.90
85612--85678	33	2.0	33	88	0	98	40	13	11	34	1.81
86476--86907	49	8.7	52	81	9	374	31	17	25	25	1.97
86539--86913	49	7.7	49	84	5	494	30	17	26	25	1.98
86473--86913	98	4.5	98	84	7	554	31	17	26	25	1.97
86539--86913	147	2.6	142	87	5	547	30	17	26	25	1.98
100571--100639	26	2.6	27	86	6	97	46	1	0	52	1.09
100599--100670	34	2.1	34	82	12	87	48	0	1	50	1.09
102803--102832	9	3.3	9	95	0	51	0	46	0	53	1.00
103372--103396	2	12.5	2	100	0	50	0	48	0	52	1.00

Tables:   1

The End!